RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5277
         (314 letters)



>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 299

 Score = 27.5 bits (60), Expect = 2.2
 Identities = 8/86 (9%), Positives = 23/86 (26%), Gaps = 2/86 (2%)

Query: 4   VWTMGEVKFRSAANTHERYYTRWFPEEEPFSLINGYNVFDVSDWKDLNLKFIVSIYRDYA 63
           +W +G +           +       ++   +           W D+        ++ + 
Sbjct: 184 MWAVGCILAELL--LRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFP 241

Query: 64  LHKDIRFLTRVYPTCLELIRKCESFD 89
                   +      L+LI+    F+
Sbjct: 242 GIPLHHIFSAAGDDLLDLIQGLFLFN 267


>d1usha1 d.114.1.1 (A:363-550) 5'-nucleotidase (syn. UDP-sugar
           hydrolase), C-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 188

 Score = 25.8 bits (56), Expect = 6.0
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 227 DRDRSAIQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGL 266
           + DR  ++  +  T +  L+ AA +     D A  + GG+
Sbjct: 10  EGDRDKVRFVQ--TNMGRLILAAQMDRTGADFAVMSGGGI 47


>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella
          typhimurium [TaxId: 90371]}
          Length = 283

 Score = 25.9 bits (56), Expect = 6.5
 Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 7/26 (26%)

Query: 26 WFPEEEPFSLINGYNVFDVSDWKDLN 51
          W PE+ P S        D+  W+ L+
Sbjct: 26 WLPEKVPLSN-------DIPAWQTLS 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,168,840
Number of extensions: 52324
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 3
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)