RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5286
(311 letters)
>d3bfxa1 c.37.1.5 (A:12-296) Sulfotransferase Sult1c2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 30.5 bits (68), Expect = 0.25
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 1/98 (1%)
Query: 36 PKTGSTSFVNMAYDMCRKKRFNVLHVNVTGNNHVLSLADQYRFVNNVTKWRDR-RPALYH 94
PK G+T + + + + + H + + V K + P +
Sbjct: 37 PKAGTTWIQEIVDMIEQNGDVEKCQRAIIQHRHPFIEWARPPQPSGVEKAKAMPSPRILK 96
Query: 95 GHFGFIDFQQFGSKEQPLFINILRKPLDRLVSYYYFLR 132
H + F+ + R D +VSYY+F R
Sbjct: 97 THLSTQLLPPSFWENNCKFLYVARNAKDCMVSYYHFQR 134
>d1j99a_ c.37.1.5 (A:) Hydroxysteroid sulfotransferase sult2a1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 29.1 bits (64), Expect = 0.64
Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 4/105 (3%)
Query: 36 PKTGSTSFVNMAYDMCRKKRFNVLHVNVTGNNHVLSLADQYRFVNNVTKWRDRRPALYHG 95
PK+G+ + M K + +V + + + P L+
Sbjct: 42 PKSGTNWLAEILCLMHSKGDAKWIQ-SVPIWERSPWVESEIGYTAL---SETESPRLFSS 97
Query: 96 HFGFIDFQQFGSKEQPLFINILRKPLDRLVSYYYFLRYGDNYRPH 140
H F + + I ++R P D LVS Y+F + +
Sbjct: 98 HLPIQLFPKSFFSSKAKVIYLMRNPRDVLVSGYFFWKNMKFLKKP 142
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 262
Score = 28.8 bits (63), Expect = 0.73
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 70 LSLADQYRFVNNVTKWRDRRPALYH 94
L+LA R + ++DRR Y
Sbjct: 237 LNLARNKRLNDMNDIFKDRREEYYF 261
>d1ls6a_ c.37.1.5 (A:) Aryl sulfotransferase sult1a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 27.1 bits (59), Expect = 2.7
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 1/98 (1%)
Query: 36 PKTGSTSFVNMAYDMCRKKRFNVLHVNVTGNNHVLSLADQYRFVNNVTKWRDR-RPALYH 94
PK+G+T + + + H + + +D P L
Sbjct: 40 PKSGTTWVSQILDMIYQGGDLEKCHRAPIFMRVPFLEFKAPGIPSGMETLKDTPAPRLLK 99
Query: 95 GHFGFIDFQQFGSKEQPLFINILRKPLDRLVSYYYFLR 132
H Q ++ + + R D VSYY+F
Sbjct: 100 THLPLALLPQTLLDQKVKVVYVARNAKDVAVSYYHFYH 137
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component
SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 129
Score = 26.3 bits (58), Expect = 3.0
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 243 RTNRKID------PSEETVQQIKKSKIWELENELYEYALEQFHFVKKHNLVYNKV 291
R+I+ P + + + KI L+ +L E E+ +KK + V
Sbjct: 67 LKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHV 121
>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 26.8 bits (58), Expect = 3.7
Identities = 32/265 (12%), Positives = 73/265 (27%), Gaps = 27/265 (10%)
Query: 35 VPKTGSTSFVNMAYD----MCRKKRFNVLHVNVTGNNHVLSLADQYRFVNNVTKWRDRRP 90
V K G+ + + M + + + + Q F + ++ P
Sbjct: 13 VRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLGWYLTQMPFSSPHQLTVEKTP 72
Query: 91 ALYHGHFGFIDFQQFGSKEQPLFINILRKPLDRLVSYYYFLRYGDNYRPHLVRKKHGDKT 150
A + + + ILR P +R++S Y + Y KH
Sbjct: 73 AYFTSPKVPERIHSMNPTIR--LLLILRDPSERVLSDYTQVLYNHLQ-------KHKPYP 123
Query: 151 TFDECIRLNRTECSLENMWLQVPFLCGHAAACWVPGNPWALEKAKENLVTKYLLVGVTEE 210
++ + + + + + L+ ++
Sbjct: 124 PIEDLLMRDGRLNLDYKALNRSLYHAHMLNWLRFFPLGHIHIVDGDRLIRDP--FPEIQK 181
Query: 211 LTDFVSLLEAALPSFFRGGTDHFLTSNKSHLRRTNRKIDPSEETVQQIKKSKIWELENEL 270
+ F+ L S F K + D + + K +++ +L
Sbjct: 182 VERFLKLSPQINASNFY------FNKTKGFYCLRDSGKDRC---LHESKGRAHPQVDPKL 232
Query: 271 YEYALEQFHFVKKHNLVYNKVLGYE 295
+ E F + N + K++G
Sbjct: 233 LDKLHEYF---HEPNKKFFKLVGRT 254
>d1szha_ a.226.1.1 (A:) Her-1 {Caenorhabditis elegans [TaxId: 6239]}
Length = 147
Score = 25.8 bits (56), Expect = 4.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 149 KTTFDECIRLNRTECSLENMWLQVPFLCGHAAACWVPG 186
K ++C NR EC +E M P CG+ +PG
Sbjct: 9 KDAAEKCCTRNRQECCIEIMKFGTPIRCGYDRDPKLPG 46
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4
(Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 23.9 bits (52), Expect = 8.5
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 35 VPKTGSTSFVNMAYDMCRKKRFNVLHVNVTGNNHVLSLADQYRFVN 80
V T ST + + D CR++ FN ++ VL L+ Q+RF N
Sbjct: 15 VKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFAN 60
>d1t8ta_ c.37.1.5 (A:) Heparan sulfate glucosamine
3-O-sulfotransferase 3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 25.3 bits (54), Expect = 9.6
Identities = 33/223 (14%), Positives = 64/223 (28%), Gaps = 27/223 (12%)
Query: 74 DQYRFVNNVTKWRDRRPALYHGHFGFIDFQQFGSKEQPLFINILRKPLDRLVSYYYFLRY 133
D + ++ P+ + + I ++R P+ R +S Y
Sbjct: 66 DLMPRTLDGQITMEKTPSYFVTREAPARISAMSKDTK--LIVVVRDPVTRAISDYTQTLS 123
Query: 134 GDNYRPHLVRKKHGDKTTFDECIRLNRTECSLENMWLQVPF-LCGHAAACWVPGNPWALE 192
K D TF+ NRT ++ W + + W+ P
Sbjct: 124 -----------KRPDIPTFESLTFKNRTAGLIDTSWSAIQIGIYAKHLEHWLRHFPIRQM 172
Query: 193 KAK--ENLVTKYLLVGVTEELTDFVSLLEAALPSFFRGGTDHFLTSNKSHLRRTNRKIDP 250
E L++ G + DF+ L F K +
Sbjct: 173 LFVSGERLISDP--AGELGRVQDFLGLKRIITDKHFY------FNKTKGFPCLKKAEGSS 224
Query: 251 SEETVQQIKKSKIWELENELYEYALEQFHFVKKHNLVYNKVLG 293
+ + K E++ E+ E + + NL + ++ G
Sbjct: 225 RPHCLGKTKGRTHPEIDREVVRRLREFY---RPFNLKFYQMTG 264
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.425
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,223,477
Number of extensions: 58261
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 17
Length of query: 311
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,240,546
Effective search space: 280363396
Effective search space used: 280363396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)