Query psy5277
Match_columns 314
No_of_seqs 203 out of 910
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 22:25:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2119|consensus 100.0 1.1E-63 2.3E-68 482.0 16.2 288 24-313 532-831 (879)
2 PF04685 DUF608: Protein of un 100.0 1.8E-61 3.9E-66 457.5 10.0 280 24-306 74-365 (365)
3 COG4354 Predicted bile acid be 100.0 6.8E-47 1.5E-51 359.1 21.7 278 25-311 419-720 (721)
4 PF06202 GDE_C: Amylo-alpha-1, 100.0 2.9E-37 6.4E-42 294.0 28.0 282 6-308 46-369 (370)
5 TIGR01561 gde_arch glycogen de 100.0 3.6E-30 7.9E-35 255.0 20.3 224 5-243 308-567 (575)
6 COG3408 GDB1 Glycogen debranch 100.0 1.5E-29 3.2E-34 253.7 23.4 272 7-308 300-600 (641)
7 TIGR01531 glyc_debranch glycog 100.0 2.8E-28 6.1E-33 254.6 24.0 281 3-309 1050-1459(1464)
8 PRK10137 alpha-glucosidase; Pr 99.9 1.9E-20 4E-25 189.8 27.0 239 51-306 419-775 (786)
9 TIGR01577 oligosac_amyl oligos 99.9 1.9E-20 4.1E-25 189.7 19.6 227 49-306 353-605 (616)
10 PF05592 Bac_rhamnosid: Bacter 99.7 4.9E-16 1.1E-20 154.3 15.1 254 11-312 170-449 (509)
11 COG3459 Cellobiose phosphoryla 99.7 2.3E-15 5.1E-20 152.1 19.0 245 4-265 625-921 (1056)
12 PRK13271 treA trehalase; Provi 99.6 8.1E-14 1.8E-18 138.1 24.2 249 8-286 177-504 (569)
13 PF01204 Trehalase: Trehalase; 99.6 2.6E-14 5.6E-19 141.6 19.8 252 8-287 146-479 (512)
14 PLN02567 alpha,alpha-trehalase 99.6 9.2E-13 2E-17 131.1 25.3 250 9-287 171-513 (554)
15 PRK13272 treA trehalase; Provi 99.6 1.6E-12 3.4E-17 128.1 25.0 250 8-287 178-505 (542)
16 TIGR01535 glucan_glucosid gluc 99.5 8.6E-13 1.9E-17 133.2 22.8 218 49-287 351-598 (648)
17 PRK13270 treF trehalase; Provi 99.5 4.4E-12 9.6E-17 125.2 23.7 248 8-287 189-514 (549)
18 PLN03005 beta-fructofuranosida 99.5 2.6E-12 5.6E-17 123.0 21.3 245 48-308 203-515 (550)
19 COG3387 SGA1 Glucoamylase and 99.5 1.8E-12 3.9E-17 130.5 18.7 233 45-306 349-596 (612)
20 PLN02973 beta-fructofuranosida 99.5 1.1E-11 2.4E-16 118.9 21.9 246 48-308 224-536 (571)
21 PLN02703 beta-fructofuranosida 99.5 6.8E-12 1.5E-16 121.0 19.7 248 47-308 255-568 (618)
22 PF12899 Glyco_hydro_100: Alka 99.4 4.2E-11 9.2E-16 112.6 18.6 251 40-309 113-428 (436)
23 PF03200 Glyco_hydro_63: Manno 99.0 6.8E-08 1.5E-12 100.3 23.5 287 4-308 410-795 (801)
24 KOG0602|consensus 99.0 4.3E-08 9.4E-13 96.7 18.2 254 9-287 204-532 (600)
25 PF00723 Glyco_hydro_15: Glyco 98.7 2E-07 4.3E-12 91.5 12.8 192 48-251 125-349 (448)
26 COG1626 TreA Neutral trehalase 98.5 1.6E-05 3.4E-10 77.6 20.6 234 8-270 189-503 (558)
27 KOG3625|consensus 98.3 4.1E-05 9E-10 78.4 18.3 284 2-309 1094-1511(1521)
28 PF06824 DUF1237: Protein of u 98.2 3.5E-05 7.6E-10 73.9 13.4 227 49-303 128-414 (424)
29 KOG2161|consensus 98.1 0.00069 1.5E-08 68.3 20.3 284 3-307 450-840 (849)
30 COG3538 Uncharacterized conser 96.8 0.15 3.2E-06 47.9 17.1 225 49-303 135-411 (434)
31 PF03632 Glyco_hydro_65m: Glyc 96.1 0.008 1.7E-07 57.6 5.1 138 8-147 50-221 (370)
32 cd00249 AGE AGE domain; N-acyl 95.8 1.3 2.7E-05 42.2 18.6 98 48-156 52-159 (384)
33 cd00249 AGE AGE domain; N-acyl 95.3 1.8 3.8E-05 41.2 17.7 92 50-152 116-211 (384)
34 KOG4125|consensus 93.2 0.22 4.8E-06 48.2 6.3 136 7-146 312-476 (682)
35 PRK13807 maltose phosphorylase 92.6 0.71 1.5E-05 48.4 9.6 96 51-146 427-543 (756)
36 PF08760 DUF1793: Domain of un 91.4 8.3 0.00018 32.9 15.3 73 115-197 2-78 (171)
37 PF03663 Glyco_hydro_76: Glyco 90.0 1.6 3.4E-05 41.9 8.5 94 50-153 156-260 (370)
38 COG1331 Highly conserved prote 89.2 6.1 0.00013 40.6 12.1 103 43-157 405-513 (667)
39 COG4833 Predicted glycosyl hyd 86.5 2 4.2E-05 39.2 6.1 108 28-152 133-250 (377)
40 COG3537 Putative alpha-1,2-man 84.7 26 0.00057 36.0 13.5 50 247-308 614-663 (768)
41 PF07221 GlcNAc_2-epim: N-acyl 80.3 12 0.00026 35.1 9.3 92 52-153 84-178 (346)
42 COG1554 ATH1 Trehalose and mal 80.0 13 0.00029 38.9 9.8 75 52-126 437-523 (772)
43 PF07971 Glyco_hydro_92: Glyco 79.6 1.3 2.9E-05 44.2 2.5 259 7-308 131-422 (502)
44 PF03663 Glyco_hydro_76: Glyco 77.1 7.9 0.00017 37.1 7.0 103 46-160 85-203 (370)
45 PF07221 GlcNAc_2-epim: N-acyl 76.8 16 0.00034 34.4 8.8 87 55-154 27-120 (346)
46 PF07470 Glyco_hydro_88: Glyco 75.1 72 0.0016 29.7 13.3 103 43-152 118-229 (336)
47 PLN02567 alpha,alpha-trehalase 74.0 14 0.0003 37.5 8.0 47 231-281 142-192 (554)
48 cd04791 LanC_SerThrkinase Lant 69.3 43 0.00093 30.7 9.8 99 45-152 135-235 (321)
49 PF07721 TPR_4: Tetratricopept 63.6 15 0.00032 20.6 3.5 23 242-264 3-25 (26)
50 PRK13272 treA trehalase; Provi 61.1 42 0.00091 34.0 8.3 77 193-276 117-198 (542)
51 PRK13271 treA trehalase; Provi 60.7 50 0.0011 33.7 8.9 78 192-276 115-197 (569)
52 COG1331 Highly conserved prote 60.0 1.1E+02 0.0024 31.7 11.1 96 51-157 211-318 (667)
53 COG2942 N-acyl-D-glucosamine 2 59.9 1.7E+02 0.0037 28.3 14.9 223 12-253 76-316 (388)
54 PF01204 Trehalase: Trehalase; 56.8 28 0.00062 34.9 6.4 39 237-276 128-166 (512)
55 PF13428 TPR_14: Tetratricopep 56.2 31 0.00066 21.7 4.4 27 243-269 4-30 (44)
56 PF07470 Glyco_hydro_88: Glyco 54.3 1.2E+02 0.0026 28.2 10.0 99 45-149 183-287 (336)
57 KOG2430|consensus 50.6 1.2E+02 0.0026 28.9 8.8 87 54-148 190-286 (587)
58 TIGR03504 FimV_Cterm FimV C-te 50.2 33 0.00071 22.3 3.7 25 244-268 3-27 (44)
59 COG4225 Predicted unsaturated 49.3 38 0.00082 32.1 5.4 36 54-97 41-76 (357)
60 KOG2429|consensus 45.7 94 0.002 31.4 7.7 34 250-287 326-359 (622)
61 PF13174 TPR_6: Tetratricopept 45.6 33 0.00072 19.4 3.1 26 244-269 4-29 (33)
62 PF02011 Glyco_hydro_48: Glyco 45.5 77 0.0017 32.1 7.1 57 34-94 392-449 (619)
63 PF12854 PPR_1: PPR repeat 43.8 33 0.00073 20.5 2.9 20 245-264 12-31 (34)
64 TIGR01535 glucan_glucosid gluc 41.6 1.6E+02 0.0034 30.7 9.0 50 237-290 294-343 (648)
65 COG4225 Predicted unsaturated 41.4 2.5E+02 0.0055 26.7 9.5 92 61-162 91-187 (357)
66 KOG2429|consensus 41.1 3.1E+02 0.0068 27.9 10.5 132 6-158 155-302 (622)
67 PRK13270 treF trehalase; Provi 40.3 54 0.0012 33.3 5.4 39 237-276 171-209 (549)
68 PF07944 DUF1680: Putative gly 36.1 1.9E+02 0.0042 29.0 8.6 75 53-144 129-205 (520)
69 PF13374 TPR_10: Tetratricopep 33.3 1.1E+02 0.0023 18.1 4.7 33 114-146 3-35 (42)
70 PF00759 Glyco_hydro_9: Glycos 32.3 2.6E+02 0.0055 27.2 8.7 78 71-149 93-195 (444)
71 TIGR02474 pec_lyase pectate ly 32.1 3.9E+02 0.0085 24.8 9.2 95 49-148 44-148 (290)
72 TIGR00756 PPR pentatricopeptid 30.7 1E+02 0.0022 17.2 3.7 20 246-265 6-25 (35)
73 PF09492 Pec_lyase: Pectic aci 30.1 2.1E+02 0.0044 26.6 7.0 100 48-151 38-146 (289)
74 PF13041 PPR_2: PPR repeat fam 29.1 95 0.0021 19.8 3.5 26 246-276 9-34 (50)
75 PF06301 Lambda_Kil: Bacteriop 28.8 1.6E+02 0.0034 19.1 4.2 31 114-147 6-36 (43)
76 PF14853 Fis1_TPR_C: Fis1 C-te 28.5 1.3E+02 0.0028 20.3 4.1 26 244-269 5-30 (53)
77 PF06917 Pectate_lyase_2: Peri 27.7 2.2E+02 0.0047 28.6 7.0 89 54-152 216-346 (557)
78 PF01535 PPR: PPR repeat; Int 26.6 1E+02 0.0022 16.9 3.0 21 246-266 6-26 (31)
79 KOG0602|consensus 26.5 1.2E+02 0.0026 31.1 5.1 40 237-277 185-224 (600)
80 PF14689 SPOB_a: Sensor_kinase 25.7 1E+02 0.0022 21.3 3.3 27 244-270 27-53 (62)
81 KOG3635|consensus 25.5 8.8E+02 0.019 26.2 11.2 101 182-285 272-384 (1150)
82 PF06662 C5-epim_C: D-glucuron 24.8 4.1E+02 0.0089 23.0 7.6 100 45-152 24-135 (189)
83 PF13181 TPR_8: Tetratricopept 24.8 1.4E+02 0.0031 16.9 4.0 26 244-269 5-30 (34)
84 PF06051 DUF928: Domain of Unk 24.6 86 0.0019 27.1 3.4 33 109-141 144-177 (189)
85 PF11349 DUF3151: Protein of u 24.1 3.6E+02 0.0079 21.7 6.4 29 112-140 91-119 (129)
86 KOG2244|consensus 23.7 7.8E+02 0.017 25.3 10.0 130 7-157 470-621 (786)
87 PF07719 TPR_2: Tetratricopept 23.5 1.5E+02 0.0032 16.6 4.1 26 244-269 5-30 (34)
88 PF13812 PPR_3: Pentatricopept 23.4 1.5E+02 0.0033 16.6 4.2 25 246-275 7-31 (34)
89 cd00244 AlgLyase Alginate Lyas 23.1 3.9E+02 0.0084 25.4 7.5 106 7-128 146-254 (339)
90 TIGR01561 gde_arch glycogen de 22.1 3.1E+02 0.0067 28.1 7.2 64 237-307 292-356 (575)
91 PLN02345 endoglucanase 20.9 8.3E+02 0.018 24.3 9.8 79 69-148 79-182 (469)
92 PF14716 HHH_8: Helix-hairpin- 20.5 3.1E+02 0.0066 19.1 5.2 31 112-142 4-35 (68)
No 1
>KOG2119|consensus
Probab=100.00 E-value=1.1e-63 Score=482.04 Aligned_cols=288 Identities=47% Similarity=0.817 Sum_probs=279.3
Q ss_pred ccCCCCCCcccCCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhCCCCCcccccCCCCc
Q psy5277 24 TRWFPEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFDKQGLGIVQNGGFPD 103 (314)
Q Consensus 24 ~~g~p~~~p~~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~d~d~dGL~~~~g~~d 103 (314)
|.|.|.++||.++|+|+.||+..|+|+|++||+.+||.|..|||..|++.+||.++.+|++++++|.|+||||+|.|.+|
T Consensus 532 DlG~p~~dPW~~~NaY~iHdT~rWKDLN~KFVLqvYRD~~~tgd~~flk~~wpsv~~ime~l~~fDKD~DGmIEN~GfpD 611 (879)
T KOG2119|consen 532 DLGDPDNDPWIETNAYNIHDTGRWKDLNLKFVLQVYRDYVATGDEKFLKAVWPSVYAIMEYLEQFDKDNDGMIENEGFPD 611 (879)
T ss_pred ccCCCCcCchhhhceeeeccccchhhcCceeEEEEEeeeEEeccHHHHHHHHHHHHHHHHHHHhhcccCCcccccCCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hH----------HhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCcceeeecCCCCCCCCcccccc
Q psy5277 104 QT----------AYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTGSYYKFDSSQSRHSDSIMADQ 173 (314)
Q Consensus 104 ~t----------~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~~~~~~d~~~~~~~~~~~~~q 173 (314)
|| +||++||++||++|++||+++|+++.+..|++..++.|++++++||||.||.||+...+.+++|+++|
T Consensus 612 QTYD~W~~tGvSAYCGgLWlAALqa~~amA~~~g~~~~~~~f~~klekak~~ye~kLWNGsYfnyD~s~s~~s~sImaDQ 691 (879)
T KOG2119|consen 612 QTYDAWSMTGVSAYCGGLWLAALQAASAMARQIGDPNTQDYFNNKLEKAKDVYEKKLWNGSYFNYDESSSGSSSSIMADQ 691 (879)
T ss_pred ccccceEEecchhhhhHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHhhcCCceeccccCCCCcchhhHHHh
Confidence 98 99999999999999999999999999999999999999999999999999999987766788999999
Q ss_pred ccchhhhhhcCCCCCCCCChHHHHHHHHHHHhhccCCcCCCccccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHC
Q psy5277 174 LCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAMLYE 253 (314)
Q Consensus 174 l~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~~~~~~~gG~~G~~~~~~p~g~~~~~~~~~g~vW~~~~~~lA~~~~~~ 253 (314)
|+|||++.++|++ .++++++++++|++|++.|+.+|.+|.+|++||+.|+|.+|..++|+.|||+|++|.+|+.||+.
T Consensus 692 laGqWy~~a~gl~--~i~~~~~vrsAL~tIy~~NVm~~~~G~~GAVNGm~p~G~VD~ssiQS~EvW~GvtYalAAtMIqe 769 (879)
T KOG2119|consen 692 LAGQWYARACGLP--PIFPEEKVRSALDTIYDFNVMKFKGGRMGAVNGMLPSGKVDTSSIQSREVWAGVTYALAATMIQE 769 (879)
T ss_pred HhhHHHHHhcCCC--ccCchHHHHHHHHHHHhhceeeecCCceeccccccCCCccccccceehhhhccHHHHHHHHHHHH
Confidence 9999999999998 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHH--hCCCCCCCccccCCCCCCCCCchhhhHHHHHHHHHccCCC
Q psy5277 254 GNVDEAWTTAGGLYRTVYER--TGLGFETPEGLTGDKTYRSGGYMRALAVYAMQDAYLKGKV 313 (314)
Q Consensus 254 G~~~~A~~l~~~~~~~~~~~--~g~~~~~PE~~~~~g~~~~~~Y~r~~~~w~~~~al~~~~~ 313 (314)
|+.++|+..+.++++.++++ .|+.|++||.++.+..+|++.|||||++|+|++||+..+-
T Consensus 770 G~~e~~FqTA~G~y~~~w~~~glg~~FqTPEa~~~~~~yRsl~YMRPLsIWamQwaL~~~~~ 831 (879)
T KOG2119|consen 770 GLVEKGFQTASGIYEAIWSETGLGYAFQTPEAWYMEDEYRSLGYMRPLAIWAMQWALTKPQA 831 (879)
T ss_pred hhHHhhhhhhhhhHHHHhhhcccceEEECchhhhcchhhhhhhhcchhHHHHHHHHHhcccc
Confidence 99999999999999999988 4778999999999999999999999999999999987653
No 2
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=100.00 E-value=1.8e-61 Score=457.50 Aligned_cols=280 Identities=41% Similarity=0.745 Sum_probs=122.5
Q ss_pred ccCCCCCCcccCCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhCCCCCcccccCCCCc
Q psy5277 24 TRWFPEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFDKQGLGIVQNGGFPD 103 (314)
Q Consensus 24 ~~g~p~~~p~~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~d~d~dGL~~~~g~~d 103 (314)
|.|.|.+.||.++|.|+.+|...|+|.+|+||+.+|++|+.|||.+||+++||+|+++|+|+.++|.|+||||++.+.+|
T Consensus 74 dlg~p~~~P~~~~n~y~~~~~~~~~D~~~~fVL~vyr~~~~TGD~~fL~~~wp~v~~a~~~~~~~D~d~dGl~e~~g~~D 153 (365)
T PF04685_consen 74 DLGSPFDDPWDRTNAYNYHDVYAWKDLNPKFVLQVYRDYKWTGDRDFLKEMWPAVKKAMDYLLSWDRDGDGLPENPGHPD 153 (365)
T ss_dssp -------------------------------------------------EHHHHHHHHHHHHHHSB--TTS-BEEET---
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999987666
Q ss_pred hH----------HhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCcceee--ecCCCCCCCCcccc
Q psy5277 104 QT----------AYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTGSYYK--FDSSQSRHSDSIMA 171 (314)
Q Consensus 104 ~t----------~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~~~~~--~d~~~~~~~~~~~~ 171 (314)
+| +|+++||++||+++++||+.+|+++.+++|++.++++|++|++.||||+||. +|.. .+.+++|++
T Consensus 154 ~TyD~~~~~G~say~~~L~laAL~A~~emA~~lgd~~~a~~y~~~~~~~~~~~~~~LWnGeyy~~~~d~~-~~~~~~~~a 232 (365)
T PF04685_consen 154 QTYDDWSMYGPSAYCGGLWLAALRAAAEMAKILGDPELAAKYRELAEKAKKAFNKKLWNGEYYRQWYDSK-YQNGDGCMA 232 (365)
T ss_dssp SSSTT-EEEEEEHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHSEETTEE--EE----TTS-EES-T
T ss_pred cccccCCeeCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhCHhheeeeeccC-CCCCCeEEe
Confidence 65 9999999999999999999999999999999999999999999999999999 8733 346789999
Q ss_pred ccccchhhhhhcCCCCCCCCChHHHHHHHHHHHhhccCCcCCCccccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHH
Q psy5277 172 DQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAML 251 (314)
Q Consensus 172 ~ql~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~~~~~~~gG~~G~~~~~~p~g~~~~~~~~~g~vW~~~~~~lA~~~~ 251 (314)
+|++|||++.++||+ +++|+|+++++|++|++.|+..+.+|..|++|+++|+|.++.++.|+.||||+++|.+|++|+
T Consensus 233 DQl~Gqw~a~~~gl~--~v~~~e~v~sAL~sI~~~N~~~~~~~~~G~~n~~~p~g~~~~~~~q~~evW~G~~y~~Aa~mi 310 (365)
T PF04685_consen 233 DQLCGQWWARLLGLG--DVLDEEKVKSALRSIYEYNVKYFLGGEMGAVNGVWPDGKPDTSSPQSNEVWTGVEYAVAAHMI 310 (365)
T ss_dssp T-SS--EEHHHHHHT--T-S-HHHHHHHHHHHHHHHEE-S-BTTTBGGGGS-T---------------------------
T ss_pred ChhhHHHHHHHcCCc--CCCCHHHHHHHHHHHHHhcCeEccCCCCcEEEeeecccccccccccccccccccccccccccc
Confidence 999999999999998 999999999999999999998788889999999999999998999999999999999999999
Q ss_pred HCCChHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCCCchhhhHHHHHHH
Q psy5277 252 YEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGDKTYRSGGYMRALAVYAMQD 306 (314)
Q Consensus 252 ~~G~~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~g~~~~~~Y~r~~~~w~~~~ 306 (314)
+.|+.++|+++++++.++.+.+.|+.|+.||.+++++.+|++||||||++|+|++
T Consensus 311 ~~G~~~e~~~~~~~~~~~~~~~~g~~f~~pE~~~~~~~~r~~~Y~R~ls~W~~~~ 365 (365)
T PF04685_consen 311 QEGMVEEGLEIAKGIYDRYYGRKGNPFNTPEAINADGNYRGSHYMRPLSIWSMQW 365 (365)
T ss_dssp -------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 9999999999999999999778999999999999999999999999999999974
No 3
>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.8e-47 Score=359.10 Aligned_cols=278 Identities=31% Similarity=0.536 Sum_probs=254.2
Q ss_pred cCCCCCCcccCCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhCCCCCcccccCCCCch
Q psy5277 25 RWFPEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFDKQGLGIVQNGGFPDQ 104 (314)
Q Consensus 25 ~g~p~~~p~~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~d~d~dGL~~~~g~~d~ 104 (314)
.| |++.++..++.-...|..+|+|.+|-||+.+|++++.|+|.+||+++||.++++|||+.+.|.|.||||+.+|.+|+
T Consensus 419 Lg-~~ehs~e~~iy~t~~d~~~wkDlgp~fVLlvYrdf~~T~D~eFL~e~y~~iv~~iD~~~~~d~d~DgiP~~~g~~d~ 497 (721)
T COG4354 419 LG-PNEHSIEKPIYGTYQDPNLWKDLGPDFVLLVYRDFKFTNDREFLKEVYPVIVEAIDWLKRFDQDNDGIPENSGAMDN 497 (721)
T ss_pred cC-ccccchhcccccccCCchhhhhcCCcEEeeehhhhhhcccHHHHHHHHHHHHHHHHHHHhhcccCCCCCcccCCccc
Confidence 44 77888877777777788899999999999999999999999999999999999999999988999999999987777
Q ss_pred H----------HhHHHHHHHHHHHHHHHHHHcCCc-----------HHHHHHHHHHHHHHHHHHHhCcCcceeeecCCCC
Q psy5277 105 T----------AYCGGLHIAALACMVEMSSLLNDT-----------QQQQQFSAKLTKASQVYHDLLWTGSYYKFDSSQS 163 (314)
Q Consensus 105 t----------~~~~al~y~AL~~~a~lA~~lG~~-----------~~a~~~~~~a~~~k~~~~~~lW~~~~~~~d~~~~ 163 (314)
+ +||.+||++||.++.+|++.+++. .....|.+..+++++.|++.+|||+||..++..
T Consensus 498 ~fDa~~i~G~ssy~~sl~iaal~A~l~is~~l~~~~~~~a~~e~~~~~~~~y~~~L~~~~e~~~~~LwNGkYy~lws~~- 576 (721)
T COG4354 498 TFDATRIQGHSSYCGSLFIAALIAALEISKYLLDNAQLEALNEASKNYVDFYNTWLKEAREAFNKYLWNGKYYILWSNS- 576 (721)
T ss_pred ccccceeechhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCceeEeccccc-
Confidence 6 999999999999999999999976 245678999999999999999999999966433
Q ss_pred CCCCccccccccchhhhhhcCCCCCCCCChHHHHHHHHHHHhhccCCcCCCccccccCCCCCCCCCC-CCCCCCCCCccH
Q psy5277 164 RHSDSIMADQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDR-SAIQSEEVWTGV 242 (314)
Q Consensus 164 ~~~~~~~~~ql~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~~~~~~~gG~~G~~~~~~p~g~~~~-~~~~~g~vW~~~ 242 (314)
++++++++|++|||++.++||| +++|.++++++|++|+++|+.. +.+|..|+++|+|+|.+ .+.|+-++||++
T Consensus 577 -~~~s~lAsQL~Gqfy~~LLgLp--divdhd~~ksal~sIy~lnf~~---~~~~~~n~v~~dgsp~n~~svq~~s~W~gi 650 (721)
T COG4354 577 -GNDSVLASQLCGQFYATLLGLP--DIVDHDKIKSALESIYDLNFNA---SEYCAANGVRPDGSPVNPLSVQPLSVWPGI 650 (721)
T ss_pred -CchhhhHHHHHhHHHHHHcCCC--cccchHHHHHHHHHHHhhcccc---ccccccCccCCCCCcCCcccccccccccch
Confidence 5789999999999999999999 9999999999999999987554 57899999999999998 577999999999
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhCCCCCCCccccCCC--CCCCCCchhhhHHHHHHHHHccC
Q psy5277 243 TYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGDK--TYRSGGYMRALAVYAMQDAYLKG 311 (314)
Q Consensus 243 ~~~lA~~~~~~G~~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~g--~~~~~~Y~r~~~~w~~~~al~~~ 311 (314)
++.+|++|++.|+.+++.++.+.+++++ ...|+.+|.||.++..+ ..+..||.|+|++|+++.++.|+
T Consensus 651 ~F~laa~m~~~Gm~de~~~~~e~~w~~l-~~ng~~fr~p~aInav~g~~~~l~~yv~~~s~W~l~~l~~g~ 720 (721)
T COG4354 651 NFALAAHMIQMGMKDEGFELAENVWNQL-KNNGLQFRQPSAINAVGGETNRLSHYVGSPSIWALLFLLNGK 720 (721)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHH-HhCCcccCChhheeeccceeeehhhccCCchHHHHHHHhccc
Confidence 9999999999999999999999999999 55899999999999997 67889999999999999999886
No 4
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=100.00 E-value=2.9e-37 Score=293.99 Aligned_cols=282 Identities=19% Similarity=0.292 Sum_probs=221.5
Q ss_pred hhhHHHHHHhhhhcccccccCC-CCCCcccCCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy5277 6 TMGEVKFRSAANTHERYYTRWF-PEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRK 84 (314)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~g~-p~~~p~~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~ 84 (314)
+-+.+.++++|.++.+..+.|. ||..+.+..+.|+++|+++| ||+++++|+++|||.+||++++|.+++++++
T Consensus 46 ~~~~~~a~~~L~~~~~~~~~G~ipn~~~~~~~~~Y~s~Dat~w------fl~~l~~Y~~~t~D~~~l~~~~~~i~~il~~ 119 (370)
T PF06202_consen 46 PGRFEEARNILATFAGTQRHGLIPNELRDGEEPRYNSVDATLW------FLIALQEYYRWTGDYSFLRELYPAIEEILEW 119 (370)
T ss_pred CCcHHHHHHHHHHHHHhhhcCcccCcccCCCCCCCCCCccHHH------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999 99999988899999888777 9999999999999999999999999999999
Q ss_pred HHhh-----CCC-CCcccccCC------CCch-------------HHhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy5277 85 CESF-----DKQ-GLGIVQNGG------FPDQ-------------TAYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKL 139 (314)
Q Consensus 85 ~~~~-----d~d-~dGL~~~~g------~~d~-------------t~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a 139 (314)
+.+. ++| ++||+..+. -+|. .++||+|||+||+.+++|++..+++ .+++|+++|
T Consensus 120 ~~~g~~~~~~~d~~~gl~~~~~~~~~~tWmD~~~~g~~~tpr~g~~vEIqal~y~AL~~~~~la~~~~~~-~a~~~~~~A 198 (370)
T PF06202_consen 120 YADGTDFGIRVDPEDGLIYSGNGLNNQTWMDARNDGRPVTPRDGAAVEIQALWYNALRFAAELAEKFGDE-LAARYREWA 198 (370)
T ss_pred HHhCCCCccccccCCCeeecCCCCCCCCccccccCCccccCCCCcchHHHHHHHHHHHHHHHHHhhcCCc-hHHHHHHHH
Confidence 9762 245 789988532 0110 1899999999999999999987776 689999999
Q ss_pred HHHHHHHHHhCcCcc--eee--ecCCCCCCCCccccccccchhhhhhcCCCCCCCCChHHHHHHHHHHHhhccCCcCCCc
Q psy5277 140 TKASQVYHDLLWTGS--YYK--FDSSQSRHSDSIMADQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGS 215 (314)
Q Consensus 140 ~~~k~~~~~~lW~~~--~~~--~d~~~~~~~~~~~~~ql~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~~~~~~~gG~ 215 (314)
+++|++|+++||+++ +|. +|..+. .+.++++||++ .+.|+ ++++++++++++++.+.+.++++++-..
T Consensus 199 ~~lk~~F~~~FW~~~~g~~~d~ld~~~~-~d~~irpN~~~------a~~L~-~~~l~~~~a~~vl~~~~~~L~tp~GlRT 270 (370)
T PF06202_consen 199 ERLKESFEKRFWDEDRGYYADALDGDKE-PDDSIRPNQLI------ALSLP-PGLLDPEQAKKVLDRVEEELLTPWGLRT 270 (370)
T ss_pred HHHHHHHHHHHcCCCCCEEEEEecCCCC-CCcccccCchh------HHhcC-CccCCHHHHHHHHHHHHHHcCCCCchhc
Confidence 999999999999843 433 454433 57789999987 34554 5899999999999999888888762111
Q ss_pred cccc-cCCCC--CCCCCC--CCCCCCCCCccHHHHHHHHHHHCCCh-HHHHHHHHHHHH----HHHHHhCCCCCCCcccc
Q psy5277 216 MGAV-NGMKP--NGDRDR--SAIQSEEVWTGVTYLLSAAMLYEGNV-DEAWTTAGGLYR----TVYERTGLGFETPEGLT 285 (314)
Q Consensus 216 ~G~~-~~~~p--~g~~~~--~~~~~g~vW~~~~~~lA~~~~~~G~~-~~A~~l~~~~~~----~~~~~~g~~~~~PE~~~ 285 (314)
+... ....| .|.... .+||+|+||||++..++.++++.|.. +++.++++.+++ ++ ...+ .+++||+||
T Consensus 271 Ls~~~~~Y~p~y~g~~~~rd~sYHnGsvWpw~~g~~~~al~r~g~~~~~~~~~~~~ll~~~~~~~-~~~~-~~~lpEl~d 348 (370)
T PF06202_consen 271 LSPSDPRYNPIYEGDQDSRDMSYHNGSVWPWDNGIYAEALLRYGFDEEEAIREAKSLLEGFEEHL-QEFG-LGRLPELFD 348 (370)
T ss_pred ccCCCCCcCCCCCCccccCcccccCCCcCcCcHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHH-hhcc-CCCcchhcC
Confidence 1100 01112 122211 47899999999999999999999883 556655555555 44 4456 799999999
Q ss_pred CCC--CCCCCCchhhhHHHHHHHHH
Q psy5277 286 GDK--TYRSGGYMRALAVYAMQDAY 308 (314)
Q Consensus 286 ~~g--~~~~~~Y~r~~~~w~~~~al 308 (314)
+++ .|++| ++|+||+...|
T Consensus 349 g~~~~~p~gc----~~QAWS~a~il 369 (370)
T PF06202_consen 349 GDPPHYPRGC----SPQAWSVAEIL 369 (370)
T ss_pred CCCCCCCCCC----HHHHHHHHHhh
Confidence 995 46677 99999998766
No 5
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=99.97 E-value=3.6e-30 Score=255.02 Aligned_cols=224 Identities=17% Similarity=0.160 Sum_probs=176.1
Q ss_pred chhhHHHHHHhhhhcccccccCC-CCCCcc-cCCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy5277 5 WTMGEVKFRSAANTHERYYTRWF-PEEEPF-SLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELI 82 (314)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~g~-p~~~p~-~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al 82 (314)
-|-|.+.|+.+|.||.++++.|+ ||.+|. +..+.|+++|+++| ||+++++|+++|||.+|+++++|.++.+|
T Consensus 308 ~tgr~~~A~~iL~~fa~~~~~GliPN~~~~~g~~p~YntvDAtLW------fi~al~~Y~~~tgD~~~l~~l~p~l~~ii 381 (575)
T TIGR01561 308 IDKQFDEAKEAILKFANLCKRGLIPNNFIAFGGDPIYNGVDASLW------AIHAIDKTFAYSQDFLFIRDVVDKVLDII 381 (575)
T ss_pred cCCcHHHHHHHHHHHHHHhHCCCCCCccCCCCCCccCCCchHHHH------HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45688999999999999999999 999998 57789999888888 99999999999999999999999999999
Q ss_pred HHHHhh-----CCCCCcccccCC---CCch-------------HHhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy5277 83 RKCESF-----DKQGLGIVQNGG---FPDQ-------------TAYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTK 141 (314)
Q Consensus 83 ~~~~~~-----d~d~dGL~~~~g---~~d~-------------t~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~ 141 (314)
+++.+. .+|+|||+..+. -+|- .+++|+|||+||+.+++|++.+|++ +..|+++|++
T Consensus 382 ~~y~~G~~~~i~~d~dGLi~~g~~lTWMDa~~g~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~--a~~y~~~A~~ 459 (575)
T TIGR01561 382 DNYCAGNDFAIGMDNDLIFHKGAPLTWMDAKVDERAVTPRAGAACEINALWYNALKTAEFLGNELGED--AESLEEKAAG 459 (575)
T ss_pred HHHhcCCCcEEEECCCccEeCCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHH
Confidence 988762 356789987541 1221 1999999999999999999999985 6789999999
Q ss_pred HHHHHHHhCcCcc-eeeec---CCC--CC-CCCccccccccchhhhhhcCCCCCCCCChH-HHHHHHHHHHhhccCCcCC
Q psy5277 142 ASQVYHDLLWTGS-YYKFD---SSQ--SR-HSDSIMADQLCGYLFLKASGVNTEAIFPSA-NIARALATIFSTNVRGFEA 213 (314)
Q Consensus 142 ~k~~~~~~lW~~~-~~~~d---~~~--~~-~~~~~~~~ql~gq~~~~~lgl~~~~il~~e-~~~~~l~~v~~~~~~~~~g 213 (314)
+|++|+++||+++ -|.|| ... .+ .|.+++|||++ +++|+ |++++++ +++++++.+.+.++++++-
T Consensus 460 lk~~F~~~FW~~~~g~l~D~v~~d~~~~~~~d~s~RPNql~------A~sL~-~~ll~~~~~~~~vl~~v~~~Lltp~Gl 532 (575)
T TIGR01561 460 VAKNFAEKFINPDGNCLFDLIHQDEAGNQVKDKAIRPNQIF------AISLP-FPIIDDESIAKAILDLIEKDLLRPFGL 532 (575)
T ss_pred HHHHHHHhcCCCCCCeeEEEEecCCCCCcccccccCCCcee------HhhCC-CCCCCHHHHHHHHHHHHHhhccCCccc
Confidence 9999999999854 23333 211 11 37889999998 46676 7899999 9999999999899988621
Q ss_pred Ccccccc-CCCC--CCCCCC--CCCCCCCCCccHH
Q psy5277 214 GSMGAVN-GMKP--NGDRDR--SAIQSEEVWTGVT 243 (314)
Q Consensus 214 G~~G~~~-~~~p--~g~~~~--~~~~~g~vW~~~~ 243 (314)
..+.... ...| .|+.+. .+||+|+||||..
T Consensus 533 RTLsp~d~~Y~p~Y~g~~~~Rd~aYHqGtvWpwl~ 567 (575)
T TIGR01561 533 KSLSRDDPLYKGQYKGDALSRDTAYHNGSLPPWLH 567 (575)
T ss_pred ccCCCCCCCcCCCCCCCccccCCcCcCCCcCccch
Confidence 1111000 0111 132222 4899999999884
No 6
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.5e-29 Score=253.72 Aligned_cols=272 Identities=17% Similarity=0.205 Sum_probs=211.8
Q ss_pred hhHHHHHHhhhhcccccccCC-CCCCcc--cCCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy5277 7 MGEVKFRSAANTHERYYTRWF-PEEEPF--SLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIR 83 (314)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~g~-p~~~p~--~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~ 83 (314)
-+.++|++.|+++.++.+-|. |++++- ...+.|+++|+++| ||+++.+|+++|+|.+|++++||.+..+++
T Consensus 300 g~~elArg~L~~~a~~~~~GkIPhe~~~~~~~~~~Y~tvD~t~~------~i~~~~~y~~~t~d~~~i~e~~~~v~~a~d 373 (641)
T COG3408 300 GRFELARGTLNTLARYSEPGKIPHEILLSIPGEPYYNTVDATPL------FIYLLGAYLKYTGDTEFIRELWPSVGAALD 373 (641)
T ss_pred CCHHHHHHHHHHHHhhccCCCCcchhhhcCCCcceeccCCCcHH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 589999999999999999999 999854 47799999777777 999999999999999999999999999999
Q ss_pred HHHhh-----CCCCCcccccCC---CCc-------------hHHhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy5277 84 KCESF-----DKQGLGIVQNGG---FPD-------------QTAYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKA 142 (314)
Q Consensus 84 ~~~~~-----d~d~dGL~~~~g---~~d-------------~t~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~ 142 (314)
|+.+. +.+++|++.+.. ..| ..+.+|++|++++++...+|.++++.++++++.+.|+++
T Consensus 374 ~~~~~~~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~~~~~~~~~a~~l 453 (641)
T COG3408 374 WILKGFDFGFDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEEDAARLEKIARRL 453 (641)
T ss_pred HHHhcCCccceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 99872 256778887421 011 118899999999999999999999777899999999999
Q ss_pred HHHHHHhCcCc-ceeeecCCCCCCCCccccccccchhhhhhcCCCCCCCCChHHHHHHHHHHHhhccCCcCCCccccccC
Q psy5277 143 SQVYHDLLWTG-SYYKFDSSQSRHSDSIMADQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNG 221 (314)
Q Consensus 143 k~~~~~~lW~~-~~~~~d~~~~~~~~~~~~~ql~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~~~~~~~gG~~G~~~~ 221 (314)
+++|+++||++ .||+.-..+ ++..++++++.+-. ++ .+ ++++++++ .+++.+.+.+++++ |....
T Consensus 454 ~~~F~~~fw~~~~f~dl~~~~--~~~~~r~~~~~a~~---l~-~~--gi~~~~~~-~~~~l~e~~lltp~-----GlRTL 519 (641)
T COG3408 454 KESFEAKFWNPTGFYDLALDD--KDVPIRPNFSNAIH---LL-YT--GIVDPERA-VIIRLAEEDLLTPW-----GLRTL 519 (641)
T ss_pred HHHHHHHhhCccchHhhhccC--CCcccCccceeccc---cc-cc--ccCchHHH-HHHHHHHHhccCCc-----ccccc
Confidence 99999999996 466621111 24567777666311 11 11 66666666 67777777788875 33222
Q ss_pred CCCCCCCCCC-CCCCCCCCccHHHHHHHHHHHCCChH-HHHHHHHHHHHHHHHHhCCCCCCCccccCC-CC-CCCCCchh
Q psy5277 222 MKPNGDRDRS-AIQSEEVWTGVTYLLSAAMLYEGNVD-EAWTTAGGLYRTVYERTGLGFETPEGLTGD-KT-YRSGGYMR 297 (314)
Q Consensus 222 ~~p~g~~~~~-~~~~g~vW~~~~~~lA~~~~~~G~~~-~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~-g~-~~~~~Y~r 297 (314)
. |+...-++ +||+|+|||++|.+++.++.+.|..+ ++.+++++++..+ + ++++||.||+. ++ |++|
T Consensus 520 S-~~dp~Y~p~yYH~GtVWP~~~gifv~g~~r~G~~~~~~~~~~~~~~~~a----~-~~~~pE~f~g~~~~~P~gc---- 589 (641)
T COG3408 520 S-PDDPRYNPMYYHNGTVWPHDTGIFVLGLRRYGLKDIQALELFDGLFSSA----S-PGRIPELFDGDSPNRPKGC---- 589 (641)
T ss_pred C-CCCCCcCCCcccCCCcccchHHHHHHHHHHcCcccHHHHHHHHHHhhhc----c-cCCCcccccccCCCCCCCc----
Confidence 1 21111112 56999999999999999999999888 8888877777554 5 67789999999 56 8899
Q ss_pred hhHHHHHHHHH
Q psy5277 298 ALAVYAMQDAY 308 (314)
Q Consensus 298 ~~~~w~~~~al 308 (314)
.+|+||...-|
T Consensus 590 ~~QAWS~a~~l 600 (641)
T COG3408 590 YPQAWSSAEIL 600 (641)
T ss_pred chhhhhHHHHH
Confidence 99999977654
No 7
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.96 E-value=2.8e-28 Score=254.61 Aligned_cols=281 Identities=14% Similarity=0.105 Sum_probs=212.1
Q ss_pred ccchhhHHHHHHhhhhcccccccCC-CCCCcccCCCccccccCCcccccChhHHHHHHHHHHHhCC-HHH----------
Q psy5277 3 LVWTMGEVKFRSAANTHERYYTRWF-PEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKD-IRF---------- 70 (314)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~-p~~~p~~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD-~~f---------- 70 (314)
++-|-|.+.|+.++.+|.++++.|+ ||.+|.+..+.||+.|+++| ||.++++|++.++| .++
T Consensus 1050 lL~tGR~~eAk~ii~~fa~~lr~GLIPNll~~G~~prYNt~DA~lW------fi~AIqdY~~~~~dg~~iL~~~v~R~fp 1123 (1464)
T TIGR01531 1050 LLTTGRFDEARAIILAFAGTLRHGLIPNLLDEGINPRYNCRDAAWF------WLQCIQDYVEIVPNGEKILKDPVRRIYP 1123 (1464)
T ss_pred eeccCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCccHHHH------HHHHHHHHHHHcCCHHHhhhcccccccc
Confidence 4557799999999999999999999 99999987889999888888 99999999999999 455
Q ss_pred ------------HHHHHHHHHHHHHHHHh-------------------------hCCC-CCcccccCC------CCch--
Q psy5277 71 ------------LTRVYPTCLELIRKCES-------------------------FDKQ-GLGIVQNGG------FPDQ-- 104 (314)
Q Consensus 71 ------------l~~~~p~vk~al~~~~~-------------------------~d~d-~dGL~~~~g------~~d~-- 104 (314)
.+.+++.++.+++++.+ ..+| ++||+..+. .+|-
T Consensus 1124 ~Ddt~~~~~~~~~~~l~~~iqeIl~~h~~G~~fRE~NAGp~iD~~M~deGfn~~I~vD~~~GLI~gGn~~ncgTWMDkmg 1203 (1464)
T TIGR01531 1124 DDDSIPVDDGRADQYLFEVIYEALQKHFQGIQFRERNAGPQIDRVMTDEGFNVTIGVDWETGFIYGGNRFNCGTWMDKMG 1203 (1464)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHcCCccccccccccchhhhccccccceEEEcCCCCcEecCCCCCCCCCcCCCC
Confidence 45678899999999874 1144 689988542 1220
Q ss_pred ------------H------HhHHHHHHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHHHHHhCcCcc--eeeec
Q psy5277 105 ------------T------AYCGGLHIAALACMVEMSSLL-----NDTQQQQQFSAKLTKASQVYHDLLWTGS--YYKFD 159 (314)
Q Consensus 105 ------------t------~~~~al~y~AL~~~a~lA~~l-----G~~~~a~~~~~~a~~~k~~~~~~lW~~~--~~~~d 159 (314)
| +++|||||+||+.+++|++.. |++.....|++++++++++|+++||+++ .+.||
T Consensus 1204 ~SekA~~~G~p~TPRdG~aVEInaLwynAL~~~~~l~~~~~~~~~g~~~~~~~~~~wa~~ik~~Fe~~F~~~~~~~~lyD 1283 (1464)
T TIGR01531 1204 ESEKAGNKGIPATPRDGAAVEIVGLLKSALRFLIELKEKGVFKRSGVETQKWSYIEWNQKIQDNFEKRFFVDESQDADYD 1283 (1464)
T ss_pred cccccccCCcccCCCCCCceeHHHHHHHHHHHHHHHHHhcCcCcCCcccchhhHHHHHHHHHHHHhhhcCCCcccCcccc
Confidence 1 999999999999999999987 7654456799999999999999999832 23343
Q ss_pred CCC---------------CC--CCCccccccccchhhhhhcCCCCCCCCChHHHHHHHHHHHhhccCCcCCCccccccC-
Q psy5277 160 SSQ---------------SR--HSDSIMADQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNG- 221 (314)
Q Consensus 160 ~~~---------------~~--~~~~~~~~ql~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~~~~~~~gG~~G~~~~- 221 (314)
..+ .. .|.+++|||++ +++|+ +.++++++++++|+.+ +.+++++ |....
T Consensus 1284 v~~~~vnrrgIykD~~~s~~~~~D~qlRPN~~i------A~sla-~~l~~~~~a~~~L~~v-~~LltP~-----GlRTLd 1350 (1464)
T TIGR01531 1284 VAKLGVNRRGIYKDSYGSTKPWTDYQLRPNFAI------AMTVA-PELFVPEKAWKALTIA-EVLLGPL-----GMKTLD 1350 (1464)
T ss_pred ccchhhccccccccccCCCCCCCCcccCCCceE------EEeCC-cccCCHHHHHHHHHHH-HHhccCC-----ccccCC
Confidence 321 11 37889999998 46776 6899999999999999 8788885 33211
Q ss_pred -----CCC--CCCCCC--------CCCCCCCCCccHH--HHHHHHHHHCCC---hH------HHHHHHHHHHHHHHHHhC
Q psy5277 222 -----MKP--NGDRDR--------SAIQSEEVWTGVT--YLLSAAMLYEGN---VD------EAWTTAGGLYRTVYERTG 275 (314)
Q Consensus 222 -----~~p--~g~~~~--------~~~~~g~vW~~~~--~~lA~~~~~~G~---~~------~A~~l~~~~~~~~~~~~g 275 (314)
++| .|+.+. .+||+|.+|+|.. |.-|...+ .+. .+ ...+++..+.+++ .+.+
T Consensus 1351 P~D~~Y~g~Y~g~~dsrD~~t~kg~aYHqG~eW~WllG~fl~A~lk~-~~~~~~~~~~~~~~~~~~~L~~~~~~l-~~~~ 1428 (1464)
T TIGR01531 1351 PSDWNYRGYYNNGEDSDDFATAKGRNYHQGPEWVWPIGYFLRARLHF-HFKTGPRCQAAAIKPVSYLLQQLYYHL-KESP 1428 (1464)
T ss_pred CCCcCCCCccCCchhhccccccccccccCCCcCccchhHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHHHHH-HhcC
Confidence 111 132221 3889999999995 44443332 232 22 3355666777777 5566
Q ss_pred CCCCCCccccCCCC--CCCCCchhhhHHHHHHHHHc
Q psy5277 276 LGFETPEGLTGDKT--YRSGGYMRALAVYAMQDAYL 309 (314)
Q Consensus 276 ~~~~~PE~~~~~g~--~~~~~Y~r~~~~w~~~~al~ 309 (314)
.+.+||+++++|. +++| +.|+||+.+.|.
T Consensus 1429 -~g~l~El~dgdgp~~~~gc----~aQAWSvaelLr 1459 (1464)
T TIGR01531 1429 -WRGLPELTNKDGEYCNDSC----PTQAWSVACLLE 1459 (1464)
T ss_pred -CCCcccccCCCCCCCCCCC----HHHHHHHHHHHH
Confidence 6889999999964 6678 999999988774
No 8
>PRK10137 alpha-glucosidase; Provisional
Probab=99.88 E-value=1.9e-20 Score=189.83 Aligned_cols=239 Identities=13% Similarity=0.142 Sum_probs=172.8
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh-hCCCCCccccc-------------------------------
Q psy5277 51 NLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCES-FDKQGLGIVQN------------------------------- 98 (314)
Q Consensus 51 ~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~-~d~d~dGL~~~------------------------------- 98 (314)
+|++.++++++|++|+|.+||+++||++.++++|..+ .|.|++||++-
T Consensus 419 PPL~a~av~~vy~~t~d~~fl~~lyPkL~a~h~Ww~~~RD~dg~Gl~eY~~~~~~~h~~~~g~~~~~i~~~~~~~~~~G~ 498 (786)
T PRK10137 419 PSLAAWSVMEVYNVTQDKAWLAEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTESGEMLFTVKKGDKEETQSGL 498 (786)
T ss_pred cCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCCCCceeEeecccccccccccccccccccccccccccccc
Confidence 6999999999999999999999999999999999988 67889999991
Q ss_pred -----------------------CC--CCch-----------------------------------------------HH
Q psy5277 99 -----------------------GG--FPDQ-----------------------------------------------TA 106 (314)
Q Consensus 99 -----------------------~g--~~d~-----------------------------------------------t~ 106 (314)
++ ..|+ .+
T Consensus 499 ~n~~~~~~~~~~~~~~~~~~~~~~WESGmDNap~f~~i~~~~~~~y~r~~y~r~~~~V~~~~~~~~dg~l~~~p~~~e~V 578 (786)
T PRK10137 499 NNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESV 578 (786)
T ss_pred ccccccccccccccccccccccCCCCCCCCCccccccccccccchhhhccccccceeeeehhcccCCCCccCCCCcCCCH
Confidence 11 0220 17
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCcc---eeeecCCCCCC-----CCcccc-ccccch
Q psy5277 107 YCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTGS---YYKFDSSQSRH-----SDSIMA-DQLCGY 177 (314)
Q Consensus 107 ~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~~---~~~~d~~~~~~-----~~~~~~-~ql~gq 177 (314)
.+|+++|.+.+.+++||+.+|+++.+++|+++|++++++|++.|||++ ||++|....+. ...+.. ..-.+.
T Consensus 579 DLNsyLy~a~~~LA~LAe~LG~~e~A~~~~~~A~~Lr~aIn~~~WDee~GfY~DydL~~~~~~~~~~g~~i~~~~~~~ag 658 (786)
T PRK10137 579 DQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDETTGFYYDVRIEDKPLANGCAGKPIVERGKGPEG 658 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccCCcCCeEEEEecCcccccccccCcceeeeccCccc
Confidence 789999999999999999999999999999999999999999999853 45576542110 111111 111224
Q ss_pred hhhhhcCCCCCCCCChHHHHHHHHHHHhhccCCcCCCccccccCCCCCCCC--CCCCCCCCCCCccHHHHHHHHHHHCCC
Q psy5277 178 LFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDR--DRSAIQSEEVWTGVTYLLSAAMLYEGN 255 (314)
Q Consensus 178 ~~~~~lgl~~~~il~~e~~~~~l~~v~~~~~~~~~gG~~G~~~~~~p~g~~--~~~~~~~g~vW~~~~~~lA~~~~~~G~ 255 (314)
++++++ |++++++++++++.+.+.. .|.+ .+|.+... + ..+ +...+..|.||+.++|+++.+|.++|.
T Consensus 659 f~PLwa-----Gia~~eqA~~VV~~L~~p~--~F~t-~~GipTlS-~-s~p~ydp~~YWRGpVWpp~N~Li~~GL~rYG~ 728 (786)
T PRK10137 659 WSPLFN-----GAATQANADAVVKVMLDPK--EFNT-FVPLGTAA-L-TNPAFGADIYWRGRVWVDQFYFGLKGMERYGY 728 (786)
T ss_pred hhhccC-----CCCCHHHHHHHHHHhcChh--hcCC-CCCccCcC-C-CccccCCCCCCCCCcCHhHHHHHHHHHHHcCC
Confidence 555555 5679999999999886422 1211 12221111 1 112 223678899999999999999999999
Q ss_pred hHHHHHHHHHHHHHH--HHHhCCCCCCCccccCC-CCCCCCCchhhhHHHHHHH
Q psy5277 256 VDEAWTTAGGLYRTV--YERTGLGFETPEGLTGD-KTYRSGGYMRALAVYAMQD 306 (314)
Q Consensus 256 ~~~A~~l~~~~~~~~--~~~~g~~~~~PE~~~~~-g~~~~~~Y~r~~~~w~~~~ 306 (314)
.++|.+|.+.+++++ +.+.|. +-|.|+.. |...+. ..-+|+-..
T Consensus 729 ~e~A~~La~~ll~~a~~l~~tG~---~~E~YDp~TGeg~Ga----~~FSWTAAv 775 (786)
T PRK10137 729 RDDALKLADTFFRHAKGLTADGP---IQENYNPLTGAQQGA----PNFSWSAAH 775 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc---eEEeECCCCCcccCC----CCCChHHHH
Confidence 999999999999854 133443 66999876 664443 233676443
No 9
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=99.86 E-value=1.9e-20 Score=189.70 Aligned_cols=227 Identities=11% Similarity=0.095 Sum_probs=165.4
Q ss_pred ccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhCCCCCcccccCC------CCchHHhHHHHHHHHHHHHHHH
Q psy5277 49 DLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFDKQGLGIVQNGG------FPDQTAYCGGLHIAALACMVEM 122 (314)
Q Consensus 49 D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~d~d~dGL~~~~g------~~d~t~~~~al~y~AL~~~a~l 122 (314)
|.....++++++|++.|||.+|++++||.++++++|+.++. +. +++..+- .... +++++++|+||+++++|
T Consensus 353 D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~-~~-~l~~~~~~lWEer~G~~-~~t~a~~~aAL~~aa~l 429 (616)
T TIGR01577 353 DETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFI-DP-ETPLPCRDLWEEREGVF-TYTASAVYGGLDAAAAV 429 (616)
T ss_pred cchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhc-cC-CCCCCCCccceecCCcc-CccHHHHHHHHHHHHHH
Confidence 33444788999999999999999999999999999998852 22 2333210 0112 78899999999999999
Q ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhCcCc--ceee--ecCCCCCCCCccccccccchhhhhhcCCCCCCCC--ChHHH
Q psy5277 123 SSLLNDTQQQQQFSAKLTKASQVYHDLLWTG--SYYK--FDSSQSRHSDSIMADQLCGYLFLKASGVNTEAIF--PSANI 196 (314)
Q Consensus 123 A~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~--~~~~--~d~~~~~~~~~~~~~ql~gq~~~~~lgl~~~~il--~~e~~ 196 (314)
|+.+|+++.+++|++.|++++++|++++|++ ++|. ++... .+..+.++-+. +.+ +||++ +++++
T Consensus 430 A~~lGd~~~a~~~~~~Ad~ik~~i~~~~w~~~~g~F~~~~~~~~--~~~~vDaSlL~-------l~~-~~g~l~~~Dpr~ 499 (616)
T TIGR01577 430 ADKLGEKRLAQNWKKAAEFIKRAVEERFWLPERQVFAKGIKLMV--LDKTIDISILG-------ISV-PFNLIAPDDERM 499 (616)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeecCCC--CCCcccHHHHh-------HHH-hcCCCCCCChHH
Confidence 9999999889999999999999999999974 3444 44321 23344444221 111 14544 47788
Q ss_pred HHHHHHHHhhccCCcCCCccccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHCCChH-------------HHHHHH
Q psy5277 197 ARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAMLYEGNVD-------------EAWTTA 263 (314)
Q Consensus 197 ~~~l~~v~~~~~~~~~gG~~G~~~~~~p~g~~~~~~~~~g~vW~~~~~~lA~~~~~~G~~~-------------~A~~l~ 263 (314)
.++++.|.+.+.++-.||...+ + + ..++.|++|+.+|+|+|..+++.|+.+ +|.+++
T Consensus 500 v~Tv~~I~~~L~~~~~ggi~RY-----~-~----D~y~~g~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll 569 (616)
T TIGR01577 500 VKMAEAIEKHLTSPIVGGIKRY-----E-N----DPYVGGNPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLL 569 (616)
T ss_pred HHHHHHHHHHhcccCCCeeeCC-----C-C----CCCCCCCcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHH
Confidence 8899999987754422222211 1 1 134467999999999999999988765 899999
Q ss_pred HHHHHHHHHHhCCCCCCCccccCC-CCCCCCCchhhhHHHHHHH
Q psy5277 264 GGLYRTVYERTGLGFETPEGLTGD-KTYRSGGYMRALAVYAMQD 306 (314)
Q Consensus 264 ~~~~~~~~~~~g~~~~~PE~~~~~-g~~~~~~Y~r~~~~w~~~~ 306 (314)
+++.++. ...|+ +||+++.. |.|.+- .+++||-..
T Consensus 570 ~~~~~~~-~~~Gl---l~Eqvd~~~g~~~g~----~Pl~wSHa~ 605 (616)
T TIGR01577 570 KWVMDHR-TDLGL---LPEQVDKETGKPAWA----VPLGWSHAM 605 (616)
T ss_pred HHHHhcC-CCCCC---CccccCCCCCCCCCc----CCcccchHH
Confidence 9999887 55665 99999975 887765 677786443
No 10
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=99.68 E-value=4.9e-16 Score=154.32 Aligned_cols=254 Identities=17% Similarity=0.189 Sum_probs=154.0
Q ss_pred HHHHhhhhccccc-ccCC-CCCCcccCCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhh
Q psy5277 11 KFRSAANTHERYY-TRWF-PEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESF 88 (314)
Q Consensus 11 ~~~~~~~~~~~~~-~~g~-p~~~p~~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~ 88 (314)
..+..+..+.... ..|. |...|... ........| ++.+|+.+++||++|||.+||+++||.+++.|+|+.++
T Consensus 170 l~~~~l~~~~~~q~~~G~~p~~~P~~~---~~~~~~~~w---~l~~i~~~~~~y~~tGD~~~l~~~~~~~~~~l~~~~~~ 243 (509)
T PF05592_consen 170 LYRKWLRDFADSQRPDGLLPSVAPSYG---GGGFGIPDW---SLAWIIIPWDYYLYTGDREFLEEYYPAMKRYLDYLERR 243 (509)
T ss_dssp HHHHHHHHHHGGTTTSTT-SSBSS------SSGGGBHHH---HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhcccCCceEEecccC---CCCCCCccH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566555555 3455 77666533 222333334 44599999999999999999999999999999999986
Q ss_pred CCCCCcccc--cCCCCch-------------HHhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCc
Q psy5277 89 DKQGLGIVQ--NGGFPDQ-------------TAYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTG 153 (314)
Q Consensus 89 d~d~dGL~~--~~g~~d~-------------t~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~ 153 (314)
. ++ |+.. ..+..|| .+..|+++|.+|+++++||+.+|+++++++|+++|+++|++|+++|||.
T Consensus 244 ~-~~-~~~~~~~~~~~DW~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~~~~~d~ 321 (509)
T PF05592_consen 244 V-DD-GLDGLPGWGFGDWLAPGNDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLKAAINRHFWDP 321 (509)
T ss_dssp B--T-SSB-CCSB--S-SS----TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHCEET
T ss_pred C-Cc-cccCCCCCceeecCCccCcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 3 33 3221 1111121 1557999999999999999999999999999999999999999999964
Q ss_pred ceeeecCCCCCCCCccccccccchhhhhhcCCCCCCCCChHHH-HHHHHHHHhhccCCcCCCccccccCCCCCCCCCCCC
Q psy5277 154 SYYKFDSSQSRHSDSIMADQLCGYLFLKASGVNTEAIFPSANI-ARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSA 232 (314)
Q Consensus 154 ~~~~~d~~~~~~~~~~~~~ql~gq~~~~~lgl~~~~il~~e~~-~~~l~~v~~~~~~~~~gG~~G~~~~~~p~g~~~~~~ 232 (314)
+-..+.. ..... +.+++.+ |++++++. ..+++.+.+.. ... +. . +.
T Consensus 322 ~~g~~~~-------~sq~~----~alAl~~-----gl~p~~~~~~~~~~~l~~~~-~~~-----~~----~----~~--- 368 (509)
T PF05592_consen 322 EKGGYAD-------GSQHA----NALALLF-----GLVPEEERAAAALKRLAKRI-AAN-----GY----H----LS--- 368 (509)
T ss_dssp TTTEECT-------TSHCH----HHHCHHC-----CHC-HHHHTCHCHCHCHHCC-HCC-----CH----S---------
T ss_pred ccCcccC-------CchHH----HHHHHHh-----chhhhhhhHHHHHHHHHHHH-Hhc-----CC----C----cC---
Confidence 3222211 12222 3345554 56776655 55555544311 110 10 0 11
Q ss_pred CCCCCCCccHHHHHHHHHHHCCChHHHHHHHHH----HHHHHHHHhCCCCCCCccccC---CCCCC-CCCchhhhHHHHH
Q psy5277 233 IQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGG----LYRTVYERTGLGFETPEGLTG---DKTYR-SGGYMRALAVYAM 304 (314)
Q Consensus 233 ~~~g~vW~~~~~~lA~~~~~~G~~~~A~~l~~~----~~~~~~~~~g~~~~~PE~~~~---~g~~~-~~~Y~r~~~~w~~ 304 (314)
.|.+ .+..+...+.++|..+.|.+++.. .+..+ -..| .-.++|.|++ .+..+ -+|.+..-.+.-+
T Consensus 369 --~g~~---g~~~~~~~L~~~g~~~~a~~~~~~~~~~~w~~m-l~~g-~tT~wE~w~~~~~~~~~~S~~H~w~~~p~~~l 441 (509)
T PF05592_consen 369 --TGFI---GSPYLLEALFRAGRADGAYDLLTQRDYPSWGYM-LDQG-ATTLWEYWDGDGGDPPNRSLCHAWSAGPTYWL 441 (509)
T ss_dssp --TCCC----CHHHHHHHHHCCHHCCHHHHHHHHHHHHCHHH-HCTT--SS--SS-STT-TCTT-S-SSBGGG-THHHHH
T ss_pred --cccc---cHHHHHHHHHHcCCHHHHHHHHHhccccchhHH-HhCC-CCEEEEecCccCCCCCCCCCCCCcchhHHHHH
Confidence 1111 122356678888988888888765 34444 2345 4567999996 22333 4899988888778
Q ss_pred HHHHccCC
Q psy5277 305 QDAYLKGK 312 (314)
Q Consensus 305 ~~al~~~~ 312 (314)
..-+-|++
T Consensus 442 ~~~v~GI~ 449 (509)
T PF05592_consen 442 YRYVLGIR 449 (509)
T ss_dssp HHCTS-EE
T ss_pred HHHhhceE
Confidence 88777764
No 11
>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=2.3e-15 Score=152.06 Aligned_cols=245 Identities=15% Similarity=0.177 Sum_probs=171.5
Q ss_pred cchhhHHHHHHhhhhcccccccCC-CCCCcccCCCcccc-ccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHH-----
Q psy5277 4 VWTMGEVKFRSAANTHERYYTRWF-PEEEPFSLINGYNV-FDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYP----- 76 (314)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~-p~~~p~~~~~~y~~-~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p----- 76 (314)
+-.+-...-..+|+++.|=...|. |. |-.+..|-. .--+..+|+..|.+.++-+|.+.|||.++|+|..|
T Consensus 625 ~~~~p~~aR~qIl~~as~Qf~eGd~~h---Wf~p~t~ag~qir~~~sDdvvWl~~a~~~Yl~~TGD~aILdE~iPf~~~~ 701 (1056)
T COG3459 625 LLARPALARKQILDAASRQFVEGDVQH---WFLPDTYAGVQIRTSISDDVVWLLKAIADYLKETGDAAILDEVIPFIDGP 701 (1056)
T ss_pred hhcCHHHHHHHHHHHHhhcccCCCccc---cccccccccchhhcccCCceeeeHHHHHHHHHhcCcHhhhhccccccCCC
Confidence 334434444567777776665577 66 433333333 12234478888899999999999999999987766
Q ss_pred --------------HHHHHHHHHHhhCCCCCcccccCCCCchH--------------HhHHHHHHHHHHHHHHHHHHcCC
Q psy5277 77 --------------TCLELIRKCESFDKQGLGIVQNGGFPDQT--------------AYCGGLHIAALACMVEMSSLLND 128 (314)
Q Consensus 77 --------------~vk~al~~~~~~d~d~dGL~~~~g~~d~t--------------~~~~al~y~AL~~~a~lA~~lG~ 128 (314)
+|++++++...+ ....|||...| +||- +..+-+++.+|+...+||+.+|+
T Consensus 702 ~l~~~s~e~~TLyEH~~rAld~av~r-~g~~glpli~g-GDWND~ln~vg~~g~geSv~lgW~l~~tlq~F~~lak~r~d 779 (1056)
T COG3459 702 ALPEFSKEQATLYEHCARALDLAVAR-LGPHGLPLILG-GDWNDGLNLVGNGGKGESVWLGWFLALTLQTFKELAKARGD 779 (1056)
T ss_pred ccccccccchhHHHHHHHHHHHHHHh-cCCCCcccccC-CcccccccccccCCccceeehhhHHHHHHHHHHHHHHhcCc
Confidence 699999999876 56788888654 3331 66777899999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhCcCcceee---ecCCCC---CCCCccccccccchhhhhhcCCCCCCCCChHHHHHHHHH
Q psy5277 129 TQQQQQFSAKLTKASQVYHDLLWTGSYYK---FDSSQS---RHSDSIMADQLCGYLFLKASGVNTEAIFPSANIARALAT 202 (314)
Q Consensus 129 ~~~a~~~~~~a~~~k~~~~~~lW~~~~~~---~d~~~~---~~~~~~~~~ql~gq~~~~~lgl~~~~il~~e~~~~~l~~ 202 (314)
.+.+.+|.+.++.+++++....|||+||+ +|.... +.+..|+.+. .+|-|+++.| ..++++++++|+.
T Consensus 780 ~~r~~~~~~~~ea~~~~~~~~~wDg~wy~r~~~d~g~~lgs~e~~E~qI~~-i~qs~sVlSg-----~gd~~ra~kaMd~ 853 (1056)
T COG3459 780 EARADTWAKHVEALREALETNGWDGEWYRRGYGDDGTPLGSPEDEECQIDS-IPQSWSVLSG-----EGDKERAEKAMDS 853 (1056)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceEEeccccCCCcccCCCCcccceee-eccchhhhhC-----CCChHHHHHHHHH
Confidence 99999999999999999999999999987 332221 2344455444 5688888764 5689999999999
Q ss_pred HHhhccCCcCC-----------CccccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHCCChHHHHHHHHH
Q psy5277 203 IFSTNVRGFEA-----------GSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGG 265 (314)
Q Consensus 203 v~~~~~~~~~g-----------G~~G~~~~~~p~g~~~~~~~~~g~vW~~~~~~lA~~~~~~G~~~~A~~l~~~ 265 (314)
|.++++.+++- +..|...+. |.|..++...++| -+-|+..++.+.|+.++|.++.+.
T Consensus 854 v~k~L~~pdgvrL~tppf~~~~~~~gyiK~y-~pgvREnGgQYtH-----a~~w~i~Alak~G~a~eAw~~f~~ 921 (1056)
T COG3459 854 VMKYLVDPDGVRLFTPPFSYTKGDPGYIKRY-PPGVRENGGQYTH-----AATWVILALAKMGRADEAWELFDK 921 (1056)
T ss_pred HHHhccCccccEecCCcccccCCCCCeeecC-Ccccccccceeec-----ccHHHHHHHHhhccHHHHHHHHHh
Confidence 99999888631 111111111 1133443333333 222345567777999999998544
No 12
>PRK13271 treA trehalase; Provisional
Probab=99.63 E-value=8.1e-14 Score=138.11 Aligned_cols=249 Identities=12% Similarity=0.068 Sum_probs=174.5
Q ss_pred hHHHHHHhhhhccccc-ccCC-CCCCcccCCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q psy5277 8 GEVKFRSAANTHERYY-TRWF-PEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKC 85 (314)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~~g~-p~~~p~~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~ 85 (314)
+.+.+++|++-|.--+ ..|. ||. ..-.|.. -.-+|+|..+|..|+..|+| +||++..|.+++=.+|-
T Consensus 177 ~~~~a~~mi~Nf~~~i~~yG~IPNg----~R~YYl~------RSQPP~l~~Mv~~~~~~~~~-~~l~~~lp~l~kEy~~W 245 (569)
T PRK13271 177 HWDKVADMVANFAHEIDTWGHIPNG----NRSYYLS------RSQPPFFALMVELLAQHEGD-AALKQYLPQMQKEYAYW 245 (569)
T ss_pred CHHHHHHHHHHHHHHHHHhCcCcCC----chhhccc------CCCChhHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHH
Confidence 4578899999887777 5588 983 2234555 56678899999999999998 69999999999999888
Q ss_pred HhhC---------------CCCCcccc---------------------------------------cCCCCchH------
Q psy5277 86 ESFD---------------KQGLGIVQ---------------------------------------NGGFPDQT------ 105 (314)
Q Consensus 86 ~~~d---------------~d~dGL~~---------------------------------------~~g~~d~t------ 105 (314)
++.. .++.+|-. +|| .|-+
T Consensus 246 m~~~~~~~~~~~~~r~v~~~~~~~L~rY~~~~~~PRpEsy~eD~~~a~~~~~~~~~~~y~~l~a~aESG-wDfSsRw~~~ 324 (569)
T PRK13271 246 MEGVENLQPGQQEKRVVKLQDGTLLNRYWDDRDTPRPESWVEDIATAKSNPNRPATEIYRDLRSAAASG-WDFSSRWMDN 324 (569)
T ss_pred hCCCcccCccccccceEEeCCCCcccccccCCCCCCCCcHHHHHHHHhhCCcchHHHHHHHHHHHhhcC-CcchhhhccC
Confidence 7521 12333321 001 0000
Q ss_pred --------------HhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCcc---eeeecCCCCCCCCc
Q psy5277 106 --------------AYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTGS---YYKFDSSQSRHSDS 168 (314)
Q Consensus 106 --------------~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~~---~~~~d~~~~~~~~~ 168 (314)
+.+|+++|.+.+.++++|+.+|+++.+++|+++|++.+++|++.|||++ ||+||..+..
T Consensus 325 ~~~l~~i~t~~IiPVDLNALLy~ae~~LA~la~~lGd~~~A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl~~~~---- 400 (569)
T PRK13271 325 PQQLNTIRTTSIVPVDLNALMFKMEKILARASKAAGDNAMANQYETLANARQKAIEKYLWNDKEGWYADYDLKSHK---- 400 (569)
T ss_pred CccccccccccccCchHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhcccCCCCEEEEEECCCCC----
Confidence 7889999999999999999999998899999999999999999999843 6778765321
Q ss_pred cccccccchhhhhhcCCCCCCCCChHHHHHHHHHHHhhccCCcCCCccccccCCCCCCCCCCCCCCCCCCCccHHHHHHH
Q psy5277 169 IMADQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSA 248 (314)
Q Consensus 169 ~~~~ql~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~~~~~~~gG~~G~~~~~~p~g~~~~~~~~~g~vW~~~~~~lA~ 248 (314)
.+.......++++.+ |++++++++++++.+.+.++++ .|.+.....+|.- -..-++|+-+++++..
T Consensus 401 ~r~~~saa~f~PLwa-----g~a~~~qA~~Vv~~l~~~Ll~p-----gGLpTt~~~SgqQ----WD~PngWaPlq~iiie 466 (569)
T PRK13271 401 VRNQLTAAALFPLYV-----NAAAKDRANKVAAATKTHLLQP-----GGLNTTSVKSGQQ----WDAPNGWAPLQWVATE 466 (569)
T ss_pred EeechhHHHHHhhhc-----CCCCHHHHHHHHHHHHHhcCCC-----CCccCCCCCCCCC----CcCcccCHhHHHHHHH
Confidence 111122233445555 5678899999999886655443 1332221111100 0111579999999999
Q ss_pred HHHHCCChHHHHHHHHHHHHHHHHHhCCCCCCCccccC
Q psy5277 249 AMLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTG 286 (314)
Q Consensus 249 ~~~~~G~~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~ 286 (314)
++.++|..+.|.+|....++.....+.-.+.+-|-|+.
T Consensus 467 GL~~yG~~~lA~~la~rwl~~~~~~~~~~g~m~EKYd~ 504 (569)
T PRK13271 467 GLQNYGQKEVAMDVTWRFLTNVQHTYDREKKLVEKYDV 504 (569)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhcccCceEEeeCC
Confidence 99999999999999988877763333223446787875
No 13
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=99.62 E-value=2.6e-14 Score=141.65 Aligned_cols=252 Identities=16% Similarity=0.158 Sum_probs=168.0
Q ss_pred hHHHHHHhhhhccccc-ccCC-CCCCcccCCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q psy5277 8 GEVKFRSAANTHERYY-TRWF-PEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKC 85 (314)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~~g~-p~~~p~~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~ 85 (314)
..+.+++|++-|...+ +.|. ||. ..-.|.. -.-+|+|..+|..+|+.|+|.+|+++.+|.+.+-++|-
T Consensus 146 ~~~~a~~mi~Nf~~~i~~yGfipNg----~R~Yyl~------RSQPPlla~mV~~~y~~t~d~~~l~~~lp~L~ke~~fW 215 (512)
T PF01204_consen 146 MYETAKGMIENFLYLIDRYGFIPNG----NRTYYLN------RSQPPLLAQMVREYYEATKDKAFLREALPALEKEYEFW 215 (512)
T ss_dssp -HHHHHHHHHHHHHHHHHHSS--SB----SBGGGTT---------S--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCcCCCC----ccHHhcc------CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4568889998887777 4588 983 2234444 56788899999999999999999999999999999998
Q ss_pred Hh--hCCCCCcccc-----------cC-----------------------------------C-------C----CchH-
Q psy5277 86 ES--FDKQGLGIVQ-----------NG-----------------------------------G-------F----PDQT- 105 (314)
Q Consensus 86 ~~--~d~d~dGL~~-----------~~-----------------------------------g-------~----~d~t- 105 (314)
++ +.+...|+.. .+ | . .+.+
T Consensus 216 ~~~~r~~~~~~~~~~~~l~ry~~~~~~prpEsy~eD~~~a~~~~~~~~~~~~y~~i~saaESGwDfssRw~~~sg~d~~~ 295 (512)
T PF01204_consen 216 MDNNRDVRVTGLGKGYGLNRYGDPWNSPRPESYREDVETAENFPSERDKEELYRDIASAAESGWDFSSRWFRDSGFDNSN 295 (512)
T ss_dssp CCCEEETTEEEECTSEECCHHHHCHHCT-CCCCCHHHHHHHCHCHTSTCHHHHCHHHHHHHCCHHCTGGGBSSECCEE-T
T ss_pred CCCCcceeecCCCccCCcccccCCCCCCcchHHHhhHHHHHhhcccchHHHHhhcccchhhhhhhccceeeecCCCchhh
Confidence 82 3233233321 00 0 0 0000
Q ss_pred -----------HhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCc---ceeeecCCCCCCCCcccc
Q psy5277 106 -----------AYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTG---SYYKFDSSQSRHSDSIMA 171 (314)
Q Consensus 106 -----------~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~---~~~~~d~~~~~~~~~~~~ 171 (314)
+-.|++.|...+.+++||+.+|+.+.++.|+++|++.+++|++.|||+ .||+||........
T Consensus 296 l~~~~t~~iipVDLNa~L~~~e~~LA~~a~~lG~~~~a~~~~~~A~~~~~aI~~~lWdee~g~~~Dyd~~~~~~~~---- 371 (512)
T PF01204_consen 296 LFTIRTTDIIPVDLNAILYRNEKDLAEFAELLGDQEKAEEYRQRAEERKEAINQYLWDEEDGFYYDYDLRTGKRSP---- 371 (512)
T ss_dssp CHHCECCCEE-HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHTEETTTTEE--EETTTTEEGG----
T ss_pred hhccceeeecCchHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhCccCCCCeEEeeeCCCCCCcc----
Confidence 677999999999999999999999999999999999999999999983 47888875432122
Q ss_pred ccccchhhhhhcCCCCCCCCChHHHHHHHHHHHhhccCCcCCCccccccCCCCCCCCCCCCCCCC------CCCccHHHH
Q psy5277 172 DQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSE------EVWTGVTYL 245 (314)
Q Consensus 172 ~ql~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~~~~~~~gG~~G~~~~~~p~g~~~~~~~~~g------~vW~~~~~~ 245 (314)
......++++.+ ++.+++++.++++++.+.... + |. +.+.|++..+.+.++ ++|+-++++
T Consensus 372 ~~~~a~f~PL~a-----g~a~~~qa~~~~~~~l~~~~~-~-----~~---l~~~~g~~ts~~~~~~qWD~Pn~WaPlq~~ 437 (512)
T PF01204_consen 372 VFSPANFLPLWA-----GIASPEQAERLVARALDYLER-S-----GL---LTFPGGIPTSLYDTGQQWDGPNVWAPLQWM 437 (512)
T ss_dssp --BGGGGHHHHT-----T-S-HHHHHHHHHHHHHHCTT-C-----CS---SC-CSECTTCTTTTTSTTSTTEEEHHHHHH
T ss_pred cccHHHHHHHHH-----hhcCHhhhhhHHHHHHHHHHh-c-----CC---cccCCCCCCccccccccCCCCCccHhHHHH
Confidence 222335667777 557899988877777664322 1 11 110122222222222 479999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHHhCCCCCCCccccCC
Q psy5277 246 LSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGD 287 (314)
Q Consensus 246 lA~~~~~~G~~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~ 287 (314)
+..++.++|..+.|.+|++..++.....+-=.+.+-|-|+..
T Consensus 438 ~i~GL~~yG~~~lA~~la~rwl~~~~~~~~~~g~m~EKYd~~ 479 (512)
T PF01204_consen 438 AIEGLRRYGYRELARRLAQRWLRLNYKVFKRTGKMFEKYDVE 479 (512)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHCCCCCSSEBSEEETT
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhcCchhccccce
Confidence 999999999999999999998888743222124467877765
No 14
>PLN02567 alpha,alpha-trehalase
Probab=99.57 E-value=9.2e-13 Score=131.07 Aligned_cols=250 Identities=15% Similarity=0.203 Sum_probs=169.7
Q ss_pred HHHHHHhhhhccccc-ccCC-CCCCcccCCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Q psy5277 9 EVKFRSAANTHERYY-TRWF-PEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCE 86 (314)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~g~-p~~~p~~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~ 86 (314)
.+.+++|++.|..-+ ..|+ ||.- .-.|.. -.-+|++..++..+|+.|+|.+||++++|.+.+-++|.+
T Consensus 171 ~~~A~~mi~Nf~~~i~~~GfIPNg~----R~Yyl~------RSQPPlla~mV~~~~~~t~d~~~l~~~lp~L~~E~~~W~ 240 (554)
T PLN02567 171 YETAKGVVENLLYLVDTYGFVPNGA----RAYYTN------RSQPPLLSAMVLAVYAATKDVELVRRALPALLKEHAFWT 240 (554)
T ss_pred HHHHHHHHHHHHHHHHHcCcCCCCC----cccccC------CCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 578999999888888 5588 9832 234433 566789999999999999999999999999999999987
Q ss_pred hh-C----CCCC----ccccc----------------------------------------CCCCch-------------
Q psy5277 87 SF-D----KQGL----GIVQN----------------------------------------GGFPDQ------------- 104 (314)
Q Consensus 87 ~~-d----~d~d----GL~~~----------------------------------------~g~~d~------------- 104 (314)
+. . .+++ +|..- +| .|.
T Consensus 241 ~~~~~v~i~~~~g~~~~L~rY~~~~~~PrpEsyreD~~~a~~~~~~~~~~~~y~~l~a~aESG-wDfSsRw~~~~~~l~t 319 (554)
T PLN02567 241 SGRHTVTIRDANGVVHVLSRYYAMWDKPRPESSRIDKEVASKFSSSSEKQQLYRDIASAAESG-WDFSSRWMRDGSNLTT 319 (554)
T ss_pred cCCcceeeecCCCCcCCCcccccCCCCCCCccccccHHHHhcCCCchHHHHHHHHHHHHHHcC-CCchhhhccccccccc
Confidence 62 1 1112 33220 01 110
Q ss_pred --H-----HhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCc---ceeeecCCCCCCC--------
Q psy5277 105 --T-----AYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTG---SYYKFDSSQSRHS-------- 166 (314)
Q Consensus 105 --t-----~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~---~~~~~d~~~~~~~-------- 166 (314)
| +-.|++.|.+.+.+++||+.+|+++.+++|+++|++.+++|++.|||+ .||+||.......
T Consensus 320 i~t~~i~pVDLNa~L~~~e~~LA~la~~lG~~~~a~~~~~~A~~~~~aI~~~lWdee~G~y~Dydl~~~~~~~~~~~~~~ 399 (554)
T PLN02567 320 LRTTSILPVDLNAFLLKMELDIAFFAKLLGDKATAERFLKAAKARKRAINAVLWNEEMGQWLDYWLPPNGATCQESYTWD 399 (554)
T ss_pred cccccccCccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhcCcccCeEEeecccccccccccccccc
Confidence 0 667999999999999999999999999999999999999999999984 4677875432100
Q ss_pred -CccccccccchhhhhhcCCCCCCCCCh--HHHHHHHHHHHhh-ccCCcCCCccccccCCCCCCCCCCCCC-CCCCCCcc
Q psy5277 167 -DSIMADQLCGYLFLKASGVNTEAIFPS--ANIARALATIFST-NVRGFEAGSMGAVNGMKPNGDRDRSAI-QSEEVWTG 241 (314)
Q Consensus 167 -~~~~~~ql~gq~~~~~lgl~~~~il~~--e~~~~~l~~v~~~-~~~~~~gG~~G~~~~~~p~g~~~~~~~-~~g~vW~~ 241 (314)
..-+...-.+.++++.+|+ +++ +++.++++.+.+. +..+ .|.+..+...| .+ ..-++|+-
T Consensus 400 ~~~~~~~~~~s~f~PLw~g~-----~~~~~~~a~~v~~~l~~~~l~~p-----gGiptsl~~sg-----~qWdgPn~W~p 464 (554)
T PLN02567 400 AENQNTNVYASNFVPLWCGV-----VPPGDAKVEKVVESLKSSGLVLP-----AGIATSLRNTG-----QQWDFPNAWAP 464 (554)
T ss_pred ccccccCccHHHHHHHHcCC-----CChhhHHHHHHHHHHHhccCccC-----CcccCCCCCcc-----ccCCCCCcCHh
Confidence 0001122234567787765 443 4678888887642 2211 13321111111 11 11269999
Q ss_pred HHHHHHHHHHHCCChH---HHHHHHHHHHHHHH---HHhCCCCCCCccccCC
Q psy5277 242 VTYLLSAAMLYEGNVD---EAWTTAGGLYRTVY---ERTGLGFETPEGLTGD 287 (314)
Q Consensus 242 ~~~~lA~~~~~~G~~~---~A~~l~~~~~~~~~---~~~g~~~~~PE~~~~~ 287 (314)
+++++..++.++|..+ .|.+|++..++... .+.| .+-|-|+..
T Consensus 465 l~~l~i~GL~~yG~~ea~~lA~~la~rwl~~~~~~~~~tg---~m~EkYd~~ 513 (554)
T PLN02567 465 LQHMIVEGLAASGSKEGKALAEDIARRWLRSNYVAYKKTG---AMHEKYDAR 513 (554)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHhcC---ceEEeECCC
Confidence 9999999999999875 77777665555432 3345 367888765
No 15
>PRK13272 treA trehalase; Provisional
Probab=99.56 E-value=1.6e-12 Score=128.08 Aligned_cols=250 Identities=13% Similarity=0.090 Sum_probs=174.4
Q ss_pred hHHHHHHhhhhccccc-ccCC-CCCCcccCCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q psy5277 8 GEVKFRSAANTHERYY-TRWF-PEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKC 85 (314)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~~g~-p~~~p~~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~ 85 (314)
+.+.+++|++-|.--+ +.|. ||. ..-.|.+ -.-+|+|..+|..|++.|||..+ ++..|.+++=.+|-
T Consensus 178 ~~~~a~~mi~Nf~~~i~~yGfIPNG----~R~YYl~------RSQPP~l~~Mv~~~~~~t~d~~~-~~~lp~l~kEy~~W 246 (542)
T PRK13272 178 QTTLSRQMLDNFAYLIDTYGHIPNG----NRTYYLS------RSQPPFFSYMVELQAGVEGDAAY-QRYLPQLQKEYAYW 246 (542)
T ss_pred cHHHHHHHHHHHHHHHHHcCcCcCC----chhcccc------CCCchhHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHH
Confidence 4688999999887777 5588 983 2234555 66778899999999999999987 68999999988887
Q ss_pred HhhC---------------CCCCcccc---------------------------------------cCCCCchH------
Q psy5277 86 ESFD---------------KQGLGIVQ---------------------------------------NGGFPDQT------ 105 (314)
Q Consensus 86 ~~~d---------------~d~dGL~~---------------------------------------~~g~~d~t------ 105 (314)
++.. .++.+|-. .+| .|.+
T Consensus 247 m~~~~~~~~~~~~~~~v~~~~g~~L~rY~~~~~~PRpEsy~eD~~~a~~~~~~~~~~~Y~~l~a~aESG-WDfSsRw~~~ 325 (542)
T PRK13272 247 MQGSDDLQPGQAARHVVRLADGSLLNRYWDERDTPRPEAWLHDTRTAAEAKDRPAAEVYRDLRAGAESG-WDYSSRWLAD 325 (542)
T ss_pred cCCCCCCCCccccceeEecCCCcchhhhcCCCCCCCChHHHHHHHHhcCcccCcHHHHHHHHHHHHhcC-CCchhhhccc
Confidence 7531 12222211 001 1110
Q ss_pred --------------HhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCc--ceeeecCCCCCCCCcc
Q psy5277 106 --------------AYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTG--SYYKFDSSQSRHSDSI 169 (314)
Q Consensus 106 --------------~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~--~~~~~d~~~~~~~~~~ 169 (314)
+-.|++.|.+.+.++++++.+|+++.+++|+++|++.+++|++.|||+ -|++||.......+..
T Consensus 326 ~~~L~~i~t~~IvpVDLNalL~~~e~~LA~~~~~lG~~~~a~~~~~~A~~r~~aI~~~lWde~G~~~DYD~~~~~~~~~~ 405 (542)
T PRK13272 326 GKTLASIRTTAIVPVDLNSLLYHLERTLAQACASSGLAACSQDYAALAQQRKQAIDAHLWNPAGYYADYDWQTRTLSEQV 405 (542)
T ss_pred cccccccCcccccCccHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccCcCceEEeeccCCCCccccc
Confidence 678999999999999999999999889999999999999999999984 4677876543222222
Q ss_pred ccccccchhhhhhcCCCCCCCCChHHHHHHHHHHHhhccCCcCCCccccccCCCCCCCCCCCCCCCCCCCccHHHHHHHH
Q psy5277 170 MADQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAA 249 (314)
Q Consensus 170 ~~~ql~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~~~~~~~gG~~G~~~~~~p~g~~~~~~~~~g~vW~~~~~~lA~~ 249 (314)
..+.++++.+ |+.++++++++++.+......+ .|.+.....+|.- -..-++|+-+++++..+
T Consensus 406 ----s~a~f~PLwa-----g~a~~~~a~~l~~~l~~~~l~~-----gGlpTt~~~sgqQ----WD~PN~WaPlq~i~i~G 467 (542)
T PRK13272 406 ----TAAALYPLFA-----GLASDDRAKRTADSVRAQLLRP-----GGLATTALKTGQQ----WDEPNGWAPLQWVAVDG 467 (542)
T ss_pred ----cHHHHHHHHc-----CCCCHHHHHHHHHHHHHhccCC-----CCcCCCCCCcccc----CCCCCccHhHHHHHHHH
Confidence 2335667776 5578899998888886533322 1332222111100 01115899999999999
Q ss_pred HHHCCChHHHHHHHHHHHHHHHHHhCCCCCCCccccCC
Q psy5277 250 MLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGD 287 (314)
Q Consensus 250 ~~~~G~~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~ 287 (314)
+.++|..+.|.+|.+..++....-+.-.+.+-|-|+-.
T Consensus 468 L~~yG~~~lA~~La~rwl~~~~~~~~~~g~m~EKYdv~ 505 (542)
T PRK13272 468 LRRYGEDALARTIGERFLAQVQALFAREHKLVEKYGLD 505 (542)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHhhcCceeEEeecC
Confidence 99999999999999998887732222223367888754
No 16
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=99.55 E-value=8.6e-13 Score=133.21 Aligned_cols=218 Identities=15% Similarity=0.068 Sum_probs=148.2
Q ss_pred ccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhh-CCCCCcccccCCCCchHHhHHHHHHHHHHHHHHHHHHcC
Q psy5277 49 DLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESF-DKQGLGIVQNGGFPDQTAYCGGLHIAALACMVEMSSLLN 127 (314)
Q Consensus 49 D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~-d~d~dGL~~~~g~~d~t~~~~al~y~AL~~~a~lA~~lG 127 (314)
|-.-..|++++.+++. +. ..+|+.|+++++|+.++ .....|+=|..+ ... .++.+-.++||.++++||+.+|
T Consensus 351 D~~g~~i~~~~~l~~~--~~---~~~~~~vk~aadfl~~~~p~p~~d~WEer~-g~~-~~T~a~v~aaL~~Aa~iA~~~g 423 (648)
T TIGR01535 351 DETAFPILLAYRLHRY--DH---AFYDKMLKPAADFIVKNGPKTGQERWEEIG-GYS-PSTLAAEIAGLTAAADIAEQNG 423 (648)
T ss_pred cHHHHHHHHHHHHHHc--Cc---HHHHHHHHHHHHHHHHcCCCCCCCcccccC-CcC-chhHHHHHHHHHHHHHHHHHcC
Confidence 3334478888877764 22 45789999999999983 233446655543 223 5777766799999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhCcCcc-------eee-ecCCCC----------------CCCCccccccccchhhhhhc
Q psy5277 128 DTQQQQQFSAKLTKASQVYHDLLWTGS-------YYK-FDSSQS----------------RHSDSIMADQLCGYLFLKAS 183 (314)
Q Consensus 128 ~~~~a~~~~~~a~~~k~~~~~~lW~~~-------~~~-~d~~~~----------------~~~~~~~~~ql~gq~~~~~l 183 (314)
+++.+++|++.|+++++.+.+++|+.+ +|. ....+. ..+..+.++.|. .+.+
T Consensus 424 ~~~~a~~w~~~Ad~i~~~i~~~~~~~~g~~~~~~~f~r~~~~~~~~~~~~~~~~n~~~~~~~~~~vDaSlL~----L~~~ 499 (648)
T TIGR01535 424 DAGSAQKYRETADNWQKLIENWTFTTNGPLGDGQYYLRIAGLGDPNADFLINIANGGGVYPEKEVLDPGFLE----LVRL 499 (648)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCcCCCcccCCCCeEEEeecCCCCccccccccccccccCCCCCccCHHHHH----HHHc
Confidence 998899999999999999999999854 554 311110 123444444332 2334
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhccCC-c-CCCccccccCCC---CCCCCCCCCCCCCCCCccHHHHHHHHHHHCCChHH
Q psy5277 184 GVNTEAIFPSANIARALATIFSTNVRG-F-EAGSMGAVNGMK---PNGDRDRSAIQSEEVWTGVTYLLSAAMLYEGNVDE 258 (314)
Q Consensus 184 gl~~~~il~~e~~~~~l~~v~~~~~~~-~-~gG~~G~~~~~~---p~g~~~~~~~~~g~vW~~~~~~lA~~~~~~G~~~~ 258 (314)
|+ -..+++++.+.++.|.+.+... . .++.+.+.+... .+|.+- ..-..|++||.+|.+++...+..|. +
T Consensus 500 G~---~~~dDPri~~Tl~aIe~~L~~~~~~~g~~~RY~~Dgyg~~~~~~~~-~~~~~G~~Wpi~T~~~~~y~l~~~~--~ 573 (648)
T TIGR01535 500 GV---KSPDDPHILATLKEIDSTIKVDTPKGPSWYRYTHDGYGEPAKTEAY-DGTGKGRLWPLLTGERGHYELAAGK--D 573 (648)
T ss_pred CC---cCCCCHHHHHHHHHHHHHhccCCCCCCeEEecCCCCCCCcCCCCCc-cCCcCCceeehhhhHHHHHHHHcCC--h
Confidence 43 1346889999999998866432 1 123343432211 112111 2335689999999999999998888 6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCccccCC
Q psy5277 259 AWTTAGGLYRTVYERTGLGFETPEGLTGD 287 (314)
Q Consensus 259 A~~l~~~~~~~~~~~~g~~~~~PE~~~~~ 287 (314)
|.++++++.... ...|+ +|||+...
T Consensus 574 a~~~l~~~~~~a-~~~g~---lpEQV~d~ 598 (648)
T TIGR01535 574 ATPYLKAMEKFA-NEGGM---IPEQVWDQ 598 (648)
T ss_pred HHHHHHHHHHhc-CcCCC---cCcccCCC
Confidence 889999999888 65665 99999555
No 17
>PRK13270 treF trehalase; Provisional
Probab=99.51 E-value=4.4e-12 Score=125.21 Aligned_cols=248 Identities=12% Similarity=0.055 Sum_probs=170.6
Q ss_pred hHHHHHHhhhhccccc-ccCC-CCCCcccCCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q psy5277 8 GEVKFRSAANTHERYY-TRWF-PEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKC 85 (314)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~~g~-p~~~p~~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~ 85 (314)
+.+.+++|++-|.--+ +.|. ||. ..-.|.. -.-+|+|..+|..|++ .|.+++++..|.+++=.+|-
T Consensus 189 ~~~~a~~mi~Nf~~li~~yGfIPNG----~R~YYl~------RSQPP~l~~Mv~~y~~--~~~~~~~~~lp~l~~E~~fW 256 (549)
T PRK13270 189 REDLLKCMADNFAWMIENYGHIPNG----NRTYYLS------RSQPPVFALMVELFEE--DGVRGARRYLDHLKMEYAFW 256 (549)
T ss_pred cHHHHHHHHHHHHHHHHHcCcCcCC----chhcccc------CCCCHhHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHH
Confidence 4578899999887777 5588 983 2234555 5667888888877665 57899999999999999988
Q ss_pred HhhCC---------------CCCccccc--------------------------------------CCCCch--------
Q psy5277 86 ESFDK---------------QGLGIVQN--------------------------------------GGFPDQ-------- 104 (314)
Q Consensus 86 ~~~d~---------------d~dGL~~~--------------------------------------~g~~d~-------- 104 (314)
++... ++.+|-.. +| .|.
T Consensus 257 m~~~~~~~~~~~~~~~v~~~~g~~L~rY~~~~~~PRpEsyreD~~~a~~~~rp~~~~Y~~lra~aESG-WDfSsRW~~~~ 335 (549)
T PRK13270 257 MDGAESLIPNQAYRHVVRMPDGSLLNRYWDDRDTPRDESWLEDVETAKHSGRPPNEVYRDLRAGAASG-WDYSSRWLRDT 335 (549)
T ss_pred cCCCCccCcccccceeEecCCCCccccccCCCCCCCCchhHHHHHhhcccCCchHHHHHHHHHHHHcC-CCchhhcccCC
Confidence 76211 23333220 01 000
Q ss_pred -------H-----HhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCc---ceeeecCCCCCCCCcc
Q psy5277 105 -------T-----AYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTG---SYYKFDSSQSRHSDSI 169 (314)
Q Consensus 105 -------t-----~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~---~~~~~d~~~~~~~~~~ 169 (314)
| +-.|++.|.+.+.++++++.+|+++.+++|+++|++.+++|++.|||+ .||+||...... ..
T Consensus 336 ~~L~~i~T~~iipVDLNaiL~~~e~~LA~~a~~lG~~~~a~~~~~~A~~r~~AI~~~LWnee~G~~~DYD~~~~~~-~~- 413 (549)
T PRK13270 336 GRLASIRTTQFIPIDLNAFLYKLESAIANISALKGEKETEALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQL-AL- 413 (549)
T ss_pred cccccccccCcchhhHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccCcccCeEEecccccCcc-cc-
Confidence 0 667999999999999999999999889999999999999999999984 467787654322 12
Q ss_pred ccccccchhhhhhcCCCCCCCCChHHHHHHHHHHHhhccCCcCCCccccccCCCCCCCCCCCCCCCCCCCccHHHHHHHH
Q psy5277 170 MADQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAA 249 (314)
Q Consensus 170 ~~~ql~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~~~~~~~gG~~G~~~~~~p~g~~~~~~~~~g~vW~~~~~~lA~~ 249 (314)
.-.+.++++.+ |+.+++++.++++.+......+ | |.+.....+|. --..-++|+-+++++..+
T Consensus 414 ---~s~a~f~PLwa-----G~a~~~qa~~l~~~l~~~ll~p--G---Gl~tS~~~sgq----QWD~PN~WaPlqwmiieG 476 (549)
T PRK13270 414 ---FSAAAIVPLYV-----GMANHEQADRLANAVRSRLLTP--G---GILASEYETGE----QWDKPNGWAPLQWMAIQG 476 (549)
T ss_pred ---ccHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcccC--C---CcCCCCCCCcc----cCCCCCCCccHHHHHHHH
Confidence 23345667776 4578888888888876433221 1 22111111010 001115899999999999
Q ss_pred HHHCCChHHHHHHHHHHHHHHHHHhCCCCCCCccccCC
Q psy5277 250 MLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGD 287 (314)
Q Consensus 250 ~~~~G~~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~ 287 (314)
+.++|..+.|.+|++..++....-+.-.+.+.|-|+..
T Consensus 477 L~ryG~~~lA~~LA~rwl~~~~~~~~~~g~m~EKYdv~ 514 (549)
T PRK13270 477 FKMYGDDLLGDEIARSWLKTVNQFYQEHHKLIEKYHIA 514 (549)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHhhcCeeEEEecCC
Confidence 99999999999999988877632222123367888664
No 18
>PLN03005 beta-fructofuranosidase
Probab=99.51 E-value=2.6e-12 Score=123.00 Aligned_cols=245 Identities=14% Similarity=0.142 Sum_probs=153.1
Q ss_pred cccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh----hCCCCCcccccCC---CCc-------hHHhHHHHHH
Q psy5277 48 KDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCES----FDKQGLGIVQNGG---FPD-------QTAYCGGLHI 113 (314)
Q Consensus 48 ~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~----~d~d~dGL~~~~g---~~d-------~t~~~~al~y 113 (314)
+|..+|||++++.|.+.|||.+|.++ |.++++|.++++ ...|...++.... ..| -+.|+|+|||
T Consensus 203 VDS~LWWIIllraY~k~tgD~s~~e~--pevQrgi~lil~lcLa~~Fd~~ptLlvpDgs~miDRrMgv~G~pLeiQaLfy 280 (550)
T PLN03005 203 VDSGFWWIILLRAYTKSTGDLTLSET--PECQKGMKLILSLCLAEGFDTFPTLLCADGCSMIDRRMGVYGYPIEIQALFF 280 (550)
T ss_pred cchhhHHHHHHHHHHhhccchhhhhC--hHHHHHHHHHHHHhcccccCCCceEeccCCccccccccccCCccHHHHHHHH
Confidence 55555599999999999999999998 999999999955 3344455555321 112 1289999999
Q ss_pred HHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhCc-C----cceeeecCC--------C-----------------
Q psy5277 114 AALACMVEMSSLLND-TQQQQQFSAKLTKASQVYHDLLW-T----GSYYKFDSS--------Q----------------- 162 (314)
Q Consensus 114 ~AL~~~a~lA~~lG~-~~~a~~~~~~a~~~k~~~~~~lW-~----~~~~~~d~~--------~----------------- 162 (314)
.||+++.+|-+.-++ .+......++...++.-+.+.+| | +.-|+|-.+ +
T Consensus 281 ~ALR~~~~~L~~~~~~~~~i~~i~~rl~~L~~h~r~yyWld~~~ln~iyr~kteey~~~a~NkfNi~pd~ip~wl~dwlp 360 (550)
T PLN03005 281 MALRSALSMLKPDGDGREFIERIVKRLHALSFHMRNYFWLDHQNLNDIYRFKTEEYSHTAVNKFNVMPDSIPEWVFDFMP 360 (550)
T ss_pred HHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHheecchhhhhhhhhccHhhhchhhhhccccCCccchhhhhhhcc
Confidence 999999885433221 22334444444555566777777 2 111221000 0
Q ss_pred --CC-CCCccccc------cccchhhhhhcCCCCCCCCChHHHHHHHHHHHhh---ccC--CcCCCccccccCC---C--
Q psy5277 163 --SR-HSDSIMAD------QLCGYLFLKASGVNTEAIFPSANIARALATIFST---NVR--GFEAGSMGAVNGM---K-- 223 (314)
Q Consensus 163 --~~-~~~~~~~~------ql~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~---~~~--~~~gG~~G~~~~~---~-- 223 (314)
+. --..+.+. ..+|..++.++ ++.++++++++++.|++. ++. +. ..+.+... +
T Consensus 361 ~~gGY~igNv~pa~~dfRffslGNllAILs-----~Lat~~Qs~aIm~lIe~~w~~Lv~~MPl---kIcyPa~e~~eWri 432 (550)
T PLN03005 361 LRGGYFVGNVGPAHMDFRWFALGNCVSILS-----SLATPDQSMAIMDLLEHRWEELVGEMPL---KICYPCLEGHEWRI 432 (550)
T ss_pred cCCceeeeecccccCCceehhhhhHHHHHh-----ccCCHHHHHHHHHHHHHHHHHHhccCCc---ceeecccCCcccee
Confidence 00 00011111 23445555555 557999999999999731 111 11 11111100 0
Q ss_pred -CCCCCCC-C-CCCCCCCCccHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhCCCCCCCccccCC-CCCCCCCchhhh
Q psy5277 224 -PNGDRDR-S-AIQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGD-KTYRSGGYMRAL 299 (314)
Q Consensus 224 -p~g~~~~-~-~~~~g~vW~~~~~~lA~~~~~~G~~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~-g~~~~~~Y~r~~ 299 (314)
....+.+ | +||+|-.||-+.+.+.+.+++.|..+.|.+.++.+.+.. .+-+ -||-|+|- |++= ..=.|+-
T Consensus 433 ~tG~dpKN~PWSYHNGGsWP~Llw~~~aA~iK~gr~~lA~ral~~ae~rl-~~d~----WpEyydGktGr~i-Gkqar~~ 506 (550)
T PLN03005 433 VTGCDPKNTRWSYHNGGSWPVLLWQLTAACIKTGRPQIARRAVDLIESRL-HRDC----WPEYYDGKLGRYV-GKQARKY 506 (550)
T ss_pred cccCCCCCCCccccCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hhcC----chhhcCCCCCccc-ceecccc
Confidence 1123444 2 789999999999999999999999999988877766665 4444 39999988 6642 2336789
Q ss_pred HHHHHHHHH
Q psy5277 300 AVYAMQDAY 308 (314)
Q Consensus 300 ~~w~~~~al 308 (314)
|.|++.-.|
T Consensus 507 QTWSiAG~L 515 (550)
T PLN03005 507 QTWSIAGYL 515 (550)
T ss_pred CchHHHHHH
Confidence 999987643
No 19
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.8e-12 Score=130.51 Aligned_cols=233 Identities=13% Similarity=0.098 Sum_probs=164.4
Q ss_pred CcccccChhHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHhhC-------CCCCcccccCCCCchHHhHHHHHHHHH
Q psy5277 45 SDWKDLNLKFIVSIYRDYALHKDIRFLTRV-YPTCLELIRKCESFD-------KQGLGIVQNGGFPDQTAYCGGLHIAAL 116 (314)
Q Consensus 45 ~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~-~p~vk~al~~~~~~d-------~d~dGL~~~~g~~d~t~~~~al~y~AL 116 (314)
..+.|.+.+-.+++..|+...+|..+.... ...++.+.+++.+.+ ....++-+..+ . ..+++.+..|+||
T Consensus 349 pv~~~~~a~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~WEer~-g-~~~yt~~~~~agL 426 (612)
T COG3387 349 PVRIGNTALVQGALDVYGSIMNDIYFYAKYYAIYILPAADYLRRMEKIKANLPTPDFDLWEERG-G-HFTYTKATVYAGL 426 (612)
T ss_pred ceEEcchhhHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhcCCCCCccceecccC-C-cccchHHHHHHHH
Confidence 356666777899999999999998877665 455666666665411 12234444332 2 2378999999999
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCcc--eee--ecCCCCCCCCccccccccchhhhhhcCCCCCCC--
Q psy5277 117 ACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTGS--YYK--FDSSQSRHSDSIMADQLCGYLFLKASGVNTEAI-- 190 (314)
Q Consensus 117 ~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~~--~~~--~d~~~~~~~~~~~~~ql~gq~~~~~lgl~~~~i-- 190 (314)
.+++.||+..|++..++.|++.++++|+.+.+++++.+ +|. +.. ..++.+.++-+. |+.||+
T Consensus 427 d~A~~lA~~~gd~~~a~~~~~~ad~ik~~v~~~~~~~~~~~f~r~~~~---~~~~~vDasll~---------l~~fg~i~ 494 (612)
T COG3387 427 DAAADLAEEFGDKGSAEHWRKTADELKEAVLRRGYAEDGGYFVRSLGR---KPDDTVDASLLG---------LVLFGFIP 494 (612)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhcccccCCeeehhcCC---CccccccHHHhh---------ccccCccC
Confidence 99999999999999999999999999999999999744 444 221 124455543222 221244
Q ss_pred CChHHHHHHHHHHHhhccCCcCCCccccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q psy5277 191 FPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTV 270 (314)
Q Consensus 191 l~~e~~~~~l~~v~~~~~~~~~gG~~G~~~~~~p~g~~~~~~~~~g~vW~~~~~~lA~~~~~~G~~~~A~~l~~~~~~~~ 270 (314)
.+++++..++++|.+.+..+ .+|..++.+ ...+ .....+.+|+.++.|++..++..|+.++|.++++++..+.
T Consensus 495 ~~D~~~~~t~~~I~~~L~~~-~~gi~RY~~-~~~d-----~~~~~~~~w~i~t~Wl~~~~~~~g~~~~a~~ll~~l~~~a 567 (612)
T COG3387 495 PDDPRILATVEAIERELLVD-GGGIRRYNN-EYDD-----GLGGDNGPWIITTLWLSEYYLALGRLDEAKKLLEWLLAFA 567 (612)
T ss_pred CCCHHHHHHHHHHHHHHhhc-CCcEEcCcc-cccc-----ccCCCCCcceeehhHHHHHHHHccchHHHHHHHHHHHHhc
Confidence 45789999999999877543 112333322 1111 1223346999999999999999999999999999999988
Q ss_pred HHHhCCCCCCCccccCC-CCCCCCCchhhhHHHHHHH
Q psy5277 271 YERTGLGFETPEGLTGD-KTYRSGGYMRALAVYAMQD 306 (314)
Q Consensus 271 ~~~~g~~~~~PE~~~~~-g~~~~~~Y~r~~~~w~~~~ 306 (314)
...|+ +||+++.. |+|-+. .+++||=..
T Consensus 568 -~~~gl---l~EQv~~~~G~~~g~----~PlawSha~ 596 (612)
T COG3387 568 -SPLGL---LPEQVDDGSGEPLGA----FPLAWSHAE 596 (612)
T ss_pred -CCCCC---cchhhcCCCCccCCC----CcchhhhHH
Confidence 76776 99999877 676554 778887443
No 20
>PLN02973 beta-fructofuranosidase
Probab=99.47 E-value=1.1e-11 Score=118.88 Aligned_cols=246 Identities=15% Similarity=0.140 Sum_probs=154.4
Q ss_pred cccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh----hCCCCCcccccCCCCc----------hHHhHHHHHH
Q psy5277 48 KDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCES----FDKQGLGIVQNGGFPD----------QTAYCGGLHI 113 (314)
Q Consensus 48 ~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~----~d~d~dGL~~~~g~~d----------~t~~~~al~y 113 (314)
+|..+|||++++.|.+.|||.+|.+ .|.++++|.++.. ...|...++......+ -+.|+|+|||
T Consensus 224 VDS~LWWIIllraY~k~TgD~s~~e--~pevQrgi~lil~lcL~~~Fd~~ptLlVpDgs~miDrrMgv~G~pLeiQaLfy 301 (571)
T PLN02973 224 VDSGFWWIILLRAYTKSTGDSSLAD--MPECQKGIRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFF 301 (571)
T ss_pred cchhhHHHHHHHHHHHhccchhhhh--cHHHHHHHHHHHHHhcccccCCCceEeccCCccccccccccCCccHHHHHHHH
Confidence 4555559999999999999999999 8999999999988 4445555555321111 1289999999
Q ss_pred HHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhCcCc-----ceeeecCC--------------------------
Q psy5277 114 AALACMVEMSSLLND-TQQQQQFSAKLTKASQVYHDLLWTG-----SYYKFDSS-------------------------- 161 (314)
Q Consensus 114 ~AL~~~a~lA~~lG~-~~~a~~~~~~a~~~k~~~~~~lW~~-----~~~~~d~~-------------------------- 161 (314)
.||+++.+|-+.-.+ .+...+...+...++..+.+++|.. .-|+|-.+
T Consensus 302 ~ALR~a~~~L~~~~~~~~~i~~i~~rl~~L~~hir~~ywld~~~ln~iyRykteey~~~a~NkfNi~p~sip~wl~dwlp 381 (571)
T PLN02973 302 MALRCALLLLKHDGEGKEMVEQIVKRLHALSYHMRSYFWLDLKQLNDIYRYKTEEYSHTAVNKFNVIPDSLPEWVFDFMP 381 (571)
T ss_pred HHHHHHHHhcCccchhHHHHHHHHhhHHHHHHHHHHHHhcCHHHhhhHhhcchhhcchhhhhhccCCccccchhhhhhcc
Confidence 999999875433221 2233444455556777788888841 11221000
Q ss_pred -CCC-CCCccccc------cccchhhhhhcCCCCCCCCChHHHHHHHHHHHhhccCCcCCCccccccCCCC---------
Q psy5277 162 -QSR-HSDSIMAD------QLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKP--------- 224 (314)
Q Consensus 162 -~~~-~~~~~~~~------ql~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~~~~~~~gG~~G~~~~~~p--------- 224 (314)
++. --..+.+. ..+|..++.++ ++.++++++++++.|+... .... |.+-.....+|
T Consensus 382 ~~gGY~igNv~Pa~~DfRffslGNllAILs-----~Lat~~Qs~aIm~lIe~~w-~~Lv-g~MPlkicyPaie~~EWri~ 454 (571)
T PLN02973 382 PHGGFFIGNVSPARMDFRWFALGNCIAILS-----SLATPEQSTAIMDLIESRW-EELV-GEMPLKVCYPAIESHEWRIV 454 (571)
T ss_pred CCCceeeeecccccCCcchhhhhhHHHHHh-----ccCCHHHHHHHHHHHHHHH-HHHH-hcCCcceeccCcCCccceeh
Confidence 000 00011111 23444555555 5579999999999996611 0000 01111111111
Q ss_pred -CCCCCC-C-CCCCCCCCccHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhCCCCCCCccccCC-CCCCCCCchhhhH
Q psy5277 225 -NGDRDR-S-AIQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGD-KTYRSGGYMRALA 300 (314)
Q Consensus 225 -~g~~~~-~-~~~~g~vW~~~~~~lA~~~~~~G~~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~-g~~~~~~Y~r~~~ 300 (314)
...+.+ | +||+|-.||-+.+.+.+.+++.|..+.|.+.++.+.+.. .+-+ -||-|+|- |++=+- =.|--|
T Consensus 455 tG~dpKN~PWSYHNGGsWP~Llw~~~aA~iK~gr~~lA~ral~~ae~rl-~~d~----WpEyyDGktGr~iGk-qar~yQ 528 (571)
T PLN02973 455 TGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRAIEVAEARL-HKDH----WPEYYDGKVGRYVGK-QSRKNQ 528 (571)
T ss_pred hccCCCCCccceecCCCccHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hhcC----ChhhcCCCCCcCcce-eccccC
Confidence 123444 2 789999999999999999999999999988877766665 4444 39999988 664331 234489
Q ss_pred HHHHHHHH
Q psy5277 301 VYAMQDAY 308 (314)
Q Consensus 301 ~w~~~~al 308 (314)
.|++.--|
T Consensus 529 TWSiAG~L 536 (571)
T PLN02973 529 TWSVAGYL 536 (571)
T ss_pred chHHHHHH
Confidence 99987543
No 21
>PLN02703 beta-fructofuranosidase
Probab=99.46 E-value=6.8e-12 Score=121.04 Aligned_cols=248 Identities=14% Similarity=0.128 Sum_probs=154.5
Q ss_pred ccccChhHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHHHHHhhCCCCCcccccCCC---Cch-------HHhHHHHHHH
Q psy5277 47 WKDLNLKFIVSIYRDYALHKDIRFLTRVY--PTCLELIRKCESFDKQGLGIVQNGGF---PDQ-------TAYCGGLHIA 114 (314)
Q Consensus 47 w~D~~~~fi~~~~~y~~~TgD~~fl~~~~--p~vk~al~~~~~~d~d~dGL~~~~g~---~d~-------t~~~~al~y~ 114 (314)
.+|..+|||++++.|.+.|||.+|.++.- +.++++++++.....|...++..... .|. +.|+|+|||.
T Consensus 255 pVDS~LWWIIllraY~k~TgD~sf~e~~~~Q~gI~liL~LcLa~~Fd~fPtLlVpDgs~miDRrMgv~G~PLEiQaLfy~ 334 (618)
T PLN02703 255 PVDSGLWWIILLRAYGKCTGDLSVQERVDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYS 334 (618)
T ss_pred cccchhHHHHHHHHHHHhhccHHHhhhhhHHHHHHHHHHHHccCcCCCCceEeccCCCchhccccCcCCccHHHHHHHHH
Confidence 35666669999999999999999999987 99999999998865666666653211 111 2899999999
Q ss_pred HHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhCcCc-----ceee-------------e----cCCC---------
Q psy5277 115 ALACMVEMSSLLND-TQQQQQFSAKLTKASQVYHDLLWTG-----SYYK-------------F----DSSQ--------- 162 (314)
Q Consensus 115 AL~~~a~lA~~lG~-~~~a~~~~~~a~~~k~~~~~~lW~~-----~~~~-------------~----d~~~--------- 162 (314)
||+++.+|-..-++ .+.......+...++.-+.+++|.. .-|+ | |...
T Consensus 335 ALR~a~~~L~~~~~~~e~i~~i~~rl~~L~~hir~~yWld~~~ln~iyRykteey~~~A~NkfNi~p~siP~WL~dwlp~ 414 (618)
T PLN02703 335 ALVCAREMLTPEDGSVDLIRALNNRLVALNFHIREYYWLDLKKINEIYRYQTEEYSYDAVNKFNIYPDQIPSWLVDFMPN 414 (618)
T ss_pred HHHHHHHhcCccchHHHHHHHHhhhhhhhHHHHHHHHhhcHHHhhHHHhhhhhhcchhhhhhcccCCCCcchHhhhhccc
Confidence 99999875432221 1122333333334555566777731 1111 1 1000
Q ss_pred -CC-CCCccccc------cccchhhhhhcCCCCCCCCChHHHHHHHHHHHhh---ccC--CcCCCccccccCCC------
Q psy5277 163 -SR-HSDSIMAD------QLCGYLFLKASGVNTEAIFPSANIARALATIFST---NVR--GFEAGSMGAVNGMK------ 223 (314)
Q Consensus 163 -~~-~~~~~~~~------ql~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~---~~~--~~~gG~~G~~~~~~------ 223 (314)
+. --..+.+. ..+|..++.++ ++.++++++++|+.|+.. ++. +. ....+...-
T Consensus 415 ~gGYligNv~Pa~mDfRffsLGNlLAILs-----~Lat~~Qs~aIm~lIe~~w~~Lvg~MPl---kIcyPaie~~EWRi~ 486 (618)
T PLN02703 415 RGGYLIGNLQPAHMDFRFFTLGNLWSIVS-----SLATNDQSHAILDLIEAKWAELVADMPL---KICYPAMEGEEWRII 486 (618)
T ss_pred cCceeeeeecccccccchhhhhhHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhccCcc---ccccCCcCCccceee
Confidence 00 00011221 23455555555 557999999999998662 111 10 111111100
Q ss_pred CCCCCCC-C-CCCCCCCCccHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhCCCCCCCccccCC-CCCCCCCchhhhH
Q psy5277 224 PNGDRDR-S-AIQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGD-KTYRSGGYMRALA 300 (314)
Q Consensus 224 p~g~~~~-~-~~~~g~vW~~~~~~lA~~~~~~G~~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~-g~~~~~~Y~r~~~ 300 (314)
....+.+ | +||+|-.||-+.+.+.+.+++.|..+.|.+.++.+.+.. .+.+ -||-|+|- |+|=+- =.|--|
T Consensus 487 TG~DpKN~PWSYHNGGsWP~LlWf~~aA~iK~Gr~~lA~ral~~ae~rl-~~d~----WpEYyDGktGr~iGk-qar~yQ 560 (618)
T PLN02703 487 TGSDPKNTPWSYHNGGAWPTLLWQLTVASIKMGRPEIAEKAVELAERRI-SLDK----WPEYYDTKRARFIGK-QARLYQ 560 (618)
T ss_pred eCcCCCCCCccccCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hhcc----ChhhccCCCCcCcce-eccccC
Confidence 0123433 2 789999999999999999999999999988877766665 4444 39999988 664331 234589
Q ss_pred HHHHHHHH
Q psy5277 301 VYAMQDAY 308 (314)
Q Consensus 301 ~w~~~~al 308 (314)
.|++.--|
T Consensus 561 TWSiAGyL 568 (618)
T PLN02703 561 TWSIAGYL 568 (618)
T ss_pred chHHHHHH
Confidence 99987543
No 22
>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases. This is a unique enzyme that hydrolyses core 1-type O-glycan from glycoproteins. The proteins are produced in the gut-flora bacteria from Actinobacteria and Firmicutes [].; GO: 0033926 glycopeptide alpha-N-acetylgalactosaminidase activity
Probab=99.37 E-value=4.2e-11 Score=112.59 Aligned_cols=251 Identities=15% Similarity=0.155 Sum_probs=156.8
Q ss_pred ccccCCcccccChhHHHHHHHHHHHhCCHHHHHH--HHHHHHHHHHHHHh--hCCCCCcccccCC------CC---chHH
Q psy5277 40 NVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTR--VYPTCLELIRKCES--FDKQGLGIVQNGG------FP---DQTA 106 (314)
Q Consensus 40 ~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~--~~p~vk~al~~~~~--~d~d~dGL~~~~g------~~---d~t~ 106 (314)
-++|.++| ||+.+..|.+.|||.+|.++ +-..+|.+++-++. +|.-++=|+ .+| .+ .-..
T Consensus 113 ~pVDs~~W------WiillraY~k~tgD~s~~~~~~~Q~gi~liL~lcL~~~Fd~~PtLlv-pDg~~MiDRrMgv~G~Pl 185 (436)
T PF12899_consen 113 APVDSGLW------WIILLRAYVKATGDYSLAESPEVQRGIRLILDLCLADGFDMFPTLLV-PDGACMIDRRMGVYGHPL 185 (436)
T ss_pred cCcccccH------HHHHHHHHHHHhcchhhhhcHHHHHHHHHHHHHHcccccCCCceEEe-cCCceeecccccccCCcc
Confidence 34555555 99999999999999999976 56677777777765 332222221 221 01 1127
Q ss_pred hHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHhCcC-----cceeeecCC---------------CC--
Q psy5277 107 YCGGLHIAALACMVEMSSLL-NDTQQQQQFSAKLTKASQVYHDLLWT-----GSYYKFDSS---------------QS-- 163 (314)
Q Consensus 107 ~~~al~y~AL~~~a~lA~~l-G~~~~a~~~~~~a~~~k~~~~~~lW~-----~~~~~~d~~---------------~~-- 163 (314)
++++|+|.||+++.+|.+.- +..+..++-.++...++.-+.+++|- ..-|+|-.+ ..
T Consensus 186 EiQ~Lf~~aLr~a~~ll~~~~~~~~~~~~i~~rl~~L~~h~r~~yWld~~~ln~iyr~~teey~~~a~N~fNi~p~~ip~ 265 (436)
T PF12899_consen 186 EIQALFYMALRCARELLKPDEEGKDLIERIDKRLHALSFHIREYYWLDLKRLNEIYRYKTEEYGHTAVNKFNIYPDSIPD 265 (436)
T ss_pred hHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhccHhhhhhhhhhcccCCcccchH
Confidence 99999999999999986643 22345667778888888889999993 122332100 00
Q ss_pred ------CC-----CCccccc------cccchhhhhhcCCCCCCCCChHHHHHHHHHHHhhc---cCCcCCCccccccCC-
Q psy5277 164 ------RH-----SDSIMAD------QLCGYLFLKASGVNTEAIFPSANIARALATIFSTN---VRGFEAGSMGAVNGM- 222 (314)
Q Consensus 164 ------~~-----~~~~~~~------ql~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~~---~~~~~gG~~G~~~~~- 222 (314)
+. -.++.|. ..+|..++.++ ++.++++++++++-+++.. +.+.=- ....+...
T Consensus 266 wl~dwlp~~gGY~ignv~P~~~dfRff~lGNlLAiLs-----gLat~~qa~~I~~lIe~~~~~L~g~mPl-ki~yPale~ 339 (436)
T PF12899_consen 266 WLFDWLPEKGGYFIGNVSPARMDFRFFSLGNLLAILS-----GLATPEQAEAIMDLIEERWEDLVGPMPL-KICYPALEG 339 (436)
T ss_pred HHHHhcccCCceeEeeccccccceeehhhhhHHHHHh-----cCCCHHHHHHHHHHHHHHHhhhccccch-hhccCCCCC
Confidence 00 0111111 24455555655 5679999999999996642 111100 00111000
Q ss_pred --C---CCCCCCC--CCCCCCCCCccHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhCCCCCCCccccCC-CCCCCCC
Q psy5277 223 --K---PNGDRDR--SAIQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGD-KTYRSGG 294 (314)
Q Consensus 223 --~---p~g~~~~--~~~~~g~vW~~~~~~lA~~~~~~G~~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~-g~~~~~~ 294 (314)
+ ...++.+ -+||+|-.||-+.+.+.+++++.|..+.|.+.+....+.. .+. ..||-|+|- |+|=+.
T Consensus 340 ~eWri~tg~dpKN~PwsYHNGG~WP~LlW~~~aA~ik~gr~~lA~~al~~a~~rL-~~d----ewpEyydGktGrp~Gk- 413 (436)
T PF12899_consen 340 EEWRIYTGCDPKNTPWSYHNGGSWPVLLWFLTAALIKMGRPELAERALEAAENRL-SKD----EWPEYYDGKTGRPMGK- 413 (436)
T ss_pred CCCccccCcCcCccccccccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-ccc----CCcccccCCCCCcccc-
Confidence 0 0123333 2779999999999999999999999998888766644444 333 469999887 554221
Q ss_pred chhhhHHHHHHHHHc
Q psy5277 295 YMRALAVYAMQDAYL 309 (314)
Q Consensus 295 Y~r~~~~w~~~~al~ 309 (314)
=+|.-|+|++.-.|-
T Consensus 414 qar~~QTWSaAgyLl 428 (436)
T PF12899_consen 414 QARKYQTWSAAGYLL 428 (436)
T ss_pred cccccCchHHHHHHH
Confidence 245679999887663
No 23
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=99.02 E-value=6.8e-08 Score=100.32 Aligned_cols=287 Identities=16% Similarity=0.211 Sum_probs=173.7
Q ss_pred cchhhHHHHHHhhhhccccc--ccCCCCCCccc-----C-CCccccccCCcccccChhHHHHHHHHHHH---h-------
Q psy5277 4 VWTMGEVKFRSAANTHERYY--TRWFPEEEPFS-----L-INGYNVFDVSDWKDLNLKFIVSIYRDYAL---H------- 65 (314)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~~g~p~~~p~~-----~-~~~y~~~D~~~w~D~~~~fi~~~~~y~~~---T------- 65 (314)
+.....+.+.+++..|..-| |...|.+--.+ + ++++..+..+- -.+|-+++++.++... .
T Consensus 410 i~~wD~dls~eil~sWl~lm~~dGWIpREQILG~EArskVP~eF~vQ~p~~--ANPPTl~l~l~~ll~~~~~~~~~~~~~ 487 (801)
T PF03200_consen 410 ISRWDPDLSLEILASWLDLMNEDGWIPREQILGEEARSKVPAEFQVQYPSN--ANPPTLFLALEKLLDRLKAEKKSEDNS 487 (801)
T ss_pred HHHhCHHHHHHHHHHHHHhccccCCchhhhhcCHhHHhcCCHHHHcCCCCC--CCCccHHHHHHHHHHHHhhccccccch
Confidence 34445778888888887777 33448765542 2 33566665533 3456677777766442 2
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHh-hCCC-----------CC--c----ccccCCC--------CchH---HhHHHHHHHH
Q psy5277 66 -KDIRFLTRVYPTCLELIRKCES-FDKQ-----------GL--G----IVQNGGF--------PDQT---AYCGGLHIAA 115 (314)
Q Consensus 66 -gD~~fl~~~~p~vk~al~~~~~-~d~d-----------~d--G----L~~~~g~--------~d~t---~~~~al~y~A 115 (314)
.+.+||+++||.+++..+|..+ +..+ .+ . ....+|. ++.+ +-..+..+.+
T Consensus 488 ~~~~~~l~~~yp~L~~~~~wf~~tQ~G~~~~~yrWrGr~~~~~~~lnp~~L~SGlDDYPRa~~p~~~e~hvDl~sWMa~~ 567 (801)
T PF03200_consen 488 EEDLEFLRRIYPRLKRWYNWFNTTQAGDIPGSYRWRGRDPTTDRELNPHTLTSGLDDYPRASHPSDSERHVDLTSWMAFF 567 (801)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEcCCCCCccccccccCcCCCCCCCCCCCCCCccceechHHHHHHHH
Confidence 2679999999999999999975 1100 00 0 0011221 1111 5556777788
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCcc---eeeecCCCC-------C----------------CCCcc
Q psy5277 116 LACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTGS---YYKFDSSQS-------R----------------HSDSI 169 (314)
Q Consensus 116 L~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~~---~~~~d~~~~-------~----------------~~~~~ 169 (314)
.+.|++||..||.++.+.+|.+.++.+.+++++..||++ ||++..... . .....
T Consensus 568 a~~M~~IA~~L~~~d~~~ef~~~~~~i~~~l~~~hWdeedgfYyD~~~~~~~v~l~~~~~~~~~~~~~~~~r~~~~~~~~ 647 (801)
T PF03200_consen 568 ALNMARIALELGKEDDAYEFFEHFEYISDALNKLHWDEEDGFYYDVGLHPDAVRLEWKEVLENGQFRRELVRVVRGEPQL 647 (801)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCCcccCceeeeccccccceecccccccccccchhheecccCCccc
Confidence 899999999999988888899999999999999999853 556422111 0 00000
Q ss_pred ccccccc--hhhhhhcCCCCCCCCC--hHHHHHHHHHHHh--hccCCcCCCccccccCCC------CCCCCCCCCCCCCC
Q psy5277 170 MADQLCG--YLFLKASGVNTEAIFP--SANIARALATIFS--TNVRGFEAGSMGAVNGMK------PNGDRDRSAIQSEE 237 (314)
Q Consensus 170 ~~~ql~g--q~~~~~lgl~~~~il~--~e~~~~~l~~v~~--~~~~~~~gG~~G~~~~~~------p~g~~~~~~~~~g~ 237 (314)
.-..-.| ..++.++ ++++ .++.+++|+.+.+ .++++| |...... +...-..+++=.|-
T Consensus 648 ~~v~~~Gyvsl~Plll-----~ll~~ds~~L~~~L~~l~D~~ef~s~y-----GirSLSk~~~~y~~~~~e~d~~YWRGp 717 (801)
T PF03200_consen 648 QLVCHFGYVSLFPLLL-----GLLPPDSERLERLLERLLDEDEFWSPY-----GIRSLSKSDPFYGPGENEHDPSYWRGP 717 (801)
T ss_pred cceeeecccCCCchhh-----ccCCCCHHHHHHHHHHhcChhhccCCC-----CCccccCCCccccccCCccCCCcccCc
Confidence 0000111 1223344 3454 4688899999973 566765 3321111 11111224566678
Q ss_pred CCccHHHHHHHHHHHCCC-----hHHHHHH----HHHHHHHHH---HHhCCCCCCCccccCC-CCCCCCCchhhhHHHHH
Q psy5277 238 VWTGVTYLLSAAMLYEGN-----VDEAWTT----AGGLYRTVY---ERTGLGFETPEGLTGD-KTYRSGGYMRALAVYAM 304 (314)
Q Consensus 238 vW~~~~~~lA~~~~~~G~-----~~~A~~l----~~~~~~~~~---~~~g~~~~~PE~~~~~-g~~~~~~Y~r~~~~w~~ 304 (314)
||+.+||++..+|.++|. .++|.++ .+.+++++. .++|+ +=|+|++. |...++ ++-..|+.
T Consensus 718 IW~~~NyL~i~aL~~y~~~~g~~~~~a~~~y~~Lr~nli~nv~~~~~~tg~---~~E~Y~~~tG~g~g~---~~FtGWts 791 (801)
T PF03200_consen 718 IWIPINYLLIEALRRYGYYYGPYQERAKEIYKELRKNLINNVYKEYKRTGY---FWEQYNPETGRGQGA---HPFTGWTS 791 (801)
T ss_pred cchhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccc---EEEeECCCCCcccCC---CCCCchHH
Confidence 999999999999999984 3445443 333444432 44564 55899887 665443 36667876
Q ss_pred HHHH
Q psy5277 305 QDAY 308 (314)
Q Consensus 305 ~~al 308 (314)
+-++
T Consensus 792 lv~~ 795 (801)
T PF03200_consen 792 LVVL 795 (801)
T ss_pred HHHH
Confidence 6554
No 24
>KOG0602|consensus
Probab=98.96 E-value=4.3e-08 Score=96.75 Aligned_cols=254 Identities=15% Similarity=0.118 Sum_probs=163.0
Q ss_pred HHHHHHhhhhccccc-ccCC-CCCCcccCCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Q psy5277 9 EVKFRSAANTHERYY-TRWF-PEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCE 86 (314)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~g~-p~~~p~~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~ 86 (314)
.+.+++|++-|+--+ +-|. ||. ..-.|.. -.-+|++-.++++||+.|+|.+|+++.+|.+.+=++|-.
T Consensus 204 ~~takGmieNf~~lV~~yG~ipNg----~R~YYl~------RSQPPllt~Mv~~~y~~t~~~~~~~~~l~tl~kEy~fw~ 273 (600)
T KOG0602|consen 204 FDTAKGMIENFISLVDTYGFIPNG----GRVYYLN------RSQPPLLTGMVYEYYEATNDEQFLKRALPTLIKEYEFWT 273 (600)
T ss_pred cHHHHHHHHHHHHHHHhcCcccCC----Ceeeeec------cCCCchhhhhHHHhhhccCcHHHHHHHHHHHhhheeccc
Confidence 467888888777777 5577 883 2234444 566788999999999999999999999999999998544
Q ss_pred h---hCCCCCc--ccc----cCCCCchH----------------------------------------------------
Q psy5277 87 S---FDKQGLG--IVQ----NGGFPDQT---------------------------------------------------- 105 (314)
Q Consensus 87 ~---~d~d~dG--L~~----~~g~~d~t---------------------------------------------------- 105 (314)
+ .++..+| |-. ..++.+.+
T Consensus 274 ~~~~~~~~~~~~~l~~y~~~~~~prPEsy~~d~e~~e~~~t~~~~~~~~~~l~~~aesg~DfSsrw~~~~~t~~~~~t~~ 353 (600)
T KOG0602|consen 274 NNRTEDVKDEGKVLSRYRVMGSGPRPESYREDFETAEHLKTEKEKQQLYQDLAAAAESGWDFSSRWFAVNGTLSSIGTTD 353 (600)
T ss_pred CCCccccccCCceeEEEeccCCCCCCcchHHHHHHHhcccchHHHHHHHHHHhhcCcccchhHHHhhccCCccccccccc
Confidence 3 1222233 211 00100000
Q ss_pred ---HhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcC---cceeeecCCCCCCCCccccccccchhh
Q psy5277 106 ---AYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWT---GSYYKFDSSQSRHSDSIMADQLCGYLF 179 (314)
Q Consensus 106 ---~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~---~~~~~~d~~~~~~~~~~~~~ql~gq~~ 179 (314)
+-.|++++..++.|+.+....|+.+.++.|+++++..+.+|++.||| |.||+||.....+....-+..+ +
T Consensus 354 ~vpvDLN~~~~~~~~i~~y~~~~~Gd~~~s~~~~~k~~~r~~~i~~vlWde~~g~w~DYd~~~~~~~~~~~~sn~----~ 429 (600)
T KOG0602|consen 354 LVPVDLNLLYKWNADIMKYFYVVDGDPKDSAQFEKKSEQRRAAIQEVLWDEEDGAWFDYDLELKKHNTYFYASNF----A 429 (600)
T ss_pred ccccchHHHHHhhHHHHhhhcccCCChhHHHHHHHHHHHHHHHHHHhccCCCCCcceeccccccccCCCcCchhh----h
Confidence 55688999999999999999999999999999999999999999998 4588888654222222222333 3
Q ss_pred hhhcCCCCCCCCChH-HHHHHHHHHHhhccCCcCCCccccccCCCCCCCCCCCCC--CCCCCCccHHHHHHHHHHHCC--
Q psy5277 180 LKASGVNTEAIFPSA-NIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAI--QSEEVWTGVTYLLSAAMLYEG-- 254 (314)
Q Consensus 180 ~~~lgl~~~~il~~e-~~~~~l~~v~~~~~~~~~gG~~G~~~~~~p~g~~~~~~~--~~g~vW~~~~~~lA~~~~~~G-- 254 (314)
+...+.- ...+++ .+..+++.+.+.-.- ..+.|++.+++ ++.- ..-++|+-...++-.++++.|
T Consensus 430 Pl~~~~~--~~~~~~~~~~~v~~~le~~g~~-------~~p~giP~Sl~--~s~eQWD~Pn~WaP~q~m~~~gl~~~~~~ 498 (600)
T KOG0602|consen 430 PLWAGCY--PAPDDDKSVDKVLDYLEKSGAL-------TFPGGIPTSLS--NSGEQWDFPNGWAPNQHMAIEGLRRAGNQ 498 (600)
T ss_pred hhhccCC--CcccccchHHHHHHHHHHcCCc-------CCCCCCcccCC--CchhhccCCCCCCcceehhhhhhhhcCCH
Confidence 4445442 333444 566666666553211 12222211111 1111 112688888888889999999
Q ss_pred -ChHHHHHHHHHHHHHHHHHhCCCCCCCccccCC
Q psy5277 255 -NVDEAWTTAGGLYRTVYERTGLGFETPEGLTGD 287 (314)
Q Consensus 255 -~~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~ 287 (314)
..+.|++++..-+.....-+--.+.++|-++-.
T Consensus 499 ~~~~~A~kla~~wl~~~~~~~~~~g~~~EKY~vt 532 (600)
T KOG0602|consen 499 ELQEVALKLAQRWLETNFAVFVDSGGMFEKYDVT 532 (600)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccCceeEeeccc
Confidence 568888888776665533221124466666543
No 25
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=98.69 E-value=2e-07 Score=91.45 Aligned_cols=192 Identities=12% Similarity=0.165 Sum_probs=114.6
Q ss_pred cccChhHHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHHHh-hCCCCCcccccCCCCchHHh--HHHHHHHHHHHHHHH
Q psy5277 48 KDLNLKFIVSIYRDYALHKDIRFLTRVYPT--CLELIRKCES-FDKQGLGIVQNGGFPDQTAY--CGGLHIAALACMVEM 122 (314)
Q Consensus 48 ~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~--vk~al~~~~~-~d~d~dGL~~~~g~~d~t~~--~~al~y~AL~~~a~l 122 (314)
.|.+.++++++++|. .....+....++. |+..++|+.+ ++..+-||=|... ... .+ +....++||..++++
T Consensus 125 ~D~~gl~l~~l~~~~--~~g~~~~~~~~~~~~I~~~~~yi~~~w~~pd~dlWEe~~-g~~-~f~~S~~~~~~AL~~a~~~ 200 (448)
T PF00723_consen 125 NDGPGLRLLALWQYI--DSGLQIIYTYWEVSFIKNDLDYIERNWREPDFDLWEERN-GIH-FFTASSAMQWAALLRAANL 200 (448)
T ss_dssp THHHHHHHHHHHHHH--HTTHHHHHTHHHHHTHHHHHHHHHHHTTSBEE-TTSS-E-EEE-HH--HHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHH--HcCCCcccccchhHHHHHHHHHHHHHcCCcCCccccccC-CCC-ccchhHHHHHHHHHHHHHH
Confidence 477788999999983 2337888889999 9999999988 4443446655331 112 34 677778999999999
Q ss_pred HHHcCCcHHHHHHHHHHHHHHHHH------HHhCcCcc-eee-ecCC----CC---CCCCccccccccchhhhhhcCCCC
Q psy5277 123 SSLLNDTQQQQQFSAKLTKASQVY------HDLLWTGS-YYK-FDSS----QS---RHSDSIMADQLCGYLFLKASGVNT 187 (314)
Q Consensus 123 A~~lG~~~~a~~~~~~a~~~k~~~------~~~lW~~~-~~~-~d~~----~~---~~~~~~~~~ql~gq~~~~~lgl~~ 187 (314)
|+.+|++..++.|++.++++++.+ .+.+|+.. +|. .+.. .. ..+..+.++.++ +..+++.
T Consensus 201 a~~~g~~~~~~~~~~~a~~i~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~slll----~~~~~~~- 275 (448)
T PF00723_consen 201 AELFGDPGDAERWRETADEIRERLEGWYGLERGFWPEFGYFIRIYGSFSGNSEQVQGYRSGLDASLLL----LPLFGFV- 275 (448)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHHHHHHEESGGGBTTSSBESEESSSEETTTCCEEEGSGS-BTHHHH----HHHTTSS-
T ss_pred HHHcCCchHHHHHHHHHHHHHHHhhhhccccccccCCCCeEEEecCCccccchhhhcchhhHHHHHHH----HHHccCC-
Confidence 999999999999999999999999 34577643 233 2221 00 023344444333 2334332
Q ss_pred CCCCCh----------HHHHHHHHHHHhhccCCcC--CCccccccCCCCCCCCC-CCCCCCCCCCccHHHHHHHHHH
Q psy5277 188 EAIFPS----------ANIARALATIFSTNVRGFE--AGSMGAVNGMKPNGDRD-RSAIQSEEVWTGVTYLLSAAML 251 (314)
Q Consensus 188 ~~il~~----------e~~~~~l~~v~~~~~~~~~--gG~~G~~~~~~p~g~~~-~~~~~~g~vW~~~~~~lA~~~~ 251 (314)
..++ +++...+..|.+.+...+- .|......+-+| ++.. ...--.|+||..+|+|.|..+.
T Consensus 276 --~~~d~~~~~~~p~sp~~~~T~~~i~~~l~~~~~in~g~~~~~~~RY~-~D~y~~~~~~~G~pw~l~T~w~ae~l~ 349 (448)
T PF00723_consen 276 --PPDDVDDERFQPHSPRVLNTLKAIEEELRVDYPINPGDIDPGIGRYP-EDVYDDGLGSEGNPWFLCTFWAAEALY 349 (448)
T ss_dssp --TTT-S-TTTTTTTSHHHHHHHHHHHHCTTTTEGGGTT-STTSEBSCT-T--GGSSSBTGS-CBHHHHHHHHHHHH
T ss_pred --CcccccccccccccHHHHHHHHHHHHHHHHhcCCCccccCccceecc-cccccCccCCCCccceeeechhHHHHH
Confidence 2344 7999999999886543310 000000011111 1110 0111268999999999665543
No 26
>COG1626 TreA Neutral trehalase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=1.6e-05 Score=77.63 Aligned_cols=234 Identities=12% Similarity=0.070 Sum_probs=155.7
Q ss_pred hHHHHHHhhhhccccc-ccCC-CCCCcccCCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q psy5277 8 GEVKFRSAANTHERYY-TRWF-PEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKC 85 (314)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~~g~-p~~~p~~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~ 85 (314)
+..++.+|+.-|+--+ .-|. ||. -.-.|.+ -.-+|.|-.++..+++..| .+++++..|.+++..++.
T Consensus 189 r~d~a~~Mv~nF~~~Ie~yG~IpNg----nRtYyLs------RSQPPff~~Mv~~~~~~~g-~~~~~r~l~~~~key~~w 257 (558)
T COG1626 189 RWDLAKGMVDNFAYEIETYGHIPNG----NRTYYLS------RSQPPFFALMVELVAEHEG-VAALKRYLPALIKEYAYW 257 (558)
T ss_pred cHHHHHHHHHHHHHHHHHhccccCC----ceeeEee------cCCCCcHHHHHHHHHHhhc-HHHHHHHHHHHHHHHHHH
Confidence 4567888888666666 4477 772 1123333 5667778888999999999 677888888877777666
Q ss_pred Hh-------------hCCCCCccc---ccCC------C----------------------------------CchH----
Q psy5277 86 ES-------------FDKQGLGIV---QNGG------F----------------------------------PDQT---- 105 (314)
Q Consensus 86 ~~-------------~d~d~dGL~---~~~g------~----------------------------------~d~t---- 105 (314)
.. ....+||.+ .++- + .|-|
T Consensus 258 ~~~~~~l~~~~~~~~~~~~~dG~~pe~ln~y~dd~~tpr~Esy~~t~~~a~~~~~r~~~eiy~~dRA~reSGwD~ssRw~ 337 (558)
T COG1626 258 MDGVPSLQPKQGYSRVVTLGDGSPPEVLNRYWDDRDTPRQESYHETIATAKHNPERPLDEIYRDDRAGRESGWDFSSRWL 337 (558)
T ss_pred hccCcccCccccceeEEecCCCCchhhhhhhhcccCCccchhhhhhHHHhhcCcCCChHhhhcchhhhHhccCccccccc
Confidence 54 113356763 2110 0 0000
Q ss_pred ----------------HhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCc---ceeeecCCCCCCC
Q psy5277 106 ----------------AYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTG---SYYKFDSSQSRHS 166 (314)
Q Consensus 106 ----------------~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~---~~~~~d~~~~~~~ 166 (314)
++.|++.|...+..+++.+..|+.+.++.|+++|+.=+++||+.+|+. .|++||-......
T Consensus 338 g~~~~LasIrt~~~~p~dlna~~y~~e~~~~~~~~~~~~~~~~e~~~~~A~~R~~aI~~ylW~~e~G~~~DYd~k~~~~~ 417 (558)
T COG1626 338 GVPAPLASIRTTSILPVDLNALLYKLEEIIANISAIKGDKETAERYQRKAEARRCAINKYLWDDEAGQYNDYDWKLKKRR 417 (558)
T ss_pred CCCccccceeccccchhhhhhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHccccccceeehhhhhccccc
Confidence 777999999999999999999999999999999999999999999974 3555775432111
Q ss_pred CccccccccchhhhhhcCCCCCCCCChHHHHHHHHHHHhhccCCcCCCccccccCCCCCCCCCCCCCCCCCCCccHHHHH
Q psy5277 167 DSIMADQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLL 246 (314)
Q Consensus 167 ~~~~~~ql~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~~~~~~~gG~~G~~~~~~p~g~~~~~~~~~g~vW~~~~~~l 246 (314)
.-.. +..++++.. |..+.+|++++++.+...+..+ .|.+.....+|.- -.--+.|.-+.++.
T Consensus 418 ~y~~----a~~~~plw~-----G~a~~era~~~a~~~~~~l~~p-----GGl~ast~~s~~Q----WD~PNgWaPlq~ia 479 (558)
T COG1626 418 AYLS----AAALWPLWV-----GLATPERAQRLADAALSMLEQP-----GGLSASTPRSGQQ----WDYPNGWAPLQWIA 479 (558)
T ss_pred cccc----hhhhhhccC-----CCCCHHHHHHHHHHHHHHhcCC-----Cceeccccccccc----ccCCCCCccHHHHH
Confidence 1122 222334444 5568999999999886633222 1222222111100 00016788888999
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHH
Q psy5277 247 SAAMLYEGNVDEAWTTAGGLYRTV 270 (314)
Q Consensus 247 A~~~~~~G~~~~A~~l~~~~~~~~ 270 (314)
..++.++|....|.++....+..+
T Consensus 480 ~~gL~ryG~~~la~~ia~rwL~~v 503 (558)
T COG1626 480 TQGLKRYGYDILADDIARRWLTNV 503 (558)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999998877776
No 27
>KOG3625|consensus
Probab=98.32 E-value=4.1e-05 Score=78.36 Aligned_cols=284 Identities=15% Similarity=0.132 Sum_probs=172.8
Q ss_pred cccchhhHHHHHHhhhhcccccccCC-CCCCcccCCCccccccCCcccccChhHHHHHHHHHHHhCC-HH----------
Q psy5277 2 SLVWTMGEVKFRSAANTHERYYTRWF-PEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKD-IR---------- 69 (314)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~g~-p~~~p~~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD-~~---------- 69 (314)
+|.-|-|.++++.++-.|..-.+.|. ||-.--+.-+.||..|+.=| |+.++.+|.+..-| .+
T Consensus 1094 ~ll~TGRy~EAr~iIlaFa~tlrHGLIPNLLd~G~~~RyNcRDA~W~------wl~~Iq~Yve~vPnG~~ILkd~VsRiy 1167 (1521)
T KOG3625|consen 1094 ILLITGRYVEARNIILAFAGTLRHGLIPNLLDEGIYARYNCRDAVWW------WLQCIQDYVEMVPNGLDILKDPVSRIY 1167 (1521)
T ss_pred ceEeecchHHHHHHHHHHHHHhhccccchhhhccccccccchHHHHH------HHHHHHHHHHhCCChhhhhhCchheeC
Confidence 35568899999999999999999999 99777777889999887777 99999999875432 12
Q ss_pred ------------HHHHHHHHHHHHHHHHHh---------------hCCC-----------CCcccccCCC------Cc--
Q psy5277 70 ------------FLTRVYPTCLELIRKCES---------------FDKQ-----------GLGIVQNGGF------PD-- 103 (314)
Q Consensus 70 ------------fl~~~~p~vk~al~~~~~---------------~d~d-----------~dGL~~~~g~------~d-- 103 (314)
|=+-+...++.|++-+.+ +..| ++|++.++.. +|
T Consensus 1168 P~DDs~v~~pgaf~q~L~evi~Eal~kH~qGiqfRErnAGpqiD~~M~DeGFnv~~gV~~~TGfv~GGn~~NCGTWMDKM 1247 (1521)
T KOG3625|consen 1168 PTDDSAVLPPGAFDQPLFEVIQEALQKHFQGIQFRERNAGPQIDRNMKDEGFNVTAGVDEETGFVYGGNRFNCGTWMDKM 1247 (1521)
T ss_pred CCCCcccCCCchhhHHHHHHHHHHHHHHhccccchhccCCcccchhhhccCcceeeccccccceeecCCccccchhhhhc
Confidence 222233356666665542 0011 3566654310 00
Q ss_pred -h-----------H------HhHHHHHHHHHHHHHHHHHHc------------CCcHHHHHHHHHHHHHHHHHHHhCcC-
Q psy5277 104 -Q-----------T------AYCGGLHIAALACMVEMSSLL------------NDTQQQQQFSAKLTKASQVYHDLLWT- 152 (314)
Q Consensus 104 -~-----------t------~~~~al~y~AL~~~a~lA~~l------------G~~~~a~~~~~~a~~~k~~~~~~lW~- 152 (314)
. | +++++|-+.||+.+.++++.- |+. .-=.|.++++++++.|++.|+-
T Consensus 1248 GeSerAgnkG~PaTPRDGsAVEi~GL~~salrfl~elkek~ifpy~~Ve~k~~g~~-~k~s~~eW~qkiqdNFeK~ffV~ 1326 (1521)
T KOG3625|consen 1248 GESERAGNKGIPATPRDGSAVEIVGLSKSALRFLLELKEKNIFPYHGVEVKRHGKA-IKWSYDEWNQKIQDNFEKLFFVS 1326 (1521)
T ss_pred ccchhccCCCCCCCCCCCceeehhhhHHHHHHHHHHHHhcCCccccceEEeccccc-ceecHHHHHHHHHhhhhheeccc
Confidence 0 0 899999999999999999861 111 1135899999999999998873
Q ss_pred cceee--------------e-cCCC--CC-CCCccccccccchhhhhhcCCCCCCCCChHHHHHHHHHHHhhccCCcCCC
Q psy5277 153 GSYYK--------------F-DSSQ--SR-HSDSIMADQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAG 214 (314)
Q Consensus 153 ~~~~~--------------~-d~~~--~~-~~~~~~~~ql~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~~~~~~~gG 214 (314)
+.-+. | |+-+ .+ -|-..++|+-.+ +.-.| .+.++++|-++|+...+.+..+.
T Consensus 1327 ed~s~~~~~~~~~vnkr~IykDsygat~~~tDyQLR~NF~Ia-----mtVAP--eL~~pe~A~kAle~AekvLlGPl--- 1396 (1521)
T KOG3625|consen 1327 EDPSDLNEKHPNLVNKRGIYKDSYGATSPWTDYQLRPNFTIA-----MTVAP--ELFTPEKAWKALEIAEKVLLGPL--- 1396 (1521)
T ss_pred CCcchhhhhcccccchhheecccccCCCCccceeccCCceeE-----EEech--hhcChHHHHHHHHHHHHHhcCcc---
Confidence 21111 1 1100 00 133344443321 11124 67889999999999988776553
Q ss_pred ccccccC---------CCCCCCCCC--------CCCCCCCCCccH--HHHHHHHHHHC--CC--hHHHHHH----HHHHH
Q psy5277 215 SMGAVNG---------MKPNGDRDR--------SAIQSEEVWTGV--TYLLSAAMLYE--GN--VDEAWTT----AGGLY 267 (314)
Q Consensus 215 ~~G~~~~---------~~p~g~~~~--------~~~~~g~vW~~~--~~~lA~~~~~~--G~--~~~A~~l----~~~~~ 267 (314)
|.... .+..+ .|. ..||+|--|.|. -|.-|.+.+.. |- .+.+... ++.-.
T Consensus 1397 --GMkTlDP~D~nYr~yYdN~-~Ds~d~~takG~NYHQGPEWlw~~GyfLrArl~f~~k~gp~~~~y~i~qv~~rL~~h~ 1473 (1521)
T KOG3625|consen 1397 --GMKTLDPDDWNYRGYYDNA-LDSDDYNTAKGFNYHQGPEWLWPIGYFLRARLYFSRKMGPETTAYTIVQVKNRLSRHY 1473 (1521)
T ss_pred --cccccChhhcccccccCCC-ccccchhhhccccccCCCceeehhHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Confidence 33211 11111 111 256777545444 56666655543 42 2333332 33333
Q ss_pred HHHHHHhCCCCCCCccccCCCCCCCCCchhhhHHHHHHHHHc
Q psy5277 268 RTVYERTGLGFETPEGLTGDKTYRSGGYMRALAVYAMQDAYL 309 (314)
Q Consensus 268 ~~~~~~~g~~~~~PE~~~~~g~~~~~~Y~r~~~~w~~~~al~ 309 (314)
.++ .+.- ...+||+-..+|.+.. -.++.|+||+..-|.
T Consensus 1474 k~l-~~S~-WrgLpELTN~ngeyC~--dSc~tQAWSvacile 1511 (1521)
T KOG3625|consen 1474 KHL-ERSP-WRGLPELTNENGEYCP--DSCETQAWSVACILE 1511 (1521)
T ss_pred HHH-hhcc-ccCchhhccCCcCccc--ccchHhHHHHHHHHH
Confidence 333 2222 2358999999998753 234999999987553
No 28
>PF06824 DUF1237: Protein of unknown function (DUF1237); InterPro: IPR008313 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2P0V_B 3QSP_B 3QPF_A 3QRY_A 3ON6_A 3QT9_A 3QT3_A 2NVP_A 3P2C_B.
Probab=98.17 E-value=3.5e-05 Score=73.87 Aligned_cols=227 Identities=15% Similarity=0.155 Sum_probs=123.3
Q ss_pred ccChhHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHh-hC----CCCCcc-----------------ccc-CCC---
Q psy5277 49 DLNLKFIVSIYRDYALHKDIRFLTRV-YPTCLELIRKCES-FD----KQGLGI-----------------VQN-GGF--- 101 (314)
Q Consensus 49 D~~~~fi~~~~~y~~~TgD~~fl~~~-~p~vk~al~~~~~-~d----~d~dGL-----------------~~~-~g~--- 101 (314)
|.-..||-..+.||+.|||.+|+.+- ..+++.+++=... .+ .++++. +.. .|.
T Consensus 128 DSL~~~l~La~~y~~~Tgd~~~f~~~~~~A~~~il~~~~~eq~~t~~~~~~~~~s~Y~F~R~~~~~tdtl~~~G~G~pv~ 207 (424)
T PF06824_consen 128 DSLCYFLQLAYQYWKATGDTSFFDEDWLRAVRLILDTWRTEQRPTYDEDHEGLPSPYRFQRPTCRPTDTLPNDGRGNPVA 207 (424)
T ss_dssp HHHHHHHHHHHHHHHHH--GTTSSHHHHHHHHHHHHHHHHTTG------SSSCS-S---BESBSSGGGS-HHHHT-S---
T ss_pred hhhhHHHHHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCcceeeccCCCCCccccCCCcCCcCC
Confidence 44456788999999999999998764 4677777776654 11 112221 100 010
Q ss_pred ------------CchH-----HhHHHHHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHHHHHHHhCcC-----ccee
Q psy5277 102 ------------PDQT-----AYCGGLHIAALACMVEMSSLLNDTQ---QQQQFSAKLTKASQVYHDLLWT-----GSYY 156 (314)
Q Consensus 102 ------------~d~t-----~~~~al~y~AL~~~a~lA~~lG~~~---~a~~~~~~a~~~k~~~~~~lW~-----~~~~ 156 (314)
.|-+ +..|.+...+|+.+++|++.++..+ ++++.++++++++++|.++.-- |+-|
T Consensus 208 ~tGli~S~FRPSDDa~~y~yliPsNm~a~v~L~~laei~~~~~~~~~~~la~~~~~la~eI~~gI~~~giv~h~~~g~iy 287 (424)
T PF06824_consen 208 YTGLIWSGFRPSDDACIYPYLIPSNMFAVVALEYLAEILRALGWDDSAELAERARALADEIRAGIEKHGIVEHPKFGKIY 287 (424)
T ss_dssp -SSS-B-SB-TTSSB-SSSEEHHHHHHHHHHHHHHHHHHHHTT-THHHHHHHHHHHHHHHHHHHHHHHSEEEETTTEEEE
T ss_pred CCCceecCcCCCCcchhcCcCChHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHheEEeCCCCCeEE
Confidence 0111 6679999999999999999887554 8999999999999999998773 2345
Q ss_pred eecCC--CC--CCCCccccccccchhhhhhcCCCCCCCCChHHHHHHHHHHHhhccCCc--CCC-ccccccCCCCCCCCC
Q psy5277 157 KFDSS--QS--RHSDSIMADQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGF--EAG-SMGAVNGMKPNGDRD 229 (314)
Q Consensus 157 ~~d~~--~~--~~~~~~~~~ql~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~~~~~~--~gG-~~G~~~~~~p~g~~~ 229 (314)
.|... +. -.|+...|+-|. +..+|. --.+++.=+++.+.|.+....+| .|. .-|. |++.
T Consensus 288 AYEVDG~G~~~~mDDANvPSLLS----lPylGf---~~~~DpvYqnTR~~iLS~~~NPyy~~G~~~~Gi-------GsPH 353 (424)
T PF06824_consen 288 AYEVDGFGNHLLMDDANVPSLLS----LPYLGF---CSKDDPVYQNTRRFILSPEGNPYYFSGKAASGI-------GSPH 353 (424)
T ss_dssp -SEE-SSS-EE----SSSS-STT----HHHHTS---S-TT-HHHHHHHHHHTSTT-STTEEEESSEEEE---------TT
T ss_pred EEEecCCCCccccCCCCCchHhh----hhhcCC---CCCCcHHHHHHHHHHhCCCCCCccccCCCcCCC-------CCCC
Confidence 55332 22 124444443322 223432 23467777777777766441232 111 1111 3333
Q ss_pred CCCCCCCCCCccHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhCCCCCCCccccCC-CCCCCCCchhhhHHHH
Q psy5277 230 RSAIQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGD-KTYRSGGYMRALAVYA 303 (314)
Q Consensus 230 ~~~~~~g~vW~~~~~~lA~~~~~~G~~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~-g~~~~~~Y~r~~~~w~ 303 (314)
.+ .+.+||.- .+.+++ -..+.+|-.+.++.+.+.. -| .+-+-|.|+.+ +. .|.|+-=+|+
T Consensus 354 t~---~~~iWPms--l~~~~l-Ts~d~~Ei~~~L~~L~~t~---~g-tGlmHES~d~~~~~----~~TR~WFaWa 414 (424)
T PF06824_consen 354 TP---PGYIWPMS--LAMQGL-TSDDDEEIRECLRMLKRTT---AG-TGLMHESFDVDDPS----KFTRPWFAWA 414 (424)
T ss_dssp T----TTEEEHHH--HHHHHH-T-S-HHHHHHHHHHHHHTS---TT-SSS--SEEETTEEE----EEE-S-BHHH
T ss_pred CC---CCCccHHH--HHHHHh-cCCCHHHHHHHHHHHHhcc---CC-CCceeccccCCCCc----ccCcHHHHHH
Confidence 22 24688822 111122 2245566666666655443 23 56689999988 55 8999988885
No 29
>KOG2161|consensus
Probab=98.06 E-value=0.00069 Score=68.29 Aligned_cols=284 Identities=16% Similarity=0.176 Sum_probs=162.4
Q ss_pred ccchhhHHHHHHhhhhccccc--ccCCCCCCcc------cCCCccccccCCcccccChhHHHHHHHHHHHhC------C-
Q psy5277 3 LVWTMGEVKFRSAANTHERYY--TRWFPEEEPF------SLINGYNVFDVSDWKDLNLKFIVSIYRDYALHK------D- 67 (314)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~g~p~~~p~------~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~Tg------D- 67 (314)
++|.+-......++..+.--+ |...|.+--. ..++++.++-. |.-.+|-.+++++++++.-. |
T Consensus 450 ~i~~~D~~~t~Eil~sW~~l~n~DGWi~RE~iLG~EA~skvP~efivQ~~--~~aNPPTLllav~~~~~~~~~~~~~~~r 527 (849)
T KOG2161|consen 450 LIWEWDFDLTLEILASWFPLMNIDGWIPREQILGTEARSKVPNEFIVQYP--DNANPPTLLLAVYRLLNREREMYGREDR 527 (849)
T ss_pred hhhhcCccchHHHHHHHHhhhcccccchHHHHhhhHHHhhCCchhcccCc--cCCCCceeHHHHHHHHhhhhhhccccch
Confidence 566666666666666555544 3222553322 23456655433 34477889999999976422 2
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhCCCCCcccc-----------c-----------------CCCCch-------H----Hh
Q psy5277 68 -IRFLTRVYPTCLELIRKCESFDKQGLGIVQ-----------N-----------------GGFPDQ-------T----AY 107 (314)
Q Consensus 68 -~~fl~~~~p~vk~al~~~~~~d~d~dGL~~-----------~-----------------~g~~d~-------t----~~ 107 (314)
.+||++++|.+.+...|..+- ..|... . +|..|- . +.
T Consensus 528 ~~~fL~r~fprLl~~f~Wf~~s---Q~G~~~~~~~~~n~~YrWrGR~~~~~t~lnp~~L~SGlDDyPRAs~Ps~~ElhvD 604 (849)
T KOG2161|consen 528 SLTFLKRLFPRLLKWFTWFRKS---QEGKNVFEEGFDNEGYRWRGRDLPTGTTLNPHCLSSGLDDYPRASHPSVLELHVD 604 (849)
T ss_pred HHHHHHHHHHHHHHhhhhhhhc---ccCCcccccccccceeEeccCCCCCCceeccccccccccccccccCchHHHHhhh
Confidence 399999999999999998751 111111 0 110000 0 33
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCcc---eeeecCCCCCCCCccc--------------
Q psy5277 108 CGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTGS---YYKFDSSQSRHSDSIM-------------- 170 (314)
Q Consensus 108 ~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~~---~~~~d~~~~~~~~~~~-------------- 170 (314)
.-+...-|-+.+-.+|+.+|+.+....+...-.+.++.+.+..|+++ |+++-..+. +..+.
T Consensus 605 l~~W~~lasrsl~~iae~lg~~~~E~~~a~~e~~~~e~L~~~HW~ee~~~y~D~g~h~~--dv~~~~~p~~g~~~r~~~r 682 (849)
T KOG2161|consen 605 LRCWVGLASRSLNRIAEFLGETEAEYATAITELECKENLVQNHWSEEDQAYCDFGNHTE--DVSITPEPSIGKQFRGLVR 682 (849)
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHHHHhccChhhCeeeeccCChh--hccccccCCcccchhhhhe
Confidence 44556678899999999999887333344555677888999999853 555422211 00111
Q ss_pred ------cc-ccc----c--hhhhhhcCCCCCCCCChHHHHHHHHHHHh--hccCCcCCCccccccCCCCC---C---CCC
Q psy5277 171 ------AD-QLC----G--YLFLKASGVNTEAIFPSANIARALATIFS--TNVRGFEAGSMGAVNGMKPN---G---DRD 229 (314)
Q Consensus 171 ------~~-ql~----g--q~~~~~lgl~~~~il~~e~~~~~l~~v~~--~~~~~~~gG~~G~~~~~~p~---g---~~~ 229 (314)
++ ++. | ..++..+.|- +.+.++-.++|+.+.+ .++++| |.....+.+ | .-+
T Consensus 683 ~v~~~~p~~e~v~~h~GYvSl~P~mlrLl---p~~S~rL~~~Ldli~D~~~lwSpY-----GlrSLS~~s~yym~~Nte~ 754 (849)
T KOG2161|consen 683 RVDWFVPNLELVDRHIGYVSLFPFMLRLL---PATSPRLTKLLDLISDENELWSPY-----GLRSLSRSSPYYMKRNTEH 754 (849)
T ss_pred eccccCCcceeeecccceeehhhhHHhhc---CCCchHHHHHHHHhcCcccccCcc-----hhhhhhhcCCccccccCCC
Confidence 00 111 0 1123334331 2457888999999865 346665 332221111 2 122
Q ss_pred CCCCCCCCCCccHHHHHHHHHHH-CCC-----hHHHHHHHHHH----HHHH---HHHhCCCCCCCccccCC-CCCCCCCc
Q psy5277 230 RSAIQSEEVWTGVTYLLSAAMLY-EGN-----VDEAWTTAGGL----YRTV---YERTGLGFETPEGLTGD-KTYRSGGY 295 (314)
Q Consensus 230 ~~~~~~g~vW~~~~~~lA~~~~~-~G~-----~~~A~~l~~~~----~~~~---~~~~g~~~~~PE~~~~~-g~~~~~~Y 295 (314)
++++=.|-+|+.+||++-..|.+ ++. ...|.+|.+.+ +.+. ++++|+ +=|+|++. |+-.++
T Consensus 755 d~pYWRGpIW~N~NYLiLsaL~~~Y~~~~gp~~~nA~~iyeELRaNlv~Nv~k~~~~tG~---~wE~Yd~~tG~G~ga-- 829 (849)
T KOG2161|consen 755 DPPYWRGPIWMNVNYLILSALRHFYLYVPGPYQSNAAKIYEELRANLVGNVSKQWQQTGY---FWENYDPRTGRGLGA-- 829 (849)
T ss_pred CCcccccceeeehHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHhhccce---eeeecCCCCCCcccc--
Confidence 35677788999999999998887 432 25565554432 2222 245665 34888887 663333
Q ss_pred hhhhHHHHHHHH
Q psy5277 296 MRALAVYAMQDA 307 (314)
Q Consensus 296 ~r~~~~w~~~~a 307 (314)
|+-..|+.+-+
T Consensus 830 -~~FtGWTaLVl 840 (849)
T KOG2161|consen 830 -RHFTGWTALVL 840 (849)
T ss_pred -ccccchHHHHH
Confidence 56667765543
No 30
>COG3538 Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.15 Score=47.92 Aligned_cols=225 Identities=16% Similarity=0.153 Sum_probs=120.0
Q ss_pred ccChhHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHh-hCCC--------------CCcccccC-CC------CchH
Q psy5277 49 DLNLKFIVSIYRDYALHKDIRFLTRVY-PTCLELIRKCES-FDKQ--------------GLGIVQNG-GF------PDQT 105 (314)
Q Consensus 49 D~~~~fi~~~~~y~~~TgD~~fl~~~~-p~vk~al~~~~~-~d~d--------------~dGL~~~~-g~------~d~t 105 (314)
|.-...|-..|-||+.|||.+-+.+-| .+++.+++-... .+.. .|-|...+ |. +-++
T Consensus 135 DSLCYPiqLAYl~wk~Tg~t~~Fde~f~~a~~~il~~~~~eQ~h~~~spY~F~R~t~r~~dTL~~~G~G~~~a~tGM~wS 214 (434)
T COG3538 135 DSLCYPIQLAYLYWKATGDTSQFDEDFRQAVETILRVWKVEQDHETDSPYRFERDTDRKSDTLGRAGKGAPTAPTGMTWS 214 (434)
T ss_pred cchhhHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHhHhhccCCCCCeeeeccccccchhhhhCCCCCCcCcccceec
Confidence 444456778899999999988766554 456666664422 1111 12222211 10 0111
Q ss_pred --------------HhHHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHhCcC-----cceeeecCCCC--
Q psy5277 106 --------------AYCGGLHIAALACMVEMSS-LLNDTQQQQQFSAKLTKASQVYHDLLWT-----GSYYKFDSSQS-- 163 (314)
Q Consensus 106 --------------~~~~al~y~AL~~~a~lA~-~lG~~~~a~~~~~~a~~~k~~~~~~lW~-----~~~~~~d~~~~-- 163 (314)
+=.|..-.--|..+.+|.. ..++.+.+++.+++++++++.+.+.--. |+.|.|+..+.
T Consensus 215 gFRPSDDAC~YgYliPsNmFaVVvl~y~~ei~~~~~~~~~~a~~a~~L~~eIq~Gi~~~g~~~~~~~~~iyAyEVDG~Gn 294 (434)
T COG3538 215 GFRPSDDACEYGYLIPSNMFAVVVLSYLQEILEALPHDAEIARQAKELANEIQQGIEQFGKMDHPKGGEIYAYEVDGLGN 294 (434)
T ss_pred CcCCCccchhcccccccchhhhhhHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHhceecCCCCCeeEEEEecCCCc
Confidence 1124433445666677766 5677888999999999999999976542 45667655432
Q ss_pred C--CCCccccccccchhhhhhcCCCCCCCCChHHHHHHHHHHHhhccCCc-CCCccccccCCCCCCCCCCCCCCCCCCCc
Q psy5277 164 R--HSDSIMADQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGF-EAGSMGAVNGMKPNGDRDRSAIQSEEVWT 240 (314)
Q Consensus 164 ~--~~~~~~~~ql~gq~~~~~lgl~~~~il~~e~~~~~l~~v~~~~~~~~-~gG~~G~~~~~~p~g~~~~~~~~~g~vW~ 240 (314)
+ .|+...|+-|. +..+|. --.+++.-...-+.+.+... +| -.|.+- .| -|++..+ .+.|||
T Consensus 295 ~l~MDDaNvPSLLa----~PYLG~---c~~dDpvY~~TRk~iLS~eN-PYy~eG~~a--~G---iGSpHTp---~~yvWp 358 (434)
T COG3538 295 QLFMDDANVPSLLA----APYLGF---CEKDDPVYQNTRKTILSSEN-PYYYEGKYA--SG---IGSPHTP---DHYVWP 358 (434)
T ss_pred eeeccCCCchhhhh----hhhhcc---ccCCCHHHHHHHHHHHhcCC-Cceecceee--cc---CCCCCCC---Ccccch
Confidence 1 24444444333 233432 23456655666666655321 32 111110 01 1333221 246999
Q ss_pred cHHHHHHHHHHHCCC----hHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCCCchhhhHHHH
Q psy5277 241 GVTYLLSAAMLYEGN----VDEAWTTAGGLYRTVYERTGLGFETPEGLTGDKTYRSGGYMRALAVYA 303 (314)
Q Consensus 241 ~~~~~lA~~~~~~G~----~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~g~~~~~~Y~r~~~~w~ 303 (314)
.- ++..|. ..+=++++..+...- -| .+-+=|.|+.+.- ..|.|+-=+|+
T Consensus 359 ia-------LaiqgLTa~D~~ek~~iL~~L~~td---aG-Tg~MHE~f~vd~P---~~fTR~WFsWA 411 (434)
T COG3538 359 IA-------LAIQGLTANDDSEKKEILDMLKATD---AG-TGLMHEGFDVDDP---EQFTREWFSWA 411 (434)
T ss_pred HH-------HHHhhcccCChHHHHHHHHHHHhcc---CC-ccceecccCCCCH---HHhhhHHHHHH
Confidence 33 222243 344444544433221 23 4557799988832 38999998996
No 31
>PF03632 Glyco_hydro_65m: Glycosyl hydrolase family 65 central catalytic domain; InterPro: IPR005195 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) which contains this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The central domain is the catalytic domain, which binds a phosphate ion that is proximal the the highly conserved Glu. The arrangement of the phosphate and the glutamate is thought to cause nucelophilic attack on the anomeric carbon atom []. The catalytic domain also forms the majority of the dimerisation interface.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=96.13 E-value=0.008 Score=57.58 Aligned_cols=138 Identities=19% Similarity=0.158 Sum_probs=76.7
Q ss_pred hHHHHHHhhhhcccc--------cccCC-CCCCcccCCC-c-cccccCCccccc----ChhHHHHHHHHHHHhCCHHHHH
Q psy5277 8 GEVKFRSAANTHERY--------YTRWF-PEEEPFSLIN-G-YNVFDVSDWKDL----NLKFIVSIYRDYALHKDIRFLT 72 (314)
Q Consensus 8 ~~~~~~~~~~~~~~~--------~~~g~-p~~~p~~~~~-~-y~~~D~~~w~D~----~~~fi~~~~~y~~~TgD~~fl~ 72 (314)
+.+.++++|..=.+- .+.|. =..+||.-.. + -.+. ...-.+. +.-..+++++||..|||.+|++
T Consensus 50 ~Pe~Ar~lL~YR~~~L~~Ar~~A~~~g~~GA~yPWeS~~~G~E~t~-~~~~~~~e~Hi~adIa~a~~~Y~~~TgD~~~l~ 128 (370)
T PF03632_consen 50 HPEAARSLLNYRYRTLPQARENAREYGYKGAMYPWESARTGEECTG-PWPAGDYEIHINADIAYAIWQYYQATGDEEFLR 128 (370)
T ss_dssp -HHHHHHHHHHHHTTHHHHHHHHHCTT--S----SSBSS-SSB-----HHHHTT-THHHHHHHHHHHHHHHHH---TTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceeecccccCccccCC-CCCchHhhhcchHHHHHHHHHHHHhCCcHHHHH
Confidence 567777777622211 14566 3478884221 1 1111 0000111 2335889999999999999998
Q ss_pred HH-HHHHHHHHHHHHh---hCCCCCccccc---CCC------CchHHhHHHHHHHHHHHHHHHHHHcCCc------HHHH
Q psy5277 73 RV-YPTCLELIRKCES---FDKQGLGIVQN---GGF------PDQTAYCGGLHIAALACMVEMSSLLNDT------QQQQ 133 (314)
Q Consensus 73 ~~-~p~vk~al~~~~~---~d~d~dGL~~~---~g~------~d~t~~~~al~y~AL~~~a~lA~~lG~~------~~a~ 133 (314)
+. +|.+..+.+|..+ ++. .+|.-+- .|+ .++.+|+|.+.-..|+.++++++.+++. ++.+
T Consensus 129 ~~g~eil~etArfw~sr~~~~~-~~g~y~i~~V~GPDEY~~~V~NnayTN~ma~~~L~~A~~~~~~~~~~~l~~~~~e~~ 207 (370)
T PF03632_consen 129 EYGAEILFETARFWASRVEYNE-DTGRYEIRNVTGPDEYHENVDNNAYTNAMAKWNLRLAAEAAERLGEEKLGLTEEEPE 207 (370)
T ss_dssp THHHHHHHHHHHHHHHH-EEET-TTTEEE--SB--SSTTS-SBS--HHHHHHHHHHHHHHHHHHTTS-HHHHT--HHHHH
T ss_pred ccCHHHHHHHHHHHHHheEEcC-CCCeEEecccCchhcccCCCCCcHHHHHHHHHHHHHHHHHHHHCchhhcCCCHHHHH
Confidence 74 9999999999987 322 2243321 121 2233899999999999999999999976 3456
Q ss_pred HHHHHHHHHHHHHH
Q psy5277 134 QFSAKLTKASQVYH 147 (314)
Q Consensus 134 ~~~~~a~~~k~~~~ 147 (314)
+|++.++++.--++
T Consensus 208 ~W~~ia~~i~lP~d 221 (370)
T PF03632_consen 208 KWKEIADKIYLPYD 221 (370)
T ss_dssp HHHHHHHTB---EE
T ss_pred HHHHHHhcCCcCcC
Confidence 77777666654443
No 32
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=95.76 E-value=1.3 Score=42.23 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=66.6
Q ss_pred cccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhCCCCC--ccccc---CC-CCchH--HhHHHHHHHHHHHH
Q psy5277 48 KDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFDKQGL--GIVQN---GG-FPDQT--AYCGGLHIAALACM 119 (314)
Q Consensus 48 ~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~d~d~d--GL~~~---~g-~~d~t--~~~~al~y~AL~~~ 119 (314)
.-.+.-.|.++..+++.+||.++++ ..+++++|+.++..|++ |+... .| +.+.+ .+..+ ..+.++
T Consensus 52 ~~~~ar~i~~~a~a~~~~~~~~~l~----~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a---~~l~al 124 (384)
T cd00249 52 LWLQARQVYCFAVAYLLGWRPEWLE----AAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHA---FALLAA 124 (384)
T ss_pred EEEecHHHHHHHHHHHhcCChhHHH----HHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHH---HHHHHH
Confidence 4455667889999999999988764 67899999988544543 45442 22 11221 34444 445666
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcC--ccee
Q psy5277 120 VEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWT--GSYY 156 (314)
Q Consensus 120 a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~--~~~~ 156 (314)
+++.+..|++ +|.+.|+++.+.+.++||+ +.++
T Consensus 125 a~~~~at~d~----~~l~~A~~~~~~l~~~~~~~~g~~~ 159 (384)
T cd00249 125 AQAAKVGGDP----EARALAEETIDLLERRFWEDHPGAF 159 (384)
T ss_pred HHHHHhcCCH----HHHHHHHHHHHHHHHHhccCCCccc
Confidence 7777777775 6888899999999999993 3444
No 33
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=95.28 E-value=1.8 Score=41.20 Aligned_cols=92 Identities=9% Similarity=-0.025 Sum_probs=54.9
Q ss_pred cChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhCCCCCc-ccccCC---CCchHHhHHHHHHHHHHHHHHHHHH
Q psy5277 50 LNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFDKQGLG-IVQNGG---FPDQTAYCGGLHIAALACMVEMSSL 125 (314)
Q Consensus 50 ~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~d~d~dG-L~~~~g---~~d~t~~~~al~y~AL~~~a~lA~~ 125 (314)
+....+.++-++|+.|||.++++ .++++++++.++-.+++| +..... .........+ .-+.++.++++.
T Consensus 116 ~~a~~l~ala~~~~at~d~~~l~----~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---h~~~all~l~~~ 188 (384)
T cd00249 116 SHAFALLAAAQAAKVGGDPEARA----LAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHM---HLLEAMLAAYEA 188 (384)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHH----HHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhH---HHHHHHHHHHHH
Confidence 44567888889999999998886 456666666653222233 321110 0001011111 112345556666
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHhCcC
Q psy5277 126 LNDTQQQQQFSAKLTKASQVYHDLLWT 152 (314)
Q Consensus 126 lG~~~~a~~~~~~a~~~k~~~~~~lW~ 152 (314)
.|++ +|.+.|+++-+.+.+++++
T Consensus 189 tgd~----~~~~~A~~l~~~~~~~~~~ 211 (384)
T cd00249 189 TGEQ----KYLDRADEIADLILDRFID 211 (384)
T ss_pred hCCH----HHHHHHHHHHHHHHHHhcC
Confidence 7754 6888899999999999996
No 34
>KOG4125|consensus
Probab=93.18 E-value=0.22 Score=48.22 Aligned_cols=136 Identities=11% Similarity=0.097 Sum_probs=92.4
Q ss_pred hhHHHHHHhhhhccccccc--------CCC-CCCcccCCC---ccccccCCcc----cccChhHHHHHHHHHHHhCCHHH
Q psy5277 7 MGEVKFRSAANTHERYYTR--------WFP-EEEPFSLIN---GYNVFDVSDW----KDLNLKFIVSIYRDYALHKDIRF 70 (314)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~--------g~p-~~~p~~~~~---~y~~~D~~~w----~D~~~~fi~~~~~y~~~TgD~~f 70 (314)
.+.+.++.||+.-+|..+. |-| ..|||.... +-.+. ..+ ...++--.+++..||..+.|.+|
T Consensus 312 F~p~~A~~~L~YR~RtL~~Ak~nA~~~GY~GA~FpWESA~~G~EV~~e--~~~~~QE~Hin~dv~~Af~~y~h~~~D~e~ 389 (682)
T KOG4125|consen 312 FFPNVAQNMLNYRNRTLSQAKLNAEKYGYPGAIFPWESAKYGNEVSTE--GPCVDQEYHINVDVAMAFSIYLHEGIDDEY 389 (682)
T ss_pred cCHHHHHHHHHhhhhhHHHHHhhHHhcCCCCccccccccccccccCCC--CCceeEEEEecHHHHHHHHHHHHhccchhh
Confidence 4677888898887777643 443 368884211 11111 111 12245578888999999999998
Q ss_pred HHH-HHHHHHHHHHHHHh---hCCCCCccc---ccCCC------CchHHhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy5277 71 LTR-VYPTCLELIRKCES---FDKQGLGIV---QNGGF------PDQTAYCGGLHIAALACMVEMSSLLNDTQQQQQFSA 137 (314)
Q Consensus 71 l~~-~~p~vk~al~~~~~---~d~d~dGL~---~~~g~------~d~t~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~ 137 (314)
++- -||.++...+|..+ ++ +..++- ...++ .+..+|+|++.-.+|+.|+.||..+|.+. ..+|++
T Consensus 390 ~~~t~Wpi~~~VA~F~~SRv~~~-~s~~~yHL~nVM~PDE~H~~VNn~VYTNa~~k~~L~FA~~LA~hlG~~~-~~kW~e 467 (682)
T KOG4125|consen 390 LRYTTWPIIKNVAQFFTSRVKYN-SSLGLYHLYNVMDPDEFHNHVNNGVYTNAGIKTLLKFATDLANHLGEVV-DPKWSE 467 (682)
T ss_pred hccCCchhHHHHHHHhhheeEec-CccceeeeeccCCchhcccccccchhhhHHHHHHHHHHHHHHHhhCCcc-ChhHHH
Confidence 865 89999999999977 32 222221 11111 12239999999999999999999999764 579999
Q ss_pred HHHHHHHHH
Q psy5277 138 KLTKASQVY 146 (314)
Q Consensus 138 ~a~~~k~~~ 146 (314)
.++.++--+
T Consensus 468 VsD~i~ipr 476 (682)
T KOG4125|consen 468 VSDDIYIPR 476 (682)
T ss_pred hccCceecc
Confidence 888776443
No 35
>PRK13807 maltose phosphorylase; Provisional
Probab=92.58 E-value=0.71 Score=48.44 Aligned_cols=96 Identities=14% Similarity=0.083 Sum_probs=65.5
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHhhC--CCCCccccc---CCC------CchHHhHHHHHHHHHHH
Q psy5277 51 NLKFIVSIYRDYALHKDIRFLTR-VYPTCLELIRKCESFD--KQGLGIVQN---GGF------PDQTAYCGGLHIAALAC 118 (314)
Q Consensus 51 ~~~fi~~~~~y~~~TgD~~fl~~-~~p~vk~al~~~~~~d--~d~dGL~~~---~g~------~d~t~~~~al~y~AL~~ 118 (314)
+.-..+++++||..|||.+|+++ -+|.+.....|..+.- .+.+|.-.. .|+ .|+.+|+|.+--..|+.
T Consensus 427 ~adIaya~~~Y~~~TgD~~fl~~~G~e~l~etArfw~s~~~~~~~~~~y~I~~V~GPDEY~~~vdNNayTN~ma~~~l~~ 506 (756)
T PRK13807 427 NGAIAYAIYNYTNYTGDESYLKEEGLEVLVEIARFWADRVHFSKRKNKYMIHGVTGPNEYENNVNNNWYTNYIAAWTLEY 506 (756)
T ss_pred hHHHHHHHHHHHHHhCCHHHHHhcCHHHHHHHHHHHHHheEEeCCCCeEEECCcccccccCCCCCCchhHHHHHHHHHHH
Confidence 45578999999999999999977 6899999999987721 122333221 121 22338999999999999
Q ss_pred HHHHHHHcCCc---------HHHHHHHHHHHHHHHHH
Q psy5277 119 MVEMSSLLNDT---------QQQQQFSAKLTKASQVY 146 (314)
Q Consensus 119 ~a~lA~~lG~~---------~~a~~~~~~a~~~k~~~ 146 (314)
+.++++.+++. ++.++|++.++++.--+
T Consensus 507 A~~~~~~l~~~~~~~l~~~~~e~~~w~~ia~~~~lp~ 543 (756)
T PRK13807 507 TLENLDKVKKEAPARLNVTEEELAKWQDIVDKMYLPY 543 (756)
T ss_pred HHHHHHHhchhhHHHhcCCHHHHHHHHHHHhCeEecc
Confidence 99999877543 12345555555554433
No 36
>PF08760 DUF1793: Domain of unknown function (DUF1793); InterPro: IPR014870 This domain is found at the C terminus of a glutaminase protein from fungi []. It is also found as a single domain protein in Bacteroides thetaiotaomicron.
Probab=91.38 E-value=8.3 Score=32.87 Aligned_cols=73 Identities=19% Similarity=0.364 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCc--Ccceee--ecCCCCCCCCccccccccchhhhhhcCCCCCCC
Q psy5277 115 ALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLW--TGSYYK--FDSSQSRHSDSIMADQLCGYLFLKASGVNTEAI 190 (314)
Q Consensus 115 AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW--~~~~~~--~d~~~~~~~~~~~~~ql~gq~~~~~lgl~~~~i 190 (314)
++.+|++||+.+|+.+++++|.+.|+...+...+.-. ++..|. ||..+ .-+. ...-.+=.+||| ++
T Consensus 2 Gi~A~s~ia~~~G~~~~a~~Y~~~A~~~a~~W~~~a~~~~g~H~~L~Y~~~~----sWsl---~YNL~~DkLLgl---~l 71 (171)
T PF08760_consen 2 GIGAMSEIASMLGHTEDAANYSDIAKSYASQWQTLAISTDGDHYTLAYDDPG----SWSL---KYNLYWDKLLGL---NL 71 (171)
T ss_pred hHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhhccCCCCeEEeecCCCC----Cccc---ccchHHHHhcCc---CC
Confidence 6899999999999999999999999999888887777 455555 54321 1112 222223456777 68
Q ss_pred CChHHHH
Q psy5277 191 FPSANIA 197 (314)
Q Consensus 191 l~~e~~~ 197 (314)
+|++...
T Consensus 72 fp~~Vy~ 78 (171)
T PF08760_consen 72 FPESVYD 78 (171)
T ss_pred CcHHHHH
Confidence 8765444
No 37
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=89.97 E-value=1.6 Score=41.89 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=59.5
Q ss_pred cChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh-hCCC-CCcccccCC-------CCc--hHHhHHHHHHHHHHH
Q psy5277 50 LNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCES-FDKQ-GLGIVQNGG-------FPD--QTAYCGGLHIAALAC 118 (314)
Q Consensus 50 ~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~-~d~d-~dGL~~~~g-------~~d--~t~~~~al~y~AL~~ 118 (314)
.+-.++....+.|+.|||...| ...+++.+|+.+ .-.| ++|++..+- ..+ ..+|.+++++.++
T Consensus 156 sN~~~~~laarL~~~t~~~~Yl----~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~-- 229 (370)
T PF03663_consen 156 SNGPAAQLAARLYRITGDQTYL----DWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAA-- 229 (370)
T ss_dssp HHHHHHHHHHHHHHHH--HHHH----HHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHH--
T ss_pred chHHHHHHHHHHHHhcCChHHH----HHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHH--
Confidence 4566888888899999998655 578999999987 3343 458876321 011 1279999886555
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCc
Q psy5277 119 MVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTG 153 (314)
Q Consensus 119 ~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~ 153 (314)
+.|.+.-+++ +.|.+.|+++.++..+.|++.
T Consensus 230 -~~Ly~~T~~~---~~yl~~A~~la~~~~~~~~~~ 260 (370)
T PF03663_consen 230 -AYLYNATNDE---QTYLDRAEKLADAAINHFFDN 260 (370)
T ss_dssp -HHHHHHH--H----HHHHHHHHHHHHHHHHHEET
T ss_pred -HHHHHhcCCc---cHHHHHHHHHHHHHHHHhCCC
Confidence 4455555433 389999999999987777753
No 38
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.24 E-value=6.1 Score=40.59 Aligned_cols=103 Identities=12% Similarity=0.079 Sum_probs=66.6
Q ss_pred cCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhCCCCCccccc--CCCCchH--HhHHHHHHHHHHH
Q psy5277 43 DVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFDKQGLGIVQN--GGFPDQT--AYCGGLHIAALAC 118 (314)
Q Consensus 43 D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~d~d~dGL~~~--~g~~d~t--~~~~al~y~AL~~ 118 (314)
|..--.|-|-+.|.++..-.+.+||.++++ ..+++.+|+.+.-.++ .|... .|...-. .+-=+ ....+
T Consensus 405 Ddkvlt~wNglmi~aLa~a~~~~~d~~~l~----~A~~~~~fi~~~l~~~-rl~~~~~~G~a~~~g~leDYA---~~i~g 476 (667)
T COG1331 405 DDKVLTDWNGLMIAALAEAGRVLGDPEYLE----AAERAADFILDNLYVD-RLLRRYRGGEAAVAGLLEDYA---FLILG 476 (667)
T ss_pred CcceeeccHHHHHHHHHHHHHHcCChHHHH----HHHHHHHHHHHhhccc-chheeeecCcccccccchhHH---HHHHH
Confidence 444446667889999999999999998886 6789999987732222 33331 1111000 12222 22344
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCcc--eee
Q psy5277 119 MVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTGS--YYK 157 (314)
Q Consensus 119 ~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~~--~~~ 157 (314)
++.+-+..++. +|-+.|.++.+.+.+.|||++ ||.
T Consensus 477 ll~lye~t~d~----~yL~~A~~L~~~~i~~f~d~~gGf~~ 513 (667)
T COG1331 477 LLALYEATGDL----AYLEKAIELADEAIADFWDDEGGFYD 513 (667)
T ss_pred HHHHHHhhCcH----HHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 45555555554 788899999999999999844 665
No 39
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=86.50 E-value=2 Score=39.24 Aligned_cols=108 Identities=13% Similarity=0.153 Sum_probs=63.9
Q ss_pred CCCCcccC-CCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhCCCCCcccccC------C
Q psy5277 28 PEEEPFSL-INGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFDKQGLGIVQNG------G 100 (314)
Q Consensus 28 p~~~p~~~-~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~d~d~dGL~~~~------g 100 (314)
-.-+||.. .--||..-... ++|...+++... -+...-..+..||+.+.-+|+|||+..+ |
T Consensus 133 gGg~pWR~q~~f~N~P~NgP-------a~I~~ar~~~~~------~krL~~AMK~~dWi~~~Lid~DGlV~DGi~~ledG 199 (377)
T COG4833 133 GGGIPWRKQDQFFNAPANGP-------AGIFLARYPDQY------GKRLKRAMKMADWIDRTLIDPDGLVFDGIKALEDG 199 (377)
T ss_pred CCcccccccceeecCCCCCc-------ceEEEeechHHH------HHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccC
Confidence 34677854 33444433222 555555554332 1223344567788888667899999843 2
Q ss_pred CCc---hHHhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcC
Q psy5277 101 FPD---QTAYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWT 152 (314)
Q Consensus 101 ~~d---~t~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~ 152 (314)
..+ +-+|||+.++. |.+..+|-+ |... -++|-..+.++.++.++++=+
T Consensus 200 t~lvr~~~tYcQGV~IG-le~~L~Lr~--~~a~-~A~Y~a~~h~~vaav~~~mT~ 250 (377)
T COG4833 200 TSLVRAQYTYCQGVVIG-LETELALRT--GPAA-RARYCARVHRLVAAVNEHMTP 250 (377)
T ss_pred chhheeeccccceeEee-chhhhhhhc--CchH-HHHHHHHHHHHHHHHHHhcCc
Confidence 111 01789888766 555555543 4443 356888888899999988765
No 40
>COG3537 Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]
Probab=84.66 E-value=26 Score=35.96 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=35.1
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCCCchhhhHHHHHHHHH
Q psy5277 247 SAAMLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGDKTYRSGGYMRALAVYAMQDAY 308 (314)
Q Consensus 247 A~~~~~~G~~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~g~~~~~~Y~r~~~~w~~~~al 308 (314)
...+.+.|..++.-++++.+.+.. |+. .|+.+-|+.. ..+||+|-|..||
T Consensus 614 PyLy~yiG~pd~T~~~v~~l~~k~---f~~---s~~gyPGneD------~GaMSsWyVwsAL 663 (768)
T COG3537 614 PYLYNYIGQPDKTQRLVRRLRRKH---FHP---SPDGYPGNED------AGAMSSWYVWSAL 663 (768)
T ss_pred hhHHHhcCCchhHHHHHHHHHHHh---cCC---CCCCCCCCcc------cchHHHHHHHHhc
Confidence 345666799999999877776444 442 5666666632 2389999999988
No 41
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=80.35 E-value=12 Score=35.11 Aligned_cols=92 Identities=11% Similarity=0.022 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhCCCC-CcccccCCCCchHH--hHHHHHHHHHHHHHHHHHHcCC
Q psy5277 52 LKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFDKQG-LGIVQNGGFPDQTA--YCGGLHIAALACMVEMSSLLND 128 (314)
Q Consensus 52 ~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~d~d~-dGL~~~~g~~d~t~--~~~al~y~AL~~~a~lA~~lG~ 128 (314)
.+.++++.. +..|||.+.++ .++++++++.++-.|+ .|+....-..+.+. ..|. ....+.++..+++..|+
T Consensus 84 af~l~ala~-~~~tg~~~~~~----~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~-~mhl~eA~l~l~~~~~~ 157 (346)
T PF07221_consen 84 AFALLALAE-ARATGDPEALE----LAEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNP-HMHLLEAFLALYEATGD 157 (346)
T ss_dssp HHHHHHHHH-HHCTT-TTHHH----HHHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHhCChhHHH----HHHHHHHHHHHHhcccccCcceeccCCccccCCCCCh-hHHHHHHHHHHHHhccC
Confidence 345666677 88999987654 5577888877732232 35543221112111 1222 12444555666666654
Q ss_pred cHHHHHHHHHHHHHHHHHHHhCcCc
Q psy5277 129 TQQQQQFSAKLTKASQVYHDLLWTG 153 (314)
Q Consensus 129 ~~~a~~~~~~a~~~k~~~~~~lW~~ 153 (314)
.+|.+.++++.+.|..+|++.
T Consensus 158 ----~~~~~~a~~l~~~~~~~f~~~ 178 (346)
T PF07221_consen 158 ----PRYLDRAEELLDLFLDRFADP 178 (346)
T ss_dssp ----HHHHHHHHHHHHHHHTTCHHC
T ss_pred ----HHHHHHHHHHHHHHHHHHHHh
Confidence 468899999999999899963
No 42
>COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]
Probab=80.00 E-value=13 Score=38.87 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHh--hCCCCCcccccC---CC------CchHHhHHHHHHHHHHHH
Q psy5277 52 LKFIVSIYRDYALHKDIRFLTRV-YPTCLELIRKCES--FDKQGLGIVQNG---GF------PDQTAYCGGLHIAALACM 119 (314)
Q Consensus 52 ~~fi~~~~~y~~~TgD~~fl~~~-~p~vk~al~~~~~--~d~d~dGL~~~~---g~------~d~t~~~~al~y~AL~~~ 119 (314)
.-.-+++|.|++.|||.+|++++ ++.+..+..|-.+ +-.+.+|.-... |+ .++.+|+|.+--.-|+-+
T Consensus 437 ~dIAyAv~~Y~q~TgD~~yl~~~G~evl~etArFW~srv~~~~~~~~y~I~gV~GPdEY~~~InNN~fTN~ma~w~L~~a 516 (772)
T COG1554 437 ADIAYAVWNYWQVTGDDSYLADCGLEVLLETARFWASRVHFSDRNGRYEIHGVTGPDEYHNHVNNNAFTNLMAAWNLEYA 516 (772)
T ss_pred hHHHHHHHHHHhhcCcHHHHHhcCHHHHHHHHHHHHHHheecccCCeEEEecCcCchhhhccccchHHHHHHHHHHHHHH
Confidence 34678999999999999999874 6888888877765 211233443321 21 112278888777777777
Q ss_pred HHHHHHc
Q psy5277 120 VEMSSLL 126 (314)
Q Consensus 120 a~lA~~l 126 (314)
.++++.+
T Consensus 517 le~~~~~ 523 (772)
T COG1554 517 LEILEWL 523 (772)
T ss_pred HHHHHHH
Confidence 7777753
No 43
>PF07971 Glyco_hydro_92: Glycosyl hydrolase family 92; InterPro: IPR012939 This domain occurs within alpha-1,2-mannosidases, which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation [].; PDB: 2WW2_C 2WVY_B 2WVZ_B 2WW0_H 2WZS_D 2WVX_B 2WW1_D 2WW3_C.
Probab=79.63 E-value=1.3 Score=44.19 Aligned_cols=259 Identities=11% Similarity=0.082 Sum_probs=109.7
Q ss_pred hhHHHHHHhhhhccccccc-CC-CCCCcccCCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy5277 7 MGEVKFRSAANTHERYYTR-WF-PEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRK 84 (314)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-g~-p~~~p~~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~ 84 (314)
+..++..++++.+.+..+. |. |. |...+.+... .-.++.-++.+..|.+--.|.+ +++.|..|++...-
T Consensus 131 ~~P~~~~d~v~Slv~~~~~~G~lP~---w~~~~~~~~~-----M~G~~a~~viadA~~kG~~~~D-~~~A~~am~~~a~~ 201 (502)
T PF07971_consen 131 LAPERASDMVQSLVNMYRQGGWLPR---WPSPGNETGC-----MIGDHADPVIADAYAKGIRGFD-WEEAYEAMKKNATV 201 (502)
T ss_dssp H-HHHHHHHHHHHHHHHHHHSS--S---EESSSB---------S-S-THHHHHHHHHHTT---S--HHHHHHHHHHHHC-
T ss_pred hChHHHHHHHHHHHHHHHHcCCCCc---ccCCCCccCc-----cCCcchHHHHHHHHHcCCCCcC-HHHHHHHHHHHhhc
Confidence 4567788888888887754 43 55 2221221110 1111113444444544322333 56677777766651
Q ss_pred HHh-h-CCCCCcc--------ccc-CCCCchHHhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCc
Q psy5277 85 CES-F-DKQGLGI--------VQN-GGFPDQTAYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTG 153 (314)
Q Consensus 85 ~~~-~-d~d~dGL--------~~~-~g~~d~t~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~ 153 (314)
--. . .....|+ +-. .+....++-..-=+...=-|.+++|+.||+++++++|.+++.-=| .+||.
T Consensus 202 ~~~~~~~~gr~~~~~y~~~GYvp~~~~~~~~svS~TLEyay~D~~iA~~A~~LG~~~~~~~~~~Rs~ny~-----n~fd~ 276 (502)
T PF07971_consen 202 PPPNWSYEGRGGLDDYLKLGYVPASDDKHGESVSRTLEYAYDDWAIAQMAKALGKKEDADKFLKRSQNYR-----NVFDP 276 (502)
T ss_dssp B-SS-TTTBTTTHHHHHHHSS---TTTTSTTHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHCCGGGGG-----GGEET
T ss_pred CCCcccccCCcchhHHHhCCceecccccCCccHhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-----HHcCC
Confidence 000 0 0011122 210 000112222222244556789999999999988888887665433 35553
Q ss_pred c--eee-----------ecCCCCCCCCccccccccchhhhhhcCCCCCCC------C-ChHHHHHHHHHHHhhccCCcCC
Q psy5277 154 S--YYK-----------FDSSQSRHSDSIMADQLCGYLFLKASGVNTEAI------F-PSANIARALATIFSTNVRGFEA 213 (314)
Q Consensus 154 ~--~~~-----------~d~~~~~~~~~~~~~ql~gq~~~~~lgl~~~~i------l-~~e~~~~~l~~v~~~~~~~~~g 213 (314)
+ |++ ||.... ..-..+...|.-|-..+.+| +++ + -+++..+-|+..+...... ..
T Consensus 277 ~tgf~~pr~~dG~w~~~fdp~~~---~~~~~~f~EgnawqY~w~vp-hD~~gLi~lmGG~~~f~~rLd~~F~~~~~~-~~ 351 (502)
T PF07971_consen 277 ETGFFRPRNADGSWIEPFDPFYG---CHWGDGFYEGNAWQYSWFVP-HDVAGLIELMGGKEAFVARLDAFFTEPNPF-SY 351 (502)
T ss_dssp TTTCE--B-TTS-B-SS--TT------B-STTSSSS-HHHHTT--T-T-HHHHHHHCTSHHHHHHHHHHHCHS---T-CG
T ss_pred ccCCccccCCCCCCCCCCCcccc---ccCCCceEecCcceeEecCc-cCHHHHHHHhCCHHHHHHHHHHHhCCCccc-Cc
Confidence 2 222 222100 00001111111111111111 111 1 2567777777776642211 00
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCC
Q psy5277 214 GSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGDKTYRSG 293 (314)
Q Consensus 214 G~~G~~~~~~p~g~~~~~~~~~g~vW~~~~~~lA~~~~~~G~~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~g~~~~~ 293 (314)
+..+ .|.+. ...|.+||=.++.| .+-..|...+.-++++.+++.. |+ ..|-++.||..
T Consensus 352 ~~~~-------~g~~g-~y~~gNEPs~h~py----lyn~~g~P~kTq~~vr~i~~~~---y~---~~p~G~pGndD---- 409 (502)
T PF07971_consen 352 GPYG-------TGNIG-QYAHGNEPSHHIPY----LYNYAGQPWKTQEWVRRILDEL---YS---NTPDGLPGNDD---- 409 (502)
T ss_dssp CCCC-------HCCCT-TS-TTSGGGTTGGG----GGGGCT-HHHHHHHHHHHHHHS---B----SSTT-CSSTTT----
T ss_pred cccc-------ccccc-cccCCCCccccchh----HHHhCCChHHHHHHHHHHHHHH---hC---CccCCCCCCcc----
Confidence 0001 11111 11122232222222 2334488888888877777665 33 46777776622
Q ss_pred CchhhhHHHHHHHHH
Q psy5277 294 GYMRALAVYAMQDAY 308 (314)
Q Consensus 294 ~Y~r~~~~w~~~~al 308 (314)
.-.||+|-|..||
T Consensus 410 --~G~MSaWyV~sal 422 (502)
T PF07971_consen 410 --CGQMSAWYVFSAL 422 (502)
T ss_dssp --TTCCHHHHHHHHH
T ss_pred --cchHHHHHHHHHc
Confidence 2379999999887
No 44
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=77.15 E-value=7.9 Score=37.08 Aligned_cols=103 Identities=21% Similarity=0.246 Sum_probs=63.0
Q ss_pred cccccChhHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHHHh-hCCC--CCcccccC-----CC-CchHHhHHHH
Q psy5277 46 DWKDLNLKFIVSIYRDYALHKDI-----RFLTRVYPTCLELIRKCES-FDKQ--GLGIVQNG-----GF-PDQTAYCGGL 111 (314)
Q Consensus 46 ~w~D~~~~fi~~~~~y~~~TgD~-----~fl~~~~p~vk~al~~~~~-~d~d--~dGL~~~~-----g~-~d~t~~~~al 111 (314)
.+.|++.|+.+++-+-|+.|||. ++|+ ..+++.+++.. +|.+ +-|+.... +. ... +-.|++
T Consensus 85 ~~~DD~aw~~la~l~aye~t~~~~~~~~~yL~----~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~~~~~Kn-a~sN~~ 159 (370)
T PF03663_consen 85 RYYDDNAWWALALLRAYELTGDQPSDNPKYLD----LAKEIFDFLISGWDDTSCGGGIWWSIDDTNSGYDYKN-AISNGP 159 (370)
T ss_dssp -BHHHHHHHHHHHHHHHHHH--H-----HHHH----HHHHHHHHHHHTB-SGG-GS-BEEET----TEEEEEE-HHHHHH
T ss_pred CccChHHHHHHHHHHHHHhhCCCcchHHHHHH----HHHHHHHHHHHhcCCccCCCCccccccccCCCCCccc-ccchHH
Confidence 46888888999999999999999 7775 66777887765 5433 13554431 10 011 455554
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH-hCcCcc-eeeecC
Q psy5277 112 HIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHD-LLWTGS-YYKFDS 160 (314)
Q Consensus 112 ~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~-~lW~~~-~~~~d~ 160 (314)
. +..+++|++..|++ .|.+.|+++-+=+.+ .|.|+. +..+|.
T Consensus 160 ~---~~laarL~~~t~~~----~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg 203 (370)
T PF03663_consen 160 A---AQLAARLYRITGDQ----TYLDWAKKIYDWMRDSGLIDPSTGLVYDG 203 (370)
T ss_dssp H---HHHHHHHHHHH--H----HHHHHHHHHHHHHHH-HHB--TTS-B--E
T ss_pred H---HHHHHHHHHhcCCh----HHHHHHHHHHHHhhcceeEECCCcEEEeC
Confidence 3 45667777777654 599999999998888 898754 434443
No 45
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=76.75 E-value=16 Score=34.38 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhCCCC--Ccccc---cCCCCchH--HhHHHHHHHHHHHHHHHHHHcC
Q psy5277 55 IVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFDKQG--LGIVQ---NGGFPDQT--AYCGGLHIAALACMVEMSSLLN 127 (314)
Q Consensus 55 i~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~d~d~--dGL~~---~~g~~d~t--~~~~al~y~AL~~~a~lA~~lG 127 (314)
|++.-.-++ .|+.++++ .+++.++|+.++-.|+ .|+.. .+++.+.+ .|.++. ++.++++ +...|
T Consensus 27 ~~~fa~a~~-~g~~~~l~----~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af---~l~ala~-~~~tg 97 (346)
T PF07221_consen 27 LYTFARAYR-LGRPEYLE----LAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAF---ALLALAE-ARATG 97 (346)
T ss_dssp HHHHHHHHH-TTSHHHHH----HHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHH---HHHHHHH-HHCTT
T ss_pred HHHHHHHHh-cCchhHHH----HHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHH---HHHHHHH-HHHhC
Confidence 444444455 88888654 5899999998843332 34432 11211111 566653 4555566 67778
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhCcCcc
Q psy5277 128 DTQQQQQFSAKLTKASQVYHDLLWTGS 154 (314)
Q Consensus 128 ~~~~a~~~~~~a~~~k~~~~~~lW~~~ 154 (314)
++ ++.+.|+++.+.+++++|++.
T Consensus 98 ~~----~~~~~A~~~~~~l~~~~~d~~ 120 (346)
T PF07221_consen 98 DP----EALELAEQTLEFLERRFWDPE 120 (346)
T ss_dssp -T----THHHHHHHHHHHHHHHTEETT
T ss_pred Ch----hHHHHHHHHHHHHHHHhcccc
Confidence 76 457888899999999999854
No 46
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=75.08 E-value=72 Score=29.75 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=63.6
Q ss_pred cCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhCCCCCcccccC----CCC---c--hHHhHHHHHH
Q psy5277 43 DVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFDKQGLGIVQNG----GFP---D--QTAYCGGLHI 113 (314)
Q Consensus 43 D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~d~d~dGL~~~~----g~~---d--~t~~~~al~y 113 (314)
....|.|...--+..+..+.+.|||..++++....+....+++ +| .++||+.+. +.. + | +--|+...
T Consensus 118 ~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~--~d-~~tGl~~h~~~~~~~~~~s~~~W-sRG~gW~~ 193 (336)
T PF07470_consen 118 PNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYL--YD-PETGLYYHGYTYQGYADWSDSFW-SRGNGWAI 193 (336)
T ss_dssp TTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHH--B--TTTSSBESEEETTSSSTTST--B-HHHHHHHH
T ss_pred CCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhc--cC-CCCCceeeccCCCCCcCcccccC-cchhhHHH
Confidence 4456888754455666778999999999988877777777652 33 357988743 221 1 3 45577666
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcC
Q psy5277 114 AALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWT 152 (314)
Q Consensus 114 ~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~ 152 (314)
.++-.+.+.... +.+....+.+.++++.+.+. ++.+
T Consensus 194 ~Gl~~~l~~lp~--~~~~~~~~~~~~~~~~~~l~-~~q~ 229 (336)
T PF07470_consen 194 YGLAEVLEYLPE--DHPERDELLEIAKKLADALA-RYQD 229 (336)
T ss_dssp HHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHH-TTST
T ss_pred HHHHHHHHHhcc--hhhhHHHHHHHHHHHHHHHH-hcCC
Confidence 665444444322 23334667777777776655 4554
No 47
>PLN02567 alpha,alpha-trehalase
Probab=73.95 E-value=14 Score=37.50 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=40.8
Q ss_pred CCCCCC----CCCccHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy5277 231 SAIQSE----EVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGFETP 281 (314)
Q Consensus 231 ~~~~~g----~vW~~~~~~lA~~~~~~G~~~~A~~l~~~~~~~~~~~~g~~~~~P 281 (314)
|++.+| |+|=|++|+++.+++..|+.+.|..+++.++..+ +++|. +|
T Consensus 142 p~iVPGgRFrE~yyWDSy~i~~GLl~s~~~~~A~~mi~Nf~~~i-~~~Gf---IP 192 (554)
T PLN02567 142 PVVVPGSRFREVYYWDSYWVIRGLLASKMYETAKGVVENLLYLV-DTYGF---VP 192 (554)
T ss_pred CeEccCCCcCccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HHcCc---CC
Confidence 444554 8999999999999999999999999999999988 77886 66
No 48
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=69.34 E-value=43 Score=30.73 Aligned_cols=99 Identities=13% Similarity=0.086 Sum_probs=55.8
Q ss_pred CcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhh-CCCCCcccccCCC-CchHHhHHHHHHHHHHHHHHH
Q psy5277 45 SDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESF-DKQGLGIVQNGGF-PDQTAYCGGLHIAALACMVEM 122 (314)
Q Consensus 45 ~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~-d~d~dGL~~~~g~-~d~t~~~~al~y~AL~~~a~l 122 (314)
..+.+.....++++.+.|+.|+|.++++ ..++++++..+. ..+++|....... ......|.+.- ....+...+
T Consensus 135 ~G~~hG~aGi~~~L~~l~~~t~d~~~l~----~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~a-Gi~~~l~~l 209 (321)
T cd04791 135 HGLLHGWAGIALFLLRLYKATGDSRYLE----LAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSA-GLGLLMLRL 209 (321)
T ss_pred CccccCcHHHHHHHHHHHHHHCCHHHHH----HHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcH-HHHHHHHHH
Confidence 3567888889999999999999999886 445666665542 2233343321110 00001221100 111223345
Q ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhCcC
Q psy5277 123 SSLLNDTQQQQQFSAKLTKASQVYHDLLWT 152 (314)
Q Consensus 123 A~~lG~~~~a~~~~~~a~~~k~~~~~~lW~ 152 (314)
.+..+++ +|.+.++++.+.+.+.+|.
T Consensus 210 ~~~~~d~----~~~~~a~~~~~~~~~~~~~ 235 (321)
T cd04791 210 EAITGDK----RWRDEADGIAHAALSSCYA 235 (321)
T ss_pred HHhcCCH----HHHHHHHHHHHHHhhhhcc
Confidence 5666654 5777788887777766553
No 49
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=63.64 E-value=15 Score=20.55 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHCCChHHHHHHHH
Q psy5277 242 VTYLLSAAMLYEGNVDEAWTTAG 264 (314)
Q Consensus 242 ~~~~lA~~~~~~G~~~~A~~l~~ 264 (314)
..+.+|..+...|+.++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678888999999999998853
No 50
>PRK13272 treA trehalase; Provisional
Probab=61.12 E-value=42 Score=33.98 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHhhccCCcCCC-ccccccCCCCCCCCCCCCCCCC----CCCccHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy5277 193 SANIARALATIFSTNVRGFEAG-SMGAVNGMKPNGDRDRSAIQSE----EVWTGVTYLLSAAMLYEGNVDEAWTTAGGLY 267 (314)
Q Consensus 193 ~e~~~~~l~~v~~~~~~~~~gG-~~G~~~~~~p~g~~~~~~~~~g----~vW~~~~~~lA~~~~~~G~~~~A~~l~~~~~ 267 (314)
++..++.++.+|+.+..+.... ..+.... +..+++.+| |+.=|++|++..+++..|+.+.|+.+++.+.
T Consensus 117 d~~~~~~i~~lW~~L~R~~~~~~~~~Sli~------lp~p~iVPGGRFrE~YYWDSY~i~~GLl~s~~~~~a~~mi~Nf~ 190 (542)
T PRK13272 117 DTALREHIDALWPKLVRSQEQVPAHSSLLA------LPHPYVVPGGRFREVYYWDSYFTMLGLVKSGQTTLSRQMLDNFA 190 (542)
T ss_pred CHHHHHHHHHHHHHhccccCCCCCcCcccc------CCCCeeecCCCccchhhhHHHHHHHhhhhcCcHHHHHHHHHHHH
Confidence 4456678999988765543210 0000000 112344444 7888999999999999999999999999988
Q ss_pred HHHHHHhCC
Q psy5277 268 RTVYERTGL 276 (314)
Q Consensus 268 ~~~~~~~g~ 276 (314)
..+ +++|.
T Consensus 191 ~~i-~~yGf 198 (542)
T PRK13272 191 YLI-DTYGH 198 (542)
T ss_pred HHH-HHcCc
Confidence 888 88995
No 51
>PRK13271 treA trehalase; Provisional
Probab=60.71 E-value=50 Score=33.65 Aligned_cols=78 Identities=10% Similarity=0.137 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHHHhhccCCcCCC-ccccccCCCCCCCCCCCCCCCC----CCCccHHHHHHHHHHHCCChHHHHHHHHHH
Q psy5277 192 PSANIARALATIFSTNVRGFEAG-SMGAVNGMKPNGDRDRSAIQSE----EVWTGVTYLLSAAMLYEGNVDEAWTTAGGL 266 (314)
Q Consensus 192 ~~e~~~~~l~~v~~~~~~~~~gG-~~G~~~~~~p~g~~~~~~~~~g----~vW~~~~~~lA~~~~~~G~~~~A~~l~~~~ 266 (314)
|....++.++.+|+.+..+.... ..+.... +-.+++.+| |+.=|++|++..+++..|+.+.|+.+++.+
T Consensus 115 ~~~~~~~~i~~lW~~L~R~~~~~~~~~sli~------lp~p~iVPGGRFrE~YYWDSY~i~~GLl~s~~~~~a~~mi~Nf 188 (569)
T PRK13271 115 EGQSLREHIDGLWPVLTRSTENTEKWDSLLP------LPEPYVVPGGRFREVYYWDSYFTMLGLAESGHWDKVADMVANF 188 (569)
T ss_pred ccHHHHHHHHHHHHHhcCcCCCCCCCCceec------CCCCeEecCCCcchhhhhHHHHHHHhhHhcCCHHHHHHHHHHH
Confidence 34556678888888665543210 0000000 111344443 788899999999999999999999999998
Q ss_pred HHHHHHHhCC
Q psy5277 267 YRTVYERTGL 276 (314)
Q Consensus 267 ~~~~~~~~g~ 276 (314)
...+ +++|.
T Consensus 189 ~~~i-~~yG~ 197 (569)
T PRK13271 189 AHEI-DTWGH 197 (569)
T ss_pred HHHH-HHhCc
Confidence 8888 88995
No 52
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=60.04 E-value=1.1e+02 Score=31.73 Aligned_cols=96 Identities=16% Similarity=0.197 Sum_probs=62.5
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh---hCCCCCcccccCCCCchH-------HhHHHHHHHHHHHHH
Q psy5277 51 NLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCES---FDKQGLGIVQNGGFPDQT-------AYCGGLHIAALACMV 120 (314)
Q Consensus 51 ~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~---~d~d~dGL~~~~g~~d~t-------~~~~al~y~AL~~~a 120 (314)
++..+..+.+|+..|||..-++ .+.+-++-+.. +|.=+-|+-..+--..|. .|.|++... +.+
T Consensus 211 ~~~~l~~Llr~~~~~~d~~~~~----~~~~TL~~ma~GGIyDhlgGGF~RYStD~~WlvPHFEKMLyDnA~l~~---~y~ 283 (667)
T COG1331 211 PPHLLLFLLRYSLRTGDERALD----MVLRTLDAMARGGIYDHLGGGFFRYSTDREWLVPHFEKMLYDNALLLR---AYA 283 (667)
T ss_pred ChHHHHHHHHHHHhhCCHHHHH----HHHHHHHHHHccCCccccCCceeeeecCCceechhHHHHHHHHHHHHH---HHH
Confidence 4557888899999999955443 45555655544 322234555443212232 788886654 445
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcC--cceee
Q psy5277 121 EMSSLLNDTQQQQQFSAKLTKASQVYHDLLWT--GSYYK 157 (314)
Q Consensus 121 ~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~--~~~~~ 157 (314)
+.....|++ .|+..++.+..-+.+.+|. |.||.
T Consensus 284 ~ay~~tgd~----~y~~~a~~i~~~l~rel~sp~ggFys 318 (667)
T COG1331 284 EAYRATGDD----LYRRAAEGILDYLLRELYSPEGGFYS 318 (667)
T ss_pred HHHHHhCCH----HHHHHHHHHHHHHHHHhcCCCCceee
Confidence 555568876 6889999999999999997 34665
No 53
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=59.90 E-value=1.7e+02 Score=28.30 Aligned_cols=223 Identities=12% Similarity=0.039 Sum_probs=108.9
Q ss_pred HHHhhhhcccccc-cCC-CCCCccc-CCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhh
Q psy5277 12 FRSAANTHERYYT-RWF-PEEEPFS-LINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESF 88 (314)
Q Consensus 12 ~~~~~~~~~~~~~-~g~-p~~~p~~-~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~ 88 (314)
+.+++.-...|++ ++- |+-.=+. ..+.=-++|++. -=.+--|++..+.++..+|+.+..+ .+..+++.+.++
T Consensus 76 ~~~~v~hG~~y~~~~~R~~~gg~~~~~~~dg~~~Dat~-d~Y~haFallA~A~~a~a~~~~a~~----~~~~a~~~l~~~ 150 (388)
T COG2942 76 WLDAVAHGIAYLARVGRDPEGGWYFALDNDGGPVDATK-DLYGHAFALLAAAHAATAGPPRADE----LLDEALDVLERR 150 (388)
T ss_pred HHHHHHhHHHHHHhcCcCCCCCeEEEecCCCCcccccH-hHHHHHHHHHHHHHHHhcCChhHHH----HHHHHHHHHHHH
Confidence 5566666666763 343 3321111 111222233331 1112348888888888899877554 345566666551
Q ss_pred C-CCCCcccc--cCCCCchHHhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCcceee----ecCC
Q psy5277 89 D-KQGLGIVQ--NGGFPDQTAYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTGSYYK----FDSS 161 (314)
Q Consensus 89 d-~d~dGL~~--~~g~~d~t~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~~~~~~----~d~~ 161 (314)
- ..+.+|.. .+.++.. +..+-=.-..+.++..-.+..|+ ..|.+.|.++.+.+..+|-+++-+. ||..
T Consensus 151 ~~~~~~pl~~~e~~~~~~~-pl~sNp~MHl~EA~LA~~e~~~~----~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~d 225 (388)
T COG2942 151 FWREEHPLGGFEEDNPGSA-PLGSNPHMHLLEAMLAAYEATGE----KTWLDRADRIADLIISRFADAESGLVREHFDHD 225 (388)
T ss_pred HhhhcCCcccccccCCCCC-ccCCCcchHHHHHHHHHHhccCc----hhHHHHHHHHHHHHHHHhhhcccCcHhhhcccc
Confidence 1 12223322 1111111 11111112334444444455554 5899999999999999999753222 3332
Q ss_pred CC----CCCCccccccccchhhhhhcCCCCCCCCC----hHHHHHHHHHHHhhccCCcCCCccccccCCCCCCCCCCCCC
Q psy5277 162 QS----RHSDSIMADQLCGYLFLKASGVNTEAIFP----SANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAI 233 (314)
Q Consensus 162 ~~----~~~~~~~~~ql~gq~~~~~lgl~~~~il~----~e~~~~~l~~v~~~~~~~~~gG~~G~~~~~~p~g~~~~~~~ 233 (314)
.. .+...+.|++-+ .|.-+++-+. .... .++++++.++..+.-+.+-.| |+...+.++|++..+
T Consensus 226 W~p~~~frg~~~ePGH~f-EW~~Lll~~a--~~~~~~~l~~~A~~lf~~a~~~g~d~~~g---g~~~sl~~D~~~~d~-- 297 (388)
T COG2942 226 WNPAHGFRGRGIEPGHQF-EWAWLLLDIA--RRRGRAWLIEAARRLFDIAVADGWDPERG---GAYYSLDDDGSPHDR-- 297 (388)
T ss_pred CCcCCCcccCCCCCchHH-HHHHHHHHHH--HHhchhHHHHHHHHHHHHHHHhccCcccC---eEEEEecCCCCcCCH--
Confidence 21 234567787554 4443333222 1112 245555555555543333222 222233444443321
Q ss_pred CCCCCCccHHHHHHHHHHHC
Q psy5277 234 QSEEVWTGVTYLLSAAMLYE 253 (314)
Q Consensus 234 ~~g~vW~~~~~~lA~~~~~~ 253 (314)
..--||.+.++=|+..+..
T Consensus 298 -~~r~WpQ~E~l~AA~ala~ 316 (388)
T COG2942 298 -QQRLWPQTEALKAAVALAE 316 (388)
T ss_pred -HHhhChHHHHHHHHHHHHh
Confidence 1147999988777766655
No 54
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=56.77 E-value=28 Score=34.93 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=34.7
Q ss_pred CCCccHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhCC
Q psy5277 237 EVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGL 276 (314)
Q Consensus 237 ~vW~~~~~~lA~~~~~~G~~~~A~~l~~~~~~~~~~~~g~ 276 (314)
|.+=|++|++..+++..|+.+.|..+++.++..+ +++|.
T Consensus 128 E~YyWDSYfi~~GLl~s~~~~~a~~mi~Nf~~~i-~~yGf 166 (512)
T PF01204_consen 128 EMYYWDSYFIILGLLASGMYETAKGMIENFLYLI-DRYGF 166 (512)
T ss_dssp S-BHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHHSS
T ss_pred cchhHhHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhCc
Confidence 6899999999999999999999999999999888 88995
No 55
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=56.24 E-value=31 Score=21.72 Aligned_cols=27 Identities=22% Similarity=-0.006 Sum_probs=22.1
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHH
Q psy5277 243 TYLLSAAMLYEGNVDEAWTTAGGLYRT 269 (314)
Q Consensus 243 ~~~lA~~~~~~G~~~~A~~l~~~~~~~ 269 (314)
-+.+|..+...|+.++|.++++.+++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456788899999999999997776654
No 56
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=54.34 E-value=1.2e+02 Score=28.23 Aligned_cols=99 Identities=13% Similarity=0.043 Sum_probs=63.3
Q ss_pred CcccccChhHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHhhCCCCCcccccCC-CCc--hH--HhHHHHHHHHHHH
Q psy5277 45 SDWKDLNLKFIVSIYRDYALHK-DIRFLTRVYPTCLELIRKCESFDKQGLGIVQNGG-FPD--QT--AYCGGLHIAALAC 118 (314)
Q Consensus 45 ~~w~D~~~~fi~~~~~y~~~Tg-D~~fl~~~~p~vk~al~~~~~~d~d~dGL~~~~g-~~d--~t--~~~~al~y~AL~~ 118 (314)
+.|+=.+-|++.++-+.++.+. |.+--.++...+++.++.+.+. .+++|+....- .++ .- +-.++++..+|..
T Consensus 183 ~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~-q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~ 261 (336)
T PF07470_consen 183 SFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARY-QDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLR 261 (336)
T ss_dssp --BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT-STTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHH
T ss_pred ccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhc-CCCCCCcceecCCCCCCCcccHHHHHHHHHHHHH
Confidence 3588899999999999998874 4555566777788888887775 45888876321 011 11 2333344444432
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh
Q psy5277 119 MVEMSSLLNDTQQQQQFSAKLTKASQVYHDL 149 (314)
Q Consensus 119 ~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~ 149 (314)
.. ..|-.+ .+.|.+.|+++-+++.++
T Consensus 262 gi----~~g~~d-~~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 262 GI----RLGLLD-PEEYRPAAEKALEALLSN 287 (336)
T ss_dssp HH----HTTSST-HHHHHHHHHHHHHHHHHC
T ss_pred HH----HcCCCc-cHHHHHHHHHHHHHHHhC
Confidence 22 234332 478999999999998876
No 57
>KOG2430|consensus
Probab=50.57 E-value=1.2e+02 Score=28.89 Aligned_cols=87 Identities=14% Similarity=0.023 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhC-CCCC--cccccCCCCchH-------HhHHHHHHHHHHHHHHHH
Q psy5277 54 FIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFD-KQGL--GIVQNGGFPDQT-------AYCGGLHIAALACMVEMS 123 (314)
Q Consensus 54 fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~d-~d~d--GL~~~~g~~d~t-------~~~~al~y~AL~~~a~lA 123 (314)
.|+-....-+.||+.-|=+ +.+++++|+-+.. ...| |...+--.+||+ +-+-++|-.-|++.+
T Consensus 190 lilefaals~~tg~~ifee----~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgigagidsyyey~lkayi--- 262 (587)
T KOG2430|consen 190 LILEFAALSRFTGAPIFEE----KARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGIGAGIDSYYEYLLKAYI--- 262 (587)
T ss_pred hhhhHHHHhhccCChhhHH----HHHHHHHHHHHHhcccccccceeEEeccCcceecccCcCcchHHHHHHHHHHhh---
Confidence 5666666667899976644 6789999996521 2211 332221123554 555666656666554
Q ss_pred HHcCCcHHHHHHHHHHHHHHHHHHH
Q psy5277 124 SLLNDTQQQQQFSAKLTKASQVYHD 148 (314)
Q Consensus 124 ~~lG~~~~a~~~~~~a~~~k~~~~~ 148 (314)
+|||+..-+++..-.+.++.-+++
T Consensus 263 -llgddsfldrfn~hydai~ryi~k 286 (587)
T KOG2430|consen 263 -LLGDDSFLDRFNKHYDAIKRYINK 286 (587)
T ss_pred -eeccHHHHHHHHHHHHHHHHHhcC
Confidence 579888778888777777776664
No 58
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=50.24 E-value=33 Score=22.26 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=21.3
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHH
Q psy5277 244 YLLSAAMLYEGNVDEAWTTAGGLYR 268 (314)
Q Consensus 244 ~~lA~~~~~~G~~~~A~~l~~~~~~ 268 (314)
+-+|..++..|+.+.|.++++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4578999999999999999887763
No 59
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=49.30 E-value=38 Score=32.08 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhCCCCCcccc
Q psy5277 54 FIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFDKQGLGIVQ 97 (314)
Q Consensus 54 fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~d~d~dGL~~ 97 (314)
|+..+++.|+.|||.+.++ .+++..+. . .+++|++.
T Consensus 41 ~lyGv~~~~eAT~d~~yl~----~l~~~~d~---~-i~~~g~~~ 76 (357)
T COG4225 41 FLYGVARAYEATGDAEYLD----YLKTWFDE---Q-IDEGGLPP 76 (357)
T ss_pred hHHHHHHHHHHcCcHHHHH----HHHHHHHh---h-hccCCCCc
Confidence 8899999999999998775 34444443 2 35556544
No 60
>KOG2429|consensus
Probab=45.69 E-value=94 Score=31.42 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=26.4
Q ss_pred HHHCCChHHHHHHHHHHHHHHHHHhCCCCCCCccccCC
Q psy5277 250 MLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGD 287 (314)
Q Consensus 250 ~~~~G~~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~ 287 (314)
....|+.+.|.+...-.+.. |.++|. +||.|.-.
T Consensus 326 qvLaGDvd~A~~~h~~y~~v-wkkyG~---lPEryN~~ 359 (622)
T KOG2429|consen 326 QVLAGDVDDAIRTHLMYFSV-WKKYGF---LPERYNLA 359 (622)
T ss_pred hhhhcchHHHHHHHHHHHHH-HHHcCC---Cccccccc
Confidence 34559999999987776655 588986 99999766
No 61
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=45.63 E-value=33 Score=19.41 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=19.9
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHH
Q psy5277 244 YLLSAAMLYEGNVDEAWTTAGGLYRT 269 (314)
Q Consensus 244 ~~lA~~~~~~G~~~~A~~l~~~~~~~ 269 (314)
+.+|..+...|+.++|.++++.+++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45677777779999999997776643
No 62
>PF02011 Glyco_hydro_48: Glycosyl hydrolase family 48; InterPro: IPR000556 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 48 GH48 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). The largest cellulase gene sequenced to date is one of the cellulases (celA) from the genome of the thermophilic anaerobic bacterium Caldocellum saccharolyticum. The celA gene product is a polypeptide of 1751 amino acids; this has a multidomain structure comprising two catalytic domains and two cellulose-binding domains, linked by Pro-Thr-rich regions. The N-terminal domain encodes an endoglucanase activity on carboxymethylcellulose, consistent with its similarity to several endo-1, 4-beta-D-glucanase sequences. The C-terminal domain shows similarity to a cellulase from Clostridium thermocellum (CelS), which acts synergistically with a second component to hydrolyse crystalline cellulose [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1FAE_A 1FBO_A 1FBW_A 1FCE_A 1F9D_A 1F9O_A 1G9G_A 1G9J_A 2QNO_A 1L1Y_E ....
Probab=45.50 E-value=77 Score=32.06 Aligned_cols=57 Identities=12% Similarity=-0.011 Sum_probs=38.2
Q ss_pred cCCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh-hCCCCCc
Q psy5277 34 SLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCES-FDKQGLG 94 (314)
Q Consensus 34 ~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~-~d~d~dG 94 (314)
...|.|.......|.--+.|=+--|.+||..|||..- -..|+|.+.|.++ ..++.||
T Consensus 392 ~~~PVyhDPpSN~WfG~Q~Wsm~R~AeyYy~tGd~~a----k~ildKWv~W~~~~~~~~~dG 449 (619)
T PF02011_consen 392 DEQPVYHDPPSNRWFGMQAWSMERVAEYYYETGDARA----KAILDKWVAWALSNTTVNSDG 449 (619)
T ss_dssp ESSSS-TTTTTTTBTHHHHHHHHHHHHHHHHH--HHH----HHHHHHHHHHHHTT-EE-TTS
T ss_pred cCCcccCCCCCCCcccccchhHHHHHHHHHHhccHHH----HHHHHHHHHHHHhhceeCCCC
Confidence 3567777777888977777778888899999999652 3467888899887 2244444
No 63
>PF12854 PPR_1: PPR repeat
Probab=43.82 E-value=33 Score=20.48 Aligned_cols=20 Identities=30% Similarity=0.307 Sum_probs=16.4
Q ss_pred HHHHHHHHCCChHHHHHHHH
Q psy5277 245 LLSAAMLYEGNVDEAWTTAG 264 (314)
Q Consensus 245 ~lA~~~~~~G~~~~A~~l~~ 264 (314)
.+..++++.|+.++|.++++
T Consensus 12 ~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 12 TLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 35667889999999999954
No 64
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=41.57 E-value=1.6e+02 Score=30.71 Aligned_cols=50 Identities=28% Similarity=0.415 Sum_probs=39.6
Q ss_pred CCCccHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCC
Q psy5277 237 EVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGDKTY 290 (314)
Q Consensus 237 ~vW~~~~~~lA~~~~~~G~~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~g~~ 290 (314)
=+|+-+.+.+|.+|...|..++|.+.++++.+.+ ...|. + +=.+.-+|.+
T Consensus 294 yvW~RD~a~~a~AL~~~G~~~~a~~~~~~l~~~~-~~~G~-~--lq~y~vdG~~ 343 (648)
T TIGR01535 294 LVWPRDLYQVANAFLAAGDVDSALRSLDYLAKVQ-QDNGM-F--PQNSWVDGKP 343 (648)
T ss_pred EEehhhHHHHHHHHHHCCCHHHHHHHHHHHHHHh-ccCCC-c--CceeccCCCC
Confidence 4999999999999999999999999999999988 54552 2 2225555553
No 65
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=41.39 E-value=2.5e+02 Score=26.73 Aligned_cols=92 Identities=16% Similarity=0.192 Sum_probs=53.2
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHhhCCCCCcccc-cCCCCchHHhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy5277 61 DYALHKDIRFLTRVYPTCLELIRKCESFDKQGLGIVQ-NGGFPDQTAYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKL 139 (314)
Q Consensus 61 y~~~TgD~~fl~~~~p~vk~al~~~~~~d~d~dGL~~-~~g~~d~t~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a 139 (314)
.|+.|||..+++ .+.+..+++...-..+.|-.. ....++| ..+-+|+ -|.-.+++++..+|+++..+.-..+.
T Consensus 91 L~e~T~~~~Yl~----~a~~~a~~l~~~~Rt~eG~f~H~~~~p~Q-~W~DtL~-Ma~~F~ak~g~~~~~~e~~d~~~~QF 164 (357)
T COG4225 91 LYEQTGDPRYLE----AAIKLASWLVHEPRTKEGGFQHKVKYPHQ-MWLDTLY-MAGLFLAKYGQVTGRPEYFDEALYQF 164 (357)
T ss_pred hhhhhCCHHHHH----HHHHHHHHHhhCcccCCCccccccCchhH-hhhcchh-hhhHHHHHHHHHhCCHHHHHHHHHHH
Confidence 578999998875 566777777664222334332 2234555 4555555 55566788999999986443322221
Q ss_pred HHHHHHHHHhCcCc---ceee-ecCCC
Q psy5277 140 TKASQVYHDLLWTG---SYYK-FDSSQ 162 (314)
Q Consensus 140 ~~~k~~~~~~lW~~---~~~~-~d~~~ 162 (314)
..-.+.+=|. -||. ||..+
T Consensus 165 ----~~~~~~l~Dp~TGL~YH~wd~~~ 187 (357)
T COG4225 165 ----SLHEKYLRDPETGLYYHGWDEDG 187 (357)
T ss_pred ----HHHHHHccCCCcCceEEeeccCC
Confidence 1123344453 3665 77654
No 66
>KOG2429|consensus
Probab=41.14 E-value=3.1e+02 Score=27.88 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=70.9
Q ss_pred hhhHHHHHHhhhhcccccccCCCCCCcccCCCccccccCC----cc--cccChhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy5277 6 TMGEVKFRSAANTHERYYTRWFPEEEPFSLINGYNVFDVS----DW--KDLNLKFIVSIYRDYALHKDIRFLTRVYPTCL 79 (314)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~g~p~~~p~~~~~~y~~~D~~----~w--~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk 79 (314)
+|-+..++++|+.|. +|-..|+.+.|--.-+|.. -+ .-.+ +++-.-..=+.|||..|=+ ..+
T Consensus 155 rLA~dlA~RLLPAF~------T~TGiPy~~vNLk~GV~~~Et~~tctAg~gs--lllEFg~LSrLTGD~~fE~----vA~ 222 (622)
T KOG2429|consen 155 RLAEDLARRLLPAFE------TPTGIPYGRVNLKYGVDKGETTETCTAGAGS--LLLEFGTLSRLTGDPKFEK----VAR 222 (622)
T ss_pred HHHHHHHHhhccccc------CCCCCCcceeehhcCCCCCCCcceecccccc--eeeehhhhHHhhCCcHHHH----HHH
Confidence 567788888888765 2334444333322111111 00 1112 2222223345899987654 456
Q ss_pred HHHHHHHhhCCCCCcccccCC---CCchH-------HhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh
Q psy5277 80 ELIRKCESFDKQGLGIVQNGG---FPDQT-------AYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDL 149 (314)
Q Consensus 80 ~al~~~~~~d~d~dGL~~~~g---~~d~t-------~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~ 149 (314)
+|++-+-+. +.+-||+-+.= .+.|+ +-+-++|=.+|++++ ++|++++-+.|.+.++.+ ++.
T Consensus 223 ~A~~~lW~~-RS~igLlGn~idV~tG~W~~~~sGIGAgiDSfyEYllK~yI----Lfgd~e~lemf~ea~~ai----~~y 293 (622)
T KOG2429|consen 223 RALDALWSL-RSGIGLLGNHIDVQTGEWTAPDSGIGAGIDSFYEYLLKGYI----LFGDPELLEMFNEAYEAI----QKY 293 (622)
T ss_pred HHHHHHHhh-cCCCCcccceeeccccceeccccccccchHHHHHHHHHHhe----ecCCHHHHHHHHHHHHHH----HHH
Confidence 777766665 34577775430 01111 555666666666654 578887777777655544 545
Q ss_pred CcCcceeee
Q psy5277 150 LWTGSYYKF 158 (314)
Q Consensus 150 lW~~~~~~~ 158 (314)
+-.+.||..
T Consensus 294 ~r~~~wY~~ 302 (622)
T KOG2429|consen 294 TRKGPWYVN 302 (622)
T ss_pred hhcCCeEEE
Confidence 545677773
No 67
>PRK13270 treF trehalase; Provisional
Probab=40.34 E-value=54 Score=33.27 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=35.9
Q ss_pred CCCccHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhCC
Q psy5277 237 EVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGL 276 (314)
Q Consensus 237 ~vW~~~~~~lA~~~~~~G~~~~A~~l~~~~~~~~~~~~g~ 276 (314)
|+.=|++|++..+++..|+.+.|+.+++.+...+ +++|.
T Consensus 171 E~YYWDSYwi~~GLl~sg~~~~a~~mi~Nf~~li-~~yGf 209 (549)
T PRK13270 171 ETYYWDSYFTMLGLAESGREDLLKCMADNFAWMI-ENYGH 209 (549)
T ss_pred cchhhhHHHHHHHhhhcCcHHHHHHHHHHHHHHH-HHcCc
Confidence 7888999999999999999999999999988888 88995
No 68
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=36.08 E-value=1.9e+02 Score=29.01 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhC--CCCCcccccCCCCchHHhHHHHHHHHHHHHHHHHHHcCCcH
Q psy5277 53 KFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFD--KQGLGIVQNGGFPDQTAYCGGLHIAALACMVEMSSLLNDTQ 130 (314)
Q Consensus 53 ~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~d--~d~dGL~~~~g~~d~t~~~~al~y~AL~~~a~lA~~lG~~~ 130 (314)
..+-++..||+.|||..+| +.++|..+|+.+.. .+. +-....+.... . .-..++..|.+..|++
T Consensus 129 ~ll~gl~~~y~~tG~~~~L----~v~~k~ad~~~~~~~~~~~-~~~~~~~~~~~-~-------~i~~~l~~LY~~Tgd~- 194 (520)
T PF07944_consen 129 KLLEGLIDYYEATGNERAL----DVATKLADWVYRRLSRLGP-EPGQKMGYPEH-G-------GINEALVRLYEITGDE- 194 (520)
T ss_pred HHHHHHHHHHHHHCcHHHH----HHHHHHHHHHHHHhccCCH-HHhhccccccc-c-------hHHHHHHHHHHHhCCH-
Confidence 3577899999999998655 58889999984421 111 11111111111 1 1225677788888875
Q ss_pred HHHHHHHHHHHHHH
Q psy5277 131 QQQQFSAKLTKASQ 144 (314)
Q Consensus 131 ~a~~~~~~a~~~k~ 144 (314)
+|.++|++..+
T Consensus 195 ---~yL~lA~~f~~ 205 (520)
T PF07944_consen 195 ---RYLDLAEYFVD 205 (520)
T ss_pred ---HHHHHHHHHHH
Confidence 67777665543
No 69
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=33.29 E-value=1.1e+02 Score=18.11 Aligned_cols=33 Identities=6% Similarity=0.039 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Q psy5277 114 AALACMVEMSSLLNDTQQQQQFSAKLTKASQVY 146 (314)
Q Consensus 114 ~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~ 146 (314)
.++..++.+....|+.+.|..+.+.+-.+++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 456667777777898888888888887776654
No 70
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=32.29 E-value=2.6e+02 Score=27.16 Aligned_cols=78 Identities=14% Similarity=0.003 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCC--------CcccccC---CC---C--c--------h-HHhHHHHHHHHHHHHHHHHHH
Q psy5277 71 LTRVYPTCLELIRKCESFDKQG--------LGIVQNG---GF---P--D--------Q-TAYCGGLHIAALACMVEMSSL 125 (314)
Q Consensus 71 l~~~~p~vk~al~~~~~~d~d~--------dGL~~~~---g~---~--d--------~-t~~~~al~y~AL~~~a~lA~~ 125 (314)
+.++..-+|=.+||+++...++ ||-..+. .+ + + . ++..++...+||-.++.+-+.
T Consensus 93 ~~dllde~kwg~D~llkm~~~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~k~ 172 (444)
T PF00759_consen 93 IPDLLDEAKWGLDWLLKMQDSDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVFKD 172 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTBSCTTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccCCCCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhccc
Confidence 4677778889999999953332 2222111 00 0 0 0 134445555666665555444
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHh
Q psy5277 126 LNDTQQQQQFSAKLTKASQVYHDL 149 (314)
Q Consensus 126 lG~~~~a~~~~~~a~~~k~~~~~~ 149 (314)
. +++.+++|.+.|+++-+-..+.
T Consensus 173 ~-d~~~A~~~L~~A~~~~~~a~~~ 195 (444)
T PF00759_consen 173 F-DPAYAAQCLKAAKEAYAFAKKN 195 (444)
T ss_dssp T-THHHHHHHHHHHHHHHHHHHHS
T ss_pred C-CHHHHHHHHHHHHHHHHHHHhC
Confidence 3 6778899999888887765543
No 71
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=32.14 E-value=3.9e+02 Score=24.81 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=48.6
Q ss_pred ccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhCCCCCccccc----CCCCchHHhH-HHHHHHHHHHHHHHH
Q psy5277 49 DLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFDKQGLGIVQN----GGFPDQTAYC-GGLHIAALACMVEMS 123 (314)
Q Consensus 49 D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~d~d~dGL~~~----~g~~d~t~~~-~al~y~AL~~~a~lA 123 (314)
++|--=+.-+.+-|+.|+|..+ .+++.++++|+++.--..-|.+.. +++.+.-++. ++. .+.++.+..++
T Consensus 44 ~aT~~e~~fLa~~y~~t~d~~y----~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am-~~vl~lL~~i~ 118 (290)
T TIGR02474 44 GATVTEIRYLAQVYQQEKNAKY----RDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAM-VNVLTLLDDIA 118 (290)
T ss_pred ccHHHHHHHHHHHHHhcCchhH----HHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHH-HHHHHHHHHHH
Confidence 3444445566666788998554 468999999998831222355542 1111110121 111 26666776666
Q ss_pred HHcCC-----cHHHHHHHHHHHHHHHHHHH
Q psy5277 124 SLLND-----TQQQQQFSAKLTKASQVYHD 148 (314)
Q Consensus 124 ~~lG~-----~~~a~~~~~~a~~~k~~~~~ 148 (314)
+..++ .+..++.+...++.-+-|.+
T Consensus 119 ~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILk 148 (290)
T TIGR02474 119 NGKDPFDVFPDSTRTRAKTAVTKGIECILK 148 (290)
T ss_pred hccCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 54332 21224555555554444443
No 72
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=30.75 E-value=1e+02 Score=17.16 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=15.3
Q ss_pred HHHHHHHCCChHHHHHHHHH
Q psy5277 246 LSAAMLYEGNVDEAWTTAGG 265 (314)
Q Consensus 246 lA~~~~~~G~~~~A~~l~~~ 265 (314)
+..++.+.|+.++|.++.+.
T Consensus 6 li~~~~~~~~~~~a~~~~~~ 25 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKE 25 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44567788999999999443
No 73
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=30.11 E-value=2.1e+02 Score=26.63 Aligned_cols=100 Identities=17% Similarity=0.144 Sum_probs=55.6
Q ss_pred cccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhCCCCCccccc----CCCCchHHhHHHHHHHHHHHHHHHH
Q psy5277 48 KDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFDKQGLGIVQN----GGFPDQTAYCGGLHIAALACMVEMS 123 (314)
Q Consensus 48 ~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~d~d~dGL~~~----~g~~d~t~~~~al~y~AL~~~a~lA 123 (314)
.++|--=|.-+.+.|+.|+|..+. +++.|+++|+++--...-|.|-. .++.+.-++.=..-.+.|..+.+++
T Consensus 38 N~aT~~ei~fLa~~y~~t~d~~y~----~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~ 113 (289)
T PF09492_consen 38 NDATTTEIRFLARVYQATKDPRYR----EAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVA 113 (289)
T ss_dssp GGTTHHHHHHHHHHHHHCG-HHHH----HHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhCChHHH----HHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHH
Confidence 555666678888889999998554 58899999998822233366542 1111110122112236777778888
Q ss_pred HHcCCc-----HHHHHHHHHHHHHHHHHHHhCc
Q psy5277 124 SLLNDT-----QQQQQFSAKLTKASQVYHDLLW 151 (314)
Q Consensus 124 ~~lG~~-----~~a~~~~~~a~~~k~~~~~~lW 151 (314)
...++. +..+++++..++.-+-|.+.=.
T Consensus 114 ~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi 146 (289)
T PF09492_consen 114 EGKGDFAFVDESLRARARAAVDKGIDCILKTQI 146 (289)
T ss_dssp CT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-
T ss_pred hhcCCccccCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777644 3345555555555555555544
No 74
>PF13041 PPR_2: PPR repeat family
Probab=29.06 E-value=95 Score=19.83 Aligned_cols=26 Identities=19% Similarity=0.471 Sum_probs=19.3
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHHhCC
Q psy5277 246 LSAAMLYEGNVDEAWTTAGGLYRTVYERTGL 276 (314)
Q Consensus 246 lA~~~~~~G~~~~A~~l~~~~~~~~~~~~g~ 276 (314)
+..++.+.|+.++|.++ ++.+ .+.|+
T Consensus 9 li~~~~~~~~~~~a~~l----~~~M-~~~g~ 34 (50)
T PF13041_consen 9 LISGYCKAGKFEEALKL----FKEM-KKRGI 34 (50)
T ss_pred HHHHHHHCcCHHHHHHH----HHHH-HHcCC
Confidence 55667788999999999 6565 44563
No 75
>PF06301 Lambda_Kil: Bacteriophage lambda Kil protein; InterPro: IPR010444 This family consists of several Bacteriophage lambda Kil protein like sequences. A cessation of division, followed by one or two fairly synchronous cell divisions in Escherichia coli is due to two genetically separable events: a temporary block of cell division and, at the same time, a block to the initiation of new rounds of DNA replication. The cell division block is a result of the transient expression of the lambda kil gene []. The lambda kil gene has been shown to be responsible for premature lysis on the addition of chloramphenicol between 15 and 20 min after thermal induction of a lambda prophage []. Induction of a lambda prophage causes the death of the host cell even in the absence of phage replication and lytic functions due to expression of functions from the lambda p(L) operon. The kil gene causes cell death and filamentation [].
Probab=28.79 E-value=1.6e+02 Score=19.07 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Q psy5277 114 AALACMVEMSSLLNDTQQQQQFSAKLTKASQVYH 147 (314)
Q Consensus 114 ~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~ 147 (314)
.+.+.=+.||+-+||. ..|.+.-+.+|.+++
T Consensus 6 ~aaQsK~~IA~flGD~---~mw~eA~e~~k~ai~ 36 (43)
T PF06301_consen 6 RAAQSKAAIARFLGDE---KMWSEANEAMKIAIG 36 (43)
T ss_pred HHHHHHHHHHHHHccH---HHHHHHHHHHHHHhC
Confidence 4455667789999987 689998888988876
No 76
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=28.50 E-value=1.3e+02 Score=20.25 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=20.6
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHH
Q psy5277 244 YLLSAAMLYEGNVDEAWTTAGGLYRT 269 (314)
Q Consensus 244 ~~lA~~~~~~G~~~~A~~l~~~~~~~ 269 (314)
|.+|.+..+.|+.++|++.++.+++.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 66888888889999999998777654
No 77
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=27.65 E-value=2.2e+02 Score=28.61 Aligned_cols=89 Identities=10% Similarity=0.028 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhh----CCCCCcccccC-------C-CCc--hH--------------
Q psy5277 54 FIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESF----DKQGLGIVQNG-------G-FPD--QT-------------- 105 (314)
Q Consensus 54 fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~----d~d~dGL~~~~-------g-~~d--~t-------------- 105 (314)
+|++.+.+++.+||.. .+++-+++.+. .-.++|++... + +.| +|
T Consensus 216 LiYaA~~l~~~~gd~~--------a~~Wak~L~~QYVlaR~PeTG~~vYQFssp~kr~~p~dd~~T~S~~GDRAqRQFGP 287 (557)
T PF06917_consen 216 LIYAASMLAKYDGDEG--------ALAWAKHLYRQYVLARHPETGLPVYQFSSPLKREPPADDNDTQSWYGDRAQRQFGP 287 (557)
T ss_dssp HHHHHHHHHHHH--HH--------HHHHHHHHHHHTTTTS-TTT----S-SEEE---S--S-TT---GGG--HHHHHHHH
T ss_pred HHHHHHHHHhccCchH--------HHHHHHHHHHHhhhccCCCCCCceeeecCccccCCCccccccccchhhHHHhhhcc
Confidence 6999999999999954 33444455441 12367887521 1 001 11
Q ss_pred --------------HhHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcC
Q psy5277 106 --------------AYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWT 152 (314)
Q Consensus 106 --------------~~~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~ 152 (314)
.-...++...-.++.+|++.||+++ ++..+++-.--+++-+.-||
T Consensus 288 EfG~iA~EanvLFk~d~~~i~~dn~La~l~l~~~lG~~~--~~~l~W~i~gL~a~~~yAYd 346 (557)
T PF06917_consen 288 EFGDIAREANVLFKGDPRPIVQDNPLAQLELARQLGQDD--KEMLTWAIDGLKAYYRYAYD 346 (557)
T ss_dssp HH-TT--GGGEE-TTHHHHHHTHHHHHHHHHHHHTGGGG--HHHHHHHHHHHHHHHHHHEE
T ss_pred ccchhHhhhhheeccCCCceeecCHHHHHHHHHHhCCch--HHHHHHHHHHHHHHHHHhhc
Confidence 1123455566668899999999874 56666665555555555564
No 78
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=26.62 E-value=1e+02 Score=16.87 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=15.7
Q ss_pred HHHHHHHCCChHHHHHHHHHH
Q psy5277 246 LSAAMLYEGNVDEAWTTAGGL 266 (314)
Q Consensus 246 lA~~~~~~G~~~~A~~l~~~~ 266 (314)
+...+.+.|+.++|.++.+.+
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHccchHHHHHHHHHHH
Confidence 455677889999999995443
No 79
>KOG0602|consensus
Probab=26.47 E-value=1.2e+02 Score=31.12 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=35.7
Q ss_pred CCCccHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhCCC
Q psy5277 237 EVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGLG 277 (314)
Q Consensus 237 ~vW~~~~~~lA~~~~~~G~~~~A~~l~~~~~~~~~~~~g~~ 277 (314)
+.-.|++||++.+++..++.+-|.-.++.++..+ +++|.+
T Consensus 185 E~YyWDsywii~GLl~S~m~~takGmieNf~~lV-~~yG~i 224 (600)
T KOG0602|consen 185 ELYYWDSYWIIKGLLASQMFDTAKGMIENFISLV-DTYGFI 224 (600)
T ss_pred eeecccHHHHHHhHHhhcccHHHHHHHHHHHHHH-HhcCcc
Confidence 6788999999999999999999999999988887 888863
No 80
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=25.72 E-value=1e+02 Score=21.34 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=22.4
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHH
Q psy5277 244 YLLSAAMLYEGNVDEAWTTAGGLYRTV 270 (314)
Q Consensus 244 ~~lA~~~~~~G~~~~A~~l~~~~~~~~ 270 (314)
..+..+++..|..++|.++++.+...+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 346778999999999999999988877
No 81
>KOG3635|consensus
Probab=25.51 E-value=8.8e+02 Score=26.20 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=54.3
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHhhccCCcCCCccccccCCC-CCCCCCCCCCCCC---------CCCccH-HHHHHHHH
Q psy5277 182 ASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMK-PNGDRDRSAIQSE---------EVWTGV-TYLLSAAM 250 (314)
Q Consensus 182 ~lgl~~~~il~~e~~~~~l~~v~~~~~~~~~gG~~G~~~~~~-p~g~~~~~~~~~g---------~vW~~~-~~~lA~~~ 250 (314)
.++.|.|.+-|+.-+..+.++|.+.+-.+|+...+ ..-|.+ |.-++..-.|++. .-||.. .|.+..+.
T Consensus 272 iiSfPAFaveD~~Lv~qTk~~Iv~rLqgkyGckRF-lRDGYkT~~EDpsRlYY~~aELk~FE~IECEWPlF~~y~IiDgv 350 (1150)
T KOG3635|consen 272 IISFPAFAVEDPQLVSQTKDEIVSRLQGKYGCKRF-LRDGYKTPLEDPSRLYYEPAELKLFENIECEWPLFFCYMIIDGV 350 (1150)
T ss_pred hccccchhcCcHHHHHHHHHHHHHHhhcchhhhhh-hhccccCccCCccccccCHHHHhhhcCceeccHHHHHHHHHHHH
Confidence 45555566677888999999998877666532110 011222 2222332233332 379976 56666666
Q ss_pred HHCCChHHHHHHHHHHHHHHH-HHhCCCCCCCcccc
Q psy5277 251 LYEGNVDEAWTTAGGLYRTVY-ERTGLGFETPEGLT 285 (314)
Q Consensus 251 ~~~G~~~~A~~l~~~~~~~~~-~~~g~~~~~PE~~~ 285 (314)
.. |+.++-.++.+.+-..+. .+.| +--.||.|.
T Consensus 351 Fs-~n~~qVeeY~~~Le~vLv~~~nG-~~lVpelY~ 384 (1150)
T KOG3635|consen 351 FS-GNAEQVEEYQEALESVLVRSKNG-IPLVPELYY 384 (1150)
T ss_pred hc-CCHHHHHHHHHHHHHHheeCCCC-cccccceee
Confidence 54 776655555333322221 2346 445677764
No 82
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=24.83 E-value=4.1e+02 Score=22.96 Aligned_cols=100 Identities=18% Similarity=0.329 Sum_probs=60.0
Q ss_pred CcccccC--hhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhCCCCCcccccCC--------CCc-hHHhH-HHHH
Q psy5277 45 SDWKDLN--LKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFDKQGLGIVQNGG--------FPD-QTAYC-GGLH 112 (314)
Q Consensus 45 ~~w~D~~--~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~~~~d~d~dGL~~~~g--------~~d-~t~~~-~al~ 112 (314)
..|..+. -..+-.+.|-|+.|||..+|+ +.+++++...-- .++.|++.... .+. ..+++ |+ +
T Consensus 24 ~gW~SamaQG~a~s~l~RAy~~t~d~~Yl~----aA~~al~~f~~~-~~~GG~~~~~~~~~~wyeEYp~~p~s~VLNG-f 97 (189)
T PF06662_consen 24 PGWYSAMAQGQAISVLARAYQLTGDEKYLD----AAKKALNSFKVP-VEEGGVLATFKNKYPWYEEYPTTPPSYVLNG-F 97 (189)
T ss_pred CCcHhHHHHHHHHHHHHHHHHhHCCHHHHH----HHHHHHHHhcCh-HhhCCeeEEecCCcEeEeecCCCCCCEEeeh-H
Confidence 3554442 223777789999999999886 667888776532 34456554321 111 11232 33 3
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcC
Q psy5277 113 IAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWT 152 (314)
Q Consensus 113 y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~~~~~lW~ 152 (314)
+.+|-..-+++...++.+..+-|.+-.+.+|+.+- ++|
T Consensus 98 iysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp--~yD 135 (189)
T PF06662_consen 98 IYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLP--LYD 135 (189)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH--hhh
Confidence 35677777777777766655667777777777663 455
No 83
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=24.77 E-value=1.4e+02 Score=16.85 Aligned_cols=26 Identities=19% Similarity=0.103 Sum_probs=20.5
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHH
Q psy5277 244 YLLSAAMLYEGNVDEAWTTAGGLYRT 269 (314)
Q Consensus 244 ~~lA~~~~~~G~~~~A~~l~~~~~~~ 269 (314)
+.++..+...|+.++|.+.++..++.
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45677788889999999997776654
No 84
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=24.57 E-value=86 Score=27.05 Aligned_cols=33 Identities=30% Similarity=0.408 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHH
Q psy5277 109 GGLHIAALACMVEMSSLL-NDTQQQQQFSAKLTK 141 (314)
Q Consensus 109 ~al~y~AL~~~a~lA~~l-G~~~~a~~~~~~a~~ 141 (314)
+++||-||..++++.+.- +++..++.|.++++.
T Consensus 144 ~GiWyDaL~~La~lr~~~p~d~~l~~~W~~LL~s 177 (189)
T PF06051_consen 144 NGIWYDALATLAELRRSQPNDPQLAQDWQELLES 177 (189)
T ss_pred hCchHHHHHHHHHHHHcCCCChHHHHHHHHHHHh
Confidence 779999999999997763 355667778877663
No 85
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=24.07 E-value=3.6e+02 Score=21.74 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy5277 112 HIAALACMVEMSSLLNDTQQQQQFSAKLT 140 (314)
Q Consensus 112 ~y~AL~~~a~lA~~lG~~~~a~~~~~~a~ 140 (314)
+..+|-+.+.-|+.+|+.++..++.+...
T Consensus 91 fLRal~aLa~AA~~IGE~dE~~Rc~~~L~ 119 (129)
T PF11349_consen 91 FLRALAALARAAQAIGETDEYDRCRQFLR 119 (129)
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHH
Confidence 55888889999999999988887777544
No 86
>KOG2244|consensus
Probab=23.69 E-value=7.8e+02 Score=25.25 Aligned_cols=130 Identities=11% Similarity=0.193 Sum_probs=69.2
Q ss_pred hhHHHHHHhhhhccccc-c--cCCCCCCcccCCCccccccCCcccccChhHHHHHHHHHHHhCCH-HHHHHHHHHHHHHH
Q psy5277 7 MGEVKFRSAANTHERYY-T--RWFPEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDI-RFLTRVYPTCLELI 82 (314)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-~--~g~p~~~p~~~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~-~fl~~~~p~vk~al 82 (314)
...++++.+|.+..+.. + .--|. |+..+-=...|.-. .|-.+.+-++.++-. +.++ ..+..+
T Consensus 470 lsve~~kkll~e~~e~L~~aR~kRPk-------PHLDsKii~sWnGL---viSgl~kag~~~~a~~~y~~----~a~~~a 535 (786)
T KOG2244|consen 470 LSVEKYKKLLGECREKLFDARLKRPK-------PHLDSKIIVSWNGL---VISGLAKAGKILKAEPEYTK----YAFPVA 535 (786)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhcCCC-------CCccchheeeccch---hhHHHHHHHHHhhcCHHHHH----HHHHHH
Confidence 34567777777777766 2 21244 44444444456433 566666666655533 4444 445556
Q ss_pred HHHHhhCCC-CCccc-ccC------C------CCchH-Hh--HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy5277 83 RKCESFDKQ-GLGIV-QNG------G------FPDQT-AY--CGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQV 145 (314)
Q Consensus 83 ~~~~~~d~d-~dGL~-~~~------g------~~d~t-~~--~~al~y~AL~~~a~lA~~lG~~~~a~~~~~~a~~~k~~ 145 (314)
+|+.+...| +.+|+ ..+ | .+-+. .+ --+.. .+....+.+.-|+. +|.++|.++++.
T Consensus 536 ~fl~k~m~d~~eklliR~scY~ga~g~ve~~n~~~~~~~FldDYAFl---I~gLLDlYea~~~~----e~LkwA~~LQdt 608 (786)
T KOG2244|consen 536 NFLPKDMIDVAEKLLIRGSCYDGASGRVEHSNRPSKAPAFLDDYAFL---ISGLLDLYEAGGGI----EWLKWAIKLQDT 608 (786)
T ss_pred hhhhhhhhchhhhheeecccccCCCcceeccCCccccchhhhhHHHH---HHHHHHHHHccCch----HHHHHHHHHHHH
Confidence 666552111 22332 211 1 00000 11 11222 34445566666654 688999999999
Q ss_pred HHHhCcCcc-eee
Q psy5277 146 YHDLLWTGS-YYK 157 (314)
Q Consensus 146 ~~~~lW~~~-~~~ 157 (314)
-.+.||||. ||.
T Consensus 609 qdklFWdgggYF~ 621 (786)
T KOG2244|consen 609 QDKLFWDGGGYFI 621 (786)
T ss_pred HHHheecCCceee
Confidence 999999954 555
No 87
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=23.54 E-value=1.5e+02 Score=16.62 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=19.2
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHH
Q psy5277 244 YLLSAAMLYEGNVDEAWTTAGGLYRT 269 (314)
Q Consensus 244 ~~lA~~~~~~G~~~~A~~l~~~~~~~ 269 (314)
+.++..+...|+.++|.+..+..++.
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45677888889999999987666543
No 88
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.38 E-value=1.5e+02 Score=16.61 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=17.4
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHHhC
Q psy5277 246 LSAAMLYEGNVDEAWTTAGGLYRTVYERTG 275 (314)
Q Consensus 246 lA~~~~~~G~~~~A~~l~~~~~~~~~~~~g 275 (314)
+...+.+.|+.+.|.++ ++.+ .+.|
T Consensus 7 ll~a~~~~g~~~~a~~~----~~~M-~~~g 31 (34)
T PF13812_consen 7 LLRACAKAGDPDAALQL----FDEM-KEQG 31 (34)
T ss_pred HHHHHHHCCCHHHHHHH----HHHH-HHhC
Confidence 44456678999999998 5555 3355
No 89
>cd00244 AlgLyase Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond.
Probab=23.11 E-value=3.9e+02 Score=25.43 Aligned_cols=106 Identities=9% Similarity=0.024 Sum_probs=61.9
Q ss_pred hhHHHHHHhhhhcccccccCCCCCCccc-CCCccccccCCcccccChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q psy5277 7 MGEVKFRSAANTHERYYTRWFPEEEPFS-LINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKC 85 (314)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~g~p~~~p~~-~~~~y~~~D~~~w~D~~~~fi~~~~~y~~~TgD~~fl~~~~p~vk~al~~~ 85 (314)
+..+....|-+||.+|.+-=+ .++-+ +....|.|+. | +=+.+-..-..|||.++++......++++
T Consensus 146 ~~~~d~~~i~~Wf~~~l~wl~--s~~~~~e~~~~NNHgy--W------ya~qVaa~A~~tg~~~l~~~a~~~~~~~~--- 212 (339)
T cd00244 146 ADTEQAERIEKWFARVADQVV--SDWSGLPLKKINNHSY--W------AAWSVMATGVATNRRDLFDWAVGEYKVAA--- 212 (339)
T ss_pred CCHHHHHHHHHHHHHHHHHHh--cccCcCchhhccCcHH--H------HHHHHHHHHHHhCCHHHHHHHHHHHHHHH---
Confidence 445667778888888886522 11111 2244666654 6 55666666678999999999887776643
Q ss_pred HhhCCCCCccc-ccCCCCchH-HhHHHHHHHHHHHHHHHHHHcCC
Q psy5277 86 ESFDKQGLGIV-QNGGFPDQT-AYCGGLHIAALACMVEMSSLLND 128 (314)
Q Consensus 86 ~~~d~d~dGL~-~~~g~~d~t-~~~~al~y~AL~~~a~lA~~lG~ 128 (314)
.+. +.||-. .+......+ .|-+ +=+.+|..++++|+..|.
T Consensus 213 ~QI--~~DGsqP~ELaR~tRslhYs~-FnL~al~~iA~lAe~~Gv 254 (339)
T cd00244 213 GQV--DEDGFLPNELKRRQRALAYHN-YALPPLAMIAEFAQRNGV 254 (339)
T ss_pred hhh--cccCCCcHHHhhhhhhhHHHh-hhHHHHHHHHHHHHHcCC
Confidence 223 444533 221111111 2222 224778888888888884
No 90
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=22.10 E-value=3.1e+02 Score=28.12 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=43.1
Q ss_pred CCCccHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCCCCchhhhHHHHHHHH
Q psy5277 237 EVWTGVTYLLSAAMLY-EGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGDKTYRSGGYMRALAVYAMQDA 307 (314)
Q Consensus 237 ~vW~~~~~~lA~~~~~-~G~~~~A~~l~~~~~~~~~~~~g~~~~~PE~~~~~g~~~~~~Y~r~~~~w~~~~a 307 (314)
..|--+|++..-++.. .|+.++|++++..+.+.+ +.|+ +|..|...|. .+.|...=++|-...|
T Consensus 292 ~~WGRDt~Isl~Gl~l~tgr~~~A~~iL~~fa~~~--~~Gl---iPN~~~~~g~--~p~YntvDAtLWfi~a 356 (575)
T TIGR01561 292 DDWGRDSFISLEGLLLIDKQFDEAKEAILKFANLC--KRGL---IPNNFIAFGG--DPIYNGVDASLWAIHA 356 (575)
T ss_pred ccchhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh--HCCC---CCCccCCCCC--CccCCCchHHHHHHHH
Confidence 4677778877777766 489999999999987776 4676 8888866543 2455544444333333
No 91
>PLN02345 endoglucanase
Probab=20.90 E-value=8.3e+02 Score=24.34 Aligned_cols=79 Identities=9% Similarity=-0.067 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCcccccCC----------CC-ch--------------HHhHHHHHHHHHHHHHHHH
Q psy5277 69 RFLTRVYPTCLELIRKCESFDKQGLGIVQNGG----------FP-DQ--------------TAYCGGLHIAALACMVEMS 123 (314)
Q Consensus 69 ~fl~~~~p~vk~al~~~~~~d~d~dGL~~~~g----------~~-d~--------------t~~~~al~y~AL~~~a~lA 123 (314)
.-+.++...+|=.+||+++...++.++...-| .+ +. ++.+.+-..+||-+++.+-
T Consensus 79 ~~~~~~ldelkw~~Dyllk~~~~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~~~~~~pgsd~a~~~AAAlA~as~vf 158 (469)
T PLN02345 79 NQLDSAKDSLKWITDYLINAHPSENVLYIQVGDPKLDHKCWERPETMDEKRPLTKINTSSPGSEVAAETAAAMAAASLVF 158 (469)
T ss_pred cchHHHHHHHhHHHHHHHHhcCCCCeEEEEecCCCCCcccCCChhhcCCcceEEecCCCCCCcHHHHHHHHHHHHHHHHh
Confidence 35677888889999999884333323322111 00 00 0233334445555554444
Q ss_pred HHcCCcHHHHHHHHHHHHHHHHHHH
Q psy5277 124 SLLNDTQQQQQFSAKLTKASQVYHD 148 (314)
Q Consensus 124 ~~lG~~~~a~~~~~~a~~~k~~~~~ 148 (314)
+.. |++.++++.+.|+++-+-..+
T Consensus 159 k~~-D~~YA~~lL~~Ak~ly~fa~~ 182 (469)
T PLN02345 159 KSS-DSTYSDTLLKHAKQLFNFADK 182 (469)
T ss_pred ccC-CHHHHHHHHHHHHHHHHHHHh
Confidence 332 566778888888777665554
No 92
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A ....
Probab=20.52 E-value=3.1e+02 Score=19.09 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHH
Q psy5277 112 HIAALACMVEMSSLL-NDTQQQQQFSAKLTKA 142 (314)
Q Consensus 112 ~y~AL~~~a~lA~~l-G~~~~a~~~~~~a~~~ 142 (314)
...+|..++++.+.. |++-.+..|+..+..+
T Consensus 4 i~~~L~~la~~~~~~~~~~~r~~aY~~Aa~~i 35 (68)
T PF14716_consen 4 IADALEELADLYELQGGDPFRARAYRRAAAAI 35 (68)
T ss_dssp HHHHHHHHHHHHHHTSTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence 457889999999998 6665566677655444
Done!