BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5280
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 121 NSSLFWFVYGYPKPKVSFYF-NDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEAL 179
N++L V G+PKP V +Y E+I G +Y + G L I + D D +Y+
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80
Query: 180 ASNEHGTARQRVS 192
A+N+ G+ S
Sbjct: 81 ATNQGGSVSGTAS 93
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189
G P P +++ +LI+ G Y TR+ + +F N + +D G Y A N G ++
Sbjct: 130 GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQK 189
Query: 190 RV 191
V
Sbjct: 190 TV 191
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 121 NSSLFWFVYGYPKPKVSFYF-NDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEAL 179
N++L V G+PKP V +Y E+I G +Y + G L I + D D +Y+
Sbjct: 19 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 78
Query: 180 ASNEHGTARQRVS 192
A+N+ G+ S
Sbjct: 79 ATNQGGSVSGTAS 91
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189
G P P +++ +LI+ G Y TR+ + +F N + +D G Y A N G ++
Sbjct: 128 GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQK 187
Query: 190 RV 191
V
Sbjct: 188 TV 189
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 121 NSSLFWFVYGYPKPKVSFYF-NDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEAL 179
N++L V G+PKP V +Y E+I G +Y + G L I + D D +Y+
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80
Query: 180 ASNEHGTARQRVS 192
A+N+ G+ S
Sbjct: 81 ATNQGGSVSGTAS 93
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189
G P P +++ +LI+ G Y TR+ + +F N + +D G Y A N G ++
Sbjct: 130 GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQK 189
Query: 190 RV 191
V
Sbjct: 190 TV 191
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 60 KLNPERPKFEPYLP-PGVPFHPDKSFYFPRDFDLERPPREG--YAQA-PRFLNQEHDTQY 115
L+P+ EP L P V F + ++ + R +G QA P +L DT+
Sbjct: 246 SLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEA 305
Query: 116 GIKNENSSLFW--FVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDV 173
I S+L W G P+P V + N E + R + L +K+ D
Sbjct: 306 DI---GSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVL-----AGDLRFSKLSLEDS 357
Query: 174 GMYEALASNEHGT 186
GMY+ +A N+HGT
Sbjct: 358 GMYQCVAENKHGT 370
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 19/97 (19%)
Query: 99 GYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYF-----NDELIEM--GGRY 151
G+ QAP L+Q+ ++ ++ G P P++ ++F ND ++ G R
Sbjct: 23 GFVQAP--LSQQRWVGGSVELHCEAV-----GSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 152 D-----SSYTRNGQATLFINKMLDRDVGMYEALASNE 183
D ++Y ++ +T+ I+ +++ D G YE ASN+
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASND 112
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 112 DTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYT--RNGQATLFINKML 169
+T + E ++ V YP+P++S+ N LI++ +D+ Y+ NGQ L I +
Sbjct: 15 ETVDALVEEVATFMCAVESYPQPEISWTRNKILIKL---FDTRYSIRENGQ-LLTILSVE 70
Query: 170 DRDVGMYEALASNEHGTARQRVSS 193
D D G+Y A+N G A + +
Sbjct: 71 DSDDGIYCCTANNGVGGAVESCGA 94
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 129 YGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
G PKP VS+ D + R +S +L I+ + D G Y +A N GTA
Sbjct: 125 MGNPKPSVSWIKGDSAL----RENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 19/97 (19%)
Query: 99 GYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYF-----NDELIEM--GGRY 151
G+ QAP L+Q+ ++ ++ G P P++ ++F ND ++ G R
Sbjct: 23 GFVQAP--LSQQRWVGGSVELHCEAV-----GSPVPEIQWWFEGQGPNDIXSQLWDGARL 75
Query: 152 D-----SSYTRNGQATLFINKMLDRDVGMYEALASNE 183
D ++Y ++ +T+ I+ +++ D G YE ASN+
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASND 112
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVG 174
I+ +++ L V GYP P ++ +E+I++ + Y+ G + L I+ + D D G
Sbjct: 232 IAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSK---KYSLLGGSNLLISNVTDDDSG 288
Query: 175 MYEALAS--NEHGTARQRVS 192
Y + + NE+ +A ++
Sbjct: 289 TYTCVVTYKNENISASAELT 308
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTR-NGQATLFINKMLDRDVGMYEALASNEHGT 186
V G P P V++ N +++ S Y + G + L I ++ D G Y+ +A NE G
Sbjct: 336 VSGKPVPTVNWMKNGDVV-----IPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGN 390
Query: 187 AR 188
A+
Sbjct: 391 AQ 392
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFW--FVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
P +L+ DT+ I S L W G P+P V + + + + R + S G+
Sbjct: 295 PDWLDVITDTEADI---GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS---GGE- 347
Query: 162 TLFINKMLDRDVGMYEALASNEHGTA 187
L +K++ D GMY+ +A N+HGT
Sbjct: 348 -LRFSKLVLEDSGMYQCVAENKHGTV 372
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185
V G P P +S+ + + + + NG +L I + RD G+Y +A+N G
Sbjct: 33 VSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAG 90
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATL 163
PRF+ + + T+ G + ++++ + V P V+++ +D ++ +Y Y N L
Sbjct: 483 PRFIVKPYGTEVG-EGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG-L 540
Query: 164 FINKMLDRDVGMYEALASNEHGTARQRV 191
IN++ D G Y A N +GT + V
Sbjct: 541 TINRVKGDDKGEYTVRAKNSYGTKEEIV 568
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATL 163
PRF+ + + T+ G + ++++ + V P V+++ +D ++ +Y Y N L
Sbjct: 377 PRFIVKPYGTEVG-EGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG-L 434
Query: 164 FINKMLDRDVGMYEALASNEHGTARQRV 191
IN++ D G Y A N +GT + V
Sbjct: 435 TINRVKGDDKGEYTVRAKNSYGTKEEIV 462
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V G P P VS+Y N ++ + + G +L + D G Y +A N G A
Sbjct: 29 VSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEA 88
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 33.5 bits (75), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V G PKP + + N +++G D Y+ + L N +D G Y+ +A+N GT
Sbjct: 32 VKGNPKPHIRWKLNGTDVDIG--MDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTI 89
Query: 188 RQR 190
R
Sbjct: 90 VSR 92
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 100 YAQAPRFLNQEHDTQYGIKNENSSLFWFVY--GYPKPKVSFYFNDELIEMGGRYDSSYTR 157
YAQ P ++ +D ++ S+FW G PKP + N + + R
Sbjct: 293 YAQ-PNWVQIINDIHVAME---ESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE--- 345
Query: 158 NGQATLFINKMLDRDVGMYEALASNEHGT 186
Q TL I + D GMY+ +A N+HG
Sbjct: 346 --QGTLNITIVNLSDAGMYQCVAENKHGV 372
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V G PKP + + N +++G D Y+ + L N +D G Y+ +A+N GT
Sbjct: 31 VKGNPKPHIRWKLNGTDVDIG--MDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTI 88
Query: 188 RQR 190
R
Sbjct: 89 VSR 91
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 100 YAQAPRFLNQEHDTQYGIKNENSSLFWFVY--GYPKPKVSFYFNDELIEMGGRYDSSYTR 157
YAQ P ++ +D ++ S+FW G PKP + N + + R
Sbjct: 292 YAQ-PNWVQIINDIHVAME---ESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE--- 344
Query: 158 NGQATLFINKMLDRDVGMYEALASNEHGT 186
Q TL I + D GMY+ +A N+HG
Sbjct: 345 --QGTLNITIVNLSDAGMYQCVAENKHGV 371
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 11/120 (9%)
Query: 78 FHPDKSFYFPRDFDLERPPREGYAQ-APRFL--NQEHDTQYGIKNENSSLFWFVYGYPKP 134
FH + F L+ G A+ P F+ +Q ++ + L G P P
Sbjct: 193 FHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTP 252
Query: 135 KVSFYFNDELIEMGGRY--DSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+++Y + GG D + N L I + + D G Y LASN+ G+ R +S
Sbjct: 253 DIAWY------KKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTIS 306
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 96 PREGYAQAPRFLNQEHDTQYGIK-NENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSS 154
P G Q+PR + EH T +K NE ++L V G P+P + ++ + E + +
Sbjct: 2 PLAGQYQSPRII--EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHR 59
Query: 155 YTRNGQATLFINKML---DRDVGMYEALASNEHGTARQRVSS 193
A F M ++D G Y +A N G A R +S
Sbjct: 60 VQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHAS 101
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 96 PREGYAQAPRFLNQEHDTQYGIK-NENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSS 154
P G Q+PR + EH T +K NE ++L V G P+P + ++ + E + +
Sbjct: 2 PLAGQYQSPRII--EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHR 59
Query: 155 YTRNGQATLFINKML---DRDVGMYEALASNEHGTARQRVSS 193
A F M ++D G Y +A N G A R +S
Sbjct: 60 VQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHAS 101
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V GYP P+V ++ +D ++ + Y G +L I+++ D Y A N G A
Sbjct: 65 VEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEA 124
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 120 ENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEAL 179
E+ + V G K+++ ++ I GG Y + N ATL + K+ D G Y
Sbjct: 21 ESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN-TATLTVLKVTKGDAGQYTCY 79
Query: 180 ASNEHG 185
ASN G
Sbjct: 80 ASNVAG 85
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V GYP P+V ++ +D ++ + Y G +L I+++ D Y A N G A
Sbjct: 65 VEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEA 124
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 120 ENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEAL 179
E+ + V G K+++ ++ I GG Y + N ATL + K+ D G Y
Sbjct: 21 ESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN-TATLTVLKVTKGDAGQYTCY 79
Query: 180 ASNEHG 185
ASN G
Sbjct: 80 ASNVAG 85
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 120 ENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEAL 179
E+ + V G K+++ ++ I GG Y + N ATL + K+ D G Y
Sbjct: 213 ESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN-TATLTVLKVTKGDAGQYTCY 271
Query: 180 ASNEHG 185
ASN G
Sbjct: 272 ASNVAG 277
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V G P+ ++++Y + Y + +N A+L INK+ DVG Y A N G
Sbjct: 29 VDGTPEIRIAWYKEHTKLRSAPAYKMQF-KNNVASLVINKVDHSDVGEYTCKAENSVGAV 87
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 135 KVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
+VS+Y + EL++ +S+ N ATL I + VG Y ASN GTA
Sbjct: 132 QVSWYKDGELLKDDANLQTSFIHN-VATLQILQTDQSHVGQYNCSASNPLGTA 183
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185
G P+P +S++ N +LIE +Y + L + +++ D G Y A+N+ G
Sbjct: 124 GSPEPAISWFRNGKLIEENEKY---ILKGSNTELTVRNIINSDGGPYVCRATNKAG 176
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 157 RNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGNPA 197
++G TL I + +D G+YE + ++ G + R+ + A
Sbjct: 272 KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185
G P+P +S++ N +LIE +Y + L + +++ D G Y A+N+ G
Sbjct: 30 GSPEPAISWFRNGKLIEENEKY---ILKGSNTELTVRNIINSDGGPYVCRATNKAG 82
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185
G P+P +S++ N +LIE +Y + L + +++ D G Y A+N+ G
Sbjct: 220 GSPEPAISWFRNGKLIEENEKY---ILKGSNTELTVRNIINSDGGPYVCRATNKAG 272
>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11
Length = 207
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 157 RNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGNPA 197
++G TL I + +D G+YE + ++ G + R+ + A
Sbjct: 167 KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATL 163
P F+ + D Q G+ +S G PKP+V++ + + + + A L
Sbjct: 7 PVFIKKPVD-QIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 164 FINKMLD-RDVGMYEALASNEHG 185
I + RD +YE +A N HG
Sbjct: 66 RIQPLRTPRDENIYECVAQNPHG 88
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 29.6 bits (65), Expect = 1.1, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189
GYP P++ +Y N G +S++T L I ++ +RD G Y + +N +Q
Sbjct: 356 GYPPPEIKWYKN------GIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQ 409
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ 160
AP++ + + ++ ++ V G P P V + N + + GGR ++ T +G
Sbjct: 306 VSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS-GGR--ATVTDSG- 361
Query: 161 ATLFINKMLDRDVGMYEALASNEHG 185
L I + + D G Y A+NEHG
Sbjct: 362 --LVIKGVKNGDKGYYGCRATNEHG 384
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 157 RNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
++G TL I + +D G+YE + ++ G + R+
Sbjct: 57 KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRL 91
>pdb|2JTD|A Chain A, Skelemin Immunoglobulin C2 Like Domain 4
Length = 142
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 134 PKVSFYFNDELIEMGGRYDSSYTRN-GQATLFINKMLDRDVGMY 176
KVS+ FN++ I G +Y RN G +F+ K+ D D G Y
Sbjct: 68 AKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 111
>pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 795
Score = 28.1 bits (61), Expect = 3.1, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 153 SSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195
SS G AT F+++ +DR + + LAS E + RVSSG+
Sbjct: 361 SSRFEKGIATEFVDEAVDRACYLLQELASGE--VLQDRVSSGD 401
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|D Chain D, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 800
Score = 28.1 bits (61), Expect = 3.3, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 153 SSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195
SS G AT F+++ +DR + + LAS E + RVSSG+
Sbjct: 365 SSRFEKGIATEFVDEAVDRACYLLQELASGE--VLQDRVSSGD 405
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V G PKP VS+ N + + R + G L I D G Y A NE+G A
Sbjct: 29 VQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYG-A 87
Query: 188 RQ 189
RQ
Sbjct: 88 RQ 89
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASN 182
GYP P++ +Y N G +S++T L I ++ +RD G Y + +N
Sbjct: 226 GYPPPEIKWYKN------GIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTN 272
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 46 QAPRFLNQEHDTQEKLNPERPKFEPYLPPGVPFHPDKSFYFPRDFDLERPPREGYA 101
+ F++Q H +QE++N KF +L + Y + + EGYA
Sbjct: 31 EVASFISQHHLSQEQINLSLSKFNQFLVERQKYQLKDPSYIAKGYQPILAMNEGYA 86
>pdb|3NB0|A Chain A, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|B Chain B, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|C Chain C, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3NB0|D Chain D, Glucose-6-Phosphate Activated Form Of Yeast Glycogen
Synthase
pdb|3RT1|A Chain A, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|B Chain B, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|C Chain C, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
pdb|3RT1|D Chain D, Maltodextarn Bound Activated State Form Of Yeast Glycogen
Synthase Isoform 2
Length = 725
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELI 145
AP+ + + D+ G NE W + G P P+ F ND ++
Sbjct: 120 APKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDFETNDAIL 162
>pdb|3NAZ|A Chain A, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|B Chain B, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|C Chain C, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|D Chain D, Basal State Form Of Yeast Glycogen Synthase
pdb|3NCH|A Chain A, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|B Chain B, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|C Chain C, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|D Chain D, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3O3C|A Chain A, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|B Chain B, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|C Chain C, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|D Chain D, Glycogen Synthase Basal State Udp Complex
pdb|3RSZ|A Chain A, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|B Chain B, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|C Chain C, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|D Chain D, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
Length = 725
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELI 145
AP+ + + D+ G NE W + G P P+ F ND ++
Sbjct: 120 APKVILFDLDSVRGYSNEWKGDLWSLVGIPSPENDFETNDAIL 162
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 22 FHPDKSFYFPRDFDLERPPREGYAQAPRFLNQEHDTQEKLNPE 64
P SF P+D+ L + +G AP F H+ + L P+
Sbjct: 296 IQPTISFQTPKDYTLTKLHEKGQKVAPDFEYSSHNNNQWLEPD 338
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 24/112 (21%)
Query: 84 FYFPRDFDLERPPREGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDE 143
+Y PR LE P L EH ++ ++ G P P + + N +
Sbjct: 6 YYPPRVVSLEEPE----------LRLEHCIEFVVR-----------GNPPPTLHWLHNGQ 44
Query: 144 LIEMGGRYDSSYTRNGQAT---LFINKMLDRDVGMYEALASNEHGTARQRVS 192
+ Y + G+ + L NK + G Y +A N GTA Q ++
Sbjct: 45 PLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTIN 96
>pdb|2OV1|A Chain A, Crystal Structure Of Apo Form Of Znua With Flexible Loop
Deletion
pdb|2OV3|A Chain A, Crystal Structure Of 138-173 Znua Deletion Mutant Plus
Zinc Bound
Length = 260
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 3 EKLNPERPKFEPYLPPG--VPFHPDKSFYFPRDFDLERPPREGYAQAPRF--LNQEHDTQ 58
E+LN E + LP + FHP + YF RD++L + P E Q P L Q DT
Sbjct: 143 ERLNQELGQILQPLPQRKFIVFHPSWA-YFARDYNLVQIPIEVEGQEPSAQELKQLIDTA 201
Query: 59 EKLN 62
++ N
Sbjct: 202 KENN 205
>pdb|1PQ4|A Chain A, Crystal Structure Of Znua
pdb|1PQ4|B Chain B, Crystal Structure Of Znua
Length = 291
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 3 EKLNPERPKFEPYLPPG--VPFHPDKSFYFPRDFDLERPPREGYAQAPRF--LNQEHDTQ 58
E+LN E + LP + FHP + YF RD++L + P E Q P L Q DT
Sbjct: 175 ERLNQELGQILQPLPQRKFIVFHPSWA-YFARDYNLVQIPIEVEGQEPSAQELKQLIDTA 233
Query: 59 EKLN 62
++ N
Sbjct: 234 KENN 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,585,225
Number of Sequences: 62578
Number of extensions: 351369
Number of successful extensions: 693
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 85
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)