RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5280
(202 letters)
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 66.9 bits (164), Expect = 4e-15
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
+AP+ + Q + ++ V G P P+ +Y N IE R + +
Sbjct: 4 EAPKIFERIQS-QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC 62
Query: 162 TLFINKMLDRDVGMYEALASNEHGTA 187
L I + D A N G
Sbjct: 63 ELVIRDVTGEDSASIMVKAINIAGET 88
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 65.0 bits (159), Expect = 2e-14
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 99 GYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRN 158
G PRF+ + + + + V G P P VS+Y N ++ + +
Sbjct: 1 GAMGPPRFIQVPEN-MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEK 59
Query: 159 GQATLFINKMLDRDVGMYEALASNEHGTA 187
G +L + D G Y +A N G A
Sbjct: 60 GLHSLIFEVVRASDAGAYACVAKNRAGEA 88
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 66.0 bits (161), Expect = 3e-14
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Query: 92 LERPPREGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRY 151
LE E P F D ++ + V GYP P+V ++ +D ++ +
Sbjct: 30 LEEVAEEKPHVKPYFTKTILD-MEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHF 88
Query: 152 DSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
Y G +L I+++ D Y A N G A
Sbjct: 89 QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEA 124
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 61.1 bits (149), Expect = 8e-13
Identities = 19/61 (31%), Positives = 25/61 (40%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V G PKP VS+ N + + R + G L I D G Y A NE+G
Sbjct: 29 VQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGAR 88
Query: 188 R 188
+
Sbjct: 89 Q 89
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 60.5 bits (147), Expect = 1e-12
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ 160
P FL D + + + V G P P +S+ + + + + NG
Sbjct: 7 GFRPHFLQAPGD-LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTAR 188
+L I + RD G+Y +A+N G
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNS 93
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 60.4 bits (147), Expect = 1e-12
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 102 QAPRFLN--QEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNG 159
APR + H G +N+ V P +V +Y N ++ + + +G
Sbjct: 7 HAPRITLRMRSHRVPCG---QNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN-TSG 62
Query: 160 QATLFINKMLDRDVGMYEALASNEHGTAR 188
TL I D G Y A+ +N G A
Sbjct: 63 VLTLEILDCHTDDSGTYRAVCTNYKGEAS 91
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 60.1 bits (146), Expect = 2e-12
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 101 AQAPRFLNQEHDTQYGI-KNENSSLFW--FVYGYPKPKVSFYFNDELIEMGGRYDSSYTR 157
+AP + N E + +++ + G P P + + N + + R R
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61
Query: 158 NGQATLFINKMLDRDVGMYEALASNEHGTAR 188
N +L + ++ D G Y + NE+G+
Sbjct: 62 NQHWSLIMESVVPSDKGNYTCVVENEYGSIN 92
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 60.0 bits (146), Expect = 2e-12
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ 160
+ P + D + + G P+P + + + I GG+Y S G
Sbjct: 4 SSKPVIVTGLQD-TTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE-DKGG 61
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTA 187
L I+K D G+Y N G+
Sbjct: 62 FFLEIHKTDTSDSGLYTCTVKNSAGSV 88
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 60.1 bits (146), Expect = 2e-12
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 6/106 (5%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEM-GGRYDSSYTRNG 159
+ AP F + + + V G PKPK+ ++ + + I Y +G
Sbjct: 6 SGAPFFEMKLKH-YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 64
Query: 160 QATLFINKMLDRDVGMYEALASNEHG----TARQRVSSGNPAQGSG 201
+L D G Y +A+N G T R V + N SG
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGPSSG 110
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 58.5 bits (142), Expect = 6e-12
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 128 VYGYPKP-KVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGT 186
+ Y + +V++YF +E +Y+ +Y +G A L++ + D G Y N++G
Sbjct: 25 IENYDQSTQVTWYFGVRQLENSEKYEITY-EDGVAILYVKDITKLDDGTYRCKVVNDYGE 83
Query: 187 A 187
Sbjct: 84 D 84
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 60.9 bits (148), Expect = 7e-12
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
P+ L + ++ E S+ G P P +++ +LI+ G Y TR+ +
Sbjct: 103 HLPKTLEGMGA-VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTS 161
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+F N + +D G Y A N G ++ V
Sbjct: 162 LVFPNGVERKDAGFYVVCAKNRFGIDQKTVE 192
Score = 60.5 bits (147), Expect = 9e-12
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFW--FVYGYPKPKVSFYFNDELIEM-GGRYDSSYTR 157
A AP F + + S+ V G+PKP V +Y + I G +Y +
Sbjct: 2 AMAPHFKEELRNLN---VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 158 NGQATLFINKMLDRDVGMYEALASNEHGTAR 188
G L I + D D +Y+ A+N+ G+
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRATNQGGSVS 89
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 59.2 bits (143), Expect = 7e-12
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 10/95 (10%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ--- 160
P + ++ + + + V G P P + + FN ++ + +
Sbjct: 4 PASVQLHT----AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59
Query: 161 ---ATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
L +N+ + G Y LA+N G A +
Sbjct: 60 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM 94
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 58.1 bits (141), Expect = 1e-11
Identities = 25/89 (28%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWF--VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNG 159
AP F + D E V G P P++++ N + I +Y S G
Sbjct: 10 VAPSFSSVLKDCAV---IEGQDFVLQCSVRGTPVPRITWLLNGQPI----QYARSTCEAG 62
Query: 160 QATLFINKMLDRDVGMYEALASNEHGTAR 188
A L I L D G Y LA N G
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVS 91
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 57.7 bits (140), Expect = 1e-11
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
A R L + + E++ G P P V++ +++ R+ + T ++T
Sbjct: 14 AARILTKPRS-MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT-KYKST 71
Query: 163 LFINKMLDRDVGMYEALASNEHGTAR 188
I+ + D G Y + N G
Sbjct: 72 FEISSVQASDEGNYSVVVENSEGKQE 97
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 61.1 bits (148), Expect = 1e-11
Identities = 20/106 (18%), Positives = 39/106 (36%)
Query: 87 PRDFDLERPPREGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIE 146
+F + R L D + + +L V+G P P+VS+ N++ +
Sbjct: 205 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALA 264
Query: 147 MGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+ + A IN + D G Y + N++G+ +
Sbjct: 265 SDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFT 310
Score = 55.3 bits (133), Expect = 2e-09
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPK-PKVSFYFNDELIEMGGRYDSSYTRNGQA 161
P F+ N L V K + +Y ++ I + ++D ++G
Sbjct: 7 GPHFVEYLSWEV--TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD---FKDGIC 61
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRVS 192
TL I + +D G+YE + ++ G + R+
Sbjct: 62 TLLITEFSKKDAGIYEVILKDDRGKDKSRLK 92
Score = 50.3 bits (120), Expect = 7e-08
Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 2/101 (1%)
Query: 93 ERPPREGYAQAPRFLNQEHDTQYGIKNENSSLFWFV-YGYPKPKVSFYFNDELIEMGGRY 151
E + D + E L+ FV Y KV++ N I R
Sbjct: 96 EAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRV 155
Query: 152 DSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+ T Q L IN+ D G Y + ++ V
Sbjct: 156 KTGVT-GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVD 195
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 59.3 bits (144), Expect = 2e-11
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFW--FVYGYPKPKVSFYFNDELIEMGGRYDSSYTRN 158
+AP + D + + G P P + +Y + + +Y +
Sbjct: 5 GEAPGIRKEMKDVTT---KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKY-KMSSDG 60
Query: 159 GQATLFINKMLDRDVGMYEALASNEHGTAR 188
TL + D G+Y +A+NE G
Sbjct: 61 RTHTLTVMTEEQEDEGVYTCIATNEVGEVE 90
Score = 54.3 bits (131), Expect = 1e-09
Identities = 12/61 (19%), Positives = 22/61 (36%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
G P P ++++ +L++ T + + N G Y+ SN GT
Sbjct: 127 YIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186
Query: 188 R 188
Sbjct: 187 D 187
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 57.0 bits (138), Expect = 3e-11
Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 2/88 (2%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ 160
P FL + + L V G P P V + + + R +
Sbjct: 11 GSPPCFLRFPRP-VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA-DGAE 68
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTAR 188
L + L D G+Y A N G A
Sbjct: 69 HGLLLTAALPTDAGVYVCRARNAAGEAY 96
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 58.3 bits (141), Expect = 6e-11
Identities = 20/101 (19%), Positives = 38/101 (37%)
Query: 87 PRDFDLERPPREGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIE 146
+F + R L D + + +L V+G P P+VS+ N++ +
Sbjct: 100 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALA 159
Query: 147 MGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
+ + A IN + D G Y + N++G+
Sbjct: 160 QTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE 200
Score = 51.8 bits (124), Expect = 2e-08
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
Y KV++ N I R + T Q L IN+ D G Y +
Sbjct: 27 TYYVEDLKVNWSHNGSAIRYSDRVKTGVT-GEQIWLQINEPTPNDKGKYVMELFDGKTGH 85
Query: 188 RQRVS 192
++ V
Sbjct: 86 QKTVD 90
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 55.9 bits (135), Expect = 9e-11
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEM-GGRYDSSYTRNGQ 160
+AP F+ + + ++ ++ L + P PK+ + N+E+++ R G+
Sbjct: 14 RAPMFIYKPQSKKV-LEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGR 72
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTA 187
TL I + +D G Y A NE G
Sbjct: 73 VTLLIKDVNKKDAGWYTVSAVNEAGVT 99
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 58.7 bits (142), Expect = 1e-10
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
PRF+ + ++ ++E++ + G P+ KV +Y ++ I+ ++ S+ A
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV-ESVAV 348
Query: 163 LFINKMLDRDVGMYEALASNEHGTARQRV 191
L + + D G Y A N G+A
Sbjct: 349 LEMYNLSVEDSGDYTCEAHNAAGSASSST 377
Score = 56.0 bits (135), Expect = 1e-09
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
+ P F+ + E +L V G P+ ++++Y + Y + N A
Sbjct: 4 EPPYFIEPLEHVEA-AIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFK-NNVA 61
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+L INK+ DVG Y A N G
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAV 92
Score = 53.7 bits (129), Expect = 7e-09
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 2/95 (2%)
Query: 98 EGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTR 157
+ P F + E+ + V G K+++ ++ I GG Y +
Sbjct: 192 SEHEVPPFFDLKPVS-VDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVE 250
Query: 158 NGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
N ATL + K+ D G Y ASN G
Sbjct: 251 NT-ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ 284
Score = 50.2 bits (120), Expect = 1e-07
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
+ G +VS+Y + EL++ +S+ N ATL I + VG Y ASN GTA
Sbjct: 125 INGSEPLQVSWYKDGELLKDDANLQTSFIHNV-ATLQILQTDQSHVGQYNCSASNPLGTA 183
Query: 188 RQRVS 192
Sbjct: 184 SSSAK 188
Score = 50.2 bits (120), Expect = 1e-07
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
P F + H +K + L + G P +VS++ + + G +Y + N +
Sbjct: 384 PPVFRKKPHP-VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKY-KIMSENFLTS 441
Query: 163 LFINKMLDRDVGMYEALASNEHGTAR 188
+ I + D+G Y+ ASN+ G+
Sbjct: 442 IHILNVDSADIGEYQCKASNDVGSDT 467
Score = 47.5 bits (113), Expect = 9e-07
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
PRF+ + D + E L + G V+++ + I AT
Sbjct: 477 PPRFVKKLSDIS-TVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIAT 535
Query: 163 LFINKMLDRDVGMYEALASNEHGTARQRVS 192
L ++ + G Y NE GT +
Sbjct: 536 LQFSRAEPANAGKYTCQIKNEAGTQECFAT 565
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 55.2 bits (133), Expect = 2e-10
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ-- 160
PR ++ E + + V G P P + + N + + Y + G+
Sbjct: 8 PPRVVSLEE----PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS 63
Query: 161 -ATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
L NK + G Y +A N GTA Q ++
Sbjct: 64 EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTIN 96
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 57.3 bits (138), Expect = 2e-10
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWF--VYGYPKPKVSFYFNDELIEMGGRYDSSYTRN-GQ 160
F E + I + FW KV++ FN++ I G +Y RN G
Sbjct: 3 DPFTKSELAVE--ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTARQRV 191
+F+ K+ D D G Y + T V
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTV 91
Score = 52.6 bits (126), Expect = 7e-09
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKP-KVSFYFNDELIEMGGRYDSSYTRNGQ 160
Q P F+ N L V K + +Y ++ I + ++D +G
Sbjct: 116 QGPHFVEYLSWEV--TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK---DGI 170
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTAR 188
TL I + +D G+YE + ++ G +
Sbjct: 171 CTLLITEFSKKDAGIYEVILKDDRGKDK 198
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 56.7 bits (137), Expect = 2e-10
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYT-RNGQ 160
QAP F ++ ++ + G+P P+VS++ + ++I + +G+
Sbjct: 4 QAPTFTQPLQS-VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTAR 188
A L I + + G Y A+N G A
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSGQAT 90
Score = 54.0 bits (130), Expect = 2e-09
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ-ATLFINKMLDRDVGMYEALASNEHGT 186
V G P P V FY + I+ + ++ G +L I + D G Y A+N G
Sbjct: 127 VTGIPTPVVKFYRDGAEIQSSLDF--QISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 187 AR 188
A
Sbjct: 185 AT 186
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 54.3 bits (131), Expect = 2e-10
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
G P P ++ D + ++ ++F D G Y+ NE G
Sbjct: 26 FIGAPDPTATWTVGDSGAALAPEL-LVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGED 84
Query: 188 R 188
Sbjct: 85 E 85
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 57.3 bits (138), Expect = 3e-10
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 1/91 (1%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRN-GQA 161
+ E + K + KV++ FN++ I G +Y RN G
Sbjct: 107 PTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII 166
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+F+ K+ D D G Y + T V
Sbjct: 167 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVV 197
Score = 48.1 bits (114), Expect = 5e-07
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 128 VYGYPKP-KVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGT 186
V K + +Y ++ I + ++D +G TL I + +D G+YE + ++ G
Sbjct: 245 VANIKKETHIVWYKDEREISVDEKHDFK---DGICTLLITEFSKKDAGIYEVILKDDRGK 301
Query: 187 AR 188
+
Sbjct: 302 DK 303
Score = 47.3 bits (112), Expect = 7e-07
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 5/92 (5%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFWFV-YGYPKPKVSFYFNDELIEMGGRYDSSYTRNG 159
P + + SL + PK + S+ + E R +
Sbjct: 1 GIDPFTKEVVVNVD---DDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESK-GN 56
Query: 160 QATLFINKMLDRDVGMYEALASNEHGTARQRV 191
+ + + D+G+Y ++ G A +
Sbjct: 57 KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYL 88
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 56.7 bits (137), Expect = 4e-10
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
PRF+ + ++ ++E++ + G P+ KV +Y ++ I+ ++ A
Sbjct: 98 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKF-RMSFVESVAV 156
Query: 163 LFINKMLDRDVGMYEALASNEHGTARQRVS 192
L + + D G Y A N G+A S
Sbjct: 157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTS 186
Score = 56.7 bits (137), Expect = 5e-10
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 2/94 (2%)
Query: 99 GYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRN 158
G P F + E+ + V G K+++ ++ I GG Y +
Sbjct: 1 GAMAPPFFDLKPVSVD-LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTL-VE 58
Query: 159 GQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
ATL + K+ D G Y ASN G
Sbjct: 59 NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ 92
Score = 54.4 bits (131), Expect = 3e-09
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
P F + H +K + L + G P +VS++ + + G +Y + N +
Sbjct: 192 PPVFRKKPHP-VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKY-KIMSENFLTS 249
Query: 163 LFINKMLDRDVGMYEALASNEHGTARQRVS 192
+ I + D+G Y+ ASN+ G+ S
Sbjct: 250 IHILNVDSADIGEYQCKASNDVGSYTCVGS 279
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 53.9 bits (130), Expect = 5e-10
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
P+ + Q + Q E+ LF V G ++ + I+ + +
Sbjct: 6 SGPQII-QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENS-ENGS 63
Query: 162 TLFINKMLDRDVGMYEALASNEHGTAR 188
L I G Y L N+ G+ +
Sbjct: 64 KLTILAARQEHCGCYTLLVENKLGSRQ 90
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 56.1 bits (135), Expect = 6e-10
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 97 REGYAQAPRFLNQEHD-TQYGIKNENSSLFW--FVYGYPKPKVSFYFNDELIEMGGRYDS 153
+AP + N E + +++ + G P P + + N + + R
Sbjct: 9 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGG 68
Query: 154 SYTRNGQATLFINKMLDRDVGMYEALASNEHGTAR 188
RN +L + ++ D G Y + NE+G+
Sbjct: 69 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 103
Score = 39.5 bits (92), Expect = 3e-04
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 10/72 (13%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSS----------YTRNGQATLFINKMLDRDVGMYE 177
VY +P + + + E D + L + + + D G Y
Sbjct: 142 VYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYI 201
Query: 178 ALASNEHGTARQ 189
SN G A Q
Sbjct: 202 CKVSNYIGQANQ 213
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 56.4 bits (136), Expect = 7e-10
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
+ PRF+ + D Q G+ +S G PKP+V++ + + + + A
Sbjct: 5 EPPRFIKEPKD-QIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 162 TLFI-NKMLDRDVGMYEALASNEHGTARQRVS 192
L I RD +YE +A N G
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAK 95
Score = 50.6 bits (121), Expect = 6e-08
Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 6/95 (6%)
Query: 95 PPREGYAQAPRFLNQEHDTQYGIKNENSSLFW--FVYGYPKPKVSFYFNDELIEMGGRYD 152
+ + P + G P P+++++ + ++ +
Sbjct: 100 REDQLPSGFPNIDMGPQLKVV---ERTRTATMLCAASGNPDPEITWFKDFLPVDPSAS-N 155
Query: 153 SSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
+ L I + D G YE +A+N G
Sbjct: 156 GRIKQLRSGALQIESSEETDQGKYECVATNSAGVR 190
Score = 39.8 bits (93), Expect = 2e-04
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ 160
APRF + + N ++ G P P V + E + G+
Sbjct: 203 NVAPRFSILPMSHE-IMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDM-----PVGR 256
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
L + + +D Y +A + G
Sbjct: 257 NVLELTDV--KDSANYTCVAMSSLGVIEAVAQ 286
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 56.4 bits (136), Expect = 8e-10
Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 87 PRDFDLERPPREGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIE 146
P+++ + + PRF+ + + T+ + ++++ + V P V+++ +D ++
Sbjct: 466 PQEYSIRDAFWDRSEAQPRFIVKPYGTEV-GEGQSANFYCRVIASSPPVVTWHKDDRELK 524
Query: 147 MGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
+Y Y L IN++ D G Y A N +GT
Sbjct: 525 QSVKYMKRYN-GNDYGLTINRVKGDDKGEYTVRAKNSYGTK 564
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 52.3 bits (126), Expect = 2e-09
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
AP + Q E+ + G P P++ ++ ++E + ++G
Sbjct: 10 APTITGNLEN-QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI---VLKDGNRN 65
Query: 163 LFINKMLDRDVGMYEALASNEHGTAR 188
L I ++ D G+Y A + G A+
Sbjct: 66 LTIRRVRKEDEGLYTCQACSVLGCAK 91
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 54.6 bits (131), Expect = 2e-09
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 101 AQAPRFLNQEH-DTQYGIKNENSSLFW--FVYGYPKPKVSFYFNDELIEMGGRYDSSYTR 157
AP + E D + +++ + G P P +S+ N R R
Sbjct: 9 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 68
Query: 158 NGQATLFINKMLDRDVGMYEALASNEHGTAR 188
+ Q +L + ++ D G Y + N+ G+ R
Sbjct: 69 HQQWSLVMESVVPSDRGNYTCVVENKFGSIR 99
Score = 39.2 bits (91), Expect = 4e-04
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSS-----------YTRNGQATLFINKMLDRDVGMY 176
VY +P + + + E+ D + + L + + +RD G Y
Sbjct: 138 VYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEY 197
Query: 177 EALASNEHGTARQRVS 192
A+N G A +
Sbjct: 198 LCRATNFIGVAEKAFW 213
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 54.4 bits (131), Expect = 3e-09
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATL 163
P+ L + + ++ E S+ G P P +++ +LI+ G Y TR+ + +
Sbjct: 105 PKTL-EGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLV 163
Query: 164 FINKMLDRDVGMYEALASNEHGTA 187
F N + +D G Y A N G
Sbjct: 164 FPNGVERKDAGFYVVCAKNRFGID 187
Score = 52.5 bits (126), Expect = 2e-08
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEM-GGRYDSSYTRNG 159
A AP F +E N++L V G+PKP V +Y + I G +Y + G
Sbjct: 2 AMAPHFK-EELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 160 QATLFINKMLDRDVGMYEALASNEHGTA 187
L I + D D +Y+ A+N+ G+
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSV 88
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 51.2 bits (123), Expect = 3e-09
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNG- 159
P+ D + + ++ G P P+V++ I +
Sbjct: 3 GIPPKIEALPSD-ISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 160 QATLFINKMLDRDVGMYEALASNEHGTAR 188
TL I + +D G+Y NE G+
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSDS 90
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 53.2 bits (128), Expect = 3e-09
Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 6/88 (6%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWF--VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ 160
+ + + S F+ G P+ + E I R +
Sbjct: 2 LLQVTISLSKVE---LSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKE-GVR 57
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTAR 188
+ L I D G+Y A++ G +
Sbjct: 58 SRLTIYNANIEDAGIYRCQATDAKGQTQ 85
Score = 46.3 bits (110), Expect = 1e-06
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ 160
Q F ++ + E++ + V P P VS+ +++E + + N
Sbjct: 94 YQKLTFREVVSPQEF-KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN- 151
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTARQ 189
L I + D G+Y E
Sbjct: 152 -NLQILNINKSDEGIYRCEGRVEARGEID 179
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 51.3 bits (123), Expect = 4e-09
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ----ATLFINKMLDRDVGMYEALASNE 183
V G PKP + +++N ++ + L ++ + G Y +A NE
Sbjct: 25 VKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNE 84
Query: 184 HGTARQRVS 192
+G +++S
Sbjct: 85 YGKDEKQIS 93
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 54.6 bits (131), Expect = 4e-09
Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 1/92 (1%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKP-KVSFYFNDELIEMGGRYDSSYTRNGQ 160
PR + + + +L V G P + + + + I +S
Sbjct: 617 VLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG 676
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+ L I + G + A N G +
Sbjct: 677 SVLTIEAVEASHAGNFTCHARNLAGHQQFTTP 708
Score = 51.9 bits (124), Expect = 3e-08
Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 8/101 (7%)
Query: 96 PREGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSY 155
P + + P FL + + + + + G P P++ + +D
Sbjct: 31 PPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQI 90
Query: 156 TRNGQATLFINKML------DRDVGMYEALASNEHGTARQR 190
+ +G L + +Y LA N+ G+ R
Sbjct: 91 SSDG--KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR 129
Score = 49.9 bits (119), Expect = 2e-07
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRY----DSSYTRN 158
P + Q + + L G P P++S+ + + I RY + +
Sbjct: 428 DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGD 487
Query: 159 GQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+ L I + D G+Y+ +A ++ G A
Sbjct: 488 VVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAK 521
Score = 49.5 bits (118), Expect = 2e-07
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGR--YDSSYTRNGQ 160
PR++ + D + + ++ + G+PKP+V++ + S R +
Sbjct: 714 PPRWILEPTD-KAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE 772
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTARQRV 191
TL ++ + + G Y A N G+ V
Sbjct: 773 GTLHVDNIQKTNEGYYLCEAINGIGSGLSAV 803
Score = 48.8 bits (116), Expect = 3e-07
Identities = 13/92 (14%), Positives = 22/92 (23%), Gaps = 16/92 (17%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFW--FVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ 160
+ + G P VS+ + + I
Sbjct: 343 PLSAKIDPPTQTV---DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES---------- 389
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
L I + D GMY+ N+ +A
Sbjct: 390 -VLRIESVKKEDKGMYQCFVRNDRESAEASAE 420
Score = 48.8 bits (116), Expect = 4e-07
Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 1/90 (1%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYD-SSYTRNGQAT 162
+ D + + +L GYP P +Y E + + T
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT 307
Query: 163 LFINKMLDRDVGMYEALASNEHGTARQRVS 192
L I + D G Y + +N G
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVETV 337
Score = 44.2 bits (104), Expect = 1e-05
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFI-NKMLDRDVGMYEALASNEHG 185
V GYP + + ++ + + + NG TL I N + D Y +A N+ G
Sbjct: 550 VAGYPIDSIVWERDNRALPINRKQ--KVFPNG--TLIIENVERNSDQATYTCVAKNQEG 604
Score = 36.8 bits (85), Expect = 0.003
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 129 YGYPKPKVSFYFND-ELIEMGGRYDSSYTRNGQATLFINKMLDRD-VGMYEALASNEHGT 186
VS++ ++ E G YD Y L I ++ D Y+ +
Sbjct: 166 VADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTG 225
Query: 187 ARQRVSS 193
+ ++
Sbjct: 226 ETRLSAT 232
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 52.8 bits (127), Expect = 5e-09
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFW--FVYGYPKPKVSFYFNDELIEM-GGRYDSSYTR 157
+AP + V YP+P++S+ N LI++ RY S
Sbjct: 5 PKAPVITTPLETVDA---LVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRY--SIRE 59
Query: 158 NGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
NG L I + D D G+Y A+N G A +
Sbjct: 60 NG-QLLTILSVEDSDDGIYCCTANNGVGGAVESC 92
Score = 47.8 bits (114), Expect = 3e-07
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
G PKP VS+ D + R + +G +L I+ + D G Y +A N GTA
Sbjct: 124 TMGNPKPSVSWIKGDSALRENSRI--AVLESG--SLRIHNVQKEDAGQYRCVAKNSLGTA 179
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 52.5 bits (126), Expect = 7e-09
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 103 APRF-LNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
P + Q+ + E + G P+P +S++ N +LIE +Y +
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY---ILKGSNT 58
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRV 191
L + +++ D G Y A+N+ G ++
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGEDEKQA 88
Score = 49.0 bits (117), Expect = 1e-07
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 14/98 (14%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWF--VYGYPKPKVSFYFNDELIEM-------GGRYDS 153
P + +++T Y EN + G P P++++ + GR
Sbjct: 95 QPHIIQLKNETTY----ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRI-E 149
Query: 154 SYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
++G ++L I + D G Y+ A++ G ++ +
Sbjct: 150 VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSM 187
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 51.2 bits (122), Expect = 9e-09
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMG------------ 148
+ F+ Q +Q + L G P P++ ++F +
Sbjct: 19 SHMAGFV-QAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDR 77
Query: 149 GRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
++Y ++ +T+ I+ +++ D G YE ASN+
Sbjct: 78 VHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRN 116
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 53.4 bits (128), Expect = 9e-09
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
AP++ + + ++ ++ V G P P V + N + + GGR + +
Sbjct: 308 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS-GGRATVT---DS--G 361
Query: 163 LFINKMLDRDVGMYEALASNEHGTARQRV 191
L I + + D G Y A+NEHG
Sbjct: 362 LVIKGVKNGDKGYYGCRATNEHGDKYFET 390
Score = 47.2 bits (112), Expect = 9e-07
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKP-KVSFYFNDELIEMGGRYDSSYTRNGQ 160
+ P +Q + + +N + L + G + K S+ + + + G
Sbjct: 5 KYPVLKDQPAEVLF-RENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG- 62
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTARQRV 191
+L + D G Y+ A G A RV
Sbjct: 63 -SLVFLRPQASDEGHYQCFAETPAGVASSRV 92
Score = 43.7 bits (103), Expect = 1e-05
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 2/101 (1%)
Query: 92 LERPPREGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRY 151
GY P D + + ++ P +++ N + +
Sbjct: 201 GVTKDNSGYKGEPVPQYVSKD-MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPED 259
Query: 152 D-SSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
+ + R L L D G+Y N G ++
Sbjct: 260 RITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS 300
Score = 36.0 bits (83), Expect = 0.005
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 10/69 (14%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTR-----NGQATLFINKMLD---RDVGMYEALAS 181
YPKP +++ + R +G L+ + D+ Y A
Sbjct: 127 AYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG--NLYFTIVTKEDVSDIYKYVCTAK 184
Query: 182 NEHGTARQR 190
N
Sbjct: 185 NAAVDEEVV 193
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 52.1 bits (125), Expect = 1e-08
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
PRF D Q G+ +S G P+PK+ + + + + +
Sbjct: 6 PPRFTRTPVD-QTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64
Query: 163 LFI-NKMLDRDVGMYEALASNEHGTARQRVS 192
L I RD +YE +ASN G
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTR 95
Score = 45.6 bits (108), Expect = 2e-06
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 3/98 (3%)
Query: 95 PPREGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYD-- 152
+ P + + +++ G P P+++++ + ++
Sbjct: 100 REDQIPRGFPTIDMGPQL-KVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRI 158
Query: 153 SSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQR 190
L I + + D G YE +A+N GT
Sbjct: 159 KQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSA 196
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 51.3 bits (123), Expect = 1e-08
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
G P+P +S++ N +LIE +Y + L + +++ D G Y A+N+ G
Sbjct: 122 ASGSPEPAISWFRNGKLIEENEKY---ILKGSNTELTVRNIINSDGGPYVCRATNKAGED 178
Query: 188 RQRVS 192
++
Sbjct: 179 EKQAF 183
Score = 48.2 bits (115), Expect = 2e-07
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 7/89 (7%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFW--FVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ 160
F ++ + V P P VS+ +++E + + N
Sbjct: 2 MLTFREVVSPQEF---KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN- 57
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTARQ 189
L I + D G+Y E
Sbjct: 58 -NLQILNINKSDEGIYRCEGRVEARGEID 85
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 52.3 bits (125), Expect = 2e-08
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 3/99 (3%)
Query: 93 ERPPREGYAQAPRFLNQEHDTQYGIK-NENSSLFW--FVYGYPKPKVSFYFNDELIEMGG 149
E AP + E + + +++ + G P P +S+ N
Sbjct: 109 EAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH 168
Query: 150 RYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTAR 188
R R+ Q +L + ++ D G Y + N+ G+ R
Sbjct: 169 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIR 207
Score = 43.1 bits (101), Expect = 2e-05
Identities = 14/102 (13%), Positives = 22/102 (21%), Gaps = 6/102 (5%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFWFVY-GYPKPKVSFYFNDELIEMGGRYDSSYTRNG 159
A+ P + + + L G P + + + R G
Sbjct: 5 AEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERV-----LVG 59
Query: 160 QATLFINKMLDRDVGMYEALASNEHGTARQRVSSGNPAQGSG 201
L + D G Y A SG
Sbjct: 60 PQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSG 101
Score = 38.8 bits (90), Expect = 6e-04
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 12/77 (15%)
Query: 128 VYGYPKPKVSFY----FNDELIEMGGRY--------DSSYTRNGQATLFINKMLDRDVGM 175
VY +P + + N + G ++ T L ++ + D G
Sbjct: 246 VYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGE 305
Query: 176 YEALASNEHGTARQRVS 192
Y LA N G +
Sbjct: 306 YTCLAGNSIGFSHHSAW 322
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 51.4 bits (123), Expect = 2e-08
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 6/101 (5%)
Query: 92 LERPPREGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRY 151
+ P R + Q D Y + +N +L F G P P + + E +
Sbjct: 102 IPIPERTTKPYPADIVVQFKD-VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEI 160
Query: 152 DSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
A L I + D G+YE A N G + +
Sbjct: 161 -----STSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQAR 196
Score = 32.2 bits (73), Expect = 0.062
Identities = 9/63 (14%), Positives = 16/63 (25%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189
+P + +E + L+I + D G Y S+ T
Sbjct: 35 HFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSV 94
Query: 190 RVS 192
Sbjct: 95 FSK 97
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 52.0 bits (124), Expect = 2e-08
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 3/91 (3%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
Q+ + E + + +L V + F + +D G
Sbjct: 47 QSSGTV-YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFD--LQNRGVV 103
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRVS 192
++ I KM + G Y +E +
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTILFT 134
Score = 42.7 bits (100), Expect = 3e-05
Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNG-----QATLFINKMLDRDVGMYEALASN 182
V+ +++ ++ +E G ++ S F++ + D G Y +S
Sbjct: 252 VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK 311
Query: 183 EHGTA 187
+
Sbjct: 312 HPSQS 316
Score = 42.4 bits (99), Expect = 5e-05
Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
YP+ + ++ F+ + + ++ G Y A N+
Sbjct: 350 FKAYPQIRCTWTFSRKSFP-----CEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQF 404
Query: 188 RQRVS 192
+ +
Sbjct: 405 TKMFT 409
Score = 38.1 bits (88), Expect = 0.001
Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 7/90 (7%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
+ + + +L P+P V + D E + +
Sbjct: 139 NTLLYTLRRPYFR--KMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKE-- 194
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRV 191
++++ D A NE G R+
Sbjct: 195 EKVLHELFGTD---IRCCARNELGRECTRL 221
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 52.2 bits (125), Expect = 2e-08
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 7/87 (8%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWF--VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ 160
AP +L++ + G PKP V + N E ++ +
Sbjct: 312 APYWLDEPKNLIL---APGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD- 367
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTA 187
T+ +Y+ SNEHG
Sbjct: 368 -TIIFRDTQISSRAVYQCNTSNEHGYL 393
Score = 51.0 bits (122), Expect = 6e-08
Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
Q P Q +N + G P P + N + S R
Sbjct: 15 QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS-G 73
Query: 162 TLFINKM----LDRDVGMYEALASNEHGTARQR 190
TL I+ + G Y+ A N+ GTA
Sbjct: 74 TLVIDFRSGGRPEEYEGEYQCFARNKFGTALSN 106
Score = 44.5 bits (105), Expect = 9e-06
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 94 RPPREGYAQAPRFLNQEHDTQYGIKNENSSLFW--FVYGYPKPKVSFYFNDELIEMGGRY 151
R + P F+ + + L G P P +++Y +
Sbjct: 210 LTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS---- 265
Query: 152 DSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
D + N L I + + D G Y LASN+ G+ R +S
Sbjct: 266 DKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTIS 306
Score = 38.3 bits (89), Expect = 0.001
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLF-WFVYGYPKPKVSFYFND-ELIEMGGRYDSSYTRN 158
+++P + + D + +L G P P + + + E I R S N
Sbjct: 113 SKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRV--SQGHN 170
Query: 159 GQATLFINKMLDRDV-GMYEALASNEHGTARQR 190
G L+ + ++ +D+ Y A Q+
Sbjct: 171 G--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQ 201
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 51.0 bits (122), Expect = 2e-08
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 3/98 (3%)
Query: 96 PREGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSS- 154
PR + AP+ Q Y + ++ V+ YP +S++ + +L+ +
Sbjct: 12 PRGSHMYAPKL--QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKI 69
Query: 155 YTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
Y + L + + D G Y A N G
Sbjct: 70 YNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFI 107
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 51.8 bits (124), Expect = 3e-08
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 99 GYAQAPRFLNQEHDTQYGIKNENSSLFW--FVYGYPKPKVSFYFNDELIEMGGRYDSSYT 156
G P F+ + + + +E + V G PKP + + N +++G D Y+
Sbjct: 1 GPGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGM--DFRYS 58
Query: 157 RNGQATLFINKMLDRDVGMYEALASNEHGTARQR 190
+ L N +D G Y+ +A+N GT R
Sbjct: 59 VVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSR 92
Score = 51.0 bits (122), Expect = 5e-08
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWF--VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ 160
P ++ +D S+FW G PKP + N + + R G
Sbjct: 295 QPNWVQIINDIHV---AMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE---QG- 347
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTA 187
TL I + D GMY+ +A N+HG
Sbjct: 348 -TLNITIVNLSDAGMYQCVAENKHGVI 373
Score = 44.4 bits (105), Expect = 7e-06
Identities = 21/99 (21%), Positives = 29/99 (29%), Gaps = 6/99 (6%)
Query: 94 RPPREGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFND-ELIEMGGRYD 152
R P+ Q +T K L F G P P + + D + I
Sbjct: 195 RNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIA-----R 249
Query: 153 SSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
+ L I D G YE +A N G +
Sbjct: 250 KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKG 288
Score = 42.1 bits (99), Expect = 4e-05
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLF-WFVYGYPKPKVSFYFNDE-LIEMGGRYDSSYTRN 158
A F + T + + L + ++ FN+ + R+ S T N
Sbjct: 99 AYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN 158
Query: 159 GQATLFINKMLDRDVGMYEALASNEHGTARQRVSS 193
L+I K+ DVG Y + +N +
Sbjct: 159 ----LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPP 189
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 49.3 bits (118), Expect = 3e-08
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSS--LFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRN 158
A+ P+ H Q I+ L G P+P+V + ++ R T +
Sbjct: 19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRV-HVRTSD 76
Query: 159 GQATLFINKMLDRDVGMYEALASNEHGTA 187
F+ + D G YE E+
Sbjct: 77 FDTVFFVRQAARSDSGEYELSVQIENMKD 105
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 50.9 bits (121), Expect = 6e-08
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V + F + +D G ++ I KM + G Y +E
Sbjct: 72 VDAPGNISCLWVFKHSSLNCQPHFD--LQNRGVVSMVILKMTETQAGEYLLFIQSEATNY 129
Query: 188 RQRVS 192
+
Sbjct: 130 TILFT 134
Score = 41.6 bits (97), Expect = 8e-05
Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
YP+ + ++ F+ + + ++ G Y A N+
Sbjct: 350 FKAYPQIRCTWTFSRKSFP-----CEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQF 404
Query: 188 RQRVS 192
+ +
Sbjct: 405 TKMFT 409
Score = 41.6 bits (97), Expect = 8e-05
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 130 GYPKPKVSFYFNDELIEMGGR-----YDSSYTRNGQATLFINKMLDRDVGMYEALASNEH 184
+++ ++ +E G Y ++ T F++ + D G Y +S
Sbjct: 254 VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHP 313
Query: 185 GTA 187
+
Sbjct: 314 SQS 316
Score = 38.9 bits (90), Expect = 6e-04
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 6/90 (6%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
+ ++N+ +L P+P V + D E + + +
Sbjct: 138 RNTLLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK 196
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRV 191
L + A NE G R+
Sbjct: 197 VL-----HELFGTDIRCCARNELGRECTRL 221
Score = 33.9 bits (77), Expect = 0.031
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 128 VYGYPKPKVSFYF--------NDELIEMGGRYDSSYTRNGQAT--LFINKMLDRDVGMYE 177
GYP P ++ +E+ E ++ GQ +N + +
Sbjct: 431 SDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVK 490
Query: 178 ALASNEHGTARQRVS 192
A N GT+ + +
Sbjct: 491 CCAYNSLGTSCETIL 505
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 47.8 bits (114), Expect = 8e-08
Identities = 8/73 (10%), Positives = 19/73 (26%), Gaps = 2/73 (2%)
Query: 129 YGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTAR 188
+ + + + R+ ++ + + L + + D G A
Sbjct: 34 HESASDPAMWTVGGKTVGSSSRFQATR-QGRKYILVVREAAPSDAGEVVFSVRGLTSKAS 92
Query: 189 QRVSSGNPAQGSG 201
V SG
Sbjct: 93 LIV-RERSGPSSG 104
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 50.5 bits (120), Expect = 9e-08
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
AP + Q E+ + G P P++ ++ ++E + ++G
Sbjct: 666 APTIT-GNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI---VLKDGNRN 721
Query: 163 LFINKMLDRDVGMYEALASNEHGTAR 188
L I ++ D G+Y A + G A+
Sbjct: 722 LTIRRVRKEDEGLYTCQACSVLGCAK 747
Score = 49.8 bits (118), Expect = 2e-07
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATL 163
F + E + GYP P++ +Y N +E + + L
Sbjct: 330 VAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV------L 383
Query: 164 FINKMLDRDVGMYEALASNEHGTARQRVS 192
I ++ +RD G Y + +N +Q
Sbjct: 384 TIMEVSERDTGNYTVILTNPISKEKQSHV 412
Score = 40.9 bits (95), Expect = 1e-04
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 9/74 (12%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRY---------DSSYTRNGQATLFINKMLDRDVGMYEA 178
+ F + + + S + +TL I+ + D G+Y
Sbjct: 248 ARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTC 307
Query: 179 LASNEHGTARQRVS 192
AS+ T +
Sbjct: 308 AASSGLMTKKNSTF 321
Score = 40.5 bits (94), Expect = 2e-04
Identities = 15/110 (13%), Positives = 29/110 (26%), Gaps = 20/110 (18%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDS-------- 153
+ + D Q + E+ SL+ +++Y +
Sbjct: 548 TRGPEITLQPDMQP-TEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNL 606
Query: 154 -----------SYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
S + N + + +D G Y LA + R V
Sbjct: 607 DTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVV 656
Score = 40.5 bits (94), Expect = 2e-04
Identities = 16/97 (16%), Positives = 25/97 (25%), Gaps = 3/97 (3%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
PR Q+ N++L G + N E
Sbjct: 30 DLPRLSIQKDIL---TIKANTTLQITCRGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCK 86
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRVSSGNPAQ 198
TL I K++ D G Y+ + V +
Sbjct: 87 TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRS 123
Score = 30.9 bits (69), Expect = 0.26
Identities = 4/37 (10%), Positives = 11/37 (29%)
Query: 152 DSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTAR 188
+ + + + I + GM A + +
Sbjct: 174 GNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQ 210
Score = 30.1 bits (67), Expect = 0.51
Identities = 9/75 (12%), Positives = 22/75 (29%)
Query: 118 KNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYE 177
++ S+ V + IE+ + + + +Y+
Sbjct: 470 PSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYK 529
Query: 178 ALASNEHGTARQRVS 192
A N+ G + +S
Sbjct: 530 CEAVNKVGRGERVIS 544
Score = 27.4 bits (60), Expect = 4.2
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 172 DVGMYEALASNEHGTARQRVS 192
V ++ + + VS
Sbjct: 8 AVALWLCVETRAASVGLPSVS 28
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 50.1 bits (119), Expect = 1e-07
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 127 FVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGT 186
F K+ +Y + L++ S L ++ + D G Y + + H
Sbjct: 148 FTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT--HLLVHDVALEDAGYYRCVLTFAHEG 205
Query: 187 ARQRVS 192
+ ++
Sbjct: 206 QQYNIT 211
Score = 49.3 bits (117), Expect = 2e-07
Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 8/110 (7%)
Query: 90 FDLERPPREGYAQAPRFLNQEHDTQYGIKNE-------NSSLFWFVYGYPKPKVSFYFND 142
F L+ G A++ RF + + ++ ++ E + + P+ ++++ ND
Sbjct: 4 FTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKND 63
Query: 143 ELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+ G ++ L++ L D G Y N + +
Sbjct: 64 SARTVPGEEETRMWAQD-GALWLLPALQEDSGTYVCTTRNASYCDKMSIE 112
Score = 34.7 bits (79), Expect = 0.015
Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 13/79 (16%)
Query: 127 FVYGYPKPKVSFYFNDEL----------IEMGGRYDSSYTR--NGQATLFINKMLDRDVG 174
G P + ++ ++ + G R + S + L + + D+
Sbjct: 252 LGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLH 311
Query: 175 M-YEALASNEHGTARQRVS 192
M ++ + N R +
Sbjct: 312 MDFKCVVHNTLSFQTLRTT 330
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 49.9 bits (119), Expect = 1e-07
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFW--FVYGYPKPKVSFYFNDELIEMGGRYDSSYTRN 158
+ P F Q T + + + P + N ++MG DS Y
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGP--DSRYRLV 59
Query: 159 GQATLFINKMLDRDVGMYEALASNEHGTARQR 190
+ N + +D G Y+ +A+N GT R
Sbjct: 60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSR 91
Score = 49.1 bits (117), Expect = 2e-07
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWF--VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ 160
P +L+ DT+ + S L W G P+P V + + + + R + S G
Sbjct: 294 QPDWLDVITDTEA---DIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS---GG- 346
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTA 187
L +K++ D GMY+ +A N+HGT
Sbjct: 347 -ELRFSKLVLEDSGMYQCVAENKHGTV 372
Score = 42.9 bits (101), Expect = 2e-05
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 7/103 (6%)
Query: 90 FDLERPPREGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGG 149
L + AP + Y + + +L F +G P P++ + D
Sbjct: 193 SQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ---- 248
Query: 150 RYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+S + + L I + D G YE A N G +
Sbjct: 249 ---TSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR 288
Score = 41.8 bits (98), Expect = 7e-05
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 8/97 (8%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLF-WFVYGYPKPKVSFYFNDE---LIEMGGRYDSSYT 156
F +E D + YP + N+ + G R+ S
Sbjct: 98 GFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS--Q 155
Query: 157 RNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSS 193
G L+I K D+G Y A++ + V S
Sbjct: 156 TTG--NLYIAKTEASDLGNYSCFATSHIDFITKSVFS 190
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 48.7 bits (116), Expect = 2e-07
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 96 PREGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSY 155
P G Q+PR + D KNE ++L V G P+P + ++ + E + +
Sbjct: 2 PLAGQYQSPRIIEHPTD-LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRV 60
Query: 156 T-RNG--QATLFINKMLDRDVGMYEALASNEHGTARQR 190
++G + ++D G Y +A N G A R
Sbjct: 61 QFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSR 98
Score = 41.8 bits (98), Expect = 4e-05
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRY----DSSYTRNGQATLFINKMLDRDVGMYEALASNE 183
G P+P + + + ++ S L I+ + D G Y+ +A N
Sbjct: 133 PKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNL 192
Query: 184 HGTAR 188
GT
Sbjct: 193 VGTRE 197
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 47.0 bits (112), Expect = 2e-07
Identities = 9/64 (14%), Positives = 22/64 (34%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
+ V ++ + + + G L + ++ +D G A ++ +A
Sbjct: 37 ISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQRASA 96
Query: 188 RQRV 191
RV
Sbjct: 97 ALRV 100
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 49.1 bits (117), Expect = 2e-07
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSS-YTRNGQATLFINKMLDRDVGMYEALASNEHGT 186
G+P+P +S+ + E IE D + + L I + D Y +A N+ G
Sbjct: 220 ADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGE 279
Query: 187 ARQRV 191
+
Sbjct: 280 QDASI 284
Score = 42.9 bits (101), Expect = 2e-05
Identities = 8/65 (12%), Positives = 14/65 (21%), Gaps = 2/65 (3%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V P + + + + D + L I + D G Y
Sbjct: 124 VVSSLPPTIIWKHKGRDVILKK--DVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE 181
Query: 188 RQRVS 192
Sbjct: 182 INFKD 186
Score = 35.6 bits (82), Expect = 0.006
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 128 VYGYPK-PKVSFYFND--ELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEH 184
V G K +S++ + +L R + + +TL I D G+Y+ + + E
Sbjct: 26 VAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAED 85
Query: 185 GTA 187
GT
Sbjct: 86 GTQ 88
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 49.1 bits (117), Expect = 2e-07
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFW--FVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ 160
P FLN + E+ + + V G P P V++ N +++ +
Sbjct: 312 PPWFLNHPSNLY---AYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYF--QIVGGS- 365
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTAR 188
L I ++ D G Y+ +A NE G A+
Sbjct: 366 -NLRILGVVKSDEGFYQCVAENEAGNAQ 392
Score = 48.7 bits (116), Expect = 3e-07
Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 94 RPPREGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDS 153
P + FL + + I+ +++ L V GYP P ++ +E+I++ +
Sbjct: 214 SDPGL--HRQLYFLQRPSN-VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKK-- 268
Query: 154 SYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
Y+ G + L I+ + D D G Y + + ++
Sbjct: 269 -YSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAE 306
Score = 44.8 bits (106), Expect = 6e-06
Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ 160
A RFL+Q + L V G P P + + N + + DS
Sbjct: 119 AGPLRFLSQTESITA-FMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPG-DSRVVVLPS 176
Query: 161 ATLFINKMLDRDVGMYEALASNEHGT 186
L I+++ D G+Y A N T
Sbjct: 177 GALQISRLQPGDSGVYRCSARNPAST 202
Score = 37.5 bits (87), Expect = 0.002
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYG-YPKPKVSFYFNDELIEMGGRYDSSYTRNGQ 160
++ F+++ D ++ N L P + + + ++ +G NG
Sbjct: 20 RSLHFVSEPSDAVT-MRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNG- 77
Query: 161 ATLFINKML-----DRDVGMYEALASNEHGTARQ 189
+L I +L D G+Y+ AS +
Sbjct: 78 -SLLIQNILHSRHHKPDEGLYQCEASLGDSGSII 110
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 48.2 bits (114), Expect = 4e-07
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 10/104 (9%)
Query: 99 GYAQAPRFLN----QEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSS 154
G A+ +N ++ + + + V G P P + + FN ++ +
Sbjct: 237 GRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTE 296
Query: 155 YTRNGQA------TLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+ L +N+ + G Y LA+N G A +
Sbjct: 297 FLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM 340
Score = 38.2 bits (88), Expect = 0.001
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 2/65 (3%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V G + + + +E S N D + A N+ G A
Sbjct: 182 VEGRGLEQAGWILTE--LEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRA 239
Query: 188 RQRVS 192
V
Sbjct: 240 EVSVQ 244
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 47.9 bits (114), Expect = 4e-07
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
G P+P +S++ N +LIE +Y + L + +++ D G Y A+N+ G
Sbjct: 218 ASGSPEPAISWFRNGKLIEENEKY---ILKGSNTELTVRNIINSDGGPYVCRATNKAGED 274
Query: 188 RQRVS 192
++
Sbjct: 275 EKQAF 279
Score = 46.0 bits (109), Expect = 2e-06
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 7/90 (7%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFW--FVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNG 159
Q F ++ + V P P VS+ +++E + + N
Sbjct: 97 QKLTFREVVSPQEF---KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN 153
Query: 160 QATLFINKMLDRDVGMYEALASNEHGTARQ 189
L I + D G+Y E
Sbjct: 154 --NLQILNINKSDEGIYRCEGRVEARGEID 181
Score = 44.8 bits (106), Expect = 6e-06
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 2/86 (2%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
+ E+ G P+ + E I R ++
Sbjct: 4 LLQVT-ISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKE-GVRSR 61
Query: 163 LFINKMLDRDVGMYEALASNEHGTAR 188
L I D G+Y A++ G +
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQ 87
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 45.4 bits (108), Expect = 4e-07
Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 3/63 (4%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ-ATLFINKMLDRDVGMYEALASNEHGTAR 188
P + + + +G+ L ++ G A+N A
Sbjct: 30 SEPDVHGQWKLKGQPLAASPDC--EIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAAN 87
Query: 189 QRV 191
+V
Sbjct: 88 LKV 90
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 45.4 bits (108), Expect = 5e-07
Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
+ P V + + + I +YD A L I +D G Y TA
Sbjct: 32 LSRAGTP-VHWLKDRKAIRKSQKYDVVC-EGTMAMLVIRGASLKDAGEYTCEVEASKSTA 89
Query: 188 RQRV-------SSG 194
V SSG
Sbjct: 90 SLHVEEKASGPSSG 103
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 45.5 bits (108), Expect = 6e-07
Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 10/97 (10%)
Query: 99 GYAQAPRFLNQEHDTQYGIKNENSSLFW--FVYGYPKPKVSFYFNDE-LIEMGGRYDSSY 155
G + P L + + + G P P +S+ R +
Sbjct: 4 GSSGPPIILQGPANQT---LAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRA--TI 58
Query: 156 TRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
G TL I + D G Y +A++ G
Sbjct: 59 QEQG--TLQIKNLRISDTGTYTCVATSSSGETSWSAV 93
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 47.5 bits (113), Expect = 8e-07
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYD-SSYTRNGQA 161
AP+F+ Y + ++ V P + + + ++ + +Y+ +
Sbjct: 100 APKFI-SNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKM 158
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRV 191
L I D D G Y A+N GT Q
Sbjct: 159 ILEIAPTSDNDFGRYNCTATNHIGTRFQEY 188
Score = 38.6 bits (90), Expect = 7e-04
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTR------NGQATLFINKMLDRDVGMYEALAS 181
G P P++++ + S R +G ++L I + D G Y+ A+
Sbjct: 24 AEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAA 83
Query: 182 NEHGTA 187
+ G
Sbjct: 84 SRIGGH 89
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 44.2 bits (105), Expect = 1e-06
Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 1/72 (1%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189
+P V++ + G++ L I+ + D Y A+
Sbjct: 33 EHPAATVTWRKGLLELRASGKH-QPSQEGLTLRLTISALEKADSDTYTCDIGQAQSRAQL 91
Query: 190 RVSSGNPAQGSG 201
V SG
Sbjct: 92 LVQGRRSGPSSG 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 46.4 bits (110), Expect = 2e-06
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
KV ++E + G S RNG LF K+ D G+Y A E
Sbjct: 270 TKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG--DLFFKKVQVEDGGVYTCYAMGETFNE 327
Query: 188 RQRVS 192
V
Sbjct: 328 TLSVE 332
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 43.9 bits (104), Expect = 2e-06
Identities = 12/60 (20%), Positives = 23/60 (38%)
Query: 132 PKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
+V + N + I+M G + + TL I++ D Y+ + E + V
Sbjct: 43 HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTELFV 102
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 46.1 bits (109), Expect = 3e-06
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
+ P FL + + + + + G P P++ + +D + +G
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG-- 59
Query: 162 TLFINKML------DRDVGMYEALASNEHGTARQR 190
L + +Y LA N+ G+ R
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR 94
Score = 45.7 bits (108), Expect = 3e-06
Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 16/87 (18%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFW--FVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ 160
+ + G P VS+ + + I
Sbjct: 307 PLSAKIDPPTQTV---DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES---------- 353
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTA 187
L I + D GMY+ N+ +A
Sbjct: 354 -VLRIESVKKEDKGMYQCFVRNDRESA 379
Score = 42.6 bits (100), Expect = 3e-05
Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 1/92 (1%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYD-SSYTRNGQ 160
APR + SL G+P P +Y E + +
Sbjct: 210 SAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVS 269
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
TL I + D G Y + +N G
Sbjct: 270 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 301
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 44.1 bits (104), Expect = 3e-06
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKP-KVSFYFNDELIEMG--GRYDSSYTRNG 159
P TQ+ + E + F+ P P ++++ + + ++E G GRY
Sbjct: 14 PPII--SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 71
Query: 160 Q---ATLFINKMLDRDVG-MYEALASNEHGTARQRVS 192
+ +TL I+ ++ D +Y A N G+ + +
Sbjct: 72 EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIR 108
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 44.8 bits (106), Expect = 3e-06
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWF--VYGYPKPKVSFYFNDELIEMGGRYDSSY---TR 157
PR + D I ++ G P P + +Y E +E S+
Sbjct: 9 PPRIVEHPSDL---IVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 158 NGQATLFINKMLDR-----DVGMYEALASNEHGTARQR 190
+G +LF +++ D G+Y +A N G A
Sbjct: 66 SG--SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH 101
Score = 44.8 bits (106), Expect = 4e-06
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
G+P+P +S+ + ++ R G L I D G Y + +N G
Sbjct: 136 PRGHPEPTISWKKDGSPLDDKDER--ITIRGG--KLMITYTRKSDAGKYVCVGTNMVGER 191
Query: 188 RQRV 191
V
Sbjct: 192 ESEV 195
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 45.0 bits (106), Expect = 3e-06
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 130 GYPKPKVSFYFNDELIEMGGRY-----DSSYTRNGQ-ATLFINKMLDRDVGMYEALASNE 183
G P + +++ + ++ + +SSY N L + + D G Y A N
Sbjct: 134 GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNG 193
Query: 184 HGTAR 188
+GT
Sbjct: 194 YGTPM 198
Score = 41.9 bits (98), Expect = 4e-05
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYD-------SSYTRNGQATLFINKMLDRDVGMYEALASN 182
G+ P+V + F+ Y+ + + D G Y + S
Sbjct: 30 GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE 89
Query: 183 EHGTARQRVS 192
E G + V
Sbjct: 90 EGGNSYGEVK 99
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 44.8 bits (106), Expect = 4e-06
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
G P P + + N ++M S ++G L I + D G YE +A N GT
Sbjct: 134 AIGNPTPNIYWIKNQTKVDMSNPRYS--LKDG--FLQIENSREEDQGKYECVAENSMGTE 189
Query: 188 R 188
Sbjct: 190 H 190
Score = 44.0 bits (104), Expect = 8e-06
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 7/94 (7%)
Query: 101 AQAPRFLNQEHDTQYGIKNENSSLFW--FVYGYPKPKVSFYFNDELIEM-GGRYDSSYTR 157
A P + + + + G P P + + N + + RY
Sbjct: 4 AHPPEIIRKPQNQGV---RVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 60
Query: 158 NGQATLFINKM-LDRDVGMYEALASNEHGTARQR 190
G + L I + RD YE +A N G A
Sbjct: 61 GGISILRIEPVRAGRDDAPYECVAENGVGDAVSA 94
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 42.8 bits (101), Expect = 4e-06
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189
PK +V +Y N + I +Y + Q LFIN D Y A +E +
Sbjct: 33 ADPKLEVKWYKNGQEIRPSTKY-IFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCSTEL 91
Query: 190 RV----SSG 194
V SSG
Sbjct: 92 FVRSGPSSG 100
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 43.2 bits (102), Expect = 4e-06
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 128 VYGYPKPKVSFYFNDELIEM-GGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGT 186
G P P + + + L+ R NG L I D G Y +AS G
Sbjct: 32 ATGSPVPTILWRKDGVLVSTQDSRI--KQLENG--VLQIRYAKLGDTGRYTCIASTPSGE 87
Query: 187 ARQRVS 192
A
Sbjct: 88 ATWSAY 93
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 43.7 bits (103), Expect = 7e-06
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSY----TRN 158
AP + + + +++ ++ GYP P+ + + + S +
Sbjct: 92 APDITGHKRS-ENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKE 150
Query: 159 GQATLFI-NKMLDRDVGMYEALASNEHGTARQRV 191
L I N + D G YE A+N G+A
Sbjct: 151 NYTELNIVNLQITEDPGEYECNATNSIGSASVST 184
Score = 35.2 bits (81), Expect = 0.006
Identities = 12/89 (13%), Positives = 20/89 (22%), Gaps = 9/89 (10%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSF--YFNDELIEMGGRYDSSYTRNGQ 160
PR + E +L + + N + + S+
Sbjct: 3 EPRIVTSEEV-IIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNME---- 57
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTARQ 189
INK D G Y +
Sbjct: 58 --YRINKPRAEDSGEYHCVYHFVSAPKAN 84
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 41.6 bits (98), Expect = 1e-05
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 132 PKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
K +Y N + R S+ L I+ + D G Y + + ++
Sbjct: 35 EKVTGKWYKNGVEVRPSKRITISH-VGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKL 93
Query: 192 S 192
+
Sbjct: 94 N 94
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 42.1 bits (99), Expect = 1e-05
Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTAR 188
P +V + + E + + L + + D G Y +E +
Sbjct: 38 CRPWAEVRWTKDGEEVVESPALLLQK-EDTVRRLVLPAVQLEDSGEYLCEIDDESASFT 95
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 41.6 bits (98), Expect = 1e-05
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYT---RNGQATLFINKMLDRDVGMYEALASNEHGT 186
+V + N + + + Y + L + ++ D G Y+ + +
Sbjct: 33 SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCE 92
Query: 187 ARQRV 191
A V
Sbjct: 93 AELIV 97
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 43.1 bits (101), Expect = 1e-05
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 3/74 (4%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLD---RDVGMYEALASNEH 184
V +P P V + + + + + +L + L + N+
Sbjct: 128 VNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDK 187
Query: 185 GTARQRVSSGNPAQ 198
A SG +Q
Sbjct: 188 EEAHGVYVSGYLSQ 201
Score = 26.5 bits (58), Expect = 4.8
Identities = 8/80 (10%), Positives = 21/80 (26%), Gaps = 16/80 (20%)
Query: 128 VYGYPKPKVSFY-------------FNDELIEMGGRYDSSYT---RNGQATLFINKMLDR 171
V P+ +VS++ + ++I + + + L +
Sbjct: 18 VSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANIS 77
Query: 172 DVGMYEALASNEHGTARQRV 191
G Y ++
Sbjct: 78 HDGNYLCRMKLGETEVTKQE 97
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 44.2 bits (104), Expect = 1e-05
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 12/85 (14%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
P Y N SL P + S+ + + +
Sbjct: 380 GPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ------------E 427
Query: 163 LFINKMLDRDVGMYEALASNEHGTA 187
LFI+ + +++ G+Y A+N
Sbjct: 428 LFISNITEKNSGLYTCQANNSASGH 452
Score = 42.6 bits (100), Expect = 4e-05
Identities = 14/87 (16%), Positives = 22/87 (25%), Gaps = 12/87 (13%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
P EN +L P + S++ N +
Sbjct: 202 GPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ------------E 249
Query: 163 LFINKMLDRDVGMYEALASNEHGTARQ 189
LFI + + G Y A N +
Sbjct: 250 LFIPNITVNNSGSYTCQAHNSDTGLNR 276
Score = 42.6 bits (100), Expect = 4e-05
Identities = 15/90 (16%), Positives = 23/90 (25%), Gaps = 12/90 (13%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
P + N +L P P+ S+ N +
Sbjct: 558 GPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQ------------V 605
Query: 163 LFINKMLDRDVGMYEALASNEHGTARQRVS 192
LFI K+ + G Y SN +
Sbjct: 606 LFIAKITPNNNGTYACFVSNLATGRNNSIV 635
Score = 40.7 bits (95), Expect = 2e-04
Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 4/91 (4%)
Query: 100 YAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNG 159
Y + P+ ++++ + + ++ N++ + + R NG
Sbjct: 107 YPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRL---QLSNG 162
Query: 160 QATLFINKMLDRDVGMYEALASNEHGTARQR 190
TL + + D Y+ N R
Sbjct: 163 NRTLTLFNVTRNDTASYKCETQNPVSARRSD 193
Score = 39.2 bits (91), Expect = 5e-04
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 127 FVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGT 186
++ N++ + + R N TL + + DVG YE NE
Sbjct: 312 EPEIQNTT-YLWWVNNQSLPVSPRL---QLSNDNRTLTLLSVTRNDVGPYECGIQNELSV 367
Query: 187 ARQR 190
Sbjct: 368 DHSD 371
Score = 37.6 bits (87), Expect = 0.002
Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 4/91 (4%)
Query: 98 EGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTR 157
A+ P+ ++++ + + ++ N + + + R S
Sbjct: 461 TVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQLSN-G 518
Query: 158 NGQATLFINKMLDRDVGMYEALASNEHGTAR 188
N TL + + D Y N R
Sbjct: 519 NR--TLTLFNVTRNDARAYVCGIQNSVSANR 547
Score = 33.0 bits (75), Expect = 0.051
Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 3/71 (4%)
Query: 123 SLFWFVYGYPKPK---VSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEAL 179
W+ + + + G Y A+L I ++ D G Y
Sbjct: 30 GYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLH 89
Query: 180 ASNEHGTARQR 190
+
Sbjct: 90 VIKSDLVNEEA 100
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 41.6 bits (98), Expect = 1e-05
Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 132 PKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTAR 188
+ +V++Y + + + + L + + + G Y A + + R
Sbjct: 38 AQTEVTWYKDGKKLSSSSKVRVEA-VGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 43.0 bits (101), Expect = 2e-05
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA-------TLFINKMLDRDVGMYEALASN 182
G P + S++ + + + N L + + D G Y A N
Sbjct: 131 GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQN 190
Query: 183 EHGTARQRVS 192
+GTA + +
Sbjct: 191 GYGTAMRSEA 200
Score = 40.7 bits (95), Expect = 1e-04
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 8/96 (8%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYD-------SSYT 156
+ D Q +NE+ L G+ P+V + F Y+ +
Sbjct: 2 GSVYTAQSDVQ-VPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 157 RNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+ + + + +D G Y + S E G VS
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVS 96
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 40.8 bits (96), Expect = 3e-05
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 132 PKPKVSFYFNDELIEMGGRYDSSYTRNGQ-ATLFINKMLDRDVGMYEALASNEHGTARQR 190
V ++ N E I G + G+ L I D Y + + +A+
Sbjct: 34 DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLS 93
Query: 191 V------SSG 194
V SSG
Sbjct: 94 VDLKSGPSSG 103
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 40.8 bits (96), Expect = 3e-05
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 132 PKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
V + E + GGRY S + L I+ + D G Y + E +A V
Sbjct: 34 KVAPVEWKKGPETLRDGGRY-SLKQDGTRCELQIHDLSVADAGEYSCMCGQERTSATLTV 92
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 41.3 bits (97), Expect = 4e-05
Identities = 10/86 (11%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGR-YDSSYTRNGQA 161
+ + + + L V G +P + + + +++ + Y ++
Sbjct: 2 GLKLMGAPVKLT-VSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 162 TLFINKMLDRDVGMYEALASNEHGTA 187
L + + D G Y + T
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETE 86
Score = 29.4 bits (66), Expect = 0.51
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 12/86 (13%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKP-KVSFYFNDELIEMGGRYDSSYTRNGQA 161
P F + D N L G P+P + ++ I +
Sbjct: 98 VPFFTVEPKDLAV-PPNAPFQLSCEAVGPPEPVTIVWWRGTTKI----------GGPAPS 146
Query: 162 TLFINKMLDRDVGMYEALASNEHGTA 187
+N M+ A N G A
Sbjct: 147 PSVLNVTGVTQSTMFSCEAHNLKGLA 172
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 42.0 bits (98), Expect = 5e-05
Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189
PK+ +Y + + + + D+ + + L + + ++ G Y AS + +
Sbjct: 135 NNELPKLQWYKDCKPLLL----DNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQY 190
Query: 190 RVS 192
++
Sbjct: 191 PIT 193
Score = 37.4 bits (86), Expect = 0.002
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 12/101 (11%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGR-----------YD 152
P ++ ++T L V G + +N +I+
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268
Query: 153 SSYTRNGQATLFINKMLDRDV-GMYEALASNEHGTARQRVS 192
+ L I+++ R + A N HG +
Sbjct: 269 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQ 309
Score = 36.2 bits (83), Expect = 0.004
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 132 PKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
K +++Y +D + +S + L+ D G Y + N R ++
Sbjct: 34 HKGTITWYKDDSKTPVSTE-QASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKI 92
Query: 192 S 192
S
Sbjct: 93 S 93
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 42.1 bits (98), Expect = 5e-05
Identities = 13/92 (14%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFW-FVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
P + + ++ L+ +Y +++Y N++ + + G Y+++G
Sbjct: 128 PPSCIPETYE-LGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTK---YSQSG-Q 182
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRVSS 193
L I+ D G Y+ + + +
Sbjct: 183 NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVV 214
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 41.4 bits (97), Expect = 6e-05
Identities = 11/89 (12%), Positives = 27/89 (30%), Gaps = 11/89 (12%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
+ + + + + L G+P + ++ ++ I G +
Sbjct: 17 RGSKITVNPES-KAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT----------S 65
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQR 190
L N + +D G Y +N +
Sbjct: 66 ELIFNAVHVKDAGFYVCRVNNNFTFEFSQ 94
Score = 41.0 bits (96), Expect = 8e-05
Identities = 10/100 (10%), Positives = 24/100 (24%), Gaps = 15/100 (15%)
Query: 91 DLERPPREGYAQAPRFLNQEHDTQYGIKNENSSLFW--FVYGYPKPKVSFYFNDELIEMG 148
+R + + + S+L G P P ++ N+ +
Sbjct: 106 SFQRSVDGVSESKLQICVEPTSQK---LMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE 162
Query: 149 GRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTAR 188
+ + + G Y N+ +
Sbjct: 163 TK----------KLYMVPYVDLEHQGTYWCHVYNDRDSQD 192
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 40.6 bits (95), Expect = 9e-05
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWF--VYGYPK-PKVSFYFND--ELIEMGGRYDSSYT 156
+ + + + S F+ V G K +S++ + +L R +
Sbjct: 1 RVLQVDIVPSQGE---ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWN 57
Query: 157 RNGQATLFINKMLDRDVGMYEALASNEHGTA 187
+ +TL I D G+Y+ + + E GT
Sbjct: 58 DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ 88
Score = 40.2 bits (94), Expect = 1e-04
Identities = 8/64 (12%), Positives = 13/64 (20%), Gaps = 2/64 (3%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V P + + + + N L I + D G Y
Sbjct: 124 VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN--YLQIRGIKKTDEGTYRCEGRILARGE 181
Query: 188 RQRV 191
Sbjct: 182 INFK 185
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 39.2 bits (92), Expect = 1e-04
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
+ P V + + + ++ G +Y L + + +D G Y ++ +A
Sbjct: 32 LSSVAAP-VKWCYGNNVLRPGDKYSLRQ-EGAMLELVVRNLRPQDSGRYSCSFGDQTTSA 89
Query: 188 RQRV 191
V
Sbjct: 90 TLTV 93
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 38.9 bits (91), Expect = 1e-04
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 7/71 (9%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189
++Y + + +E + L + + +D G +E
Sbjct: 35 SRVDFPATWYKDGQKVEESELLVVKM-DGRKHRLILPEAKVQDSGEFECRTEGVSAFFGV 93
Query: 190 RV------SSG 194
V SSG
Sbjct: 94 TVQDPSGPSSG 104
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 1e-04
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 26/98 (26%)
Query: 2 REKLNPERPKFEPYLPPGVPFHPDKSFYF-----PRDFDLERPPREGYA--------QAP 48
+E++ K +LP K ++ + PP+ Y +AP
Sbjct: 346 QEQVQDYVNKTNSHLPA------GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 49 RFLNQEHDTQEKLNPERPKFEP-YLPPGVPFHPDKSFY 85
L+Q ++ + + KF +LP PFH S
Sbjct: 400 SGLDQ---SRIPFSERKLKFSNRFLPVASPFH---SHL 431
Score = 29.2 bits (65), Expect = 0.98
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 8/41 (19%)
Query: 16 LPPGVPFHPDKSFYFPRDFD----LERP---PREGY-AQAP 48
L + D F + + LE P P + Y P
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Score = 29.2 bits (65), Expect = 0.98
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 8/41 (19%)
Query: 72 LPPGVPFHPDKSFYFPRDFD----LERP---PREGY-AQAP 104
L + D F + + LE P P + Y P
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 38.5 bits (90), Expect = 1e-04
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 132 PKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
KV + I +Y + + TL + ++ D G Y +A + +V
Sbjct: 35 AGVKVRWQRGGSDISASNKYGLAT-EGTRHTLTVREVGPADQGSYAVIAGSSKVKFDLKV 93
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 38.5 bits (90), Expect = 2e-04
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 7/69 (10%)
Query: 132 PKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
+ N ++ R + L I L D G Y + T +V
Sbjct: 33 ENIPGKWTKNGLPVQESDRLKVVQ-KGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKV 91
Query: 192 ------SSG 194
SSG
Sbjct: 92 HVISGPSSG 100
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 40.8 bits (95), Expect = 2e-04
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 11/76 (14%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGR---------YDSSYTRNG--QATLFINKMLDRDVGMY 176
G+P+P + +YF + +SS G I+ + G
Sbjct: 430 AAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTV 489
Query: 177 EALASNEHGTARQRVS 192
E A N+ G +
Sbjct: 490 ECKAYNDVGKTSAYFN 505
Score = 39.6 bits (92), Expect = 3e-04
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 128 VYGYPKPK-VSFYFNDELI----EMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASN 182
+PKP+ + + + E + ++ + L + ++ + G Y L SN
Sbjct: 337 YEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSN 396
Query: 183 EHGTARQRV 191
A
Sbjct: 397 SDVNAAIAF 405
Score = 38.9 bits (90), Expect = 6e-04
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 128 VYGYPKP-KVSFYFNDELIEMGGRYDS----SYTRNGQATLFINKMLDRDVGMYEALASN 182
+ ++ + ++ +Y+S + QATL I+ D G++ A+N
Sbjct: 235 IKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANN 294
Query: 183 EHGTARQRVS 192
G+A +
Sbjct: 295 TFGSANVTTT 304
Score = 26.2 bits (57), Expect = 8.1
Identities = 5/32 (15%), Positives = 8/32 (25%)
Query: 156 TRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
N Q K + G Y + +
Sbjct: 75 NENKQNEWITEKAEATNTGKYTCTNKHGLSNS 106
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 38.6 bits (90), Expect = 2e-04
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTR---NG 159
PR + D K E ++L G P P + +Y E +E S+ +G
Sbjct: 9 PPRIVEHPSD-LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 160 QATLFI-----NKMLDRDVGMYEALASNEHGTARQRV 191
+LF + D G+Y +A N G A
Sbjct: 68 --SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD 102
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 38.5 bits (89), Expect = 2e-04
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 10/94 (10%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFY--FNDELIEMGG-------RYDSS 154
P+ Q Q I + S ++F ++E ++ R
Sbjct: 11 PQITVQPET-QSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69
Query: 155 YTRNGQATLFINKMLDRDVGMYEALASNEHGTAR 188
L + + G Y+ + SN G++
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSY 103
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 37.7 bits (88), Expect = 4e-04
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 132 PKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTAR 188
V ++ E + G R+ + L I ++ D G Y + E +A
Sbjct: 45 KMAPVEWWKGHETLRDGDRHSLRQ-DGARCELQIRGLVAEDAGEYLCMCGKERTSAM 100
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 38.5 bits (89), Expect = 5e-04
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 119 NENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEA 178
++ +L + + FN + +++ R S + L I+ + D G Y+
Sbjct: 125 LDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLS---QNNSILRIDPIKREDAGEYQC 180
Query: 179 LASNEHGTAR 188
SN R
Sbjct: 181 EISNPVSVRR 190
Score = 26.6 bits (58), Expect = 5.0
Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 118 KNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYE 177
K +++ + + + G Y +L + +D+G+Y
Sbjct: 35 KGNTTAIDKEIARFVPNS-------NMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYT 87
Query: 178 ALASNEHGTARQR 190
++E+ Q
Sbjct: 88 LDMTDENYRRTQA 100
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 36.6 bits (85), Expect = 6e-04
Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V P P++ + + + + L + ++ +D G Y +A++
Sbjct: 34 VPAQPSPQIHWMKDGVPLPLPPS----------PVLILPEIGPQDQGTYSCVATHSSHGP 83
Query: 188 R 188
+
Sbjct: 84 Q 84
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 38.0 bits (88), Expect = 6e-04
Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 11/65 (16%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
P V GG+ TL ++++ +D G +
Sbjct: 121 SPPGSSPSVQCRSPRGKNIQGGK-----------TLSVSQLELQDSGTWTCTVLQNQKKV 169
Query: 188 RQRVS 192
++
Sbjct: 170 EFKID 174
Score = 34.2 bits (78), Expect = 0.016
Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 16/80 (20%)
Query: 128 VYGYPKPKVSFYFNDELI--------------EMGGRYDS--SYTRNGQATLFINKMLDR 171
+ + ++++ ++ R DS S G L I +
Sbjct: 19 ASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIE 78
Query: 172 DVGMYEALASNEHGTARQRV 191
D Y ++ + V
Sbjct: 79 DSDTYICEVEDQKEEVQLLV 98
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 38.7 bits (89), Expect = 7e-04
Identities = 8/69 (11%), Positives = 19/69 (27%), Gaps = 5/69 (7%)
Query: 124 LFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNE 183
+ + KP +++Y I+ L L + G Y + +
Sbjct: 145 VDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM-----NLSFLIALISNNGNYTCVVTYP 199
Query: 184 HGTARQRVS 192
++
Sbjct: 200 ENGRTFHLT 208
Score = 34.8 bits (79), Expect = 0.013
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 4/69 (5%)
Query: 128 VYGYPKPKVSFYFN----DELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNE 183
+ +Y+ D + R + + L+ L D G Y + N
Sbjct: 42 TAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNT 101
Query: 184 HGTARQRVS 192
++
Sbjct: 102 TYCSKVAFP 110
Score = 33.7 bits (76), Expect = 0.026
Identities = 8/72 (11%), Positives = 20/72 (27%), Gaps = 10/72 (13%)
Query: 130 GYPKPKVSFYFNDELIEM---------GGRYDSSYTRNGQATLFINKMLDRDVG-MYEAL 179
+ +V + + + + + + L I K+ D+ Y
Sbjct: 256 MDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCH 315
Query: 180 ASNEHGTARQRV 191
A + G +
Sbjct: 316 ARSAKGEVAKAA 327
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 36.5 bits (85), Expect = 8e-04
Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 10/60 (16%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
G P P ++ N+ + + + + G Y N+ +
Sbjct: 27 AVGSPIPHYQWFKNELPLTHETK----------KLYMVPYVDLEHQGTYWCHVYNDRDSQ 76
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 36.3 bits (84), Expect = 0.001
Identities = 11/63 (17%), Positives = 16/63 (25%), Gaps = 6/63 (9%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189
P + + D NG L I + D G Y SN +
Sbjct: 37 KSPAYTLVWTRLHNGKLPSRAMDF----NG--ILTIRNVQPSDAGTYVCTGSNMFAMDQG 90
Query: 190 RVS 192
+
Sbjct: 91 TAT 93
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 37.2 bits (85), Expect = 0.002
Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 131 YPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDR-DVGMYEALASNEHGTAR 188
YP ++ + ND+ I + + L + + + G Y
Sbjct: 138 YPGSEILWQHNDKNIGGDEDD--KNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 194
Score = 27.9 bits (61), Expect = 1.8
Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 11/72 (15%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189
++++ + ++I + + GMY+ S Q
Sbjct: 26 DAEAKNITWFKDGKMIGFLTED--------KKKWNLGSNAKDPRGMYQCKGSQNKSKPLQ 77
Query: 190 ---RVSSGNPAQ 198
R+ S + A+
Sbjct: 78 VYYRMGSADDAK 89
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 35.7 bits (82), Expect = 0.003
Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 13/72 (18%)
Query: 128 VYGYP---KPKVSFYFNDEL---------IEMGGRYDSSYTRNGQATLFINKMLDRDVGM 175
V KP + ++ + +++ ++ +R + I K D G
Sbjct: 31 VKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH-SRVYTFEMQIIKAKDNFAGN 89
Query: 176 YEALASNEHGTA 187
Y + +
Sbjct: 90 YRCEVTYKDKFD 101
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 36.6 bits (84), Expect = 0.003
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 4/69 (5%)
Query: 128 VYGYPKPKVSFYFNDE----LIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNE 183
V G + + + L+E + + ++ L I D G Y +
Sbjct: 205 VIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTES 264
Query: 184 HGTARQRVS 192
+ +
Sbjct: 265 VNDHQDEKA 273
Score = 28.9 bits (64), Expect = 1.0
Identities = 7/60 (11%), Positives = 14/60 (23%), Gaps = 2/60 (3%)
Query: 134 PKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVSS 193
V + + T + L + + D G Y ++ G
Sbjct: 26 APVVWERMSQEPPQEMAKAQDGTFSS--VLTLTNLTGLDTGEYFCTHNDSRGLETDERKR 83
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 36.0 bits (83), Expect = 0.003
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 4/70 (5%)
Query: 123 SLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASN 182
+ W K F E + Y +NG TL I + D +Y+ +
Sbjct: 32 DIKWEKTSDKKKIAQFRKEKETFKEKDTYKL--FKNG--TLKIKHLKTDDQDIYKVSIYD 87
Query: 183 EHGTARQRVS 192
G
Sbjct: 88 TKGKNVLEKI 97
Score = 32.2 bits (73), Expect = 0.069
Identities = 7/65 (10%), Positives = 20/65 (30%), Gaps = 12/65 (18%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V P+++ Y + + +++ R + +K ++ A N+
Sbjct: 124 VMNGTDPELNLYQDGKHLKLSQR------------VITHKWTTSLSAKFKCTAGNKVSKE 171
Query: 188 RQRVS 192
Sbjct: 172 SSVEP 176
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 34.8 bits (80), Expect = 0.004
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 132 PKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
+++ + + R TR + + + D G+Y + S+ G+
Sbjct: 36 DVQSINWLRDGVQLVESNR-----TRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYF 90
Query: 192 S 192
S
Sbjct: 91 S 91
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 36.2 bits (83), Expect = 0.004
Identities = 6/63 (9%), Positives = 15/63 (23%), Gaps = 3/63 (4%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189
G + + + M + + + G Y N G+ +
Sbjct: 148 GSLPLQFEWQKLSDSQTMPTPW---LAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQC 204
Query: 190 RVS 192
+
Sbjct: 205 MLR 207
Score = 31.6 bits (71), Expect = 0.10
Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 119 NENSSLFWFVYGY---PKPKVSFYFNDELI------EMGGRYD--SSYTRNGQATLFINK 167
+ W + +V ++ + I ++ GR S+ ++G A++ +
Sbjct: 31 QGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTN 90
Query: 168 MLDRDVGMYEALASNEHGTARQRV 191
+ D+G Y+ G A ++
Sbjct: 91 LQLSDIGTYQCKVKKAPGVANKKF 114
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 36.3 bits (83), Expect = 0.004
Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 11/65 (16%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
P V GG+ TL ++++ +D G +
Sbjct: 120 SPPGSSPSVQCRSPRGKNIQGGK-----------TLSVSQLELQDSGTWTCTVLQNQKKV 168
Query: 188 RQRVS 192
++
Sbjct: 169 EFKID 173
Score = 34.0 bits (77), Expect = 0.024
Identities = 12/77 (15%), Positives = 17/77 (22%), Gaps = 7/77 (9%)
Query: 123 SLFWFVYGYPKPKVSFYF---NDELI----EMGGRYDSSYTRNGQATLFINKMLDRDVGM 175
L+W K F N E+ + TL G
Sbjct: 212 ELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGN 271
Query: 176 YEALASNEHGTARQRVS 192
+ G Q V+
Sbjct: 272 LTLALEAKTGKLHQEVN 288
Score = 32.5 bits (73), Expect = 0.090
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 16/93 (17%)
Query: 115 YGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGG--------------RYDS--SYTRN 158
G K + L + + ++++ +G R DS S
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 159 GQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
G L I + D Y ++ + V
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV 97
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 34.2 bits (78), Expect = 0.007
Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 11/71 (15%)
Query: 128 VYGYP---KPKVSFYFNDEL---IEMGGRY-----DSSYTRNGQATLFINKMLDRDVGMY 176
V G P V ++ + ++G ++ L I G Y
Sbjct: 28 VAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSY 87
Query: 177 EALASNEHGTA 187
S +
Sbjct: 88 RCEVSTKDKFD 98
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 35.3 bits (81), Expect = 0.008
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 128 VYGYPKPK-VSFYFNDELIEMGGRYDSSYTR-NGQATLFINKMLDRDVGMYEALASNEHG 185
V N+ + + + D R TL ++++ + G Y +ASN G
Sbjct: 210 ASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQG 269
Query: 186 TARQRVS 192
+
Sbjct: 270 KHSTSMF 276
Score = 29.5 bits (66), Expect = 0.57
Identities = 10/85 (11%), Positives = 23/85 (27%), Gaps = 6/85 (7%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGY-PKPKVS-FYFNDELIEMGGRYDSSYTRNGQA 161
R N +++++ L + + VS + Y S++
Sbjct: 89 ARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNY--SFSPWH-- 144
Query: 162 TLFINKMLDRDVGMYEALASNEHGT 186
I++ Y+ A
Sbjct: 145 GFTIHRAKFIQSQDYQCSALMGGRK 169
Score = 27.2 bits (60), Expect = 3.2
Identities = 5/41 (12%), Positives = 12/41 (29%)
Query: 152 DSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+ Y+ + L N ++ G Y + +
Sbjct: 42 WTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIH 82
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 34.2 bits (78), Expect = 0.008
Identities = 7/70 (10%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 128 VYGYPKPKVS--------FYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEAL 179
+ + N+ + +Y + Q ++ + + +D G+Y+ L
Sbjct: 25 TSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCL 84
Query: 180 ASNEHGTARQ 189
++ + ++
Sbjct: 85 HYSDSVSTKE 94
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 33.5 bits (77), Expect = 0.009
Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
+ +++ + + R R + + + D G+Y + S+ G+
Sbjct: 27 LRDDV-QSINWLRDGVQLAESNRT-----RITGEEVEVQDSVPADSGLYACVTSSPSGSD 80
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 34.0 bits (77), Expect = 0.011
Identities = 12/79 (15%), Positives = 19/79 (24%), Gaps = 1/79 (1%)
Query: 110 EHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKML 169
+ G K + L E GR T ++ +
Sbjct: 53 QKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRV-RVETTKDRSIFTVEGAE 111
Query: 170 DRDVGMYEALASNEHGTAR 188
D G+Y N G +
Sbjct: 112 KEDEGVYTVTVKNPVGEDQ 130
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 33.9 bits (77), Expect = 0.011
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 9/74 (12%)
Query: 128 VYGYPKPKVSFYFN---------DELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEA 178
+ F + + S + +TL I+ + D G+Y
Sbjct: 32 ARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTC 91
Query: 179 LASNEHGTARQRVS 192
AS+ T +
Sbjct: 92 AASSGLMTKKNSTF 105
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 34.9 bits (80), Expect = 0.012
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 9/63 (14%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189
V +Y N + + + N L I K G Y +H
Sbjct: 109 DKLVYNVLYYRNGKAFK-------FFHWNS--NLTILKTNISHNGTYHCSGMGKHRYTSA 159
Query: 190 RVS 192
+S
Sbjct: 160 GIS 162
Score = 32.2 bits (73), Expect = 0.077
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 126 WFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185
+ P ++ F F + GR SS I D G+Y A+ E G
Sbjct: 195 KLLLQRPGLQLYFSFYMGSKTLRGRNTSS-------EYQILTARREDSGLYWCEAATEDG 247
Query: 186 TARQR 190
+R
Sbjct: 248 NVLKR 252
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 34.9 bits (80), Expect = 0.012
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 128 VYGYPKPKVSFYFNDE-LIEMGGRYD-SSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185
+ +E+ D L +N + +D G+Y +ASN+ G
Sbjct: 210 ATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVG 269
Query: 186 TARQRVS 192
T ++
Sbjct: 270 TRTATMN 276
Score = 31.8 bits (72), Expect = 0.11
Identities = 10/84 (11%), Positives = 17/84 (20%), Gaps = 4/84 (4%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGY-PKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
N ++ + + L + K VS + Y +
Sbjct: 89 AHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKT---VYFFSPWRG 145
Query: 163 LFINKMLDRDVGMYEALASNEHGT 186
I K D Y
Sbjct: 146 FIIRKAKVLDSNTYVCKTMVNGRE 169
Score = 30.3 bits (68), Expect = 0.33
Identities = 5/44 (11%), Positives = 12/44 (27%)
Query: 148 GGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
Y + + +TL ++ G Y + +
Sbjct: 38 ISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTI 81
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 34.2 bits (78), Expect = 0.013
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 128 VYGYPKP-KVSFYFNDELIEMGGRYDSS-----YTRNGQATLFI-NKMLDRDVGMYEALA 180
P ++Y + + S + G++ L I N ++ D G Y
Sbjct: 107 SESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNG 166
Query: 181 SNEHGTARQRVS 192
++ G+ + ++
Sbjct: 167 TSSKGSDQAIIT 178
Score = 29.2 bits (65), Expect = 0.58
Identities = 7/68 (10%), Positives = 14/68 (20%), Gaps = 11/68 (16%)
Query: 128 VYGYPKPKVSF--YFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEH- 184
+ +++ D G Y + E
Sbjct: 22 LNDSATEVTGHRWLKGGVVLKEDALPGQK--------TEFKVDSDDQWGEYSCVFLPEPM 73
Query: 185 GTARQRVS 192
GTA ++
Sbjct: 74 GTANIQLH 81
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 34.7 bits (80), Expect = 0.016
Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 88 RDFDLERPPREGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELI-- 145
+DF P + R +++ + + G P P + + + +
Sbjct: 369 KDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVS 428
Query: 146 -EMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+ GR + +G TL + +D G Y +A+N G
Sbjct: 429 AKSNGRL--TVFPDG--TLEVRYAQVQDNGTYLCIAANAGGNDSMPAH 472
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 34.3 bits (79), Expect = 0.018
Identities = 13/61 (21%), Positives = 20/61 (32%)
Query: 132 PKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
VS+ + + G Y TL + +D GMY + SN G
Sbjct: 368 SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASA 427
Query: 192 S 192
+
Sbjct: 428 T 428
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 33.0 bits (75), Expect = 0.035
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 12/94 (12%)
Query: 109 QEHDTQYGIKNENSSLFWFVYGYPKPK----VSFYFNDELIEMGGRYDSSYTRNGQ---- 160
++ T +G +L + + V + L+ R + ++G
Sbjct: 1 RDSGTVWGALGHGINLN--IPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL 58
Query: 161 --ATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
L I + D G Y + +GT +
Sbjct: 59 ANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKA 92
Score = 28.4 bits (63), Expect = 1.1
Identities = 7/64 (10%), Positives = 14/64 (21%), Gaps = 12/64 (18%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V ++ Y E + + SY ++ A N
Sbjct: 119 VLEGTDVELKLYQGKEHLRSLRQKTMSYQ------------WTNLRAPFKCKAVNRVSQE 166
Query: 188 RQRV 191
+
Sbjct: 167 SEME 170
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 32.9 bits (75), Expect = 0.037
Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 2/68 (2%)
Query: 120 ENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ-ATLFINKMLDRDVGMYEA 178
L W + + + ++ N + + + L I + D G Y
Sbjct: 28 SYQRLTWL-HTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM 86
Query: 179 LASNEHGT 186
+E
Sbjct: 87 RMLHETED 94
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 33.6 bits (77), Expect = 0.040
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 132 PKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
P V + + + + TL + +L D G+Y + +N G +
Sbjct: 378 PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASA 437
Query: 192 S 192
Sbjct: 438 Y 438
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 32.3 bits (73), Expect = 0.048
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 132 PKPKVSFYFNDELIEMGGRYDSSYTRN-GQATLFINKMLDRDVGMYEALASNEHGTAR 188
KVS+ FN++ I G +Y RN G +F+ K+ D D G Y + T
Sbjct: 66 SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATGH 123
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 33.0 bits (74), Expect = 0.052
Identities = 12/83 (14%), Positives = 22/83 (26%), Gaps = 3/83 (3%)
Query: 112 DTQYGIKNENSSLFW-FVYGYPKPKVSFYFND-ELIEMGGRYD-SSYTRNGQATLFINKM 168
G + N + F V GR + ++G ++ I +
Sbjct: 238 HCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGL 297
Query: 169 LDRDVGMYEALASNEHGTARQRV 191
D G Y A ++
Sbjct: 298 RKEDAGRYLCGAHSDGQLQEGSP 320
Score = 29.6 bits (65), Expect = 0.72
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 124 LFWFVYGYPKPKVSFYFNDELIEMGGRY--DSSYTRNGQATLFINKMLDRDVGMYEALAS 181
+ G V GR D T ++ IN++ D G Y A
Sbjct: 146 SLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAG 205
Query: 182 NEHGTARQRVS 192
++ + ++
Sbjct: 206 DDSNSNKKNAD 216
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 32.8 bits (74), Expect = 0.053
Identities = 6/66 (9%), Positives = 16/66 (24%), Gaps = 8/66 (12%)
Query: 128 VYGYPKP-KVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGT 186
P+P ++ + + L I + +N G
Sbjct: 241 ARSNPEPTGYNWSTTMGPLPPFAVAQGA-------QLLIRPVDKPINTTLICNVTNALGA 293
Query: 187 ARQRVS 192
+ ++
Sbjct: 294 RQAELT 299
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 32.1 bits (73), Expect = 0.065
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 9/59 (15%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTAR 188
P KV+F+ N + + + T I + G Y + +
Sbjct: 112 DKPLVKVTFFQNGKSQK---------FSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFS 161
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 32.2 bits (73), Expect = 0.072
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 10/95 (10%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLF-WFVYGYPKPKVSFYFNDELIEMGGRY--------D 152
+ F+ G + +L P+V + + +++E+ D
Sbjct: 1 EESPFV-GNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 153 SSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
+ L I + D G Y+ L H T
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTF 94
Score = 31.0 bits (70), Expect = 0.19
Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 14/88 (15%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWF--VYGYPKP-KVSFYFNDELIEMGGRYDSSYTRNG 159
P FL + D N+ G P+P + + + + + +
Sbjct: 106 LPYFLEEPEDRTV---AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRS--- 159
Query: 160 QATLFINKMLDRDVGMYEALASNEHGTA 187
L + + + A N G
Sbjct: 160 ---LHVPGL--NKTSSFSCEAHNAKGVT 182
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 32.1 bits (72), Expect = 0.076
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 9/74 (12%)
Query: 128 VYGYPKPKVSFY---------FNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEA 178
+ F + S + +TL I+ + D G+Y
Sbjct: 129 ARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTC 188
Query: 179 LASNEHGTARQRVS 192
AS+ T +
Sbjct: 189 AASSGLMTKKNSTF 202
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 32.2 bits (72), Expect = 0.077
Identities = 11/86 (12%), Positives = 16/86 (18%), Gaps = 20/86 (23%)
Query: 128 VYGYPKPKVSFYFNDELIEMG--------------------GRYDSSYTRNGQATLFINK 167
V++Y E + +G L I
Sbjct: 160 CTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRA 219
Query: 168 MLDRDVGMYEALASNEHGTARQRVSS 193
D G + G SS
Sbjct: 220 AKITDAGRVWCELATGQGELDADRSS 245
Score = 26.8 bits (58), Expect = 4.4
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 119 NENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDS--SYTRNGQATLFINKMLDRDVGMY 176
+ ++ +F Y + + F +D E G + S TL + + +D G Y
Sbjct: 46 DRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRY 105
Query: 177 EALASNEHGTARQRVSSGN 195
+ + + +
Sbjct: 106 WCQVAQWSIRTEFGLDAKS 124
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 32.0 bits (72), Expect = 0.088
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 128 VYGYPKP-KVSFYFNDELIEMGGRYDSSYTRNG------QATLFINKMLDRDVGMYEALA 180
+ + + + + + G Q TL I+ D G++ A
Sbjct: 212 IKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYA 271
Query: 181 SNEHGTARQRVS 192
+N G+A +
Sbjct: 272 NNTFGSANVTTT 283
Score = 27.8 bits (61), Expect = 2.2
Identities = 7/37 (18%), Positives = 11/37 (29%)
Query: 151 YDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
Y + N + K G Y SN ++
Sbjct: 47 YFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSS 83
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 32.1 bits (72), Expect = 0.11
Identities = 9/91 (9%), Positives = 20/91 (21%), Gaps = 2/91 (2%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEM--GGRYDSSYTRNGQA 161
+ ++ G + + + +R A
Sbjct: 164 RTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 223
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+ + RD G Y + E G +
Sbjct: 224 SFNVVNTTKRDAGKYRCMIRTEGGVGISNYA 254
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 31.6 bits (71), Expect = 0.14
Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 7/91 (7%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKP-KVSFYFNDELIEMGGRYDSSYTRNGQA 161
P + D + ++ + L P + + + + +
Sbjct: 231 EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLP------KGVEAQNRT 284
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRVS 192
F + G Y A+N GT +V
Sbjct: 285 LFFKGPINYSLAGTYICEATNPIGTRSGQVE 315
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 31.1 bits (70), Expect = 0.16
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 8/74 (10%)
Query: 118 KNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYE 177
NE S F + P++ + +L ++ + D G Y
Sbjct: 35 FNETSLAFIVPHETKSPEIHVT--------NPKQGKRLNFTQSYSLQLSNLKMEDTGSYR 86
Query: 178 ALASNEHGTARQRV 191
A S +
Sbjct: 87 AQISTKTSAKLSSY 100
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.33
Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 31/125 (24%)
Query: 78 FHPDKSFYFPRDFD---LERPPREGYAQAPRFLNQEHDTQYGIKNENSS---LFWFVYGY 131
F F +FD ++ P+ +E D K+ S LFW +
Sbjct: 25 FEDA----FVDNFDCKDVQDMPK------SILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 132 PKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
+ V + + L R + + + T + MY R R+
Sbjct: 75 QEEMVQKFVEEVL-----RINYKFLMSPIKTEQRQPSMMTR--MYI--------EQRDRL 119
Query: 192 SSGNP 196
+ N
Sbjct: 120 YNDNQ 124
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 29.8 bits (66), Expect = 0.55
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 132 PKPKVSFYFNDELIEMGGRYD-----SSYTRNGQATLFINKMLDRDVGMYEALASNEHGT 186
V FY+++ + GR+ T + +L + + D G+Y ++ +
Sbjct: 51 ASEYVLFYYSNLSVP-TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNES 109
Query: 187 ARQRVS 192
+
Sbjct: 110 MVMKKP 115
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 29.2 bits (65), Expect = 0.70
Identities = 8/66 (12%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKML---DRDVGMYEALASNEHGT 186
GYPK +V + +D + + G+ ++ ++ + + L ++
Sbjct: 142 GYPKAEVIWTSSDHQV-LSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPE 200
Query: 187 ARQRVS 192
Sbjct: 201 ENHTAE 206
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 28.6 bits (63), Expect = 1.2
Identities = 4/30 (13%), Positives = 9/30 (30%)
Query: 158 NGQATLFINKMLDRDVGMYEALASNEHGTA 187
+ + I + G+Y E +
Sbjct: 142 DTTQDITIQEFTADKNGVYTVKVWGESEDS 171
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 28.0 bits (62), Expect = 1.4
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 123 SLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASN 182
+ W K KV+ N E + Y +L I + D YE + N
Sbjct: 25 EVLWK---KQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81
Query: 183 EHGTAR 188
T +
Sbjct: 82 ITDTMK 87
>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419,
structural genomics, JCSG, PSI, protein structure
initiative; HET: NAD; 1.70A {Thermotoga maritima} SCOP:
c.2.1.3 d.81.1.3 PDB: 3cin_A*
Length = 394
Score = 28.6 bits (63), Expect = 1.5
Identities = 9/94 (9%), Positives = 20/94 (21%), Gaps = 2/94 (2%)
Query: 10 PKFEPYLPPGVPFHPDKSFYFPRDFDLERPPREGYAQAPRFLNQEHDTQEKLNPERPKFE 69
H P + + + + + + E
Sbjct: 87 DSLTSDPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTE 146
Query: 70 PYLPPGVPFHPDKSFYFPRDFDLERPPREGYAQA 103
++P G K+ + + YA A
Sbjct: 147 AFVPFGNKEDLLKA--IENNDKERLTATQVYAYA 178
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 28.5 bits (63), Expect = 1.5
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 14/65 (21%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
+G P P++ + G + TR+ G Y A + G
Sbjct: 209 AWGNPLPELKCLKDGTFPLPIGES-VTVTRD-------------LEGTYLCRARSTQGEV 254
Query: 188 RQRVS 192
+ V+
Sbjct: 255 TREVT 259
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 27.9 bits (62), Expect = 1.7
Identities = 8/59 (13%), Positives = 14/59 (23%), Gaps = 9/59 (15%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTAR 188
+ KV +Y + E ++ + I D G Y
Sbjct: 112 NWDVYKVIYYKDGEALK---------YWYENHNISITNATVEDSGTYYCTGKVWQLDYE 161
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 27.1 bits (60), Expect = 1.7
Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 8/65 (12%)
Query: 128 VYGYPKPKVS--------FYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEAL 179
V + YF+D+ R + + ++ ++ + D G Y
Sbjct: 30 VDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCS 89
Query: 180 ASNEH 184
Sbjct: 90 LFTMP 94
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 27.9 bits (63), Expect = 2.1
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 16/68 (23%)
Query: 88 RDFD-LERP-PREGYAQAPRFLNQEHDTQYG--------------IKNENSSLFWFVYGY 131
+ + PR +A+A R L +E G K S + FV Y
Sbjct: 258 ATWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRY 317
Query: 132 PKPKVSFY 139
P+ FY
Sbjct: 318 PRSVRPFY 325
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 27.3 bits (60), Expect = 2.6
Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 8/75 (10%)
Query: 119 NENSSLFWFVYGYPKPKVSFYFNDELIEMGGRY--DSSYTRNGQATLFINKMLDRDVGMY 176
E + L K ++ R G+A I + RD G Y
Sbjct: 29 RECTELEGIRASLQKV------ENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQY 82
Query: 177 EALASNEHGTARQRV 191
L + +
Sbjct: 83 RCLVICGAAWDYKYL 97
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 26.7 bits (58), Expect = 2.6
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 131 YPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHG 185
YP ++ + ND+ I + + +L L+ G Y
Sbjct: 31 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE-QSGYYVCYPRGSKP 84
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 26.8 bits (59), Expect = 2.8
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 118 KNENSSLFWFV-YGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMY 176
+ S+ WF P +V + + S + + QA L I + D +Y
Sbjct: 37 RLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIY 96
>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A
{Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A
1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A*
1yxw_A* 1yyn_A* 1diw_A*
Length = 452
Score = 27.7 bits (60), Expect = 3.1
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 108 NQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDS-------SYTRNGQ 160
+ + + + + ++L W + F D + + + R
Sbjct: 121 SLSIGSGWSVSLKGNNLIWTLKDSAGEVRQITFRDLPDKFNAYLANKWVFITITNDRLSS 180
Query: 161 ATLFINKMLD 170
A L+IN +L
Sbjct: 181 ANLYINGVLM 190
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 27.1 bits (59), Expect = 3.9
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 14/65 (21%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
+G P P++ + G + + T G Y A + G
Sbjct: 394 AWGNPLPELKCLKD-------GTFPLPIGESVTVTR-------DLEGTYLCRARSTQGEV 439
Query: 188 RQRVS 192
+ V+
Sbjct: 440 TREVT 444
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 27.1 bits (60), Expect = 4.6
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 103 AP-R-FLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEM 147
AP R F Q+ K N V+G + K+ + +E ++
Sbjct: 513 APFRSFW-QQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQA 558
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 26.9 bits (60), Expect = 5.6
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 11/63 (17%)
Query: 73 PPGVPFHPDKSFYFPRDFDLERPPREGYA----QAPRFLNQEHDTQYGIKNENSSLFWFV 128
P VP ++ P+ + P + + +AP D ++ FW V
Sbjct: 24 IPMVPAEVGRAVIDPKSYGTWEPLLDRFDALRAEAPVAKVVAPDDEHE-------PFWLV 76
Query: 129 YGY 131
+
Sbjct: 77 SSF 79
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 26.1 bits (58), Expect = 8.7
Identities = 8/59 (13%), Positives = 12/59 (20%), Gaps = 5/59 (8%)
Query: 73 PPGVPFHPDKSFYFPRDFDLERPPREGYAQAPRFLNQEHDTQYGIKNENSSLFWFVYGY 131
P VP +E E + + Q I + W
Sbjct: 16 PANVPEDRVYEIDMYALNGIEDGYHEAWKKV-----QHPGIPDLIWTPFTGGHWIATNG 69
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166,
structural genomics, JC protein structure initiative;
2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Length = 442
Score = 26.0 bits (58), Expect = 9.7
Identities = 7/22 (31%), Positives = 13/22 (59%), Gaps = 7/22 (31%)
Query: 139 YFNDE-----LIE--MGGRYDS 153
YF ++ ++E +GGR D+
Sbjct: 143 YFAEKNVDIAVLEVGLGGRLDA 164
>2wnf_A CMP-N-acetylneuraminate-beta-galactosamide-alpha-
2,3-sialyltransferase; glycosyltransferase, disulfide
bond, golgi apparatus, glycoprotein; HET: CG3 A2G GAL;
1.25A {Sus scrofa} PDB: 2wnb_A* 2wml_A
Length = 298
Score = 26.1 bits (56), Expect = 10.0
Identities = 8/80 (10%), Positives = 17/80 (21%)
Query: 52 NQEHDTQEKLNPERPKFEPYLPPGVPFHPDKSFYFPRDFDLERPPREGYAQAPRFLNQEH 111
+ L P + ++ Y P ++ + P F+
Sbjct: 155 ELAQEVSMILVPFKTTDLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHPAFIKYVF 214
Query: 112 DTQYGIKNENSSLFWFVYGY 131
D S +
Sbjct: 215 DRWLQGHGRYPSTGILSVIF 234
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.140 0.440
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,330,366
Number of extensions: 195112
Number of successful extensions: 914
Number of sequences better than 10.0: 1
Number of HSP's gapped: 759
Number of HSP's successfully gapped: 291
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.0 bits)