Query psy5284
Match_columns 180
No_of_seqs 162 out of 895
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 22:39:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jtg_A THAP domain-containing 99.9 2.4E-28 8.1E-33 174.1 6.3 83 1-88 1-84 (87)
2 2d8r_A THAP domain-containing 99.9 1.6E-27 5.5E-32 174.0 7.9 84 1-89 8-91 (99)
3 2lau_A THAP domain-containing 99.9 8.3E-25 2.8E-29 153.8 6.0 76 1-85 3-81 (81)
4 2jm3_A Hypothetical protein; z 99.8 1.4E-21 4.7E-26 140.9 4.7 72 1-86 3-78 (91)
5 3kde_C Transposable element P 99.6 4.6E-16 1.6E-20 108.0 4.4 58 18-83 12-75 (77)
6 2h8b_A Insulin-like 3; insulin 14.9 17 0.00059 19.4 -1.2 10 3-12 8-17 (26)
7 2js7_A Myeloid differentiation 13.0 1.1E+02 0.0039 22.5 2.5 28 138-165 13-40 (160)
8 2x5h_A ORF 131; viral protein; 10.4 1.2E+02 0.0041 20.8 1.6 16 162-177 70-85 (97)
9 6rlx_A Relaxin, A-chain; hormo 8.0 15 0.00053 19.4 -2.9 11 3-13 8-18 (24)
10 3ub2_A TOLL/interleukin-1 rece 7.3 2E+02 0.007 20.7 2.0 27 139-165 8-34 (146)
No 1
>2jtg_A THAP domain-containing protein 1; zinc finger, CCCH, DNA-binding, metal-binding, zinc- finger, metal binding protein; NMR {Homo sapiens} PDB: 2ko0_A 2l1g_A*
Probab=99.95 E-value=2.4e-28 Score=174.08 Aligned_cols=83 Identities=28% Similarity=0.553 Sum_probs=75.5
Q ss_pred CCcceeeccCCCCccCCCCeEEEecC-CChhHHHHHHHHhccccCCcccCCCCCceeeccCCccCCCcccCCCCcccCCC
Q psy5284 1 MPPSCCVPTCKLMRNNSEKLSYHEIP-SKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRLKPT 79 (180)
Q Consensus 1 M~~~C~V~gC~n~~~k~~~isff~FP-kd~~~r~~Wi~~~~~~~~~~~~~p~~~~~~VCs~HF~~~~f~~~~~~~~Lk~~ 79 (180)
||+.|+|+||.|++.++.+++||+|| +|++++++|+++|++ +.|.|.+. ++|||+||+++||.....+++|+++
T Consensus 1 M~~~C~v~~C~n~~~~~~~~~f~~FP~kd~~~~~~W~~~~~~----~~~~~~~~-~~iCs~HF~~~~f~~~~~~~~Lk~~ 75 (87)
T 2jtg_A 1 MVQSCSAYGCKNRYDKDKPVSFHKFPLTRPSLCKEWEAAVRR----KNFKPTKY-SSICSEHFTPDCFKRECNNKLLKEN 75 (87)
T ss_dssp CCCCCSSTTCCCCCCSSSCCCEEECCSSCCTTHHHHHHHHCS----SCCCTTTT-SEEEGGGSCGGGGCCCCSSCCCCTT
T ss_pred CCCccEeCCCCCCCcCCCCeEEEECCCCChHHHHHHHHHhCc----ccCccCCC-CEEccccCcHhHhhccCCcCeeCCC
Confidence 99999999999988767789999999 899999999999998 36777764 8999999999999987778999999
Q ss_pred ceeecccCC
Q psy5284 80 SVPSVFYMM 88 (180)
Q Consensus 80 AVPtlf~~~ 88 (180)
||||||...
T Consensus 76 AVPtif~~~ 84 (87)
T 2jtg_A 76 AVPTIFLEL 84 (87)
T ss_dssp CCCGGGCCC
T ss_pred CCCcCcCCC
Confidence 999999864
No 2
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=99.94 E-value=1.6e-27 Score=174.04 Aligned_cols=84 Identities=31% Similarity=0.597 Sum_probs=75.9
Q ss_pred CCcceeeccCCCCccCCCCeEEEecCCChhHHHHHHHHhccccCCcccCCCCCceeeccCCccCCCcccCCCCcccCCCc
Q psy5284 1 MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRLKPTS 80 (180)
Q Consensus 1 M~~~C~V~gC~n~~~k~~~isff~FPkd~~~r~~Wi~~~~~~~~~~~~~p~~~~~~VCs~HF~~~~f~~~~~~~~Lk~~A 80 (180)
|++.|+|+||.|++.+..+++||+||+|++++++|+++|++ +.|.|.+. ++|||+||+++||.....+++|+++|
T Consensus 8 M~~~C~v~gC~n~~~~~~~~~ff~FPkd~~~~~~W~~~~~r----~~~~~~~~-~~ICs~HF~~~~f~~~~~~~~Lk~~A 82 (99)
T 2d8r_A 8 MPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWVRLVRR----KNFVPGKH-TFLCSKHFEASCFDLTGQTRRLKMDA 82 (99)
T ss_dssp CCCCCCSSSCCCSCCSSCCCCCEECCSSHHHHHHHHHHTTC----TTCCCSSS-CEECTTSSCSTTBSCTTSSCCBCTTC
T ss_pred CCCeeEeCCCCCCCcCCCCeEEEECCCCHHHHHHHHHHhCc----cccCCCCc-ceeeeeecchhhhhhccCccccCCCc
Confidence 99999999999988767789999999999999999999999 36777764 89999999999998777889999999
Q ss_pred eeecccCCC
Q psy5284 81 VPSVFYMMQ 89 (180)
Q Consensus 81 VPtlf~~~~ 89 (180)
|||||...+
T Consensus 83 VPtlf~~~~ 91 (99)
T 2d8r_A 83 VPTIFDFCT 91 (99)
T ss_dssp CCSCCCCCC
T ss_pred CccCcCCcC
Confidence 999997653
No 3
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=99.91 E-value=8.3e-25 Score=153.76 Aligned_cols=76 Identities=29% Similarity=0.565 Sum_probs=65.3
Q ss_pred CCcceeeccCCCCccCCCCeEEEecCCChhHHHHHHHHhccccC---CcccCCCCCceeeccCCccCCCcccCCCCcccC
Q psy5284 1 MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTG---NKFWQPTSESAVVCSKHFIEPDFVETPLRRRLK 77 (180)
Q Consensus 1 M~~~C~V~gC~n~~~k~~~isff~FPkd~~~r~~Wi~~~~~~~~---~~~~~p~~~~~~VCs~HF~~~~f~~~~~~~~Lk 77 (180)
.|.+|+|+||.|++.++.+++||+||+|++++++|+++|++... ...|.|++. ++|||+||+.. ++|+
T Consensus 3 pG~~C~v~gC~n~~~~~~~v~fh~FPkd~~~~~~Wl~~~~r~~~~~~~~~~~~~~~-~rvCS~HF~~~--------~~L~ 73 (81)
T 2lau_A 3 PGFTCCVPGCYNNSHRDKALHFYTFPKDAELRRLWLKNVSRAGVSGCFSTFQPTTG-HRLCSVHFQGG--------RKTY 73 (81)
T ss_dssp SCCSCCCSSSSSCTTSCCCSCEECCCSSHHHHHHHHHHHCCSTTSSCCCTTCTTSC-CCEEGGGSSSS--------SSBT
T ss_pred CCCEEEeCCCcCCCCCCCCeEEEECCCCHHHHHHHHHHhCcccccccccccccCCC-CEehhhhCCCC--------CccC
Confidence 36799999999988777899999999999999999999998543 245778764 89999999743 4799
Q ss_pred CCceeecc
Q psy5284 78 PTSVPSVF 85 (180)
Q Consensus 78 ~~AVPtlf 85 (180)
++||||||
T Consensus 74 ~~aVPTiF 81 (81)
T 2lau_A 74 TVRVPTIF 81 (81)
T ss_dssp TBCSCCCC
T ss_pred CCCCCCcC
Confidence 99999998
No 4
>2jm3_A Hypothetical protein; zinc finger, domain, metal binding protein; NMR {Caenorhabditis elegans}
Probab=99.84 E-value=1.4e-21 Score=140.92 Aligned_cols=72 Identities=28% Similarity=0.508 Sum_probs=60.6
Q ss_pred CCcceeeccCCCCccC---CCCeEEEecCCCh-hHHHHHHHHhccccCCcccCCCCCceeeccCCccCCCcccCCCCccc
Q psy5284 1 MPPSCCVPTCKLMRNN---SEKLSYHEIPSKE-PLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRL 76 (180)
Q Consensus 1 M~~~C~V~gC~n~~~k---~~~isff~FPkd~-~~r~~Wi~~~~~~~~~~~~~p~~~~~~VCs~HF~~~~f~~~~~~~~L 76 (180)
||..|+|+||.|++.. ..+++||+||+++ +++++|+++|++. .|.+... ++|||.||++++|..
T Consensus 3 Mp~~C~V~gC~n~s~~~~~~~~~sFfrFPk~~~~~rk~Wl~ai~r~----~~~~~~~-~rICS~HF~~~~~~~------- 70 (91)
T 2jm3_A 3 MPTTCGFPNCKFRSRYRGLEDNRHFYRIPKRPLILRQRWLTAIGRT----EETVVSQ-LRICSAHFEGGEKKE------- 70 (91)
T ss_dssp SCCCCCCTTCCSTTTSSSCCTTCCCBCCCCSSHHHHHHHHHHHTCC----GGGSSSS-CCBCGGGSTTSCCSS-------
T ss_pred CCCeEEeCCCcCCcccccCCCCceEEeCCCCCHHHHHHHHHHhCCC----CCCCCCC-cEEechhcCCCCccc-------
Confidence 9999999999987643 5789999999987 9999999999993 5666664 899999999998754
Q ss_pred CCCceeeccc
Q psy5284 77 KPTSVPSVFY 86 (180)
Q Consensus 77 k~~AVPtlf~ 86 (180)
++||+-.+
T Consensus 71 --~~ip~~~p 78 (91)
T 2jm3_A 71 --GDIPVPDP 78 (91)
T ss_dssp --SBCCCSCT
T ss_pred --CcCCCCCc
Confidence 78877554
No 5
>3kde_C Transposable element P transposase; THAP domain, DNA-binding domain, zinc-finger, beta-alpha-BET element transposase, DNA integration; HET: BRU; 1.74A {Drosophila melanogaster}
Probab=99.60 E-value=4.6e-16 Score=107.99 Aligned_cols=58 Identities=24% Similarity=0.462 Sum_probs=51.1
Q ss_pred CCeEEEecCCChhHHHHHHHHhccccCCcccCCCCCceeeccCCccCCCcccC------CCCcccCCCceee
Q psy5284 18 EKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVET------PLRRRLKPTSVPS 83 (180)
Q Consensus 18 ~~isff~FPkd~~~r~~Wi~~~~~~~~~~~~~p~~~~~~VCs~HF~~~~f~~~------~~~~~Lk~~AVPt 83 (180)
.|++||+||+|..+|++|.+.++.. ++. +++||+.||++++|... .++++|++|||||
T Consensus 12 ~gvslfr~PK~~~~Rk~W~~~l~c~-------lt~-nSrIC~~HF~~Sd~~~~~~~~~~~krRrL~~~AiPt 75 (77)
T 3kde_C 12 TGVKLIHVPKCAIKRKLWEQSLGCS-------LGE-NSQICDTHFNDSQWKAAPAKGQTFKRRRLNADAVPS 75 (77)
T ss_dssp CSSCEEECCSSHHHHHHHHHHHTSC-------CCT-TCEEEGGGSCGGGBCCC--CCCCCSSCCBCTTCCCC
T ss_pred CCceEEECCCCHHHHHHHHHHcCCC-------CCC-cccHHHHhCCHHHheecccccccccceecCCCCCCC
Confidence 5799999999999999999999883 233 58999999999999865 3699999999998
No 6
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=14.94 E-value=17 Score=19.38 Aligned_cols=10 Identities=30% Similarity=1.042 Sum_probs=7.8
Q ss_pred cceeeccCCC
Q psy5284 3 PSCCVPTCKL 12 (180)
Q Consensus 3 ~~C~V~gC~n 12 (180)
+.||..||..
T Consensus 8 ~~CClsGCt~ 17 (26)
T 2h8b_A 8 RYCCLSGCTQ 17 (26)
T ss_dssp HHHHHTCBCH
T ss_pred HHHHhcCCcH
Confidence 4789999974
No 7
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=13.05 E-value=1.1e+02 Score=22.48 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=23.3
Q ss_pred ecccccceeEEEecchhHHHHHhhhhhH
Q psy5284 138 ENSKYDAFLQASFADKKFLEMLQLNLEM 165 (180)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (180)
+...||+|+..+=.|.+|++.|...|+.
T Consensus 13 ~~~~yDvFISys~~D~~fv~~L~~~Le~ 40 (160)
T 2js7_A 13 MPERFDAFICYCPSDIQFVQEMIRQLEQ 40 (160)
T ss_dssp CTTCEEEEEECCGGGHHHHHHHHHHHHT
T ss_pred CCcceEEEEEcccccHHHHHHHHHHHhc
Confidence 5678999999999999999887766654
No 8
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1} PDB: 2x5g_A* 2x5t_A
Probab=10.37 E-value=1.2e+02 Score=20.85 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHhhccc
Q psy5284 162 NLEMLEVANHFLADYS 177 (180)
Q Consensus 162 ~~~~~~~~~~~~~~~~ 177 (180)
|.|+|+..-.||..||
T Consensus 70 DA~dL~lIa~FLeKYS 85 (97)
T 2x5h_A 70 DAEDLKLIAEFLEKYS 85 (97)
T ss_dssp GHHHHHHHHHHHHHTH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4688888888888886
No 9
>6rlx_A Relaxin, A-chain; hormone(muscle relaxant); 1.50A {Homo sapiens} SCOP: g.1.1.1
Probab=8.01 E-value=15 Score=19.37 Aligned_cols=11 Identities=27% Similarity=0.760 Sum_probs=8.1
Q ss_pred cceeeccCCCC
Q psy5284 3 PSCCVPTCKLM 13 (180)
Q Consensus 3 ~~C~V~gC~n~ 13 (180)
.+||..||..+
T Consensus 8 ~kCC~~GCTk~ 18 (24)
T 6rlx_A 8 NKCCHVGCTKR 18 (26)
T ss_dssp HHHHHTCEEHH
T ss_pred HHHhccCCCHH
Confidence 47888888753
No 10
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=7.34 E-value=2e+02 Score=20.72 Aligned_cols=27 Identities=26% Similarity=0.118 Sum_probs=22.5
Q ss_pred cccccceeEEEecchhHHHHHhhhhhH
Q psy5284 139 NSKYDAFLQASFADKKFLEMLQLNLEM 165 (180)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (180)
..+||+|+..+=.|.+|.+.|-..||.
T Consensus 8 ~k~YDvFISy~~~D~~~v~~L~~~Le~ 34 (146)
T 3ub2_A 8 SKDYDVCVCHSEEDLVAAQDLVSYLEG 34 (146)
T ss_dssp SSSEEEEEECCGGGHHHHHHHHHHHHC
T ss_pred CCcceEEEeCChhhHHHHHHHHHHHhC
Confidence 357899999999999998888777765
Done!