RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5280
(202 letters)
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR
{Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 53.7 bits (128), Expect = 2e-10
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 103 APRFLNQ---EHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNG 159
AP + N E G P P + + N + + R RN
Sbjct: 1 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60
Query: 160 QATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+L + ++ D G Y + NE+G+
Sbjct: 61 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 93
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 47.8 bits (113), Expect = 2e-08
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
AP++ + + ++ ++ V G P P V + N + + G +
Sbjct: 2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG------ 55
Query: 163 LFINKMLDRDVGMYEALASNEHGTARQRVS 192
L I + + D G Y A+NEHG
Sbjct: 56 LVIKGVKNGDKGYYGCRATNEHGDKYFETL 85
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules
[TaxId: 9606]}
Length = 98
Score = 47.6 bits (112), Expect = 3e-08
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 1/91 (1%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
+AP+ + Q + ++ V G P P+ +Y N IE R + +
Sbjct: 3 EAPKIFERIQS-QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC 61
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRVS 192
L I + D A N G
Sbjct: 62 ELVIRDVTGEDSASIMVKAINIAGETSSHAF 92
>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 97
Score = 45.7 bits (107), Expect = 2e-07
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 103 APRFLNQEHDTQY--GIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ 160
P F Q T + G E +L P + N ++MG Y
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDS--RYRLVAG 61
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTARQR 190
+ N + +D G Y+ +A+N GT R
Sbjct: 62 DLVISNPVKAKDAGSYQCVATNARGTVVSR 91
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 45.3 bits (106), Expect = 2e-07
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 120 ENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ-ATLFINKMLDRDVGMYEA 178
++ +L G+P+P +S+ + E IE D + + + L I + D Y
Sbjct: 21 QSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC 80
Query: 179 LASNEHGTARQRVS 192
+A N+ G +
Sbjct: 81 IAENKAGEQDASIH 94
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 44.6 bits (104), Expect = 5e-07
Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 12/101 (11%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDE------------LIEMGGRY 151
P + + VY +P + + + E +++
Sbjct: 5 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64
Query: 152 DSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+ T L+I + D G Y LA N G +
Sbjct: 65 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAW 105
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 44.0 bits (103), Expect = 5e-07
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
AP + Y + + +L F +G P P++ + D +S + +
Sbjct: 4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLD-------GSQTSKWLSSEPL 56
Query: 163 LFINKMLDRDVGMYEALASNEHGTARQRVS 192
L I + D G YE A N G +
Sbjct: 57 LHIQNVDFEDEGTYECEAENIKGRDTYQGR 86
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 44.1 bits (103), Expect = 7e-07
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATL 163
P+ + D + E+ LF V G ++ + I+ + NG L
Sbjct: 1 PQIIQFPEDQKV-RAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS-KL 58
Query: 164 FINKMLDRDVGMYEALASNEHGTARQRVS 192
I G Y L N+ G+ + +V+
Sbjct: 59 TILAARQEHCGCYTLLVENKLGSRQAQVN 87
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId:
9103]}
Length = 102
Score = 43.7 bits (102), Expect = 9e-07
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
P F D ++ + V GYP P+V ++ +D ++ + Y G +
Sbjct: 8 KPYFTKTILD-MEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 66
Query: 163 LFINKMLDRDVGMYEALASNEHGTARQRVS 192
L I+++ D Y A N G A
Sbjct: 67 LTISEVCGDDDAKYTCKAVNSLGEATCTAE 96
>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor
TrkA, different domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 43.0 bits (100), Expect = 2e-06
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 114 QYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSY------TRNGQATLFINK 167
++ + + + V G P P + + FN ++ + + L +N+
Sbjct: 10 HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQ 69
Query: 168 MLDRDVGMYEALASNEHGTARQRVS 192
+ G Y LA+N G A +
Sbjct: 70 PTHVNNGNYTLLAANPFGQASASIM 94
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein
phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 41.6 bits (96), Expect = 5e-06
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 8/90 (8%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWF--VYGYPKPKVSFY--FNDELIEMGGRYDSSYTR 157
+ P FL ++ N + G + D + +R
Sbjct: 1 RTPHFLRIQNVEV----NAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSR 56
Query: 158 NGQATLFINKMLDRDVGMYEALASNEHGTA 187
A+ + RD G Y + E G
Sbjct: 57 RFIASFNVVNTTKRDAGKYRCMIRTEGGVG 86
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 40.9 bits (95), Expect = 7e-06
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRN-GQATLFINKMLDRDVGMYEALASNEHGTAR 188
V ++ N E I G + + L I D Y + + +A+
Sbjct: 25 SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAK 84
Query: 189 QRV 191
V
Sbjct: 85 LSV 87
>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 97
Score = 40.7 bits (94), Expect = 1e-05
Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDE-LIEMGGRYDSSYTRNGQA 161
P++++++ + G + + ++ P +++ N + + + + R
Sbjct: 5 VPQYVSKDMMAKAG---DVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 61
Query: 162 TLFINKMLDRDVGMYEALASNEHGTAR 188
L L D G+Y N G +
Sbjct: 62 RLLFKTTLPEDEGVYTCEVDNGVGKPQ 88
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 40.3 bits (93), Expect = 1e-05
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATL 163
PRF+ + + T+ + ++++ + V P V+++ +D ++ +Y Y N L
Sbjct: 2 PRFIVKPYGTEV-GEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDY-GL 59
Query: 164 FINKMLDRDVGMYEALASNEHGTARQRVS 192
IN++ D G Y A N +GT + V
Sbjct: 60 TINRVKGDDKGEYTVRAKNSYGTKEEIVF 88
>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 39.1 bits (90), Expect = 3e-05
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
++ F + Y + + +V + N + I+M G + +
Sbjct: 4 KSTAFQKKLEPA-YQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKR 62
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRV 191
TL I++ D Y+ + E + V
Sbjct: 63 TLTISQCSLADDAAYQCVVGGEKCSTELFV 92
>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 39.2 bits (90), Expect = 3e-05
Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 114 QYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGR----YDSSYTRNGQATLFINKML 169
+ + + + + V G PKP + +++N ++ + L ++
Sbjct: 11 ESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPT 70
Query: 170 DRDVGMYEALASNEHGTARQRVS 192
+ G Y +A NE+G +++S
Sbjct: 71 HMNNGDYTLIAKNEYGKDEKQIS 93
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 39.2 bits (90), Expect = 4e-05
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 7/74 (9%)
Query: 126 WFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLF-------INKMLDRDVGMYEA 178
G P + S++ + + + N T+ + + D G Y
Sbjct: 25 SEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYC 84
Query: 179 LASNEHGTARQRVS 192
A N +GTA + +
Sbjct: 85 QAQNGYGTAMRSEA 98
>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 39.2 bits (90), Expect = 4e-05
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQ--- 160
PR ++ E + + V G P P + + N + + Y + G+
Sbjct: 6 PRVVSLEE----PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 61
Query: 161 ATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
L NK + G Y +A N GTA Q ++
Sbjct: 62 GCLLFNKPTHYNNGNYTLIAKNPLGTANQTIN 93
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 38.4 bits (88), Expect = 5e-05
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 118 KNENSSLFWFVYGYPKPKVSFYF-NDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMY 176
+ + L V G +P + + + + Y ++ L + + D G Y
Sbjct: 10 QGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 69
Query: 177 EALASNEHGTARQR 190
+ T +
Sbjct: 70 WCQVEDGGETEISQ 83
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules
[TaxId: 9606]}
Length = 91
Score = 37.9 bits (87), Expect = 9e-05
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 2/88 (2%)
Query: 105 RFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLF 164
R L + + E++ G P P V++ +++ R+ + T+
Sbjct: 1 RILTKPRS-MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEI 59
Query: 165 INKMLDRDVGMYEALASNEHGTARQRVS 192
+ D G Y + N G +
Sbjct: 60 SSVQAS-DEGNYSVVVENSEGKQEAEFT 86
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 37.3 bits (85), Expect = 2e-04
Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNG------QATLFINKMLDRDVGMYEALASNE 183
G P + +++ + ++ + +++ + L + + D G Y A N
Sbjct: 29 GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNG 88
Query: 184 HGTAR 188
+GT
Sbjct: 89 YGTPM 93
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 37.4 bits (85), Expect = 2e-04
Identities = 12/84 (14%), Positives = 22/84 (26%), Gaps = 1/84 (1%)
Query: 109 QEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKM 168
+ G K + L E GR T++ + +
Sbjct: 43 WQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDR-SIFTVEGA 101
Query: 169 LDRDVGMYEALASNEHGTARQRVS 192
D G+Y N G + ++
Sbjct: 102 EKEDEGVYTVTVKNPVGEDQVNLT 125
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 36.0 bits (82), Expect = 4e-04
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATL 163
P +L+ DT+ I + G P+P V + + + + + L
Sbjct: 2 PDWLDVITDTEADI-GSDLRWSCVASGKPRPAVRWLRDGQPLA-----SQNRIEVSGGEL 55
Query: 164 FINKMLDRDVGMYEALASNEHGTARQRVS 192
+K++ D GMY+ +A N+HGT
Sbjct: 56 RFSKLVLEDSGMYQCVAENKHGTVYASAE 84
>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 89
Score = 35.7 bits (81), Expect = 4e-04
Identities = 11/90 (12%), Positives = 21/90 (23%), Gaps = 7/90 (7%)
Query: 104 PRFLNQEHDTQYGIKNENSSL-FWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
+E +Q + + P + + S +
Sbjct: 2 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP------SRAMDFNGI 55
Query: 163 LFINKMLDRDVGMYEALASNEHGTARQRVS 192
L I + D G Y SN + +
Sbjct: 56 LTIRNVQPSDAGTYVCTGSNMFAMDQGTAT 85
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 35.8 bits (81), Expect = 5e-04
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 119 NENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSY-------TRNGQATLFINKMLDR 171
NE+ L G+ P+V + F Y+S + + + + +
Sbjct: 16 NESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRK 75
Query: 172 DVGMYEALASNEHGTARQRVS 192
D G Y + S E G VS
Sbjct: 76 DNGEYTCMVSEEGGQNYGEVS 96
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 35.4 bits (80), Expect = 7e-04
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
+ P +Q + +N + L + G + + + + + ++ R +
Sbjct: 1 KYPVLKDQPAE-VLFRENNPTVLECIIEGNDQGVK-YSWKKDGKSYNWQEHNAALRKDEG 58
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRV 191
+L + D G Y+ A G A RV
Sbjct: 59 SLVFLRPQASDEGHYQCFAETPAGVASSRV 88
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 34.4 bits (78), Expect = 0.002
Identities = 9/68 (13%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 125 FWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEH 184
F+ PK+ +Y + + + + + + L + + ++ G Y AS +
Sbjct: 26 FFKNENNELPKLQWYKDCKPLLLDNIH----FSGVKDRLIVMNVAEKHRGNYTCHASYTY 81
Query: 185 GTARQRVS 192
+ ++
Sbjct: 82 LGKQYPIT 89
>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27
[TaxId: 9606]}
Length = 89
Score = 34.0 bits (77), Expect = 0.002
Identities = 7/62 (11%), Positives = 15/62 (24%), Gaps = 1/62 (1%)
Query: 130 GYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQ 189
P + + + + L ++ G A+N A
Sbjct: 26 SEPDVHGQWKLKGQPLTASPDC-EIIEDGKKHILILHNCQLGMTGEVSFQAANAKSAANL 84
Query: 190 RV 191
+V
Sbjct: 85 KV 86
>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 34.4 bits (77), Expect = 0.002
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 12/101 (11%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRY-----------D 152
P ++ ++T L V G + +N +I+
Sbjct: 2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61
Query: 153 SSYTRNGQATLFINKMLDRDVG-MYEALASNEHGTARQRVS 192
+ L I+++ R + A N HG +
Sbjct: 62 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQ 102
>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 34.3 bits (77), Expect = 0.003
Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 8/98 (8%)
Query: 102 QAPRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYF------NDELIEMGGRYDSSY 155
P + TQ+ + E + F+ P P + S
Sbjct: 5 NGPPII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST 63
Query: 156 TRNGQATLFINK-MLDRDVGMYEALASNEHGTARQRVS 192
+TL I+ + +Y A N G+ + +
Sbjct: 64 EEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIR 101
>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 32.6 bits (73), Expect = 0.006
Identities = 13/65 (20%), Positives = 22/65 (33%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
++ K KV+ N E + Y +L I + D YE + N T
Sbjct: 27 LWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTM 86
Query: 188 RQRVS 192
+ +
Sbjct: 87 KFFLY 91
>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3,
second domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 31.9 bits (71), Expect = 0.012
Identities = 13/87 (14%), Positives = 18/87 (20%), Gaps = 10/87 (11%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATL 163
P F + D V + ++ I S G
Sbjct: 2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGV--- 58
Query: 164 FINKMLDRDVGMYEALASNEHGTARQR 190
M+ A N G A R
Sbjct: 59 -------TQSTMFSCEAHNLKGLASSR 78
>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor
receptor TrkA, different domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 92
Score = 31.6 bits (70), Expect = 0.017
Identities = 10/91 (10%), Positives = 18/91 (19%), Gaps = 7/91 (7%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGY--PKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
P Q + + + + + + S
Sbjct: 3 PTLKVQVPNASV---DVGDDVLLRCQVEGRGLEQAGWILTELEQSA--TVMKSGGLPSLG 57
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRVS 192
N D + A N+ G A V
Sbjct: 58 LTLANVTSDLNRKNVTCWAENDVGRAEVSVQ 88
>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 31.3 bits (69), Expect = 0.027
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 7/82 (8%)
Query: 118 KNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYD-------SSYTRNGQATLFINKMLD 170
+N L G+ P+V + F+ Y+ + +
Sbjct: 18 ENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR 77
Query: 171 RDVGMYEALASNEHGTARQRVS 192
D G Y + S E G + V
Sbjct: 78 EDTGTYTCMVSEEGGNSYGEVK 99
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 30.3 bits (67), Expect = 0.038
Identities = 7/65 (10%), Positives = 12/65 (18%), Gaps = 2/65 (3%)
Query: 128 VYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTA 187
V P + + + + N I + D G Y
Sbjct: 25 VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ--IRGIKKTDEGTYRCEGRILARGE 82
Query: 188 RQRVS 192
Sbjct: 83 INFKD 87
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 93
Score = 30.3 bits (67), Expect = 0.041
Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 2/90 (2%)
Query: 103 APRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQAT 162
P+ L +L G P P ++ D + + +
Sbjct: 2 KPKILTASRK-IKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT-S 59
Query: 163 LFINKMLDRDVGMYEALASNEHGTARQRVS 192
+F D G Y+ NE G
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAIFE 89
>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 29.6 bits (65), Expect = 0.079
Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 104 PRFLNQEHDTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEM-------GGRYDSSYT 156
PR + ++ + E + L P ++ E R+ S +
Sbjct: 3 PRVKAVKSS-EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61
Query: 157 RNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+ N ++ D G Y ++ G+ + ++
Sbjct: 62 QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIIT 97
>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C,
different domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 28.1 bits (61), Expect = 0.40
Identities = 5/38 (13%), Positives = 9/38 (23%)
Query: 155 YTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRVS 192
++ L I G Y S + +
Sbjct: 66 ASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFN 103
>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 27.7 bits (60), Expect = 0.49
Identities = 8/76 (10%), Positives = 17/76 (22%), Gaps = 8/76 (10%)
Query: 125 FWFVYGYPKPKVSFYFNDELIEMGGRYD--------SSYTRNGQATLFINKMLDRDVGMY 176
KP + ++ + ++R + I K D G Y
Sbjct: 24 VKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNY 83
Query: 177 EALASNEHGTARQRVS 192
+ +
Sbjct: 84 RCEVTYKDKFDSCSFD 99
>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1,
ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 26.9 bits (58), Expect = 0.60
Identities = 11/91 (12%), Positives = 23/91 (25%), Gaps = 15/91 (16%)
Query: 103 APRFLNQEH-DTQYGIKNENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQA 161
PR ++ +N + +G P P++ +
Sbjct: 2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP-------------- 47
Query: 162 TLFINKMLDRDVGMYEALASNEHGTARQRVS 192
+ G Y A + G + V+
Sbjct: 48 IGESVTVTRDLEGTYLCRARSTQGEVTREVT 78
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 98
Score = 27.0 bits (59), Expect = 0.67
Identities = 8/67 (11%), Positives = 17/67 (25%), Gaps = 3/67 (4%)
Query: 120 ENSSLFWFVYGYPKPKVSFYFNDELIEMGGRYDSSYTRNGQATLFINKMLDRDVGMYEAL 179
+ + V+ + ++ L I + D G Y
Sbjct: 22 MTDDIDEVRWERGSTLVAEFKRKMKPF---LKSGAFEILANGDLKIKNLTRDDSGTYNVT 78
Query: 180 ASNEHGT 186
+ +GT
Sbjct: 79 VYSTNGT 85
>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car),
domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 26.9 bits (58), Expect = 0.94
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 151 YDSSYTRNGQATLFINKMLDRDVGMYEALASNEHGTARQRV 191
+ S+ ++G A++ + + D+G Y+ G A +++
Sbjct: 78 FTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKI 118
>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 25.6 bits (55), Expect = 2.5
Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 126 WFVYGYPKPKVSFYFNDELIE-MGGRYDSSYTRN-GQATLFINKMLDRDVGMYEALASNE 183
++ Y E + + +Y + + TL ++ + +D G+Y+ + ++
Sbjct: 32 FWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHK 91
Query: 184 HGTARQRV 191
T R+
Sbjct: 92 KPTGMIRI 99
>g1mhm.1 d.156.1.1 (B:,A:) S-adenosylmethionine decarboxylase
{Potato (Solanum tuberosum) [TaxId: 4113]}
Length = 323
Score = 26.0 bits (57), Expect = 3.6
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 9/72 (12%)
Query: 82 KSFYFPRDFDLERPPREGYAQAPRFLNQ--EHDTQYG----IKNENSSLFWFVYGYPKPK 135
SF FP + P +++ L+ + + + + W VY
Sbjct: 104 GSFIFP---GAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPDKTQKWHVYSASAGS 160
Query: 136 VSFYFNDELIEM 147
V +EM
Sbjct: 161 VQSNDPVYTLEM 172
>d1myta_ a.1.1.2 (A:) Myoglobin {Yellowfin tuna (Thunnus albacares)
[TaxId: 8236]}
Length = 146
Score = 24.7 bits (53), Expect = 7.2
Identities = 12/69 (17%), Positives = 19/69 (27%)
Query: 23 HPDKSFYFPRDFDLERPPREGYAQAPRFLNQEHDTQEKLNPERPKFEPYLPPGVPFHPDK 82
HP+ FP+ + + G A +L + L P H K
Sbjct: 32 HPETQKLFPKFAGIAQADIAGNAAISAHGATVLKKLGELLKAKGSHAAILKPLANSHATK 91
Query: 83 SFYFPRDFD 91
+F
Sbjct: 92 HKIPINNFK 100
>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase
{Ralstonia metallidurans [TaxId: 119219]}
Length = 174
Score = 24.3 bits (53), Expect = 9.0
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 50 FLNQEHDTQEKLNPERPKFEPYLPPGVPFHPDKSFYFPRDFDLERPPREG 99
+LN D + + + LPP V P + +ER G
Sbjct: 67 YLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRPEAGSACLVIERQRPAG 116
>d1srqa_ e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Rap1GAP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 24.5 bits (53), Expect = 10.0
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 7 PERPKFEPYLPPGVPFHPDKSFYFPRDF 34
+ P F P LP F F ++F
Sbjct: 263 DDVPFFGPPLPDPAVFRKGPEF---QEF 287
Score = 24.5 bits (53), Expect = 10.0
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 63 PERPKFEPYLPPGVPFHPDKSFYFPRDF 90
+ P F P LP F F ++F
Sbjct: 263 DDVPFFGPPLPDPAVFRKGPEF---QEF 287
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.140 0.440
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 832,442
Number of extensions: 40102
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 55
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)