Query psy5280
Match_columns 202
No_of_seqs 274 out of 1449
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 22:32:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05762 Ig8_MLCK Eighth immuno 99.8 4.3E-19 9.3E-24 125.3 13.4 93 104-198 1-93 (98)
2 cd05851 Ig3_Contactin-1 Third 99.8 5E-19 1.1E-23 122.5 10.9 88 103-196 1-88 (88)
3 cd05737 Ig_Myomesin_like_C C-t 99.8 4.4E-18 9.6E-23 118.6 12.9 90 106-195 3-92 (92)
4 cd05892 Ig_Myotilin_C C-termin 99.8 2.9E-18 6.4E-23 115.2 10.6 74 122-195 1-75 (75)
5 cd05747 Ig5_Titin_like M5, fif 99.8 7.8E-18 1.7E-22 117.3 12.5 91 102-194 2-92 (92)
6 cd05852 Ig5_Contactin-1 Fifth 99.8 3.6E-18 7.7E-23 114.2 9.6 73 119-195 1-73 (73)
7 cd05745 Ig3_Peroxidasin Third 99.8 4.7E-18 1E-22 113.7 9.3 74 118-195 1-74 (74)
8 PF07679 I-set: Immunoglobulin 99.8 2.3E-17 5.1E-22 113.7 12.9 90 104-195 1-90 (90)
9 cd05893 Ig_Palladin_C C-termin 99.8 1.4E-17 3E-22 111.9 10.5 74 122-195 1-75 (75)
10 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 5.4E-17 1.2E-21 111.8 13.4 82 113-195 4-86 (86)
11 cd05728 Ig4_Contactin-2-like F 99.7 1.4E-17 3E-22 114.4 10.3 84 106-195 2-85 (85)
12 KOG3513|consensus 99.7 1.2E-17 2.5E-22 155.3 12.1 187 8-198 268-516 (1051)
13 cd05744 Ig_Myotilin_C_like Imm 99.7 3.5E-17 7.7E-22 109.9 10.9 74 122-195 1-75 (75)
14 cd04968 Ig3_Contactin_like Thi 99.7 5.4E-17 1.2E-21 112.0 12.1 88 103-196 1-88 (88)
15 cd05723 Ig4_Neogenin Fourth im 99.7 3.5E-17 7.5E-22 108.7 9.8 71 121-195 1-71 (71)
16 cd04972 Ig_TrkABC_d4 Fourth do 99.7 1.5E-16 3.2E-21 110.3 12.7 88 106-195 3-90 (90)
17 cd04975 Ig4_SCFR_like Fourth i 99.7 8.9E-17 1.9E-21 114.1 11.7 84 113-196 12-100 (101)
18 cd05748 Ig_Titin_like Immunogl 99.7 2.1E-16 4.6E-21 105.4 11.6 74 121-195 1-74 (74)
19 cd05891 Ig_M-protein_C C-termi 99.7 2.7E-16 5.8E-21 109.7 12.4 82 114-195 11-92 (92)
20 cd05730 Ig3_NCAM-1_like Third 99.7 2.5E-16 5.5E-21 110.1 12.1 80 115-197 14-94 (95)
21 cd04969 Ig5_Contactin_like Fif 99.7 1.2E-16 2.6E-21 106.5 10.0 73 119-195 1-73 (73)
22 cd05859 Ig4_PDGFR-alpha Fourth 99.7 1.9E-16 4.1E-21 112.4 11.4 83 114-196 13-100 (101)
23 cd05857 Ig2_FGFR Second immuno 99.7 2.9E-16 6.4E-21 107.3 11.5 81 115-195 5-85 (85)
24 cd05865 Ig1_NCAM-1 First immun 99.7 2.2E-16 4.7E-21 111.1 11.0 85 110-195 7-95 (96)
25 cd05870 Ig5_NCAM-2 Fifth immun 99.7 3.2E-16 7E-21 110.4 11.9 90 103-195 2-98 (98)
26 cd05867 Ig4_L1-CAM_like Fourth 99.7 2.5E-16 5.4E-21 105.8 10.8 72 119-195 1-75 (76)
27 cd05868 Ig4_NrCAM Fourth immun 99.7 2.2E-16 4.9E-21 106.2 10.3 76 119-196 1-76 (76)
28 cd05735 Ig8_DSCAM Eight immuno 99.7 4.8E-16 1E-20 107.5 11.9 81 119-199 1-85 (88)
29 KOG3513|consensus 99.7 3.6E-16 7.8E-21 145.6 14.5 136 57-198 261-423 (1051)
30 cd05746 Ig4_Peroxidasin Fourth 99.7 1.5E-16 3.3E-21 104.9 8.6 69 122-194 1-69 (69)
31 cd07693 Ig1_Robo First immunog 99.7 6.4E-16 1.4E-20 108.1 11.7 92 103-195 1-99 (100)
32 cd05869 Ig5_NCAM-1 Fifth immun 99.7 1.1E-15 2.5E-20 107.4 12.9 91 103-195 2-97 (97)
33 cd05726 Ig4_Robo Fhird immunog 99.7 3.3E-16 7.1E-21 108.6 9.6 80 119-202 1-88 (90)
34 cd05732 Ig5_NCAM-1_like Fifth 99.7 1.1E-15 2.4E-20 106.8 11.9 90 103-195 2-96 (96)
35 cd05848 Ig1_Contactin-5 First 99.7 8.3E-16 1.8E-20 107.6 11.0 82 104-189 2-87 (94)
36 cd05743 Ig_Perlecan_D2_like Im 99.7 1.2E-15 2.5E-20 103.1 11.0 76 119-195 1-76 (78)
37 cd05849 Ig1_Contactin-1 First 99.7 8.8E-16 1.9E-20 107.4 10.6 85 103-193 1-91 (93)
38 cd05876 Ig3_L1-CAM Third immun 99.7 5.4E-16 1.2E-20 102.9 9.0 71 122-196 1-71 (71)
39 cd05863 Ig2_VEGFR-3 Second imm 99.7 5.9E-16 1.3E-20 101.7 9.0 66 122-196 1-66 (67)
40 cd04978 Ig4_L1-NrCAM_like Four 99.7 9E-16 1.9E-20 102.7 10.1 76 119-196 1-76 (76)
41 cd05739 Ig3_RPTP_IIa_LAR_like 99.7 1.1E-15 2.4E-20 101.0 10.0 69 119-194 1-69 (69)
42 cd05864 Ig2_VEGFR-2 Second imm 99.7 5.8E-16 1.3E-20 102.6 8.6 68 122-195 1-68 (70)
43 cd05854 Ig6_Contactin-2 Sixth 99.7 1.9E-15 4E-20 103.9 11.4 79 120-198 1-84 (85)
44 cd04976 Ig2_VEGFR Second immun 99.7 1E-15 2.2E-20 101.6 9.3 70 122-196 1-70 (71)
45 cd05855 Ig_TrkB_d5 Fifth domai 99.6 2.2E-15 4.7E-20 102.1 10.5 72 123-194 2-77 (79)
46 cd05850 Ig1_Contactin-2 First 99.6 4.1E-15 8.8E-20 104.1 12.0 85 103-193 1-92 (94)
47 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 3.6E-15 7.8E-20 101.6 11.2 73 123-195 2-80 (81)
48 cd05764 Ig_2 Subgroup of the i 99.6 1.8E-15 4E-20 100.8 9.4 73 119-195 1-74 (74)
49 cd05722 Ig1_Neogenin First imm 99.6 2.6E-15 5.6E-20 105.0 10.4 85 106-195 2-95 (95)
50 cd05866 Ig1_NCAM-2 First immun 99.6 7.4E-15 1.6E-19 102.5 12.6 85 108-195 5-91 (92)
51 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 2.4E-15 5.3E-20 100.5 9.6 70 122-195 1-73 (74)
52 cd05763 Ig_1 Subgroup of the i 99.6 1.4E-15 3E-20 101.8 8.4 72 122-196 1-75 (75)
53 KOG4221|consensus 99.6 1.6E-15 3.5E-20 141.4 11.2 186 8-198 68-328 (1381)
54 cd05725 Ig3_Robo Third immunog 99.6 2.1E-15 4.6E-20 99.3 7.8 69 122-195 1-69 (69)
55 cd05731 Ig3_L1-CAM_like Third 99.6 4.2E-15 9.2E-20 98.0 9.2 70 122-195 1-70 (71)
56 cd05760 Ig2_PTK7 Second immuno 99.6 6.6E-15 1.4E-19 99.2 10.1 71 122-195 1-72 (77)
57 cd05724 Ig2_Robo Second immuno 99.6 7E-15 1.5E-19 100.5 10.2 81 110-195 3-86 (86)
58 cd05773 Ig8_hNephrin_like Eigh 99.6 1.5E-14 3.2E-19 104.0 12.3 96 103-198 4-107 (109)
59 cd05856 Ig2_FGFRL1-like Second 99.6 7.6E-15 1.6E-19 99.2 10.1 78 115-195 5-82 (82)
60 cd04970 Ig6_Contactin_like Six 99.6 9.2E-15 2E-19 100.2 10.5 79 120-198 1-84 (85)
61 cd04973 Ig1_FGFR First immunog 99.6 5.6E-15 1.2E-19 100.0 9.1 75 115-195 5-79 (79)
62 cd05749 Ig2_Tyro3_like Second 99.6 5.6E-15 1.2E-19 100.7 9.0 78 106-193 1-80 (81)
63 cd05758 Ig5_KIRREL3-like Fifth 99.6 2E-14 4.4E-19 101.1 12.0 89 103-193 2-97 (98)
64 cd05858 Ig3_FGFR-2 Third immun 99.6 1E-14 2.2E-19 101.1 9.8 78 119-196 1-90 (90)
65 cd04974 Ig3_FGFR Third immunog 99.6 7.7E-15 1.7E-19 101.8 9.2 78 119-196 1-90 (90)
66 cd05740 Ig_CEACAM_D4 Fourth im 99.6 1.8E-14 3.9E-19 100.3 10.7 78 112-195 12-90 (91)
67 cd05853 Ig6_Contactin-4 Sixth 99.6 1.3E-14 2.8E-19 99.7 9.1 79 120-198 1-84 (85)
68 cd04977 Ig1_NCAM-1_like First 99.6 5.3E-14 1.1E-18 98.0 12.0 85 109-195 6-92 (92)
69 cd05765 Ig_3 Subgroup of the i 99.6 1.5E-14 3.3E-19 97.7 8.9 73 119-195 1-81 (81)
70 cd05736 Ig2_Follistatin_like S 99.6 2.7E-14 5.8E-19 95.7 9.6 74 122-196 1-74 (76)
71 KOG4194|consensus 99.6 1.7E-14 3.7E-19 127.3 9.8 153 41-197 606-797 (873)
72 cd07702 Ig2_VEGFR-1 Second imm 99.6 3.2E-14 6.9E-19 94.7 8.6 68 122-194 1-69 (72)
73 cd04967 Ig1_Contactin First Ig 99.5 1E-13 2.2E-18 96.2 10.9 81 104-190 2-88 (91)
74 KOG4222|consensus 99.5 2.5E-14 5.4E-19 132.9 9.2 191 2-198 52-315 (1281)
75 cd05750 Ig_Pro_neuregulin Immu 99.5 6.6E-14 1.4E-18 93.2 8.7 71 122-192 1-74 (75)
76 cd05756 Ig1_IL1R_like First im 99.5 5.2E-14 1.1E-18 98.6 7.9 76 115-195 10-94 (94)
77 KOG4221|consensus 99.5 7.8E-15 1.7E-19 136.9 4.7 135 59-198 259-418 (1381)
78 cd05729 Ig2_FGFR_like Second i 99.5 3.7E-13 8E-18 91.3 11.5 81 115-195 5-85 (85)
79 KOG4194|consensus 99.5 7.3E-14 1.6E-18 123.4 9.7 94 101-198 610-706 (873)
80 cd05734 Ig7_DSCAM Seventh immu 99.5 1E-13 2.2E-18 93.7 8.2 70 122-195 1-79 (79)
81 cd05733 Ig6_L1-CAM_like Sixth 99.5 1E-13 2.3E-18 93.3 7.5 65 122-189 1-71 (77)
82 cd05874 Ig6_NrCAM Sixth immuno 99.5 1.9E-13 4.2E-18 92.1 8.2 66 122-190 1-72 (77)
83 cd05875 Ig6_hNeurofascin_like 99.5 4.1E-13 8.8E-18 90.5 9.1 66 122-190 1-72 (77)
84 cd07701 Ig1_Necl-3 First (N-te 99.4 1.2E-12 2.6E-17 91.8 10.3 83 111-195 5-95 (95)
85 cd05742 Ig1_VEGFR_like First i 99.4 1E-12 2.3E-17 89.7 8.4 77 119-195 1-83 (84)
86 cd05754 Ig3_Perlecan_like Thir 99.4 1.5E-12 3.2E-17 89.1 8.6 79 107-193 5-84 (85)
87 KOG4222|consensus 99.4 6E-13 1.3E-17 123.9 8.7 153 41-198 25-225 (1281)
88 cd05882 Ig1_Necl-1 First (N-te 99.4 5.3E-12 1.2E-16 88.5 11.5 82 112-195 6-95 (95)
89 cd05898 Ig5_KIRREL3 Fifth immu 99.4 5.8E-12 1.3E-16 88.7 11.6 89 103-193 2-97 (98)
90 cd05873 Ig_Sema4D_like Immunog 99.4 2.7E-12 5.9E-17 88.5 9.4 78 110-194 3-84 (87)
91 cd05895 Ig_Pro_neuregulin-1 Im 99.4 3.7E-12 7.9E-17 85.3 9.1 70 122-192 1-75 (76)
92 cd05752 Ig1_FcgammaR_like Frst 99.3 4.2E-12 9.1E-17 85.8 7.3 76 105-195 2-78 (78)
93 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 2.8E-11 6.1E-16 82.8 11.5 77 119-196 1-83 (84)
94 cd05757 Ig2_IL1R_like Second i 99.3 1.1E-11 2.4E-16 86.4 9.0 76 114-194 5-85 (92)
95 cd04979 Ig_Semaphorin_C Immuno 99.3 1.2E-11 2.5E-16 85.4 8.8 77 115-197 7-88 (89)
96 cd05845 Ig2_L1-CAM_like Second 99.3 1.1E-11 2.3E-16 86.8 6.6 80 104-187 3-85 (95)
97 cd05717 Ig1_Necl-1-3_like Firs 99.2 1.1E-10 2.3E-15 81.5 10.3 80 115-195 8-95 (95)
98 smart00408 IGc2 Immunoglobulin 99.2 5.8E-11 1.3E-15 74.8 8.2 63 118-185 1-63 (63)
99 PHA02826 IL-1 receptor-like pr 99.2 1.4E-10 3.1E-15 93.6 12.0 67 115-184 140-211 (227)
100 cd05871 Ig_Semaphorin_classIII 99.2 9.7E-11 2.1E-15 81.4 9.3 78 114-197 6-90 (91)
101 smart00409 IG Immunoglobulin. 99.2 5.2E-10 1.1E-14 74.3 12.4 80 115-195 5-85 (86)
102 smart00410 IG_like Immunoglobu 99.2 5.2E-10 1.1E-14 74.3 12.4 80 115-195 5-85 (86)
103 cd05727 Ig2_Contactin-2-like S 99.2 2.7E-11 5.9E-16 84.9 5.7 76 109-187 8-86 (96)
104 PHA02785 IL-beta-binding prote 99.2 5.3E-10 1.2E-14 95.0 14.6 79 108-187 225-318 (326)
105 cd05860 Ig4_SCFR Fourth immuno 99.2 3.8E-10 8.2E-15 79.5 10.8 83 114-196 13-100 (101)
106 cd05862 Ig1_VEGFR First immuno 99.1 5.4E-10 1.2E-14 76.8 9.1 79 119-197 1-86 (86)
107 cd05753 Ig2_FcgammaR_like Seco 99.1 3.5E-10 7.6E-15 77.2 7.7 65 115-188 10-75 (83)
108 PF13895 Ig_2: Immunoglobulin 99.1 1.3E-09 2.7E-14 72.6 9.8 70 115-195 10-80 (80)
109 PHA02785 IL-beta-binding prote 99.1 9.4E-10 2E-14 93.5 10.6 120 62-189 56-205 (326)
110 cd07690 Ig1_CD4 First immunogl 99.0 1E-09 2.2E-14 76.7 7.5 74 115-188 3-92 (94)
111 cd05881 Ig1_Necl-2 First (N-te 99.0 1.1E-08 2.4E-13 71.6 10.9 68 115-182 8-83 (95)
112 PF00047 ig: Immunoglobulin do 99.0 1.1E-09 2.4E-14 70.4 5.4 62 119-180 1-64 (64)
113 cd05897 Ig2_IL1R2_like Second 99.0 3.1E-09 6.8E-14 74.4 7.5 70 115-187 6-81 (95)
114 cd05896 Ig1_IL1RAPL-1_like Fir 99.0 3.8E-09 8.2E-14 74.7 7.8 76 115-195 11-104 (104)
115 cd05759 Ig2_KIRREL3-like Secon 98.9 1.3E-08 2.9E-13 68.9 8.8 72 122-194 2-79 (82)
116 PHA02826 IL-1 receptor-like pr 98.9 1.1E-08 2.4E-13 82.7 8.5 83 115-197 33-134 (227)
117 cd05872 Ig_Sema4B_like Immunog 98.8 1.8E-08 4E-13 69.0 7.6 73 115-194 7-79 (85)
118 cd05885 Ig2_Necl-4 Second immu 98.8 4.1E-08 9E-13 66.5 8.5 65 122-187 2-69 (80)
119 PF13927 Ig_3: Immunoglobulin 98.8 1.1E-08 2.4E-13 66.9 4.5 73 104-182 2-75 (75)
120 cd05877 Ig_LP_like Immunoglobu 98.8 7.4E-08 1.6E-12 68.3 9.0 80 118-197 1-104 (106)
121 cd04983 IgV_TCR_alpha_like Imm 98.7 1E-07 2.2E-12 67.8 8.5 71 115-185 9-94 (109)
122 cd05714 Ig_CSPGs_LP Immunoglob 98.7 1.9E-07 4.2E-12 66.2 9.5 80 118-197 1-104 (106)
123 cd05899 IgV_TCR_beta Immunoglo 98.7 1.1E-07 2.3E-12 68.1 8.0 70 115-185 9-96 (110)
124 cd05713 Ig_MOG_like Immunoglob 98.7 2.8E-07 6E-12 64.6 9.7 77 119-195 1-99 (100)
125 cd05774 Ig_CEACAM_D1 First imm 98.6 2.2E-07 4.7E-12 66.3 8.3 75 115-195 9-105 (105)
126 cd00099 IgV Immunoglobulin var 98.6 1.9E-07 4.2E-12 65.7 7.8 71 115-185 2-91 (105)
127 cd05718 Ig1_PVR_like First imm 98.6 3.4E-07 7.5E-12 63.7 8.8 77 120-196 1-98 (98)
128 cd04982 IgV_TCR_gamma Immunogl 98.6 5.5E-07 1.2E-11 64.9 8.7 68 115-182 9-98 (116)
129 cd05900 Ig_Aggrecan Immunoglob 98.6 5.8E-07 1.3E-11 64.8 8.8 80 118-197 1-110 (112)
130 cd05741 Ig_CEACAM_D1_like Firs 98.5 4.8E-07 1E-11 62.2 7.7 71 119-193 1-90 (92)
131 cd05751 Ig1_LILRB1_like First 98.5 4E-07 8.6E-12 63.0 6.3 64 115-183 12-75 (91)
132 cd05879 Ig_P0 Immunoglobulin ( 98.5 2.6E-06 5.7E-11 61.8 10.1 77 115-191 9-110 (116)
133 cd05878 Ig_Aggrecan_like Immun 98.5 2.7E-06 5.9E-11 61.0 10.0 79 119-197 2-108 (110)
134 cd04980 IgV_L_kappa Immunoglob 98.4 1.5E-06 3.2E-11 61.7 8.3 72 110-183 7-93 (106)
135 cd05888 Ig1_Nectin-4_like Frst 98.3 4.1E-06 9E-11 59.0 8.6 76 121-196 2-100 (100)
136 cd05761 Ig2_Necl-1-4_like Seco 98.3 5.6E-06 1.2E-10 56.1 8.8 65 122-187 2-71 (82)
137 cd00098 IgC Immunoglobulin Con 98.3 2.3E-06 5E-11 59.1 7.0 70 117-186 11-87 (95)
138 cd05886 Ig1_Nectin-1_like Firs 98.3 9.8E-06 2.1E-10 57.1 9.6 76 121-196 2-99 (99)
139 cd05715 Ig_P0-like Immunoglobu 98.3 6.1E-06 1.3E-10 59.6 8.7 76 110-186 5-105 (116)
140 cd04984 IgV_L_lambda Immunoglo 98.3 3.3E-06 7.1E-11 59.0 7.0 68 115-183 2-85 (98)
141 cd05775 Ig_SLAM-CD84_like_N N- 98.3 3.7E-06 7.9E-11 58.9 7.2 76 117-195 2-96 (97)
142 cd05846 Ig1_MRC-OX-2_like Firs 98.3 5.8E-06 1.3E-10 57.7 8.1 77 119-195 1-96 (97)
143 cd05880 Ig_EVA1 Immunoglobulin 98.3 9.8E-06 2.1E-10 58.6 9.4 72 115-186 9-104 (115)
144 PF07686 V-set: Immunoglobulin 98.3 2E-05 4.3E-10 55.5 10.6 83 113-195 10-114 (114)
145 cd05887 Ig1_Nectin-3_like Firs 98.2 1.1E-05 2.4E-10 56.6 8.8 77 120-196 1-96 (96)
146 PHA02987 Ig domain OX-2-like p 98.2 1E-05 2.2E-10 62.8 9.1 84 115-198 26-124 (189)
147 cd05901 Ig_Versican Immunoglob 98.2 3.6E-05 7.9E-10 55.8 10.6 79 119-197 2-115 (117)
148 cd07706 IgV_TCR_delta Immunogl 98.2 2.5E-05 5.5E-10 56.2 9.9 68 115-182 10-93 (116)
149 cd07705 Ig2_Necl-1 Second immu 98.2 2.4E-05 5.3E-10 53.2 9.2 65 122-187 2-72 (83)
150 cd05883 Ig2_Necl-2 Second immu 98.2 1.1E-05 2.5E-10 54.8 7.3 75 122-196 2-80 (82)
151 cd00096 Ig Immunoglobulin doma 98.1 1.7E-05 3.7E-10 49.5 7.4 65 122-186 1-68 (74)
152 cd05902 Ig_Neurocan Immunoglob 98.1 3.2E-05 7E-10 55.5 9.6 79 119-197 2-108 (110)
153 cd05755 Ig2_ICAM-1_like Second 98.1 2.3E-05 4.9E-10 55.3 8.4 72 115-187 12-88 (100)
154 cd05716 Ig_pIgR Immunoglobulin 98.1 1.9E-05 4E-10 55.0 7.7 70 115-184 3-87 (98)
155 cd07694 Ig2_CD4 Second immunog 98.1 3.9E-05 8.4E-10 52.5 8.6 76 115-197 10-87 (88)
156 cd05884 Ig2_Necl-3 Second immu 98.0 4.3E-05 9.3E-10 52.0 7.6 65 122-186 2-71 (83)
157 cd07700 IgV_CD8_beta Immunoglo 98.0 4.4E-05 9.5E-10 54.3 7.4 68 115-182 2-93 (107)
158 cd05712 Ig_Siglec_N Immunoglob 98.0 9.7E-05 2.1E-09 53.5 9.3 73 110-183 6-102 (119)
159 cd05720 Ig_CD8_alpha Immunoglo 97.9 4.4E-05 9.6E-10 54.0 6.5 67 115-182 2-90 (104)
160 cd05771 IgC_Tapasin_R Tapasin- 97.9 0.00022 4.7E-09 53.0 10.2 82 103-185 38-132 (139)
161 cd05711 Ig_FcalphaRI Immunoglo 97.8 7.3E-05 1.6E-09 52.0 6.6 65 115-181 11-75 (94)
162 cd04981 IgV_H Immunoglobulin ( 97.7 0.0002 4.2E-09 51.9 7.9 72 110-182 4-97 (117)
163 cd05889 Ig1_DNAM-1_like First 97.7 0.00034 7.3E-09 49.0 8.5 74 120-193 1-93 (96)
164 PF08205 C2-set_2: CD80-like C 97.7 0.00056 1.2E-08 46.5 9.4 69 119-187 14-87 (89)
165 smart00407 IGc1 Immunoglobulin 97.7 0.00061 1.3E-08 45.1 9.1 63 122-184 2-71 (75)
166 smart00406 IGv Immunoglobulin 97.6 0.00027 5.8E-09 46.6 6.4 59 121-179 1-80 (81)
167 cd07698 IgC_MHC_I_alpha3 Class 97.6 0.0011 2.5E-08 45.7 9.6 67 119-185 14-84 (93)
168 cd05768 IgC_CH4 CH4 domain (fo 97.4 0.00072 1.6E-08 47.8 7.2 69 117-185 14-92 (102)
169 cd07699 IgC_L Immunoglobulin C 97.3 0.0016 3.5E-08 45.8 7.4 69 117-185 15-90 (100)
170 cd05847 IgC_CH2_IgE CH2 domain 97.3 0.0031 6.7E-08 43.9 8.8 71 118-188 13-90 (94)
171 cd05772 IgC_SIRP Signal-regula 97.3 0.0035 7.6E-08 45.0 9.1 68 116-185 18-93 (111)
172 cd05719 Ig2_PVR_like Second im 97.3 0.0023 5E-08 44.6 7.8 65 120-187 16-85 (95)
173 cd07703 Ig2_Nectin-2_like Seco 97.2 0.0023 4.9E-08 44.7 7.4 62 120-187 16-85 (95)
174 cd07696 IgC_CH3 CH3 domain (th 97.1 0.0027 5.9E-08 44.3 7.3 69 116-185 11-87 (96)
175 cd05770 IgC_beta2m Class I maj 97.1 0.0055 1.2E-07 42.6 8.0 66 118-184 14-83 (93)
176 PHA03376 BARF1; Provisional 97.0 0.0055 1.2E-07 47.9 8.6 85 115-200 22-134 (221)
177 cd07692 Ig_CD3_epsilon Immunog 96.9 0.0039 8.5E-08 40.2 5.9 54 116-184 4-57 (65)
178 KOG4597|consensus 96.9 0.001 2.2E-08 58.2 4.0 87 105-196 198-292 (560)
179 PF07654 C1-set: Immunoglobuli 96.9 0.014 3.1E-07 39.1 9.0 64 119-185 8-78 (83)
180 cd05766 IgC_MHC_II_beta Class 96.9 0.0076 1.7E-07 41.8 7.7 67 117-186 12-85 (94)
181 cd07691 Ig_CD3_gamma_delta Imm 96.8 0.0033 7.2E-08 40.9 4.8 49 119-182 6-54 (69)
182 cd05769 IgC_TCR_beta T cell re 96.8 0.012 2.6E-07 42.5 8.3 74 118-191 17-99 (115)
183 cd05767 IgC_MHC_II_alpha Class 96.7 0.017 3.6E-07 40.2 8.5 64 118-184 14-84 (94)
184 PHA02633 hypothetical protein; 96.6 0.0074 1.6E-07 38.4 5.4 39 160-198 17-55 (63)
185 cd07697 IgC_TCR_gamma T cell r 96.4 0.021 4.7E-07 39.8 7.4 64 118-183 15-84 (96)
186 cd05721 IgV_CTLA-4 Immunoglobu 96.3 0.028 6.2E-07 40.5 7.5 66 115-180 9-93 (115)
187 cd04986 IgC_CH2 CH2 domain (se 96.2 0.025 5.5E-07 39.7 6.6 78 105-185 6-90 (99)
188 KOG1480|consensus 96.1 0.0016 3.5E-08 60.1 0.4 78 106-188 132-210 (909)
189 cd07704 Ig2_Nectin-3-4_like Se 96.1 0.067 1.5E-06 37.4 8.3 65 115-185 12-85 (97)
190 KOG3515|consensus 96.0 0.0054 1.2E-07 57.1 3.2 70 111-187 15-85 (741)
191 PF08204 V-set_CD47: CD47 immu 95.8 0.031 6.6E-07 41.2 5.8 81 115-196 23-120 (130)
192 cd04985 IgC_CH1 CH1 domain (fi 95.7 0.2 4.4E-06 34.7 9.4 66 118-184 15-87 (95)
193 PF07354 Sp38: Zona-pellucida- 95.3 0.028 6E-07 46.0 4.6 49 132-184 11-60 (271)
194 cd05863 Ig2_VEGFR-3 Second imm 95.3 0.011 2.4E-07 38.4 1.7 23 57-79 3-25 (67)
195 cd05762 Ig8_MLCK Eighth immuno 95.1 0.025 5.4E-07 39.4 3.3 26 57-82 20-45 (98)
196 KOG3515|consensus 95.0 0.092 2E-06 49.1 7.4 82 115-197 108-202 (741)
197 cd05848 Ig1_Contactin-5 First 94.6 0.04 8.7E-07 38.0 3.2 25 56-80 23-47 (94)
198 cd07689 Ig2_VCAM-1 Second immu 94.3 0.21 4.6E-06 35.0 6.3 70 115-185 11-87 (99)
199 cd05864 Ig2_VEGFR-2 Second imm 94.2 0.025 5.5E-07 36.9 1.4 25 57-81 3-27 (70)
200 cd07702 Ig2_VEGFR-1 Second imm 94.1 0.03 6.4E-07 36.9 1.5 25 57-81 3-27 (72)
201 cd04971 Ig_TrKABC_d5 Fifth dom 94.0 0.05 1.1E-06 36.5 2.6 26 57-82 3-28 (81)
202 cd05859 Ig4_PDGFR-alpha Fourth 93.9 0.036 7.8E-07 38.9 1.8 27 56-82 22-48 (101)
203 cd05855 Ig_TrkB_d5 Fifth domai 93.8 0.06 1.3E-06 36.1 2.7 25 57-81 3-27 (79)
204 cd05851 Ig3_Contactin-1 Third 93.8 0.075 1.6E-06 36.1 3.2 24 57-80 21-44 (88)
205 PF11465 Receptor_2B4: Natural 93.7 0.16 3.6E-06 36.0 4.7 57 136-195 46-106 (108)
206 cd05747 Ig5_Titin_like M5, fif 93.5 0.1 2.2E-06 35.6 3.5 25 57-81 23-47 (92)
207 cd04976 Ig2_VEGFR Second immun 93.4 0.05 1.1E-06 35.3 1.7 25 57-81 3-27 (71)
208 cd07693 Ig1_Robo First immunog 93.3 0.096 2.1E-06 35.6 3.1 24 57-80 21-44 (100)
209 cd05850 Ig1_Contactin-2 First 93.3 0.1 2.2E-06 35.9 3.2 23 57-79 24-46 (94)
210 cd05893 Ig_Palladin_C C-termin 93.0 0.078 1.7E-06 35.0 2.2 25 57-81 3-27 (75)
211 cd05892 Ig_Myotilin_C C-termin 92.7 0.11 2.3E-06 34.3 2.5 25 57-81 3-27 (75)
212 cd05760 Ig2_PTK7 Second immuno 92.6 0.12 2.6E-06 34.0 2.6 25 57-81 3-27 (77)
213 cd05723 Ig4_Neogenin Fourth im 92.4 0.12 2.7E-06 33.4 2.5 25 57-81 4-28 (71)
214 cd05738 Ig2_RPTP_IIa_LAR_like 92.3 0.12 2.5E-06 33.8 2.3 24 57-80 3-26 (74)
215 cd05744 Ig_Myotilin_C_like Imm 92.3 0.15 3.3E-06 33.4 2.9 24 57-80 3-26 (75)
216 cd05746 Ig4_Peroxidasin Fourth 92.3 0.095 2.1E-06 33.6 1.8 25 57-81 3-27 (69)
217 cd05894 Ig_C5_MyBP-C C5 immuno 92.0 0.17 3.8E-06 34.1 2.9 25 56-80 14-38 (86)
218 PHA02982 hypothetical protein; 91.9 0.68 1.5E-05 36.9 6.4 72 115-187 35-126 (251)
219 PF05790 C2-set: Immunoglobuli 91.5 2.3 5.1E-05 28.5 8.0 35 162-196 44-79 (80)
220 cd05868 Ig4_NrCAM Fourth immun 91.2 0.14 3.1E-06 33.6 1.9 25 56-80 5-29 (76)
221 cd05857 Ig2_FGFR Second immuno 91.1 0.25 5.3E-06 32.8 3.0 26 56-81 13-38 (85)
222 cd05748 Ig_Titin_like Immunogl 91.1 0.23 5E-06 32.1 2.7 25 57-81 4-28 (74)
223 cd05852 Ig5_Contactin-1 Fifth 90.9 0.2 4.3E-06 32.8 2.3 26 56-81 5-30 (73)
224 cd05867 Ig4_L1-CAM_like Fourth 90.5 0.24 5.2E-06 32.3 2.4 24 57-80 6-29 (76)
225 cd05849 Ig1_Contactin-1 First 90.4 0.36 7.7E-06 33.2 3.3 24 57-80 24-47 (93)
226 PF06832 BiPBP_C: Penicillin-B 90.3 4.1 8.9E-05 27.5 9.2 75 102-189 9-86 (89)
227 cd05745 Ig3_Peroxidasin Third 90.2 0.2 4.3E-06 32.6 1.8 26 56-81 6-31 (74)
228 cd04967 Ig1_Contactin First Ig 90.0 0.4 8.8E-06 32.4 3.3 23 57-79 24-46 (91)
229 cd05736 Ig2_Follistatin_like S 89.9 0.33 7.2E-06 31.5 2.7 25 57-81 3-27 (76)
230 cd05733 Ig6_L1-CAM_like Sixth 89.8 0.28 6E-06 32.2 2.3 24 57-80 3-26 (77)
231 cd05728 Ig4_Contactin-2-like F 89.5 0.23 5.1E-06 33.2 1.8 26 56-81 18-43 (85)
232 cd05876 Ig3_L1-CAM Third immun 89.4 0.26 5.6E-06 31.8 1.8 24 57-80 3-26 (71)
233 PF07679 I-set: Immunoglobulin 89.0 0.31 6.7E-06 32.5 2.1 25 57-81 20-44 (90)
234 cd05874 Ig6_NrCAM Sixth immuno 88.9 0.34 7.3E-06 32.0 2.2 23 57-79 3-25 (77)
235 cd04975 Ig4_SCFR_like Fourth i 88.9 0.43 9.3E-06 33.4 2.8 25 56-80 22-47 (101)
236 PHA03042 CD47-like protein; Pr 88.9 2.1 4.5E-05 35.5 7.0 73 115-195 27-104 (286)
237 cd05763 Ig_1 Subgroup of the i 88.7 0.41 9E-06 31.0 2.5 21 57-77 3-23 (75)
238 cd05750 Ig_Pro_neuregulin Immu 88.6 0.63 1.4E-05 29.8 3.3 24 57-80 3-27 (75)
239 cd05773 Ig8_hNephrin_like Eigh 88.5 0.48 1E-05 33.5 2.9 27 55-81 26-52 (109)
240 cd05749 Ig2_Tyro3_like Second 88.4 0.39 8.4E-06 32.2 2.2 23 57-79 18-41 (81)
241 cd04978 Ig4_L1-NrCAM_like Four 88.3 0.4 8.6E-06 30.9 2.2 25 56-80 5-29 (76)
242 cd05722 Ig1_Neogenin First imm 87.8 0.51 1.1E-05 32.1 2.6 25 56-80 18-42 (95)
243 cd05875 Ig6_hNeurofascin_like 87.0 0.48 1E-05 31.2 2.0 22 57-78 3-24 (77)
244 cd04969 Ig5_Contactin_like Fif 86.6 0.56 1.2E-05 30.2 2.1 26 57-82 6-31 (73)
245 cd04968 Ig3_Contactin_like Thi 86.3 0.79 1.7E-05 30.7 2.8 24 57-80 21-44 (88)
246 cd05735 Ig8_DSCAM Eight immuno 86.3 0.96 2.1E-05 30.5 3.2 28 56-83 5-32 (88)
247 cd05752 Ig1_FcgammaR_like Frst 86.3 0.73 1.6E-05 30.5 2.6 39 57-96 20-59 (78)
248 cd04973 Ig1_FGFR First immunog 86.1 0.79 1.7E-05 30.1 2.7 24 57-81 14-37 (79)
249 PHA02914 Immunoglobulin-like d 85.8 3.6 7.7E-05 36.0 7.0 82 109-190 269-375 (500)
250 cd04972 Ig_TrkABC_d4 Fourth do 85.6 0.87 1.9E-05 30.6 2.8 24 56-79 19-42 (90)
251 cd05730 Ig3_NCAM-1_like Third 85.5 0.67 1.5E-05 31.5 2.1 26 56-81 22-47 (95)
252 cd05739 Ig3_RPTP_IIa_LAR_like 84.9 0.9 2E-05 29.2 2.5 25 56-80 5-29 (69)
253 cd05725 Ig3_Robo Third immunog 84.7 0.85 1.9E-05 28.9 2.3 22 57-78 3-24 (69)
254 cd05737 Ig_Myomesin_like_C C-t 83.7 1.2 2.6E-05 30.1 2.8 25 57-81 21-45 (92)
255 cd04970 Ig6_Contactin_like Six 82.5 1.4 3E-05 29.2 2.7 25 56-80 4-30 (85)
256 cd05869 Ig5_NCAM-1 Fifth immun 82.3 1.2 2.6E-05 30.5 2.3 24 56-79 21-44 (97)
257 cd05856 Ig2_FGFRL1-like Second 82.2 1 2.2E-05 29.3 1.9 25 56-80 13-37 (82)
258 cd05743 Ig_Perlecan_D2_like Im 81.5 1.2 2.7E-05 29.0 2.1 23 56-78 5-27 (78)
259 PF06328 Lep_receptor_Ig: Ig-l 81.5 14 0.00031 25.2 7.9 62 115-179 14-80 (89)
260 cd05854 Ig6_Contactin-2 Sixth 81.4 1.6 3.5E-05 29.2 2.7 25 56-80 4-30 (85)
261 cd05885 Ig2_Necl-4 Second immu 80.8 2.3 5E-05 28.5 3.2 24 57-80 4-28 (80)
262 cd05858 Ig3_FGFR-2 Third immun 80.5 1.3 2.9E-05 29.8 2.0 26 56-81 5-34 (90)
263 cd05865 Ig1_NCAM-1 First immun 79.7 2 4.4E-05 29.6 2.8 25 56-80 19-45 (96)
264 cd05853 Ig6_Contactin-4 Sixth 79.2 1.4 3E-05 29.9 1.8 23 57-79 5-29 (85)
265 cd04974 Ig3_FGFR Third immunog 78.5 2.9 6.3E-05 28.1 3.2 20 56-75 5-24 (90)
266 PHA02865 MHC-like TNF binding 77.0 8.6 0.00019 33.0 6.2 21 121-141 216-238 (338)
267 cd05724 Ig2_Robo Second immuno 76.1 3 6.5E-05 27.3 2.7 24 57-80 16-40 (86)
268 cd05740 Ig_CEACAM_D4 Fourth im 76.0 3.2 6.9E-05 28.2 2.9 24 56-80 22-45 (91)
269 cd05890 Ig2_Nectin-1_like Seco 75.4 16 0.00034 25.5 6.1 68 120-193 21-96 (98)
270 PHA03052 Hypothetical protein; 75.0 12 0.00026 24.3 5.0 32 114-145 7-41 (69)
271 cd05732 Ig5_NCAM-1_like Fifth 73.6 3.8 8.1E-05 27.6 2.8 23 56-78 20-42 (96)
272 PHA03269 envelope glycoprotein 72.5 63 0.0014 29.3 10.5 38 43-80 333-373 (566)
273 cd05897 Ig2_IL1R2_like Second 70.6 3.8 8.2E-05 28.4 2.2 17 63-79 26-42 (95)
274 cd05727 Ig2_Contactin-2-like S 70.2 2.7 5.8E-05 29.3 1.4 22 57-78 23-45 (96)
275 KOG0613|consensus 69.7 3.1 6.7E-05 41.2 2.1 81 115-196 345-428 (1205)
276 PF06832 BiPBP_C: Penicillin-B 68.4 5.2 0.00011 27.0 2.5 42 28-78 13-54 (89)
277 cd05870 Ig5_NCAM-2 Fifth immun 66.8 6 0.00013 26.9 2.6 18 57-74 21-38 (98)
278 PHA03270 envelope glycoprotein 65.8 77 0.0017 28.2 9.6 36 45-80 227-265 (466)
279 PHA03273 envelope glycoprotein 62.9 1.1E+02 0.0025 27.4 10.2 35 46-80 244-281 (486)
280 cd05891 Ig_M-protein_C C-termi 62.4 8.2 0.00018 26.0 2.6 25 57-81 21-45 (92)
281 KOG1026|consensus 61.0 3.9 8.4E-05 38.8 1.0 71 115-196 203-273 (774)
282 PF02124 Marek_A: Marek's dise 57.8 97 0.0021 24.8 9.3 60 122-181 92-158 (211)
283 PHA03270 envelope glycoprotein 57.7 46 0.001 29.6 6.8 33 115-147 230-265 (466)
284 cd05758 Ig5_KIRREL3-like Fifth 55.7 12 0.00026 25.4 2.5 26 56-81 20-46 (98)
285 PHA03283 envelope glycoprotein 52.5 38 0.00081 30.8 5.6 38 160-197 133-170 (542)
286 PHA03189 UL14 tegument protein 47.1 1.5E+02 0.0033 25.2 8.0 22 167-188 139-160 (348)
287 PHA03286 envelope glycoprotein 46.3 51 0.0011 29.5 5.3 41 160-200 126-167 (492)
288 KOG0613|consensus 45.7 6.7 0.00015 39.0 -0.1 66 120-186 205-270 (1205)
289 COG3878 Uncharacterized protei 43.1 20 0.00044 29.3 2.3 29 24-55 38-66 (261)
290 PHA03271 envelope glycoprotein 41.2 1E+02 0.0022 27.4 6.4 33 115-147 256-291 (490)
291 PHA03240 envelope glycoprotein 40.6 52 0.0011 26.5 4.2 38 158-195 102-143 (258)
292 PF07145 PAM2: Ataxin-2 C-term 40.6 22 0.00048 16.8 1.3 13 2-14 3-15 (18)
293 PHA03269 envelope glycoprotein 40.1 96 0.0021 28.2 6.1 33 115-147 338-373 (566)
294 PF02440 Adeno_E3_CR1: Adenovi 37.5 93 0.002 19.8 4.3 21 116-140 2-22 (63)
295 smart00089 PKD Repeats in poly 36.9 1.1E+02 0.0024 19.4 7.8 63 118-195 13-78 (79)
296 PHA03376 BARF1; Provisional 34.7 28 0.0006 27.6 1.8 24 119-142 139-162 (221)
297 PF02480 Herpes_gE: Alphaherpe 31.1 1.7E+02 0.0036 26.2 6.3 24 159-182 267-290 (439)
298 PF00801 PKD: PKD domain; Int 30.9 1.4E+02 0.0029 18.6 4.5 28 115-142 7-34 (69)
299 PHA03282 envelope glycoprotein 30.1 89 0.0019 28.2 4.3 22 160-181 123-144 (540)
300 PF01688 Herpes_gI: Alphaherpe 29.1 1.6E+02 0.0035 22.5 5.1 35 160-194 123-157 (161)
301 PHA03281 envelope glycoprotein 27.6 1.5E+02 0.0032 27.4 5.3 40 160-199 297-337 (642)
302 PF11141 DUF2914: Protein of u 26.4 1.8E+02 0.0039 18.5 8.1 57 136-195 9-65 (66)
303 PHA03273 envelope glycoprotein 23.5 2.9E+02 0.0062 25.0 6.3 32 115-146 246-280 (486)
304 PHA03291 envelope glycoprotein 23.5 2.5E+02 0.0054 24.5 5.7 38 159-196 127-164 (401)
305 KOG3611|consensus 22.4 1.4E+02 0.0031 28.6 4.5 59 121-184 571-635 (737)
306 PF02480 Herpes_gE: Alphaherpe 21.3 32 0.00069 30.7 0.0 40 160-199 88-128 (439)
307 COG5475 Uncharacterized small 20.3 2.3E+02 0.0051 17.6 4.1 28 162-191 19-46 (60)
308 PHA03271 envelope glycoprotein 20.2 1.1E+02 0.0024 27.2 3.1 45 36-80 244-291 (490)
309 PHA03282 envelope glycoprotein 20.0 2.2E+02 0.0047 25.8 4.8 23 160-182 332-354 (540)
No 1
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.82 E-value=4.3e-19 Score=125.34 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=83.1
Q ss_pred CeEEeccCCeeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy5280 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNE 183 (202)
Q Consensus 104 P~fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 183 (202)
|.|+..+.+. .+..|+.+.|.|.+.|.|.|.+.|+|++..|..+.++.+... ...+.|.|.++..+|+|.|+|.|.|.
T Consensus 1 p~~~~~p~~~-~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~-~~~s~L~I~~~~~~D~G~Ytc~a~N~ 78 (98)
T cd05762 1 PQIIQFPEDM-KVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENT-ENSSKLTITEGQQEHCGCYTLEVENK 78 (98)
T ss_pred CceEECCcCE-EEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEec-CCeeEEEECCCChhhCEEEEEEEEcC
Confidence 6788888888 899999999999999999999999999999987777776332 34678999999999999999999999
Q ss_pred CceEEEEEEEEeecC
Q psy5280 184 HGTARQRVSSGNPAQ 198 (202)
Q Consensus 184 ~G~~~~~~~L~V~~~ 198 (202)
+|...+++.|.|...
T Consensus 79 ~G~~~~~~~l~V~~~ 93 (98)
T cd05762 79 LGSRQAQVNLTVVDK 93 (98)
T ss_pred CCceeEEEEEEEecC
Confidence 999999999999754
No 2
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.80 E-value=5e-19 Score=122.53 Aligned_cols=88 Identities=24% Similarity=0.275 Sum_probs=77.9
Q ss_pred CCeEEeccCCeeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEe
Q psy5280 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASN 182 (202)
Q Consensus 103 ~P~fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 182 (202)
+|.|...+.+. .+.+|+.+.|.|.+.|.|.|.++|+|++..+....++.+ .+..|.|.++..+|+|.|+|.|.|
T Consensus 1 ~p~i~~~~~~~-~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~A~N 74 (88)
T cd05851 1 PADINVKFKDT-YALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM-----SGAVLKIFNIQPEDEGTYECEAEN 74 (88)
T ss_pred CCceEEccccE-EEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec-----CCCEEEECcCChhhCEEEEEEEEc
Confidence 57888888888 899999999999999999999999999988766554443 245899999999999999999999
Q ss_pred CCceEEEEEEEEee
Q psy5280 183 EHGTARQRVSSGNP 196 (202)
Q Consensus 183 ~~G~~~~~~~L~V~ 196 (202)
.+|...+++.|.|+
T Consensus 75 ~~G~~~~~~~l~V~ 88 (88)
T cd05851 75 IKGKDKHQARVYVQ 88 (88)
T ss_pred CCCceEEEEEEEEC
Confidence 99999999999874
No 3
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.79 E-value=4.4e-18 Score=118.57 Aligned_cols=90 Identities=22% Similarity=0.337 Sum_probs=76.3
Q ss_pred EEeccCCeeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCc
Q psy5280 106 FLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185 (202)
Q Consensus 106 fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 185 (202)
++..+.+...+.+|+++.|.|.+.|.|.|.+.|+|++..+....++.+.........|.|.++..+|+|.|+|.|.|..|
T Consensus 3 ~~~~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 3 VVGGLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred eeccCCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCC
Confidence 44444455588999999999999999999999999999998877777643333456899999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy5280 186 TARQRVSSGN 195 (202)
Q Consensus 186 ~~~~~~~L~V 195 (202)
..+..+.|.|
T Consensus 83 ~~~~~~~v~v 92 (92)
T cd05737 83 GETVDVTVSV 92 (92)
T ss_pred cceEEEEEeC
Confidence 9998888765
No 4
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.78 E-value=2.9e-18 Score=115.24 Aligned_cols=74 Identities=26% Similarity=0.361 Sum_probs=63.9
Q ss_pred EEEEEEEEeecCCceEEEeCCEEccc-CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEe
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIEM-GGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~~-~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 195 (202)
+.|+|.+.|.|.|.|.|+|++..|.. ++++.+.....+..+|.|.++..+|+|.|+|.|.|.+|.+++++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57999999999999999999999974 467766433333458999999999999999999999999999999876
No 5
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.77 E-value=7.8e-18 Score=117.28 Aligned_cols=91 Identities=19% Similarity=0.233 Sum_probs=79.8
Q ss_pred CCCeEEeccCCeeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEE
Q psy5280 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALAS 181 (202)
Q Consensus 102 ~~P~fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 181 (202)
.||.|+..+.+. .+.+|+.+.|.|.+.|.|.|.+.|+|++..+..+.++.+.. ....+.|.|.++..+|+|.|+|.|.
T Consensus 2 ~~~~~~~~p~~~-~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~ 79 (92)
T cd05747 2 LPATILTKPRSL-TVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITS-TEYKSTFEISKVQMSDEGNYTVVVE 79 (92)
T ss_pred CCCcccccCccE-EEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEE-cCCeeEEEECCCCcccCEeEEEEEE
Confidence 378899888887 99999999999999999999999999999988777776632 2345789999999999999999999
Q ss_pred eCCceEEEEEEEE
Q psy5280 182 NEHGTARQRVSSG 194 (202)
Q Consensus 182 N~~G~~~~~~~L~ 194 (202)
|.+|..+.++.|+
T Consensus 80 N~~G~~~~~~~l~ 92 (92)
T cd05747 80 NSEGKQEAQFTLT 92 (92)
T ss_pred cCCCCEeEEEEeC
Confidence 9999998888763
No 6
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.77 E-value=3.6e-18 Score=114.23 Aligned_cols=73 Identities=23% Similarity=0.215 Sum_probs=67.0
Q ss_pred CCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEe
Q psy5280 119 NENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 195 (202)
|+++.|.|.+.|.|.|.|+|+|++..+..+.++.+ ..++.|.|.++..+|+|.|+|.|.|..|++++++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~----~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISI----WDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEE----cCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 68899999999999999999999998888788877 44578999999999999999999999999999999875
No 7
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.76 E-value=4.7e-18 Score=113.70 Aligned_cols=74 Identities=22% Similarity=0.291 Sum_probs=66.5
Q ss_pred cCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEe
Q psy5280 118 KNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 118 ~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 195 (202)
+|+++.|.|.+.|.|.|.++|+|++..+....++.+ ...+.|.|.++..+|+|.|+|.|.|.+|..++++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLV----LSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEE----ccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 589999999999999999999999999877666555 34568999999999999999999999999999999876
No 8
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.76 E-value=2.3e-17 Score=113.69 Aligned_cols=90 Identities=29% Similarity=0.423 Sum_probs=82.3
Q ss_pred CeEEeccCCeeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy5280 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNE 183 (202)
Q Consensus 104 P~fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 183 (202)
|.|+..+.+. .+.+|+++.|.|.+.|.|.|.+.|++++..+..+.++.+... ...+.|.|.++..+|+|.|+|.|.|.
T Consensus 1 P~~~~~~~~~-~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 1 PVFTKKPKDV-TVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESD-GGSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp EEEEEESSEE-EEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEE-TTEEEEEESSESGGGSEEEEEEEEET
T ss_pred CEEEEecCCE-EEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecc-cceeEEccCCCChhhCEEEEEEEEEC
Confidence 6788888777 999999999999999999999999999999999888887444 36889999999999999999999999
Q ss_pred CceEEEEEEEEe
Q psy5280 184 HGTARQRVSSGN 195 (202)
Q Consensus 184 ~G~~~~~~~L~V 195 (202)
.|...+.+.|.|
T Consensus 79 ~g~~~~~~~l~V 90 (90)
T PF07679_consen 79 SGEATASVNLTV 90 (90)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCEEEEEEEEEC
Confidence 999999999876
No 9
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.75 E-value=1.4e-17 Score=111.93 Aligned_cols=74 Identities=23% Similarity=0.263 Sum_probs=62.6
Q ss_pred EEEEEEEEeecCCceEEEeCCEEccc-CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEe
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIEM-GGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~~-~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 195 (202)
|.|.|.+.|.|.|.|.|+|++..+.. ..++.+.....+...|.|.++..+|+|.|+|.|.|.+|.+++++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 57999999999999999999999875 456665322223347999999999999999999999999999999876
No 10
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.75 E-value=5.4e-17 Score=111.84 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=71.0
Q ss_pred eeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccC-CcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEE
Q psy5280 113 TQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMG-GRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191 (202)
Q Consensus 113 ~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~-~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 191 (202)
...+.+|+.+.|.|.+.|.|.|.+.|+|++..+..+ .++.+... ...+.|.|.++..+|+|.|+|.|.|..|..++++
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~-~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESY-KDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEc-CCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 347889999999999999999999999999999754 46665322 3467899999999999999999999999999998
Q ss_pred EEEe
Q psy5280 192 SSGN 195 (202)
Q Consensus 192 ~L~V 195 (202)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 8875
No 11
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.75 E-value=1.4e-17 Score=114.44 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=74.9
Q ss_pred EEeccCCeeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCc
Q psy5280 106 FLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185 (202)
Q Consensus 106 fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 185 (202)
|+..+.+. .+..|+.+.|.|.+.|.|.|.+.|+|++..+....++.+ ....|.|.++..+|+|.|+|.|.|..|
T Consensus 2 ~~~~p~~~-~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~N~~G 75 (85)
T cd05728 2 WLKVISDT-EADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV-----EAGDLRITKLSLSDSGMYQCVAENKHG 75 (85)
T ss_pred ccccCCcc-EEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE-----eCCEEEEeeCCHHHCEEEEEEEECCCC
Confidence 66677777 889999999999999999999999999999987666655 245799999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy5280 186 TARQRVSSGN 195 (202)
Q Consensus 186 ~~~~~~~L~V 195 (202)
...+++.|.|
T Consensus 76 ~~~~~~~l~V 85 (85)
T cd05728 76 TIYASAELAV 85 (85)
T ss_pred eEEEEEEEEC
Confidence 9999998875
No 12
>KOG3513|consensus
Probab=99.74 E-value=1.2e-17 Score=155.34 Aligned_cols=187 Identities=19% Similarity=0.234 Sum_probs=138.5
Q ss_pred CCCcccccCCCCCCCCCCCCCC--CCCCCcccC-------------------CCCCCCc---cCCeeeeccceee-----
Q psy5280 8 ERPKFEPYLPPGVPFHPDKSFY--FPRDFDLER-------------------PPREGYA---QAPRFLNQEHDTQ----- 58 (202)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r-------------------~~~~~~~---~~p~f~~~~~~~~----- 58 (202)
-|-|.|.|.+.|-..-++..-+ |=+=|+|+. -.|.++. .+|+|+..++++.
T Consensus 268 ~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs 347 (1051)
T KOG3513|consen 268 NPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGS 347 (1051)
T ss_pred CCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCC
Confidence 3778899999887643322211 333333322 1222222 2799998777643
Q ss_pred -----eeecCCCCCeeeecCCCeecCCCCc---e------eeeccccccCCCCC-CC-----------------CCCCeE
Q psy5280 59 -----EKLNPERPKFEPYLPPGVPFHPDKS---F------YFPRDFDLERPPRE-GY-----------------AQAPRF 106 (202)
Q Consensus 59 -----~~~~~~~~~~~~w~~~g~~~~p~~~---~------~~~~~~~ie~~~~~-~~-----------------~~~P~f 106 (202)
|+..|.|-+.++|+|||.++.+... . +.+..+...+.|.| |. +.+|.|
T Consensus 348 ~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f 427 (1051)
T KOG3513|consen 348 NVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVF 427 (1051)
T ss_pred CeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCC
Confidence 8889999999999999999876433 2 22234444555543 32 357888
Q ss_pred EeccC-CeeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCc
Q psy5280 107 LNQEH-DTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185 (202)
Q Consensus 107 i~~~~-~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 185 (202)
...+. ....+..|.++.+.|...|.|.|.++|.|++..+.+++|+.+ ..+++|.|.+++.+|+|.|+|+|.|..|
T Consensus 428 ~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i----~edGtL~I~n~t~~DaG~YtC~A~N~~G 503 (1051)
T KOG3513|consen 428 PLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRI----LEDGTLEISNVTRSDAGKYTCVAENKLG 503 (1051)
T ss_pred CCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEE----CCCCcEEecccCcccCcEEEEEEEcccC
Confidence 65544 445677899999999999999999999999998888999998 6789999999999999999999999999
Q ss_pred eEEEEEEEEeecC
Q psy5280 186 TARQRVSSGNPAQ 198 (202)
Q Consensus 186 ~~~~~~~L~V~~~ 198 (202)
.+.+.+.|.|..+
T Consensus 504 ~a~~~~~L~Vkd~ 516 (1051)
T KOG3513|consen 504 KAESTGNLIVKDA 516 (1051)
T ss_pred ccceEEEEEEecC
Confidence 9999999998754
No 13
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.74 E-value=3.5e-17 Score=109.87 Aligned_cols=74 Identities=23% Similarity=0.279 Sum_probs=63.2
Q ss_pred EEEEEEEEeecCCceEEEeCCEEccc-CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEe
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIEM-GGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~~-~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 195 (202)
+.|.|.+.|.|.|.|.|+|++..+.. ..++.+.....+...|.|.++..+|+|.|+|.|.|.+|.+++++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 47999999999999999999999974 456665333334457999999999999999999999999999999875
No 14
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.74 E-value=5.4e-17 Score=111.97 Aligned_cols=88 Identities=24% Similarity=0.285 Sum_probs=74.6
Q ss_pred CCeEEeccCCeeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEe
Q psy5280 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASN 182 (202)
Q Consensus 103 ~P~fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 182 (202)
|+.+...+.+. .+.+|+++.|.|.+.|.|.|.++|+|++..+........ ..+.|.|.++..+|+|.|.|.|.|
T Consensus 1 p~~~~~~p~~~-~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~a~N 74 (88)
T cd04968 1 PSIIVVFPKDT-YALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISM-----SGAVLKIPNIQFEDEGTYECEAEN 74 (88)
T ss_pred CCcEEECCCce-EEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEE-----eCCEEEECCCCcccCEEEEEEEEE
Confidence 35566677777 889999999999999999999999999877655443332 356899999999999999999999
Q ss_pred CCceEEEEEEEEee
Q psy5280 183 EHGTARQRVSSGNP 196 (202)
Q Consensus 183 ~~G~~~~~~~L~V~ 196 (202)
..|...+++.|.|.
T Consensus 75 ~~G~~~~~~~l~V~ 88 (88)
T cd04968 75 IKGKDTHQGRIYVQ 88 (88)
T ss_pred CCCcEEEEEEEEEC
Confidence 99999999999874
No 15
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.73 E-value=3.5e-17 Score=108.67 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=62.7
Q ss_pred eEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEe
Q psy5280 121 NSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 121 ~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 195 (202)
++.|.|.+.|.|.|.++|+|++..+..+.++.+ .....|.|.++..+|+|.|+|.|.|..|++++++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~----~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKI----VKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEE----EecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 478999999999999999999999887777665 22346888899999999999999999999999999875
No 16
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.72 E-value=1.5e-16 Score=110.33 Aligned_cols=88 Identities=15% Similarity=0.099 Sum_probs=73.0
Q ss_pred EEeccCCeeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCc
Q psy5280 106 FLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185 (202)
Q Consensus 106 fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 185 (202)
++..+.+. .+.+|+.+.|.|.+.|.|.|.+.|++++..+......... .......|.|.++..+|.|.|+|.|.|..|
T Consensus 3 ~v~~p~~~-~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G 80 (90)
T cd04972 3 PVDGPNAT-VVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLE-TTVDIYNLQLSNITSETQTTVTCTAENPVG 80 (90)
T ss_pred cccCCcCE-EEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEE-ecCCEEEEEEecCCcccCEEEEEEEECCCC
Confidence 34556666 6889999999999999999999999999988655443221 123457899999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy5280 186 TARQRVSSGN 195 (202)
Q Consensus 186 ~~~~~~~L~V 195 (202)
..++++.|.|
T Consensus 81 ~~~~~~~L~v 90 (90)
T cd04972 81 QANVSVQVTV 90 (90)
T ss_pred ceeEEEEEeC
Confidence 9999998875
No 17
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.72 E-value=8.9e-17 Score=114.07 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=70.4
Q ss_pred eeEEecCCeEEEEEEEEe-ecCCceEEEeCCEEcccCCcEEEEEee----CCeEEEEEccCCCCCCEEEEEEEEeCCceE
Q psy5280 113 TQYGIKNENSSLFWFVYG-YPKPKVSFYFNDELIEMGGRYDSSYTR----NGQATLFINKMLDRDVGMYEALASNEHGTA 187 (202)
Q Consensus 113 ~~~v~~G~~v~L~C~v~G-~P~P~i~W~k~g~~l~~~~r~~i~~~~----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 187 (202)
.+.+.+|+++.|.|.+.| .|.|.+.|+|||.+|.......+.... ...+.|.|..+..+|+|.|+|.|.|..|.+
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 348889999999999999 899999999999999865443332111 124789999999999999999999999999
Q ss_pred EEEEEEEee
Q psy5280 188 RQRVSSGNP 196 (202)
Q Consensus 188 ~~~~~L~V~ 196 (202)
+.++.|.|.
T Consensus 92 ~~t~~L~V~ 100 (101)
T cd04975 92 SLTFELYVN 100 (101)
T ss_pred EEEEEEEEE
Confidence 999999886
No 18
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.71 E-value=2.1e-16 Score=105.44 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=65.0
Q ss_pred eEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEe
Q psy5280 121 NSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 121 ~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 195 (202)
.+.|.|.+.|.|.|.++|+|+|..+..+.++.+.. ....+.|.|.++..+|+|.|+|.|.|..|.+++++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIET-TASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEE-CCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 37899999999999999999999997777776633 234678999999999999999999999999999998875
No 19
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.71 E-value=2.7e-16 Score=109.66 Aligned_cols=82 Identities=24% Similarity=0.361 Sum_probs=71.4
Q ss_pred eEEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy5280 114 QYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSS 193 (202)
Q Consensus 114 ~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 193 (202)
+.+.+|+.+.|.|.+.|.|.|.+.|+|++..+....++.+.........|.|.++..+|+|.|+|.|.|..|..++++.|
T Consensus 11 v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05891 11 VTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTV 90 (92)
T ss_pred EEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEE
Confidence 38899999999999999999999999999998877776653333334589999999999999999999999999998888
Q ss_pred Ee
Q psy5280 194 GN 195 (202)
Q Consensus 194 ~V 195 (202)
.|
T Consensus 91 ~~ 92 (92)
T cd05891 91 SV 92 (92)
T ss_pred EC
Confidence 65
No 20
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.71 E-value=2.5e-16 Score=110.09 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=70.1
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCCEEcccC-CcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMG-GRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSS 193 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~-~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 193 (202)
.+..|+++.|.|.+.|.|.|.+.|+|+|..+... .++.. ......|.|.++..+|+|.|+|.|.|..|...+++.|
T Consensus 14 ~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L 90 (95)
T cd05730 14 TANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSF---NEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90 (95)
T ss_pred EEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEE---eCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence 6789999999999999999999999999998765 44433 1334679999999999999999999999999999999
Q ss_pred Eeec
Q psy5280 194 GNPA 197 (202)
Q Consensus 194 ~V~~ 197 (202)
.|.+
T Consensus 91 ~V~~ 94 (95)
T cd05730 91 KVFA 94 (95)
T ss_pred EEEe
Confidence 9875
No 21
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.71 E-value=1.2e-16 Score=106.52 Aligned_cols=73 Identities=23% Similarity=0.201 Sum_probs=66.4
Q ss_pred CCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEe
Q psy5280 119 NENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 195 (202)
|+++.|.|.+.|.|.|.++|+|++..+....++.+ ...+.|.|.++..+|+|.|+|.|.|..|..++++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICI----WPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEE----CCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 68899999999999999999999999987777776 34567999999999999999999999999999999876
No 22
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.71 E-value=1.9e-16 Score=112.43 Aligned_cols=83 Identities=17% Similarity=0.208 Sum_probs=69.8
Q ss_pred eEEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEe-----eCCeEEEEEccCCCCCCEEEEEEEEeCCceEE
Q psy5280 114 QYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYT-----RNGQATLFINKMLDRDVGMYEALASNEHGTAR 188 (202)
Q Consensus 114 ~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~-----~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 188 (202)
..+..|+.+.|.|.+.|+|.|.+.|+|||.+|..+.+..+... ....++|.|.++..+|+|.|+|.|.|..|.++
T Consensus 13 ~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~ 92 (101)
T cd05859 13 EFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKS 92 (101)
T ss_pred EEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEE
Confidence 3778899999999999999999999999999986654333111 01235899999999999999999999999999
Q ss_pred EEEEEEee
Q psy5280 189 QRVSSGNP 196 (202)
Q Consensus 189 ~~~~L~V~ 196 (202)
.++.|.|.
T Consensus 93 ~t~~l~V~ 100 (101)
T cd05859 93 YTFALQIQ 100 (101)
T ss_pred EEEEEEEE
Confidence 99999885
No 23
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.70 E-value=2.9e-16 Score=107.33 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=68.2
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSG 194 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~ 194 (202)
.+.+|+.+.|.|.+.|.|.|.++|+|+|..+....+............|.|.++..+|+|.|+|.|.|..|+..+++.|.
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 67889999999999999999999999999987654432111123456899999999999999999999999999999887
Q ss_pred e
Q psy5280 195 N 195 (202)
Q Consensus 195 V 195 (202)
|
T Consensus 85 v 85 (85)
T cd05857 85 V 85 (85)
T ss_pred C
Confidence 5
No 24
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.70 E-value=2.2e-16 Score=111.07 Aligned_cols=85 Identities=22% Similarity=0.225 Sum_probs=69.4
Q ss_pred cCCeeEEecCCeEEEEEEEEeecC-CceEEEe-CCEEccc-CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCC-c
Q psy5280 110 EHDTQYGIKNENSSLFWFVYGYPK-PKVSFYF-NDELIEM-GGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEH-G 185 (202)
Q Consensus 110 ~~~~~~v~~G~~v~L~C~v~G~P~-P~i~W~k-~g~~l~~-~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~-G 185 (202)
+.+. .+..|+++.|.|.+.|.|. |.++|++ ++..+.. ..++.+.......++|.|.++..+|+|.|+|.|.|.+ |
T Consensus 7 p~~~-~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g 85 (96)
T cd05865 7 PSQG-EISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEG 85 (96)
T ss_pred CCcc-EECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCC
Confidence 4444 7888999999999999995 7999998 7876665 4455553333335789999999999999999999997 8
Q ss_pred eEEEEEEEEe
Q psy5280 186 TARQRVSSGN 195 (202)
Q Consensus 186 ~~~~~~~L~V 195 (202)
.+.+++.|.|
T Consensus 86 ~~~~s~~l~v 95 (96)
T cd05865 86 ESEATVNVKI 95 (96)
T ss_pred cEEEEEEEEE
Confidence 9999998876
No 25
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.70 E-value=3.2e-16 Score=110.36 Aligned_cols=90 Identities=19% Similarity=0.319 Sum_probs=72.1
Q ss_pred CCeEEeccCCeeEEecCCeEEEEEEEEeecCCceEEEeC--CEEccc-----CCcEEEEEeeCCeEEEEEccCCCCCCEE
Q psy5280 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFN--DELIEM-----GGRYDSSYTRNGQATLFINKMLDRDVGM 175 (202)
Q Consensus 103 ~P~fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~--g~~l~~-----~~r~~i~~~~~~~~~L~I~~~~~~D~G~ 175 (202)
+|.++ .+.+. .+.+|+++.|.|.+.|.|.|.|+|+|+ +..+.. ..++.+. .......|.|.++..+|+|.
T Consensus 2 ~p~i~-~~~~~-~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~-~~~~~~~L~I~~v~~~D~G~ 78 (98)
T cd05870 2 QPHII-QLKNE-TTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVK-GQHGESSLHIKDVKLSDSGR 78 (98)
T ss_pred CCEEE-eeccE-EEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEe-ecCCeeEEEEeeCCcCCCEE
Confidence 56665 46677 899999999999999999999999994 444432 2355542 22235689999999999999
Q ss_pred EEEEEEeCCceEEEEEEEEe
Q psy5280 176 YEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 176 Y~C~a~N~~G~~~~~~~L~V 195 (202)
|+|.|.|..|..+.++.|.|
T Consensus 79 Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 79 YDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEeccCCcceeEEEEeC
Confidence 99999999999999888865
No 26
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.70 E-value=2.5e-16 Score=105.80 Aligned_cols=72 Identities=24% Similarity=0.341 Sum_probs=63.3
Q ss_pred CCeEEEEEEEEeecCCceEEEeCCEEcccCC---cEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEe
Q psy5280 119 NENSSLFWFVYGYPKPKVSFYFNDELIEMGG---RYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~---r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 195 (202)
|+++.|.|.+.|.|.|.++|+|+|..+.... ++.+ ..+.|.|.++..+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV-----SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe-----eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 7889999999999999999999999887542 3333 3467999999999999999999999999999999887
No 27
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.70 E-value=2.2e-16 Score=106.18 Aligned_cols=76 Identities=26% Similarity=0.310 Sum_probs=62.9
Q ss_pred CCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEee
Q psy5280 119 NENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGNP 196 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 196 (202)
|+++.|.|.+.|.|.|+|+|+|+|+.+.......... .....|.|.++...|+|.|+|.|.|.+|.+.+++.|.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~--~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRK--VDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEE--ecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 6889999999999999999999999986432111101 123578999999999999999999999999999999873
No 28
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.69 E-value=4.8e-16 Score=107.55 Aligned_cols=81 Identities=21% Similarity=0.194 Sum_probs=68.4
Q ss_pred CCeEEEEEEEEeecCCceEEEeCCEEcccC-CcEEEEEeeCC---eEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy5280 119 NENSSLFWFVYGYPKPKVSFYFNDELIEMG-GRYDSSYTRNG---QATLFINKMLDRDVGMYEALASNEHGTARQRVSSG 194 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~-~r~~i~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~ 194 (202)
|+.+.|.|.+.|.|.|.+.|+|++..+..+ .++.+.....+ .+.|.|.++..+|+|.|+|.|.|..|..++.+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 789999999999999999999999988653 46655322111 26799999999999999999999999999999999
Q ss_pred eecCC
Q psy5280 195 NPAQG 199 (202)
Q Consensus 195 V~~~~ 199 (202)
|..+.
T Consensus 81 V~~~P 85 (88)
T cd05735 81 VQEPP 85 (88)
T ss_pred EeCCC
Confidence 98653
No 29
>KOG3513|consensus
Probab=99.69 E-value=3.6e-16 Score=145.55 Aligned_cols=136 Identities=21% Similarity=0.204 Sum_probs=110.9
Q ss_pred eeeeecCCCCCeeeecCCCeecCCCCce-------eeeccccccCCCCC-C----------------CCCCCeEEeccCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPDKSF-------YFPRDFDLERPPRE-G----------------YAQAPRFLNQEHD 112 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~~~~-------~~~~~~~ie~~~~~-~----------------~~~~P~fi~~~~~ 112 (202)
..|..-|.|.+.+.|.|.|.+..++... +.+..+..++.|.| | ...+|.|+..+++
T Consensus 261 LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d 340 (1051)
T KOG3513|consen 261 LECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQD 340 (1051)
T ss_pred EEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccce
Confidence 3476789999999999999853443222 12233444555554 2 1258999999999
Q ss_pred eeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCc---EEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEE
Q psy5280 113 TQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGR---YDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189 (202)
Q Consensus 113 ~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r---~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 189 (202)
. .+..|+++.|.|.+.|.|.|.++|.|||.+|....+ +.+ ..++|.|.++...|+|.|.|.|+|..|...+
T Consensus 341 ~-~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i-----~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~a 414 (1051)
T KOG3513|consen 341 T-EADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKI-----DDGTLIISNVQESDSGVYQCIAENKYGTIYA 414 (1051)
T ss_pred e-EecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEE-----eCCEEEEEecccccCeEEEeeeecccceEee
Confidence 9 888999999999999999999999999999997766 666 3678999999999999999999999999999
Q ss_pred EEEEEeecC
Q psy5280 190 RVSSGNPAQ 198 (202)
Q Consensus 190 ~~~L~V~~~ 198 (202)
.+.|.|.+.
T Consensus 415 nA~L~V~a~ 423 (1051)
T KOG3513|consen 415 NAELKVLAS 423 (1051)
T ss_pred eeEEEEEcc
Confidence 999999875
No 30
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.69 E-value=1.5e-16 Score=104.95 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=62.0
Q ss_pred EEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSG 194 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~ 194 (202)
|.|.|.+.|.|.|.++|+|++..+..+.++.+ ...+.|.|.++..+|+|.|+|.|.|.+|..++++.|+
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHI----SPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEE----CCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 57999999999999999999999987777776 4457899999999999999999999999999888773
No 31
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.68 E-value=6.4e-16 Score=108.11 Aligned_cols=92 Identities=20% Similarity=0.235 Sum_probs=68.9
Q ss_pred CCeEEeccCCeeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccC----CcEEEEEeeCCeEEEEEc--cCCCCCCEEE
Q psy5280 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMG----GRYDSSYTRNGQATLFIN--KMLDRDVGMY 176 (202)
Q Consensus 103 ~P~fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~----~r~~i~~~~~~~~~L~I~--~~~~~D~G~Y 176 (202)
+|.|+..+.+. .+.+|+++.|.|.+.|.|.|.++|+|+|..+... ..............+.+. .+..+|+|.|
T Consensus 1 ~P~i~~~p~~~-~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 1 PPRIVEHPSDL-IVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CCeEEecCcee-EEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence 58888888887 8999999999999999999999999999988751 111111111111222332 3468999999
Q ss_pred EEEEEeCCce-EEEEEEEEe
Q psy5280 177 EALASNEHGT-ARQRVSSGN 195 (202)
Q Consensus 177 ~C~a~N~~G~-~~~~~~L~V 195 (202)
+|.|.|..|. .+..+.|.|
T Consensus 80 ~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 80 VCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEccccceecceEEEEe
Confidence 9999999999 667777766
No 32
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.68 E-value=1.1e-15 Score=107.37 Aligned_cols=91 Identities=21% Similarity=0.201 Sum_probs=70.8
Q ss_pred CCeEEeccCCeeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccC-----CcEEEEEeeCCeEEEEEccCCCCCCEEEE
Q psy5280 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMG-----GRYDSSYTRNGQATLFINKMLDRDVGMYE 177 (202)
Q Consensus 103 ~P~fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~-----~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~ 177 (202)
.|.|...+... .+..|+.+.|.|.+.|.|.|.++|++++..+... .++.+. .....+.|.|.++..+|+|.|+
T Consensus 2 ~p~i~~~~~~~-~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~-~~~~~~~L~I~~v~~~D~G~Y~ 79 (97)
T cd05869 2 KPKITYVENQT-AMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVR-SHARVSSLTLKYIQYTDAGEYL 79 (97)
T ss_pred CceEEEccCce-EEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEE-cCccEEEEEEecCccCcCEEEE
Confidence 46665444444 5556899999999999999999999998877532 233331 1123468999999999999999
Q ss_pred EEEEeCCceEEEEEEEEe
Q psy5280 178 ALASNEHGTARQRVSSGN 195 (202)
Q Consensus 178 C~a~N~~G~~~~~~~L~V 195 (202)
|.|.|..|..+.++.|.|
T Consensus 80 C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 80 CTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEecCCCCeeEEEEEEC
Confidence 999999999999998875
No 33
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.68 E-value=3.3e-16 Score=108.59 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=68.0
Q ss_pred CCeEEEEEEEEeecCCceEEEeCCEEc--------ccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEE
Q psy5280 119 NENSSLFWFVYGYPKPKVSFYFNDELI--------EMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQR 190 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P~i~W~k~g~~l--------~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 190 (202)
|+++.|.|.+.|.|.|.+.|+|++..+ ....++.+ ...+.|.|.++..+|+|.|+|.|.|..|...+.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 76 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV----SQTGDLTITNVQRSDVGYYICQTLNVAGSILTK 76 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE----CCCCeEEEeeCChhhCEEEEEEEEcCCCceEEE
Confidence 788999999999999999999998643 22445555 334679999999999999999999999999999
Q ss_pred EEEEeecCCCCC
Q psy5280 191 VSSGNPAQGSGR 202 (202)
Q Consensus 191 ~~L~V~~~~~~~ 202 (202)
+.|.|...-..|
T Consensus 77 ~~l~V~~~~~~~ 88 (90)
T cd05726 77 AYLEVTDVIADR 88 (90)
T ss_pred EEEEEeecccCC
Confidence 999999876655
No 34
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.68 E-value=1.1e-15 Score=106.84 Aligned_cols=90 Identities=20% Similarity=0.247 Sum_probs=72.3
Q ss_pred CCeEEeccCCeeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccC-----CcEEEEEeeCCeEEEEEccCCCCCCEEEE
Q psy5280 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMG-----GRYDSSYTRNGQATLFINKMLDRDVGMYE 177 (202)
Q Consensus 103 ~P~fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~-----~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~ 177 (202)
+|.+. .+.+. .+.+|+++.|.|.+.|.|.|.+.|++++..+... .++.+. .....+.|.|.++..+|+|.|+
T Consensus 2 ~P~i~-~~~~~-~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~ 78 (96)
T cd05732 2 QPKIT-YLENQ-TAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVR-GHARVSSLTLKDVQLTDAGRYD 78 (96)
T ss_pred Cccce-ecCce-eEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEe-CCccEEEEEECcCCcCcCEEeE
Confidence 45554 45566 8899999999999999999999999998766532 234331 1223568999999999999999
Q ss_pred EEEEeCCceEEEEEEEEe
Q psy5280 178 ALASNEHGTARQRVSSGN 195 (202)
Q Consensus 178 C~a~N~~G~~~~~~~L~V 195 (202)
|.|.|..|..+.++.|.|
T Consensus 79 C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 79 CEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEeCCCCcEEEEEEeC
Confidence 999999999999888875
No 35
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.67 E-value=8.3e-16 Score=107.61 Aligned_cols=82 Identities=24% Similarity=0.304 Sum_probs=65.7
Q ss_pred CeEEeccCCeeEEe---cCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCC-CCCCEEEEEE
Q psy5280 104 PRFLNQEHDTQYGI---KNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKML-DRDVGMYEAL 179 (202)
Q Consensus 104 P~fi~~~~~~~~v~---~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~-~~D~G~Y~C~ 179 (202)
|.|+..+.+. .+. +|+.+.|.|.+.|.|.|.++|+|+|..|......... ...+.|.|.++. .+|+|.|.|.
T Consensus 2 P~f~~~p~~~-~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~---~~~g~L~i~~~~~~~D~G~Y~C~ 77 (94)
T cd05848 2 PVFVQEPDDA-IFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYS---LIDGNLIISNPSEVKDSGRYQCL 77 (94)
T ss_pred CeeEECCCcE-EccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEE---eeCCeEEEccCCccCcCEEEEEE
Confidence 7899888886 443 4789999999999999999999999998754332221 123578888875 6999999999
Q ss_pred EEeCCceEEE
Q psy5280 180 ASNEHGTARQ 189 (202)
Q Consensus 180 a~N~~G~~~~ 189 (202)
|.|.+|...+
T Consensus 78 A~N~~G~~~S 87 (94)
T cd05848 78 ATNSIGSILS 87 (94)
T ss_pred EEcCCCeEEe
Confidence 9999998854
No 36
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.67 E-value=1.2e-15 Score=103.07 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=65.3
Q ss_pred CCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEe
Q psy5280 119 NENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 195 (202)
|+++.|.|.+.|.|.|.++|++++..+....++.+.. ....+.|.|.++..+|+|.|+|.|.|..|...+.+.+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITS-EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEE-CCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 6889999999999999999999999887777766532 234578999999999999999999999999987776554
No 37
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.67 E-value=8.8e-16 Score=107.35 Aligned_cols=85 Identities=26% Similarity=0.272 Sum_probs=68.0
Q ss_pred CCeEEeccCCeeEEecC---CeEEEEEEEEeecCCceEEEeCCEEccc-CCcEEEEEeeCCeEEEEEccCC-CCCCEEEE
Q psy5280 103 APRFLNQEHDTQYGIKN---ENSSLFWFVYGYPKPKVSFYFNDELIEM-GGRYDSSYTRNGQATLFINKML-DRDVGMYE 177 (202)
Q Consensus 103 ~P~fi~~~~~~~~v~~G---~~v~L~C~v~G~P~P~i~W~k~g~~l~~-~~r~~i~~~~~~~~~L~I~~~~-~~D~G~Y~ 177 (202)
.|.|+.++.++ .+.++ ..+.|.|.+.|.|.|.++|+|++..+.. ..++.+ .++.|.|.++. .+|+|.|.
T Consensus 1 ~P~f~~~P~~~-~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~-----~~g~L~I~~~~~~~D~G~Y~ 74 (93)
T cd05849 1 GPVFEEQPIDT-IYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM-----VGGNLVINNPDKYKDAGRYV 74 (93)
T ss_pred CCEEEECCCCE-EecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE-----ECCEEEECcCCcCCCCEEEE
Confidence 48899988887 55444 4799999999999999999999998864 345544 24679999885 68999999
Q ss_pred EEEEeCCceEEE-EEEE
Q psy5280 178 ALASNEHGTARQ-RVSS 193 (202)
Q Consensus 178 C~a~N~~G~~~~-~~~L 193 (202)
|.|.|..|.+.+ .+.|
T Consensus 75 C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 75 CIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEEeCcceEEEccEEE
Confidence 999999998855 4554
No 38
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.67 E-value=5.4e-16 Score=102.88 Aligned_cols=71 Identities=25% Similarity=0.314 Sum_probs=60.2
Q ss_pred EEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEee
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGNP 196 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 196 (202)
+.|.|.+.|.|.|.+.|+|++..+..+..... ...+.|.|.++..+|+|.|+|.|.|..|..++++.|.|.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKL----NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEE----cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 47999999999999999999987765432222 346789999999999999999999999999999988873
No 39
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.67 E-value=5.9e-16 Score=101.69 Aligned_cols=66 Identities=24% Similarity=0.322 Sum_probs=56.8
Q ss_pred EEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEee
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGNP 196 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 196 (202)
+.|.|.+.|.|.|.++|+|||..|... ...+.|.|.++..+|+|.|+|.|.|..|..+.+..|.|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~---------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK---------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc---------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 479999999999999999999988632 234689999999999999999999999988777776653
No 40
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.67 E-value=9e-16 Score=102.65 Aligned_cols=76 Identities=24% Similarity=0.241 Sum_probs=64.4
Q ss_pred CCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEee
Q psy5280 119 NENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGNP 196 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 196 (202)
|+++.|.|.+.|.|.|.|.|++++..+........ .......|.|.++..+|+|.|+|.|.|..|...+.+.|.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPR--RRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcce--EEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 78899999999999999999999998876443211 11345789999999999999999999999999999998873
No 41
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.66 E-value=1.1e-15 Score=101.01 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=58.5
Q ss_pred CCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy5280 119 NENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSG 194 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~ 194 (202)
|+++.|.|.+.|.|.|.|.|+|++..+....++.+ ....|.|.++. |+|.|+|.|.|..|...+++.|+
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence 67899999999999999999999998876555443 24578888874 79999999999999999888763
No 42
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.66 E-value=5.8e-16 Score=102.64 Aligned_cols=68 Identities=26% Similarity=0.434 Sum_probs=57.4
Q ss_pred EEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEe
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 195 (202)
+.|.|.+.|.|.|.++|+|+|+.|....++. ..+.|.|.++..+|+|.|+|.|.|.+|.......+.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~------~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK------RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEc------cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 4689999999999999999999997654332 2457999999999999999999999997776666554
No 43
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.66 E-value=1.9e-15 Score=103.93 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=64.3
Q ss_pred CeEEEEEEEEeecCCc--eEEEeCCEEcccC---CcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy5280 120 ENSSLFWFVYGYPKPK--VSFYFNDELIEMG---GRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSG 194 (202)
Q Consensus 120 ~~v~L~C~v~G~P~P~--i~W~k~g~~l~~~---~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~ 194 (202)
+++.|.|.+.|.|.|. +.|+|++..+... .++.........+.|.|.++...|+|.|+|.|.|.+|..++++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 4789999999999984 7999999988642 2332211122357899999999999999999999999999999999
Q ss_pred eecC
Q psy5280 195 NPAQ 198 (202)
Q Consensus 195 V~~~ 198 (202)
|..+
T Consensus 81 V~~~ 84 (85)
T cd05854 81 VRGP 84 (85)
T ss_pred EECC
Confidence 9864
No 44
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.65 E-value=1e-15 Score=101.64 Aligned_cols=70 Identities=24% Similarity=0.384 Sum_probs=60.6
Q ss_pred EEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEee
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGNP 196 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 196 (202)
++|.|.+.|.|.|.++|+|+|..+..+.++.. ..+.|.|.++..+|+|.|+|.|.|..|.......+.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~-----~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK-----SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc-----CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 47999999999999999999999987755443 45789999999999999999999999988777777653
No 45
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.65 E-value=2.2e-15 Score=102.11 Aligned_cols=72 Identities=19% Similarity=0.346 Sum_probs=59.5
Q ss_pred EEEEEEEeecCCceEEEeCCEEcccCCcEEEEEe----eCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy5280 123 SLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYT----RNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSG 194 (202)
Q Consensus 123 ~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~----~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~ 194 (202)
.|.|.+.|.|.|+|+|+|||..|..+.++..... ....+.|.|.++...|+|.|+|+|.|..|+++.++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 4789999999999999999999987765433211 12346899999999999999999999999998887764
No 46
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.64 E-value=4.1e-15 Score=104.08 Aligned_cols=85 Identities=26% Similarity=0.303 Sum_probs=67.4
Q ss_pred CCeEEeccCCeeEEecC---CeEEEEEEEEeecCCceEEEeCCEEcccC--CcEEEEEeeCCeEEEEEccCC-CCCCEEE
Q psy5280 103 APRFLNQEHDTQYGIKN---ENSSLFWFVYGYPKPKVSFYFNDELIEMG--GRYDSSYTRNGQATLFINKML-DRDVGMY 176 (202)
Q Consensus 103 ~P~fi~~~~~~~~v~~G---~~v~L~C~v~G~P~P~i~W~k~g~~l~~~--~r~~i~~~~~~~~~L~I~~~~-~~D~G~Y 176 (202)
.|.|+.++.+. .+.+| +++.|.|.+.|.|.|.++|+++|..+... .++.+ . .+.|.|.++. ..|+|.|
T Consensus 1 ~P~f~~~P~~~-~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~----~-~g~L~I~~~~~~~D~G~Y 74 (94)
T cd05850 1 GPVFEEQPSSL-LFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL----V-AGNLVINNPQKARDAGSY 74 (94)
T ss_pred CCeeEECCCCE-EecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE----E-CCeEEEccCCccCcCEEE
Confidence 37888888888 55555 58999999999999999999999998643 34444 1 3578888765 5999999
Q ss_pred EEEEEeCCceEEE-EEEE
Q psy5280 177 EALASNEHGTARQ-RVSS 193 (202)
Q Consensus 177 ~C~a~N~~G~~~~-~~~L 193 (202)
.|.|.|..|...+ .+.|
T Consensus 75 ~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 75 QCLAINRCGTVVSREANL 92 (94)
T ss_pred EEEEEcCcCcEEEEEEEE
Confidence 9999999998865 4444
No 47
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.64 E-value=3.6e-15 Score=101.63 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=60.1
Q ss_pred EEEEEEEeecCCceEEEeCCEEcccCCcEEEEEee------CCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEe
Q psy5280 123 SLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTR------NGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 123 ~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~------~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 195 (202)
.|.|.+.|.|.|.|+|+|+|..|..+.++...... ...+.|.|.++...|+|.|+|+|.|.+|.+++++.|..
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 37899999999999999999999876654332221 22567999999999999999999999999988877653
No 48
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.64 E-value=1.8e-15 Score=100.82 Aligned_cols=73 Identities=25% Similarity=0.279 Sum_probs=62.4
Q ss_pred CCeEEEEEEEEeecCCceEEEe-CCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEe
Q psy5280 119 NENSSLFWFVYGYPKPKVSFYF-NDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P~i~W~k-~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 195 (202)
|+.+.|.|.+.|.|.|.+.|++ ++..+....++.+ ...+.|.|..+...|+|.|+|.|.|..|.+++++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLV----YDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEE----ecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7889999999999999999997 6777666555544 23467999999999999999999999999998888875
No 49
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.64 E-value=2.6e-15 Score=105.05 Aligned_cols=85 Identities=20% Similarity=0.328 Sum_probs=67.6
Q ss_pred EEeccCCeeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCc--EEEEEeeCCeEEEEEccC-----CCCCCEEEEE
Q psy5280 106 FLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGR--YDSSYTRNGQATLFINKM-----LDRDVGMYEA 178 (202)
Q Consensus 106 fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r--~~i~~~~~~~~~L~I~~~-----~~~D~G~Y~C 178 (202)
|+..+.+. .+.+|+++.|.|.+.|.|.|.+.|+|+|..+..... +.+ ...+.|.|.++ ...|+|.|.|
T Consensus 2 f~~~P~~~-~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~----~~~~~l~i~~v~~~~~~~~D~G~Y~C 76 (95)
T cd05722 2 FLSEPSDI-VAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQ----LPNGSLLITSVVHSKHNKPDEGFYQC 76 (95)
T ss_pred cEECCCCe-EEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEE----ccCCeEEEeeeeccCCCCCcCEEEEE
Confidence 56777777 888999999999999999999999999999875432 333 22345667665 5889999999
Q ss_pred EEEeC-CceE-EEEEEEEe
Q psy5280 179 LASNE-HGTA-RQRVSSGN 195 (202)
Q Consensus 179 ~a~N~-~G~~-~~~~~L~V 195 (202)
.|.|. .|.. +..+.|.|
T Consensus 77 ~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 77 VAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EEECCccCcEEEeeeEEeC
Confidence 99999 9987 45666654
No 50
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.64 E-value=7.4e-15 Score=102.46 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=68.7
Q ss_pred eccCCeeEEecCCeEEEEEEEEeecCCceEEEe-CCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCce
Q psy5280 108 NQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYF-NDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGT 186 (202)
Q Consensus 108 ~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k-~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 186 (202)
.++.+. .+.+|+++.|.|.+.|.|. .+.|++ ++..+..+.++.+. .....+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 5 ~~~~~~-~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~-~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 81 (92)
T cd05866 5 ISLSKV-ELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQ-KEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 81 (92)
T ss_pred EEecce-EEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEE-eCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence 345566 8889999999999999998 899998 57777777777662 2233568999999999999999999999998
Q ss_pred E-EEEEEEEe
Q psy5280 187 A-RQRVSSGN 195 (202)
Q Consensus 187 ~-~~~~~L~V 195 (202)
. .+++.|.+
T Consensus 82 ~~~~~i~l~~ 91 (92)
T cd05866 82 TQEATVVLEI 91 (92)
T ss_pred EEEEEEEEEE
Confidence 6 45556654
No 51
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.64 E-value=2.4e-15 Score=100.52 Aligned_cols=70 Identities=21% Similarity=0.358 Sum_probs=59.7
Q ss_pred EEEEEEEEeecCCceEEEeCCEEcc--cCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceE-EEEEEEEe
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIE--MGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA-RQRVSSGN 195 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~--~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L~V 195 (202)
+.|.|.+.|.|.|.|+|+|++..+. ...++.+ ...+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~----~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQ----LRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEE----cCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999999999999999999887 3455555 345679999999999999999999999985 67778776
No 52
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.63 E-value=1.4e-15 Score=101.76 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=58.8
Q ss_pred EEEEEEEEeecCCceEEEeCCEEccc---CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEee
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIEM---GGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGNP 196 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~~---~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 196 (202)
+.|.|.+.|.|.|.++|+|++..... ..++.+ ......|.|.++..+|+|.|+|.|.|..|..++.+.|.|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 75 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHV---MPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEE---ecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence 47999999999999999999864322 233433 1234589999999999999999999999999999999873
No 53
>KOG4221|consensus
Probab=99.63 E-value=1.6e-15 Score=141.45 Aligned_cols=186 Identities=20% Similarity=0.239 Sum_probs=133.0
Q ss_pred CCCcccccCCCCCCCCC----------CCCCCC-----CCCC--------------c----ccCCCCCCCccCCeeeecc
Q psy5280 8 ERPKFEPYLPPGVPFHP----------DKSFYF-----PRDF--------------D----LERPPREGYAQAPRFLNQE 54 (202)
Q Consensus 8 ~~~~~~~~~~~~~~~~~----------~~~~~~-----~~~~--------------~----~~r~~~~~~~~~p~f~~~~ 54 (202)
.+.+.+-|-+||..+.- .+|.|. +|+- | +-|++....++.+.|..+.
T Consensus 68 ~~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~ 147 (1381)
T KOG4221|consen 68 GTSVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQP 147 (1381)
T ss_pred CCCeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCc
Confidence 35677889999887653 345442 1111 1 2377777788888999886
Q ss_pred ce----------eeeeecCCCCCeeeecCCCeecCCCCce--eeecccccc-----CCCCC-C-----------C-----
Q psy5280 55 HD----------TQEKLNPERPKFEPYLPPGVPFHPDKSF--YFPRDFDLE-----RPPRE-G-----------Y----- 100 (202)
Q Consensus 55 ~~----------~~~~~~~~~~~~~~w~~~g~~~~p~~~~--~~~~~~~ie-----~~~~~-~-----------~----- 100 (202)
.+ ..|.+++++.+++.|+|+..++.-+..+ .....+.|. +.|.| | +
T Consensus 148 ~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~lt 227 (1381)
T KOG4221|consen 148 ESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELT 227 (1381)
T ss_pred cceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEE
Confidence 65 3388999999999999999975433311 111223332 22222 1 0
Q ss_pred -------CCCCeEEeccCCeeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccC-CcEEEEEeeCCeEEEEEccCCCCC
Q psy5280 101 -------AQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMG-GRYDSSYTRNGQATLFINKMLDRD 172 (202)
Q Consensus 101 -------~~~P~fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~-~r~~i~~~~~~~~~L~I~~~~~~D 172 (202)
...-.|+..+... .+.+|+++.|+|.+.|.|.|.|.|.+|+..|.-. .++.+ .+.+.|.|.++...|
T Consensus 228 v~s~~~~~~~~~fl~~p~~~-~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl----~g~~slliS~a~~~d 302 (1381)
T KOG4221|consen 228 VLSDPGALNKLVFLDEPSNA-VVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVL----VGGSSLLISNATDDD 302 (1381)
T ss_pred ecCCcccccceeeecCCCcc-ccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEE----ecccceEEecccccc
Confidence 0223477777777 8899999999999999999999999999998754 34444 456789999999999
Q ss_pred CEEEEEEEEeCCceEEEEEEEEeecC
Q psy5280 173 VGMYEALASNEHGTARQRVSSGNPAQ 198 (202)
Q Consensus 173 ~G~Y~C~a~N~~G~~~~~~~L~V~~~ 198 (202)
+|.|+|+|.|..-...+++.|.|.++
T Consensus 303 Sg~YtC~Atn~~D~idasaev~V~a~ 328 (1381)
T KOG4221|consen 303 SGKYTCRATNTNDSIDASAEVTVLAP 328 (1381)
T ss_pred CceEEEEecCCCcccccceEEEEEcC
Confidence 99999999997777777888888765
No 54
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.62 E-value=2.1e-15 Score=99.25 Aligned_cols=69 Identities=25% Similarity=0.223 Sum_probs=59.3
Q ss_pred EEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEe
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 195 (202)
+.|.|.+.|.|.|.+.|+|++..+.. .++.+ ...+.|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEI----LDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEE----eeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47999999999999999999877643 44554 23568999999999999999999999999999998875
No 55
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.62 E-value=4.2e-15 Score=97.98 Aligned_cols=70 Identities=29% Similarity=0.320 Sum_probs=59.0
Q ss_pred EEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEe
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 195 (202)
+.|.|.+.|.|.|.+.|+|++..+... +... ......|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKF---ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-ceeE---ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 479999999999999999999877543 2222 133568999999999999999999999999999998877
No 56
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.62 E-value=6.6e-15 Score=99.20 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=57.3
Q ss_pred EEEEEEEEeecCCceEEEeCCEEcccCC-cEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEe
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIEMGG-RYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~~~~-r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 195 (202)
+.|.|.+.|.|.|.++|+|+|..+.... ++.+ ....+.|.|.++..+|+|.|.|.|.|.+|...+++.++|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSV---SSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEE---eCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 5799999999999999999999986543 3333 133468999999999999999999999998865544443
No 57
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.61 E-value=7e-15 Score=100.52 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=66.4
Q ss_pred cCCeeEEecCCeEEEEEEE-EeecCCceEEEeCCEEccc-CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceE
Q psy5280 110 EHDTQYGIKNENSSLFWFV-YGYPKPKVSFYFNDELIEM-GGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187 (202)
Q Consensus 110 ~~~~~~v~~G~~v~L~C~v-~G~P~P~i~W~k~g~~l~~-~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 187 (202)
+.+. .+.+|+++.|.|.+ .|.|.|.+.|+|++..+.. ..++.+ ...+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 3 p~~~-~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 77 (86)
T cd05724 3 PSDT-QVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRI----VDDGNLLIAEARKSDEGTYKCVATNMVGER 77 (86)
T ss_pred CccE-EEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEE----ccCCEEEEeECCcccCEEEEEEEEeccCce
Confidence 3445 78899999999998 7999999999999998876 445554 235689999999999999999999999986
Q ss_pred E-EEEEEEe
Q psy5280 188 R-QRVSSGN 195 (202)
Q Consensus 188 ~-~~~~L~V 195 (202)
. ..+.|.|
T Consensus 78 ~s~~~~l~V 86 (86)
T cd05724 78 ESAAARLSV 86 (86)
T ss_pred eeeeEEEEC
Confidence 4 4555543
No 58
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.61 E-value=1.5e-14 Score=104.03 Aligned_cols=96 Identities=15% Similarity=0.230 Sum_probs=72.7
Q ss_pred CCeEEeccCCeeEEe---cCCeEEEEEEEEeecCCceEEEeCCEEccc-CCcEEEEEeeC---CeEEEEEccCC-CCCCE
Q psy5280 103 APRFLNQEHDTQYGI---KNENSSLFWFVYGYPKPKVSFYFNDELIEM-GGRYDSSYTRN---GQATLFINKML-DRDVG 174 (202)
Q Consensus 103 ~P~fi~~~~~~~~v~---~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~-~~r~~i~~~~~---~~~~L~I~~~~-~~D~G 174 (202)
+|.|...+.....+. .|..+.|.|.+.|.|.|.+.|+|++..|.. ..++.+..... ..+.|.|.++. .+|.|
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G 83 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYA 83 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCE
Confidence 566655544332222 468999999999999999999999999864 34554322111 13679999997 58999
Q ss_pred EEEEEEEeCCceEEEEEEEEeecC
Q psy5280 175 MYEALASNEHGTARQRVSSGNPAQ 198 (202)
Q Consensus 175 ~Y~C~a~N~~G~~~~~~~L~V~~~ 198 (202)
.|+|.|.|..|.....+.|.|...
T Consensus 84 ~Y~C~A~N~~G~~~~~i~L~~~~~ 107 (109)
T cd05773 84 LFTCTAHNSLGEDSLDIQLVSTSR 107 (109)
T ss_pred EEEEEEEeCCccCcEEEEEEecCC
Confidence 999999999999999999988754
No 59
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.61 E-value=7.6e-15 Score=99.21 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=65.2
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSG 194 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~ 194 (202)
.+..|+++.|.|.+.|.|.|.+.|+|++..+........ ......|.|.++..+|+|.|+|.|.|..|...+.+.|.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGES---RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcccee---cCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 456799999999999999999999999988765433222 13357899999999999999999999999998888776
Q ss_pred e
Q psy5280 195 N 195 (202)
Q Consensus 195 V 195 (202)
|
T Consensus 82 v 82 (82)
T cd05856 82 V 82 (82)
T ss_pred C
Confidence 4
No 60
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.61 E-value=9.2e-15 Score=100.15 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=63.8
Q ss_pred CeEEEEEEEEeecCC--ceEEEeCCEEcccC---CcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy5280 120 ENSSLFWFVYGYPKP--KVSFYFNDELIEMG---GRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSG 194 (202)
Q Consensus 120 ~~v~L~C~v~G~P~P--~i~W~k~g~~l~~~---~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~ 194 (202)
+++.|.|.+.|.|.| .+.|+|+|..+... .++.........+.|.|.++...|+|.|+|.|.|.+|..++++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999998 45899999988642 2222211123457899999999999999999999999999999999
Q ss_pred eecC
Q psy5280 195 NPAQ 198 (202)
Q Consensus 195 V~~~ 198 (202)
|..+
T Consensus 81 V~~p 84 (85)
T cd04970 81 VRGP 84 (85)
T ss_pred EECC
Confidence 9865
No 61
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.61 E-value=5.6e-15 Score=100.04 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=65.5
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSG 194 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~ 194 (202)
.+.+|+.+.|.|.+.|. .|.+.|+|+|..|....++.+ . ...|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 5 ~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~----~-~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~ 78 (79)
T cd04973 5 SAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRI----T-GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN 78 (79)
T ss_pred EecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEE----e-CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence 77899999999999996 578999999999987777665 2 34799999999999999999999999988888776
Q ss_pred e
Q psy5280 195 N 195 (202)
Q Consensus 195 V 195 (202)
|
T Consensus 79 V 79 (79)
T cd04973 79 V 79 (79)
T ss_pred C
Confidence 5
No 62
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.61 E-value=5.6e-15 Score=100.66 Aligned_cols=78 Identities=14% Similarity=0.177 Sum_probs=62.2
Q ss_pred EEeccCCeeEEecCCeEEEEEEEEeecCC-ceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCC
Q psy5280 106 FLNQEHDTQYGIKNENSSLFWFVYGYPKP-KVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEH 184 (202)
Q Consensus 106 fi~~~~~~~~v~~G~~v~L~C~v~G~P~P-~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 184 (202)
|+..+.+. .+.+|+++.|.|.+.|.|.| .|+|+|+|..+... .. ...+.|.|..+ .|+|.|.|.|.|..
T Consensus 1 f~~~P~~~-~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~-----~~~s~L~i~~~--~d~g~Y~C~A~N~~ 70 (81)
T cd05749 1 FTVEPEDL-SVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PA-----PSPSVLNVPGL--NETSKFSCEAHNAK 70 (81)
T ss_pred CcCCCCce-EEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CC-----CCCCEEEEccc--cCCeEEEEEEEecc
Confidence 45567776 89999999999999999999 79999999988641 11 22457888877 47899999999999
Q ss_pred ceEEE-EEEE
Q psy5280 185 GTARQ-RVSS 193 (202)
Q Consensus 185 G~~~~-~~~L 193 (202)
|...+ .+.|
T Consensus 71 G~~~s~~a~~ 80 (81)
T cd05749 71 GVTTSRTGTV 80 (81)
T ss_pred CcEEeeeEEe
Confidence 97764 4444
No 63
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.60 E-value=2e-14 Score=101.14 Aligned_cols=89 Identities=24% Similarity=0.435 Sum_probs=70.4
Q ss_pred CCeEEeccCCeeEEecCCeEEEEEEEEeecCC-ceEEEeCCEEcccC--CcEEEEEee---CCeEEEEEccCCCCC-CEE
Q psy5280 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKP-KVSFYFNDELIEMG--GRYDSSYTR---NGQATLFINKMLDRD-VGM 175 (202)
Q Consensus 103 ~P~fi~~~~~~~~v~~G~~v~L~C~v~G~P~P-~i~W~k~g~~l~~~--~r~~i~~~~---~~~~~L~I~~~~~~D-~G~ 175 (202)
||.+ ..+... .+.+|+.+.|.|.+.|.|.| .|.|++++..+... .++.+.... ...+.|.|.++..+| .|.
T Consensus 2 pp~i-~~~~~~-~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~ 79 (98)
T cd05758 2 PPII-TSEATQ-YAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTS 79 (98)
T ss_pred CCeE-cCCCcE-EEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCcccccccee
Confidence 4554 445555 78999999999999999999 59999999988753 566663321 123589999999955 899
Q ss_pred EEEEEEeCCceEEEEEEE
Q psy5280 176 YEALASNEHGTARQRVSS 193 (202)
Q Consensus 176 Y~C~a~N~~G~~~~~~~L 193 (202)
|+|.|.|..|.+.+.+.|
T Consensus 80 Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 80 YNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEEcCCCcccEEEEe
Confidence 999999999999888776
No 64
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.60 E-value=1e-14 Score=101.13 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=60.2
Q ss_pred CCeEEEEEEEEeecCCceEEEeC----CEEcccCCc--EEEEEe------eCCeEEEEEccCCCCCCEEEEEEEEeCCce
Q psy5280 119 NENSSLFWFVYGYPKPKVSFYFN----DELIEMGGR--YDSSYT------RNGQATLFINKMLDRDVGMYEALASNEHGT 186 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P~i~W~k~----g~~l~~~~r--~~i~~~------~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 186 (202)
|+++.|.|.+.|.|.|.|+|+|+ +..+..... ..+... ....+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 68899999999999999999984 444433222 111100 112357999999999999999999999999
Q ss_pred EEEEEEEEee
Q psy5280 187 ARQRVSSGNP 196 (202)
Q Consensus 187 ~~~~~~L~V~ 196 (202)
..+++.|.|.
T Consensus 81 ~~~~a~L~V~ 90 (90)
T cd05858 81 SHHSAWLTVL 90 (90)
T ss_pred ccceEEEEEC
Confidence 9999999873
No 65
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.60 E-value=7.7e-15 Score=101.79 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=59.4
Q ss_pred CCeEEEEEEEEeecCCceEEEeCC----EEcccC--CcEEEEEe------eCCeEEEEEccCCCCCCEEEEEEEEeCCce
Q psy5280 119 NENSSLFWFVYGYPKPKVSFYFND----ELIEMG--GRYDSSYT------RNGQATLFINKMLDRDVGMYEALASNEHGT 186 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P~i~W~k~g----~~l~~~--~r~~i~~~------~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 186 (202)
|+++.|.|.+.|.|.|.|+|+|++ ..+... ....+... ......|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999964 333211 11111110 012357999999999999999999999999
Q ss_pred EEEEEEEEee
Q psy5280 187 ARQRVSSGNP 196 (202)
Q Consensus 187 ~~~~~~L~V~ 196 (202)
..+++.|.|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9999999873
No 66
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.59 E-value=1.8e-14 Score=100.28 Aligned_cols=78 Identities=22% Similarity=0.165 Sum_probs=65.1
Q ss_pred CeeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEE-E
Q psy5280 112 DTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ-R 190 (202)
Q Consensus 112 ~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~-~ 190 (202)
++ .+.+|+++.|.|.+.|. .|.|+|+|++..+... ++.+ ....+.|.|.++..+|+|.|.|.|.|..|...+ .
T Consensus 12 ~~-~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~ 85 (91)
T cd05740 12 NQ-PPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQL---SNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDP 85 (91)
T ss_pred cc-ccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEE---eCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeee
Confidence 44 78899999999999999 9999999999987653 4444 134568999999999999999999999998654 5
Q ss_pred EEEEe
Q psy5280 191 VSSGN 195 (202)
Q Consensus 191 ~~L~V 195 (202)
+.|.|
T Consensus 86 ~~L~V 90 (91)
T cd05740 86 YILNV 90 (91)
T ss_pred EEEEe
Confidence 66766
No 67
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.58 E-value=1.3e-14 Score=99.69 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=63.8
Q ss_pred CeEEEEEEEEeec--CCceEEEeCCEEccc---CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy5280 120 ENSSLFWFVYGYP--KPKVSFYFNDELIEM---GGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSG 194 (202)
Q Consensus 120 ~~v~L~C~v~G~P--~P~i~W~k~g~~l~~---~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~ 194 (202)
+++.|.|.+.+.| .+.+.|+|||+.|.. ..++.+.......+.|.|.++...|+|.|+|.|.|.+++.++++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 4689999998854 678899999999962 23444311112346899999999999999999999999999999999
Q ss_pred eecC
Q psy5280 195 NPAQ 198 (202)
Q Consensus 195 V~~~ 198 (202)
|..+
T Consensus 81 V~~p 84 (85)
T cd05853 81 VRGP 84 (85)
T ss_pred EecC
Confidence 9875
No 68
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.58 E-value=5.3e-14 Score=98.04 Aligned_cols=85 Identities=19% Similarity=0.222 Sum_probs=66.2
Q ss_pred ccCCeeEEecCCeEEEEEEEEeecCCceEEEe-CCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCc-e
Q psy5280 109 QEHDTQYGIKNENSSLFWFVYGYPKPKVSFYF-NDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG-T 186 (202)
Q Consensus 109 ~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k-~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G-~ 186 (202)
.+.+. .+..|+++.|.|.+.|.| +.+.|++ ++..+....++.+.......++|.|.++..+|+|.|+|.|.|..| .
T Consensus 6 ~p~~~-~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~ 83 (92)
T cd04977 6 VPSQG-EISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTE 83 (92)
T ss_pred ecCcE-EECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCc
Confidence 34455 788999999999999997 5999998 676666655555433334457899999999999999999999975 4
Q ss_pred EEEEEEEEe
Q psy5280 187 ARQRVSSGN 195 (202)
Q Consensus 187 ~~~~~~L~V 195 (202)
..+++.|.|
T Consensus 84 ~~~sv~l~~ 92 (92)
T cd04977 84 SEATVNLKI 92 (92)
T ss_pred ceeEEEEEC
Confidence 566666654
No 69
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.58 E-value=1.5e-14 Score=97.73 Aligned_cols=73 Identities=23% Similarity=0.293 Sum_probs=58.7
Q ss_pred CCeEEEEEEEEeecCCceEEEeCCE----Ec-ccCC---cEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEE
Q psy5280 119 NENSSLFWFVYGYPKPKVSFYFNDE----LI-EMGG---RYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQR 190 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P~i~W~k~g~----~l-~~~~---r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 190 (202)
|+++.|.|.+.|.|.|.++|+|++. .+ .... ++.. ...+.|.|.++..+|+|.|.|.|.|.+|...+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 76 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV----TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN 76 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEE----ccccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence 7889999999999999999999742 11 1111 1222 334689999999999999999999999999999
Q ss_pred EEEEe
Q psy5280 191 VSSGN 195 (202)
Q Consensus 191 ~~L~V 195 (202)
+.|+|
T Consensus 77 ~~l~v 81 (81)
T cd05765 77 FPLSV 81 (81)
T ss_pred EEEeC
Confidence 99876
No 70
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.57 E-value=2.7e-14 Score=95.67 Aligned_cols=74 Identities=23% Similarity=0.231 Sum_probs=61.8
Q ss_pred EEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEee
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGNP 196 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 196 (202)
+.|.|.+.|.|.|.+.|+|++..+....+..+... .....|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~-~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLI-ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEe-CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 46899999999999999999998876533322222 334579999999999999999999999999999999885
No 71
>KOG4194|consensus
Probab=99.56 E-value=1.7e-14 Score=127.32 Aligned_cols=153 Identities=21% Similarity=0.267 Sum_probs=122.3
Q ss_pred CCCCccCCeeeeccceee----------eeecCCCCCeeeecCCCee-----------cCCCCceeeeccccccCCCCCC
Q psy5280 41 REGYAQAPRFLNQEHDTQ----------EKLNPERPKFEPYLPPGVP-----------FHPDKSFYFPRDFDLERPPREG 99 (202)
Q Consensus 41 ~~~~~~~p~f~~~~~~~~----------~~~~~~~~~~~~w~~~g~~-----------~~p~~~~~~~~~~~ie~~~~~~ 99 (202)
+....++|.|+..++|.. |..+|+|.+.|.|.|+|.+ +-|+...+|+.++.+|+.|.|.
T Consensus 606 KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYt 685 (873)
T KOG4194|consen 606 KLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYT 685 (873)
T ss_pred EEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeE
Confidence 344567999998888732 6678999999999999976 2255556666888888888663
Q ss_pred -CC----------------CCCeEEeccCCeeEEecCCeEEEEEEEEeecC-CceEEEeCCEEcccCCcEEEEEeeCCeE
Q psy5280 100 -YA----------------QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPK-PKVSFYFNDELIEMGGRYDSSYTRNGQA 161 (202)
Q Consensus 100 -~~----------------~~P~fi~~~~~~~~v~~G~~v~L~C~v~G~P~-P~i~W~k~g~~l~~~~r~~i~~~~~~~~ 161 (202)
.+ ..|.|+.+..++ .|..|+++.|.|.+.|.|. |.+.|+|++++|.-..+... ..++.
T Consensus 686 C~A~n~AG~isanAtL~V~e~p~f~~PL~~~-~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f---~d~dQ 761 (873)
T KOG4194|consen 686 CTAQNVAGQISANATLTVLETPSFSIPLEDQ-LVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTF---PDGDQ 761 (873)
T ss_pred EeeeccccceeeceEEEEecCCcccccccce-EEEecceEEEEEecCCCCCCccccccCCCCceEEeecccC---CCCCe
Confidence 21 357787777787 9999999999999999998 99999999998876665544 24466
Q ss_pred EEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEeec
Q psy5280 162 TLFINKMLDRDVGMYEALASNEHGTARQRVSSGNPA 197 (202)
Q Consensus 162 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 197 (202)
.|.+.+...+|+|.|+|...|..|.......+.+..
T Consensus 762 llvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~ 797 (873)
T KOG4194|consen 762 LLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQ 797 (873)
T ss_pred EEEEEehhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence 788999999999999999999999988777666553
No 72
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.55 E-value=3.2e-14 Score=94.74 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=56.0
Q ss_pred EEEEEEEEeecCCceEEEeCCEEcccC-CcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIEMG-GRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSG 194 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~~~-~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~ 194 (202)
++|.|.+.|.|.|++.|+|++.++..+ .++.+ ...+|.|.++..+|+|.|+|.|.|.+........++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~-----~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV-----DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEe-----CCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 479999999999999999999998764 44443 245899999999999999999999987665555444
No 73
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.54 E-value=1e-13 Score=96.18 Aligned_cols=81 Identities=32% Similarity=0.386 Sum_probs=64.0
Q ss_pred CeEEeccCCeeEEe---cCCeEEEEEEEEeecCCceEEEeCCEEccc--CCcEEEEEeeCCeEEEEEccCCC-CCCEEEE
Q psy5280 104 PRFLNQEHDTQYGI---KNENSSLFWFVYGYPKPKVSFYFNDELIEM--GGRYDSSYTRNGQATLFINKMLD-RDVGMYE 177 (202)
Q Consensus 104 P~fi~~~~~~~~v~---~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~--~~r~~i~~~~~~~~~L~I~~~~~-~D~G~Y~ 177 (202)
|.|+..+.++ .+. .|.++.|.|.+.|.|.|.++|+|++..+.. ..++.+ ..+.|.|.++.. .|+|.|+
T Consensus 2 P~f~~~p~~~-~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~ 75 (91)
T cd04967 2 PVFEEQPDDT-IFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-----VGGNLVISNPSKAKDAGRYQ 75 (91)
T ss_pred CeeEeCCCCE-EccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE-----ECCEEEEecCCccCCCEEEE
Confidence 7788888876 433 346899999999999999999999998853 233333 235788888774 8999999
Q ss_pred EEEEeCCceEEEE
Q psy5280 178 ALASNEHGTARQR 190 (202)
Q Consensus 178 C~a~N~~G~~~~~ 190 (202)
|.|.|..|.+.+.
T Consensus 76 C~a~N~~G~~~S~ 88 (91)
T cd04967 76 CLASNIVGTVLSR 88 (91)
T ss_pred EEEEcCCCEEEec
Confidence 9999999987653
No 74
>KOG4222|consensus
Probab=99.53 E-value=2.5e-14 Score=132.95 Aligned_cols=191 Identities=17% Similarity=0.202 Sum_probs=132.6
Q ss_pred CCCCCCCCCcccccCCCCC-C----------CCCCCCCCCCCCCcccCCCC-CCCc--cCC----------------eee
Q psy5280 2 REKLNPERPKFEPYLPPGV-P----------FHPDKSFYFPRDFDLERPPR-EGYA--QAP----------------RFL 51 (202)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~r~~~-~~~~--~~p----------------~f~ 51 (202)
--|-+.+|||+|-|.++|. . +-|+++.+|++ .-=++++. +.+. +.. -.+
T Consensus 52 nc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~-~ahg~~a~~d~G~y~cvasn~~g~avSr~a~L~vavl 130 (1281)
T KOG4222|consen 52 NCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLR-LAHGKKAGHDHGVYSCVASNRLGEAVSRGASLIVAVL 130 (1281)
T ss_pred ecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEe-cccCCcccCCCceeEeeecCccceeeecCceEEEEEe
Confidence 3467899999999999993 2 34677777777 22333333 1110 000 000
Q ss_pred -----eccceee--------eee---cCCCCCeeeecCCCeecCC----------CCceeeeccccccCCCCCCC-----
Q psy5280 52 -----NQEHDTQ--------EKL---NPERPKFEPYLPPGVPFHP----------DKSFYFPRDFDLERPPREGY----- 100 (202)
Q Consensus 52 -----~~~~~~~--------~~~---~~~~~~~~~w~~~g~~~~p----------~~~~~~~~~~~ie~~~~~~~----- 100 (202)
.++.+++ .+| .+++.+++.|.|+|.++.- ...+.+.+.-..+.+.+.|+
T Consensus 131 rddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmv 210 (1281)
T KOG4222|consen 131 RDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMV 210 (1281)
T ss_pred chhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccc
Confidence 0111111 122 5678889999999998761 12223333344444444442
Q ss_pred ------------CCCCeEEeccCCeeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccC
Q psy5280 101 ------------AQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKM 168 (202)
Q Consensus 101 ------------~~~P~fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~ 168 (202)
...|.|...+.+. .|..|..+.|.|.+.|.|.|+|.|.|++..+.-+ ++.+. .++.+|.|.++
T Consensus 211 G~ReS~~A~lsv~e~P~f~~rp~~~-~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~-ry~i~---~d~qtl~i~r~ 285 (1281)
T KOG4222|consen 211 GERESIPARLSVQEKPWFWKRPKDL-AVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRS-RYSIL---DDTQTLRIDRV 285 (1281)
T ss_pred cccccccceeeeccCCccccccccc-eeecccccccccccCCCCCCceeeeccCCCCCcc-ceeee---ecccccccccc
Confidence 2578899889888 9999999999999999999999999987766544 34441 34589999999
Q ss_pred CCCCCEEEEEEEEeCCceEEEEEEEEeecC
Q psy5280 169 LDRDVGMYEALASNEHGTARQRVSSGNPAQ 198 (202)
Q Consensus 169 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~ 198 (202)
..-|+|.|.|.|.|.+|...+++.|+|.++
T Consensus 286 tp~deg~y~C~a~n~vG~l~asa~ltV~ap 315 (1281)
T KOG4222|consen 286 TPTDEGTYVCPAENLVGGLEASATLTVQAP 315 (1281)
T ss_pred CCCcccceeeeccccccccccccceEEecC
Confidence 999999999999999999999999999987
No 75
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.53 E-value=6.6e-14 Score=93.19 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=57.5
Q ss_pred EEEEEEEEe-ecCCceEEEeCCEEcccCCcEEE--EEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy5280 122 SSLFWFVYG-YPKPKVSFYFNDELIEMGGRYDS--SYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192 (202)
Q Consensus 122 v~L~C~v~G-~P~P~i~W~k~g~~l~~~~r~~i--~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 192 (202)
+.|.|.+.| .|.|.++|+|++..+..+.+... .......+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 468999999 99999999999999876543321 112233578999999999999999999999999887765
No 76
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.52 E-value=5.2e-14 Score=98.57 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=64.0
Q ss_pred EEecCCeEEEEEEEEe-----ecCCceEEEeCCEEccc----CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCc
Q psy5280 115 YGIKNENSSLFWFVYG-----YPKPKVSFYFNDELIEM----GGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G-----~P~P~i~W~k~g~~l~~----~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 185 (202)
.+.+|+.+.|.|.+.| .|.|.|.|+|++..+.. ..++.. ....|.|..+..+|+|.|+|.+.|..|
T Consensus 10 ~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-----~~~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 10 YVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-----QKDLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred EEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-----cCCeEEEccCCcccCeEEEEEEcCCCc
Confidence 7789999999999999 78999999999876432 222222 246899999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy5280 186 TARQRVSSGN 195 (202)
Q Consensus 186 ~~~~~~~L~V 195 (202)
..+.++.|.|
T Consensus 85 ~~~~~~~L~v 94 (94)
T cd05756 85 CMKVSISLTV 94 (94)
T ss_pred cEEEEEEEEC
Confidence 9999998876
No 77
>KOG4221|consensus
Probab=99.52 E-value=7.8e-15 Score=136.94 Aligned_cols=135 Identities=18% Similarity=0.185 Sum_probs=110.3
Q ss_pred eeecCCCCCeeeecCCCeecCCCCce--------eeeccccccCCCCC-CC----------------CCCCeEEeccCCe
Q psy5280 59 EKLNPERPKFEPYLPPGVPFHPDKSF--------YFPRDFDLERPPRE-GY----------------AQAPRFLNQEHDT 113 (202)
Q Consensus 59 ~~~~~~~~~~~~w~~~g~~~~p~~~~--------~~~~~~~ie~~~~~-~~----------------~~~P~fi~~~~~~ 113 (202)
|-+++.+.+++.|++||.++.-+... +.+.....++.|.| |. ..+|.|+..+.+.
T Consensus 259 Cvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l 338 (1381)
T KOG4221|consen 259 CVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTL 338 (1381)
T ss_pred EEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcce
Confidence 77899999999999999998765311 22234444444543 31 1479999999888
Q ss_pred eEEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy5280 114 QYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSS 193 (202)
Q Consensus 114 ~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 193 (202)
...++.++.|+|.+.|.|.|.+.|+|+|..+.+++++++ ...+.|.|..+...|.|.|.|.+.|.+|.+++.+.|
T Consensus 339 -~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki----~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l 413 (1381)
T KOG4221|consen 339 -VAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKI----VGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQL 413 (1381)
T ss_pred -eeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEe----cCCCCcEEEEEecccchhhhhhhccCcccccchhhh
Confidence 888899999999999999999999999999999999888 445559999999999999999999999999999988
Q ss_pred EeecC
Q psy5280 194 GNPAQ 198 (202)
Q Consensus 194 ~V~~~ 198 (202)
.|..+
T Consensus 414 ~vv~~ 418 (1381)
T KOG4221|consen 414 EVVPQ 418 (1381)
T ss_pred eeccC
Confidence 65543
No 78
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.51 E-value=3.7e-13 Score=91.29 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=67.0
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSG 194 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~ 194 (202)
.+..|+.+.|.|.+.|.|.|.+.|++++..+.....+...........|.|.++..+|.|.|.|.+.|..|..+.++.|.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 56789999999999999999999999999887554443322223346899999999999999999999999998888876
Q ss_pred e
Q psy5280 195 N 195 (202)
Q Consensus 195 V 195 (202)
|
T Consensus 85 v 85 (85)
T cd05729 85 V 85 (85)
T ss_pred C
Confidence 4
No 79
>KOG4194|consensus
Probab=99.51 E-value=7.3e-14 Score=123.39 Aligned_cols=94 Identities=19% Similarity=0.244 Sum_probs=79.8
Q ss_pred CCCCeEEeccCCeeEEecCCeEEEEEEEEeecCCceEEEeCCEE-ccc--CCcEEEEEeeCCeEEEEEccCCCCCCEEEE
Q psy5280 101 AQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDEL-IEM--GGRYDSSYTRNGQATLFINKMLDRDVGMYE 177 (202)
Q Consensus 101 ~~~P~fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~-l~~--~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~ 177 (202)
.++|.|+..|.+. +...|+.++|.|.++|.|.|+|.|.|+|.. ... ..|.++. ...-.+.|.++..+|.|.|+
T Consensus 610 ~~~PsFtktP~dl-tl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vm---pedd~f~Itnvk~eD~GiYt 685 (873)
T KOG4194|consen 610 NQAPSFTKTPEDL-TLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVM---PEDDVFFITNVKIEDQGIYT 685 (873)
T ss_pred eccCccccCcccc-eeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeec---CCCCEEEEecccccccceeE
Confidence 3789999999999 999999999999999999999999999876 322 3344431 33456889999999999999
Q ss_pred EEEEeCCceEEEEEEEEeecC
Q psy5280 178 ALASNEHGTARQRVSSGNPAQ 198 (202)
Q Consensus 178 C~a~N~~G~~~~~~~L~V~~~ 198 (202)
|.|.|.+|..++.+.|+|...
T Consensus 686 C~A~n~AG~isanAtL~V~e~ 706 (873)
T KOG4194|consen 686 CTAQNVAGQISANATLTVLET 706 (873)
T ss_pred EeeeccccceeeceEEEEecC
Confidence 999999999999999998754
No 80
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.50 E-value=1e-13 Score=93.66 Aligned_cols=70 Identities=23% Similarity=0.374 Sum_probs=54.2
Q ss_pred EEEEEEEEeecCCceEEEeCCEEcc--------cCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceE-EEEEE
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIE--------MGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA-RQRVS 192 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~--------~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~ 192 (202)
+.|.|.+.|.|.|.+.|+|++.... ...++.+ ...++|.|.++..+|+|.|.|.|.|..|.. +..+.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~ 76 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL----LSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMV 76 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE----ecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEE
Confidence 5799999999999999999743211 2344444 235789999999999999999999999987 55556
Q ss_pred EEe
Q psy5280 193 SGN 195 (202)
Q Consensus 193 L~V 195 (202)
|.|
T Consensus 77 l~~ 79 (79)
T cd05734 77 LTV 79 (79)
T ss_pred EeC
Confidence 554
No 81
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.49 E-value=1e-13 Score=93.30 Aligned_cols=65 Identities=29% Similarity=0.312 Sum_probs=51.9
Q ss_pred EEEEEEEEeecCCceEEEeCCEEcccCC--cEEEEEeeCCeEEEEEccCCC----CCCEEEEEEEEeCCceEEE
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIEMGG--RYDSSYTRNGQATLFINKMLD----RDVGMYEALASNEHGTARQ 189 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~~~~--r~~i~~~~~~~~~L~I~~~~~----~D~G~Y~C~a~N~~G~~~~ 189 (202)
+.|.|.+.|.|.|.++|+|++..+.... ++.+ ....+.|.|..+.. +|+|.|+|.|.|..|.+.+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~---~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTM---KPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEE---eCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 4799999999999999999999886433 3333 13457888888754 6899999999999998754
No 82
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.48 E-value=1.9e-13 Score=92.09 Aligned_cols=66 Identities=26% Similarity=0.323 Sum_probs=51.2
Q ss_pred EEEEEEEEeecCCceEEEeCCEEcccC--CcEEEEEeeCCeEEEEEccCCC----CCCEEEEEEEEeCCceEEEE
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIEMG--GRYDSSYTRNGQATLFINKMLD----RDVGMYEALASNEHGTARQR 190 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~~~--~r~~i~~~~~~~~~L~I~~~~~----~D~G~Y~C~a~N~~G~~~~~ 190 (202)
+.|.|.+.|.|.|+++|+|++..+... .++.+ ....++|.|..+.. .|+|.|+|.|.|..|.+.+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~---~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTM---KPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEE---eCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 479999999999999999999987432 33332 13356788877764 37899999999999987654
No 83
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.47 E-value=4.1e-13 Score=90.52 Aligned_cols=66 Identities=24% Similarity=0.253 Sum_probs=51.7
Q ss_pred EEEEEEEEeecCCceEEEeCCEEcc--cCCcEEEEEeeCCeEEEEEccCCC----CCCEEEEEEEEeCCceEEEE
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIE--MGGRYDSSYTRNGQATLFINKMLD----RDVGMYEALASNEHGTARQR 190 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~--~~~r~~i~~~~~~~~~L~I~~~~~----~D~G~Y~C~a~N~~G~~~~~ 190 (202)
+.|.|.+.|.|.|.++|+|++..+. ...++.+ ....+.|.|..+.. .|+|.|+|.|.|..|.+.+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~---~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSM---RRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEE---eCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4799999999999999999998764 3444544 13457888887642 46999999999999987655
No 84
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.45 E-value=1.2e-12 Score=91.77 Aligned_cols=83 Identities=8% Similarity=-0.021 Sum_probs=63.6
Q ss_pred CCeeEEecCCeEEEEEEEEeecCCceEEEeCC--------EEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEe
Q psy5280 111 HDTQYGIKNENSSLFWFVYGYPKPKVSFYFND--------ELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASN 182 (202)
Q Consensus 111 ~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g--------~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 182 (202)
++. .+.+|+++.|.|.+.|.|.|.|.|++.+ .......|+.+........+|.|.++..+|+|.|.|.+.+
T Consensus 5 ~~v-~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 5 QNV-TVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred ceE-EEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 344 8899999999999999999999998632 2222345666533333457899999999999999999998
Q ss_pred CCceEEEEEEEEe
Q psy5280 183 EHGTARQRVSSGN 195 (202)
Q Consensus 183 ~~G~~~~~~~L~V 195 (202)
..+ ....+.|.|
T Consensus 84 ~~~-~~~~~~l~v 95 (95)
T cd07701 84 MPV-KTSKAYLTV 95 (95)
T ss_pred ecC-ccEEEEEEC
Confidence 544 367777765
No 85
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.42 E-value=1e-12 Score=89.68 Aligned_cols=77 Identities=18% Similarity=0.107 Sum_probs=60.1
Q ss_pred CCeEEEEEEEEee--cCCceEEEeCCEEcccCC----cEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy5280 119 NENSSLFWFVYGY--PKPKVSFYFNDELIEMGG----RYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192 (202)
Q Consensus 119 G~~v~L~C~v~G~--P~P~i~W~k~g~~l~~~~----r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 192 (202)
|+++.|.|.+.|. |.|.+.|.+++..+.... +..........+.|.|.++..+|+|.|+|.|.|..|..++++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999999 889999998876553221 1111011123468999999999999999999999999999998
Q ss_pred EEe
Q psy5280 193 SGN 195 (202)
Q Consensus 193 L~V 195 (202)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 876
No 86
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.41 E-value=1.5e-12 Score=89.12 Aligned_cols=79 Identities=13% Similarity=0.037 Sum_probs=64.6
Q ss_pred EeccCCeeEEecCCeEEEEEEEEe-ecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCc
Q psy5280 107 LNQEHDTQYGIKNENSSLFWFVYG-YPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185 (202)
Q Consensus 107 i~~~~~~~~v~~G~~v~L~C~v~G-~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 185 (202)
+..+... .+.+|++++|.|.+.+ .|.|.+.|++++..+... . . ...+.|.|.++..+|+|.|.|.|.|..|
T Consensus 5 ~~~p~~~-~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~-~----~~~~~L~I~~v~~~DsG~Y~C~a~n~~g 76 (85)
T cd05754 5 VEEPRSQ-EVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--A-M----DFNGILTIRNVQLSDAGTYVCTGSNMLD 76 (85)
T ss_pred ecCCCce-EEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--c-c----ccCCEEEECCCCHHHCEEEEEEEeccCC
Confidence 4455555 8889999999999975 788999999998665332 1 1 2246899999999999999999999999
Q ss_pred eEEEEEEE
Q psy5280 186 TARQRVSS 193 (202)
Q Consensus 186 ~~~~~~~L 193 (202)
..++++.|
T Consensus 77 ~~~~~~~l 84 (85)
T cd05754 77 TDEATATL 84 (85)
T ss_pred eEeEEEEE
Confidence 99998876
No 87
>KOG4222|consensus
Probab=99.41 E-value=6e-13 Score=123.92 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=107.7
Q ss_pred CCCCccCCeeeeccce----------eeeeecCCCCCeeeecCCCeecC-----------CCCceeeecc----ccc-cC
Q psy5280 41 REGYAQAPRFLNQEHD----------TQEKLNPERPKFEPYLPPGVPFH-----------PDKSFYFPRD----FDL-ER 94 (202)
Q Consensus 41 ~~~~~~~p~f~~~~~~----------~~~~~~~~~~~~~~w~~~g~~~~-----------p~~~~~~~~~----~~i-e~ 94 (202)
.++.-++|+.+..++| .+|+.+|.+++.|.|+|+|.... |+.++++... ... +.
T Consensus 25 ~r~qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~ 104 (1281)
T KOG4222|consen 25 LRAQDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDH 104 (1281)
T ss_pred cccccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCC
Confidence 3455668888877666 44999999999999999995322 3455554221 011 22
Q ss_pred CCCCCCC------------------CCCeEEeccCCeeEEecCCeEEEEEE-EEeecCCceEEEeCCEEcc--cCCcEEE
Q psy5280 95 PPREGYA------------------QAPRFLNQEHDTQYGIKNENSSLFWF-VYGYPKPKVSFYFNDELIE--MGGRYDS 153 (202)
Q Consensus 95 ~~~~~~~------------------~~P~fi~~~~~~~~v~~G~~v~L~C~-v~G~P~P~i~W~k~g~~l~--~~~r~~i 153 (202)
+.++|.+ ..--|-..+.++ .+..|+.++|+|. -.|.|.|.++|.|+|..+. ...++.+
T Consensus 105 G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~-~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~l 183 (1281)
T KOG4222|consen 105 GVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDV-QAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIAL 183 (1281)
T ss_pred ceeEeeecCccceeeecCceEEEEEechhcccCcccc-cccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEE
Confidence 2233321 111233345565 6778999999997 4799999999999999987 3344444
Q ss_pred EEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceE-EEEEEEEeecC
Q psy5280 154 SYTRNGQATLFINKMLDRDVGMYEALASNEHGTA-RQRVSSGNPAQ 198 (202)
Q Consensus 154 ~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~ 198 (202)
...+.|.|.++...|+|.|.|+|+|.+|.. +..++|+|.+.
T Consensus 184 ----isgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~ 225 (1281)
T KOG4222|consen 184 ----ISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEK 225 (1281)
T ss_pred ----ecCCcEEEeccccCCCceeeeeecccccccccccceeeeccC
Confidence 456889999999999999999999999976 44578887754
No 88
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.41 E-value=5.3e-12 Score=88.52 Aligned_cols=82 Identities=10% Similarity=-0.021 Sum_probs=62.2
Q ss_pred CeeEEecCCeEEEEEEEEeecCCceEEEeCCEEc--------ccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy5280 112 DTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELI--------EMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNE 183 (202)
Q Consensus 112 ~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l--------~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 183 (202)
+. .+.+|+++.|.|.+.|.|.|.|.|+|++..+ ....++.+.........|.|.++..+|+|.|+|.+..
T Consensus 6 ~~-tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t- 83 (95)
T cd05882 6 DE-TVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT- 83 (95)
T ss_pred cE-EEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-
Confidence 44 8899999999999999999999999987533 1234555433333357999999999999999999988
Q ss_pred CceEEEEEEEEe
Q psy5280 184 HGTARQRVSSGN 195 (202)
Q Consensus 184 ~G~~~~~~~L~V 195 (202)
.-...+.+.|+|
T Consensus 84 ~~~~~~~~~~~v 95 (95)
T cd05882 84 MPVRTAKATVTV 95 (95)
T ss_pred eccccEEEEEEC
Confidence 334455566554
No 89
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.41 E-value=5.8e-12 Score=88.71 Aligned_cols=89 Identities=22% Similarity=0.426 Sum_probs=69.8
Q ss_pred CCeEEeccCCeeEEecCCeEEEEEEEEeecCCc-eEEEeCCEEccc--CCcEEEEEee---CCeEEEEEccCCCCC-CEE
Q psy5280 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPK-VSFYFNDELIEM--GGRYDSSYTR---NGQATLFINKMLDRD-VGM 175 (202)
Q Consensus 103 ~P~fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~-i~W~k~g~~l~~--~~r~~i~~~~---~~~~~L~I~~~~~~D-~G~ 175 (202)
||.+ .....+ .+.+|+++.|.|.+.+.|.|. |.|.+++..|.. +.++.+.... ...+.|.|.++...| .|.
T Consensus 2 pP~i-~~~~s~-~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 2 PPII-SSEQVQ-YAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CCEE-ecCceE-EEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence 4544 344444 889999999999999999985 689888877754 3577764432 245789999998877 689
Q ss_pred EEEEEEeCCceEEEEEEE
Q psy5280 176 YEALASNEHGTARQRVSS 193 (202)
Q Consensus 176 Y~C~a~N~~G~~~~~~~L 193 (202)
|.|.|.|..|+.+..+.|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999999887766
No 90
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.40 E-value=2.7e-12 Score=88.49 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=61.3
Q ss_pred cCCeeEEecCCeEEEEEEEEeecCCceEEEeCCEEcccC-CcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCC---c
Q psy5280 110 EHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMG-GRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEH---G 185 (202)
Q Consensus 110 ~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~-~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~---G 185 (202)
|.+. .+..|+++.|.|.+.+ |.|.|.|++||..|..+ .++.+ . ...|.|.++..+|+|.|+|.|.+.. |
T Consensus 3 P~~~-~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~----~-~~~L~I~nv~~~DsG~Y~C~a~e~~~~~~ 75 (87)
T cd05873 3 PRQR-TFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL----Y-RDGLLIFNASEADAGRYQCLSVEKSKAKL 75 (87)
T ss_pred cceE-EEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE----E-CCcEEEeCCCHHHCEEEEEEEEecccCce
Confidence 3445 8889999999999864 77899999999999865 45544 2 3569999999999999999999975 5
Q ss_pred eEEEEEEEE
Q psy5280 186 TARQRVSSG 194 (202)
Q Consensus 186 ~~~~~~~L~ 194 (202)
-...-+.+.
T Consensus 76 ~~~~~~~~~ 84 (87)
T cd05873 76 FTQTVAKYV 84 (87)
T ss_pred eEeEEEeee
Confidence 555444443
No 91
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.38 E-value=3.7e-12 Score=85.27 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=55.1
Q ss_pred EEEEEEEEe-ecCCceEEEeCCEEcccC----CcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy5280 122 SSLFWFVYG-YPKPKVSFYFNDELIEMG----GRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192 (202)
Q Consensus 122 v~L~C~v~G-~P~P~i~W~k~g~~l~~~----~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 192 (202)
+.|.|.+.+ .|.|.+.|+|+++.+... .++.+ ......+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKI-RKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEE-EeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999875 688999999999988632 22333 22234578999999999999999999999999887764
No 92
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.34 E-value=4.2e-12 Score=85.83 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=58.4
Q ss_pred eEEeccCCeeEEecCCeEEEEEEEEeecCC-ceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy5280 105 RFLNQEHDTQYGIKNENSSLFWFVYGYPKP-KVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNE 183 (202)
Q Consensus 105 ~fi~~~~~~~~v~~G~~v~L~C~v~G~P~P-~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 183 (202)
.+...|... .+.+|+++.|.|.+.|.|.+ .+.|+||+..+.. ....|.|.++ .+|+|.|+|.|.|.
T Consensus 2 vv~~~P~~~-~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-----------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 2 VVSLDPPWT-TIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-----------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eEEeCCCCe-EeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 344455555 88899999999999999875 6999999987631 2457889999 99999999999986
Q ss_pred CceEEEEEEEEe
Q psy5280 184 HGTARQRVSSGN 195 (202)
Q Consensus 184 ~G~~~~~~~L~V 195 (202)
..+..+.|.|
T Consensus 69 --~~S~~v~l~V 78 (78)
T cd05752 69 --SLSDPVHLEV 78 (78)
T ss_pred --cCCCCEEEeC
Confidence 4444455543
No 93
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.34 E-value=2.8e-11 Score=82.81 Aligned_cols=77 Identities=19% Similarity=0.169 Sum_probs=57.9
Q ss_pred CCeEEEEEEEEeecCCceEEEeCCEEcccCC----cEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCc--eEEEEEE
Q psy5280 119 NENSSLFWFVYGYPKPKVSFYFNDELIEMGG----RYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG--TARQRVS 192 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~----r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G--~~~~~~~ 192 (202)
|+++.|.|.+.|.|.|.+.|+++++...... +..+. .......|.|.++..+|+|.|.|.|.|..+ ....++.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVP-ATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecC-CcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 7899999999999999999998776432211 11110 011246899999999999999999999887 6667777
Q ss_pred EEee
Q psy5280 193 SGNP 196 (202)
Q Consensus 193 L~V~ 196 (202)
|+|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 7764
No 94
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.33 E-value=1.1e-11 Score=86.41 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=61.2
Q ss_pred eEEecCCeEEEEEEEEee-----cCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEE
Q psy5280 114 QYGIKNENSSLFWFVYGY-----PKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTAR 188 (202)
Q Consensus 114 ~~v~~G~~v~L~C~v~G~-----P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 188 (202)
+.+.+|.++.|.|...+. |.|.+.|+|++..+....+... ..+.|.|.++..+|+|.|+|.|.|..|...
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-----cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 377889999999987542 5789999999999876544322 457899999999999999999999998776
Q ss_pred EEEEEE
Q psy5280 189 QRVSSG 194 (202)
Q Consensus 189 ~~~~L~ 194 (202)
..+.++
T Consensus 80 ~~~t~t 85 (92)
T cd05757 80 YNVTRT 85 (92)
T ss_pred EEEEEE
Confidence 555444
No 95
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.32 E-value=1.2e-11 Score=85.39 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=61.2
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCCEEcccC----CcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCC-ceEEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMG----GRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEH-GTARQ 189 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~----~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~-G~~~~ 189 (202)
.+.+|+++.|.|.+.+ |.+.+.|+|++..+... .++.. . ...|.|.++..+|+|.|.|.|.|.. +...+
T Consensus 7 ~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~----~-~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~ 80 (89)
T cd04979 7 TVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV----T-EDGLLIRSVSPADAGVYTCQSVEHGFKQTLA 80 (89)
T ss_pred EEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE----c-CCCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence 7889999999999987 88999999999877653 23333 2 3458999999999999999998765 45566
Q ss_pred EEEEEeec
Q psy5280 190 RVSSGNPA 197 (202)
Q Consensus 190 ~~~L~V~~ 197 (202)
+..|.|.+
T Consensus 81 ~~~l~V~~ 88 (89)
T cd04979 81 TYSLNVLE 88 (89)
T ss_pred EEEEEEec
Confidence 67777754
No 96
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.28 E-value=1.1e-11 Score=86.80 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=64.0
Q ss_pred CeEEeccCCeeEEecCCeEEEEEE-EEeecCCceEEEeCCEE-cccCCcEEEEEeeCCeEEEEEccCCCCCCE-EEEEEE
Q psy5280 104 PRFLNQEHDTQYGIKNENSSLFWF-VYGYPKPKVSFYFNDEL-IEMGGRYDSSYTRNGQATLFINKMLDRDVG-MYEALA 180 (202)
Q Consensus 104 P~fi~~~~~~~~v~~G~~v~L~C~-v~G~P~P~i~W~k~g~~-l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G-~Y~C~a 180 (202)
|.|.........+.+|+.+.|.|. ..|.|.|.|.|++++.. +..+.|+.+ ...+.|.|.++..+|+| .|.|.|
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~----~~~GnL~fs~v~~~D~g~~Y~C~a 78 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSM----GQNGNLYFANVEEQDSHPDYICHA 78 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEE----CCCceEEEEEEehhhCCCCeEEEE
Confidence 455544434448999999999997 69999999999988654 444667666 55689999999999999 799999
Q ss_pred EeCCceE
Q psy5280 181 SNEHGTA 187 (202)
Q Consensus 181 ~N~~G~~ 187 (202)
.|.+...
T Consensus 79 ~~~~~~~ 85 (95)
T cd05845 79 HFPGLRT 85 (95)
T ss_pred Ecccccc
Confidence 9987544
No 97
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.24 E-value=1.1e-10 Score=81.53 Aligned_cols=80 Identities=9% Similarity=0.010 Sum_probs=59.5
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCCEEc--------ccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCce
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDELI--------EMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGT 186 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l--------~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 186 (202)
.+.+|+++.|.|.+.+.|.+.+.|++.+..+ ....++.+.........|.|.++..+|+|.|.|.+.+...
T Consensus 8 ~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~- 86 (95)
T cd05717 8 TVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV- 86 (95)
T ss_pred EEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC-
Confidence 7889999999999999999999998633211 1235665532223456899999999999999999998763
Q ss_pred EEEEEEEEe
Q psy5280 187 ARQRVSSGN 195 (202)
Q Consensus 187 ~~~~~~L~V 195 (202)
..+.+.|+|
T Consensus 87 ~~~~~~~~v 95 (95)
T cd05717 87 QTAKATVTV 95 (95)
T ss_pred ceEEEEEEC
Confidence 355666654
No 98
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.24 E-value=5.8e-11 Score=74.79 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=52.4
Q ss_pred cCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCc
Q psy5280 118 KNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185 (202)
Q Consensus 118 ~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 185 (202)
+|+++.|.|.+.+.|.+.+.|++++..+.. .... ......|.|.++...|+|.|.|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRL---SASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEE---ecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 488999999999999999999999988872 2111 13456899999999999999999999875
No 99
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.23 E-value=1.4e-10 Score=93.62 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=56.9
Q ss_pred EEecCCeEEEEEEEE-----eecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCC
Q psy5280 115 YGIKNENSSLFWFVY-----GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEH 184 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~-----G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 184 (202)
.+.+|+++.|.|.+. |.|.|+++|+|+++.|..+.++.+. .....|.|.++..+|+|.|+|.|....
T Consensus 140 ~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~---~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 140 QFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLR---NNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred eEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEe---CCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 667899999999986 3568999999999999877777652 335689999999999999999999875
No 100
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.23 E-value=9.7e-11 Score=81.43 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=59.7
Q ss_pred eEEecCCeEEEEEEEEeecCCceEEEeCC--EEc----ccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEE-eCCce
Q psy5280 114 QYGIKNENSSLFWFVYGYPKPKVSFYFND--ELI----EMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALAS-NEHGT 186 (202)
Q Consensus 114 ~~v~~G~~v~L~C~v~G~P~P~i~W~k~g--~~l----~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~-N~~G~ 186 (202)
+.+.+|+++.|.|.. +.|.|.++|+|.. ..+ ....++.. ....|.|.++..+|+|.|+|.|. |..+.
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-----~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~ 79 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH-----TERGLLLRSLQRSDAGVYTCTAVEHSFSQ 79 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE-----ecCeEEEeeCChhHCEEEEEEEEccCCeE
Confidence 478899999999996 5899999999842 221 12334443 23569999999999999999998 57777
Q ss_pred EEEEEEEEeec
Q psy5280 187 ARQRVSSGNPA 197 (202)
Q Consensus 187 ~~~~~~L~V~~ 197 (202)
....+.|.|..
T Consensus 80 ~~~~~~l~v~~ 90 (91)
T cd05871 80 TLAKYTLHVIE 90 (91)
T ss_pred EEEEEEEEEec
Confidence 77788888763
No 101
>smart00409 IG Immunoglobulin.
Probab=99.22 E-value=5.2e-10 Score=74.35 Aligned_cols=80 Identities=28% Similarity=0.408 Sum_probs=67.5
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeC-CEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFN-DELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSS 193 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~-g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 193 (202)
.+..|+++.|.|.+.+.+.+.+.|+++ +..+....++.+.... ....|.|.++...|+|.|.|.+.|..+.....+.|
T Consensus 5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00409 5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSG-SNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcC-CeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 678899999999999998899999998 8888766666663322 25789999999999999999999999988877777
Q ss_pred Ee
Q psy5280 194 GN 195 (202)
Q Consensus 194 ~V 195 (202)
.|
T Consensus 84 ~V 85 (86)
T smart00409 84 TV 85 (86)
T ss_pred EE
Confidence 66
No 102
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.22 E-value=5.2e-10 Score=74.35 Aligned_cols=80 Identities=28% Similarity=0.408 Sum_probs=67.5
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeC-CEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFN-DELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSS 193 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~-g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 193 (202)
.+..|+++.|.|.+.+.+.+.+.|+++ +..+....++.+.... ....|.|.++...|+|.|.|.+.|..+.....+.|
T Consensus 5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00410 5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSG-SNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcC-CeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 678899999999999998899999998 8888766666663322 25789999999999999999999999988877777
Q ss_pred Ee
Q psy5280 194 GN 195 (202)
Q Consensus 194 ~V 195 (202)
.|
T Consensus 84 ~V 85 (86)
T smart00410 84 TV 85 (86)
T ss_pred EE
Confidence 66
No 103
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.21 E-value=2.7e-11 Score=84.88 Aligned_cols=76 Identities=24% Similarity=0.238 Sum_probs=59.2
Q ss_pred ccCCeeEEecCCeEEEEEE-EEeecCCceEEEeCCEEc--ccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCc
Q psy5280 109 QEHDTQYGIKNENSSLFWF-VYGYPKPKVSFYFNDELI--EMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185 (202)
Q Consensus 109 ~~~~~~~v~~G~~v~L~C~-v~G~P~P~i~W~k~g~~l--~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 185 (202)
...+...+.+|+.+.|.|. -.|.|.|.+.|+|++..+ ....+..+. ...+.|.|.++..+|+|.|+|.|.|.+.
T Consensus 8 ~~~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~---~~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 8 EERDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVS---QTNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred CCcCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEe---CCCCcEEEeecCHhhCceeEEEEEeccc
Confidence 3344447889999999996 478999999999998754 233333331 3468999999999999999999999876
Q ss_pred eE
Q psy5280 186 TA 187 (202)
Q Consensus 186 ~~ 187 (202)
..
T Consensus 85 ~~ 86 (96)
T cd05727 85 TK 86 (96)
T ss_pred CC
Confidence 54
No 104
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.20 E-value=5.3e-10 Score=94.98 Aligned_cols=79 Identities=16% Similarity=0.089 Sum_probs=58.8
Q ss_pred eccCCeeEEecCCeEEEEEEEEeecCC---ceEEEeCCEEcccC-----CcEEEEEee-------CCeEEEEEccCCCCC
Q psy5280 108 NQEHDTQYGIKNENSSLFWFVYGYPKP---KVSFYFNDELIEMG-----GRYDSSYTR-------NGQATLFINKMLDRD 172 (202)
Q Consensus 108 ~~~~~~~~v~~G~~v~L~C~v~G~P~P---~i~W~k~g~~l~~~-----~r~~i~~~~-------~~~~~L~I~~~~~~D 172 (202)
..+.+. .+..|+.+.|.|.+.|.|.| .+.|+|||..|... .++.+.... .....|.|.++..+|
T Consensus 225 ~~p~~~-~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D 303 (326)
T PHA02785 225 QLPEGV-VTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEED 303 (326)
T ss_pred cCCCcE-EecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhc
Confidence 334454 66789999999999999974 79999999988542 133221100 113579999999999
Q ss_pred CEEEEEEEEeCCceE
Q psy5280 173 VGMYEALASNEHGTA 187 (202)
Q Consensus 173 ~G~Y~C~a~N~~G~~ 187 (202)
+|.|+|.|.|..|..
T Consensus 304 ~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 304 ATTFTCMAFTIPSIS 318 (326)
T ss_pred CeeeEEEEEeccCce
Confidence 999999999988543
No 105
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.19 E-value=3.8e-10 Score=79.47 Aligned_cols=83 Identities=17% Similarity=0.190 Sum_probs=67.9
Q ss_pred eEEecCCeEEEEEEEEeecCCc-eEEEeCCEEcccCCcEEEEEeeC----CeEEEEEccCCCCCCEEEEEEEEeCCceEE
Q psy5280 114 QYGIKNENSSLFWFVYGYPKPK-VSFYFNDELIEMGGRYDSSYTRN----GQATLFINKMLDRDVGMYEALASNEHGTAR 188 (202)
Q Consensus 114 ~~v~~G~~v~L~C~v~G~P~P~-i~W~k~g~~l~~~~r~~i~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 188 (202)
+.|.+|+++.|.|.+.++|.|+ +.|.+++..+............. ..+.|.+..+..+|+|.|+|.|.|..++++
T Consensus 13 ~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s 92 (101)
T cd05860 13 IFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASAS 92 (101)
T ss_pred EEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEE
Confidence 4789999999999999999998 99999988775433311222211 236799999999999999999999999999
Q ss_pred EEEEEEee
Q psy5280 189 QRVSSGNP 196 (202)
Q Consensus 189 ~~~~L~V~ 196 (202)
.++.|.|.
T Consensus 93 ~tF~l~v~ 100 (101)
T cd05860 93 VTFNVYVN 100 (101)
T ss_pred EEEEEEEe
Confidence 99999875
No 106
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.13 E-value=5.4e-10 Score=76.77 Aligned_cols=79 Identities=15% Similarity=0.033 Sum_probs=58.5
Q ss_pred CCeEEEEEEEEeecCC--ceEEEeCCEEccc---CC--cEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEE
Q psy5280 119 NENSSLFWFVYGYPKP--KVSFYFNDELIEM---GG--RYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P--~i~W~k~g~~l~~---~~--r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 191 (202)
|+++.|.|.+.|.+.+ .+.|...+..+.. .. +..........+.|.|.++...|+|.|+|.|.|..|...+++
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 7899999999987755 6699887754321 11 111100012356899999999999999999999999999999
Q ss_pred EEEeec
Q psy5280 192 SSGNPA 197 (202)
Q Consensus 192 ~L~V~~ 197 (202)
.|.|.+
T Consensus 81 ~~~V~~ 86 (86)
T cd05862 81 IVIVHE 86 (86)
T ss_pred EEEEeC
Confidence 998863
No 107
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.12 E-value=3.5e-10 Score=77.23 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=53.7
Q ss_pred EEecCCeEEEEEEEE-eecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEE
Q psy5280 115 YGIKNENSSLFWFVY-GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTAR 188 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~-G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 188 (202)
.+.+|++++|.|.+. +.+.+.+.|+|++..+... .....|.|..+..+|+|.|.|.|.|..|...
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~---------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS---------HSNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc---------CCCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 678999999999985 4667789999999866421 2246799999999999999999999998543
No 108
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.10 E-value=1.3e-09 Score=72.59 Aligned_cols=70 Identities=29% Similarity=0.370 Sum_probs=56.3
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCc-eEEEEEEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG-TARQRVSS 193 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~L 193 (202)
.+.+|+.+.|.|.+.|.|.+.+.|++++..+..+. + .|.+..+...|.|.|+|.+.|..+ ..+.++.|
T Consensus 10 ~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~----------~-~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v 78 (80)
T PF13895_consen 10 SVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ----------N-GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV 78 (80)
T ss_dssp EEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES----------S-EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred EEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee----------e-eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence 67899999999999999999999999987765321 1 166788889999999999999665 44556666
Q ss_pred Ee
Q psy5280 194 GN 195 (202)
Q Consensus 194 ~V 195 (202)
.|
T Consensus 79 ~V 80 (80)
T PF13895_consen 79 TV 80 (80)
T ss_dssp EE
T ss_pred eC
Confidence 54
No 109
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.08 E-value=9.4e-10 Score=93.49 Aligned_cols=120 Identities=7% Similarity=-0.027 Sum_probs=78.2
Q ss_pred cCCCCCeeeecCCCeecC-----CCCc-eeeeccccccCCCCC-CCC------------------CCCeEEeccCCeeEE
Q psy5280 62 NPERPKFEPYLPPGVPFH-----PDKS-FYFPRDFDLERPPRE-GYA------------------QAPRFLNQEHDTQYG 116 (202)
Q Consensus 62 ~~~~~~~~~w~~~g~~~~-----p~~~-~~~~~~~~ie~~~~~-~~~------------------~~P~fi~~~~~~~~v 116 (202)
.|.+.+.+.|+|+|.... .+.+ +++ .....++.|.| |.+ .++.|...+..+ .+
T Consensus 56 ~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i-~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~-~~ 133 (326)
T PHA02785 56 SGYNILDILWEKRGADNDRIIPIDNGSNMLI-LNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQ-IV 133 (326)
T ss_pred cCCCCceEEEEECCCccceEEEccCCceEEE-cccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccc-ee
Confidence 577778899999985411 1222 333 34444666644 211 111121112233 56
Q ss_pred ecCCeEEEEEE-----EEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEE
Q psy5280 117 IKNENSSLFWF-----VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189 (202)
Q Consensus 117 ~~G~~v~L~C~-----v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 189 (202)
.+|..+.|.|. ..+.|.|.|+|+++.. + ...++.. ...+.|.|.++..+|+|.|+|.|.|..|....
T Consensus 134 ~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~----~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~ 205 (326)
T PHA02785 134 NERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQ----RTPGIITIEDVRKNDAGYYTCVLKYIYGDKTY 205 (326)
T ss_pred cccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEe----cCCCeEEEeecChhhCeEEEEEEEeccCCEEE
Confidence 78999999997 3567999999998753 2 3345444 33468999999999999999999999987643
No 110
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.04 E-value=1e-09 Score=76.73 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=55.9
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCCEEcc--------------cCCcEEEEEe--eCCeEEEEEccCCCCCCEEEEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDELIE--------------MGGRYDSSYT--RNGQATLFINKMLDRDVGMYEA 178 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~--------------~~~r~~i~~~--~~~~~~L~I~~~~~~D~G~Y~C 178 (202)
.+.+|++|.|.|.+++.+.+.+.|+++++... ..+++.+... ..+...|.|.++..+|+|.|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 67789999999999999999999997763321 1223333111 2234679999999999999999
Q ss_pred EEEeCCceEE
Q psy5280 179 LASNEHGTAR 188 (202)
Q Consensus 179 ~a~N~~G~~~ 188 (202)
.+.|..+..+
T Consensus 83 ~v~~~~~~~~ 92 (94)
T cd07690 83 EVEDKKEEVE 92 (94)
T ss_pred EECCccceEE
Confidence 9999887654
No 111
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.98 E-value=1.1e-08 Score=71.59 Aligned_cols=68 Identities=9% Similarity=0.026 Sum_probs=55.3
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCCEEc--------ccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEe
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDELI--------EMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASN 182 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l--------~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 182 (202)
++.+|+++.|.|.+.+.....++|++.+..+ ....|+.+........+|.|.++..+|+|.|.|.+..
T Consensus 8 tv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 8 TVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred EEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 8899999999999999877778888766433 2456787754345567899999999999999999875
No 112
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.98 E-value=1.1e-09 Score=70.38 Aligned_cols=62 Identities=21% Similarity=0.286 Sum_probs=46.1
Q ss_pred CCeEEEEEEE-EeecCCceEEEeCCEEcccCCcEEEEEeeCCeE-EEEEccCCCCCCEEEEEEE
Q psy5280 119 NENSSLFWFV-YGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA-TLFINKMLDRDVGMYEALA 180 (202)
Q Consensus 119 G~~v~L~C~v-~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~-~L~I~~~~~~D~G~Y~C~a 180 (202)
|+++.|.|.+ .+.+.+.++|++++..+................ .|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 777788999999987665544333211111111 3999999999999999986
No 113
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.96 E-value=3.1e-09 Score=74.36 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=53.9
Q ss_pred EEecCCeEEEEEE-EEe----ecCCceEEEeCCEEcccCC-cEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceE
Q psy5280 115 YGIKNENSSLFWF-VYG----YPKPKVSFYFNDELIEMGG-RYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187 (202)
Q Consensus 115 ~v~~G~~v~L~C~-v~G----~P~P~i~W~k~g~~l~~~~-r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 187 (202)
.+..|.+..|.|. ..+ .+.|.++|+||+.++.... ++.. . .+...|.|.++..+|+|.|+|.|.|..|..
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~-~--~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYS-L--KGSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEe-c--CCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 5677899999996 233 3677999999999987543 2222 1 224579999999999999999999998654
No 114
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.96 E-value=3.8e-09 Score=74.71 Aligned_cols=76 Identities=13% Similarity=0.117 Sum_probs=57.7
Q ss_pred EEecCCeEEEEEEE------Eeec-----CCceEEEeCCEEcccCC-------cEEEEEeeCCeEEEEEccCCCCCCEEE
Q psy5280 115 YGIKNENSSLFWFV------YGYP-----KPKVSFYFNDELIEMGG-------RYDSSYTRNGQATLFINKMLDRDVGMY 176 (202)
Q Consensus 115 ~v~~G~~v~L~C~v------~G~P-----~P~i~W~k~g~~l~~~~-------r~~i~~~~~~~~~L~I~~~~~~D~G~Y 176 (202)
.+.+|+.+.|.|.. .+++ ...+.|+|++..+.... |+.. ....|.|..+..+|+|.|
T Consensus 11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~-----~~~~Lwf~Pa~~eDSG~Y 85 (104)
T cd05896 11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK-----EEDSIWFRPAELQDSGLY 85 (104)
T ss_pred EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE-----eCCEEEEEeCChhhCeEE
Confidence 77899999999986 1111 23799999975554422 3333 356899999999999999
Q ss_pred EEEEEeCCceEEEEEEEEe
Q psy5280 177 EALASNEHGTARQRVSSGN 195 (202)
Q Consensus 177 ~C~a~N~~G~~~~~~~L~V 195 (202)
+|++.|.......+..|+|
T Consensus 86 ~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 86 TCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEEECCCCcceEEEEEEEC
Confidence 9999999887777777665
No 115
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.90 E-value=1.3e-08 Score=68.88 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=49.8
Q ss_pred EEEEEEEEe-ecCCceEEEeCCEEcccCCcEEEEEeeCC-----eEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy5280 122 SSLFWFVYG-YPKPKVSFYFNDELIEMGGRYDSSYTRNG-----QATLFINKMLDRDVGMYEALASNEHGTARQRVSSG 194 (202)
Q Consensus 122 v~L~C~v~G-~P~P~i~W~k~g~~l~~~~r~~i~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~ 194 (202)
+.|.|.+.| .|.|.|+|+++|+.+..... .......+ .+.|.|......|.|.|+|.|.|........+.++
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATY-SKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCcee-eeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence 689999987 69999999999998864321 11111111 24677777777788999999999876544444443
No 116
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.87 E-value=1.1e-08 Score=82.70 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=62.1
Q ss_pred EEecCCeEEEEEEEEeecC-----------CceEEEeCCEEc--c-cCCc---EEEEEe--eCCeEEEEEccCCCCCCEE
Q psy5280 115 YGIKNENSSLFWFVYGYPK-----------PKVSFYFNDELI--E-MGGR---YDSSYT--RNGQATLFINKMLDRDVGM 175 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~-----------P~i~W~k~g~~l--~-~~~r---~~i~~~--~~~~~~L~I~~~~~~D~G~ 175 (202)
.+.+|+++.|.|.+.+.|. +.|.|+|++... . .+.+ ..+... ......|.|.++..+|+|.
T Consensus 33 ~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~ 112 (227)
T PHA02826 33 YAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGI 112 (227)
T ss_pred EecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCEE
Confidence 7889999999999988664 489999997542 1 1111 001001 1224689999999999999
Q ss_pred EEEEEEeCCceEEEEEEEEeec
Q psy5280 176 YEALASNEHGTARQRVSSGNPA 197 (202)
Q Consensus 176 Y~C~a~N~~G~~~~~~~L~V~~ 197 (202)
|+|.|.|..|....++.|.|..
T Consensus 113 Y~C~a~N~~~~~~~~i~L~V~~ 134 (227)
T PHA02826 113 YICTISSGNICEESTIRLTFDS 134 (227)
T ss_pred EEEEEEECCcceEEEEEEEEec
Confidence 9999999999988888888753
No 117
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.83 E-value=1.8e-08 Score=69.01 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=57.8
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSG 194 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~ 194 (202)
++..|.++.|.|...+. .+.+.|++++..+....++.. . ...|.|..+..+|+|.|.|.+. +.|-.+..+.+.
T Consensus 7 tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~----~-~~GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~ 79 (85)
T cd05872 7 TVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRV----G-TDGLLILVTSPEHSGTYRCYSE-EEGFQQLVASYS 79 (85)
T ss_pred EEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEE----e-CCCCEEEECCHhhCEEEEEEEe-cCCCeEEEEEEE
Confidence 88999999999998875 669999999999987667665 2 2337799999999999999987 456555444443
No 118
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.81 E-value=4.1e-08 Score=66.47 Aligned_cols=65 Identities=11% Similarity=-0.009 Sum_probs=48.2
Q ss_pred EEEEEEEE-eecCCceEEEeCCEEcccCCcEEEEEe--eCCeEEEEEccCCCCCCEEEEEEEEeCCceE
Q psy5280 122 SSLFWFVY-GYPKPKVSFYFNDELIEMGGRYDSSYT--RNGQATLFINKMLDRDVGMYEALASNEHGTA 187 (202)
Q Consensus 122 v~L~C~v~-G~P~P~i~W~k~g~~l~~~~r~~i~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 187 (202)
+.|.|... |.|.+.|+|+|+++.|........ .. -...++|.+.-....|.+.|+|.|.|.++..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~-~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQE-NGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCccccc-CCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 68999875 689999999999999964221000 00 0113578998888999999999999999864
No 119
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.76 E-value=1.1e-08 Score=66.94 Aligned_cols=73 Identities=23% Similarity=0.295 Sum_probs=47.7
Q ss_pred CeEEeccCCeeEEecCCeEEEEEEEEeec-CCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEe
Q psy5280 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYP-KPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASN 182 (202)
Q Consensus 104 P~fi~~~~~~~~v~~G~~v~L~C~v~G~P-~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 182 (202)
|.+....... +..+..+.|.|.+.+.| .+.++|+ +........ ..........|.|.++..+|.|.|+|+|.|
T Consensus 2 P~I~~~~~~~--~~~~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~~~---~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPV--VTSGGSVTLTCSAEGGPPPPSISWY-DSNPSFNSN---SRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSE--EETTEEEEEEEEESSEESSEEEEEE-TEEEEEEEE---EEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCCc--EeeceeEEEEEEEccccCCeEEEEE-ecCCceeee---eeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 4544444333 33444499999999998 7899999 111111110 001112357899999999999999999998
No 120
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.76 E-value=7.4e-08 Score=68.35 Aligned_cols=80 Identities=18% Similarity=0.097 Sum_probs=58.1
Q ss_pred cCCeEEEEEEEEeec------CCceEEEeCCE------E-c-cc----------CCcEEEEEeeCCeEEEEEccCCCCCC
Q psy5280 118 KNENSSLFWFVYGYP------KPKVSFYFNDE------L-I-EM----------GGRYDSSYTRNGQATLFINKMLDRDV 173 (202)
Q Consensus 118 ~G~~v~L~C~v~G~P------~P~i~W~k~g~------~-l-~~----------~~r~~i~~~~~~~~~L~I~~~~~~D~ 173 (202)
.|++|.|.|.....| ...|.|+|... . + .. ..|+.+........+|.|.++..+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999988764 34699998631 0 1 10 13444321112346899999999999
Q ss_pred EEEEEEEEeCCceEEEEEEEEeec
Q psy5280 174 GMYEALASNEHGTARQRVSSGNPA 197 (202)
Q Consensus 174 G~Y~C~a~N~~G~~~~~~~L~V~~ 197 (202)
|.|.|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999999998888888864
No 121
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.71 E-value=1e-07 Score=67.77 Aligned_cols=71 Identities=18% Similarity=0.127 Sum_probs=54.2
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCCEE------c--------ccCCcEEEEEe-eCCeEEEEEccCCCCCCEEEEEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDEL------I--------EMGGRYDSSYT-RNGQATLFINKMLDRDVGMYEAL 179 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~------l--------~~~~r~~i~~~-~~~~~~L~I~~~~~~D~G~Y~C~ 179 (202)
.+.+|++|.|.|.+.+.+.+.+.|++.... + ....|+.+... ......|.|.++..+|+|.|.|.
T Consensus 9 ~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~ 88 (109)
T cd04983 9 SVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCA 88 (109)
T ss_pred EEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEE
Confidence 888999999999999888889999985310 0 12345655322 13467899999999999999999
Q ss_pred EEeCCc
Q psy5280 180 ASNEHG 185 (202)
Q Consensus 180 a~N~~G 185 (202)
+.+..+
T Consensus 89 ~~~~~~ 94 (109)
T cd04983 89 LSESGG 94 (109)
T ss_pred EecCCC
Confidence 997654
No 122
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.70 E-value=1.9e-07 Score=66.23 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=57.6
Q ss_pred cCCeEEEEEEEEeec------CCceEEEeCC-----E-Ecc--cCCc------E--EEEE--eeCCeEEEEEccCCCCCC
Q psy5280 118 KNENSSLFWFVYGYP------KPKVSFYFND-----E-LIE--MGGR------Y--DSSY--TRNGQATLFINKMLDRDV 173 (202)
Q Consensus 118 ~G~~v~L~C~v~G~P------~P~i~W~k~g-----~-~l~--~~~r------~--~i~~--~~~~~~~L~I~~~~~~D~ 173 (202)
.|++|.|.|.....+ .+.|.|+|.. . .+. .... + .+.. ......+|.|.++..+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 389999999988764 4689999862 1 110 1111 1 1111 122457899999999999
Q ss_pred EEEEEEEEeCCceEEEEEEEEeec
Q psy5280 174 GMYEALASNEHGTARQRVSSGNPA 197 (202)
Q Consensus 174 G~Y~C~a~N~~G~~~~~~~L~V~~ 197 (202)
|.|.|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999988888889988875
No 123
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.68 E-value=1.1e-07 Score=68.07 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=52.3
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCCE--Ecc----------------cCCcEEEEEeeCCeEEEEEccCCCCCCEEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDE--LIE----------------MGGRYDSSYTRNGQATLFINKMLDRDVGMY 176 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g~--~l~----------------~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y 176 (202)
.+.+|+++.|.|.+.+ +.+.+.|+|... .+. ...++.+.........|.|.++..+|+|.|
T Consensus 9 ~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y 87 (110)
T cd05899 9 IKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVY 87 (110)
T ss_pred EEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEE
Confidence 8899999999999988 778899998532 110 124555432222457899999999999999
Q ss_pred EEEEEeCCc
Q psy5280 177 EALASNEHG 185 (202)
Q Consensus 177 ~C~a~N~~G 185 (202)
.|.+.+..|
T Consensus 88 ~Ca~~~~~~ 96 (110)
T cd05899 88 LCASSLGGG 96 (110)
T ss_pred EEEeeCCCC
Confidence 999987543
No 124
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.67 E-value=2.8e-07 Score=64.61 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=52.8
Q ss_pred CCeEEEEEEEEeecC---CceEEEeCCE--Ec---------cc------CCcEEEEEe--eCCeEEEEEccCCCCCCEEE
Q psy5280 119 NENSSLFWFVYGYPK---PKVSFYFNDE--LI---------EM------GGRYDSSYT--RNGQATLFINKMLDRDVGMY 176 (202)
Q Consensus 119 G~~v~L~C~v~G~P~---P~i~W~k~g~--~l---------~~------~~r~~i~~~--~~~~~~L~I~~~~~~D~G~Y 176 (202)
|++|.|.|....... ..+.|+|... .+ .. ..|+.+... ..+..+|.|.++..+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 688999999863322 2578887541 11 10 124433111 12346899999999999999
Q ss_pred EEEEEeCCceEEEEEEEEe
Q psy5280 177 EALASNEHGTARQRVSSGN 195 (202)
Q Consensus 177 ~C~a~N~~G~~~~~~~L~V 195 (202)
.|.+.|..+.....+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998888888888876
No 125
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.63 E-value=2.2e-07 Score=66.28 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=54.2
Q ss_pred EEecCCeEEEEEEEEeecCC--ceEEEeCCE-----Ecc--------------cCCcEEEEEeeCCeEEEEEccCCCCCC
Q psy5280 115 YGIKNENSSLFWFVYGYPKP--KVSFYFNDE-----LIE--------------MGGRYDSSYTRNGQATLFINKMLDRDV 173 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P--~i~W~k~g~-----~l~--------------~~~r~~i~~~~~~~~~L~I~~~~~~D~ 173 (202)
.+.+|+++.|.|.. .|.. .+.|+|+.. .+. -+.|..+ ..+++|.|.++..+|+
T Consensus 9 ~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~----~~ngSL~I~~v~~~D~ 82 (105)
T cd05774 9 QVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETI----YPNGSLLIQNVTQKDT 82 (105)
T ss_pred cccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEE----eCCCcEEEecCCcccC
Confidence 56789999999854 4555 789999621 110 1234444 3457899999999999
Q ss_pred EEEEEEEEeCC-ceEEEEEEEEe
Q psy5280 174 GMYEALASNEH-GTARQRVSSGN 195 (202)
Q Consensus 174 G~Y~C~a~N~~-G~~~~~~~L~V 195 (202)
|.|+|.+.|.. ....+.+.|.|
T Consensus 83 G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 83 GFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEEEEEEeCCccEEEEEEEEEC
Confidence 99999999988 45566666654
No 126
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.62 E-value=1.9e-07 Score=65.65 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=53.1
Q ss_pred EEecCCeEEEEEEEEee-cCCceEEEeCCE-----Ec------------ccCCcEEEEEeeC-CeEEEEEccCCCCCCEE
Q psy5280 115 YGIKNENSSLFWFVYGY-PKPKVSFYFNDE-----LI------------EMGGRYDSSYTRN-GQATLFINKMLDRDVGM 175 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~-P~P~i~W~k~g~-----~l------------~~~~r~~i~~~~~-~~~~L~I~~~~~~D~G~ 175 (202)
.+.+|+++.|.|.+.+. +...+.|+|... .+ ....|+.+..... ....|.|.++..+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 57789999999999987 677899998532 11 1124555433221 45789999999999999
Q ss_pred EEEEEEeCCc
Q psy5280 176 YEALASNEHG 185 (202)
Q Consensus 176 Y~C~a~N~~G 185 (202)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999998775
No 127
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.62 E-value=3.4e-07 Score=63.73 Aligned_cols=77 Identities=17% Similarity=0.040 Sum_probs=53.3
Q ss_pred CeEEEEEEEEeec---CCceEEEeCCEE----c-----------cc--CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEE
Q psy5280 120 ENSSLFWFVYGYP---KPKVSFYFNDEL----I-----------EM--GGRYDSSYTRNGQATLFINKMLDRDVGMYEAL 179 (202)
Q Consensus 120 ~~v~L~C~v~G~P---~P~i~W~k~g~~----l-----------~~--~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~ 179 (202)
++|.|.|...+.+ ...|.|+|.... + .. ..|..+.........|.|.++..+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4789999988764 347999996421 1 01 12222211111357899999999999999999
Q ss_pred EEe-CCceEEEEEEEEee
Q psy5280 180 ASN-EHGTARQRVSSGNP 196 (202)
Q Consensus 180 a~N-~~G~~~~~~~L~V~ 196 (202)
+.+ ..|.......|.|.
T Consensus 81 v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 81 FATFPQGNRQKVTTLTVL 98 (98)
T ss_pred EEeCCCCcEEEEEEEEeC
Confidence 875 67888888888773
No 128
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.56 E-value=5.5e-07 Score=64.87 Aligned_cols=68 Identities=12% Similarity=0.202 Sum_probs=51.6
Q ss_pred EEecCCeEEEEEEEEe--ecCCceEEEeC--CEEc---c--------------cCCcEEEEEeeC-CeEEEEEccCCCCC
Q psy5280 115 YGIKNENSSLFWFVYG--YPKPKVSFYFN--DELI---E--------------MGGRYDSSYTRN-GQATLFINKMLDRD 172 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G--~P~P~i~W~k~--g~~l---~--------------~~~r~~i~~~~~-~~~~L~I~~~~~~D 172 (202)
.+.+|+++.|.|.+.+ .+.+.+.|+|. +..+ . ...++.+..... ....|.|.++..+|
T Consensus 9 ~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 88 (116)
T cd04982 9 TREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKED 88 (116)
T ss_pred EeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHH
Confidence 7788999999999988 67888999985 2111 0 134666543332 46789999999999
Q ss_pred CEEEEEEEEe
Q psy5280 173 VGMYEALASN 182 (202)
Q Consensus 173 ~G~Y~C~a~N 182 (202)
+|.|.|.+..
T Consensus 89 sg~Y~C~~~~ 98 (116)
T cd04982 89 SATYYCAYWE 98 (116)
T ss_pred CEEEEEEEec
Confidence 9999999875
No 129
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.56 E-value=5.8e-07 Score=64.82 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=57.7
Q ss_pred cCCeEEEEEEEEeec------------CCceEEEeCCE-----Ecc-c----------CCcEEEEEe--eCCeEEEEEcc
Q psy5280 118 KNENSSLFWFVYGYP------------KPKVSFYFNDE-----LIE-M----------GGRYDSSYT--RNGQATLFINK 167 (202)
Q Consensus 118 ~G~~v~L~C~v~G~P------------~P~i~W~k~g~-----~l~-~----------~~r~~i~~~--~~~~~~L~I~~ 167 (202)
.|++|.|.|...... .+.|.|+|... .+. . ..|+.+... ..+..+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 389999999987543 46899998521 111 0 124444221 22467899999
Q ss_pred CCCCCCEEEEEEEEeCCceEEEEEEEEeec
Q psy5280 168 MLDRDVGMYEALASNEHGTARQRVSSGNPA 197 (202)
Q Consensus 168 ~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 197 (202)
+..+|+|.|.|.+.+.....+..+.|.|..
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999998888888888887753
No 130
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.54 E-value=4.8e-07 Score=62.17 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=51.0
Q ss_pred CCeEEEEEEEEeecCCceEEEeCCEEccc------------------CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEE
Q psy5280 119 NENSSLFWFVYGYPKPKVSFYFNDELIEM------------------GGRYDSSYTRNGQATLFINKMLDRDVGMYEALA 180 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P~i~W~k~g~~l~~------------------~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a 180 (202)
|++|.|.|.+.......|.|++....... ..|+.+ ..++.|.|.++..+|+|.|.|..
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~----~~~~sL~I~~l~~~DsG~Y~c~v 76 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETI----YPNGSLLIQNLTKEDSGTYTLQI 76 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEE----cCCceEEEccCCchhcEEEEEEE
Confidence 78999999988766668999987532210 123333 33478999999999999999999
Q ss_pred EeCCceE-EEEEEE
Q psy5280 181 SNEHGTA-RQRVSS 193 (202)
Q Consensus 181 ~N~~G~~-~~~~~L 193 (202)
.+..|.. ...+.|
T Consensus 77 ~~~~~~~~~~~~~l 90 (92)
T cd05741 77 ISTNGVTENAKFFL 90 (92)
T ss_pred EcCCCcEEEEEEEE
Confidence 9887543 333444
No 131
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.50 E-value=4e-07 Score=63.03 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=49.2
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeC
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNE 183 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 183 (202)
.|..|++|+|.|... .+...+.|+|+|...... ... .......+.|..+..+|+|.|.|...|.
T Consensus 12 vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-~~~---~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 12 VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-KPP---EPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred ccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-ccC---CCceeEEEEccCCChhHCEEEEEEEECC
Confidence 678999999999875 677788999998754321 100 1123567999999999999999999986
No 132
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.46 E-value=2.6e-06 Score=61.77 Aligned_cols=77 Identities=10% Similarity=0.086 Sum_probs=52.4
Q ss_pred EEecCCeEEEEEEEEee----cCCceEEE---------------eCCEEcc-c----CCcEEEEEe-eCCeEEEEEccCC
Q psy5280 115 YGIKNENSSLFWFVYGY----PKPKVSFY---------------FNDELIE-M----GGRYDSSYT-RNGQATLFINKML 169 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~----P~P~i~W~---------------k~g~~l~-~----~~r~~i~~~-~~~~~~L~I~~~~ 169 (202)
.+..|+++.|.|..... +...|.|. ++|.... . .+|+..... ..+..+|.|.++.
T Consensus 9 ~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~ 88 (116)
T cd05879 9 YGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLD 88 (116)
T ss_pred EEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCC
Confidence 78899999999998764 33579993 3343332 1 124433111 1235689999999
Q ss_pred CCCCEEEEEEEEeCCceEEEEE
Q psy5280 170 DRDVGMYEALASNEHGTARQRV 191 (202)
Q Consensus 170 ~~D~G~Y~C~a~N~~G~~~~~~ 191 (202)
.+|.|.|+|.+.|.-+.....+
T Consensus 89 ~sD~G~Y~C~v~n~p~~~~~~~ 110 (116)
T cd05879 89 YTDNGTFTCDVKNPPDIVGKSS 110 (116)
T ss_pred cccCEEEEEEEEcCCCcCCcee
Confidence 9999999999999877443333
No 133
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.45 E-value=2.7e-06 Score=61.02 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=56.5
Q ss_pred CCeEEEEEEEEeecC----------CceEEEeCC--EEc--c--c----------CCcEEEEE--eeCCeEEEEEccCCC
Q psy5280 119 NENSSLFWFVYGYPK----------PKVSFYFND--ELI--E--M----------GGRYDSSY--TRNGQATLFINKMLD 170 (202)
Q Consensus 119 G~~v~L~C~v~G~P~----------P~i~W~k~g--~~l--~--~----------~~r~~i~~--~~~~~~~L~I~~~~~ 170 (202)
|++|.|.|.....+. ..|.|+|.. ..+ . . .+|+.+.. .......|.|.++..
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 889999999987552 458999852 111 0 0 12433311 112457899999999
Q ss_pred CCCEEEEEEEEeCCceEEEEEEEEeec
Q psy5280 171 RDVGMYEALASNEHGTARQRVSSGNPA 197 (202)
Q Consensus 171 ~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 197 (202)
+|+|.|.|.+..........+.|.|.+
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999999877888888888764
No 134
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.44 E-value=1.5e-06 Score=61.69 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=51.4
Q ss_pred cCCeeEEecCCeEEEEEEEEeec-CCceEEEeCC--E---Ecc---------cCCcEEEEEeeCCeEEEEEccCCCCCCE
Q psy5280 110 EHDTQYGIKNENSSLFWFVYGYP-KPKVSFYFND--E---LIE---------MGGRYDSSYTRNGQATLFINKMLDRDVG 174 (202)
Q Consensus 110 ~~~~~~v~~G~~v~L~C~v~G~P-~P~i~W~k~g--~---~l~---------~~~r~~i~~~~~~~~~L~I~~~~~~D~G 174 (202)
+... .+.+|++|.|.|.+.+.. ...+.|+|.. + .|. ...++.+.. ......|.|.++..+|+|
T Consensus 7 p~~~-~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~~~~~Dsg 84 (106)
T cd04980 7 PATL-SVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG-SGTDFTLTISRVEPEDAA 84 (106)
T ss_pred CCcE-EECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec-cCCEEEEEECCCChHHCE
Confidence 3344 888999999999998765 5679999742 1 111 113455422 234567999999999999
Q ss_pred EEEEEEEeC
Q psy5280 175 MYEALASNE 183 (202)
Q Consensus 175 ~Y~C~a~N~ 183 (202)
.|.|.+.+.
T Consensus 85 ~Y~Ca~~~~ 93 (106)
T cd04980 85 VYYCQQYGT 93 (106)
T ss_pred EEEEEEeCC
Confidence 999998764
No 135
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.34 E-value=4.1e-06 Score=58.95 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=52.2
Q ss_pred eEEEEEEEEeec---CCceEEEeCCE-----Ecc---c----------CCcEEEEEe-eCCeEEEEEccCCCCCCEEEEE
Q psy5280 121 NSSLFWFVYGYP---KPKVSFYFNDE-----LIE---M----------GGRYDSSYT-RNGQATLFINKMLDRDVGMYEA 178 (202)
Q Consensus 121 ~v~L~C~v~G~P---~P~i~W~k~g~-----~l~---~----------~~r~~i~~~-~~~~~~L~I~~~~~~D~G~Y~C 178 (202)
+|.|.|.....+ ...|.|+|... .+. . .+|..+... ......|.|.++..+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999987544 33789998421 110 0 123333211 2235689999999999999999
Q ss_pred EEEe-CCceEEEEEEEEee
Q psy5280 179 LASN-EHGTARQRVSSGNP 196 (202)
Q Consensus 179 ~a~N-~~G~~~~~~~L~V~ 196 (202)
.+.+ ..|+.++.+.|.|.
T Consensus 82 ~v~~~p~g~~~~~~~L~V~ 100 (100)
T cd05888 82 RVITFPAGNFEAELVLTVW 100 (100)
T ss_pred EEEeCCCCCeeeEEEEEeC
Confidence 9998 77877888888874
No 136
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.34 E-value=5.6e-06 Score=56.10 Aligned_cols=65 Identities=9% Similarity=0.028 Sum_probs=42.2
Q ss_pred EEEEEEEEee-cCCceEEEeCCEEcccCCcEEEEEeeCC----eEEEEEccCCCCCCEEEEEEEEeCCceE
Q psy5280 122 SSLFWFVYGY-PKPKVSFYFNDELIEMGGRYDSSYTRNG----QATLFINKMLDRDVGMYEALASNEHGTA 187 (202)
Q Consensus 122 v~L~C~v~G~-P~P~i~W~k~g~~l~~~~r~~i~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 187 (202)
+.|.|.+.|. |.+.|+|++++..+.... ........+ ...|.+......+.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 6899999775 999999999999886432 111111111 1234444444455679999999988653
No 137
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.33 E-value=2.3e-06 Score=59.07 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=48.3
Q ss_pred ecCCeEEEEEEEEee-cC-CceEEEeCCEEcccCCc-EEEEEeeCC----eEEEEEccCCCCCCEEEEEEEEeCCce
Q psy5280 117 IKNENSSLFWFVYGY-PK-PKVSFYFNDELIEMGGR-YDSSYTRNG----QATLFINKMLDRDVGMYEALASNEHGT 186 (202)
Q Consensus 117 ~~G~~v~L~C~v~G~-P~-P~i~W~k~g~~l~~~~r-~~i~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 186 (202)
..|+.+.|.|.+.|. |. ..|+|+++|..+..... ........+ .+.|.+......|.|.|+|.+.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 358899999999998 53 57999999998865432 111111111 134555555556899999999997664
No 138
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.30 E-value=9.8e-06 Score=57.11 Aligned_cols=76 Identities=12% Similarity=0.087 Sum_probs=51.9
Q ss_pred eEEEEEEEEee-cCC---ceEEEeCC----EEcc--c-----------CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEE
Q psy5280 121 NSSLFWFVYGY-PKP---KVSFYFND----ELIE--M-----------GGRYDSSYTRNGQATLFINKMLDRDVGMYEAL 179 (202)
Q Consensus 121 ~v~L~C~v~G~-P~P---~i~W~k~g----~~l~--~-----------~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~ 179 (202)
+|.|.|..... |.. +|+|.+.. ..+. . .+|...........+|.|.++..+|+|.|.|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 58899998742 222 58998742 1110 0 12333311112347899999999999999999
Q ss_pred EEe-CCceEEEEEEEEee
Q psy5280 180 ASN-EHGTARQRVSSGNP 196 (202)
Q Consensus 180 a~N-~~G~~~~~~~L~V~ 196 (202)
..| ..|+.+..+.|+|.
T Consensus 82 v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 82 FATFPTGNRESQLNLTVY 99 (99)
T ss_pred EEeCCCCCeEEEEEEEEC
Confidence 999 78888888888873
No 139
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.29 E-value=6.1e-06 Score=59.56 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=49.3
Q ss_pred cCCeeEEecCCeEEEEEEEEeec----CCceEEEeCCE------Ecc----------cC----CcEEEEEe-eCCeEEEE
Q psy5280 110 EHDTQYGIKNENSSLFWFVYGYP----KPKVSFYFNDE------LIE----------MG----GRYDSSYT-RNGQATLF 164 (202)
Q Consensus 110 ~~~~~~v~~G~~v~L~C~v~G~P----~P~i~W~k~g~------~l~----------~~----~r~~i~~~-~~~~~~L~ 164 (202)
+... .+.+|+++.|.|...... ...|.|++... .+. .. .|+.+... .....+|.
T Consensus 5 p~~v-~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 5 PREV-YAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred CCeE-EEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 3344 788999999999987543 24589986321 110 11 12222110 11246799
Q ss_pred EccCCCCCCEEEEEEEEeCCce
Q psy5280 165 INKMLDRDVGMYEALASNEHGT 186 (202)
Q Consensus 165 I~~~~~~D~G~Y~C~a~N~~G~ 186 (202)
|.++..+|+|.|.|.+.|.-..
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCCC
Confidence 9999999999999999987654
No 140
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.29 E-value=3.3e-06 Score=59.02 Aligned_cols=68 Identities=15% Similarity=0.075 Sum_probs=49.7
Q ss_pred EEecCCeEEEEEEEEee--cCCceEEEeCCE--Ec---c---------cCCcEEEEEeeCCeEEEEEccCCCCCCEEEEE
Q psy5280 115 YGIKNENSSLFWFVYGY--PKPKVSFYFNDE--LI---E---------MGGRYDSSYTRNGQATLFINKMLDRDVGMYEA 178 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~--P~P~i~W~k~g~--~l---~---------~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C 178 (202)
.+.+|++|.|.|.+.+. ....+.|++... .+ . ...++.+... .....|.|.++..+|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~-~~~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKS-GNTASLTISGAQTEDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEcc-CCEEEEEECCCChhhCEEEEE
Confidence 56789999999998875 566799997421 11 1 1235665332 346789999999999999999
Q ss_pred EEEeC
Q psy5280 179 LASNE 183 (202)
Q Consensus 179 ~a~N~ 183 (202)
.+.+.
T Consensus 81 ~~~~~ 85 (98)
T cd04984 81 QVWDS 85 (98)
T ss_pred EEccC
Confidence 98764
No 141
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.29 E-value=3.7e-06 Score=58.90 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=53.0
Q ss_pred ecCCeEEEEEEEEe-ecCCceEEEeCCEEccc-------------C----CcEEEEEeeCCeEEEEEccCCCCCCEEEEE
Q psy5280 117 IKNENSSLFWFVYG-YPKPKVSFYFNDELIEM-------------G----GRYDSSYTRNGQATLFINKMLDRDVGMYEA 178 (202)
Q Consensus 117 ~~G~~v~L~C~v~G-~P~P~i~W~k~g~~l~~-------------~----~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C 178 (202)
..|++|.|.|.... ...-.+.|+|....+.. . .|+.+ .....+|.|.++..+|+|.|.|
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~---~~~~~sL~I~~~~~~DsG~Y~c 78 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF---SQNDYSLQISNLKMEDAGSYRA 78 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe---cCCceeEEECCCchHHCEEEEE
Confidence 46999999998754 44457899986432211 1 12222 2335889999999999999999
Q ss_pred EEEeCCceE-EEEEEEEe
Q psy5280 179 LASNEHGTA-RQRVSSGN 195 (202)
Q Consensus 179 ~a~N~~G~~-~~~~~L~V 195 (202)
...+..|.. ...+.|.|
T Consensus 79 ~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 79 EINTKNGVTITKEFTLHI 96 (97)
T ss_pred EEEcCCCCeEEEEEEEEe
Confidence 999888754 45556655
No 142
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.28 E-value=5.8e-06 Score=57.75 Aligned_cols=77 Identities=13% Similarity=0.024 Sum_probs=52.4
Q ss_pred CCeEEEEEEEEeecCC-ceEEEeCCE----Ecc-----c--------CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEE
Q psy5280 119 NENSSLFWFVYGYPKP-KVSFYFNDE----LIE-----M--------GGRYDSSYTRNGQATLFINKMLDRDVGMYEALA 180 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P-~i~W~k~g~----~l~-----~--------~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a 180 (202)
|++|.|.|........ .|.|+|... .+. . ..|+.+........+|.|.++..+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 7899999986644332 589998531 110 0 122222112234568999999999999999996
Q ss_pred E-eCCceEEEEEEEEe
Q psy5280 181 S-NEHGTARQRVSSGN 195 (202)
Q Consensus 181 ~-N~~G~~~~~~~L~V 195 (202)
. ...|..+..+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 5 67788888888877
No 143
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.27 E-value=9.8e-06 Score=58.56 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=48.0
Q ss_pred EEecCCeEEEEEEEEeec----CCceEEEeC----CE--Ecc---------cC----CcEEEEEe-eCCeEEEEEccCCC
Q psy5280 115 YGIKNENSSLFWFVYGYP----KPKVSFYFN----DE--LIE---------MG----GRYDSSYT-RNGQATLFINKMLD 170 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P----~P~i~W~k~----g~--~l~---------~~----~r~~i~~~-~~~~~~L~I~~~~~ 170 (202)
.+.+|+++.|.|.....+ ...|.|++. +. .+. .. .|+.+... ......|.|.++..
T Consensus 9 ~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~ 88 (115)
T cd05880 9 EAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQP 88 (115)
T ss_pred EEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCCh
Confidence 889999999999987543 235999741 11 110 11 12221100 12346799999999
Q ss_pred CCCEEEEEEEEeCCce
Q psy5280 171 RDVGMYEALASNEHGT 186 (202)
Q Consensus 171 ~D~G~Y~C~a~N~~G~ 186 (202)
+|+|.|.|.+.|..+.
T Consensus 89 ~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 89 TDNGTYTCQVKNPPDV 104 (115)
T ss_pred hhCEEEEEEEEeCCCC
Confidence 9999999999987764
No 144
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.26 E-value=2e-05 Score=55.48 Aligned_cols=83 Identities=18% Similarity=0.144 Sum_probs=56.4
Q ss_pred eeEEecCCeEEEEEEEE-eecCCceEEEeCCE-----Ecc--------------cCCcEEEEEe-eCCeEEEEEccCCCC
Q psy5280 113 TQYGIKNENSSLFWFVY-GYPKPKVSFYFNDE-----LIE--------------MGGRYDSSYT-RNGQATLFINKMLDR 171 (202)
Q Consensus 113 ~~~v~~G~~v~L~C~v~-G~P~P~i~W~k~g~-----~l~--------------~~~r~~i~~~-~~~~~~L~I~~~~~~ 171 (202)
...+.+|+++.|.|... ......+.|++... .+. ...++.+... .....+|.|.++...
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~ 89 (114)
T PF07686_consen 10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS 89 (114)
T ss_dssp EEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG
T ss_pred eEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC
Confidence 34889999999999999 44556899998321 111 0123333221 123568999999999
Q ss_pred CCEEEEEEEEeC-CceEEEEEEEEe
Q psy5280 172 DVGMYEALASNE-HGTARQRVSSGN 195 (202)
Q Consensus 172 D~G~Y~C~a~N~-~G~~~~~~~L~V 195 (202)
|+|.|.|..... .........|.|
T Consensus 90 DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 90 DSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp GEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred cCEEEEEEEEECCCCEECCcEEEEC
Confidence 999999999987 334445555554
No 145
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.25 E-value=1.1e-05 Score=56.55 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=53.1
Q ss_pred CeEEEEEEEEeec-CCceEEEeCC----EEccc-------------CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEE-
Q psy5280 120 ENSSLFWFVYGYP-KPKVSFYFND----ELIEM-------------GGRYDSSYTRNGQATLFINKMLDRDVGMYEALA- 180 (202)
Q Consensus 120 ~~v~L~C~v~G~P-~P~i~W~k~g----~~l~~-------------~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a- 180 (202)
+++.|.|.....+ ..+|+|.|.. ..+.. .+|..+........+|.|.++..+|+|.|.|..
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 4689999986432 2378998842 12210 123333212233568999999999999999995
Q ss_pred EeCCceEEEEEEEEee
Q psy5280 181 SNEHGTARQRVSSGNP 196 (202)
Q Consensus 181 ~N~~G~~~~~~~L~V~ 196 (202)
....|+.++++.|.|.
T Consensus 81 tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 81 TFPLGNTQSSTTVTVL 96 (96)
T ss_pred eCCCCCeeEEEEEEEC
Confidence 7888999999998873
No 146
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.23 E-value=1e-05 Score=62.77 Aligned_cols=84 Identities=11% Similarity=0.080 Sum_probs=60.4
Q ss_pred EEecCCeEEEEEEEE-eecCCceEEEeCCEEcc----------c--CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEE
Q psy5280 115 YGIKNENSSLFWFVY-GYPKPKVSFYFNDELIE----------M--GGRYDSSYTRNGQATLFINKMLDRDVGMYEALAS 181 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~-G~P~P~i~W~k~g~~l~----------~--~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 181 (202)
.|.+|++|.|.|... +...+.|.|.|....+. + .+|+.+.........|.|.++..+|+|.|.|...
T Consensus 26 ~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~ 105 (189)
T PHA02987 26 TVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFN 105 (189)
T ss_pred EEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEE
Confidence 788999999999984 66778999999743221 1 1344421222345789999999999999999865
Q ss_pred -eCCc-eEEEEEEEEeecC
Q psy5280 182 -NEHG-TARQRVSSGNPAQ 198 (202)
Q Consensus 182 -N~~G-~~~~~~~L~V~~~ 198 (202)
-..| ..+..+-|.|.+.
T Consensus 106 tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 106 TLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred ecCCCCCceeEEEEEEEch
Confidence 4456 6777777887754
No 147
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.18 E-value=3.6e-05 Score=55.77 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=56.9
Q ss_pred CCeEEEEEEEEeecC-----------CceEEEeC-----CE-----Ec--cc----------CCcEEEEEee--CCeEEE
Q psy5280 119 NENSSLFWFVYGYPK-----------PKVSFYFN-----DE-----LI--EM----------GGRYDSSYTR--NGQATL 163 (202)
Q Consensus 119 G~~v~L~C~v~G~P~-----------P~i~W~k~-----g~-----~l--~~----------~~r~~i~~~~--~~~~~L 163 (202)
|+++.|.|...-.|. +.|.|++- +. .+ .. ..|..+.... .+..+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 678999999986552 37999874 11 11 01 1233432111 245789
Q ss_pred EEccCCCCCCEEEEEEEEeCCceEEEEEEEEeec
Q psy5280 164 FINKMLDRDVGMYEALASNEHGTARQRVSSGNPA 197 (202)
Q Consensus 164 ~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 197 (202)
.|.++..+|+|.|.|...+.....+..+.|.|.+
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999999999999999998864
No 148
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.18 E-value=2.5e-05 Score=56.16 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=49.8
Q ss_pred EEecCCeEEEEEEEEee-cCCceEEEeCC--EE---c---------ccCCcEEEEEe-eCCeEEEEEccCCCCCCEEEEE
Q psy5280 115 YGIKNENSSLFWFVYGY-PKPKVSFYFND--EL---I---------EMGGRYDSSYT-RNGQATLFINKMLDRDVGMYEA 178 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~-P~P~i~W~k~g--~~---l---------~~~~r~~i~~~-~~~~~~L~I~~~~~~D~G~Y~C 178 (202)
.+.+|++|.|.|...+. ....+.|+|.. .. + ...+|+.+... ......|.|.++..+|+|.|.|
T Consensus 10 ~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C 89 (116)
T cd07706 10 SVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFC 89 (116)
T ss_pred EEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEE
Confidence 78899999999998764 45579999842 11 1 11356666432 2345789999999999999999
Q ss_pred EEEe
Q psy5280 179 LASN 182 (202)
Q Consensus 179 ~a~N 182 (202)
.+..
T Consensus 90 ~~~~ 93 (116)
T cd07706 90 ALST 93 (116)
T ss_pred EEEC
Confidence 9985
No 149
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.18 E-value=2.4e-05 Score=53.18 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=43.5
Q ss_pred EEEEEEEEee-cCCceEEEeCCEEcccCCcEEEEEeeCC-----eEEEEEccCCCCCCEEEEEEEEeCCceE
Q psy5280 122 SSLFWFVYGY-PKPKVSFYFNDELIEMGGRYDSSYTRNG-----QATLFINKMLDRDVGMYEALASNEHGTA 187 (202)
Q Consensus 122 v~L~C~v~G~-P~P~i~W~k~g~~l~~~~r~~i~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 187 (202)
+.|.|.+.|. |.+.|+|+++|+.+..... .+.....+ ...|.+......+...|+|.|.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 6799999885 9999999999998865332 22111121 1234444444556679999999987543
No 150
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.17 E-value=1.1e-05 Score=54.75 Aligned_cols=75 Identities=8% Similarity=0.069 Sum_probs=47.9
Q ss_pred EEEEEEEEe-ecCCceEEEeCCEEcccCCcEEEEEee--CCeEEEEEccCCCCCCEEEEEEEEeCCce-EEEEEEEEee
Q psy5280 122 SSLFWFVYG-YPKPKVSFYFNDELIEMGGRYDSSYTR--NGQATLFINKMLDRDVGMYEALASNEHGT-ARQRVSSGNP 196 (202)
Q Consensus 122 v~L~C~v~G-~P~P~i~W~k~g~~l~~~~r~~i~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~ 196 (202)
+.|.|.+.| .|.+.|+|+|++..+............ ...++|.+.--...|...|+|.|.|.+-. .+.+..|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 679999876 588899999999998653221110000 01346777555555666999999997642 3445556554
No 151
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.14 E-value=1.7e-05 Score=49.50 Aligned_cols=65 Identities=29% Similarity=0.382 Sum_probs=46.9
Q ss_pred EEEEEEEEeecCCceEEEeCCEEcccCCcE---EEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCce
Q psy5280 122 SSLFWFVYGYPKPKVSFYFNDELIEMGGRY---DSSYTRNGQATLFINKMLDRDVGMYEALASNEHGT 186 (202)
Q Consensus 122 v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~---~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 186 (202)
+.|.|.+.+.+...+.|++++......... ...........|.|.++...|.|.|.|.+.+..+.
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 68 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT 68 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcCc
Confidence 468999999788899999998766543211 00001123567999999999999999999987643
No 152
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.14 E-value=3.2e-05 Score=55.51 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=55.6
Q ss_pred CCeEEEEEEEEeec-------CCceEEEeCC-----EEc----cc----------CCcEEEEEee--CCeEEEEEccCCC
Q psy5280 119 NENSSLFWFVYGYP-------KPKVSFYFND-----ELI----EM----------GGRYDSSYTR--NGQATLFINKMLD 170 (202)
Q Consensus 119 G~~v~L~C~v~G~P-------~P~i~W~k~g-----~~l----~~----------~~r~~i~~~~--~~~~~L~I~~~~~ 170 (202)
|+++.|.|...-.| .+.|.|.|.. ..+ .. ..|..+.... .+..+|.|.++..
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78899999976333 3689998751 111 00 2344442211 2357899999999
Q ss_pred CCCEEEEEEEEeCCceEEEEEEEEeec
Q psy5280 171 RDVGMYEALASNEHGTARQRVSSGNPA 197 (202)
Q Consensus 171 ~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 197 (202)
+|+|.|.|.........+..+.|.|.+
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999887788888888763
No 153
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.12 E-value=2.3e-05 Score=55.32 Aligned_cols=72 Identities=19% Similarity=0.161 Sum_probs=48.8
Q ss_pred EEecCCeEEEEEEEEe-ecCCc--eEEEeCCEEcccCCcEEE-EEeeCCeEEEEEccCCCCCCE-EEEEEEEeCCceE
Q psy5280 115 YGIKNENSSLFWFVYG-YPKPK--VSFYFNDELIEMGGRYDS-SYTRNGQATLFINKMLDRDVG-MYEALASNEHGTA 187 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G-~P~P~--i~W~k~g~~l~~~~r~~i-~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~G~~ 187 (202)
.+.+|+.+.|.|.+.| .|.+. |.|+|++..+........ ........+|.+. +.++|.| .|+|.|.+.++..
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~~ 88 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRPE 88 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCcc
Confidence 5679999999999987 67776 699999998865321100 0001123456554 4566666 8999999988754
No 154
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.11 E-value=1.9e-05 Score=55.05 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=50.1
Q ss_pred EEecCCeEEEEEEEEe-ecCCceEEEeCCE-----Ec--------ccCCcEEEEEe-eCCeEEEEEccCCCCCCEEEEEE
Q psy5280 115 YGIKNENSSLFWFVYG-YPKPKVSFYFNDE-----LI--------EMGGRYDSSYT-RNGQATLFINKMLDRDVGMYEAL 179 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G-~P~P~i~W~k~g~-----~l--------~~~~r~~i~~~-~~~~~~L~I~~~~~~D~G~Y~C~ 179 (202)
.+.+|++|.|.|.... .....+.|+|... .+ ....|+.+... ......|.|.++..+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 6789999999998765 3456789998642 11 11345555322 13456899999999999999998
Q ss_pred EEeCC
Q psy5280 180 ASNEH 184 (202)
Q Consensus 180 a~N~~ 184 (202)
+.+..
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 87754
No 155
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.09 E-value=3.9e-05 Score=52.51 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=55.0
Q ss_pred EEecCCeEEEEEEEEeecCC--ceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKP--KVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P--~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 192 (202)
.+..|+++.|.|.....+.| .|+|.-.+.... +. ...+..+|.+..+...|+|..+|.+....-.......
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-----~~--~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~ 82 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-----QI--LNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD 82 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-----ee--ccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence 67889999999998654555 999986543221 11 1134678999999999999999999876555566666
Q ss_pred EEeec
Q psy5280 193 SGNPA 197 (202)
Q Consensus 193 L~V~~ 197 (202)
+.|.+
T Consensus 83 V~Vl~ 87 (88)
T cd07694 83 IKVLA 87 (88)
T ss_pred EEEEe
Confidence 66653
No 156
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.00 E-value=4.3e-05 Score=52.00 Aligned_cols=65 Identities=15% Similarity=0.042 Sum_probs=42.0
Q ss_pred EEEEEEEEe-ecCCceEEEeCCEEcccCCcEEEEEeeCC----eEEEEEccCCCCCCEEEEEEEEeCCce
Q psy5280 122 SSLFWFVYG-YPKPKVSFYFNDELIEMGGRYDSSYTRNG----QATLFINKMLDRDVGMYEALASNEHGT 186 (202)
Q Consensus 122 v~L~C~v~G-~P~P~i~W~k~g~~l~~~~r~~i~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 186 (202)
+.|.|.+.| +|...|+|+|+|..+.............+ ...|.+......+...|+|.+.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 679999987 68888999999998764322211111111 234555544445566999999987654
No 157
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.96 E-value=4.4e-05 Score=54.28 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=46.7
Q ss_pred EEecCCeEEEEEEEEeec-CCceEEEeCCEE---------c--c-----------cCCcEEEEEee-CCeEEEEEccCCC
Q psy5280 115 YGIKNENSSLFWFVYGYP-KPKVSFYFNDEL---------I--E-----------MGGRYDSSYTR-NGQATLFINKMLD 170 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P-~P~i~W~k~g~~---------l--~-----------~~~r~~i~~~~-~~~~~L~I~~~~~ 170 (202)
.+..|++|.|.|.+.+.. ...+.|++.... + . ...++.+.... .....|.|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 567899999999987754 347999975321 0 0 02344432221 2245799999999
Q ss_pred CCCEEEEEEEEe
Q psy5280 171 RDVGMYEALASN 182 (202)
Q Consensus 171 ~D~G~Y~C~a~N 182 (202)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999864
No 158
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.95 E-value=9.7e-05 Score=53.53 Aligned_cols=73 Identities=11% Similarity=-0.020 Sum_probs=48.7
Q ss_pred cCCeeEEecCCeEEEEEEEEeec------CCceEEEeCCE-----E-c--cc---------CCcEEEEE-eeCCeEEEEE
Q psy5280 110 EHDTQYGIKNENSSLFWFVYGYP------KPKVSFYFNDE-----L-I--EM---------GGRYDSSY-TRNGQATLFI 165 (202)
Q Consensus 110 ~~~~~~v~~G~~v~L~C~v~G~P------~P~i~W~k~g~-----~-l--~~---------~~r~~i~~-~~~~~~~L~I 165 (202)
+... .+.+|++|.|.|...... .-.+.|+|... . + .. ..|+.+.. .......|.|
T Consensus 6 P~~v-~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 6 PKSV-SVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCEE-EEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 4444 888999999999875322 23489998632 1 1 00 13444421 1234578999
Q ss_pred ccCCCCCCEEEEEEEEeC
Q psy5280 166 NKMLDRDVGMYEALASNE 183 (202)
Q Consensus 166 ~~~~~~D~G~Y~C~a~N~ 183 (202)
.++..+|+|.|.|.....
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999988664
No 159
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.90 E-value=4.4e-05 Score=54.05 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=46.6
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCCE----E---cc---c------------CCcEEEEEeeCCeEEEEEccCCCCC
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDE----L---IE---M------------GGRYDSSYTRNGQATLFINKMLDRD 172 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g~----~---l~---~------------~~r~~i~~~~~~~~~L~I~~~~~~D 172 (202)
.+.+|++|.|.|.+.+.-...+.|++... . |. . ..++.+.. ......|.|.++..+|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~-~~~~~~L~I~~~~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSR-SSNSFVLTLKNFQKEN 80 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEe-cCCEEEEEECCCCHHH
Confidence 45689999999998765556799998531 1 11 0 12343322 2345689999999999
Q ss_pred CEEEEEEEEe
Q psy5280 173 VGMYEALASN 182 (202)
Q Consensus 173 ~G~Y~C~a~N 182 (202)
+|+|.|.+.+
T Consensus 81 sgtY~Ca~~~ 90 (104)
T cd05720 81 EGYYFCSVAS 90 (104)
T ss_pred CEEEEEEEcc
Confidence 9999998764
No 160
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.87 E-value=0.00022 Score=52.97 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=47.4
Q ss_pred CCeEEeccCCeeEEecCCeEEEEEEEEee-cC-CceEEEeCCEEccc-----CCcE--EEEEeeCC----eEEEEEccCC
Q psy5280 103 APRFLNQEHDTQYGIKNENSSLFWFVYGY-PK-PKVSFYFNDELIEM-----GGRY--DSSYTRNG----QATLFINKML 169 (202)
Q Consensus 103 ~P~fi~~~~~~~~v~~G~~v~L~C~v~G~-P~-P~i~W~k~g~~l~~-----~~r~--~i~~~~~~----~~~L~I~~~~ 169 (202)
+|.+...+... ...+|+.+.|.|.+.|. |. +.|+|++++..... .... .......+ .+.|.+....
T Consensus 38 ~P~v~~~~~~~-~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~ 116 (139)
T cd05771 38 PPRVRLSLEKL-VSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGT 116 (139)
T ss_pred CCceEEeCCCc-eeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCc
Confidence 56554334333 44478999999999996 54 37999999854211 1100 00001111 2456665444
Q ss_pred CCCCEEEEEEEEeCCc
Q psy5280 170 DRDVGMYEALASNEHG 185 (202)
Q Consensus 170 ~~D~G~Y~C~a~N~~G 185 (202)
..+.+.|+|.+.+..-
T Consensus 117 ~~~g~~ytC~V~H~~l 132 (139)
T cd05771 117 EDAGATYTCRVSHVSL 132 (139)
T ss_pred cCCCCEEEEEEEcCCC
Confidence 4456699999987643
No 161
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.84 E-value=7.3e-05 Score=51.99 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=44.4
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALAS 181 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 181 (202)
.+..|++|+|.|...- +.-.+.|+|+|........... ........+.|..+..+|+|.|.|...
T Consensus 11 vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~-~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 11 VVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEK-HHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred ccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccc-cCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 6779999999997654 4446899999865321100000 001123578999999999999999975
No 162
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.74 E-value=0.0002 Score=51.87 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=49.1
Q ss_pred cCCeeEEecCCeEEEEEEEEeec--CCceEEEeCC--EE---c---c-----------cCCcEEEEEeeC-CeEEEEEcc
Q psy5280 110 EHDTQYGIKNENSSLFWFVYGYP--KPKVSFYFND--EL---I---E-----------MGGRYDSSYTRN-GQATLFINK 167 (202)
Q Consensus 110 ~~~~~~v~~G~~v~L~C~v~G~P--~P~i~W~k~g--~~---l---~-----------~~~r~~i~~~~~-~~~~L~I~~ 167 (202)
+... .+.+|++|.|.|...+.- ...+.|+|.. +. | . ..+|+.+..... ....|.|.+
T Consensus 4 ~~~~-~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 4 SGPG-LVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred CCCe-EEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 3344 788999999999876543 3568999742 11 1 0 024555533322 235799999
Q ss_pred CCCCCCEEEEEEEEe
Q psy5280 168 MLDRDVGMYEALASN 182 (202)
Q Consensus 168 ~~~~D~G~Y~C~a~N 182 (202)
+..+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998765
No 163
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.72 E-value=0.00034 Score=48.98 Aligned_cols=74 Identities=19% Similarity=0.144 Sum_probs=46.1
Q ss_pred CeEEEEEEEEee-cCCceEEEeCCE----Ecc-----------c--CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEE
Q psy5280 120 ENSSLFWFVYGY-PKPKVSFYFNDE----LIE-----------M--GGRYDSSYTRNGQATLFINKMLDRDVGMYEALAS 181 (202)
Q Consensus 120 ~~v~L~C~v~G~-P~P~i~W~k~g~----~l~-----------~--~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 181 (202)
+++.|.|..... ...+|+|.|... .+. . .+|+..........+|.|.++..+|+|.|+|...
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 468899987532 345688988421 111 0 1233331111234789999999999999999986
Q ss_pred e-CCceEEEEEEE
Q psy5280 182 N-EHGTARQRVSS 193 (202)
Q Consensus 182 N-~~G~~~~~~~L 193 (202)
. ..|+.++...+
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 5 46766655443
No 164
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.71 E-value=0.00056 Score=46.54 Aligned_cols=69 Identities=22% Similarity=0.300 Sum_probs=42.2
Q ss_pred CCeEEEEEEE-EeecCCceEEEeCCEEcccCCcEEEEEeeCC----eEEEEEccCCCCCCEEEEEEEEeCCceE
Q psy5280 119 NENSSLFWFV-YGYPKPKVSFYFNDELIEMGGRYDSSYTRNG----QATLFINKMLDRDVGMYEALASNEHGTA 187 (202)
Q Consensus 119 G~~v~L~C~v-~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 187 (202)
|+.+.|.|.+ .|+|.|.|+|+.++..+.............+ ...|.+..-...+...++|.|.+..-..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 6799999965 5789999999999877721111111001111 2346555443345568999999986543
No 165
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.69 E-value=0.00061 Score=45.15 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=38.8
Q ss_pred EEEEEEEEee-cC-CceEEEeCCEEcccCCcE-EEEEeeCC----eEEEEEccCCCCCCEEEEEEEEeCC
Q psy5280 122 SSLFWFVYGY-PK-PKVSFYFNDELIEMGGRY-DSSYTRNG----QATLFINKMLDRDVGMYEALASNEH 184 (202)
Q Consensus 122 v~L~C~v~G~-P~-P~i~W~k~g~~l~~~~r~-~i~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~ 184 (202)
+.|.|.+.|. |. ..|+|+|||+.+...... .......+ .+.|.|......+...|+|.+....
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6899999996 54 478999999875432110 01011111 2345555555566679999997654
No 166
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.60 E-value=0.00027 Score=46.65 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=40.2
Q ss_pred eEEEEEEEEeecCC--ceEEEeCCE-----Ecc-------------cCCcEEEEEee-CCeEEEEEccCCCCCCEEEEEE
Q psy5280 121 NSSLFWFVYGYPKP--KVSFYFNDE-----LIE-------------MGGRYDSSYTR-NGQATLFINKMLDRDVGMYEAL 179 (202)
Q Consensus 121 ~v~L~C~v~G~P~P--~i~W~k~g~-----~l~-------------~~~r~~i~~~~-~~~~~L~I~~~~~~D~G~Y~C~ 179 (202)
++.|.|.+.....+ .+.|++... .+. ...|+.+.... ....+|.|.++..+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899998876654 789987531 111 12355443222 3457899999999999999995
No 167
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.59 E-value=0.0011 Score=45.73 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=39.3
Q ss_pred CCeEEEEEEEEee-cCC-ceEEEeCCEEcccCCcE-EEEEeeCCeE-EEEEccCCCCCCEEEEEEEEeCCc
Q psy5280 119 NENSSLFWFVYGY-PKP-KVSFYFNDELIEMGGRY-DSSYTRNGQA-TLFINKMLDRDVGMYEALASNEHG 185 (202)
Q Consensus 119 G~~v~L~C~v~G~-P~P-~i~W~k~g~~l~~~~r~-~i~~~~~~~~-~L~I~~~~~~D~G~Y~C~a~N~~G 185 (202)
++.+.|.|.+.|. |.. .++|.+++..+...... .......+.. ......+...+...|+|.+.+..-
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 6789999999996 544 78999999644322111 1111111111 111222333477899999987654
No 168
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.45 E-value=0.00072 Score=47.79 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=40.2
Q ss_pred ecCCeEEEEEEEEeecCCc--eEEEeCCEEcccCCcEE--EEEee--CC----eEEEEEccCCCCCCEEEEEEEEeCCc
Q psy5280 117 IKNENSSLFWFVYGYPKPK--VSFYFNDELIEMGGRYD--SSYTR--NG----QATLFINKMLDRDVGMYEALASNEHG 185 (202)
Q Consensus 117 ~~G~~v~L~C~v~G~P~P~--i~W~k~g~~l~~~~r~~--i~~~~--~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G 185 (202)
..|+.+.|.|.+.|.-++. ++|.+||+.+....... ..... .+ ...|.+..-.-.+...|+|.+.-...
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 3478899999999965444 59999999875432111 10000 11 12344433222345579999887543
No 169
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.29 E-value=0.0016 Score=45.77 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=41.0
Q ss_pred ecCCeEEEEEEEEee-c-CCceEEEeCCEEcccCCcE-EEEEeeCCe----EEEEEccCCCCCCEEEEEEEEeCCc
Q psy5280 117 IKNENSSLFWFVYGY-P-KPKVSFYFNDELIEMGGRY-DSSYTRNGQ----ATLFINKMLDRDVGMYEALASNEHG 185 (202)
Q Consensus 117 ~~G~~v~L~C~v~G~-P-~P~i~W~k~g~~l~~~~r~-~i~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~~G 185 (202)
..++.+.|.|.+.|. | .-.|+|++||..+..+... ......++. ..|.+....-.+...|+|.+....-
T Consensus 15 ~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 15 EKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred ccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 356789999999995 5 2367999999988532110 011111111 2344433333345689999987653
No 170
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.29 E-value=0.0031 Score=43.88 Aligned_cols=71 Identities=13% Similarity=0.203 Sum_probs=41.3
Q ss_pred cCCeEEEEEEEEee-cC-CceEEEeCCEEcccCCc-EEEEEeeCC----eEEEEEccCCCCCCEEEEEEEEeCCceEE
Q psy5280 118 KNENSSLFWFVYGY-PK-PKVSFYFNDELIEMGGR-YDSSYTRNG----QATLFINKMLDRDVGMYEALASNEHGTAR 188 (202)
Q Consensus 118 ~G~~v~L~C~v~G~-P~-P~i~W~k~g~~l~~~~r-~~i~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 188 (202)
....+.|.|.+.|. |. -.|+|.+||..+..... ........+ ...|.+....-.+...|+|.+.....+..
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~ 90 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFE 90 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeee
Confidence 45668999999995 54 25799999988632210 001011111 12344443333355689999988765543
No 171
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.26 E-value=0.0035 Score=44.98 Aligned_cols=68 Identities=10% Similarity=0.121 Sum_probs=42.0
Q ss_pred EecCCeEEEEEEEEee-cC-CceEEEeCCEEcccCCcEEEEEeeCC-----eEEEEEccCCCCCCE-EEEEEEEeCCc
Q psy5280 116 GIKNENSSLFWFVYGY-PK-PKVSFYFNDELIEMGGRYDSSYTRNG-----QATLFINKMLDRDVG-MYEALASNEHG 185 (202)
Q Consensus 116 v~~G~~v~L~C~v~G~-P~-P~i~W~k~g~~l~~~~r~~i~~~~~~-----~~~L~I~~~~~~D~G-~Y~C~a~N~~G 185 (202)
...|+.+.|.|.+.|. |. -.++|+|||+.+..... .......+ .+.|.+.. ...|.| .|+|.+.....
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCC
Confidence 3468889999999985 54 37899999999864221 11111111 22344443 344444 59999998753
No 172
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.25 E-value=0.0023 Score=44.61 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=38.0
Q ss_pred CeEEEEEEE-EeecCCceEEEeCCEEcccCCcEEEEEeeCC----eEEEEEccCCCCCCEEEEEEEEeCCceE
Q psy5280 120 ENSSLFWFV-YGYPKPKVSFYFNDELIEMGGRYDSSYTRNG----QATLFINKMLDRDVGMYEALASNEHGTA 187 (202)
Q Consensus 120 ~~v~L~C~v-~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 187 (202)
....+.|.+ .|+|.+.|+|+++. .............+ .+.|.+.-....+.-.|+|.+.|..-..
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 456788988 68999999999971 11111111000111 2345554444444558999999987443
No 173
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.22 E-value=0.0023 Score=44.69 Aligned_cols=62 Identities=8% Similarity=-0.059 Sum_probs=38.1
Q ss_pred CeEEEEEEEE-eecCCceEEEeCCEEccc-------CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceE
Q psy5280 120 ENSSLFWFVY-GYPKPKVSFYFNDELIEM-------GGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187 (202)
Q Consensus 120 ~~v~L~C~v~-G~P~P~i~W~k~g~~l~~-------~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 187 (202)
....+.|.+. |.|.+.|+|+++...... ...+.+ .+.|.+.-....|...|+|.+.+..-..
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv------~S~l~~~P~~~d~Gk~ltC~v~h~al~~ 85 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTV------TSEYSLVPTPEANGKEVTCKVEHETLQE 85 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEE------EEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 4578899765 789999999998211110 011111 2345554444445568999999987443
No 174
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.14 E-value=0.0027 Score=44.33 Aligned_cols=69 Identities=9% Similarity=-0.055 Sum_probs=37.5
Q ss_pred EecCCeEEEEEEEEee-cCC--ceEEEeCCEEccc-CCcEEEEEeeCC----eEEEEEccCCCCCCEEEEEEEEeCCc
Q psy5280 116 GIKNENSSLFWFVYGY-PKP--KVSFYFNDELIEM-GGRYDSSYTRNG----QATLFINKMLDRDVGMYEALASNEHG 185 (202)
Q Consensus 116 v~~G~~v~L~C~v~G~-P~P--~i~W~k~g~~l~~-~~r~~i~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G 185 (202)
+..|+.+.|.|.+.|. -++ .|+|.||+..... ...... .+.++ ...|.+....-.+.-.|+|.+....-
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~-~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPE-SHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccc-cCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 3458899999999999 333 4699998743321 100000 00111 12333332222233479999987653
No 175
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.05 E-value=0.0055 Score=42.58 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=39.2
Q ss_pred cCCeEEEEEEEEeecCC--ceEEEeCCEEcccCCcE-EEEEeeCCeEE-EEEccCCCCCCEEEEEEEEeCC
Q psy5280 118 KNENSSLFWFVYGYPKP--KVSFYFNDELIEMGGRY-DSSYTRNGQAT-LFINKMLDRDVGMYEALASNEH 184 (202)
Q Consensus 118 ~G~~v~L~C~v~G~P~P--~i~W~k~g~~l~~~~r~-~i~~~~~~~~~-L~I~~~~~~D~G~Y~C~a~N~~ 184 (202)
.|+...|.|.+.|.-++ .|+|.|||..+. .... .+..+.+.... .....+...+...|+|.+.-..
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 46677999999996444 469999999876 2211 11111121221 1112334566778999988743
No 176
>PHA03376 BARF1; Provisional
Probab=97.04 E-value=0.0055 Score=47.89 Aligned_cols=85 Identities=14% Similarity=0.071 Sum_probs=54.5
Q ss_pred EEecCCeEEEEEEEE---eecCCceEEEeCC----EEcc-------------cCCcEEEEEeeCCeEEEEEccCCCCCCE
Q psy5280 115 YGIKNENSSLFWFVY---GYPKPKVSFYFND----ELIE-------------MGGRYDSSYTRNGQATLFINKMLDRDVG 174 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~---G~P~P~i~W~k~g----~~l~-------------~~~r~~i~~~~~~~~~L~I~~~~~~D~G 174 (202)
.+..|+++.|.|.-. ..+.-.|.|+|.+ ..+. ...++.+ ..+.++.+|.|.++..+|.|
T Consensus 22 ta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~-~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 22 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI-HRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEE-EecCCeEEEEEEeeeecCCc
Confidence 567899999999764 1233468999942 2111 1122333 22346778999999999999
Q ss_pred EEEEEEEeCCceEE-----EEEE---EEeecCCC
Q psy5280 175 MYEALASNEHGTAR-----QRVS---SGNPAQGS 200 (202)
Q Consensus 175 ~Y~C~a~N~~G~~~-----~~~~---L~V~~~~~ 200 (202)
+|.|...-.-.... +++. |.|.+.++
T Consensus 101 tY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~ 134 (221)
T PHA03376 101 NYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERS 134 (221)
T ss_pred eEEEEEEcCCCceeeeeeeeeeecceEEEEeccc
Confidence 99999886543322 2233 66776443
No 177
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.94 E-value=0.0039 Score=40.25 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=36.4
Q ss_pred EecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCC
Q psy5280 116 GIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEH 184 (202)
Q Consensus 116 v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 184 (202)
...|.+|.|.|...+. .+.|.+++..+..+.. .+.+.+-. ++.|.|.|.+.+..
T Consensus 4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~-----------~~~~~~~~-e~~G~Y~C~~~~~~ 57 (65)
T cd07692 4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE-----------KYLSLNHF-SSSGYYHCTADNAN 57 (65)
T ss_pred EEeccEEEEECCCCCC---CceEEeCCccCCCCCc-----------eEEeeccC-CCCceEEEEeCCCc
Confidence 4579999999975532 3999999966554221 22223333 78999999997543
No 178
>KOG4597|consensus
Probab=96.91 E-value=0.001 Score=58.20 Aligned_cols=87 Identities=20% Similarity=0.100 Sum_probs=65.1
Q ss_pred eEEeccCCeeEEecCCeEEEEEEEEeecCCceEEEe---CCEEcccCC-----cEEEEEeeCCeEEEEEccCCCCCCEEE
Q psy5280 105 RFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYF---NDELIEMGG-----RYDSSYTRNGQATLFINKMLDRDVGMY 176 (202)
Q Consensus 105 ~fi~~~~~~~~v~~G~~v~L~C~v~G~P~P~i~W~k---~g~~l~~~~-----r~~i~~~~~~~~~L~I~~~~~~D~G~Y 176 (202)
.++..+... .+.+++++.+.|-+.|.|.+.|+|.+ |+..+.... +..+ .....|.|-+....|+|.|
T Consensus 198 ~l~~cpa~w-~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~v----tstcql~ic~ewq~~a~w~ 272 (560)
T KOG4597|consen 198 ALVDCPAEW-FVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVV----TSTCQLVICNEWQADAGWY 272 (560)
T ss_pred ccccCcchh-hcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcce----eeeeeEEEcchhhcCCCce
Confidence 344445555 77889999999999999999999976 332222111 1112 2356899999999999999
Q ss_pred EEEEEeCCceEEEEEEEEee
Q psy5280 177 EALASNEHGTARQRVSSGNP 196 (202)
Q Consensus 177 ~C~a~N~~G~~~~~~~L~V~ 196 (202)
+|.|.|.+|.....+.+.+.
T Consensus 273 tCs~rcg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 273 TCSARCGAGFLRRDVPCSSV 292 (560)
T ss_pred eeccccccceeeccceeeee
Confidence 99999999998888877654
No 179
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.90 E-value=0.014 Score=39.13 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=41.3
Q ss_pred CCeEEEEEEEEeecCC--ceEEEeCCEEcccCCcEEEEE-eeCCe----EEEEEccCCCCCCEEEEEEEEeCCc
Q psy5280 119 NENSSLFWFVYGYPKP--KVSFYFNDELIEMGGRYDSSY-TRNGQ----ATLFINKMLDRDVGMYEALASNEHG 185 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P--~i~W~k~g~~l~~~~r~~i~~-~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~~G 185 (202)
++.+.|.|.+.|.-+. .|+|++++..+.......... ..++. ..|.+. ..+...|+|.+.....
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 7889999999996444 589999999876543222111 11222 234444 4455589999987654
No 180
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.90 E-value=0.0076 Score=41.83 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=40.8
Q ss_pred ecCCeEEEEEEEEee-cCC-ceEEEeCCEEcccCCc-EEEEEeeCC----eEEEEEccCCCCCCEEEEEEEEeCCce
Q psy5280 117 IKNENSSLFWFVYGY-PKP-KVSFYFNDELIEMGGR-YDSSYTRNG----QATLFINKMLDRDVGMYEALASNEHGT 186 (202)
Q Consensus 117 ~~G~~v~L~C~v~G~-P~P-~i~W~k~g~~l~~~~r-~~i~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 186 (202)
..|+.+.|.|.+.|. |.. .++|++||..+..... .....+..+ ...|.+ ...+...|+|.+.-....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCCCC
Confidence 358889999999995 544 5799999998765311 111111111 123333 334556899999876543
No 181
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.80 E-value=0.0033 Score=40.93 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=35.8
Q ss_pred CCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEe
Q psy5280 119 NENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASN 182 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 182 (202)
...|.|.|.+ .-.|.|+| |..+... .+.+|.+......-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~----------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEV----------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccccc----------cccEEeccCcccCCCcceEecCcc
Confidence 4578999965 24599999 5444321 145677788888889999999877
No 182
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.80 E-value=0.012 Score=42.52 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=43.7
Q ss_pred cCCeEEEEEEEEee-cCC-ceEEEeCCEEcccCCcEE-EEEeeC-C----eEEEEEccCCCCC-CEEEEEEEEeCCceEE
Q psy5280 118 KNENSSLFWFVYGY-PKP-KVSFYFNDELIEMGGRYD-SSYTRN-G----QATLFINKMLDRD-VGMYEALASNEHGTAR 188 (202)
Q Consensus 118 ~G~~v~L~C~v~G~-P~P-~i~W~k~g~~l~~~~r~~-i~~~~~-~----~~~L~I~~~~~~D-~G~Y~C~a~N~~G~~~ 188 (202)
++..+.|.|.+.|. |.. .|+|.+|+..+....... ...... + .+.|.+....-.+ ...|+|.+.-......
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~ 96 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT 96 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence 56779999999995 543 679999998876432110 101111 1 2345544333323 4589999987655554
Q ss_pred EEE
Q psy5280 189 QRV 191 (202)
Q Consensus 189 ~~~ 191 (202)
..+
T Consensus 97 ~~~ 99 (115)
T cd05769 97 DKW 99 (115)
T ss_pred eee
Confidence 443
No 183
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.75 E-value=0.017 Score=40.18 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=38.3
Q ss_pred cCCeEEEEEEEEee-cCC-ceEEEeCCEEcccCCcE-EEEEeeCCe----EEEEEccCCCCCCEEEEEEEEeCC
Q psy5280 118 KNENSSLFWFVYGY-PKP-KVSFYFNDELIEMGGRY-DSSYTRNGQ----ATLFINKMLDRDVGMYEALASNEH 184 (202)
Q Consensus 118 ~G~~v~L~C~v~G~-P~P-~i~W~k~g~~l~~~~r~-~i~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~~ 184 (202)
.++.+.|.|.+.|. |.. .++|.+||..+...... .+..+.++. ..|.+. ..+...|+|.+.-..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence 35668999999995 543 57999999987542111 111111111 234443 345568999997653
No 184
>PHA02633 hypothetical protein; Provisional
Probab=96.63 E-value=0.0074 Score=38.44 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=33.7
Q ss_pred eEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEeecC
Q psy5280 160 QATLFINKMLDRDVGMYEALASNEHGTARQRVSSGNPAQ 198 (202)
Q Consensus 160 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~ 198 (202)
...|.|..+..+|+|.|.|+..|..-....+..|+|...
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 457899999999999999999999888888888887654
No 185
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.44 E-value=0.021 Score=39.83 Aligned_cols=64 Identities=11% Similarity=0.084 Sum_probs=36.1
Q ss_pred cCCeEEEEEEEEeecCC--ceEEEeCCEEcccCCcEEEEEeeCCe----EEEEEccCCCCCCEEEEEEEEeC
Q psy5280 118 KNENSSLFWFVYGYPKP--KVSFYFNDELIEMGGRYDSSYTRNGQ----ATLFINKMLDRDVGMYEALASNE 183 (202)
Q Consensus 118 ~G~~v~L~C~v~G~P~P--~i~W~k~g~~l~~~~r~~i~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~ 183 (202)
.+..+.|.|.+.|.-++ .++|.+||..+..+..........+. ..|.+..-. ....|+|.+.-.
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 35678999999995444 46999999986543111100111112 234333221 233599999873
No 186
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.32 E-value=0.028 Score=40.50 Aligned_cols=66 Identities=14% Similarity=0.076 Sum_probs=44.5
Q ss_pred EEecCCeEEEEEEEEeecCCc---eEEEeCCE-Ec--------------ccCCcEEEEEe-eCCeEEEEEccCCCCCCEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKPK---VSFYFNDE-LI--------------EMGGRYDSSYT-RNGQATLFINKMLDRDVGM 175 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~---i~W~k~g~-~l--------------~~~~r~~i~~~-~~~~~~L~I~~~~~~D~G~ 175 (202)
.+..|..+.|.|.++|.-... ++|+|.-. .+ ...+++.+... ..+.-+|.|.++..+|++.
T Consensus 9 lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~ 88 (115)
T cd05721 9 LASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDI 88 (115)
T ss_pred EEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeE
Confidence 566788999999998866554 68887411 11 01233433222 2334589999999999999
Q ss_pred EEEEE
Q psy5280 176 YEALA 180 (202)
Q Consensus 176 Y~C~a 180 (202)
|.|..
T Consensus 89 Y~Ca~ 93 (115)
T cd05721 89 YFCKI 93 (115)
T ss_pred EEEEe
Confidence 99954
No 187
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.18 E-value=0.025 Score=39.71 Aligned_cols=78 Identities=10% Similarity=-0.052 Sum_probs=41.6
Q ss_pred eEEeccCCeeEEecCCeEEEEEEEEeec--CC-ceEEEeCCEEcccCCcEEEEEeeCC----eEEEEEccCCCCCCEEEE
Q psy5280 105 RFLNQEHDTQYGIKNENSSLFWFVYGYP--KP-KVSFYFNDELIEMGGRYDSSYTRNG----QATLFINKMLDRDVGMYE 177 (202)
Q Consensus 105 ~fi~~~~~~~~v~~G~~v~L~C~v~G~P--~P-~i~W~k~g~~l~~~~r~~i~~~~~~----~~~L~I~~~~~~D~G~Y~ 177 (202)
.++..+... ....+..+.|.|.+.|.- .. .|+|.++|.. ........ .+.++ .+.|.+..-.-.....|+
T Consensus 6 V~l~pPs~e-~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~-~~~dgTys~~S~L~v~~~~W~~g~~yt 82 (99)
T cd04986 6 LSLQRPALE-DLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAE-SDQCGCYSVSSVLPGCAEEWNKGEPFA 82 (99)
T ss_pred EEEECcChH-HhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcc-cCCCCCEEEEEEEEeCHHHhcCCCeEE
Confidence 344444433 333678899999999954 32 5899999865 11000000 11111 234444322222334699
Q ss_pred EEEEeCCc
Q psy5280 178 ALASNEHG 185 (202)
Q Consensus 178 C~a~N~~G 185 (202)
|.+.....
T Consensus 83 C~V~H~~l 90 (99)
T cd04986 83 CTVTHPEG 90 (99)
T ss_pred EEEECCCc
Confidence 99987654
No 188
>KOG1480|consensus
Probab=96.14 E-value=0.0016 Score=60.08 Aligned_cols=78 Identities=19% Similarity=0.163 Sum_probs=60.0
Q ss_pred EEeccCCeeEEecCCeEEEEEE-EEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCC
Q psy5280 106 FLNQEHDTQYGIKNENSSLFWF-VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEH 184 (202)
Q Consensus 106 fi~~~~~~~~v~~G~~v~L~C~-v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 184 (202)
|...+.-+ .|..+..+.+.|. ..|.|...++|+|++..+.+...+.. ...+.|.+..+...|.|.|+|+|.|.+
T Consensus 132 f~~~p~~q-~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~----~~d~~li~~~arlsd~~nytc~a~ni~ 206 (909)
T KOG1480|consen 132 FEQSPVGQ-EVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIR----ASDHNLIISQARLSDSGNYTCEATNIV 206 (909)
T ss_pred hccChhhh-eecccccccccccCcccchhhhhhccccCCCCCccccchh----hhcCCccccchhhhhcccceeeeehhh
Confidence 33334444 6667777888776 57889999999999988887444443 345779999999999999999999999
Q ss_pred ceEE
Q psy5280 185 GTAR 188 (202)
Q Consensus 185 G~~~ 188 (202)
+...
T Consensus 207 ~~r~ 210 (909)
T KOG1480|consen 207 AKRK 210 (909)
T ss_pred cccc
Confidence 8653
No 189
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.08 E-value=0.067 Score=37.43 Aligned_cols=65 Identities=11% Similarity=-0.033 Sum_probs=40.9
Q ss_pred EEecCCeEEE-EEEE-EeecCCceEEEeCCEEccc-------CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCc
Q psy5280 115 YGIKNENSSL-FWFV-YGYPKPKVSFYFNDELIEM-------GGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185 (202)
Q Consensus 115 ~v~~G~~v~L-~C~v-~G~P~P~i~W~k~g~~l~~-------~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 185 (202)
.+.+|+.+.+ .|.+ .|.|.++|+|+.+...... ++.+.+ .+.+.+......|.-.++|.+....-
T Consensus 12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV------~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTV------TSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred EeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEE------EEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 5667888877 7764 6889999999987332211 112222 23455444444555689999988754
No 190
>KOG3515|consensus
Probab=96.01 E-value=0.0054 Score=57.08 Aligned_cols=70 Identities=21% Similarity=0.163 Sum_probs=52.9
Q ss_pred CCeeEEecCCeEEEEEEEEeecC-CceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceE
Q psy5280 111 HDTQYGIKNENSSLFWFVYGYPK-PKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187 (202)
Q Consensus 111 ~~~~~v~~G~~v~L~C~v~G~P~-P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 187 (202)
.+. .+..|++|.|.|.+.|.|+ +.+.|++.+..+. .++.. ....+|......+..-+.|.|.|.|..|..
T Consensus 15 l~~-~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~ 85 (741)
T KOG3515|consen 15 LTV-GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYAT----IADPTLVTTGDVRDTVAELNCRAFNSVGMP 85 (741)
T ss_pred CCh-hhccCCcceeeeecCCCCCCcceEEEecCcccc--ccccc----ccCCceeeecchhhhhhhhhhhhcccccCc
Confidence 344 6788999999999988765 4799999987766 33333 335667777777777789999999986654
No 191
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.81 E-value=0.031 Score=41.22 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=46.7
Q ss_pred EEecCCeEEEEEEEEeec-----CCceEEEeCCEEcccC----CcE--------EEEEeeCCeEEEEEccCCCCCCEEEE
Q psy5280 115 YGIKNENSSLFWFVYGYP-----KPKVSFYFNDELIEMG----GRY--------DSSYTRNGQATLFINKMLDRDVGMYE 177 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P-----~P~i~W~k~g~~l~~~----~r~--------~i~~~~~~~~~L~I~~~~~~D~G~Y~ 177 (202)
.....++|.|.|.+.... .-.|.|..++..+-.- .+. .+.....+..+|.+.....- .|.|+
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 455689999999987522 2348999998876321 101 01000112344777664444 79999
Q ss_pred EEEEeCCceEEEEEEEEee
Q psy5280 178 ALASNEHGTARQRVSSGNP 196 (202)
Q Consensus 178 C~a~N~~G~~~~~~~L~V~ 196 (202)
|.+..........+.|...
T Consensus 102 CeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 102 CEVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEEETTEEEEEEEEEEE-
T ss_pred EEEEecCCCceEEEEEEEE
Confidence 9999999888888888764
No 192
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.67 E-value=0.2 Score=34.72 Aligned_cols=66 Identities=11% Similarity=0.179 Sum_probs=36.5
Q ss_pred cCCeEEEEEEEEee-cCC-ceEEEeCCEEcccCCcE-EEEEeeCCe----EEEEEccCCCCCCEEEEEEEEeCC
Q psy5280 118 KNENSSLFWFVYGY-PKP-KVSFYFNDELIEMGGRY-DSSYTRNGQ----ATLFINKMLDRDVGMYEALASNEH 184 (202)
Q Consensus 118 ~G~~v~L~C~v~G~-P~P-~i~W~k~g~~l~~~~r~-~i~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~~ 184 (202)
.++.+.|.|.+.|. |.. .|+|.|||.. ...... ......++. ..|.+....-.....|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999995 443 5689999997 322100 000010111 234443322122457999988754
No 193
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.35 E-value=0.028 Score=46.04 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=41.0
Q ss_pred cCCceEEEeC-CEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCC
Q psy5280 132 PKPKVSFYFN-DELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEH 184 (202)
Q Consensus 132 P~P~i~W~k~-g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 184 (202)
..|...|.-+ |..+..++++.+ ..++.|.+.+....++|.|+|......
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nI----T~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNI----TETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEE----ccCceEEeeccccccCCceEEEEEEEe
Confidence 4688999864 667777778888 667889999999999999999988665
No 194
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=95.26 E-value=0.011 Score=38.40 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=20.6
Q ss_pred eeeeecCCCCCeeeecCCCeecC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFH 79 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~ 79 (202)
..|++.|.|.+.+.|+|+|.++.
T Consensus 3 l~c~v~g~P~P~v~W~kdg~~l~ 25 (67)
T cd05863 3 LPVKVAAYPPPEFQWYKDGKLIS 25 (67)
T ss_pred EEEEEEEeCCCEEEEEECCEECc
Confidence 46889999999999999999875
No 195
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=95.11 E-value=0.025 Score=39.39 Aligned_cols=26 Identities=8% Similarity=0.020 Sum_probs=22.1
Q ss_pred eeeeecCCCCCeeeecCCCeecCCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPDK 82 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~~ 82 (202)
..|.+.|.+++.+.|+|+|.++.++.
T Consensus 20 l~C~~~G~p~p~v~W~kdg~~l~~~~ 45 (98)
T cd05762 20 LFCKVTGTQPITCTWMKFRKQIQEGE 45 (98)
T ss_pred EEEEEcccCCCceEEEECCEEecCCC
Confidence 55888999999999999999986543
No 196
>KOG3515|consensus
Probab=95.00 E-value=0.092 Score=49.12 Aligned_cols=82 Identities=17% Similarity=0.123 Sum_probs=50.8
Q ss_pred EEecCCeEEEEEEE--EeecCCceEEEeCCEEcccCC--cEE-----E-EEeeCCeEEEEEccCCCCCCEEEEEEEEeC-
Q psy5280 115 YGIKNENSSLFWFV--YGYPKPKVSFYFNDELIEMGG--RYD-----S-SYTRNGQATLFINKMLDRDVGMYEALASNE- 183 (202)
Q Consensus 115 ~v~~G~~v~L~C~v--~G~P~P~i~W~k~g~~l~~~~--r~~-----i-~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~- 183 (202)
....+..+.+.|.+ .+.|.+.+.|..++....... +.. + .+. .....|.+......+.|.|+|.|.|.
T Consensus 108 ~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~-t~~s~l~~~v~Rka~~g~~tC~A~nr~ 186 (741)
T KOG3515|consen 108 FQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSY-TEPSLLKQTVSRKADNGNYTCPANNRN 186 (741)
T ss_pred hhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCcee-ccccceeeEEEEecCCceeEccccccc
Confidence 44567889999954 467888999999876543211 110 1 000 11345777778889999999999994
Q ss_pred --CceEEEEEEEEeec
Q psy5280 184 --HGTARQRVSSGNPA 197 (202)
Q Consensus 184 --~G~~~~~~~L~V~~ 197 (202)
.+..-....+.|..
T Consensus 187 s~~l~~~~~~~i~v~~ 202 (741)
T KOG3515|consen 187 SPGLSFAKQLTIIVEA 202 (741)
T ss_pred CccccccceeEeeccc
Confidence 34433334444443
No 197
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=94.59 E-value=0.04 Score=37.95 Aligned_cols=25 Identities=8% Similarity=-0.037 Sum_probs=21.2
Q ss_pred eeeeeecCCCCCeeeecCCCeecCC
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~~p 80 (202)
...|.+.|.|.+.+.|+|+|.++..
T Consensus 23 ~l~C~~~G~P~P~i~W~k~g~~l~~ 47 (94)
T cd05848 23 ILNCEARGNPVPTYRWLRNGTEIDT 47 (94)
T ss_pred EEEEEeeecCCCEEEEEECCeECcc
Confidence 3568889999999999999988754
No 198
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=94.33 E-value=0.21 Score=35.01 Aligned_cols=70 Identities=10% Similarity=0.033 Sum_probs=42.2
Q ss_pred EEecCCeEEEEEEEEe-ecC--CceEEEeCCEEcccCCcEE-EE--EeeCCeEEEEEccCCCCCCE-EEEEEEEeCCc
Q psy5280 115 YGIKNENSSLFWFVYG-YPK--PKVSFYFNDELIEMGGRYD-SS--YTRNGQATLFINKMLDRDVG-MYEALASNEHG 185 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G-~P~--P~i~W~k~g~~l~~~~r~~-i~--~~~~~~~~L~I~~~~~~D~G-~Y~C~a~N~~G 185 (202)
...+|..+++.|.+.| .|. ..|.|+++...+....-.. +. ........+.+.- ..+|.| .|+|.|.-.++
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~ 87 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID 87 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence 3468999999999975 455 4689998776655432100 00 0001123344443 377777 89999886554
No 199
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=94.20 E-value=0.025 Score=36.90 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=21.7
Q ss_pred eeeeecCCCCCeeeecCCCeecCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
..|++.|.|.+.+.|+|+|.++..+
T Consensus 3 ~~c~v~G~P~P~v~W~k~g~~l~~~ 27 (70)
T cd05864 3 IPVKYYGYPPPEVKWYKNGQLIVLN 27 (70)
T ss_pred EEeEEEEeCCCEEEEEECCEECCCC
Confidence 4688999999999999999997653
No 200
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=94.07 E-value=0.03 Score=36.89 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=21.7
Q ss_pred eeeeecCCCCCeeeecCCCeecCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
..|++.|.|.+.+.|+|+|.++..+
T Consensus 3 l~c~v~g~P~P~v~W~kdg~~l~~~ 27 (72)
T cd07702 3 LTPKVKAFPAPEVIWLKDGLPAAEK 27 (72)
T ss_pred EEeeEEEcCCCeEEEEECCEECCCC
Confidence 4688999999999999999987654
No 201
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=94.03 E-value=0.05 Score=36.50 Aligned_cols=26 Identities=4% Similarity=0.009 Sum_probs=22.2
Q ss_pred eeeeecCCCCCeeeecCCCeecCCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPDK 82 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~~ 82 (202)
+.|.+.|.|.+.+.|+|+|.++.++.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~ 28 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESD 28 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCC
Confidence 35788999999999999999987654
No 202
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=93.93 E-value=0.036 Score=38.89 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=23.1
Q ss_pred eeeeeecCCCCCeeeecCCCeecCCCC
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPFHPDK 82 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~~p~~ 82 (202)
...|+++|.|++.+.|+|+|.++..+.
T Consensus 22 ~l~~~v~g~P~P~v~W~kdg~~l~~~~ 48 (101)
T cd05859 22 EFVVEVEAYPPPQIRWLKDNRTLIENL 48 (101)
T ss_pred EEEEEEEEeCCCceEEEECCEECcCCc
Confidence 567999999999999999999976543
No 203
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=93.84 E-value=0.06 Score=36.13 Aligned_cols=25 Identities=4% Similarity=0.026 Sum_probs=21.5
Q ss_pred eeeeecCCCCCeeeecCCCeecCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
..|.+.|.|.+.+.|+|+|.++..+
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~ 27 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNES 27 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCC
Confidence 4578899999999999999998653
No 204
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=93.79 E-value=0.075 Score=36.06 Aligned_cols=24 Identities=4% Similarity=-0.230 Sum_probs=19.8
Q ss_pred eeeeecCCCCCeeeecCCCeecCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p 80 (202)
..|.+.|.|.+.+.|+|+|.++..
T Consensus 21 l~C~~~G~P~P~v~W~k~~~~~~~ 44 (88)
T cd05851 21 LECFALGNPVPVIRWRKILEPMPA 44 (88)
T ss_pred EEEEecccCCCEEEEEECCcCCCC
Confidence 558889999999999999977543
No 205
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=93.66 E-value=0.16 Score=35.96 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=37.0
Q ss_pred eEEEeCCEEccc---CCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEE-EEEEEe
Q psy5280 136 VSFYFNDELIEM---GGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ-RVSSGN 195 (202)
Q Consensus 136 i~W~k~g~~l~~---~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~L~V 195 (202)
++|..+...... +.++.. ...+..|.|..+...|+|.|....+|..|.+.. .+.+.|
T Consensus 46 ltW~n~~~~~~~~~~n~r~~F---~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 46 LTWKNDSTPSYNSSFNNRFNF---TSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp EEEETTEEEESSTTHHHHEEE---ETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred EEEcCCCcccccccccceEee---eccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 456544443332 234443 245678999999999999999999999998843 344444
No 206
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=93.53 E-value=0.1 Score=35.57 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=20.1
Q ss_pred eeeeecCCCCCeeeecCCCeecCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
..|.+.+.|.+.+.|+++|..+..+
T Consensus 23 L~C~~~g~P~p~v~W~k~g~~l~~~ 47 (92)
T cd05747 23 FSCDVDGEPAPTVTWMREGQIIVSS 47 (92)
T ss_pred EEEEEeecCCCEEEEEECCEECCCC
Confidence 4477889999999999999886543
No 207
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=93.43 E-value=0.05 Score=35.35 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=21.5
Q ss_pred eeeeecCCCCCeeeecCCCeecCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
..|.+.|.|.+.+.|+|+|.++..+
T Consensus 3 l~c~v~g~P~p~v~W~k~g~~l~~~ 27 (71)
T cd04976 3 LPVKVKAYPPPEIQWYKNGKLISEK 27 (71)
T ss_pred EEeEEEEeCCCEEEEEECCEECCCC
Confidence 4688999999999999999987654
No 208
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=93.31 E-value=0.096 Score=35.56 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.1
Q ss_pred eeeeecCCCCCeeeecCCCeecCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p 80 (202)
..|.+.+.+.+.+.|+|+|..+..
T Consensus 21 l~C~~~g~P~p~i~W~k~g~~l~~ 44 (100)
T cd07693 21 LNCKAEGRPTPTIQWLKNGQPLET 44 (100)
T ss_pred EEeeCCcCCCCEEEEEECCEECcc
Confidence 448889999999999999988654
No 209
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=93.29 E-value=0.1 Score=35.86 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=19.7
Q ss_pred eeeeecCCCCCeeeecCCCeecC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFH 79 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~ 79 (202)
..|.+.++|.+.+.|+++|.++.
T Consensus 24 l~C~a~g~P~p~i~W~~~g~~l~ 46 (94)
T cd05850 24 LGCRARASPPATYRWKMNGTEIK 46 (94)
T ss_pred EEeEceeCCCCEEEEEECCEECc
Confidence 45878899999999999998865
No 210
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=93.00 E-value=0.078 Score=34.98 Aligned_cols=25 Identities=0% Similarity=-0.128 Sum_probs=21.5
Q ss_pred eeeeecCCCCCeeeecCCCeecCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
..|++.|.|.+.+.|+|+|.++..+
T Consensus 3 l~C~v~G~P~P~v~W~k~~~~l~~~ 27 (75)
T cd05893 3 LECRVSGVPHPQIFWKKENESLTHN 27 (75)
T ss_pred EEEEEeEecCCEEEEEECCEECCCC
Confidence 5689999999999999999887543
No 211
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=92.68 E-value=0.11 Score=34.33 Aligned_cols=25 Identities=4% Similarity=-0.088 Sum_probs=21.6
Q ss_pred eeeeecCCCCCeeeecCCCeecCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
..|.+.|.|.+.+.|+|+|..+..+
T Consensus 3 l~C~v~G~P~P~i~W~k~~~~i~~~ 27 (75)
T cd05892 3 LECQISAIPPPKIFWKRNNEMVQYN 27 (75)
T ss_pred EEEEEEecCCCeEEEEECCEECcCC
Confidence 4688999999999999999987653
No 212
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=92.55 E-value=0.12 Score=34.05 Aligned_cols=25 Identities=8% Similarity=0.189 Sum_probs=21.2
Q ss_pred eeeeecCCCCCeeeecCCCeecCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
..|.+.|.|.+.+.|+|+|.++.+.
T Consensus 3 L~C~~~g~P~p~v~W~k~g~~l~~~ 27 (77)
T cd05760 3 LRCHIDGHPRPTYQWFRDGTPLSDG 27 (77)
T ss_pred EEEEeeecCCCcEEEEECCEECCCC
Confidence 4688899999999999999987554
No 213
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=92.41 E-value=0.12 Score=33.36 Aligned_cols=25 Identities=8% Similarity=0.071 Sum_probs=21.5
Q ss_pred eeeeecCCCCCeeeecCCCeecCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
..|.+.|.|.+.+.|+|+|..+.+.
T Consensus 4 l~C~~~G~P~p~v~W~k~g~~~~~~ 28 (71)
T cd05723 4 FECEVTGKPTPTVKWVKNGDMVIPS 28 (71)
T ss_pred EEEEEEEeCCCEEEEEECCeECCCC
Confidence 5688999999999999999887664
No 214
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=92.33 E-value=0.12 Score=33.78 Aligned_cols=24 Identities=4% Similarity=-0.076 Sum_probs=20.5
Q ss_pred eeeeecCCCCCeeeecCCCeecCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p 80 (202)
..|.+.|.|.+.+.|+|+|.++..
T Consensus 3 l~C~~~G~P~p~v~W~k~~~~~~~ 26 (74)
T cd05738 3 MLCAASGNPDPEITWFKDFLPVDT 26 (74)
T ss_pred EEEEEeEecCCEEEEEECCEECcc
Confidence 468889999999999999988653
No 215
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=92.31 E-value=0.15 Score=33.39 Aligned_cols=24 Identities=4% Similarity=-0.100 Sum_probs=21.1
Q ss_pred eeeeecCCCCCeeeecCCCeecCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p 80 (202)
..|++.|.|.+.+.|+|+|..+..
T Consensus 3 L~C~v~G~P~P~v~W~k~~~~i~~ 26 (75)
T cd05744 3 LECRVSAIPPPQIFWKKNNEMLTY 26 (75)
T ss_pred EEEEEeecCCCeEEEEECCEECCC
Confidence 568999999999999999988754
No 216
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=92.30 E-value=0.095 Score=33.65 Aligned_cols=25 Identities=8% Similarity=-0.004 Sum_probs=20.8
Q ss_pred eeeeecCCCCCeeeecCCCeecCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
..|.+.|.|.+.+.|+|+|.++.+.
T Consensus 3 L~C~~~g~P~p~i~W~k~g~~~~~~ 27 (69)
T cd05746 3 IPCSAQGDPEPTITWNKDGVQVTES 27 (69)
T ss_pred eEecceEeCCCEEEEEECCEECCCC
Confidence 4688889999999999999886553
No 217
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=91.96 E-value=0.17 Score=34.14 Aligned_cols=25 Identities=8% Similarity=0.025 Sum_probs=21.7
Q ss_pred eeeeeecCCCCCeeeecCCCeecCC
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~~p 80 (202)
...|.+.|.|.+.+.|+++|.++..
T Consensus 14 ~l~c~~~G~P~P~v~W~k~~~~i~~ 38 (86)
T cd05894 14 RLDVPISGEPAPTVTWSRGDKAFTE 38 (86)
T ss_pred EEEeeEeecCCCeEEEEECCEECcc
Confidence 3668899999999999999998765
No 218
>PHA02982 hypothetical protein; Provisional
Probab=91.88 E-value=0.68 Score=36.89 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=47.8
Q ss_pred EEecCCeEEEEEEEE-eecCCceEEEeC-CEEccc------------------CCcEEEEEeeCCeEEEEEccCCCCCCE
Q psy5280 115 YGIKNENSSLFWFVY-GYPKPKVSFYFN-DELIEM------------------GGRYDSSYTRNGQATLFINKMLDRDVG 174 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~-G~P~P~i~W~k~-g~~l~~------------------~~r~~i~~~~~~~~~L~I~~~~~~D~G 174 (202)
....++.|.|.|... +.-..++.|.++ +..|.+ ...+.++. ....++|.|.++..+..|
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv-~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSV-SGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEE-eccceeEEeccCCcccCC
Confidence 445689999999732 222335789875 333331 11223322 345789999999999999
Q ss_pred EEEEEEEeCCceE
Q psy5280 175 MYEALASNEHGTA 187 (202)
Q Consensus 175 ~Y~C~a~N~~G~~ 187 (202)
.|+|.|....+..
T Consensus 114 CYtc~~ks~~~k~ 126 (251)
T PHA02982 114 CFTCEAKDAEGKE 126 (251)
T ss_pred ceEEEEecCCCch
Confidence 9999999877644
No 219
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=91.50 E-value=2.3 Score=28.51 Aligned_cols=35 Identities=14% Similarity=0.052 Sum_probs=25.8
Q ss_pred EEEEccCCCCCCEEEEEEE-EeCCceEEEEEEEEee
Q psy5280 162 TLFINKMLDRDVGMYEALA-SNEHGTARQRVSSGNP 196 (202)
Q Consensus 162 ~L~I~~~~~~D~G~Y~C~a-~N~~G~~~~~~~L~V~ 196 (202)
.+.......+|+|...|.| .+..-.......|.|.
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v~ 79 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILVL 79 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEcC
Confidence 4556677889999999999 7766666666666553
No 220
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=91.25 E-value=0.14 Score=33.56 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=21.3
Q ss_pred eeeeeecCCCCCeeeecCCCeecCC
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~~p 80 (202)
...|.+.|.|.+.+.|+++|.++..
T Consensus 5 ~l~C~a~G~P~P~i~W~k~g~~i~~ 29 (76)
T cd05868 5 TLICRANGNPKPSISWLTNGVPIEI 29 (76)
T ss_pred EEEEEeeEeCCCeEEEEECCEEccc
Confidence 3568999999999999999998753
No 221
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=91.13 E-value=0.25 Score=32.78 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=21.6
Q ss_pred eeeeeecCCCCCeeeecCCCeecCCC
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
...|.+.|.|.+.+.|+|+|.++.++
T Consensus 13 ~L~C~~~g~P~p~i~W~k~g~~l~~~ 38 (85)
T cd05857 13 KFRCPAAGNPTPTMRWLKNGKEFKQE 38 (85)
T ss_pred EEEEEcCCCCCCEEEEEECCEECCCC
Confidence 35688889998999999999987654
No 222
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=91.10 E-value=0.23 Score=32.09 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=21.1
Q ss_pred eeeeecCCCCCeeeecCCCeecCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
..|.+.|.|.+.+.|+++|..+..+
T Consensus 4 l~c~~~G~P~p~v~W~k~g~~l~~~ 28 (74)
T cd05748 4 LEVPISGRPTPTVTWSKDGKPLKLS 28 (74)
T ss_pred EEeeEeeeCCCeEEEEECCEEcCCC
Confidence 4688899999999999999987543
No 223
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=90.93 E-value=0.2 Score=32.76 Aligned_cols=26 Identities=4% Similarity=-0.212 Sum_probs=21.1
Q ss_pred eeeeeecCCCCCeeeecCCCeecCCC
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
...|++.+.|.+.+.|+|+|..+.+.
T Consensus 5 ~l~C~~~g~P~p~v~W~k~~~~l~~~ 30 (73)
T cd05852 5 IIECKPKAAPKPKFSWSKGTELLVNN 30 (73)
T ss_pred EEEEecceeCCCEEEEEeCCEecccC
Confidence 35688999999999999999876543
No 224
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=90.45 E-value=0.24 Score=32.34 Aligned_cols=24 Identities=8% Similarity=0.030 Sum_probs=20.3
Q ss_pred eeeeecCCCCCeeeecCCCeecCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p 80 (202)
..|.+.|.|.+.+.|+++|.++..
T Consensus 6 l~C~~~G~P~p~i~W~k~g~~i~~ 29 (76)
T cd05867 6 LDCQVEGIPTPNITWSINGAPIEG 29 (76)
T ss_pred EEEEeeEeCCCeEEEEECCEECCC
Confidence 568888999999999999988654
No 225
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=90.45 E-value=0.36 Score=33.15 Aligned_cols=24 Identities=0% Similarity=-0.079 Sum_probs=20.1
Q ss_pred eeeeecCCCCCeeeecCCCeecCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p 80 (202)
..|.+.|.|.+.+.|+|+|.++..
T Consensus 24 l~C~a~G~P~P~i~W~k~~~~i~~ 47 (93)
T cd05849 24 VNCRARANPFPIYKWRKNNLDIDL 47 (93)
T ss_pred EeCcCccCCCCEEEEEECCEEccC
Confidence 558888999999999999988654
No 226
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=90.28 E-value=4.1 Score=27.49 Aligned_cols=75 Identities=13% Similarity=0.165 Sum_probs=44.5
Q ss_pred CCCeEEeccCCeeEEec-C--CeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEE
Q psy5280 102 QAPRFLNQEHDTQYGIK-N--ENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEA 178 (202)
Q Consensus 102 ~~P~fi~~~~~~~~v~~-G--~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C 178 (202)
.++.++........... + +...|.+++.|. .+.+.|+-||..+..... ...+.+ .....|.|+.
T Consensus 9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~---------~~~~~~---~~~~~G~h~l 75 (89)
T PF06832_consen 9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQP---------GHQLFW---QPDRPGEHTL 75 (89)
T ss_pred CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCC---------CCeEEe---CCCCCeeEEE
Confidence 35555554443312222 1 245666666766 559999999999844321 122222 2245699999
Q ss_pred EEEeCCceEEE
Q psy5280 179 LASNEHGTARQ 189 (202)
Q Consensus 179 ~a~N~~G~~~~ 189 (202)
.+....|....
T Consensus 76 ~vvD~~G~~~~ 86 (89)
T PF06832_consen 76 TVVDAQGRSAS 86 (89)
T ss_pred EEEcCCCCEEE
Confidence 99888887654
No 227
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=90.24 E-value=0.2 Score=32.56 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=21.5
Q ss_pred eeeeeecCCCCCeeeecCCCeecCCC
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
...|.+.|.|.+.+.|+|+|.++.++
T Consensus 6 ~l~C~~~g~P~p~i~W~k~g~~~~~~ 31 (74)
T cd05745 6 DFLCEAQGYPQPVIAWTKGGSQLSVD 31 (74)
T ss_pred EEEeECCEecCCEEEEEECCEECCCC
Confidence 35688899999999999999886553
No 228
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=90.01 E-value=0.4 Score=32.41 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=19.3
Q ss_pred eeeeecCCCCCeeeecCCCeecC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFH 79 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~ 79 (202)
..|.+.+++.+.+.|+++|.++.
T Consensus 24 l~C~~~g~p~p~i~W~k~~~~l~ 46 (91)
T cd04967 24 LNCRARGSPPPTYRWLMNGTEID 46 (91)
T ss_pred EEEeeeEcCCCEEEEEECCEECC
Confidence 55888888999999999998863
No 229
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=89.91 E-value=0.33 Score=31.52 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=21.1
Q ss_pred eeeeecCCCCCeeeecCCCeecCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
..|.+++.|.+.+.|+|+|..+.+.
T Consensus 3 L~C~v~g~P~p~v~W~k~~~~l~~~ 27 (76)
T cd05736 3 LRCHAEGIPLPRLTWLKNGMDITPK 27 (76)
T ss_pred eEeEeeecCCCEEEEEECCEECCCC
Confidence 4688899999999999999887653
No 230
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=89.83 E-value=0.28 Score=32.23 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.8
Q ss_pred eeeeecCCCCCeeeecCCCeecCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p 80 (202)
..|.+.|.|.+.+.|+|+|.++.+
T Consensus 3 l~C~~~G~P~P~v~W~k~g~~l~~ 26 (77)
T cd05733 3 IKCEAKGNPPPTFSWTRNGTHFDP 26 (77)
T ss_pred EEeeCcccCCCeEEEEECCeECCC
Confidence 468889999999999999988755
No 231
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=89.55 E-value=0.23 Score=33.24 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=21.6
Q ss_pred eeeeeecCCCCCeeeecCCCeecCCC
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
...|.+.|.|.+.+.|+++|.++...
T Consensus 18 ~l~C~~~g~p~p~v~W~k~g~~~~~~ 43 (85)
T cd05728 18 RWECKASGNPRPAYRWLKNGQPLASE 43 (85)
T ss_pred EEEEEeeEeCCCEEEEEECCEECCCC
Confidence 35588899999999999999987553
No 232
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=89.44 E-value=0.26 Score=31.80 Aligned_cols=24 Identities=8% Similarity=-0.099 Sum_probs=20.0
Q ss_pred eeeeecCCCCCeeeecCCCeecCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p 80 (202)
..|.+.|.|.+.+.|+++|.++.+
T Consensus 3 L~C~~~G~P~P~v~W~k~~~~~~~ 26 (71)
T cd05876 3 LECIAEGLPTPEVHWDRIDGPLSP 26 (71)
T ss_pred EEEEeeEecCCeEEEEECCcCCCC
Confidence 468889999999999999976543
No 233
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=88.98 E-value=0.31 Score=32.48 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=20.6
Q ss_pred eeeeecCCCCCeeeecCCCeecCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
..|.+++.+.+.+.|+++|.++..+
T Consensus 20 l~c~~~~~p~~~v~W~~~~~~l~~~ 44 (90)
T PF07679_consen 20 LECEVSGNPPPTVTWYKNGRPLTSS 44 (90)
T ss_dssp EEEEEEESSSSEEEEEETTEEEESS
T ss_pred EEEEEEeCCCCcccccccccceeee
Confidence 4587888888899999999987663
No 234
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=88.94 E-value=0.34 Score=31.96 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.2
Q ss_pred eeeeecCCCCCeeeecCCCeecC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFH 79 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~ 79 (202)
..|++.|.|.+.+.|+|+|.++.
T Consensus 3 l~C~a~G~P~P~i~W~k~g~~l~ 25 (77)
T cd05874 3 IQCEAKGKPPPSFSWTRNGTHFD 25 (77)
T ss_pred EEeeCcccCCCeEEEEECCeECC
Confidence 46889999999999999998864
No 235
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=88.94 E-value=0.43 Score=33.40 Aligned_cols=25 Identities=4% Similarity=0.028 Sum_probs=21.4
Q ss_pred eeeeeecC-CCCCeeeecCCCeecCC
Q psy5280 56 DTQEKLNP-ERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 56 ~~~~~~~~-~~~~~~~w~~~g~~~~p 80 (202)
...|.++| .|++.+.|+|+|.++..
T Consensus 22 ~L~c~v~g~~P~p~v~W~Kdg~~i~~ 47 (101)
T cd04975 22 NLVVEVEAYPPPPHINWTYDNRTLTN 47 (101)
T ss_pred EEEEEEEecCCCCccEEEeCCeeCCC
Confidence 46688999 88889999999999764
No 236
>PHA03042 CD47-like protein; Provisional
Probab=88.89 E-value=2.1 Score=35.48 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=46.6
Q ss_pred EEecCCeEEEEEEEEee-----cCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEE
Q psy5280 115 YGIKNENSSLFWFVYGY-----PKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~-----P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 189 (202)
.....+++.+.|.+..- -.-.+.|..+++.+-.... ....+|.+... ..-.|.|+|.|.+..-....
T Consensus 27 yT~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~-------tn~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~ 98 (286)
T PHA03042 27 YTTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNN-------TNTSSLKFNFS-KNLSGNYTCEAINKFNKIKN 98 (286)
T ss_pred EEecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecC-------CcceEEEEecc-ccCCCceeEEEeecccCccE
Confidence 34568999999988743 2345899999887643221 11244554332 33379999999987665555
Q ss_pred EEEEEe
Q psy5280 190 RVSSGN 195 (202)
Q Consensus 190 ~~~L~V 195 (202)
...|+.
T Consensus 99 ~IeLk~ 104 (286)
T PHA03042 99 TIELQY 104 (286)
T ss_pred EEEEEE
Confidence 555553
No 237
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=88.74 E-value=0.41 Score=30.99 Aligned_cols=21 Identities=5% Similarity=-0.103 Sum_probs=18.2
Q ss_pred eeeeecCCCCCeeeecCCCee
Q psy5280 57 TQEKLNPERPKFEPYLPPGVP 77 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~ 77 (202)
..|.+.|.|.+.+.|+|+|..
T Consensus 3 l~C~~~G~P~P~v~W~k~~~~ 23 (75)
T cd05763 3 LECAATGHPTPQIAWQKDGGT 23 (75)
T ss_pred eEeecccccCCEEEEEeCCCc
Confidence 468889999999999999865
No 238
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=88.60 E-value=0.63 Score=29.82 Aligned_cols=24 Identities=4% Similarity=-0.045 Sum_probs=20.0
Q ss_pred eeeeecC-CCCCeeeecCCCeecCC
Q psy5280 57 TQEKLNP-ERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 57 ~~~~~~~-~~~~~~~w~~~g~~~~p 80 (202)
..|.+.+ .|.+.+.|+++|.++..
T Consensus 3 l~C~~~g~~P~p~~~W~k~g~~l~~ 27 (75)
T cd05750 3 LKCEATSEYPSLRFKWFKDGKELNR 27 (75)
T ss_pred EEEEccCCCCCceEEEEcCCeeccc
Confidence 5688888 88899999999988654
No 239
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=88.45 E-value=0.48 Score=33.47 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=22.5
Q ss_pred ceeeeeecCCCCCeeeecCCCeecCCC
Q psy5280 55 HDTQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 55 ~~~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
-...|.+.|.|.+.+.|.|+|..+...
T Consensus 26 v~L~C~a~G~P~p~i~W~k~g~~l~~~ 52 (109)
T cd05773 26 ANLVCQAQGVPRVQFRWAKNGVPLDLG 52 (109)
T ss_pred EEEEEECcccCCCEEEEEECCEECCCC
Confidence 356788899999999999999987653
No 240
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=88.41 E-value=0.39 Score=32.18 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=19.8
Q ss_pred eeeeecCCCCC-eeeecCCCeecC
Q psy5280 57 TQEKLNPERPK-FEPYLPPGVPFH 79 (202)
Q Consensus 57 ~~~~~~~~~~~-~~~w~~~g~~~~ 79 (202)
..|++.|.|.+ .|.|+|+|.++.
T Consensus 18 l~C~a~G~P~P~~I~W~k~g~~l~ 41 (81)
T cd05749 18 LTCQAVGPPEPVEILWWQGGSPLG 41 (81)
T ss_pred EEEEeeeecCCeEEEEEECCEECC
Confidence 55889999988 699999998864
No 241
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=88.27 E-value=0.4 Score=30.94 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=20.7
Q ss_pred eeeeeecCCCCCeeeecCCCeecCC
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~~p 80 (202)
...|.+.+.|.+.+.|+++|.++..
T Consensus 5 ~l~C~~~g~P~p~i~W~~~g~~~~~ 29 (76)
T cd04978 5 RLDCEAEGIPQPTITWRLNGVPIEE 29 (76)
T ss_pred EEEEEceeeCCCEEEEEECCEECCC
Confidence 3568888999999999999988654
No 242
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=87.84 E-value=0.51 Score=32.14 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=21.2
Q ss_pred eeeeeecCCCCCeeeecCCCeecCC
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~~p 80 (202)
...|.+.+.|.+.+.|+|+|..+..
T Consensus 18 ~l~C~v~g~P~p~i~W~k~g~~l~~ 42 (95)
T cd05722 18 VLNCSAEGEPPPKIEWKKDGVLLNL 42 (95)
T ss_pred EEeeecccCCCCEEEEEECCeECcc
Confidence 4568899999999999999988754
No 243
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=87.01 E-value=0.48 Score=31.21 Aligned_cols=22 Identities=9% Similarity=-0.032 Sum_probs=19.5
Q ss_pred eeeeecCCCCCeeeecCCCeec
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPF 78 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~ 78 (202)
..|.+.|.|.+.+.|+++|.++
T Consensus 3 l~C~~~G~P~P~v~W~k~g~~~ 24 (77)
T cd05875 3 IECEAKGNPVPTFQWTRNGKFF 24 (77)
T ss_pred EEEeccccCCCEEEEEECCEEc
Confidence 4688999999999999999875
No 244
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=86.63 E-value=0.56 Score=30.22 Aligned_cols=26 Identities=4% Similarity=-0.133 Sum_probs=21.0
Q ss_pred eeeeecCCCCCeeeecCCCeecCCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPDK 82 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~~ 82 (202)
..|.+.+.|.+.+.|+++|..+.++.
T Consensus 6 L~C~~~g~P~p~v~W~k~~~~~~~~~ 31 (73)
T cd04969 6 IECKPKAAPKPTISWSKGTELLTNSS 31 (73)
T ss_pred EEEeeeEcCCCEEEEEECCEEcccCC
Confidence 55888888989999999998876543
No 245
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=86.34 E-value=0.79 Score=30.65 Aligned_cols=24 Identities=0% Similarity=-0.307 Sum_probs=19.1
Q ss_pred eeeeecCCCCCeeeecCCCeecCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p 80 (202)
..|.+.+.+.+.+.|+++|..+.+
T Consensus 21 l~C~~~g~P~p~v~W~k~~~~~~~ 44 (88)
T cd04968 21 LECFALGNPVPQIKWRKVDGSMPS 44 (88)
T ss_pred EEEEeeEeCCCEEEEEECCCcCCC
Confidence 558888999899999999866433
No 246
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=86.28 E-value=0.96 Score=30.51 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=23.0
Q ss_pred eeeeeecCCCCCeeeecCCCeecCCCCc
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPFHPDKS 83 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~~p~~~ 83 (202)
...|.+.|.+++.+.|+++|..+.++.+
T Consensus 5 ~l~C~~~g~p~~~i~W~k~~~~i~~~~~ 32 (88)
T cd05735 5 EMSCTAHGEKPIIVRWEKEDRIINPEMS 32 (88)
T ss_pred EEEEEEECCCCCEEEEeeCCEECCCCCC
Confidence 4679999999999999999988766433
No 247
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=86.25 E-value=0.73 Score=30.53 Aligned_cols=39 Identities=8% Similarity=-0.078 Sum_probs=22.5
Q ss_pred eeeeecCCCC-CeeeecCCCeecCCCCceeeeccccccCCC
Q psy5280 57 TQEKLNPERP-KFEPYLPPGVPFHPDKSFYFPRDFDLERPP 96 (202)
Q Consensus 57 ~~~~~~~~~~-~~~~w~~~g~~~~p~~~~~~~~~~~ie~~~ 96 (202)
..|.+.+.+. ..+.|++||..+......|..... .++.|
T Consensus 20 L~C~~~~~p~~~~~~W~kng~~l~~~~~~l~i~~~-~~dsG 59 (78)
T cd05752 20 LTCNGFNSPEQNSTQWYHNGKLLETTTNSYRIRAA-NNDSG 59 (78)
T ss_pred EEEeCCCCCCCccEEEEECCEEeeccCCeEEEeec-ccCCE
Confidence 4576666654 468999999886333333333333 44433
No 248
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=86.14 E-value=0.79 Score=30.14 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=18.0
Q ss_pred eeeeecCCCCCeeeecCCCeecCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
..|.+.+. .+.+.|+|+|.++.++
T Consensus 14 l~C~~~~~-~~~v~W~k~g~~l~~~ 37 (79)
T cd04973 14 LRCRLRDD-VQSINWTKDGVQLGEN 37 (79)
T ss_pred EEEEecCC-CceEEEeeCCcCCCCC
Confidence 45777776 4578999999887653
No 249
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=85.76 E-value=3.6 Score=36.02 Aligned_cols=82 Identities=17% Similarity=0.023 Sum_probs=52.6
Q ss_pred ccCCeeEEecCCeEEEEEEEEe---ecCCceEEEeCCEEccc-----------------CCcEEEEEe-----eCCeEEE
Q psy5280 109 QEHDTQYGIKNENSSLFWFVYG---YPKPKVSFYFNDELIEM-----------------GGRYDSSYT-----RNGQATL 163 (202)
Q Consensus 109 ~~~~~~~v~~G~~v~L~C~v~G---~P~P~i~W~k~g~~l~~-----------------~~r~~i~~~-----~~~~~~L 163 (202)
++.+...+..|..|.++|..+- .-...+.|+--|-++.+ .+.+.++-+ +...++|
T Consensus 269 k~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STL 348 (500)
T PHA02914 269 KKFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTL 348 (500)
T ss_pred cccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceE
Confidence 4445535556999999998764 23456789765433321 123333222 1234689
Q ss_pred EEccCCCCCCEEEEEEEEeCCceEEEE
Q psy5280 164 FINKMLDRDVGMYEALASNEHGTARQR 190 (202)
Q Consensus 164 ~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 190 (202)
.|.++..+..|.|+|.|....-+..+.
T Consensus 349 TIkka~I~N~GCY~~~a~~g~~~~ec~ 375 (500)
T PHA02914 349 TIKKAHINNAGCYEAQAFMGKFKEECR 375 (500)
T ss_pred EeeeEEEEcCCceEEEEecCcchhhhh
Confidence 999999999999999998765444333
No 250
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=85.64 E-value=0.87 Score=30.65 Aligned_cols=24 Identities=4% Similarity=-0.065 Sum_probs=20.7
Q ss_pred eeeeeecCCCCCeeeecCCCeecC
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPFH 79 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~~ 79 (202)
...|.+.|.|.+.+.|+++|..+.
T Consensus 19 ~l~C~~~G~P~p~v~W~~~g~~~~ 42 (90)
T cd04972 19 TIRCTAEGSPLPKVEWIIAGLIVI 42 (90)
T ss_pred EEEEEEEEcCCCeEEEEECCEEcc
Confidence 466999999999999999998754
No 251
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=85.46 E-value=0.67 Score=31.46 Aligned_cols=26 Identities=8% Similarity=0.017 Sum_probs=21.8
Q ss_pred eeeeeecCCCCCeeeecCCCeecCCC
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
...|.+.|.+.+.+.|+++|..+.+.
T Consensus 22 ~L~C~~~g~P~p~v~W~k~g~~~~~~ 47 (95)
T cd05730 22 TLACDADGFPEPTMTWTKDGEPIESG 47 (95)
T ss_pred EEEEeccEeCCCEEEEEECCEECcCC
Confidence 46688899999999999999887654
No 252
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=84.92 E-value=0.9 Score=29.18 Aligned_cols=25 Identities=4% Similarity=0.001 Sum_probs=21.0
Q ss_pred eeeeeecCCCCCeeeecCCCeecCC
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~~p 80 (202)
...|.+.|.|.+.+.|+|+|.++.+
T Consensus 5 ~L~C~a~G~P~P~v~W~k~g~~l~~ 29 (69)
T cd05739 5 NLTCVAVGAPMPYVKWMKGGEELTK 29 (69)
T ss_pred EEEEEeeecCCCEEEEEECCEECCC
Confidence 3568889999999999999988644
No 253
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=84.66 E-value=0.85 Score=28.92 Aligned_cols=22 Identities=5% Similarity=-0.127 Sum_probs=18.5
Q ss_pred eeeeecCCCCCeeeecCCCeec
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPF 78 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~ 78 (202)
..|.+.|.|.+.+.|++++..+
T Consensus 3 l~C~~~g~P~p~v~W~k~~~~~ 24 (69)
T cd05725 3 FQCEVGGDPVPTVLWRKEDGEL 24 (69)
T ss_pred EEEECccCCCCEEEEEECCccC
Confidence 4688899999999999998654
No 254
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=83.69 E-value=1.2 Score=30.15 Aligned_cols=25 Identities=4% Similarity=-0.092 Sum_probs=21.4
Q ss_pred eeeeecCCCCCeeeecCCCeecCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
..|.+.|.|.+.+.|+++|.++.+.
T Consensus 21 L~C~v~G~P~p~v~W~k~g~~l~~~ 45 (92)
T cd05737 21 LTCTVFGDPDPEVSWLKNDQALALS 45 (92)
T ss_pred EEEEEEecCCCeEEEEECCEECccC
Confidence 6688899999999999999887654
No 255
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=82.48 E-value=1.4 Score=29.22 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=19.1
Q ss_pred eeeeeecCCCCC--eeeecCCCeecCC
Q psy5280 56 DTQEKLNPERPK--FEPYLPPGVPFHP 80 (202)
Q Consensus 56 ~~~~~~~~~~~~--~~~w~~~g~~~~p 80 (202)
...|.+.+.|.+ .+.|+++|.++..
T Consensus 4 ~L~C~~~g~P~p~i~~~W~~~g~~i~~ 30 (85)
T cd04970 4 TLQCHASHDPTLDLTFTWSFNGVPIDF 30 (85)
T ss_pred EEEEEEecCCCCCeEEEEEECCeEeec
Confidence 457888888765 5789999988643
No 256
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=82.28 E-value=1.2 Score=30.47 Aligned_cols=24 Identities=0% Similarity=-0.172 Sum_probs=19.8
Q ss_pred eeeeeecCCCCCeeeecCCCeecC
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPFH 79 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~~ 79 (202)
...|.+.|.|.+.+.|+++|..+.
T Consensus 21 ~l~C~~~G~P~P~v~W~~~~~~~~ 44 (97)
T cd05869 21 TLTCEASGDPIPSITWRTSTRNIS 44 (97)
T ss_pred EEEEEeeEeCCCEEEEEECCcccc
Confidence 356888999999999999987654
No 257
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=82.16 E-value=1 Score=29.26 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=20.3
Q ss_pred eeeeeecCCCCCeeeecCCCeecCC
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~~p 80 (202)
...|.+.+.+.+.+.|+++|..+.+
T Consensus 13 ~L~C~~~g~p~p~i~W~k~~~~~~~ 37 (82)
T cd05856 13 RLKCVASGNPRPDITWLKDNKPLTP 37 (82)
T ss_pred EEEEEeeEeCCCcEEEEECCcCCcC
Confidence 4668888888888999999987644
No 258
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=81.50 E-value=1.2 Score=29.04 Aligned_cols=23 Identities=0% Similarity=-0.315 Sum_probs=19.4
Q ss_pred eeeeeecCCCCCeeeecCCCeec
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPF 78 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~ 78 (202)
...|.+.+.|.+.+.|++++..+
T Consensus 5 ~l~C~~~g~P~p~v~W~~~~~~~ 27 (78)
T cd05743 5 EFTCVATGVPTPIINWRLNWGHV 27 (78)
T ss_pred EEEEEEEEecCCEEEEEECCeEC
Confidence 45688899999999999998764
No 259
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=81.48 E-value=14 Score=25.17 Aligned_cols=62 Identities=6% Similarity=-0.008 Sum_probs=37.7
Q ss_pred EEecCCeEEEEEEEEe-----ecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEE
Q psy5280 115 YGIKNENSSLFWFVYG-----YPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEAL 179 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G-----~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~ 179 (202)
.+..|.+++..|.+.- .....|.|..++..+..+.+..+ ....+.+.+.+.....+-.|.|.
T Consensus 14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~i---n~~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVI---NDTVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEE---STTEEEEEESS--SSEEEEEEEE
T ss_pred EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHccee---CCeEEEEEEccCCCCCceEEEEE
Confidence 6778999999998862 24567999999986555443334 12235566666655554566665
No 260
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=81.39 E-value=1.6 Score=29.19 Aligned_cols=25 Identities=8% Similarity=-0.024 Sum_probs=19.5
Q ss_pred eeeeeecCCCCC--eeeecCCCeecCC
Q psy5280 56 DTQEKLNPERPK--FEPYLPPGVPFHP 80 (202)
Q Consensus 56 ~~~~~~~~~~~~--~~~w~~~g~~~~p 80 (202)
...|+++++|.+ .+.|+++|.++..
T Consensus 4 ~L~C~a~g~P~p~~~v~W~~~g~~i~~ 30 (85)
T cd05854 4 TLQCHASHDPTMDLTFTWSLDDFPIDL 30 (85)
T ss_pred EEEEEEecCCCCCeEEEEEECCeEccc
Confidence 467888888766 5799999988643
No 261
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=80.79 E-value=2.3 Score=28.50 Aligned_cols=24 Identities=0% Similarity=-0.197 Sum_probs=17.8
Q ss_pred eeeeec-CCCCCeeeecCCCeecCC
Q psy5280 57 TQEKLN-PERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 57 ~~~~~~-~~~~~~~~w~~~g~~~~p 80 (202)
+.|... +.|++.++|+++|.++..
T Consensus 4 L~C~s~~skP~a~i~W~k~~~~l~~ 28 (80)
T cd05885 4 LTCLSPRSKPAATLRWYRDRKELKG 28 (80)
T ss_pred EEEeCCCccCCCeEEEEECCEECCC
Confidence 345443 567889999999999744
No 262
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=80.47 E-value=1.3 Score=29.78 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=19.7
Q ss_pred eeeeeecCCCCCeeeecCC----CeecCCC
Q psy5280 56 DTQEKLNPERPKFEPYLPP----GVPFHPD 81 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~----g~~~~p~ 81 (202)
...|.+.+.|.+.+.|+++ |.++.++
T Consensus 5 ~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~ 34 (90)
T cd05858 5 EFVCKVYSDAQPHIQWLKHVEKNGSKYGPD 34 (90)
T ss_pred EEEEEEecCCCCEEEEEEecccCCcEeCCC
Confidence 3568999999999999984 5555443
No 263
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=79.66 E-value=2 Score=29.59 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=19.4
Q ss_pred eeeeeecCCC-CCeeeecC-CCeecCC
Q psy5280 56 DTQEKLNPER-PKFEPYLP-PGVPFHP 80 (202)
Q Consensus 56 ~~~~~~~~~~-~~~~~w~~-~g~~~~p 80 (202)
...|.+.|.| ++.+.|++ +|.++..
T Consensus 19 ~l~C~v~G~P~~p~i~W~~~~g~~l~~ 45 (96)
T cd05865 19 FFLCQVAGEAKDKDISWFSPNGEKLTP 45 (96)
T ss_pred EEEEEEeCCCCCCEEEEECCCCcCccc
Confidence 4668889998 46999998 8876554
No 264
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=79.20 E-value=1.4 Score=29.87 Aligned_cols=23 Identities=4% Similarity=-0.126 Sum_probs=18.0
Q ss_pred eeeeecC--CCCCeeeecCCCeecC
Q psy5280 57 TQEKLNP--ERPKFEPYLPPGVPFH 79 (202)
Q Consensus 57 ~~~~~~~--~~~~~~~w~~~g~~~~ 79 (202)
..|.++. .+...+.|++||.++.
T Consensus 5 l~C~v~~d~~l~~~~~W~~dg~~i~ 29 (85)
T cd05853 5 LPCQVSHDHSLDIVFTWSFNGHLID 29 (85)
T ss_pred EEEEeccCCCCCcEEEEEECCEECc
Confidence 4677765 5577899999999875
No 265
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=78.48 E-value=2.9 Score=28.12 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=17.0
Q ss_pred eeeeeecCCCCCeeeecCCC
Q psy5280 56 DTQEKLNPERPKFEPYLPPG 75 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g 75 (202)
...|++.+.|.+.+.|+|++
T Consensus 5 ~l~C~v~g~P~P~i~W~k~~ 24 (90)
T cd04974 5 EFHCKVYSDAQPHIQWLKHV 24 (90)
T ss_pred EEEEEEeCCCCCeEEEEEec
Confidence 35699999999999999953
No 266
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=76.98 E-value=8.6 Score=32.97 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=17.2
Q ss_pred eEEEEEEEEeecCC--ceEEEeC
Q psy5280 121 NSSLFWFVYGYPKP--KVSFYFN 141 (202)
Q Consensus 121 ~v~L~C~v~G~P~P--~i~W~k~ 141 (202)
.+.|.|.|.|.-+. .++|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999997554 4689999
No 267
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=76.11 E-value=3 Score=27.34 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=19.2
Q ss_pred eeeee-cCCCCCeeeecCCCeecCC
Q psy5280 57 TQEKL-NPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 57 ~~~~~-~~~~~~~~~w~~~g~~~~p 80 (202)
..|.+ .+.+.+.+.|+++|.++.+
T Consensus 16 l~C~~~~g~p~p~i~W~k~g~~~~~ 40 (86)
T cd05724 16 LECSPPRGHPEPTVSWRKDGQPLNL 40 (86)
T ss_pred EEEECCCCCCCCEEEEEECCEECCC
Confidence 55776 6788888999999988655
No 268
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=76.00 E-value=3.2 Score=28.19 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=19.6
Q ss_pred eeeeeecCCCCCeeeecCCCeecCC
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPFHP 80 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~~p 80 (202)
...|.+.+. .+.+.|+++|..+..
T Consensus 22 ~l~C~a~g~-~p~i~W~kng~~l~~ 45 (91)
T cd05740 22 TLTCEAEGQ-ATYIWWVNNGSLLVP 45 (91)
T ss_pred EEEEEeCCC-CCEEEEEECCEECCC
Confidence 466888998 889999999987543
No 269
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=75.42 E-value=16 Score=25.49 Aligned_cols=68 Identities=10% Similarity=0.047 Sum_probs=36.5
Q ss_pred CeEEEEEE-EEeecCCceEEEeC--CEE----cc-cCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEE
Q psy5280 120 ENSSLFWF-VYGYPKPKVSFYFN--DEL----IE-MGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191 (202)
Q Consensus 120 ~~v~L~C~-v~G~P~P~i~W~k~--g~~----l~-~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 191 (202)
+.+.-.|. +.|.|++.|+|.-+ |.. .. ....+.+ .+.+.+--....|.-..+|++....-....++
T Consensus 21 ~v~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV------~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~ 94 (98)
T cd05890 21 KMLVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTV------ISRYRLVPSREAHKQKLTCIVNYRNDRFTDSV 94 (98)
T ss_pred eEEEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEE------EEEEEEeECHHHcCCEeEEEEEeccccccccE
Confidence 34566787 68999999999753 221 00 0111222 12222233344555678999887644444444
Q ss_pred EE
Q psy5280 192 SS 193 (202)
Q Consensus 192 ~L 193 (202)
.|
T Consensus 95 ~L 96 (98)
T cd05890 95 TL 96 (98)
T ss_pred Ee
Confidence 44
No 270
>PHA03052 Hypothetical protein; Provisional
Probab=75.00 E-value=12 Score=24.32 Aligned_cols=32 Identities=16% Similarity=0.006 Sum_probs=25.3
Q ss_pred eEEecCCeEEEEEEEE-eec--CCceEEEeCCEEc
Q psy5280 114 QYGIKNENSSLFWFVY-GYP--KPKVSFYFNDELI 145 (202)
Q Consensus 114 ~~v~~G~~v~L~C~v~-G~P--~P~i~W~k~g~~l 145 (202)
..+.-|.++.+.|++. |.| .+.|.|.-|+..+
T Consensus 7 i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 7 IVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred EEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 3677899999999986 333 4578999998887
No 271
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=73.61 E-value=3.8 Score=27.57 Aligned_cols=23 Identities=4% Similarity=-0.122 Sum_probs=19.1
Q ss_pred eeeeeecCCCCCeeeecCCCeec
Q psy5280 56 DTQEKLNPERPKFEPYLPPGVPF 78 (202)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~g~~~ 78 (202)
...|.+.+.+.+.+.|+++|..+
T Consensus 20 ~l~C~~~g~p~p~v~W~~~~~~~ 42 (96)
T cd05732 20 TLTCEAEGDPIPEITWRRATRNF 42 (96)
T ss_pred EEEEEEeEcCCCcEEEEECCccc
Confidence 46688999999999999998654
No 272
>PHA03269 envelope glycoprotein C; Provisional
Probab=72.48 E-value=63 Score=29.29 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=25.4
Q ss_pred CCccCCeeeeccceeeeeecCCCCC---eeeecCCCeecCC
Q psy5280 43 GYAQAPRFLNQEHDTQEKLNPERPK---FEPYLPPGVPFHP 80 (202)
Q Consensus 43 ~~~~~p~f~~~~~~~~~~~~~~~~~---~~~w~~~g~~~~p 80 (202)
+....|...-+.....|.+.+.-++ -++|++||.++..
T Consensus 333 sV~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 333 TVIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred cccCCccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 3344465556666777888775433 5789999988764
No 273
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=70.64 E-value=3.8 Score=28.39 Aligned_cols=17 Identities=6% Similarity=-0.062 Sum_probs=12.7
Q ss_pred CCCCCeeeecCCCeecC
Q psy5280 63 PERPKFEPYLPPGVPFH 79 (202)
Q Consensus 63 ~~~~~~~~w~~~g~~~~ 79 (202)
....+.+.|+|+|.++.
T Consensus 26 ~~~~~~v~WYKd~~~l~ 42 (95)
T cd05897 26 NRTDVELQWYKDSVLLD 42 (95)
T ss_pred CCCCCcEEEccCCEECc
Confidence 34555789999998864
No 274
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=70.22 E-value=2.7 Score=29.26 Aligned_cols=22 Identities=9% Similarity=-0.221 Sum_probs=15.5
Q ss_pred eeeee-cCCCCCeeeecCCCeec
Q psy5280 57 TQEKL-NPERPKFEPYLPPGVPF 78 (202)
Q Consensus 57 ~~~~~-~~~~~~~~~w~~~g~~~ 78 (202)
..|.. .+.+.+.+.|++++.++
T Consensus 23 L~C~pP~g~P~p~~~W~k~~~~~ 45 (96)
T cd05727 23 LFCDPPPHYPDLSYRWLLNEFPN 45 (96)
T ss_pred EeeCCCCCCCCCEEEEEECCccc
Confidence 34543 45677899999998763
No 275
>KOG0613|consensus
Probab=69.70 E-value=3.1 Score=41.18 Aligned_cols=81 Identities=16% Similarity=0.001 Sum_probs=60.3
Q ss_pred EEecCCeEEEEEEEEeecCCc-eEEEeCCEEcccCC--cEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKPK-VSFYFNDELIEMGG--RYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~-i~W~k~g~~l~~~~--r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 191 (202)
....+..+.+.|...|.+.|. +.|++++.....+. .+.+ .+....+.+.|..+...+.+.|.|.|.|..|......
T Consensus 345 ~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~ 423 (1205)
T KOG0613|consen 345 TARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCP-VGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIA 423 (1205)
T ss_pred ccccCcceeecccccCCcCCchheeecccccccccccccccc-cccccCcchhhhhcCcccccccccceeccCCcccccc
Confidence 556678899999999999997 99999876655433 2222 1112345688899999999999999999999887665
Q ss_pred EEEee
Q psy5280 192 SSGNP 196 (202)
Q Consensus 192 ~L~V~ 196 (202)
...|.
T Consensus 424 ~~~vs 428 (1205)
T KOG0613|consen 424 ESTVS 428 (1205)
T ss_pred hhhcc
Confidence 54444
No 276
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=68.38 E-value=5.2 Score=26.98 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=28.2
Q ss_pred CCCCCCCcccCCCCCCCccCCeeeeccceeeeeecCCCCCeeeecCCCeec
Q psy5280 28 FYFPRDFDLERPPREGYAQAPRFLNQEHDTQEKLNPERPKFEPYLPPGVPF 78 (202)
Q Consensus 28 ~~~~~~~~~~r~~~~~~~~~p~f~~~~~~~~~~~~~~~~~~~~w~~~g~~~ 78 (202)
.-||.|.+. +...|.+- ..+.+..++.+... .+.|+.||..+
T Consensus 13 I~~P~~g~~-------~~~~~~~~-~~~~l~l~a~~~~~-~~~W~vdg~~~ 54 (89)
T PF06832_consen 13 ITSPPDGAV-------LALDPGIP-ERQPLVLKAAGGRG-PVYWFVDGEPL 54 (89)
T ss_pred EEecCCCCE-------EEeCCCCC-ccceEEEEEeCCCC-cEEEEECCEEc
Confidence 446777766 55555444 45566777777744 66899999987
No 277
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=66.83 E-value=6 Score=26.92 Aligned_cols=18 Identities=11% Similarity=-0.153 Sum_probs=15.3
Q ss_pred eeeeecCCCCCeeeecCC
Q psy5280 57 TQEKLNPERPKFEPYLPP 74 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~ 74 (202)
..|.+.|.|.+.+.|++.
T Consensus 21 l~C~~~G~P~p~i~W~k~ 38 (98)
T cd05870 21 LSCKAEGEPIPEITWKRA 38 (98)
T ss_pred EEEecccCCCCeEEEEEC
Confidence 558889999999999984
No 278
>PHA03270 envelope glycoprotein C; Provisional
Probab=65.76 E-value=77 Score=28.22 Aligned_cols=36 Identities=6% Similarity=-0.058 Sum_probs=23.8
Q ss_pred ccCCeeeeccceeeeeecCCCCC---eeeecCCCeecCC
Q psy5280 45 AQAPRFLNQEHDTQEKLNPERPK---FEPYLPPGVPFHP 80 (202)
Q Consensus 45 ~~~p~f~~~~~~~~~~~~~~~~~---~~~w~~~g~~~~p 80 (202)
...|...-+.....|.+.+.-++ -++|++||.++.+
T Consensus 227 ~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~ 265 (466)
T PHA03270 227 RPHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFA 265 (466)
T ss_pred cCCccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 33455555556666877765433 5789999998764
No 279
>PHA03273 envelope glycoprotein C; Provisional
Probab=62.94 E-value=1.1e+02 Score=27.43 Aligned_cols=35 Identities=6% Similarity=-0.048 Sum_probs=22.7
Q ss_pred cCCeeeeccceeeeeecCCCCC---eeeecCCCeecCC
Q psy5280 46 QAPRFLNQEHDTQEKLNPERPK---FEPYLPPGVPFHP 80 (202)
Q Consensus 46 ~~p~f~~~~~~~~~~~~~~~~~---~~~w~~~g~~~~p 80 (202)
..|...-+.....|.+.+.-|+ -++|++||.++.+
T Consensus 244 ~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~ 281 (486)
T PHA03273 244 VHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDF 281 (486)
T ss_pred CCccccCCCceEEEEeeeecCCCceEEEEEeCCeeccc
Confidence 3344444555566777664333 5789999999874
No 280
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=62.42 E-value=8.2 Score=26.05 Aligned_cols=25 Identities=0% Similarity=-0.193 Sum_probs=20.5
Q ss_pred eeeeecCCCCCeeeecCCCeecCCC
Q psy5280 57 TQEKLNPERPKFEPYLPPGVPFHPD 81 (202)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~g~~~~p~ 81 (202)
..|.+.+.+.+.+.|+++|..+..+
T Consensus 21 L~C~v~g~P~p~i~W~k~~~~~~~~ 45 (92)
T cd05891 21 LTCTVFGNPDPEVIWFKNDQDIELS 45 (92)
T ss_pred EEEEEEEeCCCeEEEEECCEECCCC
Confidence 6688888988899999999876543
No 281
>KOG1026|consensus
Probab=61.05 E-value=3.9 Score=38.78 Aligned_cols=71 Identities=11% Similarity=-0.047 Sum_probs=47.0
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSG 194 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~ 194 (202)
.+..|..+++.|.+.|.|.|.+.|+..+............ -......+. .++|.+.|..|.....+.+.
T Consensus 203 ~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~---c~~~~~~~~--------~~~c~~E~~~~~~~~~v~~~ 271 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSL---CRSECEVLE--------NDLCIAENAVARSNPSILLV 271 (774)
T ss_pred hhcccchheeeeecccCCCcceeeecccccccCCCccccc---ccccceeee--------chhhHHHHhhhhcCceeeeE
Confidence 5567889999999999999999999887665442211110 001111111 18999999999887666655
Q ss_pred ee
Q psy5280 195 NP 196 (202)
Q Consensus 195 V~ 196 (202)
+.
T Consensus 272 ~~ 273 (774)
T KOG1026|consen 272 VD 273 (774)
T ss_pred Ee
Confidence 44
No 282
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=57.81 E-value=97 Score=24.82 Aligned_cols=60 Identities=8% Similarity=0.023 Sum_probs=30.5
Q ss_pred EEEEEEEEeecCC--ceEEEeCCEEcccCCcEEE-EEeeCCeEEEEEccCCC--CCCE--EEEEEEE
Q psy5280 122 SSLFWFVYGYPKP--KVSFYFNDELIEMGGRYDS-SYTRNGQATLFINKMLD--RDVG--MYEALAS 181 (202)
Q Consensus 122 v~L~C~v~G~P~P--~i~W~k~g~~l~~~~r~~i-~~~~~~~~~L~I~~~~~--~D~G--~Y~C~a~ 181 (202)
-...|.+.-.|.. .+.|.-++........... ..-...-+...|.+... ...| +|+|...
T Consensus 92 g~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~ 158 (211)
T PF02124_consen 92 GYAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLI 158 (211)
T ss_pred CEEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEe
Confidence 3445888777754 6789987765422222111 00001123344444332 2335 8999875
No 283
>PHA03270 envelope glycoprotein C; Provisional
Probab=57.75 E-value=46 Score=29.58 Aligned_cols=33 Identities=6% Similarity=-0.009 Sum_probs=27.1
Q ss_pred EEecCCeEEEEEEEEeecCC---ceEEEeCCEEccc
Q psy5280 115 YGIKNENSSLFWFVYGYPKP---KVSFYFNDELIEM 147 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P---~i~W~k~g~~l~~ 147 (202)
-+++|+.-.-.|.+..+=+| .+.|+.|+..+..
T Consensus 230 PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~ 265 (466)
T PHA03270 230 AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFA 265 (466)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 45789999999999887555 4799999998864
No 284
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=55.71 E-value=12 Score=25.39 Aligned_cols=26 Identities=4% Similarity=-0.124 Sum_probs=20.8
Q ss_pred eeeeeecCCCCC-eeeecCCCeecCCC
Q psy5280 56 DTQEKLNPERPK-FEPYLPPGVPFHPD 81 (202)
Q Consensus 56 ~~~~~~~~~~~~-~~~w~~~g~~~~p~ 81 (202)
...|.+.|.|.+ .+.|.++|.++...
T Consensus 20 ~L~C~~~g~P~P~~v~W~~~~~~i~~~ 46 (98)
T cd05758 20 RVECFIFSTPPPDRIVWTWKENELESG 46 (98)
T ss_pred EEEEEEcccCCCCEeEEEECCEEccCC
Confidence 366888998887 69999999886553
No 285
>PHA03283 envelope glycoprotein E; Provisional
Probab=52.51 E-value=38 Score=30.82 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=32.9
Q ss_pred eEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEeec
Q psy5280 160 QATLFINKMLDRDVGMYEALASNEHGTARQRVSSGNPA 197 (202)
Q Consensus 160 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 197 (202)
...|.|.++..+++|.|+--..|..+.....+.|+|..
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 46799999999999999999999888667777788776
No 286
>PHA03189 UL14 tegument protein; Provisional
Probab=47.14 E-value=1.5e+02 Score=25.19 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=17.3
Q ss_pred cCCCCCCEEEEEEEEeCCceEE
Q psy5280 167 KMLDRDVGMYEALASNEHGTAR 188 (202)
Q Consensus 167 ~~~~~D~G~Y~C~a~N~~G~~~ 188 (202)
++..+-+|.|.|+..|......
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv 160 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLV 160 (348)
T ss_pred EEEecccceEEEEeccccceee
Confidence 5666788999999999876543
No 287
>PHA03286 envelope glycoprotein E; Provisional
Probab=46.26 E-value=51 Score=29.48 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=32.3
Q ss_pred eEEEEEccCCCCCCEEEEEEEEeCCceEEEE-EEEEeecCCC
Q psy5280 160 QATLFINKMLDRDVGMYEALASNEHGTARQR-VSSGNPAQGS 200 (202)
Q Consensus 160 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~-~~L~V~~~~~ 200 (202)
...|.|.++..+.+|.|+--..|..|....+ +.|.|.+++.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~ 167 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGR 167 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCC
Confidence 4679999999999999999999998876544 5666655543
No 288
>KOG0613|consensus
Probab=45.70 E-value=6.7 Score=38.95 Aligned_cols=66 Identities=23% Similarity=0.104 Sum_probs=39.7
Q ss_pred CeEEEEEEEEeecCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCce
Q psy5280 120 ENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGT 186 (202)
Q Consensus 120 ~~v~L~C~v~G~P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 186 (202)
++.++--...|.|.|.+.|+.+|..+..++...+.... ....+.|......+.|.|.-...|.+|.
T Consensus 205 e~~v~~v~s~gqp~~~~~~~~~g~~i~~~~~~~~s~t~-e~s~~~i~~~l~~~~G~~~~~~~~~l~e 270 (1205)
T KOG0613|consen 205 ESRVRAVVSAGQPEPLERWEILGELIAPGSAPSMSVTL-EASDRKIQLTLRAPRGPYSAHILGYLIE 270 (1205)
T ss_pred ceeEEEEEecCCCccchhhhhcccccCCCCcccccccc-chhheeeeEEeecCCCchHHHHhcchhh
Confidence 44444434568999999999999998877666553221 2334555555555555555444444443
No 289
>COG3878 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.13 E-value=20 Score=29.30 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCcccCCCCCCCccCCeeeeccc
Q psy5280 24 PDKSFYFPRDFDLERPPREGYAQAPRFLNQEH 55 (202)
Q Consensus 24 ~~~~~~~~~~~~~~r~~~~~~~~~p~f~~~~~ 55 (202)
-.+++|+||+.+| |-+...++..||.|..
T Consensus 38 iGG~pYlpk~e~y---P~de~g~Pl~fLAQIN 66 (261)
T COG3878 38 IGGRPYLPKFETY---PLDENGVPLVFLAQIN 66 (261)
T ss_pred cCCCccccccccc---CccCCCCceeeeeecC
Confidence 3689999999999 6666667788887754
No 290
>PHA03271 envelope glycoprotein C; Provisional
Probab=41.18 E-value=1e+02 Score=27.41 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=27.0
Q ss_pred EEecCCeEEEEEEEEeecCC---ceEEEeCCEEccc
Q psy5280 115 YGIKNENSSLFWFVYGYPKP---KVSFYFNDELIEM 147 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P---~i~W~k~g~~l~~ 147 (202)
.+++|+.-.-.|.+..+=+| .+.|+.||..+..
T Consensus 256 PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~ 291 (490)
T PHA03271 256 PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATP 291 (490)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 45789999999999987555 4799999988764
No 291
>PHA03240 envelope glycoprotein M; Provisional
Probab=40.62 E-value=52 Score=26.47 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=27.0
Q ss_pred CCeEEEEEccCCCCCCEEEEEEEEeCCceE----EEEEEEEe
Q psy5280 158 NGQATLFINKMLDRDVGMYEALASNEHGTA----RQRVSSGN 195 (202)
Q Consensus 158 ~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~----~~~~~L~V 195 (202)
-.+++|.|.++..+|.|+|.-.-....|.. .+...|.|
T Consensus 102 C~NstL~i~~vn~sd~~nYcr~k~~~~g~~e~pt~sC~~l~~ 143 (258)
T PHA03240 102 CHNSTLIIAHLNLSDAGEYCRKKCPPKGDCEFPTMSCFRLIL 143 (258)
T ss_pred eccceEEEEEEeecCcchhhhccCCCCCCcCCCcceeeeEee
Confidence 356899999999999999976655566654 12345555
No 292
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=40.59 E-value=22 Score=16.83 Aligned_cols=13 Identities=54% Similarity=1.035 Sum_probs=9.7
Q ss_pred CCCCCCCCCcccc
Q psy5280 2 REKLNPERPKFEP 14 (202)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (202)
.-||+|.-+.|+|
T Consensus 3 ~s~LNp~A~eFvP 15 (18)
T PF07145_consen 3 SSKLNPNAPEFVP 15 (18)
T ss_dssp SSSSSTTSSSS-T
T ss_pred ccccCCCCccccC
Confidence 4688999888886
No 293
>PHA03269 envelope glycoprotein C; Provisional
Probab=40.07 E-value=96 Score=28.16 Aligned_cols=33 Identities=18% Similarity=0.040 Sum_probs=27.4
Q ss_pred EEecCCeEEEEEEEEeecCC---ceEEEeCCEEccc
Q psy5280 115 YGIKNENSSLFWFVYGYPKP---KVSFYFNDELIEM 147 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P---~i~W~k~g~~l~~ 147 (202)
-+++|+.-.-.|.+..+=+| .+.|+.|+..+..
T Consensus 338 PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 338 PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 46789999999999887555 4799999988874
No 294
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=37.47 E-value=93 Score=19.85 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=14.6
Q ss_pred EecCCeEEEEEEEEeecCCceEEEe
Q psy5280 116 GIKNENSSLFWFVYGYPKPKVSFYF 140 (202)
Q Consensus 116 v~~G~~v~L~C~v~G~P~P~i~W~k 140 (202)
+..|.+++| .|-+...|+|++
T Consensus 2 v~~G~N~TL----~Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTL----VGPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEE----eCCCCCceEEEE
Confidence 456788777 455556799984
No 295
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=36.95 E-value=1.1e+02 Score=19.39 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=33.9
Q ss_pred cCCeEEEEEEEEee-cCCceEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEE--EEEEeCCceEEEEEEEE
Q psy5280 118 KNENSSLFWFVYGY-PKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYE--ALASNEHGTARQRVSSG 194 (202)
Q Consensus 118 ~G~~v~L~C~v~G~-P~P~i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~--C~a~N~~G~~~~~~~L~ 194 (202)
.++.+.|.+...+. ......|...+........... .-...|.|. ..+.|..|+......+.
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~~~~~~---------------~y~~~G~y~v~l~v~n~~g~~~~~~~i~ 77 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDGTSSTGPTVTH---------------TYTKPGTYTVTLTVTNAVGSASATVTVV 77 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCCCccCCCCEEE---------------EeCCCcEEEEEEEEEcCCCcEEEEEEEE
Confidence 57888888876652 2345677654332111111111 122456664 45678888666666655
Q ss_pred e
Q psy5280 195 N 195 (202)
Q Consensus 195 V 195 (202)
|
T Consensus 78 v 78 (79)
T smart00089 78 V 78 (79)
T ss_pred E
Confidence 4
No 296
>PHA03376 BARF1; Provisional
Probab=34.66 E-value=28 Score=27.64 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=19.7
Q ss_pred CCeEEEEEEEEeecCCceEEEeCC
Q psy5280 119 NENSSLFWFVYGYPKPKVSFYFND 142 (202)
Q Consensus 119 G~~v~L~C~v~G~P~P~i~W~k~g 142 (202)
-...++.|.+.|.|.|.++|.-+.
T Consensus 139 ~~~~~i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 139 FSVLTVTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred CCeeEEEEecCCcCCchheecccc
Confidence 345688999889999999998654
No 297
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=31.07 E-value=1.7e+02 Score=26.24 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=17.7
Q ss_pred CeEEEEEccCCCCCCEEEEEEEEe
Q psy5280 159 GQATLFINKMLDRDVGMYEALASN 182 (202)
Q Consensus 159 ~~~~L~I~~~~~~D~G~Y~C~a~N 182 (202)
+.-.|++.++...++|.|.|++.-
T Consensus 267 ~~~~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 267 NGVDLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp TSSSEEESS--GGG-EEEEEEEEE
T ss_pred CCcceEecCCCcccCceEEEEEEE
Confidence 345699999999999999999874
No 298
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=30.91 E-value=1.4e+02 Score=18.59 Aligned_cols=28 Identities=14% Similarity=0.031 Sum_probs=17.6
Q ss_pred EEecCCeEEEEEEEEeecCCceEEEeCC
Q psy5280 115 YGIKNENSSLFWFVYGYPKPKVSFYFND 142 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P~i~W~k~g 142 (202)
.+..|+.+.|.........-...|..++
T Consensus 7 ~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 7 YVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp CEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred EEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 4567899999887622122356788777
No 299
>PHA03282 envelope glycoprotein E; Provisional
Probab=30.12 E-value=89 Score=28.19 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.4
Q ss_pred eEEEEEccCCCCCCEEEEEEEE
Q psy5280 160 QATLFINKMLDRDVGMYEALAS 181 (202)
Q Consensus 160 ~~~L~I~~~~~~D~G~Y~C~a~ 181 (202)
+.+|.|.++..+|+|.|+..+.
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~ 144 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVS 144 (540)
T ss_pred cceEEEeeccccCCceEEEEec
Confidence 5679999999999999999863
No 300
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=29.14 E-value=1.6e+02 Score=22.51 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=25.4
Q ss_pred eEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy5280 160 QATLFINKMLDRDVGMYEALASNEHGTARQRVSSG 194 (202)
Q Consensus 160 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~ 194 (202)
.-.|.|.+...+|+|.|...++-.-.+...-+.+.
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~ 157 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLS 157 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECCCCCCcEEEEe
Confidence 45699999999999999998876544444334433
No 301
>PHA03281 envelope glycoprotein E; Provisional
Probab=27.58 E-value=1.5e+02 Score=27.42 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=30.6
Q ss_pred eEEEEEccCCCCCCEEEEEEEEeCCce-EEEEEEEEeecCC
Q psy5280 160 QATLFINKMLDRDVGMYEALASNEHGT-ARQRVSSGNPAQG 199 (202)
Q Consensus 160 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~~~ 199 (202)
.+.|.|.++....+|.|+--.....|. ..+.+.|+|..+.
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~ 337 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDE 337 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCc
Confidence 357999999999999999888877664 3446677776544
No 302
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=26.44 E-value=1.8e+02 Score=18.50 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=35.2
Q ss_pred eEEEeCCEEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEe
Q psy5280 136 VSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGN 195 (202)
Q Consensus 136 i~W~k~g~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 195 (202)
..|+++++.+.. +.+......-.+-.-..+.....|...+.+....|..-....+.|
T Consensus 9 H~W~~~g~~~~~---i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 9 HRWYKNGKLVAR---IPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEECCEEEEE---EEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 479999987643 111111111222223334447889999999999998877777665
No 303
>PHA03273 envelope glycoprotein C; Provisional
Probab=23.53 E-value=2.9e+02 Score=24.98 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=27.2
Q ss_pred EEecCCeEEEEEEEEeecCC---ceEEEeCCEEcc
Q psy5280 115 YGIKNENSSLFWFVYGYPKP---KVSFYFNDELIE 146 (202)
Q Consensus 115 ~v~~G~~v~L~C~v~G~P~P---~i~W~k~g~~l~ 146 (202)
.+++|+.-.-.|.+..+=+| .+.|+.|+..+.
T Consensus 246 PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~ 280 (486)
T PHA03273 246 PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD 280 (486)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence 56789999999999887555 579999999887
No 304
>PHA03291 envelope glycoprotein I; Provisional
Probab=23.45 E-value=2.5e+02 Score=24.47 Aligned_cols=38 Identities=21% Similarity=0.079 Sum_probs=28.5
Q ss_pred CeEEEEEccCCCCCCEEEEEEEEeCCceEEEEEEEEee
Q psy5280 159 GQATLFINKMLDRDVGMYEALASNEHGTARQRVSSGNP 196 (202)
Q Consensus 159 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 196 (202)
.+-.|.|.+....|+|.|...++-.......-+.|.+.
T Consensus 127 ~~vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~ 164 (401)
T PHA03291 127 RQPLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLA 164 (401)
T ss_pred cceEEEecCCCcccceeEEEEEEeCCCcccceEEEeee
Confidence 34578999999999999999988765555445555544
No 305
>KOG3611|consensus
Probab=22.37 E-value=1.4e+02 Score=28.61 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=36.2
Q ss_pred eEEEEEEEEeecCCceEEEeC--C----EEcccCCcEEEEEeeCCeEEEEEccCCCCCCEEEEEEEEeCC
Q psy5280 121 NSSLFWFVYGYPKPKVSFYFN--D----ELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEH 184 (202)
Q Consensus 121 ~v~L~C~v~G~P~P~i~W~k~--g----~~l~~~~r~~i~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 184 (202)
...|.|...+.-.+ +.|+.. + ..+....+... ...+.+.+..+...|.|.|.|.+.+..
T Consensus 571 ~~~l~c~~~~~~a~-~~w~~~~~~~~~~~~~~~~~~~~~----~~~G~lll~~~q~~~~G~y~c~~~e~~ 635 (737)
T KOG3611|consen 571 SEVLRCVPSSNQAP-VVWYHQSTKDGRKEEVRQRDVVSR----TDEGGLVLLSVQKLDGGTYPCYADESS 635 (737)
T ss_pred cceeeccccccccc-eeeEeeccCccccceeccCcceee----cccCceeEEEEeeccCcccccccccCc
Confidence 35677766554444 778632 1 12233333333 233457788899999999999988653
No 306
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.25 E-value=32 Score=30.74 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=0.0
Q ss_pred eEEEEEccCCCCCCEEEEEEEEeCCceEEE-EEEEEeecCC
Q psy5280 160 QATLFINKMLDRDVGMYEALASNEHGTARQ-RVSSGNPAQG 199 (202)
Q Consensus 160 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~L~V~~~~ 199 (202)
.+.|.|.++..+|+|.|+-...|.-|.... .+.|.|..+.
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~ 128 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPA 128 (439)
T ss_dssp -----------------------------------------
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCC
Confidence 467999999999999999999887776533 3455555443
No 307
>COG5475 Uncharacterized small protein [Function unknown]
Probab=20.31 E-value=2.3e+02 Score=17.64 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=18.8
Q ss_pred EEEEccCCCCCCEEEEEEEEeCCceEEEEE
Q psy5280 162 TLFINKMLDRDVGMYEALASNEHGTARQRV 191 (202)
Q Consensus 162 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 191 (202)
.++|+.... .|.|.|..-+..|.....+
T Consensus 19 ~Mtvs~~ss--~Gmy~C~Wf~g~g~~~~~F 46 (60)
T COG5475 19 RMTVSGYSS--DGMYECRWFDGYGVKREAF 46 (60)
T ss_pred eEEEecccc--CCeEEEEEecCCCcccccc
Confidence 344444443 2999999999999655443
No 308
>PHA03271 envelope glycoprotein C; Provisional
Probab=20.21 E-value=1.1e+02 Score=27.19 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=34.6
Q ss_pred ccCCCCCCCccCCeeeeccceeeeeecCCCCC---eeeecCCCeecCC
Q psy5280 36 LERPPREGYAQAPRFLNQEHDTQEKLNPERPK---FEPYLPPGVPFHP 80 (202)
Q Consensus 36 ~~r~~~~~~~~~p~f~~~~~~~~~~~~~~~~~---~~~w~~~g~~~~p 80 (202)
..||+..+....|...-+.....|.+.+.-|+ -++|+.||.++.+
T Consensus 244 ~~RPPsVsV~a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~ 291 (490)
T PHA03271 244 CQRPASVDVLAPPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATP 291 (490)
T ss_pred EecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 35777777777787778888888988875444 4889999998765
No 309
>PHA03282 envelope glycoprotein E; Provisional
Probab=20.02 E-value=2.2e+02 Score=25.84 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=20.1
Q ss_pred eEEEEEccCCCCCCEEEEEEEEe
Q psy5280 160 QATLFINKMLDRDVGMYEALASN 182 (202)
Q Consensus 160 ~~~L~I~~~~~~D~G~Y~C~a~N 182 (202)
+-.|++.++...++|.|.|+..-
T Consensus 332 ~VdL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 332 TVNLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred ccceEecCCCcccCceEEEEEEE
Confidence 34799999999999999999874
Done!