RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5284
(180 letters)
>gnl|CDD|218604 pfam05485, THAP, THAP domain. The THAP domain is a putative
DNA-binding domain (DBD) and probably also binds a zinc
ion. It features the conserved C2CH architecture
(consensus sequence: Cys - 2-4 residues - Cys - 35-50
residues - Cys - 2 residues - His). Other universal
features include the location of the domain at the
N-termini of proteins, its size of about 90 residues, a
C-terminal AVPTIF box and several other conserved
residues. Orthologues of the human THAP domain have
been identified in other vertebrates and probably worms
and flies, but not in other eukaryotes or any
prokaryotes.
Length = 84
Score = 71.3 bits (175), Expect = 6e-17
Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 4 SCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFI 63
CCVP C +S+H P L W+K +G W+PT S +CSKHF
Sbjct: 2 KCCVPGCN-RSKRGPGVSFHRFPKDPELLRKWLKNLGR---EDDWKPTKNS-RICSKHFE 56
Query: 64 EPDFVETPLRRRLKPTSVPSVF 85
F RRRLKP +VP++F
Sbjct: 57 PDCFDNRGGRRRLKPGAVPTLF 78
>gnl|CDD|214951 smart00980, THAP, The THAP domain is a putative DNA-binding
domain (DBD) and probably also binds a zinc ion. It
features the conserved C2CH architecture (consensus
sequence: Cys - 2-4 residues - Cys - 35-50 residues -
Cys - 2 residues - His). Other universal features
include the location of the domain at the N-termini of
proteins, its size of about 90 residues, a C-terminal
AVPTIF box and several other conserved residues.
Orthologues of the human THAP domain have been
identified in other vertebrates and probably worms and
flies, but not in other eukaryotes or any prokaryotes.
Length = 80
Score = 67.1 bits (164), Expect = 2e-15
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 4 SCCVPTCKLMRNNSEKLSYHEIPSKEP-LRTNWIKQIGILTGNKFWQPTSESAVVCSKHF 62
CCVP C + LS+ P ++P LR W++ +G L + +P S +CS+HF
Sbjct: 1 KCCVPGCGNRSKKNPGLSFFRFPKEDPELRKKWLENLG-LPDDPNRKPKKRS-RICSRHF 58
Query: 63 IEPDFVETPLRRRLKPTSVPSVF 85
DF + RRLKP +VP++F
Sbjct: 59 EPDDFDNS--GRRLKPGAVPTLF 79
>gnl|CDD|128933 smart00692, DM3, Zinc finger domain in CG10631, C. elegans
LIN-15B and human P52rIPK.
Length = 59
Score = 33.4 bits (77), Expect = 0.006
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 22 YHEIPSKEPLRTNWIKQIGI-LTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRLKPTS 80
P L W + + K +CS+HF EP+ RRRLKP +
Sbjct: 1 LFRFPKDPELLKKWEHNLRLSPDEKKLKNS-----RICSRHF-EPECFGK--RRRLKPGA 52
Query: 81 VPSVF 85
VP++
Sbjct: 53 VPTLE 57
>gnl|CDD|215350 PLN02648, PLN02648, allene oxide synthase.
Length = 480
Score = 29.1 bits (66), Expect = 1.5
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 14/52 (26%)
Query: 71 PLRRRLKPTSVPSVFYMMQGKPYFVPSRRRKYES-------PTTPNLFPNSQ 115
++ RL ++ QG+ F SR KY+S P P + P+ +
Sbjct: 30 AIKDRLD-------YFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPR 74
>gnl|CDD|226574 COG4089, COG4089, Predicted membrane protein [Function unknown].
Length = 235
Score = 27.8 bits (62), Expect = 2.6
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 67 FVETPLRRRLKPTSVPSV-FYMMQGKPYFVPSRRRKYE 103
V P+ K V + G PYFVP RR + E
Sbjct: 63 PVNIPIYELKKEAIVIEEDYVFFFGIPYFVPVRRMQNE 100
>gnl|CDD|130789 TIGR01728, SsuA_fam, ABC transporter, substrate-binding protein,
aliphatic sulfonates family. Members of this family are
substrate-binding periplasmic proteins of ABC
transporters. This subfamily includes SsuA, a member of
a transporter operon needed to obtain sulfur from
aliphatic sulfonates. Related proteins outside the scope
of This model include taurine (NH2-CH2-CH2-S03H) binding
proteins, the probable sulfate ester binding protein
AtsR, and the probable aromatic sulfonate binding
protein AsfC. All these families make sulfur available
when Cys and sulfate levels are low. Please note that
phylogenetic analysis by neighbor-joining suggests that
a number of sequences belonging to this family have been
excluded because of scoring lower than taurine-binding
proteins [Transport and binding proteins, Other].
Length = 288
Score = 27.7 bits (62), Expect = 3.1
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 41 ILTGNKFWQPTSESAVVCSKHFIE--PDFVETPLRR 74
+ G P +V + F E P+ V+ L+
Sbjct: 171 LANGEGIGLPGQPGFLVVRREFAEAHPEQVQRVLKV 206
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 27.4 bits (61), Expect = 5.6
Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 14/120 (11%)
Query: 21 SYHEIPSKEPLRTNWIKQIGILTGNK--FWQPT-SESAVV---CSKHFIEPDFVETPLRR 74
+Y + NW+ GI G++ F P E ++ C K V PL
Sbjct: 51 TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLK----VGAVSVPLLP 106
Query: 75 RLKPTSVPSVFYMMQGKPYFVPSRRRK--YESPTTP--NLFPNSQHHEIVNNEGNETRDI 130
+ + V Q K +F P+ ++ P N P Q V+ T +
Sbjct: 107 SWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSL 166
>gnl|CDD|234521 TIGR04247, NosD_copper_fam, nitrous oxide reductase family
maturation protein NosD. Members of this family include
NosD, a repetitive periplasmic protein required for the
maturation of the copper-containing enzyme nitrous-oxide
reductase. NosD appears to be part of a complex with
NosF (an ABC transporter family ATP-binding protein) and
NosY (a six-helix transmembrane protein in the ABC-2
permease family). However, NosDFY-like complexes appear
to occur also in species whose copper requiring enzymes
are something other than nitrous-oxide reductase.
Length = 377
Score = 26.8 bits (60), Expect = 7.5
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 113 NSQHHEIVNNEGNETRD--IIDNS--NVIEN 139
NS + I N RD I+ S N+I N
Sbjct: 134 NSPGNVIEGNTVRGGRDGIYIEFSHHNLIRN 164
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional.
Length = 450
Score = 26.7 bits (59), Expect = 8.1
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 36 IKQIGILTGNKFWQPTSESAVVCSKHFIEPD 66
I Q GI GN W+ + C +H I+PD
Sbjct: 9 IGQAGIQVGNACWE------LYCLEHGIQPD 33
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.404
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,116,904
Number of extensions: 810360
Number of successful extensions: 623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 18
Length of query: 180
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 89
Effective length of database: 6,901,388
Effective search space: 614223532
Effective search space used: 614223532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)