RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5277
         (314 letters)



>gnl|CDD|218212 pfam04685, DUF608, Protein of unknown function, DUF608.  This
           family represents a conserved region with a pankaryotic
           distribution in a number of uncharacterized proteins.
          Length = 357

 Score =  289 bits (741), Expect = 1e-96
 Identities = 113/290 (38%), Positives = 159/290 (54%), Gaps = 13/290 (4%)

Query: 28  PEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCES 87
           P E+P+   N Y   D   WKDLNL F++ +YRDY L  D  FL  ++P   + +    S
Sbjct: 70  PIEDPWDRTNAYIYHDTYRWKDLNLGFVLQVYRDYKLTGDKEFLKDMWPAVKKAMDYLIS 129

Query: 88  FDKQGLGIVQNGGFPDQT----------AYCGGLHIAALACMVEMSSLLNDTQQQQQFSA 137
           +DK G G+ +N G PDQT          +YCG L +AAL   +EM+ +L DT+   ++  
Sbjct: 130 WDKDGDGLPENSGHPDQTYDDWPLYGVSSYCGSLWLAALRAAIEMAKILGDTEDAARYRE 189

Query: 138 KLTKASQVYHDLLWTGSYYKF-DSSQSRHSDSIMADQLCGYLFLKASGVNTEAIFPSANI 196
            L KA + Y   LW G Y+     S  ++SDS MADQL G  + +  G+    +     I
Sbjct: 190 LLEKARKAYERKLWNGEYFIQWIDSSYQYSDSCMADQLLGQWYARLLGL--GDVLDEEKI 247

Query: 197 ARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAMLYEGNV 256
             AL +I+  N + F  G  GAVNGM P+G  D  ++QS EVWTG+ Y L+A M+ EG V
Sbjct: 248 KSALRSIYKYNFKKFLNGEAGAVNGMWPDGSVDTPSVQSLEVWTGIEYALAAHMIQEGMV 307

Query: 257 DEAWTTAGGLYRTVYERTGLGFETPEGLTGDKTYRSGGYMRALAVYAMQD 306
           +E    A G+Y     R G  + TPE +T + TYR   YMR +A++A+Q 
Sbjct: 308 EEGLKIAKGVYDRYDGRLGNPWNTPEAITANGTYRGSHYMRPMAIWAIQL 357


>gnl|CDD|226800 COG4354, COG4354, Predicted bile acid beta-glucosidase
           [Carbohydrate transport and metabolism].
          Length = 721

 Score =  155 bits (393), Expect = 2e-42
 Identities = 89/301 (29%), Positives = 138/301 (45%), Gaps = 32/301 (10%)

Query: 28  PEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCES 87
           P E            D + WKDL   F++ +YRD+    D  FL  VYP  +E I   + 
Sbjct: 421 PNEHSIEKPIYGTYQDPNLWKDLGPDFVLLVYRDFKFTNDREFLKEVYPVIVEAIDWLKR 480

Query: 88  FDKQGLGIVQNGGFPDQT----------AYCGGLHIAALACMVEMSSLLNDTQQQQQ--- 134
           FD+   GI +N G  D T          +YCG L IAAL   +E+S  L D  Q +    
Sbjct: 481 FDQDNDGIPENSGAMDNTFDATRIQGHSSYCGSLFIAALIAALEISKYLLDNAQLEALNE 540

Query: 135 --------FSAKLTKASQVYHDLLWTGSYYKFDSSQSRHSDSIMADQLCGYLFLKASGVN 186
                   ++  L +A + ++  LW G YY   S+    +DS++A QLCG  +  A+ + 
Sbjct: 541 ASKNYVDFYNTWLKEAREAFNKYLWNGKYYILWSNSG--NDSVLASQLCGQFY--ATLLG 596

Query: 187 TEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRD-RSAIQSEEVWTGVTYL 245
              I     I  AL +I+  N   F A    A NG++P+G      ++Q   VW G+ + 
Sbjct: 597 LPDIVDHDKIKSALESIYDLN---FNASEYCAANGVRPDGSPVNPLSVQPLSVWPGINFA 653

Query: 246 LSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLT--GDKTYRSGGYMRALAVYA 303
           L+A M+  G  DE +  A  ++  +    GL F  P  +   G +T R   Y+ + +++A
Sbjct: 654 LAAHMIQMGMKDEGFELAENVWNQLKN-NGLQFRQPSAINAVGGETNRLSHYVGSPSIWA 712

Query: 304 M 304
           +
Sbjct: 713 L 713


>gnl|CDD|114894 pfam06202, GDE_C, Amylo-alpha-1,6-glucosidase.  This family
           includes human glycogen branching enzyme. This enzyme
           contains a number of distinct catalytic activities. It
           has been shown for the yeast homologue that mutations in
           this region disrupt the enzymes
           Amylo-alpha-1,6-glucosidase (EC:3.2.1.33).
          Length = 367

 Score = 33.5 bits (77), Expect = 0.13
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 37  NGYNVFDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRK 84
             YN  D S W      FI +I +      D  FL R+YPT  E+I+ 
Sbjct: 75  PRYNTVDASLW------FIYAIQKYLEYTGDKEFLRRIYPTIQEIIQA 116


>gnl|CDD|130624 TIGR01561, gde_arch, glycogen debranching enzyme, archaeal type,
           putative.  The seed for this model is composed of two
           uncharacterized archaeal proteins from Methanosarcina
           acetivorans and Sulfolobus solfataricus. Trusted cutoff
           is set so that essentially only archaeal members hit the
           model. The notable exceptions to archaeal membership are
           the Gram positive Clostridium perfringens which scores
           much better than some other archaea and the
           Cyanobacterium Nostoc sp. which scores just above the
           trusted cutoff. Noise cutoff is set to exclude the
           characterized eukaryotic glycogen debranching enzyme in
           S. cerevisiae. These cutoffs leave the prokaryotes
           Porphyromonas gingivalis and Deinococcus radiodurans
           below trusted but above noise. Multiple alignments
           including these last two species exhibit sequence
           divergence which may suggest a subtly different function
           for these prokaryotic proteins [Energy metabolism,
           Biosynthesis and degradation of polysaccharides].
          Length = 575

 Score = 31.2 bits (70), Expect = 0.69
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 12/74 (16%)

Query: 13  RSAANTHERYYTR-WFPEEEPFSLING---YNVFDVSDWKDLNLKFIVSIYRDYALHKDI 68
           + A         R   P    F    G   YN  D S W       I +I + +A  +D 
Sbjct: 316 KEAILKFANLCKRGLIPNN--FIAFGGDPIYNGVDASLW------AIHAIDKTFAYSQDF 367

Query: 69  RFLTRVYPTCLELI 82
            F+  V    L++I
Sbjct: 368 LFIRDVVDKVLDII 381


>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein
           Serine/Threonine Kinase, cGMP-dependent protein kinase. 
           Serine/Threonine Kinases (STKs), cGMP-dependent protein
           kinase (cGK or PKG) subfamily, catalytic (c) domain.
           STKs catalyze the transfer of the gamma-phosphoryl group
           from ATP to serine/threonine residues on protein
           substrates. The cGK subfamily is part of a larger
           superfamily that includes the catalytic domains of other
           protein STKs, protein tyrosine kinases, RIO kinases,
           aminoglycoside phosphotransferase, choline kinase, and
           phosphoinositide 3-kinase. Mammals have two cGK isoforms
           from different genes, cGKI and cGKII. cGKI exists as two
           splice variants, cGKI-alpha and cGKI-beta. cGK consists
           of an N-terminal regulatory domain containing a
           dimerization and an autoinhibitory pseudosubstrate
           region, two cGMP-binding domains, and a C-terminal
           catalytic domain. Binding of cGMP to both binding sites
           releases the inhibition of the catalytic center by the
           pseudosubstrate region, allowing autophosphorylation and
           activation of the kinase. cGKI is a  soluble protein
           expressed in all smooth muscles, platelets, cerebellum,
           and kidney. It is also expressed at lower concentrations
           in other tissues. cGKII is a membrane-bound protein that
           is most abundantly expressed in the intestine. It is
           also present in the brain nuclei, adrenal cortex,
           kidney, lung, and prostate. cGKI is involved in the
           regulation of smooth muscle tone, smooth cell
           proliferation, and platelet activation. cGKII plays a
           role in the regulation of secretion, such as renin
           secretion by the kidney and aldosterone secretion by the
           adrenal. It also regulates bone growth and the circadian
           rhythm.
          Length = 262

 Score = 28.7 bits (65), Expect = 3.7
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 21/70 (30%)

Query: 54  FIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESFDKQGLGIVQNGGFPDQTA--YCGGL 111
           FIV +YR +   K I  L        E     E +      +   G F + TA  Y    
Sbjct: 54  FIVKLYRTFKDKKYIYMLM-------EYCLGGELWTI----LRDRGLFDEYTARFYI--- 99

Query: 112 HIAALACMVE 121
                AC+V 
Sbjct: 100 -----ACVVL 104


>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General
           function prediction only].
          Length = 340

 Score = 28.0 bits (63), Expect = 6.0
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 12/58 (20%)

Query: 59  YRDYALHKDIRFLTRVYPTCLELIRKCESFDKQGLGIVQNGGFPDQTAYCGGLHIAAL 116
           +++YA   D   L ++ P+   L           LG++   G P  TAY G L I   
Sbjct: 103 WQEYA-ISDGEGLRKLDPSPAPLSAY--------LGVL---GMPGLTAYFGLLDIGQP 148


>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP
           (GTPase-activator protein [GAP] for Rho-like small
           GTPases) domain of fungal SAC7 and BAG7-like proteins.
           Both proteins are GTPase activating proteins of Rho1,
           but differ functionally in vivo: SAC7, but not BAG7, is
           involved in the control of Rho1-mediated activation of
           the PKC-MPK1 pathway. Small GTPases cluster into
           distinct families, and all act as molecular switches,
           active in their GTP-bound form but inactive when
           GDP-bound. The Rho family of GTPases activates effectors
           involved in a wide variety of developmental processes,
           including regulation of cytoskeleton formation, cell
           proliferation and the JNK signaling pathway. GTPases
           generally have a low intrinsic GTPase hydrolytic
           activity but there are family-specific groups of GAPs
           that enhance the rate of GTP hydrolysis by several
           orders of magnitude.
          Length = 225

 Score = 27.8 bits (62), Expect = 6.3
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 175 CGYLFLKASGVNTEAIFP---SANIARALATIFST 206
           CG ++LK +    E IF    S+   R L  IFST
Sbjct: 39  CG-VYLKENATEVEGIFRVAGSSKRIRELQLIFST 72


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0722    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,948,778
Number of extensions: 1492156
Number of successful extensions: 1025
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1017
Number of HSP's successfully gapped: 11
Length of query: 314
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 217
Effective length of database: 6,635,264
Effective search space: 1439852288
Effective search space used: 1439852288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)