RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5277
(314 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 8e-05
Identities = 49/264 (18%), Positives = 83/264 (31%), Gaps = 87/264 (32%)
Query: 22 YYT------RWFPEEEPFSLING--------YNVF----DVSD-WKDLNLKFIVSIYRDY 62
Y T R F ++ +L +F + D +++L +Y+ Y
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL-----RDLYQTY 180
Query: 63 ALHKDIRFLTRVYPTCLELIR---KCESFDKQGLGIVQ----NGGFPDQTAYCGGLHIAA 115
+ + T ELIR E QGL I++ PD+ Y L
Sbjct: 181 HVLVG-DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK-DY---LLSIP 235
Query: 116 LACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTGSYYKF-DSSQSRHSDSIMADQL 174
++C L Q+ H Y + + L
Sbjct: 236 ISC-------------------PLIGVIQLAH-------YVVTAKLLGFTPGE--LRSYL 267
Query: 175 CGYLFLKASGVNTEAIFPSA---------NIARALATIFSTNVRGFEAGSMGAVNGMKPN 225
G + G+ T A+ + ++ +A+ +F VR +EA PN
Sbjct: 268 KG-ATGHSQGLVT-AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA---------YPN 316
Query: 226 GDRDRSAIQ-SEEVWTGV-TYLLS 247
S ++ S E GV + +LS
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLS 340
Score = 35.0 bits (80), Expect = 0.034
Identities = 42/245 (17%), Positives = 71/245 (28%), Gaps = 91/245 (37%)
Query: 15 AANTHERYYTRWFPEEEP--FSLINGYNVFDVS-DWKDLNLKFIVSIYRDYALHKDIRFL 71
N+H P + SL+NG VS + L Y L+ +R
Sbjct: 355 KTNSH-------LPAGKQVEISLVNGAKNLVVSGPPQSL-----------YGLNLTLRKA 396
Query: 72 --------TRVYPTCLELIRKCESFDKQGLGIVQNGGFPDQTA-YCGGLHIAALACMVEM 122
+R+ P RK F + L + + + H
Sbjct: 397 KAPSGLDQSRI-PFSE---RK-LKFSNRFLPV---------ASPF----H---------- 428
Query: 123 SSLLNDTQQQQQFSAKLTKASQVYHDLLWTGS------YYKFDSSQSRHSDSIMADQLCG 176
S LL + L K +++ + Y FD S R +++++
Sbjct: 429 SHLLVPA--SDLINKDLVK-----NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD 481
Query: 177 YLFLKASGVNTEAI--FPSANI-------ARALATIFSTNVRG-----FEAGSMGAVNGM 222
+ V E F + +I A L + N G AG++
Sbjct: 482 CIIRLP--VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDI---- 535
Query: 223 KPNGD 227
P+ D
Sbjct: 536 NPDDD 540
Score = 33.9 bits (77), Expect = 0.076
Identities = 36/242 (14%), Positives = 69/242 (28%), Gaps = 94/242 (38%)
Query: 110 GLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYH---------DLLWTGSYYKF-- 158
A +Q Q+QF+ L + ++ + +L+ G + +
Sbjct: 25 ASFFIA-------------SQLQEQFNKILPEPTEGFAADDEPTTPAELV--GKFLGYVS 69
Query: 159 ---DSSQSRHSDSIMADQLCGY--LFLKASGVNTEAIFPSANIARALATIFSTNVRG--- 210
+ S+ D ++ L + +L+ + ++ +A L T +
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA--------LAAKLLQENDTTLVKTKE 121
Query: 211 -----FEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAM-----LY-----EGN 255
A M +P + SA L A L +GN
Sbjct: 122 LIKNYITARIMAK----RPFDKKSNSA------------LFRAVGEGNAQLVAIFGGQGN 165
Query: 256 VDEAWTTAGGLY----RTVYERTGLGFETPEGLTGDKTYRSGGYMRALA--VYAMQDAYL 309
D+ Y R +Y +T L GD S + L + +
Sbjct: 166 TDD--------YFEELRDLY-------QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 310 KG 311
+G
Sbjct: 211 QG 212
Score = 31.6 bits (71), Expect = 0.42
Identities = 39/221 (17%), Positives = 75/221 (33%), Gaps = 53/221 (23%)
Query: 71 LTRVYPTCLELIRKCESFDKQGLG-----IVQNGGFPDQ-TAYCGGLHIAALACMVEMSS 124
L + ++ + ++ K G IV N P T + GG + S+
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN--PVNLTIHFGGEKGKRIR--ENYSA 1690
Query: 125 LLNDTQQQQQFSAKLTKASQVYHDLLWTGSYYKFDSSQSRHSD------SIMADQLCGYL 178
++ +T K +++ ++ + Y F S + S ++ + +
Sbjct: 1691 MIFET-----IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 179 FLKASG-VNTEAIFP-------SANIARALATIFS-------TNVRG---------FEAG 214
LK+ G + +A F +A +A +LA + S RG E G
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAA-LA-SLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 215 ----SMGAVNGMKPNGDRDRSAIQS--EEVWTGVTYLLSAA 249
M A+N + + A+Q E V +L+
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Score = 28.9 bits (64), Expect = 2.9
Identities = 23/132 (17%), Positives = 36/132 (27%), Gaps = 45/132 (34%)
Query: 211 FEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSA------AML---Y--------E 253
FE G + K + + + + + LLSA A+ +
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHS--TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 254 GNVDEAWTTAG---GLY----------------RTVYERTG--LGFETPEGLTGDKTYRS 292
G + T AG G Y V+ R G + P G Y
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPRDELGRSNYG- 1808
Query: 293 GGYMRALAVYAM 304
M A+ +
Sbjct: 1809 ---MIAINPGRV 1817
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I
hydrolase; 1.90A {Bacillus SP}
Length = 956
Score = 42.1 bits (98), Expect = 2e-04
Identities = 22/185 (11%), Positives = 51/185 (27%), Gaps = 19/185 (10%)
Query: 42 FDVSDWKDLNLKFIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESF-DKQGLGIVQNGG 100
+ +W +I++ A + F R++P + D GL +
Sbjct: 624 SVIPNWTFF---WILACREYAAHTGNEAFAARIWPAVKHTLTHYLEHIDDSGLLNMAGWN 680
Query: 101 FPD----------QTAYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLL 150
D + + AL +++ T++ F+A+ ++ + +L
Sbjct: 681 LLDWAPIDQPNEGIVTHQNLFLVKALRDSRALAAAAGATEEADAFAARADLLAETINAVL 740
Query: 151 WTGSYYKFDSSQSRHSDSIMADQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRG 210
W + + + G + A + S
Sbjct: 741 WDEEKRAYIDCIHADGRRSDVYSMQTQVVAYLCG-----VAQGEREAVIEGYLSSPPPAF 795
Query: 211 FEAGS 215
+ GS
Sbjct: 796 VQIGS 800
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.001
Identities = 39/278 (14%), Positives = 88/278 (31%), Gaps = 72/278 (25%)
Query: 17 NTHE-RYYTRWFPEEEPF--SLINGYNVFDVSDWKDLNL--KFIVSIYRDYALHKDIRFL 71
H + R + +P+ L+ NV + W NL K ++ R + +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL-TTRFKQVTDFLSAA 284
Query: 72 TRVYPT------------CLELIRKCESFDKQGLGIVQNGGFPDQTAYCGGLHIAALACM 119
T + + L+ K Q L P + ++ +A
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--------PREVLTTNPRRLSIIAES 336
Query: 120 V-EMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTGSYYKFDSSQSRHSDSIMADQLCGYL 178
+ + + ++ + KLT + S + ++ R +
Sbjct: 337 IRDGLATWDNWKHVN--CDKLTTIIES--------SLNVLEPAEYRKM----------FD 376
Query: 179 FLKASGVNTEAIFP-SANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAI--QS 235
L ++FP SA+I L ++ +V + + VN + S + Q
Sbjct: 377 RL--------SVFPPSAHIPTILLSLIWFDVIKSDVMVV--VNKL-----HKYSLVEKQP 421
Query: 236 EEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYER 273
+E + S + + ++ + L+R++ +
Sbjct: 422 KE---STISIPSIYLELKVKLENEYA----LHRSIVDH 452
Score = 39.1 bits (90), Expect = 0.002
Identities = 29/205 (14%), Positives = 64/205 (31%), Gaps = 58/205 (28%)
Query: 26 WF--PEEEP---------FSLINGYNVFDVSDWKDLNLKFIVSIYRDYALHKDI---RFL 71
WF + + +SL+ + L+ V + +YALH+ I +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 72 TRVYPT---------------------CLELIRKCESFDKQGLGIVQNGGFPDQTAYCGG 110
+ + + +E + F + + F +Q
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM----VFLDFRFLEQK----- 506
Query: 111 LHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTGSYYKF------DSSQSR 164
+ + A S+LN QQ + + + Y L+ + F + S+
Sbjct: 507 IRHDSTAWNAS-GSILNTLQQLKFYKPYICDNDPKYERLV--NAILDFLPKIEENLICSK 563
Query: 165 HSDSIMADQLCGYLFLKASGVNTEA 189
++D + ++ L + + EA
Sbjct: 564 YTDLL---RIA--LMAEDEAIFEEA 583
Score = 32.9 bits (74), Expect = 0.16
Identities = 29/224 (12%), Positives = 54/224 (24%), Gaps = 117/224 (52%)
Query: 1 MSLVWT----------MGEVKFRSAANTHERYYTRWFP----------EEEPF---SLIN 37
+SL+W + ++ S + T P E E S+++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 38 GYNVFDVSDWKD----------------------------------LNLKFI-------- 55
YN+ D D L+ +F+
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 56 ---------------VSIYRDY---------ALHKDI-RFLTRVYPTCLELIRKCESFDK 90
+ Y+ Y L I FL P E + + D
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL----PKIEENLICSKYTD- 566
Query: 91 QGLGIVQNGGFPDQTAYCGGLHIAALACMVEMSSLLNDTQQQQQ 134
+++ +A M E ++ + +Q Q
Sbjct: 567 ----LLR------------------IALMAEDEAIFEEAHKQVQ 588
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure
initiative II, NYSGXRC, (alpha/alpha)6 barrel domain;
2.33A {Bacteroides thetaiotaomicron vpi-5482}
Length = 739
Score = 36.2 bits (83), Expect = 0.013
Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 13/148 (8%)
Query: 54 FIVSIYRDYALHKDIRFLTRVYPTCLELIRKCESF-DKQGL--GIVQNGGFPD------- 103
+ +S+Y Y D F+ ++YP ++ +K G+ G+ + F D
Sbjct: 389 WFLSVYDYYMYSGDRHFVNQLYPRMQTMMDYVLGRTNKNGMVEGMSGDWVFVDWADGYLD 448
Query: 104 ---QTAYCGGLHIAALACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLWTGSYYKFDS 160
+ ++ L +L M + L+ D QQ++ + W F
Sbjct: 449 KKGELSFEQVLFCRSLETMALCADLVGDKDGQQKYEKLASALKAKLEPTFWNNQKQAFVH 508
Query: 161 SQSRHSDSIMADQLCGYLFLKASGVNTE 188
+ S + + +N +
Sbjct: 509 NCVDGRQSDAVTRYANMFSVFFDYLNAD 536
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase,
alpha/alpha barrel, hydrolase; HET: BMA; 1.50A
{Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Length = 761
Score = 30.2 bits (67), Expect = 0.93
Identities = 29/291 (9%), Positives = 71/291 (24%), Gaps = 24/291 (8%)
Query: 5 WTMGEVKFRSAANTHERYYTRWFPEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYAL 64
+ + + + EE L N V + + L + V+ +
Sbjct: 442 GATRDKAHNTESGEMLFTVKKGDKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGR 501
Query: 65 HKDIRFLTRVYPTCLELIRKCESFDKQGLGIVQNGG---------FPDQTAYCGGLHIAA 115
F + + + +N ++ +
Sbjct: 502 DDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSD 561
Query: 116 LACMVEMSSLLNDTQQQQQFSAKLTKASQVYHDLLW---TGSYYKFDSSQSRHSDSIMAD 172
+ EM+++L ++ +++ + + + ++ T YY ++
Sbjct: 562 NHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGK 621
Query: 173 QLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSA 232
+ + A A+ + +G A
Sbjct: 622 PIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTA-------ALTNPA 674
Query: 233 IQSEE-----VWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGF 278
++ VW + M G D+A A +R T G
Sbjct: 675 FGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGP 725
>4a58_A Ribonucleoside-diphosphate reductase small chain; oxidoreductase,
epstein-BARR virus, R2 subunit; 1.68A {Human
herpesvirus 4} PDB: 4a5c_A 4a5d_A 4a5e_A 4a5f_A 4a5h_A
4a5i_A 4a5j_A
Length = 324
Score = 28.0 bits (63), Expect = 4.3
Identities = 7/27 (25%), Positives = 8/27 (29%), Gaps = 7/27 (25%)
Query: 25 RWFPEEEPFSLINGYNVFDVSDWKDLN 51
RWF + D K LN
Sbjct: 46 RWFAAHIVLTK-------DCGCLKLLN 65
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 4.6
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 21/72 (29%)
Query: 3 LVWTMGEVKFRSAANTHERYYTRWFPEE--EPFSLINGYNVFDVSDWKDLNLKFIVSIYR 60
+ W MG + + N R YT W + EP V D + + Y
Sbjct: 854 MAWIMGFISY-HNGNLKGRPYTGWVDSKTKEP-----------VDDKD------VKAKYE 895
Query: 61 DYAL-HKDIRFL 71
L H IR +
Sbjct: 896 TSILEHSGIRLI 907
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase,
hyperthermophIle, ribokinase ribokinase fold; 1.70A
{Methanococcus jannaschii} PDB: 2c49_A
Length = 302
Score = 26.8 bits (60), Expect = 8.4
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 180 LKASGVNTEAIFPSANIARALATIFST----NVRGFEAGSMGAVNGMKPNGDRDRSAIQS 235
LK +N ++ S A IF+ + F G+ + P +
Sbjct: 78 LKNLDINISKLYYSEEEETPKAWIFTDKDNNQITFFLWGAAKHYKELNPPNFNTEIVHIA 137
Query: 236 EE 237
Sbjct: 138 TG 139
>3fro_A GLGA glycogen synthase; glycosyltransferase family,
UDP/ADP-glucose-glycogen synthas rossman folds,
transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB:
2bis_A* 3l01_A*
Length = 439
Score = 27.1 bits (61), Expect = 9.5
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 9/49 (18%)
Query: 264 GGLYRTVYERTGLGFE--TPEGLTGDKTYRSGGYMRALAVYAMQDAYLK 310
GGL + TG+ + P L ++AL + + +
Sbjct: 363 GGLRDIITNETGILVKAGDPGELA-------NAILKALELSRSDLSKFR 404
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.406
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,860,414
Number of extensions: 283391
Number of successful extensions: 491
Number of sequences better than 10.0: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 26
Length of query: 314
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 221
Effective length of database: 4,105,140
Effective search space: 907235940
Effective search space used: 907235940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)