RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5271
         (113 letters)



>d2fug61 e.19.1.2 (6:15-175) NAD-quinone oxidoreductase chain 6,
           Nqo6 {Thermus thermophilus [TaxId: 274]}
          Length = 161

 Score =  100 bits (249), Expect = 8e-29
 Identities = 45/112 (40%), Positives = 68/112 (60%), Gaps = 7/112 (6%)

Query: 3   FIYRPFTASLQLTNFLTPPRIEPGSTTCKASAVTTTSW--MLEPRWVISMGSCANGGGYY 60
           F    F AS +  + +    I  G  + K + V    W  M +P+WVISMG+CA+ GG +
Sbjct: 49  FGSEVFRASPRQADVM----IVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMF 104

Query: 61  HYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKILQSWYR 112
           + +Y++V+  D ++PVD+YVPGCPP  EAL+Y ++QLQKKV+     +   R
Sbjct: 105 N-NYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQAYNERGER 155


>d1wuis1 e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small subunit
           {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 267

 Score = 57.6 bits (139), Expect = 7e-12
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 41  MLEPRWVISMGSCANGGGYYH--YSYSVVRGCDRIIP----VDIYVPGCPPTAEALMYGI 94
           + + + VI+ G+CA  GG      + +  +G +  +       I + GCPP    L+  I
Sbjct: 102 LPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTI 161

Query: 95  LQLQKKVK 102
           +   K   
Sbjct: 162 VYYLKNKA 169


>d1cc1s_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
           {Desulfomicrobium baculatum [TaxId: 899]}
          Length = 278

 Score = 56.2 bits (135), Expect = 3e-11
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 43  EPRWVISMGSCANGGGYYHYSYSV--------VRGCDRIIPVDIYVPGCPPTAEALMYGI 94
           +    +++G+C+  GG      +V            ++I  + + VPGCPP  + ++  +
Sbjct: 111 KSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPDWMVGTL 170

Query: 95  LQLQKKVKR 103
           +     V  
Sbjct: 171 VAAWSHVLN 179


>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit
           {Desulfovibrio gigas [TaxId: 879]}
          Length = 261

 Score = 55.3 bits (133), Expect = 4e-11
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 41  MLEPRWVISMGSCANGGGYY--HYSYSVVRGCDRIIP----VDIYVPGCPPTAEALMYGI 94
             + + VI++G+CA  GG      + +   G +  +       I + GCPP     +  +
Sbjct: 97  APKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVGTV 156

Query: 95  LQL 97
           + L
Sbjct: 157 VHL 159


>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
           {Desulfovibrio fructosovorans [TaxId: 878]}
          Length = 261

 Score = 54.2 bits (130), Expect = 1e-10
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 43  EPRWVISMGSCANGGGYYH--YSYSVVRGCDRIIPVD-IYVPGCPPTAEALMYGILQLQK 99
           + + +I +G+C+  GG      + S  +G    + V  I +PGCPP     +  ++ +  
Sbjct: 101 KAKGIICIGTCSPYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHV-- 158

Query: 100 KVKRMKILQSWYR 112
             K +  L    R
Sbjct: 159 LTKGIPDLDENGR 171


>d1b93a_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Escherichia
           coli [TaxId: 562]}
          Length = 148

 Score = 26.1 bits (57), Expect = 0.76
 Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 3/68 (4%)

Query: 43  EPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVK 102
           +   +I      N   +     +++R        +I V     TA+ ++           
Sbjct: 82  KIDVLIFFWDPLNAVPHDPDVKALLRLATV---WNIPVATNVATADFIIQSPHFNDAVDI 138

Query: 103 RMKILQSW 110
            +   Q +
Sbjct: 139 LIPDYQRY 146


>d1yq9h1 e.18.1.1 (H:7-536) Nickel-iron hydrogenase, large subunit
           {Desulfovibrio gigas [TaxId: 879]}
          Length = 530

 Score = 24.4 bits (52), Expect = 4.2
 Identities = 8/44 (18%), Positives = 13/44 (29%)

Query: 34  AVTTTSWMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVD 77
           A       L  +   +      G    H  ++VV GC     + 
Sbjct: 186 ATAHYLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTNYDSLR 229


>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha
          [TaxId: 82367]}
          Length = 123

 Score = 23.2 bits (49), Expect = 9.0
 Identities = 12/73 (16%), Positives = 20/73 (27%)

Query: 24 EPGSTTCKASAVTTTSWMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 83
          EP     +   V       +   V ++      G     S         +    +Y   C
Sbjct: 19 EPAFVRAEPGDVINFVPTDKSHNVEAIKEILPEGVESFKSKINESYTLTVTEPGLYGVKC 78

Query: 84 PPTAEALMYGILQ 96
           P     M G++Q
Sbjct: 79 TPHFGMGMVGLVQ 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.452 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 471,466
Number of extensions: 20158
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 13
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)