RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5280
(202 letters)
>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain.
Length = 90
Score = 47.6 bits (114), Expect = 9e-08
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V G P P VS++ + + + R+ +Y G TL I+ + D G Y +A+N G A
Sbjct: 24 VTGDPDPTVSWFKDGQPLRSSDRFKVTY-EGGTYTLTISNVQPDDEGKYTCVATNSAGEA 82
Query: 188 RQRVS 192
Sbjct: 83 EASAE 87
>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain. Ig: immunoglobulin (Ig) domain
found in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
this group are components of immunoglobulin, neuroglia,
cell surface glycoproteins, such as, T-cell receptors,
CD2, CD4, CD8, and membrane glycoproteins, such as,
butyrophilin and chondroitin sulfate proteoglycan core
protein. A predominant feature of most Ig domains is a
disulfide bridge connecting the two beta-sheets with a
tryptophan residue packed against the disulfide bond.
Length = 74
Score = 41.7 bits (97), Expect = 1e-05
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 128 VYGYPKPKVSFYFNDELI---EMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEH 184
G P P +++ N + + + S T +G +TL I+ + D G Y +ASN
Sbjct: 7 ASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66
Query: 185 GTARQRVS 192
GT V+
Sbjct: 67 GTVSASVT 74
>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin.
Ig5_Contactin_like: Fifth Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four fibronectin
type III(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. The first four Ig domains
form the intermolecular binding fragment, which arranges
as a compact U-shaped module via contacts between Ig
domains 1 and 4, and between Ig domains 2 and 3.
Contactin-2 (TAG-1, axonin-1) may play a part in the
neuronal processes of neurite outgrowth, axon guidance
and fasciculation, and neuronal migration. This group
also includes contactin-1 and contactin-5. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-5
is expressed specifically in the rat postnatal nervous
system, peaking at about 3 weeks postnatal, and a lack
of contactin-5 (NB-2) results in an impairment of
neuronal act ivity in the rat auditory system.
Contactin-5 is highly expressed in the adult human brain
in the occipital lobe and in the amygdala. Contactin-1
is differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 73
Score = 41.7 bits (98), Expect = 1e-05
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
PKP +S+ EL+ R +G +L I + D G Y A N G A
Sbjct: 12 AAPKPTISWSKGTELLTNSSRI--CIWPDG--SLEILNVTKSDEGKYTCFAENFFGKA 65
>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like. IG domains that cannot
be classified into one of IGv1, IGc1, IGc2, IG.
Length = 85
Score = 40.2 bits (94), Expect = 5e-05
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 128 VYGYPKPKVSFYFND-ELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGT 186
G P P+V++Y +L+ GR+ S + +TL I+ + D G Y A+N G+
Sbjct: 18 ASGSPPPEVTWYKQGGKLLAESGRFSVSRS-GSTSTLTISNVTPEDSGTYTCAATNSSGS 76
Query: 187 ARQRV 191
A
Sbjct: 77 ASSGT 81
>gnl|CDD|214652 smart00409, IG, Immunoglobulin.
Length = 85
Score = 40.2 bits (94), Expect = 5e-05
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 128 VYGYPKPKVSFYFND-ELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGT 186
G P P+V++Y +L+ GR+ S + +TL I+ + D G Y A+N G+
Sbjct: 18 ASGSPPPEVTWYKQGGKLLAESGRFSVSRS-GSTSTLTISNVTPEDSGTYTCAATNSSGS 76
Query: 187 ARQRV 191
A
Sbjct: 77 ASSGT 81
>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell
adhesion molecule contactin-2 and similar proteins.
Ig4_Contactin-2-like: fourth Ig domain of the neural
cell adhesion molecule contactin-2. Contactins are
comprised of six Ig domains followed by four fibronectin
type III (FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-2 (aliases
TAG-1, axonin-1) facilitates cell adhesion by homophilic
binding between molecules in apposed membranes. The
first four Ig domains form the intermolecular binding
fragment which arranges as a compact U-shaped module by
contacts between Ig domains 1 and 4, and domains 2 and
3. It has been proposed that a linear zipper-like array
forms, from contactin-2 molecules alternatively provided
by the two apposed membranes.
Length = 85
Score = 39.1 bits (91), Expect = 1e-04
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 122 SSLFW--FVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEAL 179
SSL W G P+P + N + + R G L I K+ D GMY+ +
Sbjct: 15 SSLRWECKASGNPRPAYRWLKNGQPLASENRI---EVEAG--DLRITKLSLSDSGMYQCV 69
Query: 180 ASNEHGT 186
A N+HGT
Sbjct: 70 AENKHGT 76
>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like
domain of myomesin and M-protein. Ig_Myomesin_like_C:
domain similar to the C-temrinal immunoglobulin
(Ig)-like domain of myomesin and M-protein. Myomesin and
M-protein are both structural proteins localized to the
M-band, a transverse structure in the center of the
sarcomere, and are candidates for M-band bridges. Both
proteins are modular, consisting mainly of repetitive
Ig-like and fibronectin type III (FnIII) domains.
Myomesin is expressed in all types of vertebrate
striated muscle; M-protein has a muscle-type specific
expression pattern. Myomesin is present in both slow and
fast fibers; M-protein is present only in fast fibers.
It has been suggested that myomesin acts as a molecular
spring with alternative splicing as a means of modifying
its elasticity.
Length = 92
Score = 37.5 bits (87), Expect = 5e-04
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185
V+G P P+VS+ ND+ + + Y+ + A+L I + D G Y + N++G
Sbjct: 25 VFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82
>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain
of M-protein (also known as myomesin-2).
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like
domain of M-protein (also known as myomesin-2).
M-protein is a structural protein localized to the
M-band, a transverse structure in the center of the
sarcomere, and is a candidate for M-band bridges.
M-protein is modular consisting mainly of repetitive
IG-like and fibronectin type III (FnIII) domains, and
has a muscle-type specific expression pattern. M-protein
is present in fast fibers.
Length = 92
Score = 36.8 bits (85), Expect = 0.001
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185
V+G P P+V ++ ND+ IE+ Y + A+L I + D G Y N++G
Sbjct: 25 VFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYG 82
>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type.
Length = 63
Score = 34.7 bits (80), Expect = 0.003
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185
G P P +++ + + + R+ +S +TL I + D G+Y +A N G
Sbjct: 13 GNPVPNITWLKDGKPLPESNRFVAS-----GSTLTIKSVSLEDSGLYTCVAENSAG 63
>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain
of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule),
and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth
immunoglobulin (Ig)-like domain of L1, Ng-CAM
(Neuron-glia CAM cell adhesion molecule), and NrCAM
(Ng-CAM-related). These proteins belong to the L1
subfamily of cell adhesion molecules (CAMs) and are
comprised of an extracellular region having six Ig-like
domains and five fibronectin type III domains, a
transmembrane region and an intracellular domain. These
molecules are primarily expressed in the nervous system.
L1 is associated with an X-linked recessive disorder,
X-linked hydrocephalus, MASA syndrome, or spastic
paraplegia type 1, that involves abnormalities of axonal
growth.
Length = 76
Score = 34.3 bits (79), Expect = 0.006
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 120 ENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEAL 179
E L G P+P +++ N IE D +G + N D +Y+
Sbjct: 2 ETGRLDCEAEGIPQPTITWRLNGVPIEELPP-DPRRRVDGGTLILSNVQ-PNDTAVYQCN 59
Query: 180 ASNEHGTA 187
ASN HG
Sbjct: 60 ASNVHGYL 67
>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin
and similar proteins. Ig_Titin_like: immunoglobulin
(Ig)-like domain found in titin-like proteins. Titin
(also called connectin) is a fibrous sarcomeric protein
specifically found in vertebrate striated muscle. Titin
is gigantic, depending on isoform composition it ranges
from 2970 to 3700 kDa, and is of a length that spans
half a sarcomere. Titin largely consists of multiple
repeats of Ig-like and fibronectin type 3 (FN-III)-like
domains. Titin connects the ends of myosin thick
filaments to Z disks and extends along the thick
filament to the H zone. It appears to function
similarly to an elastic band, keeping the myosin
filaments centered in the sarcomere during muscle
contraction or stretching. Within the sarcomere, titin
is also attached to or is associated with myosin binding
protein C (MyBP-C). MyBP-C appears to contribute to the
generation of passive tension by titin, and similar to
titin has repeated Ig-like and FN-III domains. Also
included in this group are worm twitchin and insect
projectin, thick filament proteins of invertebrate
muscle, which also have repeated Ig-like and FN-III
domains.
Length = 74
Score = 33.3 bits (77), Expect = 0.011
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDR-DVGMYEALASNEHGT 186
+ G P P V++ + + +++ GR T + +T + K +R D G Y N G
Sbjct: 8 ISGRPTPTVTWSKDGKPLKLSGRVQIETTAS--STSLVIKNAERSDSGKYTLTLKNPAGE 65
Query: 187 A 187
Sbjct: 66 K 66
>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM
(NgCAM-related cell adhesion molecule). Ig4_ NrCAM:
fourth immunoglobulin (Ig)-like domain of NrCAM
(NgCAM-related cell adhesion molecule). NrCAM belongs to
the L1 subfamily of cell adhesion molecules (CAMs) and
is comprised of an extracellular region having six
IG-like domains and five fibronectin type III domains, a
transmembrane region and an intracellular domain. NrCAM
is primarily expressed in the nervous system.
Length = 76
Score = 33.0 bits (75), Expect = 0.014
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 120 ENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEAL 179
E+ +L G PKP +S+ N IE+ D S +G +F +K+ +R +Y+
Sbjct: 2 EDGTLICRANGNPKPSISWLTNGVPIEIAPT-DPSRKVDGDTIIF-SKVQERSSAVYQCN 59
Query: 180 ASNEHG 185
ASNE+G
Sbjct: 60 ASNEYG 65
>gnl|CDD|143272 cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 2 (VEGFR-2).
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor 2 (VEGFR-2).
The VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. VEGFRs bind VEGFs with high
affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is
a major mediator of the mitogenic, angiogenic and
microvascular permeability-enhancing effects of VEGF-A;
VEGF-A is important to the growth and maintenance of
vascular endothelial cells and to the development of new
blood- and lymphatic-vessels in physiological and
pathological states. VEGF-A also interacts with VEGFR-1,
which it binds more strongly than VEGFR-2. VEGFR-2 and
-1 may mediate a chemotactic and a survival signal in
hematopoietic stem cells or leukemia cells.
Length = 70
Score = 32.6 bits (74), Expect = 0.021
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 129 YGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTAR 188
YGYP P+V +Y N +LI + + L I ++ ++D G Y + +N
Sbjct: 8 YGYPPPEVKWYKNGQLIVLNHTFKRGV------HLTIYEVTEKDAGNYTVVLTNPITKEE 61
Query: 189 QR 190
QR
Sbjct: 62 QR 63
>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor. Ig2_FGFR:
second immunoglobulin (Ig)-like domain of fibroblast
growth factor (FGF) receptor. FGF receptors bind FGF
signaling polypeptides. FGFs participate in multiple
processes such as morphogenesis, development, and
angiogenesis. FGFs bind to four FGF receptor tyrosine
kinases (FGFR1, -2, -3, -4). Receptor diversity is
controlled by alternative splicing producing splice
variants with different ligand binding characteristics
and different expression patterns. FGFRs have an
extracellular region comprised of three IG-like domains,
a single transmembrane helix, and an intracellular
tyrosine kinase domain. Ligand binding and specificity
reside in the Ig-like domains 2 and 3, and the linker
region that connects these two. FGFR activation and
signaling depend on FGF-induced dimerization, a process
involving cell surface heparin or heparin sulfate
proteoglycans.
Length = 85
Score = 32.5 bits (74), Expect = 0.024
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189
G P P + + N + + R RN +L + ++ D G Y + NE+G+
Sbjct: 20 GNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 79
>gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of
Kirrel (kin of irregular chiasm-like) 3 (also known as
Neph2) and similar proteins. Ig5_KIRREL3-like: domain
similar to the fifth immunoglobulin (Ig)-like domain of
Kirrel (kin of irregular chiasm-like) 3 (also known as
Neph2). This protein has five Ig-like domains, one
transmembrane domain, and a cytoplasmic tail. Included
in this group is mammalian Kirrel (Neph1), Kirrel2
(Neph3), and Drosophila RST (irregular chiasm
C-roughest) protein. These proteins contain multiple Ig
domains, have properties of cell adhesion molecules, and
are important in organ development.
Length = 98
Score = 32.4 bits (74), Expect = 0.039
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 111 HDTQYGIKNENSSLFWFVYGYPKP-KVSFYFNDELIEMG--GRYDSSYTRNGQA---TLF 164
TQY I + + F++ P P ++ + + + +E G GRY + TL
Sbjct: 8 EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLT 67
Query: 165 INKMLDRDV-GMYEALASNEHGT 186
I+ + D Y A N G+
Sbjct: 68 ISNTQESDFQTSYNCTAWNSFGS 90
>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain
of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin
(Ig)-like domain of myotilin. Mytolin belongs to the
palladin-myotilin-myopalladin family. Proteins belonging
to the latter family contain multiple Ig-like domains
and function as scaffolds, modulating actin
cytoskeleton. Myotilin is most abundant in skeletal and
cardiac muscle, and is involved in maintaining sarcomere
integrity. It binds to alpha-actinin, filamin and actin.
Mutations in myotilin lead to muscle disorders.
Length = 75
Score = 31.8 bits (72), Expect = 0.041
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 132 PKPKVSFYFNDELIEMGGRYDSSYTRN-GQATLFINKMLDRDVGMYEALASNEHGTA 187
P PK+ + N+E+++ S Y N G+ TL I + +D G Y A NE G A
Sbjct: 11 PPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVA 67
>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of
fibroblast growth factor (FGF) receptor and similar
proteins. Ig2_FGFR_like: domain similar to the second
immunoglobulin (Ig)-like domain of fibroblast growth
factor (FGF) receptor. FGF receptors bind FGF signaling
polypeptides. FGFs participate in multiple processes
such as morphogenesis, development, and angiogenesis.
FGFs bind to four FGF receptor tyrosine kinases (FGFR1,
-2, -3, -4). Receptor diversity is controlled by
alternative splicing producing splice variants with
different ligand binding characteristics and different
expression patterns. FGFRs have an extracellular region
comprised of three Ig-like domains, a single
transmembrane helix, and an intracellular tyrosine
kinase domain. Ligand binding and specificity reside in
the Ig-like domains 2 and 3, and the linker region that
connects these two. FGFR activation and signaling depend
on FGF-induced dimerization, a process involving cell
surface heparin or heparin sulfate proteoglycans. This
group also contains fibroblast growth factor (FGF)
receptor_like-1(FGFRL1). FGFRL1 does not have a protein
tyrosine kinase domain at its C terminus; neither does
its cytoplasmic domain appear to interact with a
signaling partner. It has been suggested that FGFRL1 may
not have any direct signaling function, but instead acts
as a decoy receptor trapping FGFs and preventing them
from binding other receptors.
Length = 85
Score = 31.6 bits (72), Expect = 0.066
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGT 186
G P+P +++ + + + R R + TL + ++ D G Y + N++G+
Sbjct: 20 GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS 76
>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk
receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth
domain of Trk receptors TrkA, TrkB and TrkC, this is an
immunoglobulin (Ig)-like domain which binds to
neurotrophin. The Trk family of receptors are tyrosine
kinase receptors. They are activated by dimerization,
leading to autophosphorylation of intracellular tyrosine
residues, and triggering the signal transduction
pathway. TrkA, TrkB, and TrkC share significant sequence
homology and domain organization. The first three
domains are leucine-rich domains. The fourth and fifth
domains are Ig-like domains playing a part in ligand
binding. TrkA, Band C mediate the trophic effects of the
neurotrophin Nerve growth factor (NGF) family. TrkA is
recognized by NGF. TrkB is recognized by brain-derived
neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC
is recognized by NT-3. NT-3 is promiscuous as in some
cell systems it activates TrkA and TrkB receptors. TrkA
is a receptor found in all major NGF targets, including
the sympathetic, trigeminal, and dorsal root ganglia,
cholinergic neurons of the basal forebrain and the
striatum. TrKB transcripts are found throughout multiple
structures of the central and peripheral nervous
systems. The TrkC gene is expressed throughout the
mammalian nervous system.
Length = 81
Score = 31.2 bits (71), Expect = 0.081
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTR-----NGQATLFINKMLDR----DVGMYEA 178
V G PKP +++Y N ++ D T D + G Y
Sbjct: 7 VRGNPKPTLTWYHNGAVLN---ESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTL 63
Query: 179 LASNEHGTARQRVS 192
+ASNE+G + +S
Sbjct: 64 VASNEYGQDSKSIS 77
>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor (VEGFR).
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of
vascular endothelial growth factor receptor (VEGFR). The
VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. The VEGFR family consists of three
members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and
VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at
the Ig-like domains. VEGF-A is important to the growth
and maintenance of vascular endothelial cells and to the
development of new blood- and lymphatic-vessels in
physiological and pathological states. VEGFR-2 is a
major mediator of the mitogenic, angiogenic and
microvascular permeability-enhancing effects of VEGF-A.
VEGFR-1 may play an inhibitory part in these processes
by binding VEGF and interfering with its interaction
with VEGFR-2. VEGFR-1 has a signaling role in mediating
monocyte chemotaxis. VEGFR-2 and -1 may mediate a
chemotactic and a survival signal in hematopoietic stem
cells or leukemia cells. VEGFR-3 has been shown to be
involved in tumor angiogenesis and growth.
Length = 71
Score = 30.8 bits (70), Expect = 0.087
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V YP P++ +Y N +LI R S +L I + + D G Y + +N+
Sbjct: 7 VKAYPPPEIQWYKNGKLISEKNRTKKS-----GHSLTIKDVTEEDAGNYTVVLTNKQAKL 61
Query: 188 RQRVS 192
+R++
Sbjct: 62 EKRLT 66
>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like
domain of a follistatin-like molecule encoded by the
Mahya gene and similar proteins. Ig2_Follistatin_like:
domain similar to the second immunoglobulin (Ig)-like
domain found in a follistatin-like molecule encoded by
the CNS-related Mahya gene. Mahya genes have been
retained in certain Bilaterian branches during
evolution. They are conserved in Hymenoptera and
Deuterostomes, but are absent from other metazoan
species such as fruit fly and nematode. Mahya proteins
are secretory, with a follistatin-like domain
(Kazal-type serine/threonine protease inhibitor domain
and EF-hand calcium-binding domain), two Ig-like
domains, and a novel C-terminal domain. Mahya may be
involved in learning and memory and in processing of
sensory information in Hymenoptera and vertebrates.
Follistatin is a secreted, multidomain protein that
binds activins with high affinity and antagonizes their
signaling.
Length = 76
Score = 30.3 bits (68), Expect = 0.12
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 122 SSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT-LFINKMLDRDVGMYEALA 180
+SL G P P++++ N ++ + T + L I+ + D G Y +A
Sbjct: 1 ASLRCHAEGIPLPRLTWLKNGM--DITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIA 58
Query: 181 SNEHGTARQRVSS 193
NE G +SS
Sbjct: 59 KNEAGVDED-ISS 70
>gnl|CDD|223811 COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases
[Posttranslational modification, protein turnover,
chaperones / Intracellular trafficking and secretion].
Length = 200
Score = 31.8 bits (73), Expect = 0.14
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 142 DELIEMGGRYDSSYTRN-GQATLFINKMLDRDVGM--YEALASNEHGTARQRVSSGNPAQ 198
E++++ R + Y + GQ I K DRD M EA E+G + + S A
Sbjct: 141 REILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAK---EYGLIDKVIESREAAA 197
Query: 199 GS 200
Sbjct: 198 KL 199
>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of
the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like:
domain similar to the third immunoglobulin (Ig)-like
domain of the L1 cell adhesion molecule (CAM). L1
belongs to the L1 subfamily of cell adhesion molecules
(CAMs) and is comprised of an extracellular region
having six Ig-like domains and five fibronectin type III
domains, a transmembrane region and an intracellular
domain. L1 is primarily expressed in the nervous system
and is involved in its development and function. L1 is
associated with an X-linked recessive disorder, X-linked
hydrocephalus, MASA syndrome, or spastic paraplegia type
1, that involves abnormalities of axonal growth. This
group also contains the chicken neuron-glia cell
adhesion molecule, Ng-CAM and human neurofascin.
Length = 71
Score = 30.0 bits (68), Expect = 0.15
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 130 GYPKPKVSFY-FNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTAR 188
G P P++S+ EL +++ N TL I+ + + D G Y ASN G+AR
Sbjct: 9 GLPTPEISWIKIGGELPADRTKFE-----NFNKTLKIDNVSEEDDGEYRCTASNSLGSAR 63
>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of
myotilin, palladin, and myopalladin.
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in
myotilin, palladin, and myopalladin. Myotilin,
palladin, and myopalladin function as scaffolds that
regulate actin organization. Myotilin and myopalladin
are most abundant in skeletal and cardiac muscle;
palladin is ubiquitously expressed in the organs of
developing vertebrates and plays a key role in cellular
morphogenesis. The three family members each interact
with specific molecular partners: all three bind to
alpha-actinin; in addition, palladin also binds to
vasodilator-stimulated phosphoprotein (VASP) and ezrin,
myotilin binds to filamin and actin, and myopalladin
also binds to nebulin and cardiac ankyrin repeat protein
(CARP).
Length = 75
Score = 29.0 bits (65), Expect = 0.36
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRN-GQATLFINKMLDRDVGMYEALASNEHGT 186
V P P++ + N+E++ S Y N G+ L I D G Y A NE G
Sbjct: 7 VSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGV 66
Query: 187 A 187
Sbjct: 67 V 67
>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily.
Ig_2: subgroup of the immunoglobulin (Ig) domain found
in the Ig superfamily. The Ig superfamily is a
heterogenous group of proteins, built on a common fold
comprised of a sandwich of two beta sheets. Members of
the Ig superfamily are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of most
Ig domains is a disulfide bridge connecting the two
beta-sheets with a tryptophan residue packed against the
disulfide bond.
Length = 74
Score = 28.2 bits (63), Expect = 0.71
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 130 GYPKPKVSFYF-NDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTAR 188
G P+P + + + +LI R + NG TL I +D G + +ASN G A
Sbjct: 12 GDPEPAIHWISPDGKLISNSSR--TLVYDNG--TLDILITTVKDTGSFTCIASNAAGEAT 67
Query: 189 QRV 191
V
Sbjct: 68 ATV 70
>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like
domain of the receptor protein tyrosine phosphatase
(RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like:
domain similar to the second immunoglobulin (Ig)-like
domain found in the receptor protein tyrosine
phosphatase (RPTP)-F, also known as LAR. LAR belongs to
the RPTP type IIa subfamily. Members of this subfamily
are cell adhesion molecule-like proteins involved in
central nervous system (CNS) development. They have
large extracellular portions, comprised of multiple
Ig-like domains and two to nine fibronectin type III
(FNIII) domains, and a cytoplasmic portion having two
tandem phosphatase domains.
Length = 74
Score = 27.7 bits (61), Expect = 1.0
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGT 186
G P P+++++ + ++ R+G L I + D G YE +A+N GT
Sbjct: 9 GNPDPEITWFKDFLPVDTTSNGRIKQLRSG--ALQIENSEESDQGKYECVATNSAGT 63
>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2.
Ig1_Contactin-2: First Ig domain of the neural cell
adhesion molecule contactin-2-like. Contactins are
comprised of six Ig domains followed by four fibronectin
type III (FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-2 (TAG-1,
axonin-1) facilitates cell adhesion by homophilic
binding between molecules in apposed membranes. It may
play a part in the neuronal processes of neurite
outgrowth, axon guidance and fasciculation, and neuronal
migration. The first four Ig domains form the
intermolecular binding fragment, which arranges as a
compact U-shaped module by contacts between IG domains 1
and 4, and domains 2 and 3. The different contactins
show different expression patterns in the central
nervous system. During development and in adulthood,
contactin-2 is transiently expressed in subsets of
central and peripheral neurons. Contactin-2 is also
expressed in retinal amacrine cells in the developing
chick retina, corresponding to the period of formation
and maturation of AC processes.
Length = 94
Score = 28.0 bits (62), Expect = 1.3
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 152 DSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSS 193
+S YT + N RD G Y+ LA N GT R ++
Sbjct: 50 ESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREAN 91
>gnl|CDD|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37
(TRIM37) family, MATH domain; TRIM37 is a peroxisomal
protein and is a member of the tripartite motif (TRIM)
protein subfamily, also known as the
RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger
proteins. Mutations in the human TRIM37 gene (also known
as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism,
a rare growth disorder of prenatal onset characterized
by dysmorphic features, pericardial constriction and
hepatomegaly. TRIM37, similar to other TRIMs, contains a
cysteine-rich, zinc-binding RING-finger domain followed
by another cysteine-rich zinc-binding domain, the B-box,
and a coiled-coil domain. TRIM37 is autoubiquitinated in
a RING domain-dependent manner, indicating that it
functions as an ubiquitin E3 ligase. In addition to the
tripartite motif, TRIM37 also contains a MATH domain
C-terminal to the coiled-coil domain. The MATH domain of
TRIM37 has been shown to interact with the TRAF domain
of six known TRAFs in vitro, however, it is unclear
whether this is physiologically relevant. Eleven TRIM37
mutations have been associated with Mulibrey nanism so
far. One mutation, Gly322Val, is located in the MATH
domain and is the only mutation that does not affect the
length of the protein. It results in the incorrect
subcellular localization of TRIM37.
Length = 132
Score = 28.1 bits (63), Expect = 1.8
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 21 PFHPDKSFYFPRDFDLERPPREGYAQAPRFLNQEHDT 57
F + + + R F L+ EGY L E+DT
Sbjct: 92 DFEVGECWGYNRFFRLDLLINEGY------LLPENDT 122
Score = 28.1 bits (63), Expect = 1.8
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 77 PFHPDKSFYFPRDFDLERPPREGYAQAPRFLNQEHDT 113
F + + + R F L+ EGY L E+DT
Sbjct: 92 DFEVGECWGYNRFFRLDLLINEGY------LLPENDT 122
>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the
L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third
immunoglobulin (Ig)-like domain of the L1 cell adhesion
molecule (CAM). L1 belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains, five
fibronectin type III domains, a transmembrane region and
an intracellular domain. L1 is primarily expressed in
the nervous system and is involved in its development
and function. L1 is associated with an X-linked
recessive disorder, X-linked hydrocephalus, MASA
syndrome, or spastic paraplegia type 1, that involves
abnormalities of axonal growth. This group also contains
the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Length = 71
Score = 26.8 bits (59), Expect = 2.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 158 NGQATLFINKMLDRDVGMYEALASNEHGTAR 188
N TL ++ +L+ D G Y A N G+AR
Sbjct: 33 NNNKTLQLDNVLESDDGEYVCTAENSEGSAR 63
>gnl|CDD|233304 TIGR01180, aman2_put, alpha-1,2-mannosidase, putative. The
identification of members of this family as putative
alpha-1,2-mannosidases is based on an unpublished
characterization of the aman2 gene in Bacillus sp. M-90
by Maruyama,Y., Nakajima,M. and Nakajima,T. (Genbank
accession BAA76709, pid g4587313). Most members of this
family appear to have signal sequences. Members from the
dental pathogen Porphyromonas gingivalis have been
described as immunoreactive with periodontitis patient
serum [Cell envelope, Biosynthesis and degradation of
surface polysaccharides and lipopolysaccharides].
Length = 750
Score = 28.7 bits (64), Expect = 2.4
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 47 APRFLNQEHDTQEKLNPERPKFEPYLPPGVPFHPDKSFYFPRDFDLERPP-REGYAQAPR 105
A RF+N+ H + + N ER F+P L G F P D E A +
Sbjct: 502 AHRFMNRSHLYRHEYNLERGFFQPGLFRG-------PFSPPFDPFEFTEGNAEHNAWSYF 554
Query: 106 FLNQEHDTQ 114
F Q HD
Sbjct: 555 FDVQ-HDID 562
>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain. This domain contains
immunoglobulin-like domains.
Length = 80
Score = 26.6 bits (59), Expect = 2.9
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 11/58 (18%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185
G P P ++Y + + + Q F + D G Y +ASN G
Sbjct: 23 APGNPPPNYTWYKDGVPLS-----------SSQNGFFTPNVSAEDSGTYTCVASNGGG 69
>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down
Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the
seventh immunoglobulin (Ig)-like domain of Down Syndrome
Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion
molecule expressed largely in the developing nervous
system. The gene encoding DSCAM is located at human
chromosome 21q22, the locus associated with the mental
retardation phenotype of Down Syndrome. DSCAM is
predicted to be the largest member of the IG
superfamily. It has been demonstrated that DSCAM can
mediate cation-independent homophilic intercellular
adhesion.
Length = 79
Score = 26.4 bits (58), Expect = 3.2
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 16/72 (22%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTR----NGQA------TLFINKMLDRDVGMYEAL 179
GYP P + + + GR +T G+ +L I +L+ D G Y
Sbjct: 9 GYPPPTIVWKHSK------GRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCK 62
Query: 180 ASNEHGTARQRV 191
SN+ G +
Sbjct: 63 VSNDVGADASKS 74
>gnl|CDD|130337 TIGR01270, Trp_5_monoox, tryptophan 5-monooxygenase, tetrameric.
This model describes tryptophan 5-monooxygenase, a
member of the family of tetrameric, biopterin-dependent
aromatic amino acid hydroxylases found in metazoans. It
is closely related to tetrameric
phenylalanine-4-hydroxylase and tyrosine
3-monooxygenase, and more distantly related to the
monomeric phenylalanine-4-hydroxylase found in some
Gram-negative bacteria [Energy metabolism, Amino acids
and amines].
Length = 464
Score = 27.9 bits (62), Expect = 3.6
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 40 PREGYAQAPRFLNQEHDTQEKLNPERP--KFEPYLPPGVPFHPDKSFYFPR 88
G +A L D E +P RP Y PG +FP+
Sbjct: 84 FHYGLQEAMDLLKSGLDVHEVSSPIRPTLIEAQYTEPGSDDATTGVPWFPK 134
>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of
Neural Cell Adhesion Molecule NCAM-1 (NCAM).
Ig3_NCAM-1_like: domain similar to the third
immunoglobulin (Ig)-like domain of Neural Cell Adhesion
Molecule NCAM-1 (NCAM). NCAM plays important roles in
the development and regeneration of the central nervous
system, in synaptogenesis and neural migration. NCAM
mediates cell-cell and cell-substratum recognition and
adhesion via homophilic (NCAM-NCAM), and heterophilic
(NCAM-non-NCAM), interactions. NCAM is expressed as
three major isoforms having different intracellular
extensions. The extracellular portion of NCAM has five
N-terminal Ig-like domains and two fibronectin type III
domains. The double zipper adhesion complex model for
NCAM homophilic binding involves Ig1, Ig2, and Ig3. By
this model, Ig1,and Ig2 mediate dimerization of NCAM
molecules situated on the same cell surface (cis
interactions), and Ig3 domains mediate interactions
between NCAM molecules expressed on the surface of
opposing cells (trans interactions), through binding to
the Ig1 and Ig2 domains. The adhesive ability of NCAM is
modulated by the addition of polysialic acid chains to
the fifth Ig-like domain.
Length = 95
Score = 26.4 bits (58), Expect = 4.1
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT-LFINKMLDRDVGMYEALASNEHGTAR 188
G+P+P +++ + E IE G + Y+ N + + I + D Y +A N+ G
Sbjct: 29 GFPEPTMTWTKDGEPIESG---EEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQE 85
Query: 189 QRVS 192
+
Sbjct: 86 AEIH 89
>gnl|CDD|240352 PTZ00302, PTZ00302, N-acetylglucosamine-phosphate mutase;
Provisional.
Length = 585
Score = 27.7 bits (62), Expect = 5.1
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 24/50 (48%)
Query: 158 NGQATLFINKML--------------------DRDVGMY-EALASNEHGT 186
NG +T ++N++L D+G+Y EA N HGT
Sbjct: 381 NGASTNYLNELLGRLRVYCAPTGVKNLHPKAHKYDIGIYFEA---NGHGT 427
>gnl|CDD|227231 COG4894, COG4894, Uncharacterized conserved protein [Function
unknown].
Length = 159
Score = 26.7 bits (59), Expect = 7.3
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 1 MREKLNPERPKFEPYLPPGVPFHPDKSFYFPRD---FDLERPPREG 43
+ +KL P++E G K F RD D G
Sbjct: 58 IEQKLLSLLPRYEISDGGGTVCEVRKKVTFSRDKFEIDGLNWEIHG 103
>gnl|CDD|216216 pfam00962, A_deaminase, Adenosine/AMP deaminase.
Length = 328
Score = 26.9 bits (60), Expect = 7.5
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 2/56 (3%)
Query: 57 TQEKLNPERPKFEPYLPPGV--PFHPDKSFYFPRDFDLERPPREGYAQAPRFLNQE 110
+ K K + + V F D +++ AQ PR E
Sbjct: 24 AKRKGIILPEKVDKEVGKLVTLYEKFRSLKLFLYDLEIDVLVLRWTAQDPRRYAYE 79
Score = 26.5 bits (59), Expect = 9.4
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 4 KLNPERPKFEPYLPPGV--PFHPDKSFYFPRDFDLERPPREGYAQAPRFLNQE 54
K K + + V F D +++ AQ PR E
Sbjct: 27 KGIILPEKVDKEVGKLVTLYEKFRSLKLFLYDLEIDVLVLRWTAQDPRRYAYE 79
>gnl|CDD|200511 cd11250, Sema_3B, The Sema domain, a protein interacting module, of
semaphorin 3B (Sema3B). Sema3B is coexpressed with
semaphorin 3F and both proteins are candidate tumor
suppressors. Both Sema3B and Sema3F show high levels of
expression in normal tissues and low-grade tumors but
are down-regulated in highly metastatic tumors in the
lung, melanoma cells, bladder carcinoma cells and
prostate carcinoma. They are upregulated by estrogen and
inhibit cell motility and invasiveness through decreased
FAK phosphorylation and inhibition of MMP-2 and MMP-9
expression. Two receptor families, the neuropilins (NP)
and plexins, have been implicated in mediating the
actions of semaphorins 3B and 3F. Sema3B is a member of
the class 3 semaphorin family of proteins. Semaphorins
are regulatory molecules in the development of the
nervous system and in axonal guidance. They also play
important roles in other biological processes, such as
angiogenesis, immune regulation, respiration systems and
cancer. The Sema domain is located at the N-terminus and
contains four disulfide bonds formed by eight conserved
cysteine residues. It serves as a receptor-recognition
and -binding module.
Length = 471
Score = 26.8 bits (59), Expect = 8.6
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 88 RDFDLERPPREGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKP------KVSFYFN 141
RDF + R Q P ++HD+++ N F V+ P+ K+ F+F
Sbjct: 151 RDFTIFR----SLGQRPSLRTEQHDSRW----LNEPKFVKVFWIPESENPDDDKIYFFFR 202
Query: 142 DELIEMGGRYDSSYTRNGQ 160
+ +E G SY+R GQ
Sbjct: 203 ETAVEAAGLGKQSYSRIGQ 221
>gnl|CDD|237911 PRK15106, PRK15106, nucleoside-specific channel-forming protein
Tsx; Provisional.
Length = 289
Score = 26.6 bits (59), Expect = 8.7
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 26/101 (25%)
Query: 99 GYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSF----------------YF-N 141
GY AP+F + GI + S LF + +P+ S YF N
Sbjct: 74 GYVDAPKFFGVGNSNDKGIWDHGSPLFMEI----EPRFSIDKLTGTDLSFGPFKEWYFAN 129
Query: 142 DELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASN 182
+ + +MG DS Q+T ++ D D G+ +L+ N
Sbjct: 130 NYIYDMGRNKDSR-----QSTWYMGLGTDIDTGLPMSLSLN 165
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.140 0.440
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,147,850
Number of extensions: 1060066
Number of successful extensions: 953
Number of sequences better than 10.0: 1
Number of HSP's gapped: 945
Number of HSP's successfully gapped: 51
Length of query: 202
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 110
Effective length of database: 6,857,034
Effective search space: 754273740
Effective search space used: 754273740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.5 bits)