RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5284
         (180 letters)



>2jtg_A THAP domain-containing protein 1; zinc finger, CCCH, DNA-binding,
          metal-binding, zinc- finger, metal binding protein; NMR
          {Homo sapiens} PDB: 2ko0_A 2l1g_A*
          Length = 87

 Score = 82.2 bits (203), Expect = 3e-21
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 1  MPPSCCVPTCKLMRNNSEKLSYHEIPSKEP-LRTNWIKQIGILTGNKFWQPTSESAVVCS 59
          M  SC    CK   +  + +S+H+ P   P L   W   +      K ++PT  S  +CS
Sbjct: 1  MVQSCSAYGCKNRYDKDKPVSFHKFPLTRPSLCKEWEAAVR----RKNFKPTKYS-SICS 55

Query: 60 KHFIEPDFVETPLRRRLKPTSVPSVF 85
          +HF    F      + LK  +VP++F
Sbjct: 56 EHFTPDCFKRECNNKLLKENAVPTIF 81


>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on
          protein structural and functional analyses; NMR {Homo
          sapiens} SCOP: g.39.1.16
          Length = 99

 Score = 81.2 bits (200), Expect = 8e-21
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 1  MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSK 60
          MP +C    C    N    +S+H  P     R  W++ +      K + P   +  +CSK
Sbjct: 8  MPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWVRLV----RRKNFVPGKHT-FLCSK 62

Query: 61 HFIEPDFVETPLRRRLKPTSVPSVF 85
          HF    F  T   RRLK  +VP++F
Sbjct: 63 HFEASCFDLTGQTRRLKMDAVPTIF 87


>2jm3_A Hypothetical protein; zinc finger, domain, metal binding protein;
          NMR {Caenorhabditis elegans}
          Length = 91

 Score = 52.5 bits (125), Expect = 7e-10
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 9/91 (9%)

Query: 1  MPPSCCVPTCK---LMRNNSEKLSYHEIPSKEP-LRTNWIKQIGILTGNKFWQPTSESAV 56
          MP +C  P CK     R   +   ++ IP +   LR  W+  I    G       S    
Sbjct: 3  MPTTCGFPNCKFRSRYRGLEDNRHFYRIPKRPLILRQRWLTAI----GRTEETVVS-QLR 57

Query: 57 VCSKHFIEPDFVETPLRRRLKPTSVPSVFYM 87
          +CS HF   +  E  +              +
Sbjct: 58 ICSAHFEGGEKKEGDIPVPDPTVDKQIKIEL 88


>3kde_C Transposable element P transposase; THAP domain, DNA-binding
          domain, zinc-finger, beta-alpha-BET element
          transposase, DNA integration; HET: BRU; 1.74A
          {Drosophila melanogaster}
          Length = 77

 Score = 39.0 bits (90), Expect = 5e-05
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 14/80 (17%)

Query: 10 CKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHFIEPDFVE 69
          CK        +    +P     R  W + +G            E++ +C  HF +  +  
Sbjct: 4  CKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGC--------SLGENSQICDTHFNDSQWKA 55

Query: 70 TPL------RRRLKPTSVPS 83
           P       RRRL   +VPS
Sbjct: 56 APAKGQTFKRRRLNADAVPS 75


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.8 bits (66), Expect = 0.49
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 22/76 (28%)

Query: 47  FW--QPTSESAVVCSKHFIEP------DFVETPLRRRLKPTSVPSVFYMMQG-------- 90
           FW      E  V   + F+E        F+ +P++   +  S+ +  Y+ Q         
Sbjct: 68  FWTLLSKQEEMV---QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 91  --KPYFVPSRRRKYES 104
               Y V  R + Y  
Sbjct: 125 VFAKYNVS-RLQPYLK 139


>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI,
           protein structure initiative, northeast structural
           genomics consortium, NESG; 2.50A {Thermotoga maritima}
           SCOP: c.129.1.1
          Length = 195

 Score = 27.7 bits (62), Expect = 1.5
 Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 7/43 (16%)

Query: 35  WIKQIGILTGNKFWQPTSESAVVCSKHFIEPD------FVETP 71
             K + +L G   W       ++    +++           T 
Sbjct: 141 LGKPVILLRGTGGWTDRISQVLI-DGKYLDNRRIVEIHQAWTV 182


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.1 bits (56), Expect = 5.4
 Identities = 5/16 (31%), Positives = 8/16 (50%), Gaps = 3/16 (18%)

Query: 72 LRRRLK---PTSVPSV 84
          L+  LK     S P++
Sbjct: 25 LQASLKLYADDSAPAL 40


>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
          microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
          {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
          3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
          3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
          2wbe_A* 3dco_A* ...
          Length = 451

 Score = 25.9 bits (57), Expect = 8.6
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 6/29 (20%)

Query: 38 QIGILTGNKFWQPTSESAVVCSKHFIEPD 66
          Q G+  GN  W+      + C +H I+PD
Sbjct: 11 QAGVQIGNACWE------LYCLEHGIQPD 33


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,711,193
Number of extensions: 146179
Number of successful extensions: 299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 13
Length of query: 180
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 92
Effective length of database: 4,244,745
Effective search space: 390516540
Effective search space used: 390516540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)