BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5284
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D8R|A Chain A, Solution Structure Of The Thap Domain Of The Human Thap
Domain-Containing Protein 2
Length = 99
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 1 MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSK 60
MP +C C N +S+H P R W++ L K + P + +CSK
Sbjct: 8 MPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWVR----LVRRKNFVP-GKHTFLCSK 62
Query: 61 HFIEPDFVETPLRRRLKPTSVPSVF 85
HF F T RRLK +VP++F
Sbjct: 63 HFEASCFDLTGQTRRLKMDAVPTIF 87
>pdb|2LAU|A Chain A, Solution Structure Of The Thap-Zinc Finger Domain 1-81
From The Cell Growth Suppressor Human Thap11 Protein
Length = 81
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 4 SCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQI---GILTGNKFWQPTSESAVVCSK 60
+CCVP C + + L ++ P LR W+K + G+ +QPT+ +CS
Sbjct: 6 TCCVPGCYNNSHRDKALHFYTFPKDAELRRLWLKNVSRAGVSGCFSTFQPTTGHR-LCSV 64
Query: 61 HFIEPDFVETPLRRRLKPTSVPSVF 85
HF R+ VP++F
Sbjct: 65 HFQGG--------RKTYTVRVPTIF 81
>pdb|2KO0|A Chain A, Solution Structure Of The Thap Zinc Finger Of Thap1 In
Complex With Its Dna Target
pdb|2L1G|A Chain A, Rdc Refined Solution Structure Of The Thap Zinc Finger
Of Thap1 In Complex With Its 16bp Rrm1 Dna Target
Length = 87
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 1 MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSK 60
M SC CK + + +S+H+ P P + K+ K ++PT S++ CS+
Sbjct: 1 MVQSCSAYGCKNRYDKDKPVSFHKFPLTRP---SLCKEWEAAVRRKNFKPTKYSSI-CSE 56
Query: 61 HFIEPDFVETPLRRRLKPTSVPSVFYMM 88
HF F + LK +VP++F +
Sbjct: 57 HFTPDSFKRESNNKLLKENAVPTIFLEL 84
>pdb|2JTG|A Chain A, Solution Structure Of The Thap-Zinc Finger Of Thap1
Length = 87
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 1 MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSK 60
M SC CK + + +S+H+ P P + K+ K ++PT S++ CS+
Sbjct: 1 MVQSCSAYGCKNRYDKDKPVSFHKFPLTRP---SLCKEWEAAVRRKNFKPTKYSSI-CSE 56
Query: 61 HFIEPDFVETPLRRRLKPTSVPSVF 85
HF F + LK +VP++F
Sbjct: 57 HFTPDCFKRECNNKLLKENAVPTIF 81
>pdb|1LFG|A Chain A, Structure Of Diferric Human Lactoferrin
Length = 691
Score = 26.9 bits (58), Expect = 5.7, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 25/66 (37%)
Query: 48 WQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYESPTT 107
W SE +V CS D + L+ S+ + GK VP Y+S +
Sbjct: 361 WSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENYKSAQS 420
Query: 108 PNLFPN 113
+ PN
Sbjct: 421 SDPDPN 426
>pdb|2BJJ|X Chain X, Structure Of Recombinant Human Lactoferrin Produced In The
Milk Of Transgenic Cows
Length = 692
Score = 26.9 bits (58), Expect = 6.4, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 25/66 (37%)
Query: 48 WQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYESPTT 107
W SE +V CS D + L+ S+ + GK VP Y+S +
Sbjct: 362 WSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENYKSQQS 421
Query: 108 PNLFPN 113
+ PN
Sbjct: 422 SDPDPN 427
>pdb|1CB6|A Chain A, Structure Of Human Apolactoferrin At 2.0 A Resolution.
pdb|1BKA|A Chain A, Oxalate-Substituted Diferric Lactoferrin
Length = 691
Score = 26.9 bits (58), Expect = 6.4, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 25/66 (37%)
Query: 48 WQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYESPTT 107
W SE +V CS D + L+ S+ + GK VP Y+S +
Sbjct: 361 WSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENYKSQQS 420
Query: 108 PNLFPN 113
+ PN
Sbjct: 421 SDPDPN 426
>pdb|1LCF|A Chain A, Crystal Structure Of Copper-And Oxalate-Substituted Human
Lactoferrin At 2.0 Angstroms Resolution
Length = 691
Score = 26.9 bits (58), Expect = 6.5, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 25/66 (37%)
Query: 48 WQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYESPTT 107
W SE +V CS D + L+ S+ + GK VP Y+S +
Sbjct: 361 WSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENYKSQQS 420
Query: 108 PNLFPN 113
+ PN
Sbjct: 421 SDPDPN 426
>pdb|1SQY|A Chain A, Structure Of Human Diferric Lactoferrin At 2.5a Resolution
Using Crystals Grown At Ph 6.5
Length = 691
Score = 26.9 bits (58), Expect = 6.5, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 25/66 (37%)
Query: 48 WQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYESPTT 107
W SE +V CS D + L+ S+ + GK VP Y+S +
Sbjct: 361 WSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENYKSQQS 420
Query: 108 PNLFPN 113
+ PN
Sbjct: 421 SDPDPN 426
>pdb|1B0L|A Chain A, Recombinant Human Diferric Lactoferrin
Length = 691
Score = 26.9 bits (58), Expect = 6.5, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 25/66 (37%)
Query: 48 WQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYESPTT 107
W SE +V CS D + L+ S+ + GK VP Y+S +
Sbjct: 361 WSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENYKSQQS 420
Query: 108 PNLFPN 113
+ PN
Sbjct: 421 SDPDPN 426
>pdb|1LFI|A Chain A, Metal Substitution In Transferrins: The Crystal Structure
Of Human Copper-lactoferrin At 2.1 Angstroms Resolution
Length = 691
Score = 26.9 bits (58), Expect = 6.5, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 25/66 (37%)
Query: 48 WQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYESPTT 107
W SE +V CS D + L+ S+ + GK VP Y+S +
Sbjct: 361 WSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENYKSQQS 420
Query: 108 PNLFPN 113
+ PN
Sbjct: 421 SDPDPN 426
>pdb|1FCK|A Chain A, Structure Of Diceric Human Lactoferrin
Length = 692
Score = 26.9 bits (58), Expect = 6.5, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 25/66 (37%)
Query: 48 WQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYESPTT 107
W SE +V CS D + L+ S+ + GK VP Y+S +
Sbjct: 362 WSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENYKSQQS 421
Query: 108 PNLFPN 113
+ PN
Sbjct: 422 SDPDPN 427
>pdb|1LFH|A Chain A, Molecular Replacement Solution Of The Structure Of
Apolactoferrin, A Protein Displaying Large-Scale
Conformational Change
Length = 691
Score = 26.9 bits (58), Expect = 6.6, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 25/66 (37%)
Query: 48 WQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYESPTT 107
W SE +V CS D + L+ S+ + GK VP Y+S +
Sbjct: 361 WSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENYKSQQS 420
Query: 108 PNLFPN 113
+ PN
Sbjct: 421 SDPDPN 426
>pdb|1N76|A Chain A, Crystal Structure Of Human Seminal Lactoferrin At 3.4 A
Resolution
Length = 690
Score = 26.9 bits (58), Expect = 6.6, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 25/66 (37%)
Query: 48 WQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYESPTT 107
W SE +V CS D + L+ S+ + GK VP Y+S +
Sbjct: 360 WSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENYKSQQS 419
Query: 108 PNLFPN 113
+ PN
Sbjct: 420 SDPDPN 425
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,519,025
Number of Sequences: 62578
Number of extensions: 225116
Number of successful extensions: 404
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 20
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)