RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5284
         (180 letters)



>d2d8ra1 g.39.1.16 (A:8-93) THAP domain-containing protein 2
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 86

 Score = 79.0 bits (194), Expect = 2e-20
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 1  MPPSCCVPTCKLMRNNSEKLSYHEIPSKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSK 60
          MP +C    C    N    +S+H  P     R  W++ +      K + P      +CSK
Sbjct: 1  MPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWVRLV----RRKNFVPGK-HTFLCSK 55

Query: 61 HFIEPDFVETPLRRRLKPTSVPSVF 85
          HF    F  T   RRLK  +VP++F
Sbjct: 56 HFEASCFDLTGQTRRLKMDAVPTIF 80


>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 245

 Score = 29.9 bits (67), Expect = 0.14
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 6/84 (7%)

Query: 38  QIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPS 97
           Q G+  GN  W+      + C +H I+PD      +         + F+   G    VP 
Sbjct: 11  QAGVQIGNACWE------LYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPR 64

Query: 98  RRRKYESPTTPNLFPNSQHHEIVN 121
                  PT  +      + ++ +
Sbjct: 65  AVFVDLEPTVIDEVRTGTYRQLFH 88


>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 243

 Score = 28.0 bits (62), Expect = 0.51
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 8/85 (9%)

Query: 38  QIGILTGNKFWQPTSESAVVCSKHFIEPDFVETPLRRRLKPTSVPSVFYMMQGKPYFVPS 97
           Q G   G KFW+      V+  +H I+P    +            +V+Y       +VP 
Sbjct: 11  QCGNQIGAKFWE------VISDEHGIDPT--GSYHGDSDLQLERINVYYNEAAGNKYVPR 62

Query: 98  RRRKYESPTTPNLFPNSQHHEIVNN 122
                  P T +   +    +I   
Sbjct: 63  AILVDLEPGTMDSVRSGPFGQIFRP 87


>d1p4pa_ b.76.1.1 (A:) Outer surface protein B {Lyme disease
          spirochete (Borrelia burgdorferi) [TaxId: 139]}
          Length = 140

 Score = 26.7 bits (59), Expect = 0.95
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 8/59 (13%)

Query: 11 KLMRNNSEKLSYHEIP-------SKEPLRTNWIKQIGILTGNKFWQPTSESAVVCSKHF 62
          KL R+N   L Y +I        + E L+ N IK  G L   K      E  V   +  
Sbjct: 3  KLTRSNGTTLEYSQITDADNATKAVETLK-NSIKLEGSLVVGKTTVEIKEGTVTLKREI 60


>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 570

 Score = 25.8 bits (56), Expect = 3.5
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 102 YESPTTPNLFPNSQHHEIVNNEGNETRDII-DNSNVIENSKYDAFLQASF 150
           +E+     +F   Q   +          II DN+ +   SK + F+  S+
Sbjct: 506 WENEG---VFSMQQRQALAQISL---PRIICDNTGITTVSKNNIFMSNSY 549


>d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase
           {Leptospira interrogans [TaxId: 173]}
          Length = 362

 Score = 25.5 bits (55), Expect = 3.8
 Identities = 6/26 (23%), Positives = 12/26 (46%)

Query: 2   PPSCCVPTCKLMRNNSEKLSYHEIPS 27
           PP+      K +    +++ Y E+ S
Sbjct: 311 PPAQSREIVKSLEAADKRVFYVELQS 336


>d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase
           {Haemophilus influenzae [TaxId: 727]}
          Length = 357

 Score = 25.5 bits (55), Expect = 4.0
 Identities = 6/26 (23%), Positives = 12/26 (46%)

Query: 2   PPSCCVPTCKLMRNNSEKLSYHEIPS 27
            P     + +L+  +   L ++E PS
Sbjct: 307 KPIDLYKSKQLLEQSGVDLHFYEFPS 332


>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
          dejongeii [TaxId: 48465]}
          Length = 244

 Score = 24.6 bits (53), Expect = 7.7
 Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 6/29 (20%)

Query: 38 QIGILTGNKFWQPTSESAVVCSKHFIEPD 66
          Q G      FW+       VC +H I+P 
Sbjct: 11 QAGNQIAASFWK------TVCLEHGIDPL 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 675,232
Number of extensions: 29281
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 11
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)