RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5286
(311 letters)
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate
2-O-sulfotransferase 1; maltose binding protein, fusion,
heparan sulfate biosynthesis; HET: GLC A3P; 2.65A
{Escherichia coli k-12}
Length = 658
Score = 349 bits (897), Expect = e-116
Identities = 161/285 (56%), Positives = 214/285 (75%), Gaps = 2/285 (0%)
Query: 27 DTVIIYNRVPKTGSTSFVNMAYDMCRKKRFNVLHVNVTGNNHVLSLADQYRFVNNVTKWR 86
D VIIYNRVPKT STSF N+AYD+C K R++VLH+N T NN V+SL DQ RFV NVT W+
Sbjct: 375 DVVIIYNRVPKTASTSFTNIAYDLCAKNRYHVLHINTTKNNPVMSLQDQVRFVKNVTSWK 434
Query: 87 DRRPALYHGHFGFIDFQQFGSKEQPLFINILRKPLDRLVSYYYFLRYGDNYRPHLVRKKH 146
+ +P YHGH ++DF +FG K++P++IN++R P++RLVSYYYFLR+GD+YRP L R+K
Sbjct: 435 EMKPGFYHGHVSYLDFAKFGVKKKPIYINVIRDPIERLVSYYYFLRFGDDYRPGLRRRKQ 494
Query: 147 GDKTTFDECIRLNRTECSLENMWLQVPFLCGHAAACWVPGNPWALEKAKENLVTKYLLVG 206
GDK TFDEC+ ++C+ E +WLQ+PF CGH++ CW G+ WALE+AK NL+ +Y LVG
Sbjct: 495 GDKKTFDECVAAGGSDCAPEKLWLQIPFFCGHSSECWNVGSRWALEQAKYNLINEYFLVG 554
Query: 207 VTEELTDFVSLLEAALPSFFRGGTDHFLTSNKSHLRRTNRKIDPSEETVQQIKKSKIWEL 266
VTEEL DF+ LLEAALP FFRG T+ + T KSHLR+T K P+ T+ ++++S+IW++
Sbjct: 555 VTEELEDFIMLLEAALPRFFRGATELYRTGKKSHLRKTTEKKLPTAATIAKLQQSEIWKM 614
Query: 267 ENELYEYALEQFHFVKKHNLVYNKVLGYEADKGKQFMYEKIYPKP 311
ENE YE+ALEQF FV+ H + + G + F YEKIYPK
Sbjct: 615 ENEFYEFALEQFQFVRAHAV--REKDGELYILAQNFFYEKIYPKS 657
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 2e-05
Identities = 53/281 (18%), Positives = 82/281 (29%), Gaps = 104/281 (37%)
Query: 89 RP-ALYHGHF---------GFIDFQQFGSKEQPLFINILRKPLDRLVS----------YY 128
RP L HG F Q +EQ F IL +P + +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQL--QEQ--FNKILPEPTEGFAADDEPTTPAELVG 62
Query: 129 YFLRYGDNYRPHLVRKKHGDKTTFDECIR--LNRTECSLENMWLQVPFLCG---HAAACW 183
FL Y LV FD+ + L E +L G HA A
Sbjct: 63 KFLGYVS----SLVEP--SKVGQFDQVLNLCLTEFENC---------YLEGNDIHALAAK 107
Query: 184 VPGNPWALEKAKENLVTKYL----LVGVTEELTDFVSLLEAA------LPSFFRGG---T 230
+ + L+ Y+ + + +L A L + F GG T
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF-GGQGNT 166
Query: 231 DHFL-------TSNKSHLRRTNRKIDPSEETVQQIKKSKI--------------WELENE 269
D + + + I S ET+ ++ ++ + W LEN
Sbjct: 167 DDYFEELRDLYQTYHVLVGDL---IKFSAETLSELIRTTLDAEKVFTQGLNILEW-LENP 222
Query: 270 L----YEY-----------ALEQF-HFVKKHNLVYNKVLGY 294
+Y + Q H+V V K+LG+
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYV-----VTAKLLGF 258
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.025
Identities = 7/19 (36%), Positives = 9/19 (47%), Gaps = 5/19 (26%)
Query: 256 QQIKKSKIWELENELYEYA 274
Q +KK L+ L YA
Sbjct: 20 QALKK-----LQASLKLYA 33
>3ckl_A Sulfotransferase family cytosolic 1B member 1; SULT1B1, human
cytosolic sulfotransferase, resveratrol, SGC, cytoplasm,
lipid metabolism; HET: STL A3P; 2.00A {Homo sapiens}
PDB: 2z5f_A*
Length = 298
Score = 31.3 bits (71), Expect = 0.31
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 9/51 (17%)
Query: 108 KEQPLFINILRKPLDRLVSYYYFLRYGDNYRPHLVRKKHGDKTTFDECIRL 158
+ I + R D VSYY+F T++E +
Sbjct: 123 ENNCKMIYLARNAKDVSVSYYHFDLM---------NNLQPFPGTWEEYLEK 164
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein
structure initiative, structural genomics consortium,
SGC, alternative splicing; HET: A3P; 1.80A {Homo
sapiens} SCOP: c.37.1.5
Length = 296
Score = 31.2 bits (71), Expect = 0.32
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 108 KEQPLFINILRKPLDRLVSYYYFLRYGDNYRPHLVRKKHGDKTTFDECIRL 158
+ F+ + R D +VSYY+F R + D T++E
Sbjct: 121 ENNCKFLYVARNAKDCMVSYYHFQR---------MNHMLPDPGTWEEYFET 162
>1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive
cooperativity, two substrate binding sites; HET: A3P
NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A*
3u3o_A* 3u3k_A* 3u3m_A* 3u3j_A* 3u3r_A* 1z28_A* 3qvv_A*
3qvu_A* 1z29_A* 1cjm_A 2a3r_A*
Length = 295
Score = 31.3 bits (71), Expect = 0.33
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 108 KEQPLFINILRKPLDRLVSYYYFLRYGDNYRPHLVRKKHGDKTTFDECIRL 158
++ + + R D VSYY+F K H + T+D +
Sbjct: 120 DQKVKVVYVARNAKDVAVSYYHFYHM---------AKVHPEPGTWDSFLEK 161
>1j99_A Alcohol sulfotransferase; dehydroepiandosterone, DHEA; HET: AND;
1.99A {Homo sapiens} SCOP: c.37.1.5 PDB: 1ov4_A* 3f3y_A*
2qp3_A* 2qp4_A* 1efh_A*
Length = 293
Score = 31.2 bits (71), Expect = 0.37
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 108 KEQPLFINILRKPLDRLVSYYYFLR 132
+ I ++R P D LVS Y+F +
Sbjct: 119 SSKAKVIYLMRNPRDVLVSGYFFWK 143
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: d.15.1.2
Length = 90
Score = 29.5 bits (66), Expect = 0.39
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 18 SPETDSLSWDTVIIYN----RVPKTGSTSFVNMAYDMCRKKRFNVLHVNVTGNNHVLSLA 73
+P S +V+ N V T ST + + D CR++ FN ++ VL L+
Sbjct: 3 APAGGGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLS 62
Query: 74 DQYRFVN 80
Q+RF N
Sbjct: 63 LQWRFAN 69
>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural
genom consortium, SGC; HET: A3P; 2.65A {Homo sapiens}
PDB: 2h8k_A*
Length = 305
Score = 30.5 bits (69), Expect = 0.59
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 108 KEQPLFINILRKPLDRLVSYYYFLRYGDNYRPHLVRKKHGDKTTFDECIRL 158
KE + + R P D LVSYY+F R + D +E
Sbjct: 130 KENCKIVYVARNPKDCLVSYYHFHR---------MASFMPDPQNLEEFYEK 171
>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural
genomics conso transferase; 2.24A {Homo sapiens}
Length = 284
Score = 30.5 bits (69), Expect = 0.66
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 9/45 (20%)
Query: 114 INILRKPLDRLVSYYYFLRYGDNYRPHLVRKKHGDKTTFDECIRL 158
I + R P D +VSYY F R + + TF E R
Sbjct: 129 IYMARNPKDLVVSYYQFHR---------SLRTMSYRGTFQEFCRR 164
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered
binding protein, antibody mimic, synthetic protein
interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A*
3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*
Length = 461
Score = 30.6 bits (69), Expect = 0.72
Identities = 4/39 (10%), Positives = 10/39 (25%)
Query: 77 RFVNNVTKWRDRRPALYHGHFGFIDFQQFGSKEQPLFIN 115
+ P + + + + P+ IN
Sbjct: 420 PGSKSTATISGLSPGVDYTITVYAYSYYYYYYSSPISIN 458
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.74
Identities = 49/332 (14%), Positives = 103/332 (31%), Gaps = 85/332 (25%)
Query: 48 YDMCRKKRFNVLHVNVTGNNHVLSLADQYRFVNNVTKWRDRRPALYHGHFG------FID 101
+ K+ ++ V L Y+F+ + K R+P++ + + D
Sbjct: 68 FWTLLSKQEEMVQKFVEE-----VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 102 FQQFG----SKEQPLFINILRKPLDRLVSYYYFLRYG-----------DNYRPHLVRKKH 146
Q F S+ QP LR+ L L L G D + V+ K
Sbjct: 123 NQVFAKYNVSRLQP--YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 147 GDKT---TFDECIRLNRTECSLENMWLQV--PFLCGHAAACWVPGNPWALEKAKENLVT- 200
K C L+ + Q+ + + + +++ L+
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 201 -KY---LLV---------------G----VT---EELTDFVS-------LLEAALPSFFR 227
Y LLV +T +++TDF+S L+ +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 228 GGTDH----FLTSNKSHLRRTNRKIDPSEETVQQIKKSKIWEL---ENELYEYALEQFHF 280
+L L R +P +++ S I E ++ + +
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNP-----RRL--SIIAESIRDGLATWDN-WKHVNC 352
Query: 281 VKKHNLVYNKVLGYEADKGKQFMYEK--IYPK 310
K ++ + + E + ++ M+++ ++P
Sbjct: 353 DKLTTIIESSLNVLEPAEYRK-MFDRLSVFPP 383
Score = 29.1 bits (64), Expect = 2.2
Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 28/127 (22%)
Query: 42 SFVNMAYDMCRKKRFNVLHVNVTGN---NHV---LSLADQ-------------YRFVNNV 82
S V+ Y++ + + L +H+ L + +RF+
Sbjct: 448 SIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ- 505
Query: 83 TKWRDRRPALYHGHFGFIDFQQFGSKEQPLFINILRKPLDRLV-SYYYFLRYGDNYRPHL 141
K R A QQ + +I +RLV + FL +L
Sbjct: 506 -KIRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKYERLVNAILDFLP---KIEENL 559
Query: 142 VRKKHGD 148
+ K+ D
Sbjct: 560 ICSKYTD 566
Score = 27.9 bits (61), Expect = 5.0
Identities = 39/292 (13%), Positives = 81/292 (27%), Gaps = 99/292 (33%)
Query: 26 WDTV--IIYNRVPKTGSTSFVNM-AYDMCRKKRFNVL-----HVNVTGNNHVLSL----- 72
WD + +++ +S + + +K F+ L ++ +LSL
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEY--RKMFDRLSVFPPSAHIP--TILLSLIWFDV 399
Query: 73 --ADQYRFVNNVTKW----RDRRPALYHGHFGFIDFQQFGSKEQPLFINILRKPLDRLVS 126
+D VN + K+ + + + +++ + E L +V
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--------RSIVD 451
Query: 127 YYYFLRYGDNYRPHLVRKKHGDKTTFDECIRLNRTECSLENMWLQVPFLCGHAAACWVPG 186
+Y + + + + D + + H
Sbjct: 452 HYNIPK---TFDSDDLIPPYLD------------------QYFYS--HIGHHLKNI---- 484
Query: 187 NPWALEKAKE-NLVTKYLLVGVTEELTDFVSLLEAALPSFFRGGTDHFLTSNKSHLRRTN 245
E + L L DF FL K +R +
Sbjct: 485 -----EHPERMTLFRMVFL--------DF-----------------RFL-EQK--IRHDS 511
Query: 246 ---RKIDPSEETVQQIKKSKIW----ELENELYEYALEQFHFVKKHNLVYNK 290
T+QQ+K K + + + E A+ F + NL+ +K
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
>2gwh_A Sulfotransferase 1C2; sulfate conjugation, pentachlorophenol, PA
pesticide, structural genomics, structural genomics
consort transferase; HET: A3P PCI; 1.80A {Homo sapiens}
PDB: 2ad1_A*
Length = 298
Score = 30.2 bits (68), Expect = 0.79
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 89 RPALYHGHFGFIDFQQFGSKEQPLFINILRKPLDRLVSYYYFLR 132
P + H F ++ I + R P D +VSYY+F R
Sbjct: 104 SPRILKTHLPFHLLPPSLLEKNCKIIYVARNPKDNMVSYYHFQR 147
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine,
sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB:
2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Length = 295
Score = 30.1 bits (68), Expect = 0.87
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 114 INILRKPLDRLVSYYYFLRYGDNYRPHLVRKKHGDKTTFDECIRL 158
I + R D +VSYYYF + K H + T++E +
Sbjct: 126 IYVARNAKDVVVSYYYFYQM---------AKIHPEPGTWEEFLEK 161
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 29.8 bits (67), Expect = 0.96
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
Query: 114 INILRKPLDRLVSYYYFLRYGDNYRPHLVRKKHGDKTTFDECIRL 158
I + R P D +VS Y++ + + D T D+ +R
Sbjct: 128 IYMGRNPRDVVVSLYHYSKI---------AGQLKDPGTPDQFLRD 163
>1q44_A RARO47, steroid sulfotransferase, AT2G03760/; APO, structu
genomics, protein structure initiative, center for
eukaryot structural genomics; 1.90A {Arabidopsis
thaliana} SCOP: c.37.1.5 PDB: 2q3m_A
Length = 326
Score = 29.8 bits (67), Expect = 0.96
Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 8/45 (17%)
Query: 114 INILRKPLDRLVSYYYFLRYGDNYRPHLVRKKHGDKTTFDECIRL 158
+ R P D VS ++F + + + ++ +
Sbjct: 158 VYCCRNPKDMFVSLWHFGK--------KLAPEETADYPIEKAVEA 194
>1aqu_A EST, estrogen sulfotransferase; PAP, sulfonation, 17-beta
estradiol, steroid-binding; HET: A3P EST; 1.60A {Mus
musculus} SCOP: c.37.1.5 PDB: 1aqy_A* 1bo6_A* 1hy3_A*
1g3m_A*
Length = 297
Score = 29.0 bits (65), Expect = 1.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 114 INILRKPLDRLVSYYYFLR 132
I + R D VSYYYFL
Sbjct: 128 IYLCRNAKDVAVSYYYFLL 146
>1q20_A SULT2B1B, sulfotransferase family, cytosolic, 2B, member 1 isoform
B; pregnenolone, cholesterol, PAP; HET: A3P PLO; 2.30A
{Homo sapiens} SCOP: c.37.1.5 PDB: 1q1z_A* 1q22_A*
Length = 299
Score = 29.0 bits (65), Expect = 2.0
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 114 INILRKPLDRLVSYYYFLRYGDNYRPHLVRKKHGDKTTFDECIRL 158
I + R P D +VS Y++ + + + D T D+ +R
Sbjct: 130 IYMGRNPRDVVVSLYHYSK---------IAGQLKDPGTPDQFLRD 165
>3mgb_A TEG12; sulfotransferase, glycopeptide, antibiotic, transferase-anti
complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured
soil bacterium} PDB: 3mgc_A* 3mg9_A* 3nib_A*
Length = 319
Score = 28.6 bits (64), Expect = 2.8
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 114 INILRKPLDRLVSYYYFLR 132
+ ++R P D L+S
Sbjct: 120 LYLVRNPRDMLLSSMRMAS 138
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding,
cell inner MEM cell membrane, kinase, membrane,
nucleotide-binding; 2.50A {Escherichia coli}
Length = 222
Score = 27.9 bits (63), Expect = 3.3
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 177 GHAAACWVPGNPWALEKAKENLV 199
+A + G P L NL+
Sbjct: 104 LNAHSIKRTGQPLLLSLLVRNLL 126
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric
sandwich hydrolase; 1.66A {Nesterenkonia SP}
Length = 283
Score = 28.0 bits (63), Expect = 3.4
Identities = 5/26 (19%), Positives = 8/26 (30%), Gaps = 2/26 (7%)
Query: 70 LSLADQYRFVNNVTKWRDRRPALYHG 95
D + +DRR L+
Sbjct: 258 DQSQDAGSDSADY--LQDRRAELHRN 281
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus
abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Length = 262
Score = 28.0 bits (63), Expect = 4.3
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 70 LSLADQYRFVNNVTKWRDRRPALY 93
LSL R + ++DRR Y
Sbjct: 237 LSLVRNKRINDLNDIFKDRREEYY 260
>3iz5_O 60S ribosomal protein L27A (L15P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_O
Length = 144
Score = 26.9 bits (59), Expect = 5.4
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 237 NKSHLRRTNRKIDPSEETVQQIKKSKIWELENELYEYALEQFHFVKKHNLVYNKVLG 293
K +R +R + + ++W + + + Y KVLG
Sbjct: 54 GKVGMRYFHRLSNRFHCPA--VNVERLWSMVPAEAGAGAGKAPVIDVTQFGYTKVLG 108
>1fmj_A Retinol dehydratase; sulfotransferase, adenosine 3',5'-
diphosphate; HET: A3P RTL; 2.00A {Spodoptera frugiperda}
SCOP: c.37.1.5 PDB: 1fml_A* 1x8l_A* 1x8k_A* 1x8j_A*
Length = 351
Score = 27.3 bits (60), Expect = 6.8
Identities = 7/62 (11%), Positives = 18/62 (29%), Gaps = 9/62 (14%)
Query: 108 KEQPLFINILRKPLDRLVSYYYFLRYGDNYRPHLVRKKHGDKTTFDECIRLNRTECSLEN 167
+ + + R P D VS ++ R + ++ F + +
Sbjct: 175 LDTVKMVYLARDPRDVAVSSFHHAR---------LLYLLNKQSNFKDFWEMFHRGLYTLT 225
Query: 168 MW 169
+
Sbjct: 226 PY 227
>1t8t_A Heparan sulfate D-glucosaminyl 3-O- sulfotransferase 3A1;
alpha-beta motif, substrate-binding cleft; HET: A3P CIT;
1.85A {Homo sapiens} SCOP: c.37.1.5 PDB: 1t8u_A*
Length = 271
Score = 27.1 bits (59), Expect = 7.2
Identities = 19/140 (13%), Positives = 40/140 (28%), Gaps = 21/140 (15%)
Query: 35 VPKTGSTSFVNM-----AYDMCRKKRFNVLHVNVTGNNHVLSLADQYRFVNNVTKWRDRR 89
V K G+ + + + + + + + D + ++
Sbjct: 25 VKKGGTRALLEFLRVHPDVRAVGAE---PHFFDRSYDKGLAWYRDLMPRTLDGQITMEKT 81
Query: 90 PALYHGHFGFIDFQQFGSKEQPLFINILRKPLDRLVSYYYFLRYGDNYRPHLVRKKHGDK 149
P+ + + I ++R P+ R +S Y K D
Sbjct: 82 PSYFVTREAPARISAMSKDTK--LIVVVRDPVTRAISDYTQT-----------LSKRPDI 128
Query: 150 TTFDECIRLNRTECSLENMW 169
TF+ NRT ++ W
Sbjct: 129 PTFESLTFKNRTAGLIDTSW 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.425
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,863,612
Number of extensions: 287264
Number of successful extensions: 576
Number of sequences better than 10.0: 1
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 37
Length of query: 311
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 218
Effective length of database: 4,105,140
Effective search space: 894920520
Effective search space used: 894920520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.3 bits)