BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5287
(65 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W334|RS28_DROME 40S ribosomal protein S28 OS=Drosophila melanogaster GN=RpS28b
PE=3 SV=2
Length = 65
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 1 MDKQVVLARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESERE 60
MDK VV ARV+K LGRTGSQGQCTQVKVEF+G+QNR IIRNVKGPVREGDILTLLESERE
Sbjct: 1 MDKPVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDILTLLESERE 60
Query: 61 ARRLR 65
ARRLR
Sbjct: 61 ARRLR 65
>sp|Q962Q2|RS28_SPOFR 40S ribosomal protein S28 OS=Spodoptera frugiperda GN=RpS28 PE=3
SV=1
Length = 65
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 60/65 (92%)
Query: 1 MDKQVVLARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESERE 60
MDK VLARV+K LGRTGSQGQCTQVKVEFIG+ +R IIRNVKGPVR+GDILTLLESERE
Sbjct: 1 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILTLLESERE 60
Query: 61 ARRLR 65
ARRLR
Sbjct: 61 ARRLR 65
>sp|Q6EV21|RS28_PAPDA 40S ribosomal protein S28 OS=Papilio dardanus GN=RpS28 PE=3 SV=1
Length = 65
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 60/65 (92%)
Query: 1 MDKQVVLARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESERE 60
MDK VLARV+K LGRTGSQGQCTQVKVEFIG+ +R IIRNVKGPVR+GDILTLLESERE
Sbjct: 1 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILTLLESERE 60
Query: 61 ARRLR 65
ARRLR
Sbjct: 61 ARRLR 65
>sp|Q6PS50|RS28_BOMMO 40S ribosomal protein S28 OS=Bombyx mori GN=RpS28 PE=3 SV=1
Length = 65
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 60/65 (92%)
Query: 1 MDKQVVLARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESERE 60
MDK VLARV+K LGRTGSQGQCTQVKVEFIG+ +R IIRNVKGPVR+GDILTLLESERE
Sbjct: 1 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILTLLESERE 60
Query: 61 ARRLR 65
ARRLR
Sbjct: 61 ARRLR 65
>sp|Q95Y04|RS28_CAEEL 40S ribosomal protein S28 OS=Caenorhabditis elegans GN=rps-28
PE=3 SV=1
Length = 65
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/66 (84%), Positives = 60/66 (90%), Gaps = 2/66 (3%)
Query: 1 MDKQVVLARVIKTLGRTGSQGQCTQVKVEFIGDQN-RTIIRNVKGPVREGDILTLLESER 59
MDK + LARV K +GRTGSQGQCTQV+VEFI DQN R+IIRNVKGPVREGDILTLLESER
Sbjct: 1 MDK-LTLARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILTLLESER 59
Query: 60 EARRLR 65
EARRLR
Sbjct: 60 EARRLR 65
>sp|Q90YP3|RS28_ICTPU 40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3
SV=1
Length = 69
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/59 (86%), Positives = 55/59 (93%)
Query: 7 LARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESEREARRLR 65
LARV K LGRTGSQGQCTQV+VEF+ D NR+IIRNVKGPVREGD+LTLLESEREARRLR
Sbjct: 11 LARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRLR 69
>sp|Q6PBK3|RS28_DANRE 40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1
Length = 69
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/59 (86%), Positives = 55/59 (93%)
Query: 7 LARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESEREARRLR 65
LARV K LGRTGSQGQCTQV+VEF+ D NR+IIRNVKGPVREGD+LTLLESEREARRLR
Sbjct: 11 LARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRLR 69
>sp|P62859|RS28_RAT 40S ribosomal protein S28 OS=Rattus norvegicus GN=Rps28 PE=1 SV=1
Length = 69
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 55/59 (93%)
Query: 7 LARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESEREARRLR 65
LARV K LGRTGSQGQCTQV+VEF+ D +R+IIRNVKGPVREGD+LTLLESEREARRLR
Sbjct: 11 LARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR 69
>sp|Q6QAT1|RS28_PIG 40S ribosomal protein S28 OS=Sus scrofa GN=RPS28 PE=3 SV=2
Length = 69
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 55/59 (93%)
Query: 7 LARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESEREARRLR 65
LARV K LGRTGSQGQCTQV+VEF+ D +R+IIRNVKGPVREGD+LTLLESEREARRLR
Sbjct: 11 LARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR 69
>sp|P62858|RS28_MOUSE 40S ribosomal protein S28 OS=Mus musculus GN=Rps28 PE=2 SV=1
Length = 69
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 55/59 (93%)
Query: 7 LARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESEREARRLR 65
LARV K LGRTGSQGQCTQV+VEF+ D +R+IIRNVKGPVREGD+LTLLESEREARRLR
Sbjct: 11 LARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR 69
>sp|P62857|RS28_HUMAN 40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1
Length = 69
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 55/59 (93%)
Query: 7 LARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESEREARRLR 65
LARV K LGRTGSQGQCTQV+VEF+ D +R+IIRNVKGPVREGD+LTLLESEREARRLR
Sbjct: 11 LARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR 69
>sp|Q56JX6|RS28_BOVIN 40S ribosomal protein S28 OS=Bos taurus GN=RPS28 PE=3 SV=1
Length = 69
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 55/59 (93%)
Query: 7 LARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESEREARRLR 65
LARV K LGRTGSQGQCTQV+VEF+ D +R+IIRNVKGPVREGD+LTLLESEREARRLR
Sbjct: 11 LARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR 69
>sp|O61590|RS28_OSTOS 40S ribosomal protein S28 OS=Ostertagia ostertagi GN=rps-28 PE=3
SV=1
Length = 66
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
Query: 1 MDKQVVLARVIKTLGRTGSQGQCTQVKVEFIGDQ-NRTIIRNVKGPVREGDILTLLESER 59
MDK V A V K +GRTGSQGQCTQV+VEF+ D NRTI RNVKGPVREGDILTLLE+ER
Sbjct: 1 MDKPVKPAXVTKNIGRTGSQGQCTQVRVEFMDDNGNRTINRNVKGPVREGDILTLLEAER 60
Query: 60 EARRLR 65
EARRLR
Sbjct: 61 EARRLR 66
>sp|P46302|RS28_MAIZE 40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1
Length = 65
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 57/65 (87%)
Query: 1 MDKQVVLARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESERE 60
MD QV LA V+K +GRTGS+GQ TQV+V+F+ DQNR I+RNVKGPV EGDILTLLESERE
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60
Query: 61 ARRLR 65
ARRLR
Sbjct: 61 ARRLR 65
>sp|P33286|RS28_KLUMA 40S ribosomal protein S28 OS=Kluyveromyces marxianus GN=RPS28
PE=3 SV=1
Length = 67
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/67 (73%), Positives = 56/67 (83%), Gaps = 2/67 (2%)
Query: 1 MDKQ--VVLARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESE 58
MD + V LA+VIK LGRTGS+G TQV+VEF+ D RTI+RNVKGPVREGDIL L+ESE
Sbjct: 1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLMESE 60
Query: 59 REARRLR 65
REARRLR
Sbjct: 61 REARRLR 67
>sp|P33285|RS28_KLULA 40S ribosomal protein S28 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=RPS28 PE=3 SV=1
Length = 67
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/61 (77%), Positives = 53/61 (86%)
Query: 5 VVLARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESEREARRL 64
V LA+VIK LGRTGS+G TQV+VEF+ D RTI+RNVKGPVREGDIL L+ESEREARRL
Sbjct: 7 VTLAKVIKVLGRTGSRGGVTQVRVEFLEDTTRTIVRNVKGPVREGDILVLMESEREARRL 66
Query: 65 R 65
R
Sbjct: 67 R 67
>sp|Q6FLC3|RS28_CANGA 40S ribosomal protein S28 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPS28A
PE=3 SV=1
Length = 67
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/67 (73%), Positives = 56/67 (83%), Gaps = 2/67 (2%)
Query: 1 MDKQ--VVLARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESE 58
MD + V LARVIK LGRTGS+G TQV+VEF+ D +RTI+RNVKGPVRE DIL L+ESE
Sbjct: 1 MDNKTPVTLARVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLMESE 60
Query: 59 REARRLR 65
REARRLR
Sbjct: 61 REARRLR 67
>sp|Q74ZD8|RS28_ASHGO 40S ribosomal protein S28 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPS28A PE=3
SV=1
Length = 67
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 56/67 (83%), Gaps = 2/67 (2%)
Query: 1 MDKQ--VVLARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESE 58
MD + V LA+VIK LGRTGS+G TQV+VEF+ D +RTI+RNVKGPVRE DIL L+ESE
Sbjct: 1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLDDTSRTIVRNVKGPVRENDILVLMESE 60
Query: 59 REARRLR 65
REARRLR
Sbjct: 61 REARRLR 67
>sp|P0C0X0|RS28B_YEAST 40S ribosomal protein S28-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS28B PE=1 SV=1
Length = 67
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 56/67 (83%), Gaps = 2/67 (2%)
Query: 1 MDKQ--VVLARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESE 58
MD + V LA+VIK LGRTGS+G TQV+VEF+ D +RTI+RNVKGPVRE DIL L+ESE
Sbjct: 1 MDSKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLMESE 60
Query: 59 REARRLR 65
REARRLR
Sbjct: 61 REARRLR 67
>sp|Q3E7X9|RS28A_YEAST 40S ribosomal protein S28-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS28A PE=1 SV=1
Length = 67
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 56/67 (83%), Gaps = 2/67 (2%)
Query: 1 MDKQ--VVLARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESE 58
MD + V LA+VIK LGRTGS+G TQV+VEF+ D +RTI+RNVKGPVRE DIL L+ESE
Sbjct: 1 MDNKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLMESE 60
Query: 59 REARRLR 65
REARRLR
Sbjct: 61 REARRLR 67
>sp|Q10421|RS28_SCHPO 40S ribosomal protein S28 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps28a PE=3 SV=1
Length = 68
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/61 (77%), Positives = 53/61 (86%)
Query: 5 VVLARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESEREARRL 64
V LA+VIK LGRTGS+G TQV+VEF+ D +R+IIRNVKGPVRE DIL LLESEREARRL
Sbjct: 8 VKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDILVLLESEREARRL 67
Query: 65 R 65
R
Sbjct: 68 R 68
>sp|Q9SR73|RS281_ARATH 40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A
PE=3 SV=1
Length = 64
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 55/65 (84%), Gaps = 1/65 (1%)
Query: 1 MDKQVVLARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESERE 60
MD Q+ A V+K +GRTGS+GQ TQV+V+F D +R I+RNVKGPVREGDILTLLESERE
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILTLLESERE 59
Query: 61 ARRLR 65
ARRLR
Sbjct: 60 ARRLR 64
>sp|P34789|RS282_ARATH 40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C
PE=3 SV=1
Length = 64
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 55/65 (84%), Gaps = 1/65 (1%)
Query: 1 MDKQVVLARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESERE 60
MD Q+ A V+K +GRTGS+GQ TQV+V+F D +R I+RNVKGPVREGD+LTLLESERE
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRFIMRNVKGPVREGDVLTLLESERE 59
Query: 61 ARRLR 65
ARRLR
Sbjct: 60 ARRLR 64
>sp|Q7S6W5|RS28_NEUCR 40S ribosomal protein S28 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rps-28 PE=3 SV=1
Length = 68
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 51/61 (83%)
Query: 5 VVLARVIKTLGRTGSQGQCTQVKVEFIGDQNRTIIRNVKGPVREGDILTLLESEREARRL 64
V L +V + LGRTGS+G TQV+VEF+ DQ R+IIRNVKGPVRE DIL LLESEREARRL
Sbjct: 8 VKLVKVTRVLGRTGSRGGVTQVRVEFMDDQTRSIIRNVKGPVREDDILVLLESEREARRL 67
Query: 65 R 65
R
Sbjct: 68 R 68
>sp|Q54MZ5|RS28_DICDI 40S ribosomal protein S28 OS=Dictyostelium discoideum GN=rps28
PE=3 SV=1
Length = 72
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 51/64 (79%), Gaps = 3/64 (4%)
Query: 5 VVLARVIKTLGRTGSQGQCTQVKVEFIGD---QNRTIIRNVKGPVREGDILTLLESEREA 61
V LA+V + L RTGS+G TQV+VEF+G + RT++RNVKGPVR+ DIL LLE+EREA
Sbjct: 9 VQLAKVTEVLCRTGSRGAVTQVRVEFLGTAQGKERTLLRNVKGPVRKDDILCLLETEREA 68
Query: 62 RRLR 65
RRLR
Sbjct: 69 RRLR 72
>sp|Q8TVE7|RS28_METKA 30S ribosomal protein S28e OS=Methanopyrus kandleri (strain AV19
/ DSM 6324 / JCM 9639 / NBRC 100938) GN=rps28e PE=3
SV=1
Length = 74
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 8 ARVIKTLGRTGSQGQCTQVKVEFI--GDQNRTIIRNVKGPVREGDILTLLESEREARRL 64
A V++ LGRTG G+ TQVKV + D+ R I RNVKGPVREGDIL L E+EREAR +
Sbjct: 15 AEVVEILGRTGMAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDILLLRETEREARPI 73
>sp|A1RS33|RS28_PYRIL 30S ribosomal protein S28e OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rps28e PE=3 SV=1
Length = 77
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 6 VLARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESEREARR 63
V A VI+ LGRTG G+ TQVKV+ + D+ R + RN+KGPVR GDI+ L E+EREARR
Sbjct: 14 VAALVIQILGRTGVAGEVTQVKVKILEGRDKGRILTRNIKGPVRLGDIVMLRETEREARR 73
Query: 64 L 64
+
Sbjct: 74 I 74
>sp|P57711|RS28_THEAC 30S ribosomal protein S28e OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rps28e PE=3 SV=1
Length = 69
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 1 MDKQVVLARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESE 58
M + A V++ +GRTG G+ T VKV + DQ R I RNV GPVR GDIL L+E+
Sbjct: 1 MPNEATPAEVVEIIGRTGMTGEATTVKVRVLAGRDQGRIIARNVLGPVRVGDILMLMETA 60
Query: 59 REARRL 64
REA++L
Sbjct: 61 REAKKL 66
>sp|Q97BK7|RS28_THEVO 30S ribosomal protein S28e OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=rps28e PE=3 SV=1
Length = 69
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 1 MDKQVVLARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESE 58
M + A V++ +GRTG G+ T VKV + DQ R I RNV GPVR GDIL L+E+
Sbjct: 1 MPNEATPAEVVEIIGRTGMTGEATTVKVRILSGRDQGRIIARNVLGPVRVGDILMLMETA 60
Query: 59 REARRL 64
REA++L
Sbjct: 61 REAKKL 66
>sp|A4WLP1|RS28_PYRAR 30S ribosomal protein S28e OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=rps28e PE=3 SV=1
Length = 77
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 43/57 (75%), Gaps = 2/57 (3%)
Query: 10 VIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESEREARRL 64
VI+ LGRTG G+ TQVKV+ + D+ R + RN+KGPVR GDI+ L E+EREARR+
Sbjct: 18 VIQILGRTGIAGEVTQVKVKILEGRDKGRVLTRNIKGPVRLGDIVMLRETEREARRI 74
>sp|B1Y9V2|RS28_PYRNV 30S ribosomal protein S28e OS=Pyrobaculum neutrophilum (strain
DSM 2338 / JCM 9278 / V24Sta) GN=rps28e PE=3 SV=1
Length = 77
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 43/57 (75%), Gaps = 2/57 (3%)
Query: 10 VIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESEREARRL 64
V++ LGRTG G+ TQVK++ + D+ R + RNVKGPVR GDI+ L E+EREARR+
Sbjct: 18 VVQILGRTGVAGEVTQVKIKVLEGRDKGRVLTRNVKGPVRLGDIVMLRETEREARRI 74
>sp|Q8ZTA7|RS28_PYRAE 30S ribosomal protein S28e OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rps28e PE=3 SV=1
Length = 77
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 43/57 (75%), Gaps = 2/57 (3%)
Query: 10 VIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESEREARRL 64
V++ LGRTG G+ TQVK++ + D+ R + RNVKGPVR GDI+ L E+EREARR+
Sbjct: 18 VVQILGRTGIAGEVTQVKIKILEGRDKGRVLTRNVKGPVRLGDIVMLRETEREARRI 74
>sp|P54065|RS28_METJA 30S ribosomal protein S28e OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=rps28e PE=3 SV=2
Length = 75
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 3 KQVVLARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESERE 60
K+ V A VI+ +GRTG G QV+ + +G D R ++RNVKGPV+ GDI+ L E+ERE
Sbjct: 8 KEAVAAEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVKVGDIIMLRETERE 67
Query: 61 ARRL 64
AR L
Sbjct: 68 ARPL 71
>sp|P61030|RS28_PYRHO 30S ribosomal protein S28e OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps28e PE=1 SV=1
Length = 71
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 8 ARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESEREARRLR 65
A VI+ +GRTG+ G TQVKV + D+ R I RNV+GPVR GDIL L E+EREAR ++
Sbjct: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIK 68
>sp|P61029|RS28_PYRAB 30S ribosomal protein S28e OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rps28e PE=3 SV=1
Length = 71
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 8 ARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESEREARRLR 65
A VI+ +GRTG+ G TQVKV + D+ R I RNV+GPVR GDIL L E+EREAR ++
Sbjct: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIK 68
>sp|P61031|RS28_NANEQ 30S ribosomal protein S28e OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rps28e PE=3 SV=1
Length = 88
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 8 ARVIKTLGRTGSQGQCTQVKVEFI--GDQNRTIIRNVKGPVREGDILTLLESEREARRL 64
ARV++ +GRTG+ G+ TQV VE + D R I RNVKGPVR GDIL L E+E EAR L
Sbjct: 26 ARVVEIVGRTGTTGEVTQVIVEILEGKDAGRLIRRNVKGPVRVGDILMLRETEIEARPL 84
>sp|Q8U159|RS28_PYRFU 30S ribosomal protein S28e OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rps28e PE=1 SV=1
Length = 71
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 8 ARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESEREARRLR 65
A VI+ +GRTG+ G TQVKV + D+ R I RNV+GPVR GDIL L E+EREAR ++
Sbjct: 9 AEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRIGDILILRETEREAREIK 68
>sp|Q4JAV1|RS28_SULAC 30S ribosomal protein S28e OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=rps28e PE=3 SV=1
Length = 84
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 8 ARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESEREARRL 64
A VI+ L RTG G+ TQV+V + D+ R + RNVKGPVR GDIL L E+EREAR+L
Sbjct: 22 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRLGDILILRETEREARKL 80
>sp|Q975Z8|RS28_SULTO 30S ribosomal protein S28e OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=rps28e PE=3
SV=1
Length = 83
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 8 ARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESEREARRL 64
A VI+ L RTG G+ TQV+V + D+ R + RNVKGPVR GDIL L E+EREAR+L
Sbjct: 21 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRLGDILILRETEREARKL 79
>sp|Q6KZI6|RS28_PICTO 30S ribosomal protein S28e OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=rps28e
PE=3 SV=1
Length = 69
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 1 MDKQVVLARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESE 58
M+ A V++ +GRTG G+ T VKV + DQ R I RNV GPV+ GD+L L E+
Sbjct: 1 MEDDATPAEVVEIMGRTGMTGEATTVKVRVLSGKDQGRIIARNVLGPVKVGDVLMLRETA 60
Query: 59 REARRL 64
REAR+L
Sbjct: 61 REARKL 66
>sp|Q980Q5|RS28_SULSO 30S ribosomal protein S28e OS=Sulfolobus solfataricus (strain
ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rps28e PE=3
SV=2
Length = 83
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 8 ARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESEREARRL 64
A VI+ L RTG G+ TQV+V + D+ R + RNVKGPVR GDIL L E+EREAR++
Sbjct: 21 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGDILILRETEREARKI 79
>sp|A1RXH2|RS28_THEPD 30S ribosomal protein S28e OS=Thermofilum pendens (strain Hrk 5)
GN=rps28e PE=3 SV=1
Length = 77
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 6 VLARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESEREARR 63
V A V++ +GRTG G+ TQV+V + D+ R + RNV+GPVR GDI+ L E+EREAR+
Sbjct: 14 VPAEVVQIIGRTGITGEVTQVRVRVLEGRDKGRILTRNVRGPVRVGDIVMLRETEREARK 73
Query: 64 L 64
+
Sbjct: 74 I 74
>sp|Q9Y9A6|RS28_AERPE 30S ribosomal protein S28e OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rps28e PE=3 SV=3
Length = 82
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 8 ARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESEREARRL 64
A VI+ +GRTG G+ TQV+V + D+ R + RNV GPVR GDIL L E+EREAR+L
Sbjct: 20 AEVIQIIGRTGVTGEVTQVRVRILEGRDKGRILTRNVIGPVRIGDILILRETEREARKL 78
>sp|O29493|RS28_ARCFU 30S ribosomal protein S28e OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rps28e PE=3 SV=1
Length = 71
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 8 ARVIKTLGRTGSQGQCTQVKVEFIGDQN--RTIIRNVKGPVREGDILTLLESEREARRL 64
A V++ +GRTG G+ TQVKV + +N R I RNV GPV+ GDI+ + E+ REAR+L
Sbjct: 10 AEVVELVGRTGMHGEVTQVKVRVLAGENKGRVITRNVFGPVKVGDIIMIKETAREARKL 68
>sp|A4YCQ2|RS28_METS5 30S ribosomal protein S28e OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=rps28e PE=3 SV=1
Length = 80
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 8 ARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESEREARRL 64
A VI+ L RTG G+ TQV+V + D+ R + RN+KGPVR GDI+ L E+EREAR+L
Sbjct: 18 AEVIQLLDRTGVTGEVTQVRVRVLEGRDKGRILTRNIKGPVRLGDIVILRETEREARKL 76
>sp|B1L5N5|RS28_KORCO 30S ribosomal protein S28e OS=Korarchaeum cryptofilum (strain
OPF8) GN=rps28e PE=3 SV=1
Length = 71
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 8 ARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESEREARRLR 65
A V++ +GRTG G+ QV+ + + D+ R + RNVKGPVR GDIL L E+E EAR+L+
Sbjct: 10 AEVVEIIGRTGVAGEVIQVRAKILAGRDKGRVLTRNVKGPVRVGDILILRETEIEARKLK 69
>sp|A6USH4|RS28_METVS 30S ribosomal protein S28e OS=Methanococcus vannielii (strain SB
/ ATCC 35089 / DSM 1224) GN=rps28e PE=3 SV=1
Length = 76
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 3 KQVVLARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESERE 60
++ V A VI+ GRTG G+ QV+ + +G D R + RNVKGPV+ GD++ L E+ERE
Sbjct: 8 QEAVAAEVIQVSGRTGVTGEIFQVRCKILGGKDTGRILTRNVKGPVKVGDLIMLRETERE 67
Query: 61 ARRL 64
A++L
Sbjct: 68 AKQL 71
>sp|A6UT50|RS28_META3 30S ribosomal protein S28e OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rps28e PE=3 SV=1
Length = 75
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 3 KQVVLARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESERE 60
K+ + A V++ GRTG G+ QV+ + +G D R + RN+KGP++ GDI+ L E+ERE
Sbjct: 8 KEAIAAEVLQVTGRTGVTGEIFQVRCKILGGKDTGRILTRNIKGPIKVGDIIMLRETERE 67
Query: 61 ARRL 64
A+ L
Sbjct: 68 AKAL 71
>sp|O26356|RS28_METTH 30S ribosomal protein S28e OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rps28e PE=1 SV=1
Length = 68
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 ARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESEREARRLR 65
A VI+ L RTG G+ QVK + D+ R + RNV GP+REGDIL LL++ REA+ +R
Sbjct: 7 AEVIEVLKRTGMTGEVMQVKCRILDGRDKGRILTRNVMGPIREGDILMLLDTIREAKEIR 66
>sp|Q6LZI8|RS28_METMP 30S ribosomal protein S28e OS=Methanococcus maripaludis (strain
S2 / LL) GN=rps28e PE=3 SV=1
Length = 76
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 3 KQVVLARVIKTLGRTGSQGQCTQVKVEFIG--DQNRTIIRNVKGPVREGDILTLLESERE 60
++ V A VI+ GRTG G+ QV+ + +G D R + RNVKGPV+ GD++ L E+ERE
Sbjct: 8 QEAVAAEVIQVNGRTGVTGEIFQVRCKILGGKDTGRILTRNVKGPVKLGDLIMLRETERE 67
Query: 61 ARRL 64
A++L
Sbjct: 68 AKQL 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,866,854
Number of Sequences: 539616
Number of extensions: 565809
Number of successful extensions: 1696
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1593
Number of HSP's gapped (non-prelim): 63
length of query: 65
length of database: 191,569,459
effective HSP length: 37
effective length of query: 28
effective length of database: 171,603,667
effective search space: 4804902676
effective search space used: 4804902676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)