Query psy5288
Match_columns 186
No_of_seqs 125 out of 1182
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 22:43:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14938 SNAP: Soluble NSF att 100.0 2.2E-32 4.8E-37 216.7 20.1 179 6-186 1-181 (282)
2 KOG1586|consensus 100.0 9.6E-31 2.1E-35 195.6 18.4 178 6-186 2-180 (288)
3 PF14938 SNAP: Soluble NSF att 99.8 1.8E-18 4E-23 137.1 22.0 169 4-185 30-221 (282)
4 KOG1585|consensus 99.8 1.7E-18 3.7E-23 130.9 19.7 174 1-185 1-175 (308)
5 KOG1840|consensus 99.6 2.2E-13 4.7E-18 114.9 21.5 171 6-186 216-393 (508)
6 KOG1586|consensus 99.6 2.5E-13 5.3E-18 102.5 17.8 180 3-184 28-222 (288)
7 KOG4626|consensus 99.6 5.7E-14 1.2E-18 118.3 13.4 135 32-185 298-447 (966)
8 KOG1840|consensus 99.5 1.5E-12 3.2E-17 109.9 20.5 172 4-185 256-434 (508)
9 KOG1130|consensus 99.5 5.9E-14 1.3E-18 113.5 11.2 138 47-185 102-260 (639)
10 KOG4626|consensus 99.5 9.2E-14 2E-18 117.0 12.7 135 32-185 332-481 (966)
11 KOG1585|consensus 99.5 4E-12 8.6E-17 96.6 17.7 150 35-185 66-215 (308)
12 KOG1130|consensus 99.4 2.9E-12 6.3E-17 103.8 12.2 137 47-184 202-339 (639)
13 TIGR00990 3a0801s09 mitochondr 99.4 3.9E-11 8.4E-16 104.7 17.3 135 32-185 343-492 (615)
14 TIGR03302 OM_YfiO outer membra 99.4 1E-10 2.2E-15 90.0 17.6 165 3-186 28-229 (235)
15 TIGR02521 type_IV_pilW type IV 99.4 1.7E-10 3.7E-15 86.8 17.7 135 34-185 45-194 (234)
16 KOG1155|consensus 99.3 2E-11 4.2E-16 100.0 12.8 134 33-185 343-491 (559)
17 TIGR00990 3a0801s09 mitochondr 99.3 6.8E-11 1.5E-15 103.2 16.0 141 32-185 411-567 (615)
18 KOG1126|consensus 99.3 8.1E-12 1.8E-16 105.7 6.6 127 47-186 428-583 (638)
19 COG3063 PilF Tfp pilus assembl 99.3 3E-10 6.4E-15 85.8 13.6 135 34-185 29-164 (250)
20 KOG2003|consensus 99.2 2.6E-10 5.6E-15 93.7 13.0 143 31-186 501-686 (840)
21 KOG1173|consensus 99.2 3.4E-10 7.3E-15 94.7 13.7 139 34-185 360-514 (611)
22 PF13424 TPR_12: Tetratricopep 99.2 1.7E-10 3.6E-15 73.8 9.5 73 78-151 3-77 (78)
23 TIGR02521 type_IV_pilW type IV 99.2 6.8E-10 1.5E-14 83.5 13.8 135 34-185 25-160 (234)
24 PRK09782 bacteriophage N4 rece 99.2 5.8E-10 1.3E-14 101.4 15.4 135 32-186 554-703 (987)
25 KOG1155|consensus 99.2 1.1E-09 2.3E-14 90.0 15.3 165 5-185 346-532 (559)
26 PRK11788 tetratricopeptide rep 99.2 1E-09 2.2E-14 90.2 15.5 58 121-184 216-273 (389)
27 PF13424 TPR_12: Tetratricopep 99.2 7.5E-10 1.6E-14 70.8 10.7 75 37-111 2-78 (78)
28 PRK11788 tetratricopeptide rep 99.2 2.7E-09 5.9E-14 87.7 16.2 57 121-185 251-307 (389)
29 KOG1126|consensus 99.1 1.7E-10 3.8E-15 97.7 8.6 119 47-184 496-615 (638)
30 TIGR02917 PEP_TPR_lipo putativ 99.1 3.8E-09 8.2E-14 94.0 16.5 124 7-149 21-188 (899)
31 PRK12370 invasion protein regu 99.1 6.7E-09 1.4E-13 89.8 15.8 136 33-186 317-467 (553)
32 PRK11447 cellulose synthase su 99.1 8E-09 1.7E-13 96.1 17.1 148 32-186 281-521 (1157)
33 PRK15359 type III secretion sy 99.1 1.8E-09 3.9E-14 77.4 10.0 111 43-172 27-138 (144)
34 PRK11189 lipoprotein NlpI; Pro 99.1 2.4E-08 5.3E-13 79.8 17.6 140 33-186 77-262 (296)
35 TIGR03302 OM_YfiO outer membra 99.1 1E-08 2.3E-13 78.8 14.9 146 34-185 27-191 (235)
36 TIGR02917 PEP_TPR_lipo putativ 99.1 5.1E-09 1.1E-13 93.1 15.0 141 32-186 715-897 (899)
37 PRK11189 lipoprotein NlpI; Pro 99.1 9.9E-09 2.2E-13 82.0 14.9 129 37-185 61-190 (296)
38 PF13429 TPR_15: Tetratricopep 99.1 1.4E-08 3.1E-13 80.3 15.6 124 44-186 150-274 (280)
39 PRK15174 Vi polysaccharide exp 99.0 3.7E-09 8E-14 93.0 13.2 134 32-184 189-342 (656)
40 PRK15174 Vi polysaccharide exp 99.0 8.4E-09 1.8E-13 90.8 14.0 135 32-185 224-377 (656)
41 PRK15359 type III secretion sy 99.0 1E-08 2.3E-13 73.4 11.9 103 61-185 14-117 (144)
42 COG2956 Predicted N-acetylgluc 99.0 2.4E-08 5.2E-13 79.0 14.1 148 31-186 46-240 (389)
43 PRK11447 cellulose synthase su 99.0 3.3E-08 7.1E-13 92.1 17.2 141 32-185 585-736 (1157)
44 COG3063 PilF Tfp pilus assembl 99.0 1.9E-08 4.1E-13 76.2 12.6 137 32-185 47-198 (250)
45 KOG2003|consensus 99.0 9.3E-09 2E-13 84.7 11.4 116 49-183 499-615 (840)
46 PF09976 TPR_21: Tetratricopep 99.0 2.7E-07 5.8E-12 66.1 17.9 136 35-185 7-143 (145)
47 CHL00033 ycf3 photosystem I as 98.9 2.9E-08 6.3E-13 72.7 12.7 116 33-152 28-145 (168)
48 PRK12370 invasion protein regu 98.9 2.6E-08 5.5E-13 86.2 14.2 112 55-185 319-431 (553)
49 PRK10370 formate-dependent nit 98.9 2.1E-08 4.5E-13 75.7 11.1 114 53-185 52-169 (198)
50 PRK09782 bacteriophage N4 rece 98.9 3.1E-08 6.6E-13 90.3 14.0 133 34-185 590-736 (987)
51 PRK15179 Vi polysaccharide bio 98.9 5.8E-08 1.3E-12 85.6 15.3 160 5-185 45-213 (694)
52 CHL00033 ycf3 photosystem I as 98.9 6.2E-08 1.4E-12 71.0 12.8 107 75-185 30-138 (168)
53 PRK10370 formate-dependent nit 98.9 1.9E-07 4.2E-12 70.4 14.5 115 42-170 75-193 (198)
54 PRK04841 transcriptional regul 98.8 1.5E-06 3.3E-11 79.0 22.3 140 44-185 495-637 (903)
55 KOG0553|consensus 98.8 9.7E-08 2.1E-12 74.8 10.7 104 38-154 79-183 (304)
56 KOG1173|consensus 98.8 9.4E-08 2E-12 80.3 11.1 139 33-185 325-480 (611)
57 cd05804 StaR_like StaR_like; a 98.8 2.4E-07 5.3E-12 75.2 13.5 96 81-185 115-211 (355)
58 TIGR02552 LcrH_SycD type III s 98.8 1E-07 2.2E-12 66.9 9.8 101 40-153 17-118 (135)
59 PRK15363 pathogenicity island 98.8 1.5E-07 3.2E-12 67.8 10.6 101 37-150 32-133 (157)
60 PRK02603 photosystem I assembl 98.8 2.9E-07 6.3E-12 67.7 12.3 88 78-175 33-121 (172)
61 PF12895 Apc3: Anaphase-promot 98.8 1.4E-07 3.1E-12 61.1 9.4 80 94-185 4-83 (84)
62 KOG1941|consensus 98.7 1.2E-06 2.7E-11 70.6 16.3 175 6-181 139-352 (518)
63 PF13414 TPR_11: TPR repeat; P 98.7 4.4E-08 9.5E-13 60.9 6.5 60 119-185 3-63 (69)
64 KOG2002|consensus 98.7 2.4E-07 5.1E-12 82.0 13.0 169 5-185 252-477 (1018)
65 KOG1941|consensus 98.7 9.8E-07 2.1E-11 71.1 15.4 143 34-178 136-304 (518)
66 PRK10049 pgaA outer membrane p 98.7 6.6E-07 1.4E-11 80.2 16.2 133 33-185 28-175 (765)
67 PF13429 TPR_15: Tetratricopep 98.7 1.4E-07 3.1E-12 74.5 10.5 122 47-185 117-239 (280)
68 PRK02603 photosystem I assembl 98.7 4.7E-07 1E-11 66.6 12.5 107 37-152 32-145 (172)
69 PF13525 YfiO: Outer membrane 98.7 6.3E-06 1.4E-10 62.4 18.8 158 4-180 1-198 (203)
70 KOG0553|consensus 98.7 1.1E-06 2.4E-11 69.0 13.7 80 94-186 96-175 (304)
71 cd00189 TPR Tetratricopeptide 98.7 1.6E-07 3.5E-12 59.8 7.7 89 84-185 4-93 (100)
72 PRK10866 outer membrane biogen 98.7 9.3E-06 2E-10 63.2 18.7 159 7-184 31-236 (243)
73 COG2956 Predicted N-acetylgluc 98.7 5E-06 1.1E-10 66.1 17.1 135 38-185 139-274 (389)
74 PRK04841 transcriptional regul 98.7 9.2E-06 2E-10 73.9 21.5 139 45-185 457-598 (903)
75 PRK10049 pgaA outer membrane p 98.7 1.3E-06 2.9E-11 78.3 15.7 142 32-186 284-453 (765)
76 KOG1125|consensus 98.7 2.4E-07 5.1E-12 78.1 10.1 123 47-182 437-564 (579)
77 TIGR02795 tol_pal_ybgF tol-pal 98.7 8.7E-07 1.9E-11 60.3 11.5 106 41-153 3-109 (119)
78 TIGR02795 tol_pal_ybgF tol-pal 98.6 1.2E-06 2.6E-11 59.6 12.1 68 82-153 4-72 (119)
79 TIGR02552 LcrH_SycD type III s 98.6 9.2E-07 2E-11 62.0 11.8 91 81-185 18-110 (135)
80 KOG1129|consensus 98.6 2.4E-07 5.1E-12 73.8 9.5 128 47-184 297-453 (478)
81 KOG2002|consensus 98.6 3.2E-06 6.8E-11 75.1 17.2 153 32-186 319-522 (1018)
82 KOG0547|consensus 98.6 2.1E-07 4.6E-12 77.2 9.4 98 81-185 463-562 (606)
83 PLN03088 SGT1, suppressor of 98.6 2.1E-07 4.6E-12 76.3 9.4 98 43-153 5-103 (356)
84 PLN03088 SGT1, suppressor of 98.6 7.2E-07 1.6E-11 73.2 12.5 88 85-185 8-95 (356)
85 KOG1125|consensus 98.6 3E-07 6.5E-12 77.5 9.5 86 87-185 437-523 (579)
86 KOG2076|consensus 98.6 9.6E-07 2.1E-11 77.7 12.0 127 43-186 382-509 (895)
87 PRK15363 pathogenicity island 98.6 3.1E-06 6.8E-11 61.0 12.5 71 88-165 44-115 (157)
88 KOG1129|consensus 98.6 1.4E-07 3E-12 75.1 5.7 135 40-184 256-419 (478)
89 PRK10803 tol-pal system protei 98.5 1.9E-06 4.1E-11 67.8 11.9 100 80-186 143-243 (263)
90 cd00189 TPR Tetratricopeptide 98.5 1.1E-06 2.4E-11 55.9 8.7 97 42-151 2-99 (100)
91 PF13414 TPR_11: TPR repeat; P 98.5 2.2E-07 4.8E-12 57.7 5.0 64 80-150 3-68 (69)
92 KOG0543|consensus 98.5 3E-06 6.5E-11 69.0 12.0 109 38-153 206-324 (397)
93 PF12895 Apc3: Anaphase-promot 98.5 1.6E-06 3.5E-11 56.1 8.6 82 53-146 2-84 (84)
94 PRK10803 tol-pal system protei 98.5 5.1E-06 1.1E-10 65.4 12.7 109 39-154 142-251 (263)
95 PF09976 TPR_21: Tetratricopep 98.5 1.9E-05 4.2E-10 56.4 14.4 99 38-147 46-145 (145)
96 PRK14574 hmsH outer membrane p 98.4 4.5E-06 9.9E-11 75.1 13.4 126 41-186 36-162 (822)
97 KOG0547|consensus 98.4 6.2E-06 1.3E-10 68.7 12.7 124 43-185 363-487 (606)
98 KOG2076|consensus 98.4 9E-06 2E-10 71.7 13.5 135 32-186 131-267 (895)
99 PLN02789 farnesyltranstransfer 98.4 1.4E-05 3E-10 64.7 13.5 132 32-185 32-167 (320)
100 PF12688 TPR_5: Tetratrico pep 98.4 2.5E-05 5.4E-10 54.2 12.6 93 84-183 5-98 (120)
101 PF13432 TPR_16: Tetratricopep 98.3 1.4E-06 3E-11 53.4 5.4 55 124-185 2-56 (65)
102 cd05804 StaR_like StaR_like; a 98.3 3.5E-05 7.7E-10 62.5 15.1 124 46-185 49-173 (355)
103 PRK15179 Vi polysaccharide bio 98.3 1.7E-05 3.7E-10 70.2 13.3 131 40-186 49-180 (694)
104 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.9E-05 8.5E-10 63.6 14.5 116 48-185 177-293 (395)
105 PF09986 DUF2225: Uncharacteri 98.3 1.9E-05 4.1E-10 60.3 11.5 92 94-186 92-191 (214)
106 PRK14574 hmsH outer membrane p 98.3 1.7E-05 3.6E-10 71.5 12.5 115 49-183 111-226 (822)
107 PF13525 YfiO: Outer membrane 98.3 0.00013 2.9E-09 55.1 15.6 139 42-186 7-167 (203)
108 KOG4234|consensus 98.3 1.8E-05 4E-10 59.2 10.4 132 5-153 69-201 (271)
109 KOG3060|consensus 98.2 5.5E-05 1.2E-09 58.4 13.1 121 47-185 93-216 (289)
110 KOG0548|consensus 98.2 4.3E-05 9.2E-10 64.3 13.4 131 42-185 300-451 (539)
111 PRK10747 putative protoheme IX 98.2 0.00024 5.3E-09 59.1 17.6 171 4-185 133-386 (398)
112 TIGR00540 hemY_coli hemY prote 98.2 5.6E-05 1.2E-09 63.1 13.6 129 39-185 262-395 (409)
113 PF14559 TPR_19: Tetratricopep 98.2 6.4E-06 1.4E-10 50.8 5.8 47 134-186 5-51 (68)
114 KOG0548|consensus 98.2 0.00013 2.7E-09 61.5 14.7 100 40-152 358-458 (539)
115 COG5010 TadD Flp pilus assembl 98.2 5.6E-05 1.2E-09 58.4 11.6 118 46-182 106-224 (257)
116 PRK14720 transcript cleavage f 98.1 5.3E-05 1.2E-09 68.3 13.1 130 40-185 31-174 (906)
117 PRK10866 outer membrane biogen 98.1 0.0003 6.5E-09 54.8 15.8 141 38-186 31-201 (243)
118 KOG3616|consensus 98.1 0.00015 3.2E-09 63.6 14.9 104 80-185 661-790 (1636)
119 PRK10153 DNA-binding transcrip 98.1 0.00014 3E-09 62.5 14.6 133 35-185 335-478 (517)
120 KOG0543|consensus 98.1 3.8E-05 8.3E-10 62.7 10.0 97 83-186 211-317 (397)
121 KOG3616|consensus 98.1 5.2E-05 1.1E-09 66.4 11.1 142 41-183 662-847 (1636)
122 COG5010 TadD Flp pilus assembl 98.1 8.7E-05 1.9E-09 57.4 11.1 79 94-185 115-193 (257)
123 PRK10747 putative protoheme IX 98.1 0.00018 3.8E-09 60.0 13.9 133 34-185 79-212 (398)
124 PF12862 Apc5: Anaphase-promot 98.0 0.00022 4.8E-09 47.2 11.5 83 87-170 6-91 (94)
125 PF13432 TPR_16: Tetratricopep 98.0 7.1E-06 1.5E-10 50.2 3.5 60 86-152 3-63 (65)
126 PRK15331 chaperone protein Sic 98.0 7E-05 1.5E-09 54.4 8.7 57 121-184 73-129 (165)
127 KOG4162|consensus 98.0 0.00028 6.2E-09 61.7 13.5 131 35-184 645-778 (799)
128 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 6.4E-05 1.4E-09 62.6 9.0 65 117-185 73-137 (453)
129 PF13371 TPR_9: Tetratricopept 97.9 3E-05 6.6E-10 48.4 5.5 54 126-186 2-55 (73)
130 KOG3617|consensus 97.9 0.00018 3.9E-09 63.7 11.8 147 26-183 917-1103(1416)
131 PLN02789 farnesyltranstransfer 97.9 0.001 2.3E-08 53.8 15.5 132 33-183 50-206 (320)
132 PLN03218 maturation of RBCL 1; 97.9 0.00062 1.3E-08 63.2 15.2 138 32-185 591-744 (1060)
133 PF12688 TPR_5: Tetratrico pep 97.9 0.00059 1.3E-08 47.3 11.5 99 43-148 4-103 (120)
134 PF13176 TPR_7: Tetratricopept 97.9 4.2E-05 9.1E-10 41.3 4.5 33 121-154 1-33 (36)
135 KOG3060|consensus 97.9 0.00044 9.5E-09 53.6 11.6 109 32-152 98-223 (289)
136 KOG1128|consensus 97.8 0.00012 2.6E-09 63.8 9.2 80 93-185 499-578 (777)
137 COG1729 Uncharacterized protei 97.8 0.00024 5.3E-09 55.4 9.4 98 82-186 144-241 (262)
138 KOG1127|consensus 97.8 0.00035 7.5E-09 62.9 10.9 119 55-186 473-622 (1238)
139 TIGR00540 hemY_coli hemY prote 97.8 0.00066 1.4E-08 56.7 12.3 132 35-185 80-212 (409)
140 PLN03218 maturation of RBCL 1; 97.7 0.0016 3.6E-08 60.5 15.6 59 121-185 651-709 (1060)
141 KOG4555|consensus 97.7 0.0038 8.3E-08 43.9 13.7 125 38-172 41-173 (175)
142 PLN03081 pentatricopeptide (PP 97.7 0.00055 1.2E-08 61.0 12.1 139 32-185 372-553 (697)
143 PF00515 TPR_1: Tetratricopept 97.7 9.4E-05 2E-09 39.1 4.5 33 119-152 1-33 (34)
144 PF09986 DUF2225: Uncharacteri 97.7 0.0011 2.5E-08 50.5 12.1 98 52-150 89-195 (214)
145 KOG0550|consensus 97.7 0.0002 4.4E-09 58.8 8.2 126 48-185 211-346 (486)
146 PF07719 TPR_2: Tetratricopept 97.7 0.00011 2.4E-09 38.6 4.6 33 119-152 1-33 (34)
147 PRK14720 transcript cleavage f 97.7 0.0012 2.5E-08 60.0 13.5 115 45-172 121-269 (906)
148 KOG2376|consensus 97.7 0.0059 1.3E-07 52.4 16.7 67 118-185 174-249 (652)
149 KOG1156|consensus 97.7 0.00073 1.6E-08 58.3 11.2 118 48-184 49-167 (700)
150 KOG0550|consensus 97.7 0.00057 1.2E-08 56.3 10.0 112 32-152 215-353 (486)
151 KOG4555|consensus 97.7 0.0019 4.2E-08 45.4 11.2 83 94-185 58-140 (175)
152 PLN03081 pentatricopeptide (PP 97.6 0.001 2.2E-08 59.3 11.9 142 32-185 271-451 (697)
153 KOG4234|consensus 97.6 0.0004 8.6E-09 52.2 7.7 89 90-186 106-194 (271)
154 KOG1174|consensus 97.6 0.0051 1.1E-07 51.0 14.7 135 31-185 311-496 (564)
155 PLN03077 Protein ECB2; Provisi 97.6 0.0072 1.6E-07 55.1 17.4 57 125-186 595-651 (857)
156 KOG1128|consensus 97.6 0.00029 6.3E-09 61.4 7.5 132 36-186 473-613 (777)
157 PF13181 TPR_8: Tetratricopept 97.6 0.00027 5.9E-09 37.2 4.9 32 119-151 1-32 (34)
158 COG4235 Cytochrome c biogenesi 97.6 0.002 4.3E-08 51.0 11.5 128 4-158 134-265 (287)
159 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00074 1.6E-08 56.4 9.4 67 37-108 72-141 (453)
160 PF12862 Apc5: Anaphase-promot 97.5 0.0029 6.2E-08 41.8 10.6 79 52-130 10-92 (94)
161 PF11817 Foie-gras_1: Foie gra 97.5 0.0022 4.8E-08 50.0 11.7 87 96-183 155-241 (247)
162 COG0457 NrfG FOG: TPR repeat [ 97.5 0.01 2.3E-07 42.8 14.8 120 49-185 139-261 (291)
163 PF04190 DUF410: Protein of un 97.5 0.032 7E-07 43.9 18.5 150 33-184 3-165 (260)
164 PF13431 TPR_17: Tetratricopep 97.5 0.00013 2.8E-09 38.9 2.8 34 142-181 1-34 (34)
165 KOG4340|consensus 97.5 0.0019 4.1E-08 51.5 10.1 127 47-185 51-203 (459)
166 PF10602 RPN7: 26S proteasome 97.4 0.026 5.7E-07 41.7 16.8 121 61-185 17-138 (177)
167 PF13176 TPR_7: Tetratricopept 97.4 0.00065 1.4E-08 36.5 5.2 32 43-74 2-33 (36)
168 KOG4642|consensus 97.4 0.0024 5.1E-08 49.2 9.9 108 33-153 3-111 (284)
169 PF03704 BTAD: Bacterial trans 97.4 0.013 2.9E-07 41.5 13.5 58 121-185 64-121 (146)
170 PF13371 TPR_9: Tetratricopept 97.4 0.0007 1.5E-08 42.1 6.0 58 88-152 3-61 (73)
171 KOG3617|consensus 97.3 0.0094 2E-07 53.3 14.0 88 93-185 872-992 (1416)
172 PF12968 DUF3856: Domain of Un 97.3 0.017 3.6E-07 39.9 12.3 104 80-185 7-125 (144)
173 COG4783 Putative Zn-dependent 97.3 0.0056 1.2E-07 51.4 12.1 112 53-183 319-431 (484)
174 PF12569 NARP1: NMDA receptor- 97.3 0.0074 1.6E-07 52.0 13.3 128 42-186 196-331 (517)
175 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.0057 1.2E-07 50.9 12.1 100 32-144 181-292 (395)
176 KOG1174|consensus 97.3 0.0055 1.2E-07 50.8 11.4 81 89-182 310-390 (564)
177 PF14559 TPR_19: Tetratricopep 97.3 0.00047 1E-08 42.2 4.1 53 93-152 5-57 (68)
178 COG4105 ComL DNA uptake lipopr 97.3 0.059 1.3E-06 42.0 19.2 157 7-182 33-226 (254)
179 PRK15331 chaperone protein Sic 97.2 0.0096 2.1E-07 43.4 11.0 99 37-148 34-133 (165)
180 PLN03077 Protein ECB2; Provisi 97.2 0.016 3.4E-07 53.0 14.8 51 128-185 666-716 (857)
181 KOG3785|consensus 97.2 0.013 2.8E-07 47.8 12.5 154 12-183 20-208 (557)
182 COG4783 Putative Zn-dependent 97.2 0.0046 1E-07 51.9 10.2 98 75-185 302-399 (484)
183 PRK10153 DNA-binding transcrip 97.2 0.0088 1.9E-07 51.6 12.2 127 6-153 337-486 (517)
184 KOG0624|consensus 97.2 0.033 7.2E-07 45.3 14.5 136 33-184 51-213 (504)
185 KOG1127|consensus 97.2 0.0017 3.6E-08 58.7 7.7 126 47-185 499-655 (1238)
186 PF13428 TPR_14: Tetratricopep 97.2 0.0013 2.8E-08 37.0 4.7 42 120-168 2-43 (44)
187 KOG0495|consensus 97.1 0.012 2.7E-07 51.3 12.2 133 33-185 597-744 (913)
188 KOG0495|consensus 97.1 0.021 4.6E-07 50.0 13.4 57 121-184 819-875 (913)
189 PF11817 Foie-gras_1: Foie gra 97.1 0.028 6.1E-07 43.8 13.1 92 54-146 152-244 (247)
190 PF10602 RPN7: 26S proteasome 97.1 0.04 8.6E-07 40.8 13.3 111 37-151 33-144 (177)
191 COG1729 Uncharacterized protei 97.1 0.013 2.7E-07 45.9 10.8 107 40-154 142-249 (262)
192 PF13374 TPR_10: Tetratricopep 97.0 0.0021 4.6E-08 35.1 4.8 34 119-153 2-35 (42)
193 COG0457 NrfG FOG: TPR repeat [ 97.0 0.038 8.1E-07 39.8 12.9 88 89-185 139-227 (291)
194 PF13512 TPR_18: Tetratricopep 97.0 0.018 3.9E-07 41.0 10.3 89 80-175 11-99 (142)
195 PF10300 DUF3808: Protein of u 97.0 0.042 9.2E-07 46.9 14.4 108 37-152 264-379 (468)
196 PF10300 DUF3808: Protein of u 96.9 0.031 6.8E-07 47.7 13.0 102 76-186 264-373 (468)
197 PF00515 TPR_1: Tetratricopept 96.9 0.0038 8.2E-08 32.7 4.8 29 41-69 2-30 (34)
198 COG4235 Cytochrome c biogenesi 96.9 0.011 2.4E-07 46.8 9.0 94 80-185 156-252 (287)
199 KOG1156|consensus 96.9 0.0052 1.1E-07 53.2 7.7 125 38-182 6-131 (700)
200 PF10345 Cohesin_load: Cohesin 96.9 0.2 4.3E-06 44.2 17.9 145 37-184 57-203 (608)
201 PF10345 Cohesin_load: Cohesin 96.8 0.28 6E-06 43.3 18.7 127 56-185 37-164 (608)
202 KOG2300|consensus 96.8 0.16 3.5E-06 43.1 15.9 134 45-184 12-151 (629)
203 KOG0551|consensus 96.8 0.014 2.9E-07 47.1 9.2 110 34-152 75-185 (390)
204 KOG0624|consensus 96.8 0.094 2E-06 42.8 13.8 141 32-185 118-294 (504)
205 PF07719 TPR_2: Tetratricopept 96.7 0.0058 1.3E-07 31.8 4.8 29 41-69 2-30 (34)
206 PF04733 Coatomer_E: Coatomer 96.7 0.048 1E-06 43.6 11.7 79 94-185 182-261 (290)
207 KOG4162|consensus 96.7 0.057 1.2E-06 47.9 12.8 131 41-184 395-537 (799)
208 KOG4648|consensus 96.7 0.013 2.9E-07 47.6 8.2 94 46-152 103-197 (536)
209 COG2976 Uncharacterized protei 96.5 0.15 3.3E-06 38.2 12.2 90 85-185 94-184 (207)
210 PF06552 TOM20_plant: Plant sp 96.4 0.037 7.9E-07 41.0 8.6 53 95-153 51-113 (186)
211 PF12968 DUF3856: Domain of Un 96.4 0.19 4E-06 34.8 12.5 98 52-152 21-132 (144)
212 PF13174 TPR_6: Tetratricopept 96.4 0.008 1.7E-07 30.9 3.8 31 121-152 2-32 (33)
213 PF11207 DUF2989: Protein of u 96.3 0.15 3.2E-06 38.5 11.6 60 117-180 139-198 (203)
214 KOG1070|consensus 96.3 0.067 1.4E-06 50.5 11.6 136 34-186 1524-1660(1710)
215 PF12569 NARP1: NMDA receptor- 96.3 0.13 2.8E-06 44.5 12.8 91 81-184 195-286 (517)
216 PF13374 TPR_10: Tetratricopep 96.3 0.015 3.3E-07 31.5 4.9 34 40-73 2-35 (42)
217 PF13181 TPR_8: Tetratricopept 96.3 0.016 3.4E-07 30.2 4.7 30 41-70 2-31 (34)
218 PF13431 TPR_17: Tetratricopep 96.3 0.002 4.4E-08 34.2 1.1 34 101-141 1-34 (34)
219 PRK11906 transcriptional regul 96.3 0.084 1.8E-06 44.5 11.0 130 37-185 251-397 (458)
220 KOG2376|consensus 96.3 0.11 2.3E-06 45.0 11.7 116 48-185 20-135 (652)
221 COG0790 FOG: TPR repeat, SEL1 96.3 0.42 9.2E-06 37.7 17.0 104 33-149 90-220 (292)
222 PF04184 ST7: ST7 protein; In 96.2 0.31 6.7E-06 41.6 13.7 121 52-185 180-320 (539)
223 PF04190 DUF410: Protein of un 96.1 0.41 8.9E-06 37.7 13.6 111 52-183 2-113 (260)
224 PF13174 TPR_6: Tetratricopept 96.1 0.0058 1.3E-07 31.5 2.3 25 162-186 2-26 (33)
225 PF04733 Coatomer_E: Coatomer 95.9 0.036 7.9E-07 44.3 7.3 118 43-185 105-226 (290)
226 COG3071 HemY Uncharacterized e 95.9 0.03 6.5E-07 46.0 6.6 91 4-115 306-397 (400)
227 KOG1839|consensus 95.8 0.12 2.7E-06 48.3 10.9 146 37-183 970-1122(1236)
228 KOG2047|consensus 95.8 0.55 1.2E-05 41.4 14.0 86 96-185 364-450 (835)
229 PF05843 Suf: Suppressor of fo 95.8 0.13 2.9E-06 40.8 9.7 127 43-185 4-132 (280)
230 KOG0545|consensus 95.7 0.17 3.6E-06 39.6 9.6 109 37-152 175-296 (329)
231 PF13512 TPR_18: Tetratricopep 95.7 0.099 2.1E-06 37.2 7.9 63 119-185 10-72 (142)
232 smart00028 TPR Tetratricopepti 95.7 0.017 3.8E-07 28.4 3.2 31 120-151 2-32 (34)
233 KOG2610|consensus 95.7 0.14 3.1E-06 41.7 9.5 143 30-185 113-272 (491)
234 KOG3785|consensus 95.7 0.17 3.6E-06 41.6 9.9 126 49-186 31-177 (557)
235 COG4700 Uncharacterized protei 95.6 0.45 9.7E-06 35.8 11.3 119 47-182 96-215 (251)
236 KOG0551|consensus 95.6 0.2 4.3E-06 40.7 10.1 110 66-184 67-177 (390)
237 COG3071 HemY Uncharacterized e 95.6 0.52 1.1E-05 39.0 12.4 117 47-185 270-386 (400)
238 KOG2041|consensus 95.5 1 2.2E-05 40.3 14.6 135 49-185 756-935 (1189)
239 COG0790 FOG: TPR repeat, SEL1 95.5 0.42 9.1E-06 37.8 11.8 131 32-185 53-216 (292)
240 PF10516 SHNi-TPR: SHNi-TPR; 95.5 0.034 7.3E-07 30.3 3.8 33 119-152 1-33 (38)
241 PF13428 TPR_14: Tetratricopep 95.5 0.023 5E-07 31.7 3.3 26 161-186 2-27 (44)
242 COG2976 Uncharacterized protei 95.3 0.88 1.9E-05 34.2 13.8 100 76-185 50-151 (207)
243 PF10516 SHNi-TPR: SHNi-TPR; 95.2 0.06 1.3E-06 29.3 4.2 33 41-73 2-34 (38)
244 KOG2047|consensus 95.1 1.4 3.1E-05 39.0 14.2 137 40-185 387-536 (835)
245 PF08626 TRAPPC9-Trs120: Trans 95.1 1.3 2.8E-05 42.4 15.3 142 40-182 242-467 (1185)
246 KOG2796|consensus 95.0 0.47 1E-05 37.6 10.1 122 52-185 189-311 (366)
247 KOG3024|consensus 95.0 1.4 3.1E-05 35.0 13.8 62 32-93 18-79 (312)
248 KOG2471|consensus 95.0 0.089 1.9E-06 44.8 6.6 84 81-171 284-380 (696)
249 PF08631 SPO22: Meiosis protei 94.9 0.68 1.5E-05 36.7 11.4 87 93-180 7-104 (278)
250 KOG4814|consensus 94.9 0.33 7.2E-06 42.6 9.8 96 81-183 356-451 (872)
251 KOG4642|consensus 94.8 0.073 1.6E-06 41.2 5.3 88 85-185 15-103 (284)
252 KOG1070|consensus 94.7 3.2 6.9E-05 39.9 16.2 114 54-185 1511-1625(1710)
253 KOG2300|consensus 94.5 2.7 5.9E-05 36.0 16.4 107 34-143 41-150 (629)
254 KOG1550|consensus 94.5 1.3 2.7E-05 38.8 12.8 130 36-185 228-389 (552)
255 PF02259 FAT: FAT domain; Int 94.5 2.1 4.5E-05 34.5 13.6 128 37-172 143-304 (352)
256 PF05843 Suf: Suppressor of fo 94.5 0.73 1.6E-05 36.6 10.5 80 94-185 16-95 (280)
257 PF13281 DUF4071: Domain of un 94.4 0.7 1.5E-05 38.3 10.5 120 53-185 195-330 (374)
258 PF03704 BTAD: Bacterial trans 94.3 1.2 2.6E-05 31.2 13.9 102 4-115 21-133 (146)
259 KOG4340|consensus 94.2 0.76 1.7E-05 37.1 9.8 86 92-184 157-265 (459)
260 KOG1550|consensus 94.2 1.5 3.2E-05 38.4 12.6 110 56-185 228-353 (552)
261 COG5091 SGT1 Suppressor of G2 94.1 0.43 9.3E-06 37.7 8.1 94 79-173 35-132 (368)
262 PF06552 TOM20_plant: Plant sp 94.1 0.21 4.5E-06 37.0 6.1 46 134-185 49-105 (186)
263 KOG3081|consensus 94.1 1.4 3E-05 34.9 10.7 71 103-180 190-261 (299)
264 KOG2581|consensus 93.9 2.6 5.6E-05 35.3 12.5 110 39-152 168-279 (493)
265 PF07721 TPR_4: Tetratricopept 93.9 0.15 3.2E-06 25.0 3.6 25 161-185 2-26 (26)
266 smart00028 TPR Tetratricopepti 93.8 0.09 1.9E-06 25.6 2.9 25 161-185 2-26 (34)
267 KOG4507|consensus 93.7 0.084 1.8E-06 45.8 3.9 95 47-153 614-709 (886)
268 KOG1538|consensus 93.4 2.2 4.8E-05 37.9 11.8 135 50-185 680-842 (1081)
269 cd02681 MIT_calpain7_1 MIT: do 93.3 1.2 2.6E-05 28.2 7.8 33 119-152 6-38 (76)
270 KOG4648|consensus 93.3 0.85 1.8E-05 37.5 8.7 92 8-110 90-196 (536)
271 KOG4507|consensus 93.2 0.15 3.3E-06 44.3 4.5 88 86-185 613-701 (886)
272 COG4700 Uncharacterized protei 92.8 3.2 7E-05 31.3 11.8 91 85-185 94-185 (251)
273 PF08631 SPO22: Meiosis protei 92.8 4 8.8E-05 32.3 16.0 128 52-185 5-146 (278)
274 PF11207 DUF2989: Protein of u 92.7 0.59 1.3E-05 35.3 6.7 61 79-142 140-200 (203)
275 KOG2796|consensus 92.7 2.6 5.7E-05 33.5 10.4 115 32-153 189-319 (366)
276 PF10579 Rapsyn_N: Rapsyn N-te 92.7 1.7 3.6E-05 27.7 8.3 65 87-155 14-78 (80)
277 KOG1308|consensus 92.6 0.11 2.3E-06 42.3 2.7 119 50-181 124-243 (377)
278 KOG1497|consensus 92.5 2.8 6E-05 34.1 10.4 104 80-185 103-209 (399)
279 COG4105 ComL DNA uptake lipopr 92.5 4.3 9.3E-05 31.8 14.6 142 38-186 33-193 (254)
280 KOG1497|consensus 92.5 3.6 7.8E-05 33.5 11.0 108 37-146 100-210 (399)
281 KOG4521|consensus 92.3 6.8 0.00015 37.1 13.9 139 28-177 893-1071(1480)
282 COG4785 NlpI Lipoprotein NlpI, 92.0 0.53 1.1E-05 36.2 5.7 64 115-185 61-124 (297)
283 PRK11906 transcriptional regul 91.9 5.3 0.00012 34.0 12.0 89 83-183 341-430 (458)
284 cd02682 MIT_AAA_Arch MIT: doma 91.9 2 4.2E-05 27.1 7.3 33 40-72 6-38 (75)
285 COG2909 MalT ATP-dependent tra 91.9 10 0.00022 34.9 16.4 129 52-183 427-562 (894)
286 COG2909 MalT ATP-dependent tra 91.6 11 0.00024 34.6 16.6 166 4-185 473-643 (894)
287 COG5159 RPN6 26S proteasome re 91.5 6.3 0.00014 31.7 12.6 100 83-183 48-148 (421)
288 PF04212 MIT: MIT (microtubule 91.4 0.81 1.8E-05 28.1 5.3 32 120-152 6-37 (69)
289 KOG4814|consensus 91.0 7.8 0.00017 34.5 12.2 102 43-152 358-460 (872)
290 KOG2114|consensus 90.9 6.2 0.00014 36.0 11.9 36 35-70 363-398 (933)
291 KOG1464|consensus 90.8 2.8 6.2E-05 33.5 8.8 144 34-185 24-170 (440)
292 cd02680 MIT_calpain7_2 MIT: do 90.8 2.3 5E-05 26.8 6.8 34 133-166 19-52 (75)
293 TIGR03504 FimV_Cterm FimV C-te 90.7 0.33 7.1E-06 27.3 2.7 23 164-186 3-25 (44)
294 PF04184 ST7: ST7 protein; In 90.7 10 0.00022 32.7 15.1 119 38-165 193-336 (539)
295 KOG1915|consensus 90.6 6.2 0.00013 34.0 11.0 85 52-149 85-170 (677)
296 PF10373 EST1_DNA_bind: Est1 D 90.5 0.63 1.4E-05 36.3 5.2 62 98-172 1-62 (278)
297 COG4785 NlpI Lipoprotein NlpI, 90.5 0.52 1.1E-05 36.3 4.3 95 76-183 61-156 (297)
298 PF10952 DUF2753: Protein of u 90.4 2.1 4.6E-05 29.8 6.9 62 122-184 4-74 (140)
299 PF12739 TRAPPC-Trs85: ER-Golg 90.4 9.9 0.00021 32.0 14.8 144 41-185 209-395 (414)
300 PF04053 Coatomer_WDAD: Coatom 90.3 11 0.00023 32.2 12.6 58 81-143 348-412 (443)
301 cd02680 MIT_calpain7_2 MIT: do 90.3 3.2 6.9E-05 26.2 9.1 36 36-72 3-38 (75)
302 PF12854 PPR_1: PPR repeat 90.3 0.72 1.6E-05 24.1 3.7 26 161-186 8-33 (34)
303 cd02682 MIT_AAA_Arch MIT: doma 90.0 1.3 2.9E-05 27.9 5.3 33 119-152 6-38 (75)
304 cd02683 MIT_1 MIT: domain cont 89.8 3.6 7.7E-05 26.0 7.9 31 121-152 8-38 (77)
305 PF04212 MIT: MIT (microtubule 89.8 1.8 3.9E-05 26.5 5.8 26 47-72 12-37 (69)
306 cd02683 MIT_1 MIT: domain cont 89.6 1.6 3.4E-05 27.7 5.5 35 37-72 4-38 (77)
307 PF02259 FAT: FAT domain; Int 89.6 9.4 0.0002 30.6 14.1 86 97-185 120-209 (352)
308 PRK13184 pknD serine/threonine 89.2 1.6 3.5E-05 40.5 7.2 100 49-152 484-584 (932)
309 KOG2471|consensus 89.0 1.8 3.9E-05 37.2 6.8 78 45-128 288-378 (696)
310 cd02681 MIT_calpain7_1 MIT: do 88.5 4.5 9.8E-05 25.5 8.2 30 43-72 9-38 (76)
311 PF01535 PPR: PPR repeat; Int 88.3 0.65 1.4E-05 23.0 2.6 25 162-186 2-26 (31)
312 COG5159 RPN6 26S proteasome re 88.1 12 0.00027 30.1 15.9 131 47-179 52-184 (421)
313 cd02684 MIT_2 MIT: domain cont 87.5 2.7 5.9E-05 26.4 5.5 36 36-72 3-38 (75)
314 KOG1839|consensus 87.1 5.2 0.00011 38.1 9.1 141 43-185 935-1082(1236)
315 cd02678 MIT_VPS4 MIT: domain c 86.9 3.1 6.6E-05 26.0 5.5 35 37-72 4-38 (75)
316 cd02679 MIT_spastin MIT: domai 86.7 2.2 4.8E-05 27.2 4.8 34 118-152 7-40 (79)
317 PF14853 Fis1_TPR_C: Fis1 C-te 86.6 2.3 5E-05 24.9 4.5 32 121-153 3-34 (53)
318 TIGR00756 PPR pentatricopeptid 86.5 1 2.2E-05 22.6 2.8 24 162-185 2-25 (35)
319 KOG4014|consensus 86.5 4.2 9.1E-05 30.6 6.7 90 52-149 39-141 (248)
320 COG3629 DnrI DNA-binding trans 86.1 3.8 8.2E-05 32.7 6.8 61 119-186 153-213 (280)
321 KOG0545|consensus 86.0 15 0.00033 29.0 10.5 100 79-185 177-289 (329)
322 KOG0686|consensus 86.0 20 0.00043 30.3 11.4 112 67-184 137-253 (466)
323 KOG3824|consensus 86.0 1.2 2.6E-05 36.1 3.9 68 78-152 115-182 (472)
324 KOG3081|consensus 85.9 16 0.00034 29.1 13.2 123 41-185 109-232 (299)
325 KOG1915|consensus 85.6 12 0.00025 32.4 9.6 130 52-186 378-533 (677)
326 PF04053 Coatomer_WDAD: Coatom 85.4 6.4 0.00014 33.5 8.3 40 143-186 334-373 (443)
327 PF14853 Fis1_TPR_C: Fis1 C-te 85.4 1.4 3E-05 25.8 3.1 25 161-185 2-26 (53)
328 KOG1920|consensus 85.0 21 0.00045 34.1 11.7 17 133-149 1026-1042(1265)
329 PF10579 Rapsyn_N: Rapsyn N-te 85.0 7.8 0.00017 24.7 7.8 47 134-183 20-66 (80)
330 KOG1914|consensus 84.9 26 0.00057 30.7 13.0 61 120-186 401-461 (656)
331 smart00745 MIT Microtubule Int 84.8 5.1 0.00011 25.0 5.9 37 35-72 4-40 (77)
332 PF15015 NYD-SP12_N: Spermatog 84.4 9.2 0.0002 32.4 8.5 96 81-183 178-285 (569)
333 cd02656 MIT MIT: domain contai 84.0 4 8.6E-05 25.4 5.1 30 122-152 9-38 (75)
334 KOG2053|consensus 83.7 11 0.00025 34.6 9.3 100 63-178 29-128 (932)
335 cd02677 MIT_SNX15 MIT: domain 83.7 4.3 9.2E-05 25.6 5.0 30 122-152 9-38 (75)
336 KOG1463|consensus 83.0 22 0.00047 29.4 9.9 113 49-162 137-251 (411)
337 PF07079 DUF1347: Protein of u 82.9 30 0.00064 29.8 16.6 62 116-186 460-521 (549)
338 KOG0376|consensus 82.5 1.6 3.4E-05 37.1 3.4 94 47-153 11-105 (476)
339 KOG2053|consensus 82.1 4.5 9.8E-05 37.0 6.2 75 102-186 29-103 (932)
340 PF07720 TPR_3: Tetratricopept 82.1 4.1 8.9E-05 21.7 3.9 24 161-184 2-25 (36)
341 smart00745 MIT Microtubule Int 81.8 10 0.00022 23.6 8.1 30 122-152 11-40 (77)
342 PF04781 DUF627: Protein of un 81.7 14 0.0003 25.2 10.6 90 50-149 6-107 (111)
343 KOG0686|consensus 81.6 18 0.00038 30.6 9.0 78 100-181 131-208 (466)
344 cd02678 MIT_VPS4 MIT: domain c 81.6 10 0.00022 23.6 8.2 29 123-152 10-38 (75)
345 KOG1464|consensus 81.5 23 0.00051 28.4 9.3 92 81-174 192-286 (440)
346 PF00244 14-3-3: 14-3-3 protei 81.0 24 0.00051 27.4 9.6 77 75-151 111-200 (236)
347 cd02656 MIT MIT: domain contai 80.7 7.6 0.00016 24.1 5.4 35 37-72 4-38 (75)
348 cd02684 MIT_2 MIT: domain cont 80.4 6.4 0.00014 24.7 5.0 26 126-152 13-38 (75)
349 PRK10941 hypothetical protein; 80.3 14 0.0003 29.3 8.0 67 111-184 173-239 (269)
350 cd02677 MIT_SNX15 MIT: domain 80.1 7 0.00015 24.5 5.1 35 37-72 4-38 (75)
351 KOG1308|consensus 80.0 1.3 2.9E-05 36.1 2.1 103 32-141 126-243 (377)
352 PF07720 TPR_3: Tetratricopept 79.8 7.3 0.00016 20.7 4.5 29 121-150 3-33 (36)
353 COG3947 Response regulator con 79.7 7.8 0.00017 31.2 6.2 57 122-185 282-338 (361)
354 smart00671 SEL1 Sel1-like repe 79.6 6 0.00013 20.1 4.1 26 82-107 3-33 (36)
355 KOG0276|consensus 79.4 25 0.00055 31.3 9.6 62 81-146 667-747 (794)
356 PF13812 PPR_3: Pentatricopept 79.0 3.8 8.2E-05 20.5 3.1 24 162-185 3-26 (34)
357 KOG3364|consensus 78.9 12 0.00026 26.7 6.3 63 119-185 32-96 (149)
358 PF13041 PPR_2: PPR repeat fam 78.8 3.3 7.2E-05 23.3 3.1 25 161-185 4-28 (50)
359 PF15015 NYD-SP12_N: Spermatog 78.6 41 0.00089 28.7 11.8 113 34-153 170-295 (569)
360 cd02679 MIT_spastin MIT: domai 77.7 9.3 0.0002 24.3 5.1 18 94-111 23-40 (79)
361 KOG0376|consensus 76.8 1.7 3.8E-05 36.9 2.0 80 93-185 18-97 (476)
362 KOG4014|consensus 76.5 17 0.00037 27.4 6.8 83 95-185 43-137 (248)
363 TIGR03504 FimV_Cterm FimV C-te 76.0 6.6 0.00014 21.9 3.7 25 123-148 3-27 (44)
364 KOG3824|consensus 75.8 14 0.00031 30.1 6.7 56 122-185 120-175 (472)
365 KOG1920|consensus 75.6 23 0.00049 33.8 8.7 105 72-185 863-977 (1265)
366 KOG4322|consensus 75.4 51 0.0011 28.1 12.0 91 94-185 288-378 (482)
367 PRK13184 pknD serine/threonine 74.5 7.7 0.00017 36.2 5.6 83 98-184 487-576 (932)
368 KOG3783|consensus 73.2 64 0.0014 28.2 10.4 79 73-152 442-523 (546)
369 KOG2561|consensus 72.5 31 0.00068 29.5 8.2 80 6-86 228-313 (568)
370 PF12739 TRAPPC-Trs85: ER-Golg 72.2 59 0.0013 27.4 17.6 57 118-174 340-404 (414)
371 KOG4322|consensus 71.2 65 0.0014 27.5 15.9 143 34-178 267-457 (482)
372 PF12309 KBP_C: KIF-1 binding 70.7 61 0.0013 27.0 13.1 119 68-186 159-335 (371)
373 KOG1463|consensus 70.2 62 0.0013 26.8 16.7 136 46-183 54-191 (411)
374 COG4976 Predicted methyltransf 67.9 11 0.00023 29.5 4.3 56 31-91 6-75 (287)
375 KOG2581|consensus 67.6 77 0.0017 26.9 15.4 143 39-185 123-272 (493)
376 KOG3783|consensus 67.6 86 0.0019 27.5 14.0 73 112-185 442-516 (546)
377 KOG0890|consensus 67.5 80 0.0017 32.7 10.8 82 95-185 1645-1727(2382)
378 PF08238 Sel1: Sel1 repeat; I 67.1 16 0.00034 18.8 4.6 30 120-149 2-37 (39)
379 KOG1538|consensus 67.1 1E+02 0.0022 28.1 12.7 23 162-184 749-771 (1081)
380 PF05053 Menin: Menin; InterP 66.3 93 0.002 27.6 9.9 92 35-127 275-366 (618)
381 PF08626 TRAPPC9-Trs120: Trans 65.6 18 0.00039 34.9 6.2 57 116-173 239-295 (1185)
382 PF14561 TPR_20: Tetratricopep 65.5 21 0.00045 23.2 4.8 40 140-185 8-47 (90)
383 PF10255 Paf67: RNA polymerase 65.0 49 0.0011 27.9 8.0 63 122-186 125-190 (404)
384 COG3118 Thioredoxin domain-con 65.0 22 0.00048 28.6 5.6 46 134-185 148-193 (304)
385 KOG4521|consensus 64.9 1.4E+02 0.0031 29.0 15.8 152 30-182 930-1124(1480)
386 PF04781 DUF627: Protein of un 64.8 42 0.00091 22.9 10.3 88 88-185 5-103 (111)
387 COG1747 Uncharacterized N-term 64.7 1E+02 0.0022 27.2 10.2 26 124-151 137-162 (711)
388 PF13281 DUF4071: Domain of un 64.0 86 0.0019 26.2 12.2 111 67-185 127-251 (374)
389 PF09670 Cas_Cas02710: CRISPR- 61.7 94 0.002 25.9 14.5 98 50-152 141-273 (379)
390 KOG2908|consensus 61.4 93 0.002 25.7 15.1 98 49-149 84-183 (380)
391 KOG2114|consensus 60.8 1.4E+02 0.0031 27.7 15.6 18 30-47 378-395 (933)
392 COG4976 Predicted methyltransf 60.1 20 0.00044 28.0 4.5 13 6-18 12-24 (287)
393 PF10952 DUF2753: Protein of u 60.0 57 0.0012 22.9 9.1 64 47-110 8-81 (140)
394 PF04097 Nic96: Nup93/Nic96; 59.6 1.3E+02 0.0028 26.9 13.0 12 134-145 519-530 (613)
395 KOG2041|consensus 59.5 1.5E+02 0.0032 27.4 17.4 27 42-68 798-824 (1189)
396 KOG0985|consensus 59.5 1.7E+02 0.0038 28.2 11.1 51 121-183 1106-1156(1666)
397 COG1516 FliS Flagellin-specifi 58.6 57 0.0012 23.0 6.2 46 86-131 38-86 (132)
398 COG5187 RPN7 26S proteasome re 58.4 1E+02 0.0022 25.2 15.2 124 57-184 92-216 (412)
399 PF10373 EST1_DNA_bind: Est1 D 58.0 24 0.00051 27.4 4.8 25 43-67 19-43 (278)
400 COG5187 RPN7 26S proteasome re 57.8 1E+02 0.0022 25.1 9.2 75 97-172 93-167 (412)
401 PF04097 Nic96: Nup93/Nic96; 56.7 1.5E+02 0.0032 26.6 13.1 33 35-67 409-441 (613)
402 COG5290 IkappaB kinase complex 54.1 1.3E+02 0.0028 28.1 8.9 28 121-149 937-964 (1243)
403 KOG3807|consensus 53.8 1.3E+02 0.0028 25.1 9.2 24 162-185 277-300 (556)
404 PF00244 14-3-3: 14-3-3 protei 53.7 1E+02 0.0022 23.8 15.9 86 99-185 91-194 (236)
405 PF02064 MAS20: MAS20 protein 53.3 22 0.00048 24.6 3.4 30 122-152 66-95 (121)
406 KOG1938|consensus 53.0 92 0.002 29.3 8.1 56 94-151 331-386 (960)
407 smart00101 14_3_3 14-3-3 homol 52.8 1.1E+02 0.0024 23.9 9.5 74 76-150 114-201 (244)
408 KOG2709|consensus 52.5 23 0.00049 30.0 3.9 34 118-152 21-54 (560)
409 smart00101 14_3_3 14-3-3 homol 52.4 1.1E+02 0.0024 23.9 8.1 85 99-184 93-195 (244)
410 KOG0687|consensus 52.3 1.3E+02 0.0029 24.8 15.5 102 76-184 100-205 (393)
411 PF10255 Paf67: RNA polymerase 52.2 1.3E+02 0.0028 25.5 8.4 76 37-113 117-198 (404)
412 KOG0985|consensus 51.2 2.4E+02 0.0052 27.4 12.1 24 161-184 1221-1244(1666)
413 KOG3192|consensus 50.1 98 0.0021 22.5 8.6 53 94-148 103-156 (168)
414 KOG0739|consensus 46.7 98 0.0021 25.5 6.5 37 3-51 5-41 (439)
415 PF08969 USP8_dimer: USP8 dime 46.2 64 0.0014 21.8 4.9 33 119-152 38-70 (115)
416 PHA02537 M terminase endonucle 45.3 1.4E+02 0.0031 23.1 10.5 121 34-156 65-214 (230)
417 KOG0890|consensus 44.4 4.1E+02 0.0089 28.1 14.7 107 37-152 1667-1787(2382)
418 cd09239 BRO1_HD-PTP_like Prote 43.7 1.9E+02 0.0041 24.0 9.0 17 56-72 139-155 (361)
419 KOG1310|consensus 43.3 77 0.0017 28.0 5.8 102 37-151 371-476 (758)
420 KOG3024|consensus 43.1 1.8E+02 0.0038 23.5 13.1 111 30-144 36-151 (312)
421 smart00386 HAT HAT (Half-A-TPR 42.8 40 0.00087 16.0 3.8 19 134-152 1-19 (33)
422 PF05053 Menin: Menin; InterP 42.5 2.5E+02 0.0054 25.0 13.0 110 58-169 255-367 (618)
423 KOG0687|consensus 42.5 2E+02 0.0043 23.9 16.4 112 38-152 102-213 (393)
424 cd09241 BRO1_ScRim20-like Prot 42.4 1.9E+02 0.0042 23.8 9.2 18 55-72 130-147 (355)
425 KOG0739|consensus 42.2 54 0.0012 26.9 4.4 19 133-151 23-41 (439)
426 cd00280 TRFH Telomeric Repeat 42.1 1E+02 0.0023 23.2 5.6 23 164-186 115-137 (200)
427 cd09240 BRO1_Alix Protein-inte 41.7 2E+02 0.0043 23.6 10.3 17 56-72 144-160 (346)
428 smart00299 CLH Clathrin heavy 41.5 1.1E+02 0.0025 20.8 9.0 52 46-103 13-64 (140)
429 KOG2908|consensus 41.4 2.1E+02 0.0045 23.8 14.7 84 94-178 90-175 (380)
430 PF03635 Vps35: Vacuolar prote 41.2 3E+02 0.0064 25.5 17.0 131 36-170 588-735 (762)
431 PF02561 FliS: Flagellar prote 40.9 1.1E+02 0.0025 20.7 6.1 36 36-72 26-61 (122)
432 PF14689 SPOB_a: Sensor_kinase 40.5 39 0.00085 20.2 2.8 19 167-185 30-48 (62)
433 PF08311 Mad3_BUB1_I: Mad3/BUB 40.3 55 0.0012 22.6 3.9 81 97-185 44-124 (126)
434 KOG1938|consensus 39.1 1.9E+02 0.0041 27.3 7.9 91 80-171 271-367 (960)
435 COG4259 Uncharacterized protei 39.0 54 0.0012 22.1 3.4 36 118-154 71-106 (121)
436 PF02064 MAS20: MAS20 protein 37.7 97 0.0021 21.4 4.7 24 47-70 70-93 (121)
437 PF15297 CKAP2_C: Cytoskeleton 37.7 87 0.0019 25.9 5.1 38 111-149 132-169 (353)
438 KOG0276|consensus 37.6 1.2E+02 0.0027 27.2 6.2 25 161-185 667-691 (794)
439 KOG2610|consensus 37.4 2.5E+02 0.0054 23.6 12.4 59 120-185 176-234 (491)
440 PF09094 DUF1925: Domain of un 36.5 47 0.001 21.2 2.7 28 25-54 1-28 (80)
441 PF04348 LppC: LppC putative l 36.1 12 0.00026 32.7 0.0 56 122-181 64-119 (536)
442 PF08969 USP8_dimer: USP8 dime 35.9 1E+02 0.0022 20.7 4.6 39 35-73 33-71 (115)
443 PF10607 CLTH: CTLH/CRA C-term 35.9 1.4E+02 0.0031 20.6 5.6 50 134-184 15-64 (145)
444 PF13170 DUF4003: Protein of u 35.3 2.4E+02 0.0051 22.7 13.9 94 10-112 36-129 (297)
445 KOG2066|consensus 35.0 3.8E+02 0.0082 24.9 10.8 25 44-68 509-533 (846)
446 cd08977 SusD starch binding ou 34.1 1.2E+02 0.0026 24.6 5.6 31 156-186 172-207 (359)
447 PF10366 Vps39_1: Vacuolar sor 34.1 48 0.001 22.3 2.7 24 162-185 41-64 (108)
448 COG2912 Uncharacterized conser 33.9 2.1E+02 0.0046 22.8 6.6 64 114-184 176-239 (269)
449 COG3947 Response regulator con 33.6 2.7E+02 0.0058 22.8 8.2 23 47-69 286-308 (361)
450 PF07079 DUF1347: Protein of u 33.4 3.3E+02 0.0071 23.8 12.7 132 47-186 13-154 (549)
451 smart00299 CLH Clathrin heavy 33.3 1.6E+02 0.0034 20.1 14.0 110 34-172 21-137 (140)
452 KOG1998|consensus 33.2 2.9E+02 0.0064 27.7 8.4 52 80-131 1117-1170(1548)
453 COG3118 Thioredoxin domain-con 33.1 2.7E+02 0.0058 22.6 11.7 54 121-179 238-291 (304)
454 TIGR00985 3a0801s04tom mitocho 32.8 74 0.0016 22.9 3.6 30 122-152 93-123 (148)
455 COG1655 Uncharacterized protei 32.5 2.4E+02 0.0053 22.0 7.7 31 121-151 201-231 (267)
456 PF09613 HrpB1_HrpK: Bacterial 32.0 2E+02 0.0044 20.9 8.1 50 120-176 45-94 (160)
457 KOG3364|consensus 31.9 1.9E+02 0.0042 20.7 6.5 66 82-152 34-103 (149)
458 KOG0889|consensus 31.2 7.8E+02 0.017 27.5 12.3 94 56-153 2732-2845(3550)
459 cd09247 BRO1_Alix_like_2 Prote 31.1 2.3E+02 0.0049 23.3 6.7 57 96-153 213-286 (346)
460 PF12309 KBP_C: KIF-1 binding 31.1 3.1E+02 0.0068 22.8 8.8 74 97-171 149-233 (371)
461 PF04348 LppC: LppC putative l 30.9 16 0.00035 31.9 0.0 108 37-151 21-129 (536)
462 KOG0396|consensus 29.7 3.4E+02 0.0073 22.8 9.0 51 134-185 166-216 (389)
463 PRK05685 fliS flagellar protei 29.4 2E+02 0.0043 20.0 7.0 35 36-71 32-66 (132)
464 KOG0546|consensus 29.3 98 0.0021 25.7 4.1 111 35-152 217-341 (372)
465 PF12234 Rav1p_C: RAVE protein 29.2 4.4E+02 0.0094 23.9 10.6 100 26-143 441-551 (631)
466 PF12753 Nro1: Nuclear pore co 28.4 26 0.00057 29.4 0.8 37 138-175 329-365 (404)
467 PF08311 Mad3_BUB1_I: Mad3/BUB 28.4 2E+02 0.0043 19.8 5.1 34 113-147 93-126 (126)
468 COG5091 SGT1 Suppressor of G2 28.0 3.2E+02 0.0069 22.1 6.6 60 55-114 54-114 (368)
469 PF07575 Nucleopor_Nup85: Nup8 28.0 1.4E+02 0.003 26.3 5.2 49 100-149 406-454 (566)
470 KOG4563|consensus 27.6 3.7E+02 0.0079 22.6 7.1 38 35-72 36-73 (400)
471 cd09246 BRO1_Alix_like_1 Prote 26.9 3.6E+02 0.0078 22.2 9.5 18 56-73 136-153 (353)
472 PF07980 SusD: SusD family; I 26.9 85 0.0018 23.8 3.4 27 160-186 133-159 (266)
473 PF12753 Nro1: Nuclear pore co 26.3 2.7E+02 0.0059 23.6 6.2 52 97-152 336-387 (404)
474 cd09243 BRO1_Brox_like Protein 25.9 3.8E+02 0.0083 22.2 10.0 17 56-72 137-153 (353)
475 COG4649 Uncharacterized protei 25.3 3E+02 0.0065 20.8 12.3 127 50-186 49-193 (221)
476 PF14561 TPR_20: Tetratricopep 24.5 2E+02 0.0044 18.4 7.0 51 120-175 23-73 (90)
477 KOG2168|consensus 23.7 6.2E+02 0.013 23.8 11.1 34 36-69 618-651 (835)
478 COG3629 DnrI DNA-binding trans 23.5 3.9E+02 0.0084 21.4 8.5 44 103-146 191-236 (280)
479 PF10938 YfdX: YfdX protein; 23.5 2.9E+02 0.0062 19.8 7.0 32 4-47 71-102 (155)
480 PF14649 Spatacsin_C: Spatacsi 23.4 2.2E+02 0.0048 23.0 5.2 67 7-73 137-208 (296)
481 TIGR00985 3a0801s04tom mitocho 23.1 2.8E+02 0.0061 19.9 5.1 36 35-70 82-121 (148)
482 KOG0889|consensus 22.8 5.4E+02 0.012 28.5 8.5 80 37-122 2809-2897(3550)
483 cd09248 BRO1_Rhophilin_1 Prote 22.3 1.7E+02 0.0037 24.6 4.5 35 116-151 103-146 (384)
484 KOG4563|consensus 22.1 4.8E+02 0.01 22.0 6.9 62 118-180 40-103 (400)
485 COG1516 FliS Flagellin-specifi 22.1 2.9E+02 0.0063 19.4 6.9 35 37-72 29-63 (132)
486 cd09245 BRO1_UmRIM23-like Prot 22.0 4.9E+02 0.011 22.1 7.4 55 97-152 255-328 (413)
487 cd09242 BRO1_ScBro1_like Prote 22.0 4.5E+02 0.0097 21.6 8.1 148 38-185 105-269 (348)
488 PRK10941 hypothetical protein; 22.0 4.1E+02 0.0088 21.1 8.4 67 81-154 182-249 (269)
489 cd09034 BRO1_Alix_like Protein 21.6 4.2E+02 0.009 21.4 6.6 57 96-153 210-284 (345)
490 COG5453 Uncharacterized conser 21.4 31 0.00066 22.5 -0.0 11 25-35 2-12 (96)
491 KOG4279|consensus 21.3 3.1E+02 0.0066 25.7 5.9 55 52-111 255-319 (1226)
492 COG1655 Uncharacterized protei 21.0 4.1E+02 0.0089 20.8 6.3 40 96-136 111-151 (267)
493 PF08006 DUF1700: Protein of u 21.0 3.4E+02 0.0073 19.7 5.9 58 9-84 4-61 (181)
494 COG3014 Uncharacterized protei 21.0 5.1E+02 0.011 21.8 7.9 85 98-186 40-151 (449)
495 COG5116 RPN2 26S proteasome re 20.8 2E+02 0.0043 25.9 4.6 21 48-68 67-87 (926)
496 KOG1914|consensus 20.5 6.3E+02 0.014 22.7 12.2 37 76-112 282-326 (656)
497 PF11334 DUF3136: Protein of u 20.4 1.9E+02 0.0042 17.5 3.2 41 133-173 3-46 (64)
498 KOG2709|consensus 20.4 1.5E+02 0.0033 25.4 3.7 32 80-111 22-54 (560)
499 TIGR02561 HrpB1_HrpK type III 20.3 3.5E+02 0.0075 19.6 7.7 21 125-146 50-70 (153)
500 TIGR02710 CRISPR-associated pr 20.1 5.3E+02 0.012 21.7 8.0 75 108-184 119-195 (380)
No 1
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=100.00 E-value=2.2e-32 Score=216.72 Aligned_cols=179 Identities=45% Similarity=0.703 Sum_probs=160.2
Q ss_pred HhHHHHHHHHHHhhccCCCCccccccC--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy5288 6 QKARQLVAEAEKKISSSSKGFFSQFTG--GNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCF 83 (186)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~ 83 (186)
++|++++++|+|.++ ++.|||+ +|+ +++|++|+++|.+||+.|+..|++++|+++|.++++++.+++++..++.+|
T Consensus 1 ~~a~~l~~~Aek~lk-~~~~~~~-~f~~~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~ 78 (282)
T PF14938_consen 1 QEAEELIKEAEKKLK-KSSGFFS-FFGSKKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAY 78 (282)
T ss_dssp -HHHHHHHHHHHHCS----TCCC-HH--SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHhc-cccchhh-hcCCCCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 479999999999999 6567884 674 469999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHH
Q psy5288 84 VDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCL 163 (186)
Q Consensus 84 ~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~ 163 (186)
.+++.+|.+.++++|+++|++|++++...|++..++.++.++|.+|+..+|++++|+++|++|+++++..+.+.....++
T Consensus 79 ~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~ 158 (282)
T PF14938_consen 79 EEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECL 158 (282)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHH
Confidence 99999999999999999999999999999999999999999999999844899999999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHHHHHhC
Q psy5288 164 IKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 164 ~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
.++|.++.++|+|++|++.|+++
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999864
No 2
>KOG1586|consensus
Probab=99.98 E-value=9.6e-31 Score=195.56 Aligned_cols=178 Identities=56% Similarity=0.921 Sum_probs=169.9
Q ss_pred HhHHHHHHHHHHhhccCCCCcccccc-CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy5288 6 QKARQLVAEAEKKISSSSKGFFSQFT-GGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFV 84 (186)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~ 84 (186)
.+|..++++|+|.++ ++.||. +| +++++++|+++|.++++.|+..++++.|..+|.++++++.+.|+.+.++.+|-
T Consensus 2 ~~a~~l~k~AEkK~~-~s~gF~--lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~Yv 78 (288)
T KOG1586|consen 2 SDAVQLMKKAEKKLN-GSGGFL--LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYV 78 (288)
T ss_pred ccHHHHHHHHHHhcc-cCCccc--ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 478899999999999 777876 45 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHH
Q psy5288 85 DAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLI 164 (186)
Q Consensus 85 ~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~ 164 (186)
+++.||++.++.+|++|+++|++|++..|++..+|..+..||.+|++.|.++++||.+|++|.++|........++.|++
T Consensus 79 eA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l 158 (288)
T KOG1586|consen 79 EAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL 158 (288)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999889999999999999999998877788889999
Q ss_pred HHHHHHHhccCHHHHHHHHHhC
Q psy5288 165 KIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 165 ~la~~y~~~g~~~~A~~~~~~~ 186 (186)
+.|..-..+++|.+||..|++|
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQV 180 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 3
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.84 E-value=1.8e-18 Score=137.13 Aligned_cols=169 Identities=20% Similarity=0.240 Sum_probs=141.4
Q ss_pred hHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHH--------------------HHhcCCHHHHHHHH
Q psy5288 4 NEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNL--------------------FKLGKKWNDGGNAF 63 (186)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~--------------------~~~~g~~~~A~~~y 63 (186)
+.++|.++..+|.++++ ..++|++|.++|.+++.+ |+.. ++++|+++|
T Consensus 30 ~~e~Aa~~y~~Aa~~fk-----------~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~ 97 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFK-----------LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH-----------HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence 56899999999999998 235777777777777554 4443 788899999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy5288 64 LQAGTLHLKNNNKHDAGLCFVDAANCYKKS--NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAID 141 (186)
Q Consensus 64 ~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~--~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~ 141 (186)
.+|++++...|++..++.++.++|.+|... ++++|+++|++|++++...+.+..+..++.++|.++.. +|+|++|++
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~-l~~y~~A~~ 176 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR-LGRYEEAIE 176 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH-hCCHHHHHH
Confidence 999999999999999999999999999886 99999999999999999999999999999999999999 599999999
Q ss_pred HHHHHHHHHhccC-ChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 142 HYQHAADCYAGEE-NKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 142 ~y~kA~~l~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.|++.+....+.+ ........+.+.+.++...||+..|.+.|++
T Consensus 177 ~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 177 IYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998765544 3445667888999999999999999998875
No 4
>KOG1585|consensus
Probab=99.83 E-value=1.7e-18 Score=130.85 Aligned_cols=174 Identities=20% Similarity=0.220 Sum_probs=154.6
Q ss_pred CCchHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHH
Q psy5288 1 MADNEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAG 80 (186)
Q Consensus 1 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa 80 (186)
||+. +...+.+|..++. ..- + -++++|+-|+..|++++..|+...+|++|..|..+|.+.+....++..++
T Consensus 1 MS~~---aakki~ea~e~~a---~t~-~--~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAA 71 (308)
T KOG1585|consen 1 MSSD---AAKKISEADEMTA---LTL-T--RWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAA 71 (308)
T ss_pred CCcc---HHHHHHHHHHHHH---HHh-h--ccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 5554 3455666666655 221 0 14689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHH
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSA 159 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~ 159 (186)
.+|..++-+.++. .+.+++.+|++|..+|.+.|.++-++-.+.+.|.+.++ -+++.|++.|++++.+++..+.-..+
T Consensus 72 KayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len--v~Pd~AlqlYqralavve~~dr~~ma 149 (308)
T KOG1585|consen 72 KAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN--VKPDDALQLYQRALAVVEEDDRDQMA 149 (308)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHhccchHHHH
Confidence 9999999998887 89999999999999999999999999999999999998 59999999999999999998888888
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 160 NKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 160 ~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...+..++.+|+++.+|++|...|.+
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 88999999999999999999887764
No 5
>KOG1840|consensus
Probab=99.62 E-value=2.2e-13 Score=114.87 Aligned_cols=171 Identities=22% Similarity=0.214 Sum_probs=144.2
Q ss_pred HhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cC-ChhHHHHHH
Q psy5288 6 QKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK-NN-NKHDAGLCF 83 (186)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~-~~-~~~~aa~~~ 83 (186)
++|+.+.+.|-+.+. .+| + .+...-..+....|.+|..++++.+|+..|++|+.+... .| +....+..+
T Consensus 216 e~A~~l~k~Al~~l~---k~~-----G-~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 216 EKAEPLCKQALRILE---KTS-----G-LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHHHHHHHHHHHH---Hcc-----C-ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 577888888877776 332 1 245556666667899999999999999999999999986 33 455678899
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CChHH
Q psy5288 84 VDAANCYKKS-NPAEAIKAIERAVEIHTDM--GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE--ENKSS 158 (186)
Q Consensus 84 ~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~--~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~--~~~~~ 158 (186)
.+++..|-.. ++++|..++++|++|+... .+++.++..+.+++.++..+ +++++|+.+|++++.++.+. ...+.
T Consensus 287 ~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~-~~~Eea~~l~q~al~i~~~~~g~~~~~ 365 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM-NEYEEAKKLLQKALKIYLDAPGEDNVN 365 (508)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHhhccccchH
Confidence 9999999876 9999999999999999774 47789999999999999996 99999999999999998852 24446
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 159 ANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 159 ~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
.+.++.+||.+|...|+|++|.+.|+++
T Consensus 366 ~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 366 LAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 6789999999999999999999999763
No 6
>KOG1586|consensus
Probab=99.60 E-value=2.5e-13 Score=102.49 Aligned_cols=180 Identities=20% Similarity=0.203 Sum_probs=137.0
Q ss_pred chHHhHHHHHHHHHHhhccCC------CCcc---ccccCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q psy5288 3 DNEQKARQLVAEAEKKISSSS------KGFF---SQFTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKN 73 (186)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~------~~~~---~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~ 73 (186)
+-.++|.+|..+|...++..+ ..|. ..-...++-+++++.|..+++.|++. ++++|++|.+++.+|+-..
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~ 106 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDM 106 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhh
Confidence 445899999999988877321 1111 00012345556666777777777765 8999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q psy5288 74 NNKHDAGLCFVDAANCYKKS--NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 74 ~~~~~aa~~~~~a~~~y~~~--~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~ 151 (186)
|+...++.++.++|++|..- ++.+|+.+|++|.+.+........+..|+.+.+..-.. +++|.+||..|++...-.-
T Consensus 107 Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~-leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 107 GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ-LEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999865 89999999999999999999889999999999998777 7999999999999888655
Q ss_pred ccC-ChHHHHHHHHHHHHHHHhccCH---HHHHHHHH
Q psy5288 152 GEE-NKSSANKCLIKIANYSALTDHL---DKAIKLYE 184 (186)
Q Consensus 152 ~~~-~~~~~~~~~~~la~~y~~~g~~---~~A~~~~~ 184 (186)
+++ .......++..-|.++.-..|. ..|++-|+
T Consensus 186 ~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~ 222 (288)
T KOG1586|consen 186 DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQ 222 (288)
T ss_pred cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHH
Confidence 443 2234446778888888775554 44444443
No 7
>KOG4626|consensus
Probab=99.57 E-value=5.7e-14 Score=118.25 Aligned_cols=135 Identities=24% Similarity=0.304 Sum_probs=80.6
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHH
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPA 96 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~ 96 (186)
..|..|-|+++|.++ ++..+..|+..+|.+||.+++.+. |. .+.+..++|.+|.+. ..+
T Consensus 298 eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-----p~-hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-----PN-HADAMNNLGNIYREQGKIE 371 (966)
T ss_pred ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-----Cc-cHHHHHHHHHHHHHhccch
Confidence 335556666665555 445566666666666666666652 22 234455666666655 666
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCH
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHL 176 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~ 176 (186)
+|.+.|++|++++... +..+.+||.+|.++ |++++|+.+|++|+.|-+. .++.+.|+|++|...|+.
T Consensus 372 ~A~~ly~~al~v~p~~------aaa~nNLa~i~kqq-gnl~~Ai~~YkealrI~P~------fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 372 EATRLYLKALEVFPEF------AAAHNNLASIYKQQ-GNLDDAIMCYKEALRIKPT------FADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHHHHHHhhChhh------hhhhhhHHHHHHhc-ccHHHHHHHHHHHHhcCch------HHHHHHhcchHHHHhhhH
Confidence 6777777766665444 44666667776665 6777777777766666432 235556666666666666
Q ss_pred HHHHHHHHh
Q psy5288 177 DKAIKLYEQ 185 (186)
Q Consensus 177 ~~A~~~~~~ 185 (186)
+.|+..|++
T Consensus 439 ~~A~q~y~r 447 (966)
T KOG4626|consen 439 SAAIQCYTR 447 (966)
T ss_pred HHHHHHHHH
Confidence 666655544
No 8
>KOG1840|consensus
Probab=99.55 E-value=1.5e-12 Score=109.86 Aligned_cols=172 Identities=19% Similarity=0.169 Sum_probs=145.7
Q ss_pred hHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--cCChhHHHH
Q psy5288 4 NEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK--NNNKHDAGL 81 (186)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~--~~~~~~aa~ 81 (186)
...+|..++++|-..+. .. || ++.+..+..+.+++..|...|++.+|..++.+|++|+.+ .-++...+.
T Consensus 256 k~~eAv~ly~~AL~i~e---~~-----~G-~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 256 KYDEAVNLYEEALTIRE---EV-----FG-EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred cHHHHHHHHHHHHHHHH---Hh-----cC-CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 34678888888877777 22 34 566788888888899999999999999999999999997 235667778
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-C-ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC--Ch
Q psy5288 82 CFVDAANCYKKS-NPAEAIKAIERAVEIHTDM-G-RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE--NK 156 (186)
Q Consensus 82 ~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~-~-~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~--~~ 156 (186)
.+.+++.++... ++++|+.+++++++|+... | +....+.++.++|.+|..+ |++++|.++|++|+.+.++.+ ..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~-gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKM-GKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHhcccCcC
Confidence 888998888766 9999999999999999844 3 4458999999999999997 999999999999999988743 34
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 157 SSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 157 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...+..+++||..|.+.+++.+|...|.+
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 55568899999999999999999999875
No 9
>KOG1130|consensus
Probab=99.55 E-value=5.9e-14 Score=113.51 Aligned_cols=138 Identities=14% Similarity=0.218 Sum_probs=118.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC---------------------CHHHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS---------------------NPAEAIKAIERA 105 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~---------------------~~~~A~~~~~~A 105 (186)
|+.++.+|.|++|+.|..+-+++.+.+|+.-..+.+|.++|.+|-.. .++.|+++|+.-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 55677888899999999999999999999888888999999998641 145778888888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 106 VEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 106 l~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+++..++|+..-++.++-+||+.|.- ||++++||.+.+.=+.|.++-+++......+.|||++++-+|+++-|+++|++
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYl-LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYL-LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeee-eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 88888889888888899999999887 79999999999999999888888888888999999999999999999998864
No 10
>KOG4626|consensus
Probab=99.54 E-value=9.2e-14 Score=117.04 Aligned_cols=135 Identities=22% Similarity=0.328 Sum_probs=119.1
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHH
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPA 96 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~ 96 (186)
.+|+.++|..||.++ |++|+.+|.+++|...|.+++.++ | +-+..+.++|.+|... +++
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-----p-~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-----P-EFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-----h-hhhhhhhhHHHHHHhcccHH
Confidence 347999999999988 789999999999999999999994 3 4456678999999987 999
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCH
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHL 176 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~ 176 (186)
+|+.||+.|++|-.. .|..+.++|..|..+ |+.+.|+.+|.+|+.+.+. .++...|||.+|...|+.
T Consensus 406 ~Ai~~YkealrI~P~------fAda~~NmGnt~ke~-g~v~~A~q~y~rAI~~nPt------~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 406 DAIMCYKEALRIKPT------FADALSNMGNTYKEM-GDVSAAIQCYTRAIQINPT------FAEAHSNLASIYKDSGNI 472 (966)
T ss_pred HHHHHHHHHHhcCch------HHHHHHhcchHHHHh-hhHHHHHHHHHHHHhcCcH------HHHHHhhHHHHhhccCCc
Confidence 999999999998654 467999999999995 9999999999999998543 347899999999999999
Q ss_pred HHHHHHHHh
Q psy5288 177 DKAIKLYEQ 185 (186)
Q Consensus 177 ~~A~~~~~~ 185 (186)
.+||..|+.
T Consensus 473 ~~AI~sY~~ 481 (966)
T KOG4626|consen 473 PEAIQSYRT 481 (966)
T ss_pred HHHHHHHHH
Confidence 999999875
No 11
>KOG1585|consensus
Probab=99.51 E-value=4e-12 Score=96.64 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGR 114 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~ 114 (186)
.+--|+..|++++.+.+.+..++++.++|++|..+|...|.|+.++-++.+++++.+..+|++|+..|++++.+....+.
T Consensus 66 slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr 145 (308)
T KOG1585|consen 66 SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR 145 (308)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch
Confidence 44556677777788888889999999999999999999999999999999999999988999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 115 FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 115 ~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...+-..+...++++.. +..+++|...+.+-..++............++-.-.||.-..||..|-++|+.
T Consensus 146 ~~ma~el~gk~sr~lVr-l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 146 DQMAFELYGKCSRVLVR-LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHHHHHHhhhHhhh-hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 99999999999999998 79999999999999998877654444334444444555556799999988864
No 12
>KOG1130|consensus
Probab=99.42 E-value=2.9e-12 Score=103.82 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=127.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENI 125 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~l 125 (186)
|+.|.-+|+|++|+...+.=+.|.+..|+....-.++.++|.+|.-+ +++.|+++|++.+.+..++|+....|+.+..|
T Consensus 202 GNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSL 281 (639)
T KOG1130|consen 202 GNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSL 281 (639)
T ss_pred CceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHh
Confidence 55677788999999999999999999999998899999999999876 99999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 126 AEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 126 g~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
|+.|.- +.++++||.|+++-+.|.++.++.......+..||+.+..+|..++|+.+.+
T Consensus 282 gNtytl-l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 282 GNTYTL-LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999998 6999999999999999999988888888888899999999999999998764
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.37 E-value=3.9e-11 Score=104.72 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=107.7
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHH
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPA 96 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~ 96 (186)
..|++++|+..|.++ |.++...|++++|+.+|.+++++ +|.. ...+..+|.+|... +++
T Consensus 343 ~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~-~~~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSED-PDIYYHRAQLHFIKGEFA 416 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHcCCHH
Confidence 457888888888777 45677788888898888888776 3333 34566788888766 899
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCH
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHL 176 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~ 176 (186)
+|+.+|++++++.... ...+..+|.++.. +|++++|+..|++++.+++.. ..++..+|.++...|++
T Consensus 417 ~A~~~~~kal~l~P~~------~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 417 QAGKDYQKSIDLDPDF------IFSHIQLGVTQYK-EGSIASSMATFRRCKKNFPEA------PDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHHHHHHHHHcCccC------HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHccCH
Confidence 9999999998876543 2357789999998 499999999999999987654 36788899999999999
Q ss_pred HHHHHHHHh
Q psy5288 177 DKAIKLYEQ 185 (186)
Q Consensus 177 ~~A~~~~~~ 185 (186)
++|++.|++
T Consensus 484 ~~A~~~~~~ 492 (615)
T TIGR00990 484 DEAIEKFDT 492 (615)
T ss_pred HHHHHHHHH
Confidence 999999876
No 14
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.37 E-value=1e-10 Score=90.00 Aligned_cols=165 Identities=16% Similarity=0.135 Sum_probs=121.9
Q ss_pred chHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH-----------------HHHHHhcCCHHHHHHHHHH
Q psy5288 3 DNEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA-----------------GNLFKLGKKWNDGGNAFLQ 65 (186)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a-----------------g~~~~~~g~~~~A~~~y~~ 65 (186)
.++..++.++..|...+. .+++++|+..|.++ |.++...|++++|+..|.+
T Consensus 28 ~~~~~~~~~~~~g~~~~~------------~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~ 95 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALD------------SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADR 95 (235)
T ss_pred cccCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 345667777777777666 24777777777655 5678889999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHcCChhHHH-----------HHHHHH
Q psy5288 66 AGTLHLKNNNKHDAGLCFVDAANCYKKS---------NPAEAIKAIERAVEIHTDMGRFIMVA-----------KHHENI 125 (186)
Q Consensus 66 a~~~~~~~~~~~~aa~~~~~a~~~y~~~---------~~~~A~~~~~~Al~i~~~~~~~~~~a-----------~~~~~l 125 (186)
+++.+... ......+..+|.++... ++++|++.++++++.++.......+- .....+
T Consensus 96 ~l~~~p~~---~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~ 172 (235)
T TIGR03302 96 FIRLHPNH---PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYV 172 (235)
T ss_pred HHHHCcCC---CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99875321 22233566777777542 57889999999988776654332221 123478
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 126 AEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 126 g~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
|.+|..+ |++++|+..|++++..+++.. .....+..+|.+|..+|++++|+.+++.+
T Consensus 173 a~~~~~~-g~~~~A~~~~~~al~~~p~~~---~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 173 ARFYLKR-GAYVAAINRFETVVENYPDTP---ATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHc-CChHHHHHHHHHHHHHCCCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8889985 999999999999999987642 23478899999999999999999998753
No 15
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=1.7e-10 Score=86.81 Aligned_cols=135 Identities=18% Similarity=0.153 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHH
Q psy5288 34 NKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEA 98 (186)
Q Consensus 34 ~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A 98 (186)
+++++|.+.+.++ |.++...|++++|.+.|.+++++. +. ....+.++|.++... ++++|
T Consensus 45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~-~~~~~~~~~~~~~~~g~~~~A 118 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-----PN-NGDVLNNYGTFLCQQGKYEQA 118 (234)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC-CHHHHHHHHHHHHHcccHHHH
Confidence 4666666666655 456777778888888887777752 21 123455667777655 77888
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHH
Q psy5288 99 IKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDK 178 (186)
Q Consensus 99 ~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~ 178 (186)
+..++++++.. ........+..+|.++... |++++|+.++++++...+.. ...+..+|.++...|++++
T Consensus 119 ~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 119 MQQFEQAIEDP----LYPQPARSLENAGLCALKA-GDFDKAEKYLTRALQIDPQR------PESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHHHHHhcc----ccccchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCC------hHHHHHHHHHHHHcCCHHH
Confidence 88888777532 1222344567778888874 88888888888888775542 2456778888888888888
Q ss_pred HHHHHHh
Q psy5288 179 AIKLYEQ 185 (186)
Q Consensus 179 A~~~~~~ 185 (186)
|+.++++
T Consensus 188 A~~~~~~ 194 (234)
T TIGR02521 188 ARAYLER 194 (234)
T ss_pred HHHHHHH
Confidence 8887765
No 16
>KOG1155|consensus
Probab=99.35 E-value=2e-11 Score=100.03 Aligned_cols=134 Identities=22% Similarity=0.292 Sum_probs=112.2
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHH
Q psy5288 33 GNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAE 97 (186)
Q Consensus 33 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~ 97 (186)
++++++|+.+|.+| |--|..+.+-..|+++|.+|.++ +|.. -.++.-+|+.|..+ .+.=
T Consensus 343 r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-----~p~D-yRAWYGLGQaYeim~Mh~Y 416 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-----NPRD-YRAWYGLGQAYEIMKMHFY 416 (559)
T ss_pred HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-----Cchh-HHHHhhhhHHHHHhcchHH
Confidence 36788999999988 44588899999999999999998 3433 24577899999887 7888
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHH
Q psy5288 98 AIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLD 177 (186)
Q Consensus 98 A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~ 177 (186)
|+-+|++|..+-+... ..++-||.||++ +++.++||.+|.+|+..-..+ +..+..||.+|.++++++
T Consensus 417 aLyYfqkA~~~kPnDs------Rlw~aLG~CY~k-l~~~~eAiKCykrai~~~dte------~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 417 ALYYFQKALELKPNDS------RLWVALGECYEK-LNRLEEAIKCYKRAILLGDTE------GSALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHHHHHHhcCCCch------HHHHHHHHHHHH-hccHHHHHHHHHHHHhccccc------hHHHHHHHHHHHHHHhHH
Confidence 9999999987755443 378889999998 799999999999999975443 478999999999999999
Q ss_pred HHHHHHHh
Q psy5288 178 KAIKLYEQ 185 (186)
Q Consensus 178 ~A~~~~~~ 185 (186)
+|..+|++
T Consensus 484 eAa~~yek 491 (559)
T KOG1155|consen 484 EAAQYYEK 491 (559)
T ss_pred HHHHHHHH
Confidence 99999975
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.33 E-value=6.8e-11 Score=103.17 Aligned_cols=141 Identities=14% Similarity=0.103 Sum_probs=105.9
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHH
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPA 96 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~ 96 (186)
..|++++|+.+|.++ |.++..+|++++|+..|.+++.+. |. ....+..+|.++... +++
T Consensus 411 ~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----P~-~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-----PE-APDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC-ChHHHHHHHHHHHHccCHH
Confidence 457788888877777 456677788888888888877753 22 245566788888776 899
Q ss_pred HHHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccC
Q psy5288 97 EAIKAIERAVEIHTDMGRF-IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDH 175 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~-~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~ 175 (186)
+|+.+|++|+++....... ......+...+.++... |++++|+.+|++|+.+.++. ..++..+|.++..+|+
T Consensus 485 ~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~-~~~~eA~~~~~kAl~l~p~~------~~a~~~la~~~~~~g~ 557 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK-QDFIEAENLCEKALIIDPEC------DIAVATMAQLLLQQGD 557 (615)
T ss_pred HHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHccC
Confidence 9999999999987654332 23333445555566654 99999999999999985533 2478899999999999
Q ss_pred HHHHHHHHHh
Q psy5288 176 LDKAIKLYEQ 185 (186)
Q Consensus 176 ~~~A~~~~~~ 185 (186)
+++|+++|++
T Consensus 558 ~~eAi~~~e~ 567 (615)
T TIGR00990 558 VDEALKLFER 567 (615)
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 18
>KOG1126|consensus
Probab=99.27 E-value=8.1e-12 Score=105.69 Aligned_cols=127 Identities=22% Similarity=0.211 Sum_probs=86.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHH-------HcCChh-------HHH--------------HHHHHHHHHHhcC-CHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHL-------KNNNKH-------DAG--------------LCFVDAANCYKKS-NPAE 97 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~-------~~~~~~-------~aa--------------~~~~~a~~~y~~~-~~~~ 97 (186)
|++|..+++++.|+.||++|+.+-. -+|... .+. .+|.-+|.+|.+. +++.
T Consensus 428 GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~ 507 (638)
T KOG1126|consen 428 GNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEF 507 (638)
T ss_pred cchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhH
Confidence 6778888888888888888887733 122221 122 2333345666655 6777
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHH
Q psy5288 98 AIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLD 177 (186)
Q Consensus 98 A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~ 177 (186)
|.-+|++|++|...+-- +..-+|.+++. +|+.|+|+.+|++|+.+.+++. -+..+.|.++..+++|+
T Consensus 508 Ae~~fqkA~~INP~nsv------i~~~~g~~~~~-~k~~d~AL~~~~~A~~ld~kn~------l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 508 AEFHFQKAVEINPSNSV------ILCHIGRIQHQ-LKRKDKALQLYEKAIHLDPKNP------LCKYHRASILFSLGRYV 574 (638)
T ss_pred HHHHHHhhhcCCccchh------HHhhhhHHHHH-hhhhhHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhhcchH
Confidence 88888888777655532 55567888777 4888888888888888766542 46677788888888888
Q ss_pred HHHHHHHhC
Q psy5288 178 KAIKLYEQL 186 (186)
Q Consensus 178 ~A~~~~~~~ 186 (186)
+|+..++++
T Consensus 575 eal~~LEeL 583 (638)
T KOG1126|consen 575 EALQELEEL 583 (638)
T ss_pred HHHHHHHHH
Confidence 888877753
No 19
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=3e-10 Score=85.82 Aligned_cols=135 Identities=13% Similarity=0.141 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~ 112 (186)
-+..++.+...+.|.-|...|++..|...+++++++ +|... .++.-.+.+|.+. +.+.|-+.|++|+.+....
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~-----DPs~~-~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~ 102 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH-----DPSYY-LAHLVRAHYYQKLGENDLADESYRKALSLAPNN 102 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcccH-HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc
Confidence 467899999999999999999999999999999998 45443 3455778888877 8899999999999999888
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 113 GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 113 ~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
|+ +++|-|.-+-.+ |+|++|..+|++|+.- + .......++.|+|.|-.+.|+++.|.++|++
T Consensus 103 Gd------VLNNYG~FLC~q-g~~~eA~q~F~~Al~~-P---~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 103 GD------VLNNYGAFLCAQ-GRPEEAMQQFERALAD-P---AYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred cc------hhhhhhHHHHhC-CChHHHHHHHHHHHhC-C---CCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 88 888888888886 8999999999998873 2 2233357888999999999999999888875
No 20
>KOG2003|consensus
Probab=99.22 E-value=2.6e-10 Score=93.73 Aligned_cols=143 Identities=23% Similarity=0.287 Sum_probs=102.5
Q ss_pred cCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CH
Q psy5288 31 TGGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NP 95 (186)
Q Consensus 31 ~~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~ 95 (186)
|..|++++|++.|.++ |..+..+|++++|++||.+..-|. ...+..+..++.+|..+ ++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il------~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL------LNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHhhCH
Confidence 4568999999999988 345788999999999999988875 33467777999999988 89
Q ss_pred HHHHHHHHHHHHH--------------HHHcCChhHHHHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHH
Q psy5288 96 AEAIKAIERAVEI--------------HTDMGRFIMVAKHHE--------------NIAEIYEKELEDQEKAIDHYQHAA 147 (186)
Q Consensus 96 ~~A~~~~~~Al~i--------------~~~~~~~~~~a~~~~--------------~lg~~y~~~lg~~~~Ai~~y~kA~ 147 (186)
.+|++.+.++..+ |-+.|+.+++-+|+. -||..|.+. .=.++||.+|++|.
T Consensus 575 aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt-qf~ekai~y~ekaa 653 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT-QFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh-HHHHHHHHHHHHHH
Confidence 9999999887664 344455555555442 234444442 34566666666666
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 148 DCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
-+-+.. ..--..++.++++.|+|++|.+.|..+
T Consensus 654 liqp~~------~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 654 LIQPNQ------SKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred hcCccH------HHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 553321 122267899999999999999999753
No 21
>KOG1173|consensus
Probab=99.22 E-value=3.4e-10 Score=94.67 Aligned_cols=139 Identities=23% Similarity=0.249 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHH--------------HHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHh-cCCHHHH
Q psy5288 34 NKTDEAIDLYVRAGN--------------LFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYK-KSNPAEA 98 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~--------------~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~-~~~~~~A 98 (186)
+..++|..+|..|.. -|.+++++.-|-.+|.+|..|. |... ..++++|.+.- ...+.+|
T Consensus 360 ~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-----P~Dp-lv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-----PSDP-LVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred chHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-----CCcc-hhhhhhhheeehHhhhHHH
Confidence 455666666666633 3455566666666666666653 2222 23445565544 3488999
Q ss_pred HHHHHHHHHHHHHcCChh-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHH
Q psy5288 99 IKAIERAVEIHTDMGRFI-MVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLD 177 (186)
Q Consensus 99 ~~~~~~Al~i~~~~~~~~-~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~ 177 (186)
+.+|+.++...+..++.. .-.-.+.+||-+|.. ++.+++||.+|++|+.+.+++ ..++-.+|-+|..+|+++
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk-l~~~~eAI~~~q~aL~l~~k~------~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK-LNKYEEAIDYYQKALLLSPKD------ASTHASIGYIYHLLGNLD 506 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHH-HhhHHHHHHHHHHHHHcCCCc------hhHHHHHHHHHHHhcChH
Confidence 999999998777775433 245578999999999 599999999999999998765 368889999999999999
Q ss_pred HHHHHHHh
Q psy5288 178 KAIKLYEQ 185 (186)
Q Consensus 178 ~A~~~~~~ 185 (186)
+|+++|++
T Consensus 507 ~Aid~fhK 514 (611)
T KOG1173|consen 507 KAIDHFHK 514 (611)
T ss_pred HHHHHHHH
Confidence 99999986
No 22
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.22 E-value=1.7e-10 Score=73.83 Aligned_cols=73 Identities=27% Similarity=0.414 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q psy5288 78 DAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF-IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 78 ~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~-~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~ 151 (186)
..+.+|.++|.+|... ++++|+.+|++|+++....|+. ...+.++.++|.+|..+ |++++|++++++|+++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL-GDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhhc
Confidence 4577888999999887 9999999999999998778855 46799999999999995 999999999999999976
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=6.8e-10 Score=83.54 Aligned_cols=135 Identities=14% Similarity=0.147 Sum_probs=110.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~ 112 (186)
.+.+.....+...|..+...|++++|.+.+.++++. +|.. ...+..+|.+|... ++++|+..+++++++....
T Consensus 25 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 98 (234)
T TIGR02521 25 TDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH-----DPDD-YLAYLALALYYQQLGELEKAEDSFRRALTLNPNN 98 (234)
T ss_pred ccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----Cccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 455677888999999999999999999999999876 2333 35666788888876 9999999999999875433
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 113 GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 113 ~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...+.++|.++..+ |++++|+.+|++++...... .....+.++|.++...|++++|+.+|++
T Consensus 99 ------~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 99 ------GDVLNNYGTFLCQQ-GKYEQAMQQFEQAIEDPLYP----QPARSLENAGLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred ------HHHHHHHHHHHHHc-ccHHHHHHHHHHHHhccccc----cchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 24788899999995 99999999999999753211 1235678899999999999999999875
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.20 E-value=5.8e-10 Score=101.37 Aligned_cols=135 Identities=10% Similarity=0.104 Sum_probs=105.1
Q ss_pred CCCCHHHHHHHHHHHHH-----------HHHh---cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHH
Q psy5288 32 GGNKTDEAIDLYVRAGN-----------LFKL---GKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPA 96 (186)
Q Consensus 32 ~~~~~~~A~~~y~~ag~-----------~~~~---~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~ 96 (186)
..|++++|+.+|.++.. +... .|++++|+.+|.+++.+ +|. ...+.++|.++.+. +++
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-----~P~--~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI-----APS--ANAYVARATIYRQRHNVP 626 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCC--HHHHHHHHHHHHHCCCHH
Confidence 34677777777665522 1222 37777777777777776 453 45677888888877 999
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCH
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHL 176 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~ 176 (186)
+|+.+|++++.+.... +.++.++|.++... |++++|+..|++|+.+.+.. ...+.++|.++...|++
T Consensus 627 eA~~~l~~AL~l~Pd~------~~a~~nLG~aL~~~-G~~eeAi~~l~~AL~l~P~~------~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 627 AAVSDLRAALELEPNN------SNYQAALGYALWDS-GDIAQSREMLERAHKGLPDD------PALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCH
Confidence 9999999998886544 35889999999995 99999999999999997754 36889999999999999
Q ss_pred HHHHHHHHhC
Q psy5288 177 DKAIKLYEQL 186 (186)
Q Consensus 177 ~~A~~~~~~~ 186 (186)
++|+.+|+++
T Consensus 694 ~eA~~~l~~A 703 (987)
T PRK09782 694 AATQHYARLV 703 (987)
T ss_pred HHHHHHHHHH
Confidence 9999999863
No 25
>KOG1155|consensus
Probab=99.20 E-value=1.1e-09 Score=90.04 Aligned_cols=165 Identities=25% Similarity=0.295 Sum_probs=125.8
Q ss_pred HHhHHHHHHHHHHhhccCCCCccccccC-----CCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHH
Q psy5288 5 EQKARQLVAEAEKKISSSSKGFFSQFTG-----GNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQ 65 (186)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~ 65 (186)
-++|..+-+.|-|.=+ +..+-|- ++| =.+-..|++.|..| |+.|..++-+.-|+-+|++
T Consensus 346 HEKAv~YFkRALkLNp-~~~~aWT-LmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNP-KYLSAWT-LMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HHHHHHHHHHHHhcCc-chhHHHH-HhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 3677777777766544 1111111 112 14668999999999 7789999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy5288 66 AGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQ 144 (186)
Q Consensus 66 a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~ 144 (186)
|..+ .|.. ...+.-+|+||.++ +.++|+.||.+|+......|+ ++..||.+|+. ++++++|..+|+
T Consensus 424 A~~~-----kPnD-sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~------~l~~LakLye~-l~d~~eAa~~ye 490 (559)
T KOG1155|consen 424 ALEL-----KPND-SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS------ALVRLAKLYEE-LKDLNEAAQYYE 490 (559)
T ss_pred HHhc-----CCCc-hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH------HHHHHHHHHHH-HHhHHHHHHHHH
Confidence 9998 3333 45688899999998 899999999999987766555 89999999999 699999999999
Q ss_pred HHHHHHhccC--ChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 145 HAADCYAGEE--NKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 145 kA~~l~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+-++.....+ .+.. .....-|+.-+.+.++|++|-.+..+
T Consensus 491 k~v~~~~~eg~~~~~t-~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 491 KYVEVSELEGEIDDET-IKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHhhcccchHH-HHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 9999764322 2222 24445589999999999999887654
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.20 E-value=1e-09 Score=90.20 Aligned_cols=58 Identities=9% Similarity=0.088 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
.+..+|.+|... |++++|+.++++++...+. .....+..++.+|...|++++|+..++
T Consensus 216 ~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~-----~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 216 ASILLGDLALAQ-GDYAAAIEALERVEEQDPE-----YLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHHChh-----hHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344455555542 5555555555555543211 112334445555555555555555544
No 27
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.17 E-value=7.5e-10 Score=70.77 Aligned_cols=75 Identities=13% Similarity=0.318 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChh-HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKH-DAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTD 111 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~-~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~ 111 (186)
...+.+|...|.+|..+|++++|+++|++++++.+..|+.. ..+.++.++|.+|... ++++|++++++|++|+++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 46788999999999999999999999999999988888765 4699999999999987 999999999999999863
No 28
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.16 E-value=2.7e-09 Score=87.66 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+..++.+|... |++++|+..+++++...++. ..+..++.++.+.|++++|+..|++
T Consensus 251 ~~~~l~~~~~~~-g~~~~A~~~l~~~~~~~p~~-------~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 251 VLPKLMECYQAL-GDEAEGLEFLRRALEEYPGA-------DLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 445556666663 66666666666666654321 1235666666666666666666653
No 29
>KOG1126|consensus
Probab=99.14 E-value=1.7e-10 Score=97.75 Aligned_cols=119 Identities=13% Similarity=0.141 Sum_probs=91.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENI 125 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~l 125 (186)
|.+|.++++++.|.-.|++|++| +|..... ..=+|.++... +.++|+..|++|+.+-.+.-- +-+..
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~I-----NP~nsvi-~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l------~~~~~ 563 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEI-----NPSNSVI-LCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL------CKYHR 563 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcC-----CccchhH-HhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch------hHHHH
Confidence 44566666666666666666666 4443322 22456777666 889999999999877655532 66778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 126 AEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 126 g~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
|.++.. ++++++|...+++...+.+++ ..++.-+|.+|.+.|+.+.|+..|.
T Consensus 564 ~~il~~-~~~~~eal~~LEeLk~~vP~e------s~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 564 ASILFS-LGRYVEALQELEELKELVPQE------SSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred HHHHHh-hcchHHHHHHHHHHHHhCcch------HHHHHHHHHHHHHHccchHHHHhhH
Confidence 999998 699999999999999998764 4788899999999999999998874
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.12 E-value=3.8e-09 Score=93.97 Aligned_cols=124 Identities=17% Similarity=0.130 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHH---
Q psy5288 7 KARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTL--- 69 (186)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~--- 69 (186)
.+..++..|...++ .|++++|+..|.++ |.+|...|++++|+..+.++++.
T Consensus 21 ~~~~~~~~a~~~~~------------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 88 (899)
T TIGR02917 21 SPESLIEAAKSYLQ------------KNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP 88 (899)
T ss_pred CHHHHHHHHHHHHH------------cCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 55667777777777 35888888887775 66788889999998888877653
Q ss_pred -----------HHHcCC---------------hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy5288 70 -----------HLKNNN---------------KHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHH 122 (186)
Q Consensus 70 -----------~~~~~~---------------~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~ 122 (186)
+...|+ +...+..+..+|.+|... ++++|+..|++++++.... ...+
T Consensus 89 ~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~ 162 (899)
T TIGR02917 89 KNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS------LYAK 162 (899)
T ss_pred hhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhhH
Confidence 122222 223344455667777655 7888888888887653321 1133
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy5288 123 ENIAEIYEKELEDQEKAIDHYQHAADC 149 (186)
Q Consensus 123 ~~lg~~y~~~lg~~~~Ai~~y~kA~~l 149 (186)
..+|.++... |++++|+..+++++..
T Consensus 163 ~~la~~~~~~-~~~~~A~~~~~~~~~~ 188 (899)
T TIGR02917 163 LGLAQLALAE-NRFDEARALIDEVLTA 188 (899)
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHHh
Confidence 4444444442 4444444444444443
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=99.08 E-value=6.7e-09 Score=89.76 Aligned_cols=136 Identities=16% Similarity=0.067 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHH
Q psy5288 33 GNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAE 97 (186)
Q Consensus 33 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~ 97 (186)
.+++++|...+.++ |.++...|++++|+.+|.+++++ +|..+. .+..+|.++... ++++
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~~-a~~~lg~~l~~~G~~~e 390 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL-----SPISAD-IKYYYGWNLFMAGQLEE 390 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHH-HHHHHHHHHHHCCCHHH
Confidence 35688888888877 55788899999999999999998 565544 455788888776 9999
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHH
Q psy5288 98 AIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLD 177 (186)
Q Consensus 98 A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~ 177 (186)
|+.++++++++...... ....++.++... |++++|+.++++++...+.. . ...+.++|.+|..+|+++
T Consensus 391 Ai~~~~~Al~l~P~~~~------~~~~~~~~~~~~-g~~eeA~~~~~~~l~~~~p~-~----~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 391 ALQTINECLKLDPTRAA------AGITKLWITYYH-TGIDDAIRLGDELRSQHLQD-N----PILLSMQVMFLSLKGKHE 458 (553)
T ss_pred HHHHHHHHHhcCCCChh------hHHHHHHHHHhc-cCHHHHHHHHHHHHHhcccc-C----HHHHHHHHHHHHhCCCHH
Confidence 99999999988655321 222344445554 99999999999998764221 1 246788999999999999
Q ss_pred HHHHHHHhC
Q psy5288 178 KAIKLYEQL 186 (186)
Q Consensus 178 ~A~~~~~~~ 186 (186)
+|+..+.++
T Consensus 459 eA~~~~~~~ 467 (553)
T PRK12370 459 LARKLTKEI 467 (553)
T ss_pred HHHHHHHHh
Confidence 999998763
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.07 E-value=8e-09 Score=96.14 Aligned_cols=148 Identities=16% Similarity=0.089 Sum_probs=107.9
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHH--------------------------
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHL-------------------------- 71 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~-------------------------- 71 (186)
..+++++|+..|.++ |.++...|++++|+.+|.+++++..
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 457888888888887 5678888999999999988887532
Q ss_pred --HcCChhHHHH--------------HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC-------------ChhHH---
Q psy5288 72 --KNNNKHDAGL--------------CFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG-------------RFIMV--- 118 (186)
Q Consensus 72 --~~~~~~~aa~--------------~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~-------------~~~~~--- 118 (186)
..|++..+.. .+..+|.+|... ++++|+++|++++++..... +...+
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 1223333322 344567777766 89999999999997643221 11111
Q ss_pred --------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHH
Q psy5288 119 --------------------AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDK 178 (186)
Q Consensus 119 --------------------a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~ 178 (186)
...+..+|.++... |++++|+.+|++++.+.+.. ...+..+|.+|...|++++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~-g~~~eA~~~~~~Al~~~P~~------~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQ-GKWAQAAELQRQRLALDPGS------VWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHH
Confidence 12234567788885 99999999999999997754 2577899999999999999
Q ss_pred HHHHHHhC
Q psy5288 179 AIKLYEQL 186 (186)
Q Consensus 179 A~~~~~~~ 186 (186)
|+..|+++
T Consensus 514 A~~~l~~a 521 (1157)
T PRK11447 514 ADALMRRL 521 (1157)
T ss_pred HHHHHHHH
Confidence 99999763
No 33
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.07 E-value=1.8e-09 Score=77.40 Aligned_cols=111 Identities=9% Similarity=-0.028 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy5288 43 YVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKH 121 (186)
Q Consensus 43 y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~ 121 (186)
+...|.++...|++++|+.+|.+++.+ +|.. ...+..+|.++... ++++|+.+|++++.+.... +..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~-~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~------~~a 94 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA-----QPWS-WRAHIALAGTWMMLKEYTTAINFYGHALMLDASH------PEP 94 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------cHH
Confidence 566677888888888888888888776 3443 45566777777766 8888888888888765444 337
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSAL 172 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~ 172 (186)
+.++|.++.. +|++++|+..|++|+.+.+.. ...+.+.+.+...
T Consensus 95 ~~~lg~~l~~-~g~~~eAi~~~~~Al~~~p~~------~~~~~~~~~~~~~ 138 (144)
T PRK15359 95 VYQTGVCLKM-MGEPGLAREAFQTAIKMSYAD------ASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHH
Confidence 8888888888 488888888888888886654 2455556655543
No 34
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=2.4e-08 Score=79.79 Aligned_cols=140 Identities=12% Similarity=0.066 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHH
Q psy5288 33 GNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAE 97 (186)
Q Consensus 33 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~ 97 (186)
.|++++|...|.++ |.++...|++++|+..|.+++++ +|... ..+.+.|.++... ++++
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~-~a~~~lg~~l~~~g~~~e 150 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTYN-YAYLNRGIALYYGGRYEL 150 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-HHHHHHHHHHHHCCCHHH
Confidence 35667776666665 55677778888888888888776 34433 3455677776655 7888
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-----------CC-----------
Q psy5288 98 AIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE-----------EN----------- 155 (186)
Q Consensus 98 A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~-----------~~----------- 155 (186)
|++.+++++.+.+... . ...+. .+.... +++++|+..+.+++...... +.
T Consensus 151 A~~~~~~al~~~P~~~--~--~~~~~---~l~~~~-~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~ 222 (296)
T PRK11189 151 AQDDLLAFYQDDPNDP--Y--RALWL---YLAESK-LDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLK 222 (296)
T ss_pred HHHHHHHHHHhCCCCH--H--HHHHH---HHHHcc-CCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHH
Confidence 8888888776543321 0 00111 122222 55666666665444321100 00
Q ss_pred ---------hHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 156 ---------KSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 156 ---------~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
.......|.++|.+|..+|++++|+.+|+++
T Consensus 223 ~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 223 AGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 0011247889999999999999999999863
No 35
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.07 E-value=1e-08 Score=78.81 Aligned_cols=146 Identities=16% Similarity=0.080 Sum_probs=112.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~ 112 (186)
+..+...+.+...|..+...|++++|+..|.+++..... .......+..+|.+|... ++++|+..|+++++.+...
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 103 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF---SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH 103 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 466788888999999999999999999999999887421 112345577889999877 9999999999999888754
Q ss_pred CChhHHHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHHHhccCChHHHH-----------HHHHHHHHHHHhcc
Q psy5288 113 GRFIMVAKHHENIAEIYEKE-------LEDQEKAIDHYQHAADCYAGEENKSSAN-----------KCLIKIANYSALTD 174 (186)
Q Consensus 113 ~~~~~~a~~~~~lg~~y~~~-------lg~~~~Ai~~y~kA~~l~~~~~~~~~~~-----------~~~~~la~~y~~~g 174 (186)
.. +...+..+|.++... .|++++|+..|++++..+++........ .....+|.+|...|
T Consensus 104 ~~---~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 104 PD---ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG 180 (235)
T ss_pred Cc---hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 43 334677888887752 1789999999999999988753221111 12247899999999
Q ss_pred CHHHHHHHHHh
Q psy5288 175 HLDKAIKLYEQ 185 (186)
Q Consensus 175 ~~~~A~~~~~~ 185 (186)
++.+|+..|++
T Consensus 181 ~~~~A~~~~~~ 191 (235)
T TIGR03302 181 AYVAAINRFET 191 (235)
T ss_pred ChHHHHHHHHH
Confidence 99999999875
No 36
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.06 E-value=5.1e-09 Score=93.15 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=87.9
Q ss_pred CCCCHHHHHHHHHHH-------------HHHHHhcCCHHHHHHHHHHHHHHH--------------HHcCChhHH-----
Q psy5288 32 GGNKTDEAIDLYVRA-------------GNLFKLGKKWNDGGNAFLQAGTLH--------------LKNNNKHDA----- 79 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a-------------g~~~~~~g~~~~A~~~y~~a~~~~--------------~~~~~~~~a----- 79 (186)
..|++++|+..|.++ +.++...|++++|.+.+.++++.. ...|+...+
T Consensus 715 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred HCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 346666666666653 556666666666666665555431 111111111
Q ss_pred ---------HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy5288 80 ---------GLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADC 149 (186)
Q Consensus 80 ---------a~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l 149 (186)
...+..++.++... + .+|+..+++++.+.... ..++..+|.++... |++++|+.+|++++++
T Consensus 795 ~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 795 TVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNI------PAILDTLGWLLVEK-GEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Confidence 12223334444433 3 44555555555442211 22456788888884 9999999999999998
Q ss_pred HhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 150 YAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 150 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
.+.. ..++.+++.+|.+.|++++|+++++++
T Consensus 867 ~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 867 APEA------AAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred CCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6642 368888999999999999999999874
No 37
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=9.9e-09 Score=82.04 Aligned_cols=129 Identities=15% Similarity=0.009 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF 115 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~ 115 (186)
+.-...|...|.+|...|++++|...|.+++++ +|.. ...|..+|.+|... ++++|+..|++++++....
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-----~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~--- 131 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALAL-----RPDM-ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--- 131 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---
Confidence 444567888899999999999999999999997 4443 46778999999877 9999999999999886554
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...+.++|.++... |++++|+..+++++.+.++.. . ...|. .+....+++++|+..|.+
T Consensus 132 ---~~a~~~lg~~l~~~-g~~~eA~~~~~~al~~~P~~~--~--~~~~~---~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 132 ---NYAYLNRGIALYYG-GRYELAQDDLLAFYQDDPNDP--Y--RALWL---YLAESKLDPKQAKENLKQ 190 (296)
T ss_pred ---HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCH--H--HHHHH---HHHHccCCHHHHHHHHHH
Confidence 33789999999985 999999999999999876542 1 11222 234567889999998854
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.05 E-value=1.4e-08 Score=80.27 Aligned_cols=124 Identities=17% Similarity=0.157 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy5288 44 VRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHH 122 (186)
Q Consensus 44 ~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~ 122 (186)
...|.++...|++++|+.+|.+++++ +|.... ....++.++... +.+++...+............ .+
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~-~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~------~~ 217 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALEL-----DPDDPD-ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD------LW 217 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HH-HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC------HC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHH-HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH------HH
Confidence 33367788899999999999999888 354332 333566666655 667766666555554444433 56
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 123 ENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 123 ~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
..+|.+|.. +|++++|+.+|++++...+++ ...+.++|.++...|++++|..++.++
T Consensus 218 ~~la~~~~~-lg~~~~Al~~~~~~~~~~p~d------~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 218 DALAAAYLQ-LGRYEEALEYLEKALKLNPDD------PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHH-HT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHT---------------
T ss_pred HHHHHHhcc-ccccccccccccccccccccc------ccccccccccccccccccccccccccc
Confidence 778999998 699999999999999976653 367789999999999999999988764
No 39
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.05 E-value=3.7e-09 Score=93.02 Aligned_cols=134 Identities=14% Similarity=0.015 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHHH---------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CH
Q psy5288 32 GGNKTDEAIDLYVRA---------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NP 95 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a---------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~ 95 (186)
..|++++|++.+.++ +.++...|++++|+..|.+++.+. +.. ...+..+|.+|... ++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-----p~~-~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-----LDG-AALRRSLGLAYYQSGRS 262 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCC-HHHHHHHHHHHHHcCCc
Confidence 345666666655542 334555666666666666665541 111 22333444444433 33
Q ss_pred HH----HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Q psy5288 96 AE----AIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSA 171 (186)
Q Consensus 96 ~~----A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~ 171 (186)
++ |+..|++++.+.... +.++..+|.++..+ |++++|+.++++++.+.+.. ..++.++|.+|.
T Consensus 263 ~eA~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~-g~~~eA~~~l~~al~l~P~~------~~a~~~La~~l~ 329 (656)
T PRK15174 263 REAKLQAAEHWRHALQFNSDN------VRIVTLYADALIRT-GQNEKAIPLLQQSLATHPDL------PYVRAMYARALR 329 (656)
T ss_pred hhhHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Confidence 32 455555554443211 22444445554442 45555555555554443321 123344444444
Q ss_pred hccCHHHHHHHHH
Q psy5288 172 LTDHLDKAIKLYE 184 (186)
Q Consensus 172 ~~g~~~~A~~~~~ 184 (186)
..|++++|+..|+
T Consensus 330 ~~G~~~eA~~~l~ 342 (656)
T PRK15174 330 QVGQYTAASDEFV 342 (656)
T ss_pred HCCCHHHHHHHHH
Confidence 4444444444443
No 40
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.01 E-value=8.4e-09 Score=90.78 Aligned_cols=135 Identities=16% Similarity=0.119 Sum_probs=110.2
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHH----HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWND----GGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS 93 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~----A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~ 93 (186)
..+++++|+..|.++ |.++...|++++ |...|.+++.+ +|.. ...+..+|.++...
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~-~~a~~~lg~~l~~~ 297 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDN-VRIVTLYADALIRT 297 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCC-HHHHHHHHHHHHHC
Confidence 468999999998876 667888999986 89999999987 4543 45667888888876
Q ss_pred -CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh
Q psy5288 94 -NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSAL 172 (186)
Q Consensus 94 -~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~ 172 (186)
++++|+.++++++.+.... +.++..+|.+|.. +|++++|+..|++++...+.. ...+..+|.++..
T Consensus 298 g~~~eA~~~l~~al~l~P~~------~~a~~~La~~l~~-~G~~~eA~~~l~~al~~~P~~------~~~~~~~a~al~~ 364 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDL------PYVRAMYARALRQ-VGQYTAASDEFVQLAREKGVT------SKWNRYAAAALLQ 364 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHH
Confidence 9999999999999875443 3467789999999 499999999999999975532 1345567899999
Q ss_pred ccCHHHHHHHHHh
Q psy5288 173 TDHLDKAIKLYEQ 185 (186)
Q Consensus 173 ~g~~~~A~~~~~~ 185 (186)
.|++++|+..|++
T Consensus 365 ~G~~deA~~~l~~ 377 (656)
T PRK15174 365 AGKTSEAESVFEH 377 (656)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999976
No 41
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.01 E-value=1e-08 Score=73.43 Aligned_cols=103 Identities=13% Similarity=0.089 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHH
Q psy5288 61 NAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKA 139 (186)
Q Consensus 61 ~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~A 139 (186)
.++.+++++ +|.. +...|.++... ++++|+.+|++++.+.... ..++..+|.++.. +|++++|
T Consensus 14 ~~~~~al~~-----~p~~----~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~-~g~~~~A 77 (144)
T PRK15359 14 DILKQLLSV-----DPET----VYASGYASWQEGDYSRAVIDFSWLVMAQPWS------WRAHIALAGTWMM-LKEYTTA 77 (144)
T ss_pred HHHHHHHHc-----CHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHH-HhhHHHH
Confidence 466777777 4543 33456665544 9999999999998775444 4588999999999 5999999
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 140 IDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 140 i~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+.+|++|+.+.+.. ...+.++|.++..+|++++|++.|++
T Consensus 78 ~~~y~~Al~l~p~~------~~a~~~lg~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 78 INFYGHALMLDASH------PEPVYQTGVCLKMMGEPGLAREAFQT 117 (144)
T ss_pred HHHHHHHHhcCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999987654 37889999999999999999999976
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.99 E-value=2.4e-08 Score=79.02 Aligned_cols=148 Identities=18% Similarity=0.167 Sum_probs=98.0
Q ss_pred cCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHH-----------HHHcCC----------
Q psy5288 31 TGGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTL-----------HLKNNN---------- 75 (186)
Q Consensus 31 ~~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~-----------~~~~~~---------- 75 (186)
+-+.+.++|++.|... |++|+..|..+.|+...+-..+. .+.+|.
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3567888888888876 77888888888888776422221 111222
Q ss_pred -----------hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5288 76 -----------KHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHY 143 (186)
Q Consensus 76 -----------~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y 143 (186)
++.+-.+...+..+|... ++.+|++..++-+.+-.+. ....+|..+-+++..+... .+.+.|+.++
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~-~~~eIAqfyCELAq~~~~~-~~~d~A~~~l 203 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT-YRVEIAQFYCELAQQALAS-SDVDRARELL 203 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc-chhHHHHHHHHHHHHHhhh-hhHHHHHHHH
Confidence 222333333344444443 4555555544433332222 2356788888888888876 8999999999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 144 QHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 144 ~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
.+|+...++.- ..-+-+|.++...|+|++|++.+++|
T Consensus 204 ~kAlqa~~~cv------RAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 204 KKALQADKKCV------RASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred HHHHhhCccce------ehhhhhhHHHHhccchHHHHHHHHHH
Confidence 99999876542 44577899999999999999998764
No 43
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.98 E-value=3.3e-08 Score=92.09 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=111.4
Q ss_pred CCCCHHHHHHHHH----------HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHH
Q psy5288 32 GGNKTDEAIDLYV----------RAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIK 100 (186)
Q Consensus 32 ~~~~~~~A~~~y~----------~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~ 100 (186)
..|++++|+.++. ..|.++...|++++|+.+|.+++.+ +|.. ...+..++.+|... ++++|+.
T Consensus 585 ~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-----~P~~-~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-----EPGN-ADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHCCCHHHHHH
Confidence 3467888877765 3588899999999999999999997 4443 34567889999877 9999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHH
Q psy5288 101 AIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAI 180 (186)
Q Consensus 101 ~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~ 180 (186)
++++++...... ...+..+|.++.. +|++++|+.+|++++...++.........++..+|.++...|++++|+
T Consensus 659 ~l~~ll~~~p~~------~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 659 QLAKLPATANDS------LNTQRRVALAWAA-LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred HHHHHhccCCCC------hHHHHHHHHHHHh-CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 999876543222 3467789999998 499999999999999987654322223457788999999999999999
Q ss_pred HHHHh
Q psy5288 181 KLYEQ 185 (186)
Q Consensus 181 ~~~~~ 185 (186)
..|++
T Consensus 732 ~~y~~ 736 (1157)
T PRK11447 732 ETYKD 736 (1157)
T ss_pred HHHHH
Confidence 99976
No 44
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.98 E-value=1.9e-08 Score=76.16 Aligned_cols=137 Identities=15% Similarity=0.106 Sum_probs=113.2
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH-hcCCHH
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCY-KKSNPA 96 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y-~~~~~~ 96 (186)
..|++..|...++++ +.+|...|..+.|-+.|.+|+++..+.| ..++|-|-.. ...+|+
T Consensus 47 ~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G------dVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG------DVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc------chhhhhhHHHHhCCChH
Confidence 347889999888888 4479999999999999999999854443 4555655443 444999
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCH
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHL 176 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~ 176 (186)
+|...|++|+. .-.+...+..+.|+|.|-... |+.++|.++|++++++.++.. .....++....+.|+|
T Consensus 121 eA~q~F~~Al~----~P~Y~~~s~t~eN~G~Cal~~-gq~~~A~~~l~raL~~dp~~~------~~~l~~a~~~~~~~~y 189 (250)
T COG3063 121 EAMQQFERALA----DPAYGEPSDTLENLGLCALKA-GQFDQAEEYLKRALELDPQFP------PALLELARLHYKAGDY 189 (250)
T ss_pred HHHHHHHHHHh----CCCCCCcchhhhhhHHHHhhc-CCchhHHHHHHHHHHhCcCCC------hHHHHHHHHHHhcccc
Confidence 99999999863 445667788999999999996 999999999999999987653 5678899999999999
Q ss_pred HHHHHHHHh
Q psy5288 177 DKAIKLYEQ 185 (186)
Q Consensus 177 ~~A~~~~~~ 185 (186)
..|.-++++
T Consensus 190 ~~Ar~~~~~ 198 (250)
T COG3063 190 APARLYLER 198 (250)
T ss_pred hHHHHHHHH
Confidence 999998875
No 45
>KOG2003|consensus
Probab=98.96 E-value=9.3e-09 Score=84.74 Aligned_cols=116 Identities=19% Similarity=0.175 Sum_probs=94.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy5288 49 LFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAE 127 (186)
Q Consensus 49 ~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~ 127 (186)
+-...|++++|+++|..++. +-.....++.++|..+..+ +.++|+.||-+.--|+... +.+++.++.
T Consensus 499 ~~f~ngd~dka~~~ykeal~------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn------~evl~qian 566 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALN------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN------AEVLVQIAN 566 (840)
T ss_pred eeeecCcHHHHHHHHHHHHc------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh------HHHHHHHHH
Confidence 33456788999998888876 4556677888999999988 9999999998766665444 668999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 128 IYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 128 ~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
+|+. +.+..+||++|.++..+.+.. ..++.+||.+|-+.|+-.+|.+++
T Consensus 567 iye~-led~aqaie~~~q~~slip~d------p~ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 567 IYEL-LEDPAQAIELLMQANSLIPND------PAILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred HHHH-hhCHHHHHHHHHHhcccCCCC------HHHHHHHHHHhhcccchhhhhhhh
Confidence 9999 699999999999999987754 367888899988888888887765
No 46
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.96 E-value=2.7e-07 Score=66.06 Aligned_cols=136 Identities=15% Similarity=0.108 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG 113 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~ 113 (186)
+-+++...|..+...+. .++...+...+....+- .++...+......++.++... ++++|+..|++++.-. .
T Consensus 7 ~~~~a~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~---~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~ 79 (145)
T PF09976_consen 7 QAEQASALYEQALQALQ-AGDPAKAEAAAEQLAKD---YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---P 79 (145)
T ss_pred HHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---C
Confidence 44678888888877774 78888876655555553 333334555566777777665 9999999999987733 4
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 114 RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 114 ~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++.....+...+|.++..+ |++++|+..++.. ..+.+....+..+|.+|.+.|++++|+..|++
T Consensus 80 d~~l~~~a~l~LA~~~~~~-~~~d~Al~~L~~~-------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 80 DPELKPLARLRLARILLQQ-GQYDEALATLQQI-------PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHhc-------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5566677888999999995 9999999998661 12233456778899999999999999999986
No 47
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.95 E-value=2.9e-08 Score=72.74 Aligned_cols=116 Identities=14% Similarity=0.100 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q psy5288 33 GNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTD 111 (186)
Q Consensus 33 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~ 111 (186)
...-+..+.++...|..+...|++++|+.+|.+++.+. .++...+..+.++|.+|... ++++|+.+|++|+.+...
T Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~---~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 28 TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE---IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 34556778889999999999999999999999999883 23334456888999999987 999999999999998654
Q ss_pred cCC-hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 112 MGR-FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 112 ~~~-~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
.+. ....+.++..+|..+.. +|+++.|+..+.+|+.++++
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~-~g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIE-QGDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHH-cccHHHHHHHHHHHHHHHHH
Confidence 432 23444555555555557 49999999999888888776
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=98.95 E-value=2.6e-08 Score=86.16 Aligned_cols=112 Identities=10% Similarity=-0.044 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc
Q psy5288 55 KWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKEL 133 (186)
Q Consensus 55 ~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~l 133 (186)
++++|...+.+++++ +|... .++..+|.++... ++++|+.+|++|+++.... +..+..+|.++...
T Consensus 319 ~~~~A~~~~~~Al~l-----dP~~~-~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~- 385 (553)
T PRK12370 319 AMIKAKEHAIKATEL-----DHNNP-QALGLLGLINTIHSEYIVGSLLFKQANLLSPIS------ADIKYYYGWNLFMA- 385 (553)
T ss_pred HHHHHHHHHHHHHhc-----CCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC-
Confidence 366777777777666 34433 3344566666554 7777777777777664333 23567777777774
Q ss_pred CCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 134 EDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 134 g~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
|++++|+.++++|+.+.+... .....++.++...|++++|+..+++
T Consensus 386 G~~~eAi~~~~~Al~l~P~~~------~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 386 GQLEEALQTINECLKLDPTRA------AAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred CCHHHHHHHHHHHHhcCCCCh------hhHHHHHHHHHhccCHHHHHHHHHH
Confidence 888888888888877755421 1223344455667778878777654
No 49
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.92 E-value=2.1e-08 Score=75.67 Aligned_cols=114 Identities=14% Similarity=0.133 Sum_probs=72.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH-H
Q psy5288 53 GKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIY-E 130 (186)
Q Consensus 53 ~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y-~ 130 (186)
.++.++++..+.+++.. +|.. ...+..+|.+|... ++++|+.+|++|+.+.... +.++..+|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~-----~P~~-~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-----NPQN-SEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN------AELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHH-----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 44556666666666655 3333 33566777777665 7777777777777766544 33566677653 4
Q ss_pred HhcCC--HHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 131 KELED--QEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 131 ~~lg~--~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
. .|+ +++|+..+++++.+.++. ..++.++|.++...|+|++|+.++++
T Consensus 120 ~-~g~~~~~~A~~~l~~al~~dP~~------~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 120 Q-AGQHMTPQTREMIDKALALDANE------VTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred h-cCCCCcHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 255 477777777777776543 25667777777777777777777765
No 50
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.91 E-value=3.1e-08 Score=90.33 Aligned_cols=133 Identities=11% Similarity=0.052 Sum_probs=113.3
Q ss_pred CCHHHHHHHHHHH-------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHH
Q psy5288 34 NKTDEAIDLYVRA-------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAI 99 (186)
Q Consensus 34 ~~~~~A~~~y~~a-------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~ 99 (186)
|++++|+..|.++ |.++...|++++|+.+|.+++.+ +|... ..+.++|.++... ++++|+
T Consensus 590 Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~-~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNS-NYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-HHHHHHHHHHHHCCCHHHHH
Confidence 7999999888777 56788999999999999999998 55555 5677899888776 999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHH
Q psy5288 100 KAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKA 179 (186)
Q Consensus 100 ~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A 179 (186)
.+|++|+++.... +.++.++|.++.. +|++++|+.+|++|+++.++. ..+....|.+.....++..|
T Consensus 664 ~~l~~AL~l~P~~------~~a~~nLA~al~~-lGd~~eA~~~l~~Al~l~P~~------a~i~~~~g~~~~~~~~~~~a 730 (987)
T PRK09782 664 EMLERAHKGLPDD------PALIRQLAYVNQR-LDDMAATQHYARLVIDDIDNQ------ALITPLTPEQNQQRFNFRRL 730 (987)
T ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCC------chhhhhhhHHHHHHHHHHHH
Confidence 9999999886544 4589999999999 599999999999999997654 35667889999999999999
Q ss_pred HHHHHh
Q psy5288 180 IKLYEQ 185 (186)
Q Consensus 180 ~~~~~~ 185 (186)
.+.+.+
T Consensus 731 ~~~~~r 736 (987)
T PRK09782 731 HEEVGR 736 (987)
T ss_pred HHHHHH
Confidence 998765
No 51
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=5.8e-08 Score=85.55 Aligned_cols=160 Identities=11% Similarity=0.048 Sum_probs=121.4
Q ss_pred HHhHHHHHHHHHHhhccCCCCccc-------ccc-CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCh
Q psy5288 5 EQKARQLVAEAEKKISSSSKGFFS-------QFT-GGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNK 76 (186)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~-------~~~-~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~ 76 (186)
++-+.++.++++..++ . ++-+. ++. -..+|..-.+.+..++.+-...|.+++|...+..++++ .|
T Consensus 45 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-----~P 117 (694)
T PRK15179 45 EEAGRELLQQARQVLE-R-HAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-----FP 117 (694)
T ss_pred hhHHHHHHHHHHHHHH-H-hhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-----CC
Confidence 4566888999988887 2 22110 000 00233444566777788899999999999999999998 56
Q ss_pred hHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q psy5288 77 HDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEEN 155 (186)
Q Consensus 77 ~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~ 155 (186)
+...... ..+.+..+. ++++|+..+++++....+. +..+..+|.++.. +|++++|+.+|++++.-.+ +.
T Consensus 118 d~~~a~~-~~a~~L~~~~~~eeA~~~~~~~l~~~p~~------~~~~~~~a~~l~~-~g~~~~A~~~y~~~~~~~p--~~ 187 (694)
T PRK15179 118 DSSEAFI-LMLRGVKRQQGIEAGRAEIELYFSGGSSS------AREILLEAKSWDE-IGQSEQADACFERLSRQHP--EF 187 (694)
T ss_pred CcHHHHH-HHHHHHHHhccHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHH-hcchHHHHHHHHHHHhcCC--Cc
Confidence 6665545 555555554 9999999999998877665 4588889999999 6999999999999998332 21
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 156 KSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 156 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...+..+|.++...|+.++|...|++
T Consensus 188 ----~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 188 ----ENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 37889999999999999999999976
No 52
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.90 E-value=6.2e-08 Score=70.98 Aligned_cols=107 Identities=12% Similarity=0.040 Sum_probs=79.1
Q ss_pred ChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 75 NKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 75 ~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
.....+.++..+|.++... ++++|+.+|++++.+.. ++...+.++.++|.+|... |++++|+.+|++|+.+.+..
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~-g~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSN-GEHTKALEYYFQALERNPFL 105 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCc
Confidence 3445677888999999876 99999999999998843 3344566899999999995 99999999999999986543
Q ss_pred C-ChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 154 E-NKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 154 ~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
. .....+.++.++|.++..+|+++.|+..|++
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 2 1122233444455555589998877666643
No 53
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.86 E-value=1.9e-07 Score=70.43 Aligned_cols=115 Identities=16% Similarity=0.198 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-HhcC-C--HHHHHHHHHHHHHHHHHcCChhH
Q psy5288 42 LYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANC-YKKS-N--PAEAIKAIERAVEIHTDMGRFIM 117 (186)
Q Consensus 42 ~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~-y~~~-~--~~~A~~~~~~Al~i~~~~~~~~~ 117 (186)
.+...|.+|...|++++|+.+|.+++.+ +|.. ...+..+|.+ |... + +++|...+++++.+......
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~-~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~--- 145 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQL-----RGEN-AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVT--- 145 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChh---
Confidence 4556688999999999999999999998 4444 4445577775 4443 4 69999999999988877644
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYS 170 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y 170 (186)
.+..+|.++... |++++|+.+|++++++.+...++..... -++.+...
T Consensus 146 ---al~~LA~~~~~~-g~~~~Ai~~~~~aL~l~~~~~~r~~~i~-~i~~a~~~ 193 (198)
T PRK10370 146 ---ALMLLASDAFMQ-ADYAQAIELWQKVLDLNSPRVNRTQLVE-SINMAKLL 193 (198)
T ss_pred ---HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCccHHHHHH-HHHHHHHH
Confidence 889999999995 9999999999999999887665544432 24444433
No 54
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.84 E-value=1.5e-06 Score=78.97 Aligned_cols=140 Identities=12% Similarity=0.063 Sum_probs=115.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh--hHHHH
Q psy5288 44 VRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF--IMVAK 120 (186)
Q Consensus 44 ~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~--~~~a~ 120 (186)
...|.++...|++++|...+.++....+..|++......+..++.++... ++++|..++++++++....+.. ...+.
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 34456678899999999999999999999998888777888888888766 9999999999999998877532 22344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+..+|.++..+ |++++|...+.+++.+.+..+. .....++..+|.++...|++++|...+++
T Consensus 575 ~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 575 LLRIRAQLLWEW-ARLDEAEQCARKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566789999885 9999999999999999876543 23346778899999999999999988764
No 55
>KOG0553|consensus
Probab=98.78 E-value=9.7e-08 Score=74.85 Aligned_cols=104 Identities=22% Similarity=0.315 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChh
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFI 116 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~ 116 (186)
.-++-...-|+-+...++|.+|++.|.+|+.+ +|..+.. |.+=+..|.++ +++.|++-++.|+.|...-
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l-----~P~nAVy-ycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y---- 148 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL-----DPTNAVY-YCNRAAAYSKLGEYEDAVKDCESALSIDPHY---- 148 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----CCCcchH-HHHHHHHHHHhcchHHHHHHHHHHHhcChHH----
Confidence 33444555588888999999999999999999 6666654 44555566666 8999999999999876444
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q psy5288 117 MVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE 154 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~ 154 (186)
...|.+||.+|.. +|++++|++.|++|+++.+.+.
T Consensus 149 --skay~RLG~A~~~-~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 149 --SKAYGRLGLAYLA-LGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred --HHHHHHHHHHHHc-cCcHHHHHHHHHhhhccCCCcH
Confidence 3478999999999 5999999999999999988653
No 56
>KOG1173|consensus
Probab=98.77 E-value=9.4e-08 Score=80.32 Aligned_cols=139 Identities=17% Similarity=0.155 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhc-CCHHH
Q psy5288 33 GNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK-SNPAE 97 (186)
Q Consensus 33 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~-~~~~~ 97 (186)
.+++.+|..+|.++ |..|...|..++|..||..|.++....-.| .+ =+|--|.. .+..-
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP-----~L-Ylgmey~~t~n~kL 398 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP-----SL-YLGMEYMRTNNLKL 398 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch-----HH-HHHHHHHHhccHHH
Confidence 36667777777766 456667777777777777777775432222 11 23333433 36778
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHHHHhccC
Q psy5288 98 AIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENK--SSANKCLIKIANYSALTDH 175 (186)
Q Consensus 98 A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~--~~~~~~~~~la~~y~~~g~ 175 (186)
|-++|.+|+.|.+.. .-++..+|-+.... +.|.+|+.+|+.++...+..... .|. ..++|||.+|++++.
T Consensus 399 Ae~Ff~~A~ai~P~D------plv~~Elgvvay~~-~~y~~A~~~f~~~l~~ik~~~~e~~~w~-p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSD------PLVLHELGVVAYTY-EEYPEALKYFQKALEVIKSVLNEKIFWE-PTLNNLGHAYRKLNK 470 (611)
T ss_pred HHHHHHHHHhcCCCc------chhhhhhhheeehH-hhhHHHHHHHHHHHHHhhhccccccchh-HHHHhHHHHHHHHhh
Confidence 888999988876544 23678899998875 89999999999999776654433 354 588999999999999
Q ss_pred HHHHHHHHHh
Q psy5288 176 LDKAIKLYEQ 185 (186)
Q Consensus 176 ~~~A~~~~~~ 185 (186)
|++||.+|++
T Consensus 471 ~~eAI~~~q~ 480 (611)
T KOG1173|consen 471 YEEAIDYYQK 480 (611)
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 57
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.77 E-value=2.4e-07 Score=75.23 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHH
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSA 159 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~ 159 (186)
......|.++... ++++|+..+++++++.... +..+..+|.++... |++++|+.+++++++..+.. +...
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~------~~~~~~la~i~~~~-g~~~eA~~~l~~~l~~~~~~--~~~~ 185 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDD------AWAVHAVAHVLEMQ-GRFKEGIAFMESWRDTWDCS--SMLR 185 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHc-CCHHHHHHHHHhhhhccCCC--cchh
Confidence 3444556666655 8999999999999876554 44788899999995 99999999999999987642 2223
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 160 NKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 160 ~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++..+|.++...|++++|+..|++
T Consensus 186 ~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 186 GHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35778999999999999999999976
No 58
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.77 E-value=1e-07 Score=66.91 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHH
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMV 118 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~ 118 (186)
.......|..+...|++++|.+.+.+++.+ ++. ....+..+|.+|... ++++|+.++++++.+....
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------ 84 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD------ 84 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------
Confidence 355666677777888888888888887776 232 245566778787665 7888888888877764332
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
...+..+|.+|... |++++|+.+|++++.+.+..
T Consensus 85 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 85 PRPYFHAAECLLAL-GEPESALKALDLAIEICGEN 118 (135)
T ss_pred hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcccc
Confidence 34667788888874 88888888888888876654
No 59
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.76 E-value=1.5e-07 Score=67.84 Aligned_cols=101 Identities=17% Similarity=0.154 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF 115 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~ 115 (186)
++-.+..-..|..+...|++++|...|.-...+ +|... ..|.++|-|+... ++.+|+.+|.+|..+.++.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~-----Dp~~~-~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd--- 102 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY-----DAWSF-DYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA--- 102 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcccH-HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence 445555555555555666666666666655555 33333 3344666666554 6666666666666555422
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCY 150 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~ 150 (186)
+..+.++|.++.. +|+.+.|...|+.|+.+.
T Consensus 103 ---p~~~~~ag~c~L~-lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 103 ---PQAPWAAAECYLA-CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---chHHHHHHHHHHH-cCCHHHHHHHHHHHHHHh
Confidence 2255666666666 466666666666666665
No 60
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.75 E-value=2.9e-07 Score=67.74 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCh
Q psy5288 78 DAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENK 156 (186)
Q Consensus 78 ~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~ 156 (186)
..+..+...|.++... ++++|+.+|++++.+..... ..+.++..+|.++.. +|++++|+.+|++++.+.+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~--- 105 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYAS-NGEHDKALEYYHQALELNPKQ--- 105 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccc---
Confidence 3344555666655544 66666666666665543321 224456666666666 366666666666666654432
Q ss_pred HHHHHHHHHHHHHHHhccC
Q psy5288 157 SSANKCLIKIANYSALTDH 175 (186)
Q Consensus 157 ~~~~~~~~~la~~y~~~g~ 175 (186)
...+..+|.+|...|+
T Consensus 106 ---~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 106 ---PSALNNIAVIYHKRGE 121 (172)
T ss_pred ---HHHHHHHHHHHHHcCC
Confidence 1334455555554443
No 61
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.75 E-value=1.4e-07 Score=61.11 Aligned_cols=80 Identities=23% Similarity=0.198 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhc
Q psy5288 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALT 173 (186)
Q Consensus 94 ~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~ 173 (186)
++++|+.++++.++.... ++ -..++..+|.+|... |+|++|+.++++ ..+.+.. ..+...+|.++.++
T Consensus 4 ~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~-~~y~~A~~~~~~-~~~~~~~------~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQ-GKYEEAIELLQK-LKLDPSN------PDIHYLLARCLLKL 71 (84)
T ss_dssp -HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHT-THHHHHHHHHHC-HTHHHCH------HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHC-CCHHHHHHHHHH-hCCCCCC------HHHHHHHHHHHHHh
Confidence 678899999998887765 22 334777799999995 999999999999 5554422 24556679999999
Q ss_pred cCHHHHHHHHHh
Q psy5288 174 DHLDKAIKLYEQ 185 (186)
Q Consensus 174 g~~~~A~~~~~~ 185 (186)
|+|++|+++|++
T Consensus 72 ~~y~eAi~~l~~ 83 (84)
T PF12895_consen 72 GKYEEAIKALEK 83 (84)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 999999999986
No 62
>KOG1941|consensus
Probab=98.75 E-value=1.2e-06 Score=70.58 Aligned_cols=175 Identities=17% Similarity=0.165 Sum_probs=140.7
Q ss_pred HhHHHHHHHHHHhhccCCCCc--------ccccc-CCCCHHHHHHHHHHHH------------------------HHHHh
Q psy5288 6 QKARQLVAEAEKKISSSSKGF--------FSQFT-GGNKTDEAIDLYVRAG------------------------NLFKL 52 (186)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~--------~~~~~-~~~~~~~A~~~y~~ag------------------------~~~~~ 52 (186)
+++-+..+.|-|..+.-++.. +..+| .-.|+++|+.+-.+|. ..++.
T Consensus 139 q~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~ 218 (518)
T KOG1941|consen 139 QKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL 218 (518)
T ss_pred HHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH
Confidence 555666666666555211100 11233 2258888888777773 35788
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q psy5288 53 GKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK 131 (186)
Q Consensus 53 ~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~ 131 (186)
+|..-+|-+|.+.+.++....|+..-.+.+..-+|++|+.. +.+.|..-|++|..+....||..+.-.++...+.+.+.
T Consensus 219 ~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~ 298 (518)
T KOG1941|consen 219 LGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLET 298 (518)
T ss_pred hcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999977 99999999999999999999998888899999999887
Q ss_pred hcCCHHH-----HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHH
Q psy5288 132 ELEDQEK-----AIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIK 181 (186)
Q Consensus 132 ~lg~~~~-----Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~ 181 (186)
+.-.++ |+++-++++++....|.......+...++.+|..+|.-++=-.
T Consensus 299 -~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~ 352 (518)
T KOG1941|consen 299 -LRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRA 352 (518)
T ss_pred -HHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHH
Confidence 355666 9999999999999999888888999999999998886655333
No 63
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.74 E-value=4.4e-08 Score=60.92 Aligned_cols=60 Identities=20% Similarity=0.301 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcc-CHHHHHHHHHh
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTD-HLDKAIKLYEQ 185 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g-~~~~A~~~~~~ 185 (186)
+..+..+|.++... |++++|+.+|++|+++.++. ..++.++|.+|..+| ++++|++.|++
T Consensus 3 a~~~~~~g~~~~~~-~~~~~A~~~~~~ai~~~p~~------~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQ-GDYEEAIEYFEKAIELDPNN------AEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHHT-THHHHHHHHHHHHHHHSTTH------HHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 56889999999995 99999999999999996543 469999999999999 79999999986
No 64
>KOG2002|consensus
Probab=98.74 E-value=2.4e-07 Score=82.03 Aligned_cols=169 Identities=15% Similarity=0.199 Sum_probs=113.1
Q ss_pred HHhHHHHHHHHHHhhcc-C------CCCccccccCCCCHHHHHHHHHHH-----------------HHHHHhcCCHHHHH
Q psy5288 5 EQKARQLVAEAEKKISS-S------SKGFFSQFTGGNKTDEAIDLYVRA-----------------GNLFKLGKKWNDGG 60 (186)
Q Consensus 5 ~~~~~~~~~~a~~~~~~-~------~~~~~~~~~~~~~~~~A~~~y~~a-----------------g~~~~~~g~~~~A~ 60 (186)
-.+|-.++..|.+.-.. | -.. ||-+++|..+..+...+ |..|..+|+|++|.
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~----fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANH----FYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHH----HhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 35566666666554331 0 022 23457888777765554 77888999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc---------------------------
Q psy5288 61 NAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM--------------------------- 112 (186)
Q Consensus 61 ~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~--------------------------- 112 (186)
.+|.+++.+. +..-.-.+.-+|++|... ++..++.||++.++.++.+
T Consensus 328 ~yY~~s~k~~-----~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~ 402 (1018)
T KOG2002|consen 328 KYYMESLKAD-----NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNV 402 (1018)
T ss_pred HHHHHHHccC-----CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence 9999888763 222222233455555443 4445555554444421100
Q ss_pred -----CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 113 -----GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 113 -----~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.....-...+..+|.+|+. ++...++.+|.+|++++...+.+ .....++|+|..+...|++.+|.+.|.+
T Consensus 403 l~K~~~~~~~d~~a~l~laql~e~--~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~ 477 (1018)
T KOG2002|consen 403 LGKVLEQTPVDSEAWLELAQLLEQ--TDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKS 477 (1018)
T ss_pred HHHHHhcccccHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHH
Confidence 1112334578899999986 68888899999999999887766 4458999999999999999999999975
No 65
>KOG1941|consensus
Probab=98.73 E-value=9.8e-07 Score=71.15 Aligned_cols=143 Identities=19% Similarity=0.189 Sum_probs=117.0
Q ss_pred CCHHHHHHHHHHH--------------------HHHHHhcCCHHHHHHHHHHHHHHHHHcC--Chh---HHHHHHHHHHH
Q psy5288 34 NKTDEAIDLYVRA--------------------GNLFKLGKKWNDGGNAFLQAGTLHLKNN--NKH---DAGLCFVDAAN 88 (186)
Q Consensus 34 ~~~~~A~~~y~~a--------------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~--~~~---~aa~~~~~a~~ 88 (186)
+.++++++.|+.| |.+|-...|+++|+.+-.+|+++-+..+ ++. .+...| .++.
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly-hmaV 214 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY-HMAV 214 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH-HHHH
Confidence 4678888888888 5678889999999999999999988754 433 223333 5556
Q ss_pred HHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy5288 89 CYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIA 167 (186)
Q Consensus 89 ~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la 167 (186)
.++.. +.-.|.++++.|.++..+.||....+.+..-+|.||.+. |+.|.|..-|++|+.+....+++-....++...|
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~-gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~A 293 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSR-GDLERAFRRYEQAMGTMASLGDRMGQVEALDGAA 293 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhc-ccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 66655 888999999999999999999999999999999999995 9999999999999999999888877777888888
Q ss_pred HHHHhccCHHH
Q psy5288 168 NYSALTDHLDK 178 (186)
Q Consensus 168 ~~y~~~g~~~~ 178 (186)
.++..+.-..+
T Consensus 294 kc~~~~r~~~k 304 (518)
T KOG1941|consen 294 KCLETLRLQNK 304 (518)
T ss_pred HHHHHHHHhhc
Confidence 88765543333
No 66
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.73 E-value=6.6e-07 Score=80.24 Aligned_cols=133 Identities=13% Similarity=0.105 Sum_probs=106.1
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHH
Q psy5288 33 GNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAE 97 (186)
Q Consensus 33 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~ 97 (186)
.|+.++|++.|.++ +.++...|++++|+.+|.+++.+ +|... .....++.++... ++++
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-----~P~~~-~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-----EPQND-DYQRGLILTLADAGQYDE 101 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-HHHHHHHHHHHHCCCHHH
Confidence 45667777666665 55788999999999999999987 44443 3345778888766 9999
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHH
Q psy5288 98 AIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLD 177 (186)
Q Consensus 98 A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~ 177 (186)
|+..+++++...... +. +..+|.++... |++++|+..|++++.+.++. ...+..++.++...|..+
T Consensus 102 A~~~l~~~l~~~P~~------~~-~~~la~~l~~~-g~~~~Al~~l~~al~~~P~~------~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 102 ALVKAKQLVSGAPDK------AN-LLALAYVYKRA-GRHWDELRAMTQALPRAPQT------QQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHHHHHhCCCC------HH-HHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChH
Confidence 999999998774433 22 77789999985 99999999999999998764 256677899999999999
Q ss_pred HHHHHHHh
Q psy5288 178 KAIKLYEQ 185 (186)
Q Consensus 178 ~A~~~~~~ 185 (186)
+|++.+++
T Consensus 168 ~Al~~l~~ 175 (765)
T PRK10049 168 PALGAIDD 175 (765)
T ss_pred HHHHHHHh
Confidence 99988875
No 67
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.72 E-value=1.4e-07 Score=74.49 Aligned_cols=122 Identities=12% Similarity=0.173 Sum_probs=89.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENI 125 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~l 125 (186)
..++...++++++.+.+.++.. ..........|...|.++... ++++|+++|++|+++.+...+ +...+
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~------~~~~l 186 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEE----LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD------ARNAL 186 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH------HHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHh----ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHHHH
Confidence 4567788888888888777653 223345567788889999876 899999999999998877543 66778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 126 AEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 126 g~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+.++... |+++++.+.+.......+.+. ..+..+|.+|..+|++++|+.+|++
T Consensus 187 ~~~li~~-~~~~~~~~~l~~~~~~~~~~~------~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 187 AWLLIDM-GDYDEAREALKRLLKAAPDDP------DLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHH-HTSC------CHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHC-CChHHHHHHHHHHHHHCcCHH------HHHHHHHHHhccccccccccccccc
Confidence 8888885 999998888887777665433 4667889999999999999999976
No 68
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.72 E-value=4.7e-07 Score=66.61 Aligned_cols=107 Identities=20% Similarity=0.285 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF 115 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~ 115 (186)
+.-+..+...|..+...|++++|+.+|.+++++... +...+..+..+|.+|... ++++|+.++++++.+....
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 105 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ--- 105 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---
Confidence 444557778889999999999999999999987432 223456788999999887 9999999999999986543
Q ss_pred hHHHHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHHHhc
Q psy5288 116 IMVAKHHENIAEIYEKE------LEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~------lg~~~~Ai~~y~kA~~l~~~ 152 (186)
...+..+|.+|... .+++++|+..|++|++++.+
T Consensus 106 ---~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~ 145 (172)
T PRK02603 106 ---PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQ 145 (172)
T ss_pred ---HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHH
Confidence 23445556665542 25677777777777777665
No 69
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.71 E-value=6.3e-06 Score=62.38 Aligned_cols=158 Identities=19% Similarity=0.187 Sum_probs=112.3
Q ss_pred hHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH-----------------HHHHHhcCCHHHHHHHHHHH
Q psy5288 4 NEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA-----------------GNLFKLGKKWNDGGNAFLQA 66 (186)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a-----------------g~~~~~~g~~~~A~~~y~~a 66 (186)
|+..++.+..+|...+. .|+|.+|+..|..+ |..+...|++++|+..|.+-
T Consensus 1 p~~~~~~lY~~a~~~~~------------~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 1 PEDTAEALYQKALEALQ------------QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp ----HHHHHHHHHHHHH------------CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH------------CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35678899999999988 35999999999988 55788999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHHHHHcCChhH-----------HHHHHH
Q psy5288 67 GTLHLKNNNKHDAGLCFVDAANCYKKS------------NPAEAIKAIERAVEIHTDMGRFIM-----------VAKHHE 123 (186)
Q Consensus 67 ~~~~~~~~~~~~aa~~~~~a~~~y~~~------------~~~~A~~~~~~Al~i~~~~~~~~~-----------~a~~~~ 123 (186)
++.+-... .+..++...|.++... ...+|+..|+..++-+++..-... .+.--.
T Consensus 69 i~~yP~~~---~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~ 145 (203)
T PF13525_consen 69 IKLYPNSP---KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL 145 (203)
T ss_dssp HHH-TT-T---THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCc---chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 88875433 2334455555554321 346788888888887776654433 333446
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHH
Q psy5288 124 NIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAI 180 (186)
Q Consensus 124 ~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~ 180 (186)
.+|..|... |.|..|+..++..++-++... .....+..++..|.++|..+.|-
T Consensus 146 ~ia~~Y~~~-~~y~aA~~r~~~v~~~yp~t~---~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 146 YIARFYYKR-GKYKAAIIRFQYVIENYPDTP---AAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHCT-T-HHHHHHHHHHHHHHSTTSH---HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHc-ccHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHhCChHHHH
Confidence 778888885 999999999999999998753 34568899999999999998554
No 70
>KOG0553|consensus
Probab=98.67 E-value=1.1e-06 Score=69.03 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhc
Q psy5288 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALT 173 (186)
Q Consensus 94 ~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~ 173 (186)
+|.+|+..|.+|+.+...+ |.+|-+-+.+|.+ ||+++.||+-.+.|+.+.+. . ...|..||.+|..+
T Consensus 96 ~Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~-----y-skay~RLG~A~~~~ 162 (304)
T KOG0553|consen 96 DYQEAVDKYTEAIELDPTN------AVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPH-----Y-SKAYGRLGLAYLAL 162 (304)
T ss_pred hHHHHHHHHHHHHhcCCCc------chHHHHHHHHHHH-hcchHHHHHHHHHHHhcChH-----H-HHHHHHHHHHHHcc
Confidence 8999999999999887665 5688888999998 79999999999999998543 2 37999999999999
Q ss_pred cCHHHHHHHHHhC
Q psy5288 174 DHLDKAIKLYEQL 186 (186)
Q Consensus 174 g~~~~A~~~~~~~ 186 (186)
|+|.+|++.|+++
T Consensus 163 gk~~~A~~aykKa 175 (304)
T KOG0553|consen 163 GKYEEAIEAYKKA 175 (304)
T ss_pred CcHHHHHHHHHhh
Confidence 9999999999863
No 71
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.67 E-value=1.6e-07 Score=59.83 Aligned_cols=89 Identities=24% Similarity=0.325 Sum_probs=54.1
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHH
Q psy5288 84 VDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKC 162 (186)
Q Consensus 84 ~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~ 162 (186)
..+|.++... ++++|+..+++++++..... .++..+|.++... +++++|+.++++++.+.+... .+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~------~~ 70 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNA------KA 70 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcch------hH
Confidence 3445555443 66666666666655432221 3566677777764 777777777777776654332 45
Q ss_pred HHHHHHHHHhccCHHHHHHHHHh
Q psy5288 163 LIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 163 ~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+..+|.++...|++++|..++++
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 66677777777777777776654
No 72
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.66 E-value=9.3e-06 Score=63.20 Aligned_cols=159 Identities=13% Similarity=0.047 Sum_probs=119.4
Q ss_pred hHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH-----------------HHHHHhcCCHHHHHHHHHHHHHH
Q psy5288 7 KARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA-----------------GNLFKLGKKWNDGGNAFLQAGTL 69 (186)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a-----------------g~~~~~~g~~~~A~~~y~~a~~~ 69 (186)
.++.+..+|.+.+. +|+|++|++.|.++ |.+|...+++++|+..|++.++.
T Consensus 31 ~~~~~Y~~A~~~~~------------~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQ------------DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHH------------CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 56778888888877 36999999999888 45678899999999999999998
Q ss_pred HHHcCChhHHHHHHHHHHHHHhcC----------------C---HHHHHHHHHHHHHHHHHcCCh-----------hHHH
Q psy5288 70 HLKNNNKHDAGLCFVDAANCYKKS----------------N---PAEAIKAIERAVEIHTDMGRF-----------IMVA 119 (186)
Q Consensus 70 ~~~~~~~~~aa~~~~~a~~~y~~~----------------~---~~~A~~~~~~Al~i~~~~~~~-----------~~~a 119 (186)
+.... .+..++...|.++... + ..+|+..+++-++-+++..-. ...+
T Consensus 99 ~P~~~---~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 99 NPTHP---NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CcCCC---chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 65432 3344555666553111 2 246778888887776654332 2334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 120 KHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
..-..+|..|... |.|..|+.-++..++-++.... ....+..+...|..+|..++|.++..
T Consensus 176 ~~e~~ia~~Y~~~-~~y~AA~~r~~~v~~~Yp~t~~---~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 176 KYELSVAEYYTKR-GAYVAVVNRVEQMLRDYPDTQA---TRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHc-CchHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4557788889985 9999999999999999987653 34678889999999999999988654
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=5e-06 Score=66.11 Aligned_cols=135 Identities=10% Similarity=0.107 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChh
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFI 116 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~ 116 (186)
-|.....+..++|....++++|+++-.+..++-.+ ...-..+..|.+++..+... +.+.|+..+.+|+...++.-.
T Consensus 139 fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR-- 215 (389)
T COG2956 139 FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR-- 215 (389)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee--
Confidence 34444445567899999999999887666655222 12335688888999888766 899999999999988777644
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 117 MVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.-.-+|.++..+ |+|+.|++.++..++-. +...+.+...|..+|..+|+..+.+..+.+
T Consensus 216 ----Asi~lG~v~~~~-g~y~~AV~~~e~v~eQn-----~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 216 ----ASIILGRVELAK-GDYQKAVEALERVLEQN-----PEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred ----hhhhhhHHHHhc-cchHHHHHHHHHHHHhC-----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344589999996 99999999999998863 335567889999999999999998876643
No 74
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=9.2e-06 Score=73.92 Aligned_cols=139 Identities=9% Similarity=-0.117 Sum_probs=110.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy5288 45 RAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHE 123 (186)
Q Consensus 45 ~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~ 123 (186)
..+.++...|++++|...+.+++.... .++....+.....+|.++... ++++|...+++++.+....|+....+..+.
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~ 535 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLL 535 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 346677889999999999999987532 223333445566777777655 999999999999999999999888888999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 124 NIAEIYEKELEDQEKAIDHYQHAADCYAGEENK--SSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 124 ~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~--~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+|.++..+ |++++|..++++++++....+.+ ......+..+|.++...|++++|...+.+
T Consensus 536 ~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 598 (903)
T PRK04841 536 QQSEILFAQ-GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARK 598 (903)
T ss_pred HHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999995 99999999999999998765421 22234466789999999999999988764
No 75
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.65 E-value=1.3e-06 Score=78.32 Aligned_cols=142 Identities=7% Similarity=-0.119 Sum_probs=95.8
Q ss_pred CCCCHHHHHHHHHHHHH------------------HHHhcCCHHHHHHHHHHHHHHHH--------HcCChh-HHHHHHH
Q psy5288 32 GGNKTDEAIDLYVRAGN------------------LFKLGKKWNDGGNAFLQAGTLHL--------KNNNKH-DAGLCFV 84 (186)
Q Consensus 32 ~~~~~~~A~~~y~~ag~------------------~~~~~g~~~~A~~~y~~a~~~~~--------~~~~~~-~aa~~~~ 84 (186)
..+++++|+..|.++.. ++...|++++|+..+.++..... ....|. .....+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 34566777666665521 33455677777776666665421 011122 1233444
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHH
Q psy5288 85 DAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCL 163 (186)
Q Consensus 85 ~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~ 163 (186)
..+.++... ++++|+..+++++...+.. ...+..+|.++... |++++|+..+++++.+.++. ...+
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n------~~l~~~lA~l~~~~-g~~~~A~~~l~~al~l~Pd~------~~l~ 430 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGN------QGLRIDYASVLQAR-GWPRAAENELKKAEVLEPRN------INLE 430 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCC------hHHH
Confidence 556666655 8888888888887665443 34788899999885 99999999999999987754 2567
Q ss_pred HHHHHHHHhccCHHHHHHHHHhC
Q psy5288 164 IKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 164 ~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
...|.++..+|++++|...++++
T Consensus 431 ~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 431 VEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 78888899999999999888653
No 76
>KOG1125|consensus
Probab=98.65 E-value=2.4e-07 Score=78.06 Aligned_cols=123 Identities=15% Similarity=0.180 Sum_probs=97.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENI 125 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~l 125 (186)
|.+|...|+|++|++||+.|+.. +|. -...+.++|-+..-. +..+|+..|++|+++.+.- ..+..+|
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v-----~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y------VR~RyNl 504 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQV-----KPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY------VRVRYNL 504 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhc-----CCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe------eeeehhh
Confidence 67899999999999999999997 444 356788999887665 8899999999999986544 2367899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHHHHhccCHHHHHHH
Q psy5288 126 AEIYEKELEDQEKAIDHYQHAADCYAGEENK----SSANKCLIKIANYSALTDHLDKAIKL 182 (186)
Q Consensus 126 g~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~----~~~~~~~~~la~~y~~~g~~~~A~~~ 182 (186)
|..+.. +|.|.+|+.+|-.|+.+.++...+ .....+|..|=.++...++.|-+.++
T Consensus 505 gIS~mN-lG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 505 GISCMN-LGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhhhh-hhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 999999 699999999999999998873222 12235776666777777777755544
No 77
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.65 E-value=8.7e-07 Score=60.29 Aligned_cols=106 Identities=20% Similarity=0.129 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHH
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVA 119 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a 119 (186)
+.+...|..+...|++++|++.|.++... ..+.......+..+|.++... ++++|+.+|++++..+. +.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~ 76 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK---YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---KSPKAP 76 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC---CCCccc
Confidence 45677788888888888888888777653 212122355666777777766 78888888887776543 222345
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 120 KHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
.++..+|.++.. +|++++|+.+|++++..+++.
T Consensus 77 ~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 77 DALLKLGMSLQE-LGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHHH-hCChHHHHHHHHHHHHHCcCC
Confidence 567788888887 488888888888888877653
No 78
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.65 E-value=1.2e-06 Score=59.63 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 82 CFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 82 ~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
.+...|..+... ++++|+..|++++..... .......+..+|.++... |++++|+.+|++++..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK---STYAPNAHYWLGEAYYAQ-GKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---ccccHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHCCCC
Confidence 345666666655 788888888887765432 222345677788888874 88888888888888877653
No 79
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.65 E-value=9.2e-07 Score=62.00 Aligned_cols=91 Identities=19% Similarity=0.134 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHH
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSA 159 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~ 159 (186)
......|.++... ++++|++.+++++.+.... ...+..+|.++... |++++|+.+|++++.+.+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~----- 85 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQML-KEYEEAIDAYALAAALDPDDP----- 85 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCh-----
Confidence 4455777777665 8888999988887764332 34778889998884 899999999999888865532
Q ss_pred HHHHHHHHHHH-HhccCHHHHHHHHHh
Q psy5288 160 NKCLIKIANYS-ALTDHLDKAIKLYEQ 185 (186)
Q Consensus 160 ~~~~~~la~~y-~~~g~~~~A~~~~~~ 185 (186)
..+.++|.+| .. |++++|+..|++
T Consensus 86 -~~~~~la~~~~~~-g~~~~A~~~~~~ 110 (135)
T TIGR02552 86 -RPYFHAAECLLAL-GEPESALKALDL 110 (135)
T ss_pred -HHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 3444444443 33 678888887765
No 80
>KOG1129|consensus
Probab=98.65 E-value=2.4e-07 Score=73.79 Aligned_cols=128 Identities=17% Similarity=0.108 Sum_probs=91.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHH--------------cCChhHHH--------------HHHHHHHHHHhcC-CHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLK--------------NNNKHDAG--------------LCFVDAANCYKKS-NPAE 97 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~--------------~~~~~~aa--------------~~~~~a~~~y~~~-~~~~ 97 (186)
+.++..++++++|+++|..+++.... -++|+-+. ..|.++|-|+.-. ++|-
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhh
Confidence 55677777777777777766665321 12333333 4455667776654 7888
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHH
Q psy5288 98 AIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLD 177 (186)
Q Consensus 98 A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~ 177 (186)
++.+|++|+....+ +..++.+|.+||.+... .|++..|-.+|.-|+.-..+. +..++|||.+-.+.|+.+
T Consensus 377 ~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~-iGD~nlA~rcfrlaL~~d~~h------~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 377 VLPSFQRALSTATQ---PGQAADVWYNLGFVAVT-IGDFNLAKRCFRLALTSDAQH------GEALNNLAVLAARSGDIL 446 (478)
T ss_pred hHHHHHHHHhhccC---cchhhhhhhccceeEEe-ccchHHHHHHHHHHhccCcch------HHHHHhHHHHHhhcCchH
Confidence 88888888766543 45678889999999888 599999999988887753322 367889999889999999
Q ss_pred HHHHHHH
Q psy5288 178 KAIKLYE 184 (186)
Q Consensus 178 ~A~~~~~ 184 (186)
+|..+++
T Consensus 447 ~Arsll~ 453 (478)
T KOG1129|consen 447 GARSLLN 453 (478)
T ss_pred HHHHHHH
Confidence 9988775
No 81
>KOG2002|consensus
Probab=98.64 E-value=3.2e-06 Score=75.12 Aligned_cols=153 Identities=16% Similarity=0.223 Sum_probs=120.3
Q ss_pred CCCCHHHHHHHHHHH---------------HHHHHhcCCHHHHHHHHHHHHHHHHH-------cCCh-------------
Q psy5288 32 GGNKTDEAIDLYVRA---------------GNLFKLGKKWNDGGNAFLQAGTLHLK-------NNNK------------- 76 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a---------------g~~~~~~g~~~~A~~~y~~a~~~~~~-------~~~~------------- 76 (186)
..|++++|-.+|.++ |.+|-..|++..|..||++.++.+.. +|..
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 348999999999988 67888999999999999988876542 1111
Q ss_pred ------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy5288 77 ------------HDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQ 144 (186)
Q Consensus 77 ------------~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~ 144 (186)
..-+.+|..++.+|...++-.++.+|.+|++++...+.. --..+++++|..+.. +|++++|..++.
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~-~g~~~~A~~~f~ 476 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFR-LGNIEKALEHFK 476 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHH-hcChHHHHHHHH
Confidence 011246677788888888878899999999999988876 667799999999998 699999999999
Q ss_pred HHHHHHhccCCh----HHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 145 HAADCYAGEENK----SSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 145 kA~~l~~~~~~~----~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
+|+.......++ ......-.|+|.++..+++++.|-+.|..|
T Consensus 477 ~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~I 522 (1018)
T KOG2002|consen 477 SALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSI 522 (1018)
T ss_pred HHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 999985422111 112245689999999999999999998754
No 82
>KOG0547|consensus
Probab=98.64 E-value=2.1e-07 Score=77.22 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHH
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG-RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSS 158 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~-~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~ 158 (186)
.+|.--+++.... ++++|++.|.+|+++-.... -...++ -++.-|.+....-++.++|+.++.+|+++.++.+
T Consensus 463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~-plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce---- 537 (606)
T KOG0547|consen 463 EVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA-PLVHKALLVLQWKEDINQAENLLRKAIELDPKCE---- 537 (606)
T ss_pred hHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccch-hhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH----
Confidence 3333334554444 79999999999999876643 223332 3344444433334899999999999999977653
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 159 ANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 159 ~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..+..||.+-+..|+.++||++|++
T Consensus 538 --~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 538 --QAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6789999999999999999999986
No 83
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.64 E-value=2.1e-07 Score=76.31 Aligned_cols=98 Identities=19% Similarity=0.198 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy5288 43 YVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKH 121 (186)
Q Consensus 43 y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~ 121 (186)
+..-|+.....|++++|+++|.+++.+ ++.. ..++.+.|.+|... ++++|+..+++|+.+.... +.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~------~~a 72 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPNN-AELYADRAQANIKLGNFTEAVADANKAIELDPSL------AKA 72 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHH
Confidence 334456666789999999999999997 4444 45677889998877 9999999999999986543 447
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
+..+|.+|.. +|++++|+.+|++++.+.+..
T Consensus 73 ~~~lg~~~~~-lg~~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 73 YLRKGTACMK-LEEYQTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHHhCCCC
Confidence 8999999999 599999999999999997754
No 84
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.64 E-value=7.2e-07 Score=73.17 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=52.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHH
Q psy5288 85 DAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLI 164 (186)
Q Consensus 85 ~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~ 164 (186)
++...+...++++|+.+|.+|+.+.... +.++.++|.+|.. +|++++|+..+++|+.+.+.. ..++.
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~------~~a~~ 74 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIK-LGNFTEAVADANKAIELDPSL------AKAYL 74 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCC------HHHHH
Confidence 3334444456666666666666554332 3356666666666 366777776666666665432 24566
Q ss_pred HHHHHHHhccCHHHHHHHHHh
Q psy5288 165 KIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 165 ~la~~y~~~g~~~~A~~~~~~ 185 (186)
++|.+|..+|+|++|+..|++
T Consensus 75 ~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 75 RKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred HHHHHHHHhCCHHHHHHHHHH
Confidence 666666666777766666654
No 85
>KOG1125|consensus
Probab=98.61 E-value=3e-07 Score=77.45 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=71.2
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHH
Q psy5288 87 ANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIK 165 (186)
Q Consensus 87 ~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~ 165 (186)
|.+|... ++++|+.||+.|+.+-+.... .+++||..+.. ..+.++||..|.+|+++.+.- .+++.|
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v~Pnd~~------lWNRLGAtLAN-~~~s~EAIsAY~rALqLqP~y------VR~RyN 503 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQVKPNDYL------LWNRLGATLAN-GNRSEEAISAYNRALQLQPGY------VRVRYN 503 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhcCCchHH------HHHHhhHHhcC-CcccHHHHHHHHHHHhcCCCe------eeeehh
Confidence 4444433 789999999999887766644 89999999998 589999999999999996642 367899
Q ss_pred HHHHHHhccCHHHHHHHHHh
Q psy5288 166 IANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 166 la~~y~~~g~~~~A~~~~~~ 185 (186)
||..+..+|.|++|+++|-.
T Consensus 504 lgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHH
Confidence 99999999999999999854
No 86
>KOG2076|consensus
Probab=98.57 E-value=9.6e-07 Score=77.68 Aligned_cols=127 Identities=17% Similarity=0.125 Sum_probs=99.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy5288 43 YVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKH 121 (186)
Q Consensus 43 y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~ 121 (186)
...++.+..+.+...+++..+..--.. .+......|..+++.|... ++.+|+.++-....- ...+-+.+
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~-----~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-----~~~~~~~v 451 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNV-----WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-----EGYQNAFV 451 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcC-----ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-----ccccchhh
Confidence 666666777777777766654322221 3677788999999999887 899999998765432 22233779
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
+.++|.||.. +|.+++|+++|++++.+.+.. .++.+.|+.+|.++|++++|.+.++++
T Consensus 452 w~~~a~c~~~-l~e~e~A~e~y~kvl~~~p~~------~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 452 WYKLARCYME-LGEYEEAIEFYEKVLILAPDN------LDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred hHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCc------hhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 9999999999 699999999999999997765 268899999999999999999998763
No 87
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.56 E-value=3.1e-06 Score=61.01 Aligned_cols=71 Identities=14% Similarity=0.081 Sum_probs=34.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCh-HHHHHHHHH
Q psy5288 88 NCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENK-SSANKCLIK 165 (186)
Q Consensus 88 ~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~-~~~~~~~~~ 165 (186)
..|...++++|...|+-...+-... +.++.+||.++..+ |++++||..|.+|+.+.++...+ ...+.|+..
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~~------~~y~~gLG~~~Q~~-g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAWS------FDYWFRLGECCQAQ-KHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3333445555555555444443332 22555555555553 55555555555555555443322 233344444
No 88
>KOG1129|consensus
Probab=98.55 E-value=1.4e-07 Score=75.10 Aligned_cols=135 Identities=10% Similarity=0.059 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------------HHHcCChhHHHHHHHHHHHHH---------------
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTL--------------HLKNNNKHDAGLCFVDAANCY--------------- 90 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~--------------~~~~~~~~~aa~~~~~a~~~y--------------- 90 (186)
.+.|.-...+|.+.+++..|+..|...++. ++.+++.+.+...|....+..
T Consensus 256 ~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf 335 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF 335 (478)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc
Confidence 456777888899999999999888765553 444555555555554443221
Q ss_pred hcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Q psy5288 91 KKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYS 170 (186)
Q Consensus 91 ~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y 170 (186)
...+++-|+++|++.+.+-...+. .+.++|.|... .+++|-++..|++|+....+.+ .+.++|.|||.|.
T Consensus 336 Y~~~PE~AlryYRRiLqmG~~spe------Lf~NigLCC~y-aqQ~D~~L~sf~RAlstat~~~---~aaDvWYNlg~va 405 (478)
T KOG1129|consen 336 YDNNPEMALRYYRRILQMGAQSPE------LFCNIGLCCLY-AQQIDLVLPSFQRALSTATQPG---QAADVWYNLGFVA 405 (478)
T ss_pred cCCChHHHHHHHHHHHHhcCCChH------HHhhHHHHHHh-hcchhhhHHHHHHHHhhccCcc---hhhhhhhccceeE
Confidence 112578888888888777655543 78999999888 4899999999999999876543 5679999999999
Q ss_pred HhccCHHHHHHHHH
Q psy5288 171 ALTDHLDKAIKLYE 184 (186)
Q Consensus 171 ~~~g~~~~A~~~~~ 184 (186)
+..||+.-|..+|.
T Consensus 406 V~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 406 VTIGDFNLAKRCFR 419 (478)
T ss_pred EeccchHHHHHHHH
Confidence 99999999998885
No 89
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.54 E-value=1.9e-06 Score=67.75 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHH
Q psy5288 80 GLCFVDAANCYK-KSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSS 158 (186)
Q Consensus 80 a~~~~~a~~~y~-~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~ 158 (186)
...|..+...+. ..++++|+..|++.+..+.+.. .+...+..+|.+|... |++++|+..|++.+..+++.. .
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~-g~~~~A~~~f~~vv~~yP~s~---~ 215 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNK-GKKDDAAYYFASVVKNYPKSP---K 215 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCc---c
Confidence 344544444434 4589999999999988887654 3445788899999995 999999999999999988643 3
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 159 ANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 159 ~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
....+.++|.+|..+|++++|+++|+++
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3578899999999999999999999764
No 90
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.53 E-value=1.1e-06 Score=55.87 Aligned_cols=97 Identities=23% Similarity=0.300 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHH
Q psy5288 42 LYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAK 120 (186)
Q Consensus 42 ~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~ 120 (186)
.+...|..+...|++++|+..+.+++++. +.. ...+..+|.++... ++++|+.++++++.+..... .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-----PDN-ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------K 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-----Ccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------h
Confidence 35567778888999999999999998873 222 25567888888876 89999999999988764443 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~ 151 (186)
++..+|.++... |++++|..++.+++.+.+
T Consensus 70 ~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 70 AYYNLGLAYYKL-GKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHHHccCC
Confidence 788999999995 999999999999987653
No 91
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.52 E-value=2.2e-07 Score=57.68 Aligned_cols=64 Identities=25% Similarity=0.338 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Q psy5288 80 GLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELE-DQEKAIDHYQHAADCY 150 (186)
Q Consensus 80 a~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg-~~~~Ai~~y~kA~~l~ 150 (186)
+..|.+.|.++... ++++|+.+|.+++++.... +.++.++|.+|..+ | ++++|+..+++|+.+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~------~~~~~~~g~~~~~~-~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN------AEAYYNLGLAYMKL-GKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH------HHHHHHHHHHHHHT-TTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHh-CccHHHHHHHHHHHHHcC
Confidence 34556666666655 6777777777777664222 33677777777774 7 5777777777777764
No 92
>KOG0543|consensus
Probab=98.49 E-value=3e-06 Score=69.05 Aligned_cols=109 Identities=19% Similarity=0.219 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC--Chh-------HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNN--NKH-------DAGLCFVDAANCYKKS-NPAEAIKAIERAVE 107 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~--~~~-------~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~ 107 (186)
++++....-|+.|...|+|..|..-|.++.+....-. +.+ --..++.|++-||.++ ++..|+.++.++|+
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3444455558888889999999999999888865321 111 1246788999999998 89999999999988
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 108 IHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 108 i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
+-..+-. .+++-|.++.. +|+|+.|+..|++|+.+.+.+
T Consensus 286 ~~~~N~K------ALyRrG~A~l~-~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 286 LDPNNVK------ALYRRGQALLA-LGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred cCCCchh------HHHHHHHHHHh-hccHHHHHHHHHHHHHhCCCc
Confidence 7665533 78999999999 599999999999999998876
No 93
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.48 E-value=1.6e-06 Score=56.09 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=61.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q psy5288 53 GKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK 131 (186)
Q Consensus 53 ~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~ 131 (186)
.|++++|+..|+++.+.... ++ ....+..+|.||... ++++|+..+++ ..+.... ..+...+|.++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~------~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN------PDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH------HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC------HHHHHHHHHHHHH
Confidence 57899999999999998533 22 344566799999877 89999999988 3333222 3456677999999
Q ss_pred hcCCHHHHHHHHHHH
Q psy5288 132 ELEDQEKAIDHYQHA 146 (186)
Q Consensus 132 ~lg~~~~Ai~~y~kA 146 (186)
+|++++|+.+|++|
T Consensus 71 -l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 -LGKYEEAIKALEKA 84 (84)
T ss_dssp -TT-HHHHHHHHHHH
T ss_pred -hCCHHHHHHHHhcC
Confidence 69999999999986
No 94
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.47 E-value=5.1e-06 Score=65.36 Aligned_cols=109 Identities=17% Similarity=0.023 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhH
Q psy5288 39 AIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIM 117 (186)
Q Consensus 39 A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~ 117 (186)
.-..|..+-..+...|+|++|+..|.+.++.+-. ...+..++..+|.+|... ++++|+..|++.+..+.... .
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~---s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~---~ 215 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD---STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP---K 215 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc---c
Confidence 4566888877767779999999999999998632 223456777999999876 99999999999988887554 4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE 154 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~ 154 (186)
....+.++|.++.. +|++++|+..|++.+..+++..
T Consensus 216 ~~dAl~klg~~~~~-~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 216 AADAMFKVGVIMQD-KGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred hhHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCH
Confidence 56679999999998 5999999999999999998653
No 95
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.45 E-value=1.9e-05 Score=56.39 Aligned_cols=99 Identities=16% Similarity=0.103 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChh
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFI 116 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~ 116 (186)
-+.......+.++...|++++|...|..++.-. .++.....+..+++.++... ++++|+..++. ..+..
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~~~~~ 115 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLARLRLARILLQQGQYDEALATLQQ-------IPDEA 115 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------ccCcc
Confidence 344445556778889999999999999988842 34555556677889998876 99999998855 22333
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5288 117 MVAKHHENIAEIYEKELEDQEKAIDHYQHAA 147 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~ 147 (186)
..+......|.+|..+ |++++|+..|++|+
T Consensus 116 ~~~~~~~~~Gdi~~~~-g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 116 FKALAAELLGDIYLAQ-GDYDEARAAYQKAL 145 (145)
T ss_pred hHHHHHHHHHHHHHHC-CCHHHHHHHHHHhC
Confidence 4566788899999996 99999999999985
No 96
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.45 E-value=4.5e-06 Score=75.05 Aligned_cols=126 Identities=12% Similarity=0.009 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHH
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVA 119 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a 119 (186)
..|.++ .+..+.|++..|++.|.++++. +|......+ .+..++... +.++|+.++++++ ...... .
T Consensus 36 ~~y~~a-ii~~r~Gd~~~Al~~L~qaL~~-----~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~--~p~n~~----~ 102 (822)
T PRK14574 36 TQYDSL-IIRARAGDTAPVLDYLQEESKA-----GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ--SSMNIS----S 102 (822)
T ss_pred HHHHHH-HHHHhCCCHHHHHHHHHHHHhh-----CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc--cCCCCC----H
Confidence 344443 4555678888888888888876 455432333 555555444 7778888888776 111222 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 120 KHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
..+..+|.+|..+ |++++|++.|+++++..+++. .++..++.+|...++.++|++.++++
T Consensus 103 ~~llalA~ly~~~-gdyd~Aiely~kaL~~dP~n~------~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 103 RGLASAARAYRNE-KRWDQALALWQSSLKKDPTNP------DLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 2334446677774 888888888888887766542 44456677777788888888777653
No 97
>KOG0547|consensus
Probab=98.43 E-value=6.2e-06 Score=68.74 Aligned_cols=124 Identities=13% Similarity=0.197 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy5288 43 YVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKH 121 (186)
Q Consensus 43 y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~ 121 (186)
|.+.+.+|....+..+-...|.+|.++ +|...-.+|++ |+++.-+ ++++|+.-|++|..+.... +..
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~l-----dp~n~dvYyHR-gQm~flL~q~e~A~aDF~Kai~L~pe~------~~~ 430 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDL-----DPENPDVYYHR-GQMRFLLQQYEEAIADFQKAISLDPEN------AYA 430 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhc-----CCCCCchhHhH-HHHHHHHHHHHHHHHHHHHHhhcChhh------hHH
Confidence 444455666677777777777777777 55555555544 4444433 7888888888888876555 335
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+..++-+...+ ++.+++...|+.+..-|++. ..++.-.|+++...++|++|++.|+.
T Consensus 431 ~iQl~~a~Yr~-~k~~~~m~~Fee~kkkFP~~------~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 431 YIQLCCALYRQ-HKIAESMKTFEEAKKKFPNC------PEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCC------chHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 56666666664 88999999999999988875 37888899999999999999999875
No 98
>KOG2076|consensus
Probab=98.40 E-value=9e-06 Score=71.75 Aligned_cols=135 Identities=16% Similarity=0.228 Sum_probs=103.8
Q ss_pred CCCCHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Q psy5288 32 GGNKTDEAI-DLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIH 109 (186)
Q Consensus 32 ~~~~~~~A~-~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~ 109 (186)
++.....++ .++-+|-..|- .|++++|.+.+..+++. +| .....|.-+|.||+.. +..+++.++-.|.-+.
T Consensus 131 ~~~~l~~~l~~ll~eAN~lfa-rg~~eeA~~i~~EvIkq-----dp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~ 203 (895)
T KOG2076|consen 131 GKSKLAPELRQLLGEANNLFA-RGDLEEAEEILMEVIKQ-----DP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN 203 (895)
T ss_pred cccccCHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHh-----Cc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 455666644 44555554554 49999999999888886 33 3455677999999987 9999999988776554
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 110 TDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 110 ~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
+..- ..|..++....+ +|++++|+-+|.+|+...+.+ -....+-+.+|.+.|++.+|++.|.++
T Consensus 204 p~d~------e~W~~ladls~~-~~~i~qA~~cy~rAI~~~p~n------~~~~~ers~L~~~~G~~~~Am~~f~~l 267 (895)
T KOG2076|consen 204 PKDY------ELWKRLADLSEQ-LGNINQARYCYSRAIQANPSN------WELIYERSSLYQKTGDLKRAMETFLQL 267 (895)
T ss_pred CCCh------HHHHHHHHHHHh-cccHHHHHHHHHHHHhcCCcc------hHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 4432 378889999998 599999999999999986654 256677889999999999999999764
No 99
>PLN02789 farnesyltranstransferase
Probab=98.38 E-value=1.4e-05 Score=64.70 Aligned_cols=132 Identities=11% Similarity=0.037 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Q psy5288 32 GGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS--NPAEAIKAIERAVEIH 109 (186)
Q Consensus 32 ~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~--~~~~A~~~~~~Al~i~ 109 (186)
-+++|.++.++|..+ +...+.+++|+..+.+++.+ +|... .++..-+.++..+ ++++++.++.+++...
T Consensus 32 y~~~~~~a~~~~ra~---l~~~e~serAL~lt~~aI~l-----nP~~y-taW~~R~~iL~~L~~~l~eeL~~~~~~i~~n 102 (320)
T PLN02789 32 YTPEFREAMDYFRAV---YASDERSPRALDLTADVIRL-----NPGNY-TVWHFRRLCLEALDADLEEELDFAEDVAEDN 102 (320)
T ss_pred eCHHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHH-----CchhH-HHHHHHHHHHHHcchhHHHHHHHHHHHHHHC
Confidence 457888888888775 56678888999999888887 34433 3444555566555 4678888888887665
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 110 TDMGRFIMVAKHHENIAEIYEKELEDQ--EKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 110 ~~~~~~~~~a~~~~~lg~~y~~~lg~~--~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+.-. ++..-+.++.. +|.. ++++.++++++++.+++ ..+|.+.+-++..+|+|++|++++++
T Consensus 103 pknyq------aW~~R~~~l~~-l~~~~~~~el~~~~kal~~dpkN------y~AW~~R~w~l~~l~~~~eeL~~~~~ 167 (320)
T PLN02789 103 PKNYQ------IWHHRRWLAEK-LGPDAANKELEFTRKILSLDAKN------YHAWSHRQWVLRTLGGWEDELEYCHQ 167 (320)
T ss_pred CcchH------HhHHHHHHHHH-cCchhhHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44422 56666766666 4653 66777888888776654 36777778888888888888887765
No 100
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.36 E-value=2.5e-05 Score=54.20 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=50.1
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHH
Q psy5288 84 VDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKC 162 (186)
Q Consensus 84 ~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~ 162 (186)
.+.+.++... ++++|+.+|++|+.. .+ +.......+..+|..+.. +|++++|+..+++++.-++..... ...
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~--gL-~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~~~~~---~~l 77 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAA--GL-SGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPDDELN---AAL 77 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCcccc---HHH
Confidence 3455555544 666666666666552 11 112333456666666666 466666666666666655442211 122
Q ss_pred HHHHHHHHHhccCHHHHHHHH
Q psy5288 163 LIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 163 ~~~la~~y~~~g~~~~A~~~~ 183 (186)
...++.++...|++++|+..+
T Consensus 78 ~~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 78 RVFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHH
Confidence 233555666666666666654
No 101
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.34 E-value=1.4e-06 Score=53.44 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 124 NIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 124 ~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+|..+... |++++|+..|++++...+.. ..++..+|.++..+|++++|+.+|++
T Consensus 2 ~~a~~~~~~-g~~~~A~~~~~~~l~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 2 ALARALYQQ-GDYDEAIAAFEQALKQDPDN------PEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHHHHHHC-THHHHHHHHHHHHHCCSTTH------HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHc-CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 578888885 99999999999999987653 47999999999999999999999986
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.33 E-value=3.5e-05 Score=62.54 Aligned_cols=124 Identities=8% Similarity=-0.092 Sum_probs=85.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy5288 46 AGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK-SNPAEAIKAIERAVEIHTDMGRFIMVAKHHEN 124 (186)
Q Consensus 46 ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~-~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~ 124 (186)
.+.+....|++++|...+.++++. +|........ +..+.. .++..+.....+++.. ...........+..
T Consensus 49 ~a~~~~~~g~~~~A~~~~~~~l~~-----~P~~~~a~~~--~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~ 119 (355)
T cd05804 49 EALSAWIAGDLPKALALLEQLLDD-----YPRDLLALKL--HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGM 119 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHH--hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHH
Confidence 355677889999999999999886 3433321111 222211 1222222333333332 33445555667788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 125 IAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 125 lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+|.++..+ |++++|+..+++++.+.++. ...+..+|.+|...|++++|+.++++
T Consensus 120 ~a~~~~~~-G~~~~A~~~~~~al~~~p~~------~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 120 LAFGLEEA-GQYDRAEEAARRALELNPDD------AWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999995 99999999999999997654 25778899999999999999999876
No 103
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=1.7e-05 Score=70.20 Aligned_cols=131 Identities=10% Similarity=0.019 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHH
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMV 118 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~ 118 (186)
-+...++-.+...-+....+....-++....+. ...-...+..+|.+-... .+++|...++.++++..+.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~------ 119 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRR---YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS------ 119 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh---ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc------
Confidence 456677777777777777777777666666543 344477788999998877 9999999999999988766
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
.....+++.++..+ +++++|...+++++...+++ ...+..+|.++..+|+|++|+++|+++
T Consensus 120 ~~a~~~~a~~L~~~-~~~eeA~~~~~~~l~~~p~~------~~~~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 120 SEAFILMLRGVKRQ-QGIEAGRAEIELYFSGGSSS------AREILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred HHHHHHHHHHHHHh-ccHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34788899999985 99999999999999987754 367889999999999999999999874
No 104
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=3.9e-05 Score=63.59 Aligned_cols=116 Identities=14% Similarity=0.142 Sum_probs=90.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy5288 48 NLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIA 126 (186)
Q Consensus 48 ~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg 126 (186)
..+...++++.|++.+++..+- +|+- ..-+++++... +..+|++.+.+++...+.. +..+...+
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~-----~pev----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Qa 241 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRER-----DPEV----AVLLARVYLLMNEEVEAIRLLNEALKENPQD------SELLNLQA 241 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhc-----CCcH----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence 4566678888888888776654 3432 22467777665 6789999999998433222 66777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 127 EIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 127 ~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..+... ++++.|+...++|..+.+.. -.+|..|+.+|+.+|+|++|+-.++.
T Consensus 242 ~fLl~k-~~~~lAL~iAk~av~lsP~~------f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 242 EFLLSK-KKYELALEIAKKAVELSPSE------FETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHhc-CCHHHHHHHHHHHHHhCchh------HHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 888886 99999999999999997754 47999999999999999999987763
No 105
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=98.28 E-value=1.9e-05 Score=60.28 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc----CC---hHHHHHHHHH
Q psy5288 94 NPAEAIKAIERAVEIHTDMG-RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE----EN---KSSANKCLIK 165 (186)
Q Consensus 94 ~~~~A~~~~~~Al~i~~~~~-~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~----~~---~~~~~~~~~~ 165 (186)
.+++|++.|.-|+-.....+ ++...|.++.++|.+|... |+-+....++++|++.|.+. .. ......++.-
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~-~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDL-GDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 67899999999998887554 7789999999999999995 99888888888888887752 11 2233457788
Q ss_pred HHHHHHhccCHHHHHHHHHhC
Q psy5288 166 IANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 166 la~~y~~~g~~~~A~~~~~~~ 186 (186)
+|++..++|++++|+..|.+|
T Consensus 171 igeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999999875
No 106
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.26 E-value=1.7e-05 Score=71.50 Aligned_cols=115 Identities=9% Similarity=0.094 Sum_probs=55.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy5288 49 LFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAE 127 (186)
Q Consensus 49 ~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~ 127 (186)
+|...|++++|++.|.++++. +|... ..+.-++.+|... ++++|++.++++....... ..+..++.
T Consensus 111 ly~~~gdyd~Aiely~kaL~~-----dP~n~-~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~-------~~~l~lay 177 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKK-----DPTNP-DLISGMIMTQADAGRGGVVLKQATELAERDPTV-------QNYMTLSY 177 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhh-----CCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch-------HHHHHHHH
Confidence 455555555555555555554 33332 2222334444444 5555555555554443321 11122344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 128 IYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 128 ~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
++... +++.+|++.|+++++..+.+. .++..+..++...|-.+.|.+..
T Consensus 178 L~~~~-~~~~~AL~~~ekll~~~P~n~------e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 178 LNRAT-DRNYDALQASSEAVRLAPTSE------EVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred HHHhc-chHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCcHHHHHHH
Confidence 44332 455446666666666554331 34455555555555555555544
No 107
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.25 E-value=0.00013 Score=55.10 Aligned_cols=139 Identities=17% Similarity=0.121 Sum_probs=96.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHH
Q psy5288 42 LYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAK 120 (186)
Q Consensus 42 ~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~ 120 (186)
.+...|..+...|++.+|+..|.+....+.. ...+..+...+|.+|... ++++|+..+++-++.++.... +..
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~---~~~ 80 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK---ADY 80 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT---HHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---hhh
Confidence 3444456666789999999999999887633 334556667888888776 999999999998888777654 455
Q ss_pred HHHHHHHHHHHh----------cCCHHHHHHHHHHHHHHHhccCChHHHH-----------HHHHHHHHHHHhccCHHHH
Q psy5288 121 HHENIAEIYEKE----------LEDQEKAIDHYQHAADCYAGEENKSSAN-----------KCLIKIANYSALTDHLDKA 179 (186)
Q Consensus 121 ~~~~lg~~y~~~----------lg~~~~Ai~~y~kA~~l~~~~~~~~~~~-----------~~~~~la~~y~~~g~~~~A 179 (186)
++..+|.++..+ .+...+|+..|++.+.-++++.....+. .--..+|..|.+.|.|.-|
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHH
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 667777765432 1345689999999999999764332221 2335678889999999999
Q ss_pred HHHHHhC
Q psy5288 180 IKLYEQL 186 (186)
Q Consensus 180 ~~~~~~~ 186 (186)
+..|+.|
T Consensus 161 ~~r~~~v 167 (203)
T PF13525_consen 161 IIRFQYV 167 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
No 108
>KOG4234|consensus
Probab=98.25 E-value=1.8e-05 Score=59.20 Aligned_cols=132 Identities=23% Similarity=0.297 Sum_probs=103.5
Q ss_pred HHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy5288 5 EQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFV 84 (186)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~ 84 (186)
+-+-+.||.+.++.+. .. .+.+--.-++-...-|+-+...|+|++|..-|..|+.+...... ...+.+|.
T Consensus 69 El~eEeLmae~E~i~~---de------ek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~ 138 (271)
T KOG4234|consen 69 ELKEEELMAEIEKIFS---DE------EKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYS 138 (271)
T ss_pred hhhHHHHHHHHHHhcC---cH------HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHh
Confidence 3456788989998888 21 11122233455666689899999999999999999999876543 45678888
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 85 DAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 85 ~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
+-|.+..++ .+..|+.-+-+|++|...... .+..-+.+|+.. ..|+.|++-|.+.+++.+..
T Consensus 139 Nraaa~iKl~k~e~aI~dcsKaiel~pty~k------Al~RRAeayek~-ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 139 NRAAALIKLRKWESAIEDCSKAIELNPTYEK------ALERRAEAYEKM-EKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhHHHHHHhhhHHHHHHHHHhhHhcCchhHH------HHHHHHHHHHhh-hhHHHHHHHHHHHHHhCcch
Confidence 888888888 789999999999998766544 566789999995 99999999999999987753
No 109
>KOG3060|consensus
Probab=98.24 E-value=5.5e-05 Score=58.41 Aligned_cols=121 Identities=18% Similarity=0.123 Sum_probs=72.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIA 126 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg 126 (186)
|..+...|++++|+++|...++= +|...+..-.+++-+-...+.-+|++....=++.+... ...+..++
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~d-----dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D------~EAW~eLa 161 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLED-----DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND------QEAWHELA 161 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhcc-----CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc------HHHHHHHH
Confidence 33455666677777766665542 45555555545544433344446666555555544333 33677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcc---CHHHHHHHHHh
Q psy5288 127 EIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTD---HLDKAIKLYEQ 185 (186)
Q Consensus 127 ~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g---~~~~A~~~~~~ 185 (186)
.+|.+. |++++|+-||++.+-+.|-+ ..++..+|+++.-.| ++.-|.++|.+
T Consensus 162 eiY~~~-~~f~kA~fClEE~ll~~P~n------~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 162 EIYLSE-GDFEKAAFCLEELLLIQPFN------PLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred HHHHhH-hHHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888874 88888888888877765432 256677777765443 55556666654
No 110
>KOG0548|consensus
Probab=98.23 E-value=4.3e-05 Score=64.28 Aligned_cols=131 Identities=19% Similarity=0.165 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------cCChhHH--------------HHHHHHHHHHHh-cCCHHHHHH
Q psy5288 42 LYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK------NNNKHDA--------------GLCFVDAANCYK-KSNPAEAIK 100 (186)
Q Consensus 42 ~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~------~~~~~~a--------------a~~~~~a~~~y~-~~~~~~A~~ 100 (186)
++-..|+.|...++++.++.+|++++.-+++ +...+.+ +.-...-|..+. ..+|..|+.
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 3444566777777888888888877766553 1111111 111122244443 348999999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHH
Q psy5288 101 AIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAI 180 (186)
Q Consensus 101 ~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~ 180 (186)
+|-+|+... +.-+..|.|-|.+|.. ||++..|+.-.++++++.+ .+ ...|..-|.++..+.+|++|+
T Consensus 380 ~YteAIkr~------P~Da~lYsNRAac~~k-L~~~~~aL~Da~~~ieL~p-----~~-~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 380 HYTEAIKRD------PEDARLYSNRAACYLK-LGEYPEALKDAKKCIELDP-----NF-IKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred HHHHHHhcC------CchhHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCc-----hH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999977655 3336689999999999 7999999999999999843 33 367788899999999999999
Q ss_pred HHHHh
Q psy5288 181 KLYEQ 185 (186)
Q Consensus 181 ~~~~~ 185 (186)
+.|++
T Consensus 447 eay~e 451 (539)
T KOG0548|consen 447 EAYQE 451 (539)
T ss_pred HHHHH
Confidence 99975
No 111
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.21 E-value=0.00024 Score=59.14 Aligned_cols=171 Identities=10% Similarity=0.043 Sum_probs=104.7
Q ss_pred hHHhHHHHHHHHHHhhccCCCCcc------ccc-cCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHH
Q psy5288 4 NEQKARQLVAEAEKKISSSSKGFF------SQF-TGGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNA 62 (186)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~------~~~-~~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~ 62 (186)
+++.+++++.+|.+... +..+ .++ +..++++.|...+.++ +.+|...|++++|.+.
T Consensus 133 ~~~~A~~~l~~A~~~~~---~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~ 209 (398)
T PRK10747 133 DEARANQHLERAAELAD---NDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDI 209 (398)
T ss_pred CHHHHHHHHHHHHhcCC---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45677777777766554 2211 001 1457888888887776 4567778888888866
Q ss_pred HHHHHHHHHH----------------------cCChhHHHH--------------HHHHHHHHHhcC-CHHHHHHHHHHH
Q psy5288 63 FLQAGTLHLK----------------------NNNKHDAGL--------------CFVDAANCYKKS-NPAEAIKAIERA 105 (186)
Q Consensus 63 y~~a~~~~~~----------------------~~~~~~aa~--------------~~~~a~~~y~~~-~~~~A~~~~~~A 105 (186)
+.+..+.... ..+...... .....+..+... +.++|....+++
T Consensus 210 l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 210 LPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDG 289 (398)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6555432100 000000001 111223333333 566666666666
Q ss_pred HHH---------HHHc--CCh--------------hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHH
Q psy5288 106 VEI---------HTDM--GRF--------------IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSAN 160 (186)
Q Consensus 106 l~i---------~~~~--~~~--------------~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~ 160 (186)
++. +... +++ +.-+..+..+|.++... +++++|..+|++++.+.++.
T Consensus 290 l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~-~~~~~A~~~le~al~~~P~~------- 361 (398)
T PRK10747 290 LKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH-GEWQEASLAFRAALKQRPDA------- 361 (398)
T ss_pred HhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCH-------
Confidence 552 1111 221 12234678889999995 99999999999999985542
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 161 KCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 161 ~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..+..++.++.++|+.++|.++|++
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4567899999999999999999975
No 112
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.20 E-value=5.6e-05 Score=63.14 Aligned_cols=129 Identities=12% Similarity=0.074 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCh
Q psy5288 39 AIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGL---CFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRF 115 (186)
Q Consensus 39 A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~---~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~ 115 (186)
....+...+..+...|++++|.+...++++.. |+.... .+...+.+ ...+.+.++..++++++...+.-
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~~l~~~~~l-~~~~~~~~~~~~e~~lk~~p~~~-- 333 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLPLCLPIPRL-KPEDNEKLEKLIEKQAKNVDDKP-- 333 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhHHHHHhhhc-CCCChHHHHHHHHHHHHhCCCCh--
Confidence 45566666778999999999999999988863 333322 22111111 11267788888888775443332
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQH--AADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~k--A~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
. ..++..+|.++..+ |++++|.++|++ ++...++. ..+..+|.++..+|+.++|.+++++
T Consensus 334 ~--~~ll~sLg~l~~~~-~~~~~A~~~le~a~a~~~~p~~-------~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 334 K--CCINRALGQLLMKH-GEFIEAADAFKNVAACKEQLDA-------NDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred h--HHHHHHHHHHHHHc-ccHHHHHHHHHHhHHhhcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 35788899999985 999999999995 55554321 3456999999999999999999976
No 113
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.18 E-value=6.4e-06 Score=50.78 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 134 EDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 134 g~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
|++++|+..|++++...+++ ..++..+|.+|.+.|++++|...++++
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred cCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 89999999999999998864 368889999999999999999999875
No 114
>KOG0548|consensus
Probab=98.16 E-value=0.00013 Score=61.52 Aligned_cols=100 Identities=17% Similarity=0.199 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHH
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMV 118 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~ 118 (186)
++-....|+.+...|+|..|+..|.+|+.- +|. -+..|.|-+-||.++ .+..|+..++.++++. +..
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr-----~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~------p~~ 425 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKR-----DPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD------PNF 425 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhc-----CCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------chH
Confidence 444444499999999999999999998875 344 456788999999998 9999999999998882 233
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
...|..-|.++..+ .+|++|++.|++++++.++
T Consensus 426 ~kgy~RKg~al~~m-k~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 426 IKAYLRKGAALRAM-KEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCch
Confidence 45677789999984 9999999999999998654
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.15 E-value=5.6e-05 Score=58.39 Aligned_cols=118 Identities=15% Similarity=0.079 Sum_probs=79.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy5288 46 AGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHEN 124 (186)
Q Consensus 46 ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~ 124 (186)
-|...-..|++..|+..+.++..+ +|.. ...+.-+|-+|... +++.|...|.+|+++...... +..|
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l-----~p~d-~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~------~~nN 173 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARL-----APTD-WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS------IANN 173 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcc-----CCCC-hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch------hhhh
Confidence 344555677777777777777776 2332 24455667777666 777777777777777765544 6777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHH
Q psy5288 125 IAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKL 182 (186)
Q Consensus 125 lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~ 182 (186)
+|..|.=+ |+++.|..++.++...-..+ ..+..|++.+....|+++.|.++
T Consensus 174 lgms~~L~-gd~~~A~~lll~a~l~~~ad------~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 174 LGMSLLLR-GDLEDAETLLLPAYLSPAAD------SRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHhCCCCc------hHHHHHHHHHHhhcCChHHHHhh
Confidence 77777765 77777777777776643322 25667777777777777777654
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.15 E-value=5.3e-05 Score=68.32 Aligned_cols=130 Identities=10% Similarity=0.054 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc------
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM------ 112 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~------ 112 (186)
.+.+.++...+...+++++|++....+++. .|......|.... +|... +++++.-. +++++....
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~-----~P~~i~~yy~~G~-l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE-----HKKSISALYISGI-LSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCcceehHHHHHH-HHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 344556667888899999999988877765 3444444443333 54433 44444333 444433333
Q ss_pred -------CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 113 -------GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 113 -------~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+++..--..+..+|.||.. +|+.++|+..|++++++.+++ ..+++++|..|... +.++|++++.+
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk-~g~~~ka~~~yer~L~~D~~n------~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAK-LNENKKLKGVWERLVKADRDN------PEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 3333334578899999999 599999999999999997543 47999999999999 99999999876
No 117
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.14 E-value=0.0003 Score=54.78 Aligned_cols=141 Identities=14% Similarity=0.134 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChh
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFI 116 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~ 116 (186)
.+...|..+- .+...|++++|++.|++....+.. ...+......+|.+|.+. ++++|+..+++.++.++...+
T Consensus 31 ~~~~~Y~~A~-~~~~~g~y~~Ai~~f~~l~~~yP~---s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-- 104 (243)
T PRK10866 31 PPSEIYATAQ-QKLQDGNWKQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-- 104 (243)
T ss_pred CHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc--
Confidence 4455666554 445589999999999999887532 234445566889998877 999999999999988887765
Q ss_pred HHHHHHHHHHHHHHHhcC---------------C---HHHHHHHHHHHHHHHhccCChHHHH-----------HHHHHHH
Q psy5288 117 MVAKHHENIAEIYEKELE---------------D---QEKAIDHYQHAADCYAGEENKSSAN-----------KCLIKIA 167 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~~lg---------------~---~~~Ai~~y~kA~~l~~~~~~~~~~~-----------~~~~~la 167 (186)
+..++..+|.++.. ++ + ..+|+..+++.++.||+..-...+. ..-..+|
T Consensus 105 -~~~a~Y~~g~~~~~-~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 105 -IDYVLYMRGLTNMA-LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred -hHHHHHHHHHhhhh-cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778876533 12 1 3578899999999999753222221 2334678
Q ss_pred HHHHhccCHHHHHHHHHhC
Q psy5288 168 NYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 168 ~~y~~~g~~~~A~~~~~~~ 186 (186)
..|.+.|+|.-|+.-|+.|
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v 201 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQM 201 (243)
T ss_pred HHHHHcCchHHHHHHHHHH
Confidence 8899999999999888653
No 118
>KOG3616|consensus
Probab=98.13 E-value=0.00015 Score=63.65 Aligned_cols=104 Identities=18% Similarity=0.253 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHH------HHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-------
Q psy5288 80 GLCFVDAANCYKKS-NPAEAIKAIERA------VEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH------- 145 (186)
Q Consensus 80 a~~~~~a~~~y~~~-~~~~A~~~~~~A------l~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~k------- 145 (186)
+..|.++|.+|.+. ++++|++||++. +++.+ ..-+...-..-..-|..++.. |+++-||.+|-+
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielar-fafp~evv~lee~wg~hl~~~-~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR-FAFPEEVVKLEEAWGDHLEQI-GQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH-hhCcHHHhhHHHHHhHHHHHH-HhHHHHHHHHHHhhhHHHH
Confidence 36677889999888 999999998754 33322 223444444555567777774 899999888744
Q ss_pred ------------HHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 146 ------------AADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 146 ------------A~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
|+.+..+..++.....+|-.++.-|...|+|+.|.++|.+
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHh
Confidence 3334333333334445778888889999999999988864
No 119
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.12 E-value=0.00014 Score=62.53 Aligned_cols=133 Identities=12% Similarity=0.032 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC---C------HHHHHHHHH
Q psy5288 35 KTDEAIDLYVRAGNLFK--LGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS---N------PAEAIKAIE 103 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~--~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~---~------~~~A~~~~~ 103 (186)
.-.+|.++|.++-..+. ..+++..|+.+|++|+++ +|..+ ..+..++.+|... . ...+.+..+
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l-----dP~~a-~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS-----EPDFT-YAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-----CCCcH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 44689999999854432 133488999999999998 66653 2333444444321 1 223334444
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 104 RAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 104 ~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
+++.+-....+ +.++.-+|.++..+ |++++|...+++|+.+.+. ...|..+|.++...|++++|++.|
T Consensus 409 ~a~al~~~~~~----~~~~~ala~~~~~~-g~~~~A~~~l~rAl~L~ps-------~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 409 NIVALPELNVL----PRIYEILAVQALVK-GKTDEAYQAINKAIDLEMS-------WLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred HhhhcccCcCC----hHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 43333212222 35677788888886 9999999999999998641 258899999999999999999999
Q ss_pred Hh
Q psy5288 184 EQ 185 (186)
Q Consensus 184 ~~ 185 (186)
++
T Consensus 477 ~~ 478 (517)
T PRK10153 477 ST 478 (517)
T ss_pred HH
Confidence 76
No 120
>KOG0543|consensus
Probab=98.08 E-value=3.8e-05 Score=62.73 Aligned_cols=97 Identities=22% Similarity=0.177 Sum_probs=73.4
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh---------hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 83 FVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF---------IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 83 ~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~---------~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
..+=|..|.+. ++..|+..|++|+..+.-.... ..--.++.|++.+|.. +++|..|+.+.++++++-++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lK-l~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLK-LKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHh-hhhHHHHHHHHHHHHhcCCC
Confidence 33444444444 7777888888877776522111 1222388999999999 69999999999999998665
Q ss_pred cCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 153 EENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 153 ~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
+ ...+.+-|.++..+|+|+.|+..|+++
T Consensus 290 N------~KALyRrG~A~l~~~e~~~A~~df~ka 317 (397)
T KOG0543|consen 290 N------VKALYRRGQALLALGEYDLARDDFQKA 317 (397)
T ss_pred c------hhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4 378899999999999999999999864
No 121
>KOG3616|consensus
Probab=98.07 E-value=5.2e-05 Score=66.40 Aligned_cols=142 Identities=22% Similarity=0.230 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH------HHHHHHH-------------------HcCChhHHHHHHHHHHHHHhcCCH
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFL------QAGTLHL-------------------KNNNKHDAGLCFVDAANCYKKSNP 95 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~------~a~~~~~-------------------~~~~~~~aa~~~~~a~~~y~~~~~ 95 (186)
++|.++|.+|.+..++++|++||. ++.++.+ ..|..+.+.++|.++-.+-...+.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea 741 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA 741 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence 568888889999999999999985 3444433 112222222222221111110011
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHH------HHHHHHhccCC-------------h
Q psy5288 96 AEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQ------HAADCYAGEEN-------------K 156 (186)
Q Consensus 96 ~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~------kA~~l~~~~~~-------------~ 156 (186)
.--.+-+.+|+.|.....+...+..+|-.++..|.+ .|+++.|-++|. .|+++|.+.+. |
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan-~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~ 820 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYAN-KGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGP 820 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhcc-chhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCc
Confidence 111234567777776666666666777888888887 488887777653 34444444332 1
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 157 SSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 157 ~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
......|+.-++-+.+.|+|.+|..+|
T Consensus 821 e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 821 EATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred hhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 122234444555555566665555443
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.07 E-value=8.7e-05 Score=57.37 Aligned_cols=79 Identities=16% Similarity=0.165 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhc
Q psy5288 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALT 173 (186)
Q Consensus 94 ~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~ 173 (186)
++..|+..++++..+....+. .+..+|.+|.. +|+.+.|-..|.+|+++++... .+..|+|..|.-.
T Consensus 115 ~~~~A~~~~rkA~~l~p~d~~------~~~~lgaaldq-~Gr~~~Ar~ay~qAl~L~~~~p------~~~nNlgms~~L~ 181 (257)
T COG5010 115 NFGEAVSVLRKAARLAPTDWE------AWNLLGAALDQ-LGRFDEARRAYRQALELAPNEP------SIANNLGMSLLLR 181 (257)
T ss_pred chHHHHHHHHHHhccCCCChh------hhhHHHHHHHH-ccChhHHHHHHHHHHHhccCCc------hhhhhHHHHHHHc
Confidence 899999999999998887765 78889999998 6999999999999999988753 6889999999999
Q ss_pred cCHHHHHHHHHh
Q psy5288 174 DHLDKAIKLYEQ 185 (186)
Q Consensus 174 g~~~~A~~~~~~ 185 (186)
||+..|..++.+
T Consensus 182 gd~~~A~~lll~ 193 (257)
T COG5010 182 GDLEDAETLLLP 193 (257)
T ss_pred CCHHHHHHHHHH
Confidence 999999998764
No 123
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.06 E-value=0.00018 Score=59.97 Aligned_cols=133 Identities=11% Similarity=0.045 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHc
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANC-YKKSNPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~-y~~~~~~~A~~~~~~Al~i~~~~ 112 (186)
.+..++-..+.+ |.+....|++++|..+..++.+. .+.....+.-++.. ....+++.|.++++++.+..++.
T Consensus 79 rr~~~~~~~~~~-gl~a~~eGd~~~A~k~l~~~~~~------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~ 151 (398)
T PRK10747 79 RKRRRARKQTEQ-ALLKLAEGDYQQVEKLMTRNADH------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADND 151 (398)
T ss_pred HHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHhc------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc
Confidence 344555555544 45555679999998666654442 22345556667777 45559999999999997544333
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 113 GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 113 ~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.- . .....+.++..+ |++++|+..+++..+..+++ ..++.-++.+|...|++++|++++.+
T Consensus 152 ~~---~--~~l~~a~l~l~~-g~~~~Al~~l~~~~~~~P~~------~~al~ll~~~~~~~gdw~~a~~~l~~ 212 (398)
T PRK10747 152 QL---P--VEITRVRIQLAR-NENHAARHGVDKLLEVAPRH------PEVLRLAEQAYIRTGAWSSLLDILPS 212 (398)
T ss_pred hH---H--HHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 21 1 223348888886 99999999999999987754 26778889999999999999988765
No 124
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=98.04 E-value=0.00022 Score=47.18 Aligned_cols=83 Identities=18% Similarity=0.187 Sum_probs=67.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCChh---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHH
Q psy5288 87 ANCYKKSNPAEAIKAIERAVEIHTDMGRFI---MVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCL 163 (186)
Q Consensus 87 ~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~---~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~ 163 (186)
.......++..|++.+.+..+.....++.. .....+.++|.++.. +|++++|+..+++|+.+.++.++......++
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~~D~~~l~~al 84 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLARENGDRRCLAYAL 84 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 334445589999999999999988887655 666778999999998 5999999999999999999998887776666
Q ss_pred HHHHHHH
Q psy5288 164 IKIANYS 170 (186)
Q Consensus 164 ~~la~~y 170 (186)
.-+..+.
T Consensus 85 ~~~~~l~ 91 (94)
T PF12862_consen 85 SWLANLL 91 (94)
T ss_pred HHHHHHh
Confidence 6655543
No 125
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.00 E-value=7.1e-06 Score=50.22 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=45.8
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 86 AANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 86 a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
.|..+... ++++|+.+|+++++.. +.-..++..+|.++..+ |++++|+.+|++++++.++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~------P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD------PDNPEAWYLLGRILYQQ-GRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS------TTHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcC
Confidence 44555544 8888999888887655 33566888999999985 9999999999999988664
No 126
>PRK15331 chaperone protein SicA; Provisional
Probab=97.98 E-value=7e-05 Score=54.39 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
++..||.+++. +++|++|+..|--|..+-.++. ....+.|.+|..+|+..+|+.+|+
T Consensus 73 Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp------~p~f~agqC~l~l~~~~~A~~~f~ 129 (165)
T PRK15331 73 YTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDY------RPVFFTGQCQLLMRKAAKARQCFE 129 (165)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCC------CccchHHHHHHHhCCHHHHHHHHH
Confidence 45555555555 2555555555555555443221 223445555555555555555554
No 127
>KOG4162|consensus
Probab=97.96 E-value=0.00028 Score=61.74 Aligned_cols=131 Identities=14% Similarity=0.082 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG 113 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~ 113 (186)
-|......+..++..|...+..++|..|..++..+. ...+..|...|.++... ...+|.++|.-|+.+.+..=
T Consensus 645 ~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 645 LWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 466778888889999999999999999999999984 33455666888888765 88999999999987765542
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 114 RFIMVAKHHENIAEIYEKELEDQEKAID--HYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 114 ~~~~~a~~~~~lg~~y~~~lg~~~~Ai~--~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
.+..-+|.++.. +|+.--|.. .+..|+++-+.+ ...|..+|.|+.++|+.++|.++|.
T Consensus 719 ------~s~~Ala~~lle-~G~~~la~~~~~L~dalr~dp~n------~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 719 ------PSMTALAELLLE-LGSPRLAEKRSLLSDALRLDPLN------HEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred ------HHHHHHHHHHHH-hCCcchHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccchHHHHHHHH
Confidence 266779999998 598888888 999999987654 3789999999999999999999996
No 128
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.94 E-value=6.4e-05 Score=62.62 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 117 MVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.-+..+.++|.+|.. +|+|++|+.+|++|+++.++.. .....|.|+|.+|..+|++++|++++++
T Consensus 73 ~~a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~Pd~a---eA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 73 KTAEDAVNLGLSLFS-KGRVKDALAQFETALELNPNPD---EAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345678999999999 4999999999999999976532 2225689999999999999999999976
No 129
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.93 E-value=3e-05 Score=48.38 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=47.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 126 AEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 126 g~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
..+|..+ +++++|+.++++++.+.+.. ...+...|.+|..+|++++|++.|+++
T Consensus 2 ~~~~~~~-~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 2 KQIYLQQ-EDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHHHhC-CCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 5677875 99999999999999997763 368889999999999999999999863
No 130
>KOG3617|consensus
Probab=97.93 E-value=0.00018 Score=63.74 Aligned_cols=147 Identities=20% Similarity=0.291 Sum_probs=86.1
Q ss_pred cccccc-CCCCHHHHHHHHHHHHHHHH------hcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHH
Q psy5288 26 FFSQFT-GGNKTDEAIDLYVRAGNLFK------LGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAE 97 (186)
Q Consensus 26 ~~~~~~-~~~~~~~A~~~y~~ag~~~~------~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~ 97 (186)
||-+++ ..|+.+.|+.+|..|-+-|. .+|+.++|... ....|+. +.+| -++..|... ++.+
T Consensus 917 WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~i-------A~esgd~---AAcY-hlaR~YEn~g~v~~ 985 (1416)
T KOG3617|consen 917 WWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARI-------AEESGDK---AACY-HLARMYENDGDVVK 985 (1416)
T ss_pred HHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHH-------HHhcccH---HHHH-HHHHHhhhhHHHHH
Confidence 443333 33555555555555544332 24444444332 2222222 4455 567777765 7788
Q ss_pred HHHHH------HHHHHHHHHcCChhHHHHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-----------
Q psy5288 98 AIKAI------ERAVEIHTDMGRFIMVAKHH--------ENIAEIYEKELEDQEKAIDHYQHAADCYAG----------- 152 (186)
Q Consensus 98 A~~~~------~~Al~i~~~~~~~~~~a~~~--------~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~----------- 152 (186)
|+.+| ..|+++.++++-.+..++.. ...+..|++..|+.+.|+.+|.+|..+.+.
T Consensus 986 Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~ 1065 (1416)
T KOG3617|consen 986 AVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFS 1065 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccH
Confidence 88766 45566777777666655543 456677777433888999888766554331
Q ss_pred -------cCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 153 -------EENKSSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 153 -------~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
+-++..-+..+...+..+....+|++|.+.+
T Consensus 1066 aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL 1103 (1416)
T KOG3617|consen 1066 ALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLL 1103 (1416)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1111112356677788888888999988765
No 131
>PLN02789 farnesyltranstransferase
Probab=97.92 E-value=0.001 Score=53.85 Aligned_cols=132 Identities=7% Similarity=-0.002 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-C--
Q psy5288 33 GNKTDEAIDLYVRA--------------GNLFKLGK-KWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-N-- 94 (186)
Q Consensus 33 ~~~~~~A~~~y~~a--------------g~~~~~~g-~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~-- 94 (186)
.+.+++|+..+.++ +.++..+| +++++++++.+++... +.. ..++..-+.++... +
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-----pkn-yqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-----PKN-YQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-----Ccc-hHHhHHHHHHHHHcCchh
Confidence 35778888888887 34566677 5789999999988873 322 22354555555544 2
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhc-
Q psy5288 95 PAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALT- 173 (186)
Q Consensus 95 ~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~- 173 (186)
.++++.++.+++++..++-. ++...|.++.. +|+++++++++.+++++.+.+. .+|.+.+.++..+
T Consensus 124 ~~~el~~~~kal~~dpkNy~------AW~~R~w~l~~-l~~~~eeL~~~~~~I~~d~~N~------sAW~~R~~vl~~~~ 190 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYH------AWSHRQWVLRT-LGGWEDELEYCHQLLEEDVRNN------SAWNQRYFVITRSP 190 (320)
T ss_pred hHHHHHHHHHHHHhCcccHH------HHHHHHHHHHH-hhhHHHHHHHHHHHHHHCCCch------hHHHHHHHHHHhcc
Confidence 36789999999877765533 78889999998 6999999999999999866542 5777777777655
Q ss_pred --cCH----HHHHHHH
Q psy5288 174 --DHL----DKAIKLY 183 (186)
Q Consensus 174 --g~~----~~A~~~~ 183 (186)
|.+ ++++++.
T Consensus 191 ~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 191 LLGGLEAMRDSELKYT 206 (320)
T ss_pred ccccccccHHHHHHHH
Confidence 333 3556554
No 132
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.88 E-value=0.00062 Score=63.17 Aligned_cols=138 Identities=11% Similarity=0.149 Sum_probs=69.4
Q ss_pred CCCCHHHHHHHHHHH---------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CH
Q psy5288 32 GGNKTDEAIDLYVRA---------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NP 95 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a---------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~ 95 (186)
+.|++++|.+.|..+ ...|...|++++|.+.|.+....- -.|+ ...|..+...|-+. ++
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G---v~PD--~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG---VKPD--EVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHhCCCH
Confidence 456666666666555 234556666777666666554320 0111 22344444444443 56
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccC
Q psy5288 96 AEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDH 175 (186)
Q Consensus 96 ~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~ 175 (186)
++|.+.+++..+. |-.. -..++..+...|... |++++|+..|++.... +..+. ..+|..+...|.+.|+
T Consensus 666 eeA~~l~~eM~k~----G~~p-d~~tynsLI~ay~k~-G~~eeA~~lf~eM~~~----g~~Pd-vvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 666 DKAFEILQDARKQ----GIKL-GTVSYSSLMGACSNA-KNWKKALELYEDIKSI----KLRPT-VSTMNALITALCEGNQ 734 (1060)
T ss_pred HHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHCCC
Confidence 6666665554321 1111 122455555566653 6666666666654332 11111 1355566666666666
Q ss_pred HHHHHHHHHh
Q psy5288 176 LDKAIKLYEQ 185 (186)
Q Consensus 176 ~~~A~~~~~~ 185 (186)
+++|+++|++
T Consensus 735 ~eeAlelf~e 744 (1060)
T PLN03218 735 LPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHH
Confidence 6666666553
No 133
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.87 E-value=0.00059 Score=47.29 Aligned_cols=99 Identities=14% Similarity=0.034 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy5288 43 YVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKH 121 (186)
Q Consensus 43 y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~ 121 (186)
..+.+.++...|+.++|+.+|.+++.. .+ +......++..+|.++..+ ++++|+..+++++.-+..... ....
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~--gL-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~---~~~l 77 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAA--GL-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL---NAAL 77 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cHHH
Confidence 456678899999999999999999884 12 2233456788999999987 999999999998764433221 2234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAAD 148 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~ 148 (186)
...++.++.. +|++++|+.++..++.
T Consensus 78 ~~f~Al~L~~-~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 78 RVFLALALYN-LGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 4557788888 5999999999988775
No 134
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.86 E-value=4.2e-05 Score=41.30 Aligned_cols=33 Identities=33% Similarity=0.481 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE 154 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~ 154 (186)
++.+||.+|..+ |++++|+++|++++.+..+..
T Consensus 1 al~~Lg~~~~~~-g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQ-GDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHC-T-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHc-CCHHHHHHHHHHHHHhccccc
Confidence 467899999995 999999999999998866543
No 135
>KOG3060|consensus
Probab=97.86 E-value=0.00044 Score=53.56 Aligned_cols=109 Identities=17% Similarity=0.111 Sum_probs=85.3
Q ss_pred CCCCHHHHHHHHHHHHH--------------HHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHH
Q psy5288 32 GGNKTDEAIDLYVRAGN--------------LFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPA 96 (186)
Q Consensus 32 ~~~~~~~A~~~y~~ag~--------------~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~ 96 (186)
..+.|++|+++|+.... +.+.+|+..+|++-...-++.+ ..-..++.+++++|... ++.
T Consensus 98 a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F------~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF------MNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh------cCcHHHHHHHHHHHHhHhHHH
Confidence 55899999999999843 5667899999988888777765 33346788999999887 999
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhc
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKE--LEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~--lg~~~~Ai~~y~kA~~l~~~ 152 (186)
+|.-||++.+-+-+-+ .-++..+|.++..+ ..+++.|..+|.+|+++.++
T Consensus 172 kA~fClEE~ll~~P~n------~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 172 KAAFCLEELLLIQPFN------PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 9999999987665443 23667777776653 24688999999999999873
No 136
>KOG1128|consensus
Probab=97.85 E-value=0.00012 Score=63.76 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh
Q psy5288 93 SNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSAL 172 (186)
Q Consensus 93 ~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~ 172 (186)
.++.++.++++.++++.... ..+++..|-+..+ +++++.|.++|..++.+-+.. ...|+|++..|.+
T Consensus 499 ~~fs~~~~hle~sl~~nplq------~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~------~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQ------LGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDN------AEAWNNLSTAYIR 565 (777)
T ss_pred hhHHHHHHHHHHHhhcCccc------hhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCc------hhhhhhhhHHHHH
Confidence 37888999999988886544 3378888888887 688999999998888886654 3678888888888
Q ss_pred ccCHHHHHHHHHh
Q psy5288 173 TDHLDKAIKLYEQ 185 (186)
Q Consensus 173 ~g~~~~A~~~~~~ 185 (186)
.|+-.+|-..+.+
T Consensus 566 ~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 566 LKKKKRAFRKLKE 578 (777)
T ss_pred HhhhHHHHHHHHH
Confidence 8888887776654
No 137
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.79 E-value=0.00024 Score=55.39 Aligned_cols=98 Identities=18% Similarity=0.169 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHH
Q psy5288 82 CFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANK 161 (186)
Q Consensus 82 ~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~ 161 (186)
.|..+-..|...++..|...|+.=++-|...- -+++.++=||+++..+ |+|+.|...|..+..=+++.. .+.+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~---~~~nA~yWLGe~~y~q-g~y~~Aa~~f~~~~k~~P~s~---KApd 216 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST---YTPNAYYWLGESLYAQ-GDYEDAAYIFARVVKDYPKSP---KAPD 216 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---ccchhHHHHHHHHHhc-ccchHHHHHHHHHHHhCCCCC---CChH
Confidence 57667777777788888888877655554432 3455677789998886 999999999988888777643 3457
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 162 CLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 162 ~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
.+.+||.+..++|+.++|..+|++|
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8889999999999999999888764
No 138
>KOG1127|consensus
Probab=97.76 E-value=0.00035 Score=62.90 Aligned_cols=119 Identities=13% Similarity=0.148 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH--------------HHHcCChhHHH
Q psy5288 55 KWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEI--------------HTDMGRFIMVA 119 (186)
Q Consensus 55 ~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i--------------~~~~~~~~~~a 119 (186)
+...|...+.+++.+. ..-+..|.-+|.+|+.. +...|..||++|-++ +....+.+.+-
T Consensus 473 ~~~~al~ali~alrld------~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD------VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred hHHHHHHHHHHHHhcc------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHH
Confidence 4566666666666652 23356677788888877 777888888888776 23333333333
Q ss_pred HHH----------------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 120 KHH----------------ENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 120 ~~~----------------~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
.++ ...|..|.+- ++..+|+..++.|+...+++ ..+|..+|+.|...|+|.-|+++|
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea-~n~h~aV~~fQsALR~dPkD------~n~W~gLGeAY~~sGry~~AlKvF 619 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRGPYYLEA-HNLHGAVCEFQSALRTDPKD------YNLWLGLGEAYPESGRYSHALKVF 619 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhccccccCc-cchhhHHHHHHHHhcCCchh------HHHHHHHHHHHHhcCceehHHHhh
Confidence 333 2344455553 88999999999999997764 479999999999999999999999
Q ss_pred HhC
Q psy5288 184 EQL 186 (186)
Q Consensus 184 ~~~ 186 (186)
+++
T Consensus 620 ~kA 622 (1238)
T KOG1127|consen 620 TKA 622 (1238)
T ss_pred hhh
Confidence 764
No 139
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.76 E-value=0.00066 Score=56.71 Aligned_cols=132 Identities=11% Similarity=0.050 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG 113 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~ 113 (186)
+..++-....+ |.+-...|+++.|.+...++.+. .+ .....+.-++.+.... +++.|..+++++.+.....+
T Consensus 80 ~~~k~~~~~~~-glla~~~g~~~~A~~~l~~~~~~-----~~-~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~ 152 (409)
T TIGR00540 80 KRRKAQKQTEE-ALLKLAEGDYAKAEKLIAKNADH-----AA-EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN 152 (409)
T ss_pred HHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHhhc-----CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc
Confidence 44455555444 44555689999999988777664 22 2244555677777665 99999999999875543332
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 114 RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 114 ~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
- . +....+.++... |++++|...+++..+..+++ ..++.-++.+|...|++++|.+.+.+
T Consensus 153 l---~--~~~~~a~l~l~~-~~~~~Al~~l~~l~~~~P~~------~~~l~ll~~~~~~~~d~~~a~~~l~~ 212 (409)
T TIGR00540 153 I---L--VEIARTRILLAQ-NELHAARHGVDKLLEMAPRH------KEVLKLAEEAYIRSGAWQALDDIIDN 212 (409)
T ss_pred h---H--HHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1 1 233348888885 99999999999999987654 25778889999999999999988765
No 140
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.75 E-value=0.0016 Score=60.45 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++..+...|... |++++|.+.+++..+. +.... ..++..+...|.+.|++++|.++|++
T Consensus 651 TynsLI~a~~k~-G~~eeA~~l~~eM~k~----G~~pd-~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 651 FFSALVDVAGHA-GDLDKAFEILQDARKQ----GIKLG-TVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 555666667774 8888888888887653 21112 25788888899999999999998875
No 141
>KOG4555|consensus
Probab=97.74 E-value=0.0038 Score=43.88 Aligned_cols=125 Identities=16% Similarity=0.126 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChh
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFI 116 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~ 116 (186)
++...++.-|......|+.+.|++.|.+++.+. | .-+++|.+=++.++-. ++++|+.-+.+|+++.-.. ..
T Consensus 41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~-----P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--tr 112 (175)
T KOG4555|consen 41 KASRELELKAIALAEAGDLDGALELFGQALCLA-----P-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TR 112 (175)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhc-----c-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--ch
Confidence 444456666788889999999999999999984 2 3356788888888866 8999999999999887544 44
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-------cCChHHHHHHHHHHHHHHHh
Q psy5288 117 MVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG-------EENKSSANKCLIKIANYSAL 172 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~-------~~~~~~~~~~~~~la~~y~~ 172 (186)
.+-..++.=|.+|.-+ |+-+.|..-|+.|.++=.+ .-+| .+.-|...++.++.+
T Consensus 113 tacqa~vQRg~lyRl~-g~dd~AR~DFe~AA~LGS~FAr~QLV~lNP-YAAlCN~MLa~~f~q 173 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLL-GNDDAARADFEAAAQLGSKFAREQLVELNP-YAALCNQMLADAFDQ 173 (175)
T ss_pred HHHHHHHHHHHHHHHh-CchHHHHHhHHHHHHhCCHHHHHHHHhcCh-HHHHHHHHHHHHHHh
Confidence 5566788899999994 9999999999999987221 0122 233566777766654
No 142
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.73 E-value=0.00055 Score=60.99 Aligned_cols=139 Identities=9% Similarity=-0.062 Sum_probs=83.6
Q ss_pred CCCCHHHHHHHHHHH-----------HHHHHhcCCHHHHHHHHHHHHHH---------------HHHcCChhHHHHHHH-
Q psy5288 32 GGNKTDEAIDLYVRA-----------GNLFKLGKKWNDGGNAFLQAGTL---------------HLKNNNKHDAGLCFV- 84 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a-----------g~~~~~~g~~~~A~~~y~~a~~~---------------~~~~~~~~~aa~~~~- 84 (186)
+.|++++|...|.+. ...|...|+.++|++.|.+..+. +-+.|..+.+-..+.
T Consensus 372 k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 372 KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred HCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 456777777776543 66677788888888887776542 111222222222222
Q ss_pred ---------------HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy5288 85 ---------------DAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAAD 148 (186)
Q Consensus 85 ---------------~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~ 148 (186)
-+..+|-+. ++++|.+.++ +.+..+. ..++..+...+... |+.+.|...+++.++
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~-------~~~~~p~-~~~~~~Ll~a~~~~-g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR-------RAPFKPT-VNMWAALLTACRIH-KNLELGRLAAEKLYG 522 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH-------HCCCCCC-HHHHHHHHHHHHHc-CCcHHHHHHHHHHhC
Confidence 222222222 3444444333 2222111 23466666677775 899999988888877
Q ss_pred HHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 149 CYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 149 l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+.+.. ..+|..+.++|.+.|++++|.+++++
T Consensus 523 ~~p~~------~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 523 MGPEK------LNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred CCCCC------CcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 65432 24678889999999999999999875
No 143
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.73 E-value=9.4e-05 Score=39.10 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
|.++.++|.+|..+ |++++|+.+|++|+++.++
T Consensus 1 a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQL-GDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHh-CCchHHHHHHHHHHHHCcC
Confidence 46789999999995 9999999999999998664
No 144
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.73 E-value=0.0011 Score=50.53 Aligned_cols=98 Identities=10% Similarity=0.043 Sum_probs=74.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-------CChhHHHHHH
Q psy5288 52 LGKKWNDGGNAFLQAGTLHLKNN-NKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM-------GRFIMVAKHH 122 (186)
Q Consensus 52 ~~g~~~~A~~~y~~a~~~~~~~~-~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~-------~~~~~~a~~~ 122 (186)
....+++|++.|.-|+-+++..+ ++...|..+.+++=+|+.. +.+....++++|++.+.+. ........+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 44568888888888888887555 5556788888999999877 6666666666776665432 2233556788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy5288 123 ENIAEIYEKELEDQEKAIDHYQHAADCY 150 (186)
Q Consensus 123 ~~lg~~y~~~lg~~~~Ai~~y~kA~~l~ 150 (186)
.-+|.++.. +|++++|+.+|.+.+.--
T Consensus 169 YLigeL~rr-lg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 169 YLIGELNRR-LGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHcCC
Confidence 899999998 799999999999998853
No 145
>KOG0550|consensus
Probab=97.71 E-value=0.0002 Score=58.83 Aligned_cols=126 Identities=20% Similarity=0.175 Sum_probs=79.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH---------HHH-HHHhcCCHHHHHHHHHHHHHHHHHcCChhH
Q psy5288 48 NLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFV---------DAA-NCYKKSNPAEAIKAIERAVEIHTDMGRFIM 117 (186)
Q Consensus 48 ~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~---------~a~-~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~ 117 (186)
.++...++.+.|+..|++++.+-...- .+...+. +-| ..|...++..|.++|..|+.|.+.+ ..-
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~ldpdh~---~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n--~~~ 285 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRLDPDHQ---KSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN--KKT 285 (486)
T ss_pred cccccccchHHHHHHHhhhhccChhhh---hHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc--cch
Confidence 345566777788888877777622110 1111111 111 2222336777888888887776664 334
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+.+|.+.|.+... ||+..+||.-.+.|+.|.+. ....+..-|+++..++++++|.+.|++
T Consensus 286 naklY~nra~v~~r-Lgrl~eaisdc~~Al~iD~s------yikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 286 NAKLYGNRALVNIR-LGRLREAISDCNEALKIDSS------YIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred hHHHHHHhHhhhcc-cCCchhhhhhhhhhhhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888777 68888888888888877432 235667778888888888888877765
No 146
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.70 E-value=0.00011 Score=38.62 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
|.++..+|.+|..+ |++++|+.+|++++.+.++
T Consensus 1 a~~~~~lg~~~~~~-~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQL-GNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHCcC
Confidence 46788999999995 9999999999999999764
No 147
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.70 E-value=0.0012 Score=59.96 Aligned_cols=115 Identities=11% Similarity=0.131 Sum_probs=79.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy5288 45 RAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHEN 124 (186)
Q Consensus 45 ~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~ 124 (186)
..|.+|..+|++++|...|++++++ ++ .-+.++.+.|..|...+.++|++++.+|+..+.+...+..+-.++.+
T Consensus 121 ~LA~~Ydk~g~~~ka~~~yer~L~~-----D~-~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k 194 (906)
T PRK14720 121 TLAEAYAKLNENKKLKGVWERLVKA-----DR-DNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEIWSK 194 (906)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhc-----Cc-ccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 3466777888888888888888887 33 33456778888887668888888888888877655555544443322
Q ss_pred ----------------------HH------------HHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Q psy5288 125 ----------------------IA------------EIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYS 170 (186)
Q Consensus 125 ----------------------lg------------~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y 170 (186)
+| ..|.. ..++++++..++.++++.+++. .....|+.+|
T Consensus 195 ~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~-~~~~~~~i~iLK~iL~~~~~n~------~a~~~l~~~y 267 (906)
T PRK14720 195 LVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA-LEDWDEVIYILKKILEHDNKNN------KAREELIRFY 267 (906)
T ss_pred HHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhcCCcch------hhHHHHHHHH
Confidence 22 44555 3678888888888888766542 4567788887
Q ss_pred Hh
Q psy5288 171 AL 172 (186)
Q Consensus 171 ~~ 172 (186)
..
T Consensus 268 ~~ 269 (906)
T PRK14720 268 KE 269 (906)
T ss_pred HH
Confidence 63
No 148
>KOG2376|consensus
Probab=97.69 E-value=0.0059 Score=52.43 Aligned_cols=67 Identities=18% Similarity=0.140 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc---------CChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE---------ENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~---------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.-..++|.+-++... |+|++|++.+++|+++.++. +.......+...++-|+-..|+..+|...|..
T Consensus 174 syel~yN~Ac~~i~~-gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 174 SYELLYNTACILIEN-GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred hHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 344567788888885 99999999999998887641 12234446888999999999999999998864
No 149
>KOG1156|consensus
Probab=97.67 E-value=0.00073 Score=58.28 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=93.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy5288 48 NLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIA 126 (186)
Q Consensus 48 ~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg 126 (186)
.....+|+-++|.++...++.. -.....||+-.|-+++.. +|++|+.||+.|+.+-+++-. ++..++
T Consensus 49 L~L~~lg~~~ea~~~vr~glr~------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~q------ilrDls 116 (700)
T KOG1156|consen 49 LTLNCLGKKEEAYELVRLGLRN------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQ------ILRDLS 116 (700)
T ss_pred chhhcccchHHHHHHHHHHhcc------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHH------HHHHHH
Confidence 3455677888888877666662 233457888889998877 999999999999988776643 788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 127 EIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 127 ~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
.+-.+ +++++-....-.+-+++.+.. ...|+.++..+...|+|..|.+..+
T Consensus 117 lLQ~Q-mRd~~~~~~tr~~LLql~~~~------ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 117 LLQIQ-MRDYEGYLETRNQLLQLRPSQ------RASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred HHHHH-HHhhhhHHHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777 599999999988888886543 3688899999999999999998765
No 150
>KOG0550|consensus
Probab=97.66 E-value=0.00057 Score=56.26 Aligned_cols=112 Identities=21% Similarity=0.205 Sum_probs=88.6
Q ss_pred CCCCHHHHHHHHHHH--------------------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy5288 32 GGNKTDEAIDLYVRA--------------------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVD 85 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~ 85 (186)
-.++.+.++..|+++ |+-..+.|++..|.++|..++.+-.. +...-+.+|.+
T Consensus 215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--n~~~naklY~n 292 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--NKKTNAKLYGN 292 (486)
T ss_pred cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--ccchhHHHHHH
Confidence 346777778877777 45566789999999999999999433 22344677888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 86 AANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 86 a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
-+.+...+ +..+|+.-+..|+.|...- ...+..-|.++.. |+++++|++.|++|+..-..
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~iD~sy------ikall~ra~c~l~-le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALKIDSSY------IKALLRRANCHLA-LEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhhcCHHH------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccc
Confidence 88888877 8999999999998876433 3467788999998 79999999999999997544
No 151
>KOG4555|consensus
Probab=97.66 E-value=0.0019 Score=45.36 Aligned_cols=83 Identities=18% Similarity=0.204 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhc
Q psy5288 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALT 173 (186)
Q Consensus 94 ~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~ 173 (186)
+.+.|++.|.+|+.+..+. +..|++=+..+.-+ |+.++|+.-+++|+++.... ....-..+..-|.+|..+
T Consensus 58 ~Ld~AlE~F~qal~l~P~r------aSayNNRAQa~RLq-~~~e~ALdDLn~AleLag~~--trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 58 DLDGALELFGQALCLAPER------ASAYNNRAQALRLQ-GDDEEALDDLNKALELAGDQ--TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred chHHHHHHHHHHHHhcccc------hHhhccHHHHHHHc-CChHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHh
Confidence 7899999999999998766 44899999999986 99999999999999996443 345557889999999999
Q ss_pred cCHHHHHHHHHh
Q psy5288 174 DHLDKAIKLYEQ 185 (186)
Q Consensus 174 g~~~~A~~~~~~ 185 (186)
|+-+.|..-|+.
T Consensus 129 g~dd~AR~DFe~ 140 (175)
T KOG4555|consen 129 GNDDAARADFEA 140 (175)
T ss_pred CchHHHHHhHHH
Confidence 999999988864
No 152
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.61 E-value=0.001 Score=59.30 Aligned_cols=142 Identities=7% Similarity=0.082 Sum_probs=76.6
Q ss_pred CCCCHHHHHHHHHH-----------HHHHHHhcCCHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHhcC-CHHHH
Q psy5288 32 GGNKTDEAIDLYVR-----------AGNLFKLGKKWNDGGNAFLQAGTLHLKNN-NKHDAGLCFVDAANCYKKS-NPAEA 98 (186)
Q Consensus 32 ~~~~~~~A~~~y~~-----------ag~~~~~~g~~~~A~~~y~~a~~~~~~~~-~~~~aa~~~~~a~~~y~~~-~~~~A 98 (186)
+.|++++|...|.. ....|...|++++|.+.|.+..+. | .|+. ..|..+...|-+. ++++|
T Consensus 271 k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~----g~~pd~--~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS----GVSIDQ--FTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred HCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCCH--HHHHHHHHHHHhccchHHH
Confidence 45677777777654 355677788888888887766432 1 1111 2333444444333 44444
Q ss_pred HHHHHHHHH---------------HHHHcCChhHHH-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 99 IKAIERAVE---------------IHTDMGRFIMVA-----------KHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 99 ~~~~~~Al~---------------i~~~~~~~~~~a-----------~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
.+.+....+ ++.+.|+.+.+- .+|+.+...|-.. |+.++|++.|++....
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~-G~~~~A~~lf~~M~~~--- 420 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH-GRGTKAVEMFERMIAE--- 420 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc-CCHHHHHHHHHHHHHh---
Confidence 444333222 122222222222 2455666666664 7777777777775542
Q ss_pred cCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 153 EENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 153 ~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+..+. ..++..+...+...|+.++|.++|+.
T Consensus 421 -g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 421 -GVAPN-HVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred -CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 11111 24566667777777777777777764
No 153
>KOG4234|consensus
Probab=97.61 E-value=0.0004 Score=52.20 Aligned_cols=89 Identities=20% Similarity=0.185 Sum_probs=75.3
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Q psy5288 90 YKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANY 169 (186)
Q Consensus 90 y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~ 169 (186)
|...++.+|..-|..|+++...... .....+|.+-|.+... |+.++.||.-..+|+++.+.. ...+.+-|.+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iK-l~k~e~aI~dcsKaiel~pty------~kAl~RRAea 177 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIK-LRKWESAIEDCSKAIELNPTY------EKALERRAEA 177 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHH-hhhHHHHHHHHHhhHhcCchh------HHHHHHHHHH
Confidence 3444899999999999999877654 5667788899999998 699999999999999997643 3677788999
Q ss_pred HHhccCHHHHHHHHHhC
Q psy5288 170 SALTDHLDKAIKLYEQL 186 (186)
Q Consensus 170 y~~~g~~~~A~~~~~~~ 186 (186)
|.+..+|++|++-|.+|
T Consensus 178 yek~ek~eealeDyKki 194 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKI 194 (271)
T ss_pred HHhhhhHHHHHHHHHHH
Confidence 99999999999998764
No 154
>KOG1174|consensus
Probab=97.60 E-value=0.0051 Score=50.99 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=90.4
Q ss_pred cCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CH
Q psy5288 31 TGGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NP 95 (186)
Q Consensus 31 ~~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~ 95 (186)
|-+.++..|+.+-.++ |++...+|++++|+-.|..|..+.. .-..+|.-+..+|... .+
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap------~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP------YRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhhchH
Confidence 3445667776666655 6677888888888888877766531 1123333333333322 22
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHH
Q psy5288 96 ------------------------------------AEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKA 139 (186)
Q Consensus 96 ------------------------------------~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~A 139 (186)
++|..++++++.+.+. -...-+.++.+..-. |.+..+
T Consensus 385 kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~------Y~~AV~~~AEL~~~E-g~~~D~ 457 (564)
T KOG1174|consen 385 KEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI------YTPAVNLIAELCQVE-GPTKDI 457 (564)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc------cHHHHHHHHHHHHhh-CccchH
Confidence 3455555555443211 112336678888876 999999
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 140 IDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 140 i~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
|..+++++..+++. .....||.++.....+++|+++|..
T Consensus 458 i~LLe~~L~~~~D~-------~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 458 IKLLEKHLIIFPDV-------NLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHHhhcccc-------HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999998864 4668999999999999999999864
No 155
>PLN03077 Protein ECB2; Provisional
Probab=97.59 E-value=0.0072 Score=55.15 Aligned_cols=57 Identities=7% Similarity=0.135 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 125 IAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 125 lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
+-..+... |.+++|..+|++..+-+.-.. . ..+|..+...|.+.|++++|.+.++++
T Consensus 595 ll~a~~~~-g~v~ea~~~f~~M~~~~gi~P---~-~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 595 LLCACSRS-GMVTQGLEYFHSMEEKYSITP---N-LKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhCCCC---c-hHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 33445553 788888888877764432211 1 257788888899999999999888763
No 156
>KOG1128|consensus
Probab=97.57 E-value=0.00029 Score=61.42 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHH--------HHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q psy5288 36 TDEAIDLYVRAGN--------LFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAV 106 (186)
Q Consensus 36 ~~~A~~~y~~ag~--------~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al 106 (186)
|++|.++.+.... ...+.++|+++..+++.++++. + .....|...|-+..++ +++.|+.+|...+
T Consensus 473 yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-----p-lq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN-----P-LQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC-----c-cchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 4566666554421 1334678999999999998883 3 3345566889898887 8899999999988
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 107 EIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 107 ~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
.+-.... ..++|++..|.. +++-.+|...+++|+....+. -.+|.|--.+.++.|.+++|++.+.++
T Consensus 547 tL~Pd~~------eaWnNls~ayi~-~~~k~ra~~~l~EAlKcn~~~------w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 547 TLEPDNA------EAWNNLSTAYIR-LKKKKRAFRKLKEALKCNYQH------WQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hcCCCch------hhhhhhhHHHHH-HhhhHHHHHHHHHHhhcCCCC------CeeeechhhhhhhcccHHHHHHHHHHH
Confidence 7765553 489999999999 499999999999999975221 257778888999999999999998763
No 157
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.57 E-value=0.00027 Score=37.20 Aligned_cols=32 Identities=31% Similarity=0.506 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~ 151 (186)
+.++..+|.+|.. +|++++|+.+|++++++.+
T Consensus 1 a~~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQ-LGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Confidence 4578999999999 5999999999999999876
No 158
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.002 Score=50.96 Aligned_cols=128 Identities=16% Similarity=0.136 Sum_probs=93.0
Q ss_pred hHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy5288 4 NEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCF 83 (186)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~ 83 (186)
++++.++++...+..+. . +.+ =++-+.-.|.+|...|+++.|...|.+|.++. ++.. ..+
T Consensus 134 ~~~~~~~l~a~Le~~L~---~----------nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-----g~n~-~~~ 193 (287)
T COG4235 134 AEQEMEALIARLETHLQ---Q----------NPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-----GDNP-EIL 193 (287)
T ss_pred CcccHHHHHHHHHHHHH---h----------CCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-----CCCH-HHH
Confidence 55778888888888888 1 111 23445667889999999999999999999983 2222 233
Q ss_pred HHHHHHHhcC----CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHH
Q psy5288 84 VDAANCYKKS----NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSS 158 (186)
Q Consensus 84 ~~a~~~y~~~----~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~ 158 (186)
.-+++++... ...++...+++++.+-..+ .....-||..+..+ |+|.+|+..++.-++..+.+..+..
T Consensus 194 ~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~------iral~lLA~~afe~-g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 194 LGLAEALYYQAGQQMTAKARALLRQALALDPAN------IRALSLLAFAAFEQ-GDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcCCCCCchHH
Confidence 3445444332 5678999999998765444 23566688888886 9999999999999999887654433
No 159
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.55 E-value=0.00074 Score=56.44 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHH--HHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDA--GLCFVDAANCYKKS-NPAEAIKAIERAVEI 108 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~a--a~~~~~a~~~y~~~-~~~~A~~~~~~Al~i 108 (186)
..-...+.+.|.++...|++++|+.+|.+++++ +|... ..+|.++|-+|..+ ++++|+.++++|+++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345777888888888888888888888888887 66654 25677888888777 888888888888876
No 160
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.55 E-value=0.0029 Score=41.81 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=63.4
Q ss_pred hcCCHHHHHHHHHHHHHHHHHcCChh---HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy5288 52 LGKKWNDGGNAFLQAGTLHLKNNNKH---DAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAE 127 (186)
Q Consensus 52 ~~g~~~~A~~~y~~a~~~~~~~~~~~---~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~ 127 (186)
+.|++..|.+.+.+..+.....+... ....+..+++.++... ++++|+..+++|+++.++.+|....+.++.-+..
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~ 89 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLAN 89 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 46788888888888888877655544 4455566788887776 9999999999999999999999988888887777
Q ss_pred HHH
Q psy5288 128 IYE 130 (186)
Q Consensus 128 ~y~ 130 (186)
+..
T Consensus 90 l~~ 92 (94)
T PF12862_consen 90 LLK 92 (94)
T ss_pred Hhh
Confidence 643
No 161
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=97.54 E-value=0.0022 Score=50.00 Aligned_cols=87 Identities=22% Similarity=0.225 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccC
Q psy5288 96 AEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDH 175 (186)
Q Consensus 96 ~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~ 175 (186)
...++.+.+|.+.++..+.......+...+|.-|.. +|++++|+.+|+.+...+++++.......++..+..++..+|+
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~-~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFR-LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 567899999999999999999999999999999999 5999999999999999999999888888999999999999999
Q ss_pred HHHHHHHH
Q psy5288 176 LDKAIKLY 183 (186)
Q Consensus 176 ~~~A~~~~ 183 (186)
.+..+.+.
T Consensus 234 ~~~~l~~~ 241 (247)
T PF11817_consen 234 VEDYLTTS 241 (247)
T ss_pred HHHHHHHH
Confidence 99888764
No 162
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.53 E-value=0.01 Score=42.81 Aligned_cols=120 Identities=16% Similarity=0.196 Sum_probs=63.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCCh--hHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy5288 49 LFKLGKKWNDGGNAFLQAGTLHLKNNNK--HDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENI 125 (186)
Q Consensus 49 ~~~~~g~~~~A~~~y~~a~~~~~~~~~~--~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~l 125 (186)
++...|+++.|..+|.++..+ ++ ......+...+..+... +++.|+..+.+++.+.... ....+..+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~ 208 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-----DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNL 208 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-----CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHh
Confidence 455566666666666665331 11 12222222223323222 5666666666666655543 23355666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 126 AEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 126 g~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+..+... +++++|+..+.+++...+. ....+..++..+...++++++...+.+
T Consensus 209 ~~~~~~~-~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (291)
T COG0457 209 GLLYLKL-GKYEEALEYYEKALELDPD------NAEALYNLALLLLELGRYEEALEALEK 261 (291)
T ss_pred hHHHHHc-ccHHHHHHHHHHHHhhCcc------cHHHHhhHHHHHHHcCCHHHHHHHHHH
Confidence 6666663 6677777777777766554 123445555555555556666655543
No 163
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=97.48 E-value=0.032 Score=43.87 Aligned_cols=150 Identities=18% Similarity=0.120 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHH
Q psy5288 33 GNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS--NPAEAIKAIERAVEIHT 110 (186)
Q Consensus 33 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~--~~~~A~~~~~~Al~i~~ 110 (186)
+.+|++|+++....+..+...|++.-|.+.-.-.++++.+.+.+.... ...++++++... .-.+-..+..+|+.-.+
T Consensus 3 ~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~-~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~ 81 (260)
T PF04190_consen 3 QKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE-SIARLIELISLFPPEEPERKKFIKAAIKWSK 81 (260)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH-HHHHHHHHHHHS-TT-TTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHc
Confidence 469999999999999999999999999999999999999876555443 235777777765 22245567777777775
Q ss_pred HcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-----------HHHHHhccCChHHHHHHHHHHHHHHHhccCHHHH
Q psy5288 111 DMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH-----------AADCYAGEENKSSANKCLIKIANYSALTDHLDKA 179 (186)
Q Consensus 111 ~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~k-----------A~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A 179 (186)
..+.+.+-...+..+|..|.+. +++.+|..+|-. .+......+.+....-...+...-|..+++..-|
T Consensus 82 ~~~~~~Gdp~LH~~~a~~~~~e-~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A 160 (260)
T PF04190_consen 82 FGSYKFGDPELHHLLAEKLWKE-GNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDA 160 (260)
T ss_dssp TSS-TT--HHHHHHHHHHHHHT-T-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhh-ccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHH
Confidence 5566678888999999999997 999999999721 1111222344444444555666668888999988
Q ss_pred HHHHH
Q psy5288 180 IKLYE 184 (186)
Q Consensus 180 ~~~~~ 184 (186)
...++
T Consensus 161 ~~~~~ 165 (260)
T PF04190_consen 161 NELFD 165 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 164
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.48 E-value=0.00013 Score=38.90 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=29.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHH
Q psy5288 142 HYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIK 181 (186)
Q Consensus 142 ~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~ 181 (186)
+|++|+++.+++ ...|.++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n------~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN------AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC------HHHHHHHHHHHHHCcCHHhhcC
Confidence 488999998865 4799999999999999999974
No 165
>KOG4340|consensus
Probab=97.46 E-value=0.0019 Score=51.47 Aligned_cols=127 Identities=18% Similarity=0.191 Sum_probs=76.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHH----------HHHHH----HHHc
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIE----------RAVEI----HTDM 112 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~----------~Al~i----~~~~ 112 (186)
|-+|....+|..|++||.+...++.+. +---+.-+-.+|....+..|++... +++.+ .-..
T Consensus 51 gyCYY~~Q~f~~AA~CYeQL~ql~P~~-----~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse 125 (459)
T KOG4340|consen 51 GYCYYRLQEFALAAECYEQLGQLHPEL-----EQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSE 125 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChHH-----HHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Confidence 557888888999999999888875332 2111112222232222222222211 11111 0011
Q ss_pred CCh------------hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHH
Q psy5288 113 GRF------------IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAI 180 (186)
Q Consensus 113 ~~~------------~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~ 180 (186)
++. ...|....+.|-+..+. |+|+.|++-|+.|++. .|-. .-.-.+++.+..+.|+|..|+
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllyke-gqyEaAvqkFqaAlqv---sGyq---pllAYniALaHy~~~qyasAL 198 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKE-GQYEAAVQKFQAALQV---SGYQ---PLLAYNLALAHYSSRQYASAL 198 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeecc-ccHHHHHHHHHHHHhh---cCCC---chhHHHHHHHHHhhhhHHHHH
Confidence 111 13345667777776765 9999999999999997 3322 134478899999999999999
Q ss_pred HHHHh
Q psy5288 181 KLYEQ 185 (186)
Q Consensus 181 ~~~~~ 185 (186)
++-.+
T Consensus 199 k~iSE 203 (459)
T KOG4340|consen 199 KHISE 203 (459)
T ss_pred HHHHH
Confidence 88654
No 166
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.43 E-value=0.026 Score=41.75 Aligned_cols=121 Identities=15% Similarity=0.051 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHH
Q psy5288 61 NAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKA 139 (186)
Q Consensus 61 ~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~A 139 (186)
+-.+.-++-++...-.......+..+|..|.+. +.++|+++|.++.+. .-.+......+.++-++... .+++..+
T Consensus 17 ~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~~~~~id~~l~~irv~i~-~~d~~~v 92 (177)
T PF10602_consen 17 EKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDY---CTSPGHKIDMCLNVIRVAIF-FGDWSHV 92 (177)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHH-hCCHHHH
Confidence 333444444444444556667777888888776 888999998886554 33444555666666666666 4889999
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 140 IDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 140 i~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..+..+|-.+....++....+..-.--|..+...++|.+|.+.|-.
T Consensus 93 ~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 93 EKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHc
Confidence 9999999888887665544444445556666778899999888754
No 167
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.41 E-value=0.00065 Score=36.52 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Q psy5288 43 YVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNN 74 (186)
Q Consensus 43 y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~ 74 (186)
|..+|.+|...|++++|+++|++++.+....+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 56677888888888888888888777665443
No 168
>KOG4642|consensus
Probab=97.41 E-value=0.0024 Score=49.21 Aligned_cols=108 Identities=17% Similarity=0.219 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q psy5288 33 GNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTD 111 (186)
Q Consensus 33 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~ 111 (186)
+|..+...+....-|+.+....+|..|+.||.+++-+ +|.. +.+|.+=+.||.+. +++....-.++|+++...
T Consensus 3 ~~~~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~-----nP~~-~~Y~tnralchlk~~~~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 3 SPEMSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI-----NPTV-ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN 76 (284)
T ss_pred CcccchHHHHHHhccccccchhhhchHHHHHHHHHhc-----CCCc-chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH
Confidence 3455666777777788888888899999999999987 4443 56788889999888 788888888899888655
Q ss_pred cCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 112 MGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 112 ~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
+ ...+..+|...... ..|+.||..+++|..+.+..
T Consensus 77 ~------vk~h~flg~~~l~s-~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 77 L------VKAHYFLGQWLLQS-KGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred H------HHHHHHHHHHHHhh-ccccHHHHHHHHHHHHHhcC
Confidence 4 34677788888875 89999999999999998864
No 169
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.41 E-value=0.013 Score=41.46 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+...++..+... |++++|+..+++++.+.+-+ ...+..+-.+|...|++..|++.|++
T Consensus 64 ~~~~l~~~~~~~-~~~~~a~~~~~~~l~~dP~~------E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 64 ALERLAEALLEA-GDYEEALRLLQRALALDPYD------EEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 444556666663 77777777777777765532 24556666677777777777777654
No 170
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.40 E-value=0.0007 Score=42.07 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=46.5
Q ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 88 NCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 88 ~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
.+|... ++++|++++++++.+.+.. ...+...|.++... |++++|+..++++++..++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~-g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDD------PELWLQRARCLFQL-GRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHh-ccHHHHHHHHHHHHHHCCC
Confidence 455554 8889999999988886664 34778899999984 9999999999999988764
No 171
>KOG3617|consensus
Probab=97.35 E-value=0.0094 Score=53.34 Aligned_cols=88 Identities=16% Similarity=0.230 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHH----HHHHHHcCChhHHHH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc------
Q psy5288 93 SNPAEAIKAIERA----VEIHTDMGRFIMVAK----------HHENIAEIYEKELEDQEKAIDHYQHAADCYAG------ 152 (186)
Q Consensus 93 ~~~~~A~~~~~~A----l~i~~~~~~~~~~a~----------~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~------ 152 (186)
.+...|+++|+++ -++.+.+.+.+.+-. .+.=-|..+++. |+.|-|+.+|..|-++|.-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~-GemdaAl~~Y~~A~D~fs~VrI~C~ 950 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESV-GEMDAALSFYSSAKDYFSMVRIKCI 950 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcc-cchHHHHHHHHHhhhhhhheeeEee
Confidence 3677788888764 344444432222222 233347777885 9999999999888777652
Q ss_pred -------------cCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 153 -------------EENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 153 -------------~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.++. ....+||.-|...|++.+|+..|.|
T Consensus 951 qGk~~kAa~iA~esgd~----AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 951 QGKTDKAARIAEESGDK----AACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred ccCchHHHHHHHhcccH----HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2221 2345899999999999999999976
No 172
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.34 E-value=0.017 Score=39.89 Aligned_cols=104 Identities=12% Similarity=0.140 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHcCC-----h-hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy5288 80 GLCFVDAANCYKK---SNPAEAIKAIERAVEIHTDMGR-----F-IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCY 150 (186)
Q Consensus 80 a~~~~~a~~~y~~---~~~~~A~~~~~~Al~i~~~~~~-----~-~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~ 150 (186)
+.+|.-+++--++ .-+++|..-|++|.++....-. + .--+.|+--|+..+.. ||+|++++..-++|+.+|
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHH
Confidence 4444444433333 3688999999999999876632 2 2346688889999998 799999999999999988
Q ss_pred hccCC------hHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 151 AGEEN------KSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 151 ~~~~~------~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...+. ..|+. +..+-|..+..+|+.++|++.|+.
T Consensus 86 NRRGEL~qdeGklWIa-aVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIA-AVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHH--TTSTHHHHHHH-HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhccccccccchhHHH-HHHHHHHHHHhcCChHHHHHHHHH
Confidence 75331 12332 335667888999999999999974
No 173
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.34 E-value=0.0056 Score=51.40 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=75.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q psy5288 53 GKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK 131 (186)
Q Consensus 53 ~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~ 131 (186)
.|++++|...+...+.- .| +-.....-+++++.+. +..+|.+.+++++.+..... -...++|+.|..
T Consensus 319 ~~~~d~A~~~l~~L~~~-----~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~------~l~~~~a~all~ 386 (484)
T COG4783 319 AGQYDEALKLLQPLIAA-----QP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP------LLQLNLAQALLK 386 (484)
T ss_pred hcccchHHHHHHHHHHh-----CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc------HHHHHHHHHHHh
Confidence 34555555554442221 12 2223444567888776 88999999999988776553 267789999998
Q ss_pred hcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 132 ELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 132 ~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
+|++.+||..++..+.-.++. ...|.-||..|..+|+-.+|...+
T Consensus 387 -~g~~~eai~~L~~~~~~~p~d------p~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 387 -GGKPQEAIRILNRYLFNDPED------PNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred -cCChHHHHHHHHHHhhcCCCC------chHHHHHHHHHHHhCchHHHHHHH
Confidence 599999999888877654443 257777777777777766666543
No 174
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.34 E-value=0.0074 Score=52.00 Aligned_cols=128 Identities=12% Similarity=0.043 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHH
Q psy5288 42 LYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAK 120 (186)
Q Consensus 42 ~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~ 120 (186)
.+.-++..|...|++++|+++.++|++. .......|.--|.+|... ++.+|.++.+.|..+-.....
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy------ 263 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY------ 263 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH------
Confidence 4455678999999999999999999996 344567888889999877 999999999998877554432
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC-Ch----H--HHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE-NK----S--SANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~-~~----~--~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
+-.+.+..+.. -|+.++|.... .+|.+.+ ++ . +........|.+|.+.|++..|++.|..|
T Consensus 264 iNsK~aKy~LR-a~~~e~A~~~~----~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 264 INSKCAKYLLR-AGRIEEAEKTA----SLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHH----HhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 23344555555 48899887654 3344332 11 1 11234488899999999999999998754
No 175
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.32 E-value=0.0057 Score=50.91 Aligned_cols=100 Identities=21% Similarity=0.155 Sum_probs=78.3
Q ss_pred CCCCHHHHHHHHHHH-----------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHH
Q psy5288 32 GGNKTDEAIDLYVRA-----------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAI 99 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a-----------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~ 99 (186)
..++++.|++.+++. +.++...++-.+|++..++++.. .|.. +..+..-+..+... +++.|+
T Consensus 181 ~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-----~p~d-~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-----NPQD-SELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHhcCCHHHHH
Confidence 346899999999987 45677788889999998888853 2333 55555556666555 899999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy5288 100 KAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQ 144 (186)
Q Consensus 100 ~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~ 144 (186)
.+.++|.++....- .++..|+.+|.. +|+++.|+..++
T Consensus 255 ~iAk~av~lsP~~f------~~W~~La~~Yi~-~~d~e~ALlaLN 292 (395)
T PF09295_consen 255 EIAKKAVELSPSEF------ETWYQLAECYIQ-LGDFENALLALN 292 (395)
T ss_pred HHHHHHHHhCchhH------HHHHHHHHHHHh-cCCHHHHHHHHh
Confidence 99999998876663 488899999999 599999997765
No 176
>KOG1174|consensus
Probab=97.30 E-value=0.0055 Score=50.77 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=63.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q psy5288 89 CYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIAN 168 (186)
Q Consensus 89 ~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~ 168 (186)
+|...++..|+.+-++++++.... -..+...|.++.. +++.++|+-.|..|..+.+-. -.+|..|-.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~------~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~r------L~~Y~GL~h 376 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRN------HEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYR------LEIYRGLFH 376 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCccc------chHHHhccHHHHh-ccchHHHHHHHHHHHhcchhh------HHHHHHHHH
Confidence 344447888888888887664333 2256778999998 599999999999999986532 478999999
Q ss_pred HHHhccCHHHHHHH
Q psy5288 169 YSALTDHLDKAIKL 182 (186)
Q Consensus 169 ~y~~~g~~~~A~~~ 182 (186)
+|...|++.+|.-.
T Consensus 377 sYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 377 SYLAQKRFKEANAL 390 (564)
T ss_pred HHHhhchHHHHHHH
Confidence 99999999998754
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.28 E-value=0.00047 Score=42.21 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 93 SNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 93 ~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
.++++|++.|++++...+.. ..+...+|.+|... |++++|...+++++...++
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQ-GQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGGTT
T ss_pred cCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcC
Confidence 47889999999998877664 33777899999995 9999999999999998765
No 178
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.26 E-value=0.059 Score=42.00 Aligned_cols=157 Identities=16% Similarity=0.134 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH-----------------HHHHHhcCCHHHHHHHHHHHHHH
Q psy5288 7 KARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA-----------------GNLFKLGKKWNDGGNAFLQAGTL 69 (186)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a-----------------g~~~~~~g~~~~A~~~y~~a~~~ 69 (186)
.+..|+.++.+.|. +|+|++|++.|+.+ +-.+.+.++++.|+....+=+.+
T Consensus 33 p~~~LY~~g~~~L~------------~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 33 PASELYNEGLTELQ------------KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 57889999999998 36999999999998 33577889999999888777776
Q ss_pred HHHcCChhHHHHHHHHHHHHHhcC------CH---HHHHHHHHHHHHHHHHcCC-----------hhHHHHHHHHHHHHH
Q psy5288 70 HLKNNNKHDAGLCFVDAANCYKKS------NP---AEAIKAIERAVEIHTDMGR-----------FIMVAKHHENIAEIY 129 (186)
Q Consensus 70 ~~~~~~~~~aa~~~~~a~~~y~~~------~~---~~A~~~~~~Al~i~~~~~~-----------~~~~a~~~~~lg~~y 129 (186)
+-. ...+.-++.-.|.++... +. .+|+..++.-+.-++...- ....|..-..+|+.|
T Consensus 101 yP~---~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 101 YPT---HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred CCC---CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 533 333344444555555432 33 3444555544443332211 124455567889999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHH
Q psy5288 130 EKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKL 182 (186)
Q Consensus 130 ~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~ 182 (186)
... |.+--|+..+++.++-+++... ....+..+.+.|..+|-.++|-++
T Consensus 178 ~kr-~~~~AA~nR~~~v~e~y~~t~~---~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 178 LKR-GAYVAAINRFEEVLENYPDTSA---VREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHh-cChHHHHHHHHHHHhccccccc---hHHHHHHHHHHHHHhCChHHHHHH
Confidence 997 9999999999999998887543 345677888999999988888654
No 179
>PRK15331 chaperone protein SicA; Provisional
Probab=97.24 E-value=0.0096 Score=43.36 Aligned_cols=99 Identities=9% Similarity=-0.027 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF 115 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~ 115 (186)
++-.+..-..+--+...|++++|...|.-..-. ++.. ...+.-+|-|+... ++++|+.+|--|..+....-.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d~~n-~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~- 106 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY-----DFYN-PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR- 106 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC-
Confidence 445555555555566789999999888655443 3333 34567888898876 999999999998887754433
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAAD 148 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~ 148 (186)
-.+.+|.||.. +|+.+.|..+|+.+++
T Consensus 107 -----p~f~agqC~l~-l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 107 -----PVFFTGQCQLL-MRKAAKARQCFELVNE 133 (165)
T ss_pred -----ccchHHHHHHH-hCCHHHHHHHHHHHHh
Confidence 36779999998 6999999999999998
No 180
>PLN03077 Protein ECB2; Provisional
Probab=97.21 E-value=0.016 Score=52.98 Aligned_cols=51 Identities=14% Similarity=0.037 Sum_probs=35.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 128 IYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 128 ~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+... ++.+.+....++.+++-+++ ...+..++++|...|++++|.++.+.
T Consensus 666 ac~~~-~~~e~~e~~a~~l~~l~p~~------~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 666 ACRIH-RHVELGELAAQHIFELDPNS------VGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred HHHHc-CChHHHHHHHHHHHhhCCCC------cchHHHHHHHHHHCCChHHHHHHHHH
Confidence 33443 66666666666666654432 25778889999999999999998764
No 181
>KOG3785|consensus
Probab=97.21 E-value=0.013 Score=47.83 Aligned_cols=154 Identities=17% Similarity=0.138 Sum_probs=88.4
Q ss_pred HHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH---------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCCh
Q psy5288 12 VAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA---------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNK 76 (186)
Q Consensus 12 ~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a---------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~ 76 (186)
.++|+|+=+ -..|+| +.+|+-|+.+++.. +-++..+|+|++|+..|.-+.+ -.++
T Consensus 20 ~kkarK~P~--Ledfls----~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~----~~~~ 89 (557)
T KOG3785|consen 20 IKKARKMPE--LEDFLS----NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN----KDDA 89 (557)
T ss_pred chhhhcCch--HHHHHh----cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc----cCCC
Confidence 566666544 134433 46888888887765 4467788899988888865544 1122
Q ss_pred hHHHHHHHHHHHHHhcC-CHHHHHHHHHHHH----------HHHHHcCChhHHHHHHHHHHHHHHHhc---------CCH
Q psy5288 77 HDAGLCFVDAANCYKKS-NPAEAIKAIERAV----------EIHTDMGRFIMVAKHHENIAEIYEKEL---------EDQ 136 (186)
Q Consensus 77 ~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al----------~i~~~~~~~~~~a~~~~~lg~~y~~~l---------g~~ 136 (186)
. +....+++-|+--+ .+.+|...-.+|. .+..++|+.......+.+++...+++| -.|
T Consensus 90 ~--~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HY 167 (557)
T KOG3785|consen 90 P--AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHY 167 (557)
T ss_pred C--cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHH
Confidence 2 22333444444333 4444444333332 123456777777667766666655431 234
Q ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 137 EKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 137 ~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
++||+.|.+.+.- ++... .....+|.+|.++.-|+-+-++.
T Consensus 168 QeAIdvYkrvL~d-----n~ey~-alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 168 QEAIDVYKRVLQD-----NPEYI-ALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred HHHHHHHHHHHhc-----Chhhh-hhHHHHHHHHHhcchhhhHHHHH
Confidence 5555555444432 22222 35577899999999888777654
No 182
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.20 E-value=0.0046 Score=51.86 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=75.3
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q psy5288 75 NKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE 154 (186)
Q Consensus 75 ~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~ 154 (186)
++.+.+.-|-.+...|....+++|...++.-+.-.+ +| .....-.+.++... +++++|++.+++++.+.+..
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P--~N----~~~~~~~~~i~~~~-nk~~~A~e~~~kal~l~P~~- 373 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP--DN----PYYLELAGDILLEA-NKAKEAIERLKKALALDPNS- 373 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCc-
Confidence 345556667677777777788888888776322222 34 33667789999995 99999999999999998764
Q ss_pred ChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 155 NKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 155 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.....++|++|.+.|++++|+..+++
T Consensus 374 -----~~l~~~~a~all~~g~~~eai~~L~~ 399 (484)
T COG4783 374 -----PLLQLNLAQALLKGGKPQEAIRILNR 399 (484)
T ss_pred -----cHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 25778999999999999999998865
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.19 E-value=0.0088 Score=51.61 Aligned_cols=127 Identities=18% Similarity=0.121 Sum_probs=80.6
Q ss_pred HhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHH--------------HHhcCC--------HHHHHHHH
Q psy5288 6 QKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNL--------------FKLGKK--------WNDGGNAF 63 (186)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~--------------~~~~g~--------~~~A~~~y 63 (186)
.+|=+++-+|...+. .+ ..++...|+++|+++... |..... ...+.+..
T Consensus 337 ~~Ay~~~lrg~~~~~---~~------~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 337 GAALTLFYQAHHYLN---SG------DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred HHHHHHHHHHHHHHh---cC------CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 356677777777776 11 345788999999999431 211111 11112211
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy5288 64 LQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDH 142 (186)
Q Consensus 64 ~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~ 142 (186)
.++..+ ..++.. ...|.-+|.+.... ++++|...+++|+.+.. + +..+..+|.++... |++++|++.
T Consensus 408 ~~a~al---~~~~~~-~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p---s----~~a~~~lG~~~~~~-G~~~eA~~~ 475 (517)
T PRK10153 408 DNIVAL---PELNVL-PRIYEILAVQALVKGKTDEAYQAINKAIDLEM---S----WLNYVLLGKVYELK-GDNRLAADA 475 (517)
T ss_pred HHhhhc---ccCcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---C----HHHHHHHHHHHHHc-CCHHHHHHH
Confidence 221111 012222 24454455555433 99999999999998873 1 45889999999995 999999999
Q ss_pred HHHHHHHHhcc
Q psy5288 143 YQHAADCYAGE 153 (186)
Q Consensus 143 y~kA~~l~~~~ 153 (186)
|++|+.+.+..
T Consensus 476 ~~~A~~L~P~~ 486 (517)
T PRK10153 476 YSTAFNLRPGE 486 (517)
T ss_pred HHHHHhcCCCC
Confidence 99999997654
No 184
>KOG0624|consensus
Probab=97.18 E-value=0.033 Score=45.34 Aligned_cols=136 Identities=13% Similarity=0.058 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhc-CCHHH
Q psy5288 33 GNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK-SNPAE 97 (186)
Q Consensus 33 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~-~~~~~ 97 (186)
++++.+|++.|-.| +.+|..+|+-.-|+.-+.+.+++ .|+..+.-..+ |.+..+ .++++
T Consensus 51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-----KpDF~~ARiQR-g~vllK~Gele~ 124 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-----KPDFMAARIQR-GVVLLKQGELEQ 124 (504)
T ss_pred hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-----CccHHHHHHHh-chhhhhcccHHH
Confidence 35666666666555 23455555555555555555555 44444444433 333333 37788
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHH
Q psy5288 98 AIKAIERAVEIHTDMGRFIMVAKHHENIA------------EIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIK 165 (186)
Q Consensus 98 A~~~~~~Al~i~~~~~~~~~~a~~~~~lg------------~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~ 165 (186)
|..-|.+.+.-...+|.. -....+++ .-+... |+...||++..+.+++.+ |....+..
T Consensus 125 A~~DF~~vl~~~~s~~~~---~eaqskl~~~~e~~~l~~ql~s~~~~-GD~~~ai~~i~~llEi~~------Wda~l~~~ 194 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLV---LEAQSKLALIQEHWVLVQQLKSASGS-GDCQNAIEMITHLLEIQP------WDASLRQA 194 (504)
T ss_pred HHHHHHHHHhcCCCcchh---HHHHHHHHhHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHhcCc------chhHHHHH
Confidence 888887766543332221 11122222 222333 788888888888887743 44566677
Q ss_pred HHHHHHhccCHHHHHHHHH
Q psy5288 166 IANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 166 la~~y~~~g~~~~A~~~~~ 184 (186)
-+.+|+..|+..+||.-+.
T Consensus 195 Rakc~i~~~e~k~AI~Dlk 213 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLK 213 (504)
T ss_pred HHHHHHhcCcHHHHHHHHH
Confidence 7888888888888876543
No 185
>KOG1127|consensus
Probab=97.17 E-value=0.0017 Score=58.75 Aligned_cols=126 Identities=13% Similarity=0.101 Sum_probs=87.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHH--------------HcCChhHHHHHHHHH----------------HHHHhcC-CH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHL--------------KNNNKHDAGLCFVDA----------------ANCYKKS-NP 95 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~--------------~~~~~~~aa~~~~~a----------------~~~y~~~-~~ 95 (186)
|.+|+..-+...|..||.+|-++-- ...+++.+.....+. |..|.+. +.
T Consensus 499 G~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~ 578 (1238)
T KOG1127|consen 499 GQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNL 578 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccch
Confidence 6677777778888888888777622 122222222221111 2223322 67
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccC
Q psy5288 96 AEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDH 175 (186)
Q Consensus 96 ~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~ 175 (186)
..|+..++.|+++.+..=+ ++..+|.+|... |.|..|+..|.+|..+-+.. .-.....+.+....|+
T Consensus 579 h~aV~~fQsALR~dPkD~n------~W~gLGeAY~~s-Gry~~AlKvF~kAs~LrP~s------~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 579 HGAVCEFQSALRTDPKDYN------LWLGLGEAYPES-GRYSHALKVFTKASLLRPLS------KYGRFKEAVMECDNGK 645 (1238)
T ss_pred hhHHHHHHHHhcCCchhHH------HHHHHHHHHHhc-CceehHHHhhhhhHhcCcHh------HHHHHHHHHHHHHhhh
Confidence 7899999999887766533 889999999997 99999999999999985542 1344567778888999
Q ss_pred HHHHHHHHHh
Q psy5288 176 LDKAIKLYEQ 185 (186)
Q Consensus 176 ~~~A~~~~~~ 185 (186)
|.+|+..+..
T Consensus 646 Ykeald~l~~ 655 (1238)
T KOG1127|consen 646 YKEALDALGL 655 (1238)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 186
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.16 E-value=0.0013 Score=36.96 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q psy5288 120 KHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIAN 168 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~ 168 (186)
..+..+|.+|... |++++|+..|++++...+++ ...+..+|.
T Consensus 2 ~~~~~la~~~~~~-G~~~~A~~~~~~~l~~~P~~------~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRL-GQPDEAERLLRRALALDPDD------PEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCC------HHHHHHhhh
Confidence 3578899999994 99999999999999998865 256666554
No 187
>KOG0495|consensus
Probab=97.12 E-value=0.012 Score=51.33 Aligned_cols=133 Identities=16% Similarity=0.164 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHHHH--------------HHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHH
Q psy5288 33 GNKTDEAIDLYVRAGN--------------LFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAE 97 (186)
Q Consensus 33 ~~~~~~A~~~y~~ag~--------------~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~ 97 (186)
.|+...|.....++-. +-.....++.|..++.++-.+ .+....|.+.+.+-.-+ +.++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~-------sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-------SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-------CCcchhhHHHhHHHHHhhhHHH
Confidence 3566666666555411 122233455555544444432 22223333444333333 6688
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHH
Q psy5288 98 AIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLD 177 (186)
Q Consensus 98 A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~ 177 (186)
|++.++.+++.|...-. .+..+|.+++++ ++.+.|.+.|..-+..++.. ...|+.++.+-.+.|+..
T Consensus 670 A~rllEe~lk~fp~f~K------l~lmlGQi~e~~-~~ie~aR~aY~~G~k~cP~~------ipLWllLakleEk~~~~~ 736 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDFHK------LWLMLGQIEEQM-ENIEMAREAYLQGTKKCPNS------IPLWLLLAKLEEKDGQLV 736 (913)
T ss_pred HHHHHHHHHHhCCchHH------HHHHHhHHHHHH-HHHHHHHHHHHhccccCCCC------chHHHHHHHHHHHhcchh
Confidence 88888888877765543 677889998886 88999999888888877753 256777777777888888
Q ss_pred HHHHHHHh
Q psy5288 178 KAIKLYEQ 185 (186)
Q Consensus 178 ~A~~~~~~ 185 (186)
+|...+++
T Consensus 737 rAR~ildr 744 (913)
T KOG0495|consen 737 RARSILDR 744 (913)
T ss_pred hHHHHHHH
Confidence 88877765
No 188
>KOG0495|consensus
Probab=97.10 E-value=0.021 Score=49.96 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
++..+|.++... .++++|.++|++|+.+.+..| ++|..+-..+...|.=++-.++|.
T Consensus 819 Vllaia~lfw~e-~k~~kar~Wf~Ravk~d~d~G------D~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 819 VLLAIAKLFWSE-KKIEKAREWFERAVKKDPDNG------DAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHccCCccc------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 567888888887 899999999999999988876 456555567777775555555554
No 189
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=97.08 E-value=0.028 Score=43.82 Aligned_cols=92 Identities=15% Similarity=0.060 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q psy5288 54 KKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKE 132 (186)
Q Consensus 54 g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~ 132 (186)
..-...++++.+|...+++.+...-......++|.-|... ++++|+.+|+.+...+...|+......++..+-.|+..
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~- 230 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR- 230 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH-
Confidence 3456779999999999999998888888888999988876 99999999999999999999999999999999999998
Q ss_pred cCCHHHHHHHHHHH
Q psy5288 133 LEDQEKAIDHYQHA 146 (186)
Q Consensus 133 lg~~~~Ai~~y~kA 146 (186)
+|+.+..+.+--+.
T Consensus 231 ~~~~~~~l~~~leL 244 (247)
T PF11817_consen 231 LGDVEDYLTTSLEL 244 (247)
T ss_pred hCCHHHHHHHHHHH
Confidence 69999888765443
No 190
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.08 E-value=0.04 Score=40.81 Aligned_cols=111 Identities=8% Similarity=-0.022 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF 115 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~ 115 (186)
++....+...|+.|...|+.+.|+++|.++.+- .-.+......+..+..+.... ++.....+..+|-.+....|+.
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~ 109 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDY---CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW 109 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH
Confidence 566678999999999999999999999986664 334555566666777666655 8999999999999999998888
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~ 151 (186)
......-.--|..+... ++|..|...|-.+..-+.
T Consensus 110 ~~~nrlk~~~gL~~l~~-r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 110 ERRNRLKVYEGLANLAQ-RDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHHHHHHh-chHHHHHHHHHccCcCCC
Confidence 77776666667777775 899999999988876664
No 191
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.013 Score=45.94 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHH
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMV 118 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~ 118 (186)
-..|+.|-..++ .|+|..|.+.|..-++-|- +-.-+..++.=+|+++... +++.|...|..... ...+...+
T Consensus 142 ~~~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP---~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KA 214 (262)
T COG1729 142 TKLYNAALDLYK-SGDYAEAEQAFQAFIKKYP---NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKA 214 (262)
T ss_pred hHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCC---CCcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCC
Confidence 447888777766 4669999999987777542 2223467777899998876 99999999987655 56666778
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE 154 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~ 154 (186)
...+++||.+... +|+-++|...|++.+.-|+...
T Consensus 215 pdallKlg~~~~~-l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 215 PDALLKLGVSLGR-LGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred hHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHCCCCH
Confidence 8899999999999 6999999999999999999764
No 192
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.03 E-value=0.0021 Score=35.10 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
+.++.++|.+|..+ |++++|..++++++.+.++.
T Consensus 2 a~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQ-GRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHC-T-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhh-hhcchhhHHHHHHHHHHHHH
Confidence 56889999999995 99999999999999998764
No 193
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.03 E-value=0.038 Score=39.82 Aligned_cols=88 Identities=17% Similarity=0.280 Sum_probs=63.7
Q ss_pred HHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy5288 89 CYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIA 167 (186)
Q Consensus 89 ~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la 167 (186)
++... +++.|+.++.+++.+... ...........+..+.. .++++.|+..+.+++...+.. ....+..++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~ 209 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEA-LGRYEEALELLEKALKLNPDD-----DAEALLNLG 209 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHH-hcCHHHHHHHHHHHHhhCccc-----chHHHHHhh
Confidence 44444 889999999998442211 12334455555555666 489999999999999987753 236778889
Q ss_pred HHHHhccCHHHHHHHHHh
Q psy5288 168 NYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 168 ~~y~~~g~~~~A~~~~~~ 185 (186)
.++...+++++|+..+.+
T Consensus 210 ~~~~~~~~~~~a~~~~~~ 227 (291)
T COG0457 210 LLYLKLGKYEEALEYYEK 227 (291)
T ss_pred HHHHHcccHHHHHHHHHH
Confidence 999999999999988764
No 194
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.00 E-value=0.018 Score=40.99 Aligned_cols=89 Identities=20% Similarity=0.122 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHH
Q psy5288 80 GLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSA 159 (186)
Q Consensus 80 a~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~ 159 (186)
...|.++-..+...++++|++.|+....=+.-.. -+.+....||.+|... ++++.|+..+++=+++++...+ +
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~---ya~qAqL~l~yayy~~-~~y~~A~a~~~rFirLhP~hp~---v 83 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE---YAEQAQLDLAYAYYKQ-GDYEEAIAAYDRFIRLHPTHPN---V 83 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc---ccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCCC---c
Confidence 3445455555555577777776665433332222 2334566777777775 7788888777777777765432 2
Q ss_pred HHHHHHHHHHHHhccC
Q psy5288 160 NKCLIKIANYSALTDH 175 (186)
Q Consensus 160 ~~~~~~la~~y~~~g~ 175 (186)
..++...|.++..+..
T Consensus 84 dYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 84 DYAYYMRGLSYYEQDE 99 (142)
T ss_pred cHHHHHHHHHHHHHhh
Confidence 3455666666665554
No 195
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.99 E-value=0.042 Score=46.89 Aligned_cols=108 Identities=16% Similarity=0.093 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF 115 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~ 115 (186)
+++.-+....|.++...|+.++|+++|+++....... +.-...++.+++-++... ++++|.+++.+..+ .+.
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~--~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~---~s~-- 336 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW--KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK---ESK-- 336 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH--HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh---ccc--
Confidence 3344456667889999999999999999988654333 233457788999998876 99999999876543 222
Q ss_pred hHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHhc
Q psy5288 116 IMVAKHHENIAEIYEKELEDQ-------EKAIDHYQHAADCYAG 152 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~-------~~Ai~~y~kA~~l~~~ 152 (186)
+.-+.+..-.|.++.. +|+. ++|.+++.++-.+..+
T Consensus 337 WSka~Y~Y~~a~c~~~-l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLM-LGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred cHHHHHHHHHHHHHHh-hccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 3456677778888887 5888 8888888888888765
No 196
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.92 E-value=0.031 Score=47.68 Aligned_cols=102 Identities=18% Similarity=0.095 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q psy5288 76 KHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE 154 (186)
Q Consensus 76 ~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~ 154 (186)
|.++ ..+...|.++... ++++|++.+++++..-.+ ...-..-++.++|.++..+ .+|++|..++.+..+. +.
T Consensus 264 P~s~-lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~~-~~w~~A~~~f~~L~~~---s~ 336 (468)
T PF10300_consen 264 PNSA-LFLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMFQ-HDWEEAAEYFLRLLKE---SK 336 (468)
T ss_pred CCcH-HHHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHHH-chHHHHHHHHHHHHhc---cc
Confidence 4444 4444677777655 999999999998843333 3334456899999999995 9999999999998874 22
Q ss_pred ChHHHHHHHHHHHHHHHhccCH-------HHHHHHHHhC
Q psy5288 155 NKSSANKCLIKIANYSALTDHL-------DKAIKLYEQL 186 (186)
Q Consensus 155 ~~~~~~~~~~~la~~y~~~g~~-------~~A~~~~~~~ 186 (186)
. ..+-+..-.|-++..+|+. ++|.++|.++
T Consensus 337 W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 337 W--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred c--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 2 2234667778889999988 9999998764
No 197
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.88 E-value=0.0038 Score=32.68 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGTL 69 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~~a~~~ 69 (186)
+.|...|.+|..+|++++|+++|.+++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45677788888888888888888888877
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.011 Score=46.83 Aligned_cols=94 Identities=14% Similarity=0.049 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhccCCh
Q psy5288 80 GLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKE--LEDQEKAIDHYQHAADCYAGEENK 156 (186)
Q Consensus 80 a~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~--lg~~~~Ai~~y~kA~~l~~~~~~~ 156 (186)
+.-+.-+|.+|... +++.|...|.+|.++..++-+ ++.-+|.++..+ ...-.++...+.+|+.+.+.+
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~------~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~--- 226 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE------ILLGLAEALYYQAGQQMTAKARALLRQALALDPAN--- 226 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCcc---
Confidence 35566889999987 999999999999988766643 566677776543 134678889999999986543
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 157 SSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 157 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.....-||..+...|+|.+|+..++.
T Consensus 227 ---iral~lLA~~afe~g~~~~A~~~Wq~ 252 (287)
T COG4235 227 ---IRALSLLAFAAFEQGDYAEAAAAWQM 252 (287)
T ss_pred ---HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 36778899999999999999998875
No 199
>KOG1156|consensus
Probab=96.85 E-value=0.0052 Score=53.23 Aligned_cols=125 Identities=11% Similarity=0.109 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChh
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFI 116 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~ 116 (186)
+-..+|.++...|. .++|.+.+......++ .....+..+.-.|-..-.+ +.++|..+.+.++... .++
T Consensus 6 KE~~lF~~~lk~yE-~kQYkkgLK~~~~iL~------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S-- 74 (700)
T KOG1156|consen 6 KENALFRRALKCYE-TKQYKKGLKLIKQILK------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKS-- 74 (700)
T ss_pred HHHHHHHHHHHHHH-HHHHHhHHHHHHHHHH------hCCccchhHHhccchhhcccchHHHHHHHHHHhccC--ccc--
Confidence 44556666666664 3456666555555554 1222233333334443333 7789999998887722 222
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHH
Q psy5288 117 MVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKL 182 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~ 182 (186)
..||.-+|.++.+. .+|++||.+|..|+.+-+++ .++|..++.+-...++|+-..+.
T Consensus 75 --~vCwHv~gl~~R~d-K~Y~eaiKcy~nAl~~~~dN------~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 75 --HVCWHVLGLLQRSD-KKYDEAIKCYRNALKIEKDN------LQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred --chhHHHHHHHHhhh-hhHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHhhhhHHHH
Confidence 34999999999996 99999999999999986654 37899999999999999876654
No 200
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.85 E-value=0.2 Score=44.20 Aligned_cols=145 Identities=17% Similarity=0.093 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChh
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFI 116 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~ 116 (186)
.+|...+.-+...+....+++.|-.+..|+..+.++.+-.+.--.+..-++.+|.+.++..|+...++.++.+...+...
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKAALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCchh
Confidence 44444444444444455555555555555555544422222233333344555555444445555555555554433211
Q ss_pred HHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 117 MVAKHHENIA--EIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 117 ~~a~~~~~lg--~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
.....++- ..+... +++..|++.++....+....+++.....+..--+.+....+..+.+++..+
T Consensus 137 --w~~~frll~~~l~~~~-~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~ 203 (608)
T PF10345_consen 137 --WYYAFRLLKIQLALQH-KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQ 203 (608)
T ss_pred --HHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Confidence 11111111 111111 355555555555555544444444444444444444444455555544443
No 201
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.84 E-value=0.28 Score=43.32 Aligned_cols=127 Identities=11% Similarity=0.030 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC
Q psy5288 56 WNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELE 134 (186)
Q Consensus 56 ~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg 134 (186)
...|+.|++-+.+ -.++....++...+.-+.-++... +++.|..++.|+..+....+-.+..-.+..-++.+|... +
T Consensus 37 I~~ai~CL~~~~~-~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~-~ 114 (608)
T PF10345_consen 37 IATAIKCLEAVLK-QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKT-N 114 (608)
T ss_pred HHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc-C
Confidence 4567888877776 556667888888888888888776 899999999999999988666666677777789999984 4
Q ss_pred CHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 135 DQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 135 ~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...|.....++++.++..+...+.-.+..--...+...+|+..|++.++.
T Consensus 115 -~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~ 164 (608)
T PF10345_consen 115 -PKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQS 164 (608)
T ss_pred -HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 44499999999999998666655555554444444444999999888865
No 202
>KOG2300|consensus
Probab=96.82 E-value=0.16 Score=43.12 Aligned_cols=134 Identities=12% Similarity=0.046 Sum_probs=100.4
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHcCCh-hHHH
Q psy5288 45 RAGNLFKLGK--KWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS--NPAEAIKAIERAVEIHTDMGRF-IMVA 119 (186)
Q Consensus 45 ~ag~~~~~~g--~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~--~~~~A~~~~~~Al~i~~~~~~~-~~~a 119 (186)
-.++.|+..| +...++.|.+.....- -...-.+.+...+|.+...- +.+.|..++++|..+....+++ +.--
T Consensus 12 GlAe~~rt~~PPkIkk~IkClqA~~~~~---is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf 88 (629)
T KOG2300|consen 12 GLAEHFRTSGPPKIKKCIKCLQAIFQFQ---ISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKF 88 (629)
T ss_pred HHHHHHhhcCChhHHHHHHHHHHHhccC---ChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhh
Confidence 3355666666 5666666654443321 11223455566777776543 8999999999999999999887 6667
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 120 KHHENIAEIYEKELE-DQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg-~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
+....++.+|... . ..+.+...+.+|+++.+. .|.|.-..+..|+++..-..|+.-|++.+.
T Consensus 89 ~a~SlLa~lh~~~-~~s~~~~KalLrkaielsq~--~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 89 QAASLLAHLHHQL-AQSFPPAKALLRKAIELSQS--VPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHHHHHHHHHHHh-cCCCchHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 7788899998873 5 789999999999999754 567777888999999999999999998753
No 203
>KOG0551|consensus
Probab=96.80 E-value=0.014 Score=47.14 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~ 112 (186)
|..++-++.|..-|+-|..-++|..|.++|.+.+. ++.+++.--+.+|.|=+-+-..+ ++..|++-+.+|+.+-...
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH 152 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 56778888899999999999999999999999876 45778888888888755554444 8889999888888776554
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 113 GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 113 ~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
..++..-+.++.. |..++.|+.|.+..+.+..+
T Consensus 153 ------~Ka~~R~Akc~~e-Le~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 153 ------LKAYIRGAKCLLE-LERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred ------hhhhhhhhHHHHH-HHHHHHHHHHHhhhhhhhHH
Confidence 3366677778777 68889999998888777654
No 204
>KOG0624|consensus
Probab=96.78 E-value=0.094 Score=42.83 Aligned_cols=141 Identities=13% Similarity=0.104 Sum_probs=94.0
Q ss_pred CCCCHHHHHHHHHHHHH-----------------------------HHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy5288 32 GGNKTDEAIDLYVRAGN-----------------------------LFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLC 82 (186)
Q Consensus 32 ~~~~~~~A~~~y~~ag~-----------------------------~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~ 82 (186)
..|.+++|..-|.+..+ -+...|++..++++..+.+++ .+ ..+..
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-----~~-Wda~l 191 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-----QP-WDASL 191 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-----Cc-chhHH
Confidence 45788888888877732 233466777777777777776 23 33445
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHH
Q psy5288 83 FVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANK 161 (186)
Q Consensus 83 ~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~ 161 (186)
+.-=++||... ++..|+.-.+++..+..++-. .+.+++.++.. +|+.+.++.-..+.+.+.++-..-..--.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe------~~ykis~L~Y~-vgd~~~sL~~iRECLKldpdHK~Cf~~YK 264 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE------GHYKISQLLYT-VGDAENSLKEIRECLKLDPDHKLCFPFYK 264 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchH------HHHHHHHHHHh-hhhHHHHHHHHHHHHccCcchhhHHHHHH
Confidence 55567888876 899999999999888766643 78888999888 69999999888888888664321000000
Q ss_pred HHH------HHHHHHHhccCHHHHHHHHHh
Q psy5288 162 CLI------KIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 162 ~~~------~la~~y~~~g~~~~A~~~~~~ 185 (186)
-+. .-+.-.+..++|.++++..++
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~ 294 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEK 294 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 111 112234566777777776654
No 205
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.73 E-value=0.0058 Score=31.78 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGTL 69 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~~a~~~ 69 (186)
+.+...|.+|...|++++|+++|.+++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46677788888888888888888888877
No 206
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.68 E-value=0.048 Score=43.61 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhc
Q psy5288 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALT 173 (186)
Q Consensus 94 ~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~ 173 (186)
.+.+|...|+...+ .++.....++.++.++.. +|+|++|...+++|+...++. ..++.|++.+..-+
T Consensus 182 ~~~~A~y~f~El~~------~~~~t~~~lng~A~~~l~-~~~~~eAe~~L~~al~~~~~~------~d~LaNliv~~~~~ 248 (290)
T PF04733_consen 182 KYQDAFYIFEELSD------KFGSTPKLLNGLAVCHLQ-LGHYEEAEELLEEALEKDPND------PDTLANLIVCSLHL 248 (290)
T ss_dssp CCCHHHHHHHHHHC------CS--SHHHHHHHHHHHHH-CT-HHHHHHHHHHHCCC-CCH------HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHh------ccCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhccCC------HHHHHHHHHHHHHh
Confidence 46677777766322 223345668889999998 599999999999998654332 46889999999989
Q ss_pred cCH-HHHHHHHHh
Q psy5288 174 DHL-DKAIKLYEQ 185 (186)
Q Consensus 174 g~~-~~A~~~~~~ 185 (186)
|+. +.+-+++++
T Consensus 249 gk~~~~~~~~l~q 261 (290)
T PF04733_consen 249 GKPTEAAERYLSQ 261 (290)
T ss_dssp T-TCHHHHHHHHH
T ss_pred CCChhHHHHHHHH
Confidence 887 445555544
No 207
>KOG4162|consensus
Probab=96.67 E-value=0.057 Score=47.85 Aligned_cols=131 Identities=16% Similarity=0.087 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHH
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS------------NPAEAIKAIERAVEI 108 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~------------~~~~A~~~~~~Al~i 108 (186)
.+..-+-....+.+..++++++-.++++.+... ..+-...+|.-.|.+|-.. ...++++.+++|+++
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~-~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ-RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh-hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 334444456778889999999999999976322 2233344555566666432 135677777777665
Q ss_pred HHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 109 HTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 109 ~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
-..+- .+.+.++.-|..+ ++.+.|..+..+++.+.+... ..+|.-+|.++...+++..|+.+.+
T Consensus 474 d~~dp------~~if~lalq~A~~-R~l~sAl~~~~eaL~l~~~~~-----~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 474 DPTDP------LVIFYLALQYAEQ-RQLTSALDYAREALALNRGDS-----AKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred CCCCc------hHHHHHHHHHHHH-HhHHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 44332 3677788888886 999999999999999866543 4799999999999999999998754
No 208
>KOG4648|consensus
Probab=96.65 E-value=0.013 Score=47.59 Aligned_cols=94 Identities=17% Similarity=0.159 Sum_probs=63.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy5288 46 AGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHEN 124 (186)
Q Consensus 46 ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~ 124 (186)
-|+-|..+|+|++|++||.+++.++ |.... .+.+=+..|.++ .+..|-.-+..|+.+...- ...|..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-----P~NpV-~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y------~KAYSR 170 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-----PHNPV-YHINRALAYLKQKSFAQAEEDCEAAIALDKLY------VKAYSR 170 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-----CCCcc-chhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH------HHHHHH
Confidence 3788999999999999999999984 43333 333444555555 6667766666666553221 123444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 125 IAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 125 lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
-|..-.. ||+..+|-+-++.++++-++
T Consensus 171 R~~AR~~-Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 171 RMQARES-LGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHH-HhhHHHHHHhHHHHHhhCcc
Confidence 4555555 68888888888888888654
No 209
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.46 E-value=0.15 Score=38.21 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=64.2
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHH
Q psy5288 85 DAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCL 163 (186)
Q Consensus 85 ~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~ 163 (186)
.++..+.+. ++++|...+++++..-. |...-+.+-.+||.+...+ |.+|+|+..+. ....+.+.+...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~---De~lk~l~~lRLArvq~q~-~k~D~AL~~L~-------t~~~~~w~~~~~ 162 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTK---DENLKALAALRLARVQLQQ-KKADAALKTLD-------TIKEESWAAIVA 162 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccch---hHHHHHHHHHHHHHHHHHh-hhHHHHHHHHh-------ccccccHHHHHH
Confidence 444444433 88999998888765443 3344555678889998885 88888776544 333445666677
Q ss_pred HHHHHHHHhccCHHHHHHHHHh
Q psy5288 164 IKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 164 ~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.-.|.++...|+-++|+..|++
T Consensus 163 elrGDill~kg~k~~Ar~ay~k 184 (207)
T COG2976 163 ELRGDILLAKGDKQEARAAYEK 184 (207)
T ss_pred HHhhhHHHHcCchHHHHHHHHH
Confidence 8889999999999999998875
No 210
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.42 E-value=0.037 Score=40.95 Aligned_cols=53 Identities=25% Similarity=0.262 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh---cCC-------HHHHHHHHHHHHHHHhcc
Q psy5288 95 PAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKE---LED-------QEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 95 ~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~---lg~-------~~~Ai~~y~kA~~l~~~~ 153 (186)
+++|+.-|++|+.|.+..-+ .+..+|++|.++ ..+ +++|..+|++|.+.-+.+
T Consensus 51 iedAisK~eeAL~I~P~~hd------Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHD------ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHhcCCchHH------HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 56788888888888765533 566666666552 122 556666666666655543
No 211
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.38 E-value=0.19 Score=34.85 Aligned_cols=98 Identities=13% Similarity=0.189 Sum_probs=64.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHHcCChh------HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC-------ChhH
Q psy5288 52 LGKKWNDGGNAFLQAGTLHLKNNNKH------DAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG-------RFIM 117 (186)
Q Consensus 52 ~~g~~~~A~~~y~~a~~~~~~~~~~~------~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~-------~~~~ 117 (186)
.-|-|++|+.-+.++.++.+++...+ .-+.++--++..+-.+ ++++++....+|+..+..-| +.+-
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 35668888888888888888754221 2356666666666666 78777777777777665444 3332
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
+ +-.+-|..+.. +|..++|+..|..+.+...+
T Consensus 101 a--aVfsra~Al~~-~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 101 A--AVFSRAVALEG-LGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp H--HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHh-cCChHHHHHHHHHHHHHHHH
Confidence 2 22445666777 69999999999999998654
No 212
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.38 E-value=0.008 Score=30.94 Aligned_cols=31 Identities=29% Similarity=0.405 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
++..+|.+|.. +|++++|+..|++.++-+|+
T Consensus 2 a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYK-LGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence 57889999999 49999999999999998875
No 213
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=96.35 E-value=0.15 Score=38.50 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHH
Q psy5288 117 MVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAI 180 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~ 180 (186)
.-+.....||..|.+ .+.++|+.+|.++++++....+. -..++..|+.+|.++|++++|-
T Consensus 139 ~t~elq~aLAtyY~k--rD~~Kt~~ll~~~L~l~~~~~~~--n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYTK--RDPEKTIQLLLRALELSNPDDNF--NPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHhcchhhhh
Confidence 446788889999997 59999999999999998865322 2478899999999999999884
No 214
>KOG1070|consensus
Probab=96.34 E-value=0.067 Score=50.47 Aligned_cols=136 Identities=10% Similarity=0.116 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~ 112 (186)
.+|-++.+.|..+..+|...+++++|.++++..++=+ .+.-..|...+...... +-+.|...+++|+......
T Consensus 1524 cqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF------~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1524 CQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF------GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh------cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 3444444444444555555555555555555444422 12334444444444444 3456777888888887663
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 113 GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 113 ~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
.- -......+.+--. .|+.+++...|+--+.-+++.. +.|.-....=++.|+.+.+..+|+|+
T Consensus 1598 eH----v~~IskfAqLEFk-~GDaeRGRtlfEgll~ayPKRt------DlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1598 EH----VEFISKFAQLEFK-YGDAERGRTLFEGLLSAYPKRT------DLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred hh----HHHHHHHHHHHhh-cCCchhhHHHHHHHHhhCccch------hHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 22 2244555666555 4888888888888888887643 45544444556778888888888774
No 215
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.31 E-value=0.13 Score=44.50 Aligned_cols=91 Identities=18% Similarity=0.162 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHH
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSA 159 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~ 159 (186)
-++.-++..|... ++++|+++..+|++.-+. ....+...|.||... |++++|.++.+.|-.+...+.
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely~~KarilKh~-G~~~~Aa~~~~~Ar~LD~~DR----- 262 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELYMTKARILKHA-GDLKEAAEAMDEARELDLADR----- 262 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhCChhhH-----
Confidence 3455678888766 899999999999877544 355899999999995 999999999999999855432
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 160 NKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 160 ~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
.+..+.+.-+.+.|+.++|.+.+.
T Consensus 263 -yiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 263 -YINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345677778889999999998764
No 216
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.31 E-value=0.015 Score=31.54 Aligned_cols=34 Identities=6% Similarity=0.084 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKN 73 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~ 73 (186)
+.++...|.+|..+|++++|..++.+++.+.+++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 4567788888888899999999999888888764
No 217
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.29 E-value=0.016 Score=30.17 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGTLH 70 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~ 70 (186)
+.|...|.+|..+|++++|..+|.+++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456666777777777777777777777664
No 218
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.28 E-value=0.002 Score=34.19 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy5288 101 AIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAID 141 (186)
Q Consensus 101 ~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~ 141 (186)
+|++|+++.+.. +..+.++|.+|... |++++|++
T Consensus 1 ~y~kAie~~P~n------~~a~~nla~~~~~~-g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN------AEAYNNLANLYLNQ-GDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC------HHHHHHHHHHHHHC-cCHHhhcC
Confidence 477888887666 34899999999995 99999973
No 219
>PRK11906 transcriptional regulator; Provisional
Probab=96.27 E-value=0.084 Score=44.52 Aligned_cols=130 Identities=10% Similarity=0.027 Sum_probs=90.8
Q ss_pred HHHH--HHHHHHHHHHHh--cCCHHHHHHHHHHHH---HHHHHcCChhHHHHHHHHHHHHHhcC----------CHHHHH
Q psy5288 37 DEAI--DLYVRAGNLFKL--GKKWNDGGNAFLQAG---TLHLKNNNKHDAGLCFVDAANCYKKS----------NPAEAI 99 (186)
Q Consensus 37 ~~A~--~~y~~ag~~~~~--~g~~~~A~~~y~~a~---~~~~~~~~~~~aa~~~~~a~~~y~~~----------~~~~A~ 99 (186)
++|. ++|.++-..+.. ......|..+|.+|. .+ +|.. +.+|.-++.|+... +..+|+
T Consensus 251 ~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l-----dp~~-a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~ 324 (458)
T PRK11906 251 KNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI-----QTLK-TECYCLLAECHMSLALHGKSELELAAQKAL 324 (458)
T ss_pred ccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC-----Cccc-HHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 4566 667766544321 123566777788877 43 4433 33455566565432 345777
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHH
Q psy5288 100 KAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKA 179 (186)
Q Consensus 100 ~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A 179 (186)
+..++|+++-... +.++..+|.+.... ++++.|+.+|++|..+.++. ...+.-.|.+..-.|+.++|
T Consensus 325 ~~A~rAveld~~D------a~a~~~~g~~~~~~-~~~~~a~~~f~rA~~L~Pn~------A~~~~~~~~~~~~~G~~~~a 391 (458)
T PRK11906 325 ELLDYVSDITTVD------GKILAIMGLITGLS-GQAKVSHILFEQAKIHSTDI------ASLYYYRALVHFHNEKIEEA 391 (458)
T ss_pred HHHHHHHhcCCCC------HHHHHHHHHHHHhh-cchhhHHHHHHHHhhcCCcc------HHHHHHHHHHHHHcCCHHHH
Confidence 8888887765544 45788899988874 89999999999999997754 46777788888889999999
Q ss_pred HHHHHh
Q psy5288 180 IKLYEQ 185 (186)
Q Consensus 180 ~~~~~~ 185 (186)
++..++
T Consensus 392 ~~~i~~ 397 (458)
T PRK11906 392 RICIDK 397 (458)
T ss_pred HHHHHH
Confidence 998876
No 220
>KOG2376|consensus
Probab=96.26 E-value=0.11 Score=45.02 Aligned_cols=116 Identities=11% Similarity=0.122 Sum_probs=66.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy5288 48 NLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAE 127 (186)
Q Consensus 48 ~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~ 127 (186)
+.+-..|+|++|...-.+.+.+. |......+.+..-+-....|++|+ .+.+..+-........+.-+-
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-----pdd~~a~~cKvValIq~~ky~~AL-------k~ikk~~~~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-----PDDEDAIRCKVVALIQLDKYEDAL-------KLIKKNGALLVINSFFFEKAY 87 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-----CCcHhhHhhhHhhhhhhhHHHHHH-------HHHHhcchhhhcchhhHHHHH
Confidence 45666778888888877777763 333333333322221111444444 333333322222223366677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 128 IYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 128 ~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
|... +++.|+|+..++ ...... .....--|.++.++|+|++|.++|+.
T Consensus 88 c~Yr-lnk~Dealk~~~----~~~~~~-----~~ll~L~AQvlYrl~~ydealdiY~~ 135 (652)
T KOG2376|consen 88 CEYR-LNKLDEALKTLK----GLDRLD-----DKLLELRAQVLYRLERYDEALDIYQH 135 (652)
T ss_pred HHHH-cccHHHHHHHHh----cccccc-----hHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7666 588888888887 122111 13445557788888889998888875
No 221
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.26 E-value=0.42 Score=37.74 Aligned_cols=104 Identities=21% Similarity=0.269 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHHH------------HHHHh----cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC---
Q psy5288 33 GNKTDEAIDLYVRAG------------NLFKL----GKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS--- 93 (186)
Q Consensus 33 ~~~~~~A~~~y~~ag------------~~~~~----~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~--- 93 (186)
..++.+|+++|..++ .+|.. ..++.+|...|.+|++. |++.. ......++.+|...
T Consensus 90 ~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~----g~~~a-~~~~~~l~~~~~~g~~~ 164 (292)
T COG0790 90 SRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL----GNVEA-ALAMYRLGLAYLSGLQA 164 (292)
T ss_pred cccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc----CChhH-HHHHHHHHHHHHcChhh
Confidence 457888888888773 34443 33888999999888885 34433 33445777777653
Q ss_pred -----CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHH
Q psy5288 94 -----NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKEL---EDQEKAIDHYQHAADC 149 (186)
Q Consensus 94 -----~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~l---g~~~~Ai~~y~kA~~l 149 (186)
+...|+..|.+|.... .......+|.+|..-+ .++.+|+.+|.+|.+.
T Consensus 165 ~~~~~~~~~A~~~~~~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 165 LAVAYDDKKALYLYRKAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred hcccHHHHhHHHHHHHHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 2347888888876555 3447788898887521 3789999999999885
No 222
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.15 E-value=0.31 Score=41.59 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=83.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-C---------Ch-----
Q psy5288 52 LGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM-G---------RF----- 115 (186)
Q Consensus 52 ~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~-~---------~~----- 115 (186)
+..++..-+..-.+|+++. ...+.+|.-+++ ... -..+|.++|+||++..+.. + ..
T Consensus 180 RERnp~aRIkaA~eALei~------pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~ 251 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEIN------PDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH 251 (539)
T ss_pred hcCCHHHHHHHHHHHHHhh------hhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence 4567888888888888883 333444532221 011 3578888888888764322 1 11
Q ss_pred ----hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 116 ----IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 116 ----~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.....+-..+|.+... +|+.++||+.+...+..++..++ ..+..+|.+++..++.|.++-.++.+
T Consensus 252 ~Rdt~~~~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~~~~----l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 252 RRDTNVLVYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPNLDN----LNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred ccccchhhhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCccch----hhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1112344779999998 69999999999999988764332 25788999999999999999887754
No 223
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=96.07 E-value=0.41 Score=37.67 Aligned_cols=111 Identities=13% Similarity=0.069 Sum_probs=67.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q psy5288 52 LGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK 131 (186)
Q Consensus 52 ~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~ 131 (186)
.+++|++|++.....+.++-+.+....++..-.-+.++|.+.......+...+ +..++..
T Consensus 2 ~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~r--------------------l~~l~~~ 61 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIAR--------------------LIELISL 61 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHH--------------------HHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH--------------------HHHHHHh
Confidence 46789999999999999988888877777666666677766421111112223 3333333
Q ss_pred hcCCH-HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 132 ELEDQ-EKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 132 ~lg~~-~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
++.- +.-..+..+|+.+....+.+..-......+|..|.+.|++.+|..+|
T Consensus 62 -~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 62 -FPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -S-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred -CCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 1211 12345556666666334444555678899999999999999999887
No 224
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.07 E-value=0.0058 Score=31.49 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 162 CLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 162 ~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
++.++|.+|.+.|++++|+++|+++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5789999999999999999999864
No 225
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.94 E-value=0.036 Score=44.31 Aligned_cols=118 Identities=15% Similarity=0.136 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy5288 43 YVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKH 121 (186)
Q Consensus 43 y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~ 121 (186)
..-++.++...|++++|++++.+. ++. .+..-...+|... +++.|.+.+++.- +.++-. +
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~-------~~l----E~~al~Vqi~L~~~R~dlA~k~l~~~~----~~~eD~----~ 165 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG-------GSL----ELLALAVQILLKMNRPDLAEKELKNMQ----QIDEDS----I 165 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT-------TCH----HHHHHHHHHHHHTT-HHHHHHHHHHHH----CCSCCH----H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc-------Ccc----cHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCcH----H
Confidence 344456677778888777766442 222 3333456677776 8898988776643 222221 3
Q ss_pred HHHHHHHHHH--h-cCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 122 HENIAEIYEK--E-LEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 122 ~~~lg~~y~~--~-lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+..++..+.. . .+++.+|.-.|++..+-++.. ...++.+|.+...+|+|++|.+.+++
T Consensus 166 l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t------~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 166 LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST------PKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S------HHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4444443332 1 146999999999976654321 36778899999999999999998864
No 226
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.90 E-value=0.03 Score=45.99 Aligned_cols=91 Identities=19% Similarity=0.195 Sum_probs=70.7
Q ss_pred hHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy5288 4 NEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCF 83 (186)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~ 83 (186)
++.++.++++.+++-++ .. |+ --..+.-.|..+.+.+.+.+|-++++.|++. ...+..+
T Consensus 306 ~~~d~~~l~k~~e~~l~---~h--------~~---~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~-------~~s~~~~ 364 (400)
T COG3071 306 RPGDPEPLIKAAEKWLK---QH--------PE---DPLLLSTLGRLALKNKLWGKASEALEAALKL-------RPSASDY 364 (400)
T ss_pred CCCCchHHHHHHHHHHH---hC--------CC---ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc-------CCChhhH
Confidence 35677888888888888 11 12 1178888899999999999999999987775 3345667
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy5288 84 VDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF 115 (186)
Q Consensus 84 ~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~ 115 (186)
..+|..|.+. ++.+|-.+++.++.+....+.+
T Consensus 365 ~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~~ 397 (400)
T COG3071 365 AELADALDQLGEPEEAEQVRREALLLTRQPNLP 397 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCc
Confidence 7899999887 9999999999999766655443
No 227
>KOG1839|consensus
Probab=95.84 E-value=0.12 Score=48.31 Aligned_cols=146 Identities=13% Similarity=0.059 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc-C-ChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKN-N-NKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM- 112 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~-~-~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~- 112 (186)
.+...+|...+.++...|++++|+..-.++.-+..+. | +.......|.+++...... ....|+..+.+++.+....
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence 4555666677778888999999998888888877652 2 4555666777777555554 6678888888888775332
Q ss_pred C-ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 113 G-RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE--NKSSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 113 ~-~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
| +++..+.+..+++.++.. +++++.|+.+.+.|..+..+.. .+..-+.++..+++++...+++..|....
T Consensus 1050 ge~hP~~a~~~~nle~l~~~-v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLG-VEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhh-HHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 2 578889999999999999 5999999999999999766532 23334468888999999999998887764
No 228
>KOG2047|consensus
Probab=95.80 E-value=0.55 Score=41.39 Aligned_cols=86 Identities=20% Similarity=0.229 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HhccCChHHHHHHHHHHHHHHHhcc
Q psy5288 96 AEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADC-YAGEENKSSANKCLIKIANYSALTD 174 (186)
Q Consensus 96 ~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l-~~~~~~~~~~~~~~~~la~~y~~~g 174 (186)
.+-+..|..|+.-..-..-+......+...|..|+.. |+.+.|...|++|... |+..+ ....+|.+.|+.=.+..
T Consensus 364 ~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~-~~l~~aRvifeka~~V~y~~v~---dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 364 AEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENN-GDLDDARVIFEKATKVPYKTVE---DLAEVWCAWAEMELRHE 439 (835)
T ss_pred HHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhc-CcHHHHHHHHHHhhcCCccchH---HHHHHHHHHHHHHHhhh
Confidence 3445555555443211111233456788999999996 9999999999999987 33322 23578899998888899
Q ss_pred CHHHHHHHHHh
Q psy5288 175 HLDKAIKLYEQ 185 (186)
Q Consensus 175 ~~~~A~~~~~~ 185 (186)
+++.|+++.++
T Consensus 440 ~~~~Al~lm~~ 450 (835)
T KOG2047|consen 440 NFEAALKLMRR 450 (835)
T ss_pred hHHHHHHHHHh
Confidence 99999988765
No 229
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.76 E-value=0.13 Score=40.82 Aligned_cols=127 Identities=16% Similarity=0.176 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHHHcCChhHHHH
Q psy5288 43 YVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK-S-NPAEAIKAIERAVEIHTDMGRFIMVAK 120 (186)
Q Consensus 43 y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~-~-~~~~A~~~~~~Al~i~~~~~~~~~~a~ 120 (186)
|.+..+..++.+..+.|...|.+|.+ .....-..|...|.+-.. . +...|...|+.+++.+....+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~------ 71 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARK------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD------ 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH------
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH------
Confidence 44455566666678888888888862 233334557677777333 3 777799999999988766544
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++..-...+.. +++.+.|...|++++....... .....|......=.+.|+.+...++.+|
T Consensus 72 ~~~~Y~~~l~~-~~d~~~aR~lfer~i~~l~~~~---~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 72 FWLEYLDFLIK-LNDINNARALFERAISSLPKEK---QSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHCCTSSCHH---HCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCcHHHHHHHHHHHHHhcCchh---HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33334445555 5899999999999998744321 1235777777777778888888777654
No 230
>KOG0545|consensus
Probab=95.72 E-value=0.17 Score=39.55 Aligned_cols=109 Identities=11% Similarity=0.067 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc------CChhH------HHHHHHHHHHHHhcC-CHHHHHHHHH
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKN------NNKHD------AGLCFVDAANCYKKS-NPAEAIKAIE 103 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~------~~~~~------aa~~~~~a~~~y~~~-~~~~A~~~~~ 103 (186)
-.|.....+-|+-+...|+|.+|..+|..|+-+.+.+ |+++. ....+.|..+|+... ++-+++++..
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 4788889999999999999999999999999988753 33332 245667778888765 7777777765
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 104 RAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 104 ~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
..+..+..+ -..++.=|..... .=+.++|-.-+.+++++.+.
T Consensus 255 eiL~~~~~n------vKA~frRakAhaa-~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 255 EILRHHPGN------VKAYFRRAKAHAA-VWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHhcCCch------HHHHHHHHHHHHh-hcCHHHHHHHHHHHHhcChh
Confidence 554433322 3367777777776 36889999999999998654
No 231
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.71 E-value=0.099 Score=37.24 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+..+..-|.-.... |+|++|++.|+....-++-.. ....+-..|+.+|.+.|+|++|+..+++
T Consensus 10 ~~~ly~~a~~~l~~-~~Y~~A~~~le~L~~ryP~g~---ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 10 PQELYQEAQEALQK-GNYEEAIKQLEALDTRYPFGE---YAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred HHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCCCc---ccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 33455556666665 999999999999988887543 2346779999999999999999999875
No 232
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.71 E-value=0.017 Score=28.38 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q psy5288 120 KHHENIAEIYEKELEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~ 151 (186)
.++..+|.++... +++++|+.+|++++.+.+
T Consensus 2 ~~~~~~a~~~~~~-~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKL-GDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHH-hhHHHHHHHHHHHHccCC
Confidence 3678899999995 999999999999998754
No 233
>KOG2610|consensus
Probab=95.69 E-value=0.14 Score=41.68 Aligned_cols=143 Identities=15% Similarity=0.083 Sum_probs=93.8
Q ss_pred ccCCCCHHHHHHHHHHHHH--------------HHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH--HHHHHhcC
Q psy5288 30 FTGGNKTDEAIDLYVRAGN--------------LFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVD--AANCYKKS 93 (186)
Q Consensus 30 ~~~~~~~~~A~~~y~~ag~--------------~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~--a~~~y~~~ 93 (186)
++++|++.+|+..+.++.. .+...|+...-...+.+.+.-. ++...-..|.+ .+-...+.
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHHHHHHhhHHHh
Confidence 4577888888888888754 3555666666666555554422 11111111211 12222333
Q ss_pred -CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh
Q psy5288 94 -NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSAL 172 (186)
Q Consensus 94 -~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~ 172 (186)
-+++|-+..++|++|.+..-+ ....++-+++-. |+..++.++-++.-+..+.... .+..-|.+.|..++.
T Consensus 189 g~y~dAEk~A~ralqiN~~D~W------a~Ha~aHVlem~-~r~Keg~eFM~~ted~Wr~s~m--lasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCW------ASHAKAHVLEMN-GRHKEGKEFMYKTEDDWRQSWM--LASHNYWHTALFHIE 259 (491)
T ss_pred ccchhHHHHHHhhccCCCcchH------HHHHHHHHHHhc-chhhhHHHHHHhcccchhhhhH--HHhhhhHHHHHhhhc
Confidence 578999999999988765544 334467777876 8999999988877776663322 233567788999999
Q ss_pred ccCHHHHHHHHHh
Q psy5288 173 TDHLDKAIKLYEQ 185 (186)
Q Consensus 173 ~g~~~~A~~~~~~ 185 (186)
.+.|++|+++|++
T Consensus 260 ~aeye~aleIyD~ 272 (491)
T KOG2610|consen 260 GAEYEKALEIYDR 272 (491)
T ss_pred ccchhHHHHHHHH
Confidence 9999999999975
No 234
>KOG3785|consensus
Probab=95.68 E-value=0.17 Score=41.62 Aligned_cols=126 Identities=14% Similarity=0.092 Sum_probs=78.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy5288 49 LFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAE 127 (186)
Q Consensus 49 ~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~ 127 (186)
-|....+|..|+...+-...+ + .++....-.=+|.||..+ ++++|+..|.-+.+ ..+.+ +...++++-
T Consensus 31 dfls~rDytGAislLefk~~~----~-~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~----~~~~~--~el~vnLAc 99 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNL----D-REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN----KDDAP--AELGVNLAC 99 (557)
T ss_pred HHHhcccchhHHHHHHHhhcc----c-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc----cCCCC--cccchhHHH
Confidence 355677899998877655533 3 333334444578888877 99999998876543 22222 447788898
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----------HHhccCChHHHHH----------HHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 128 IYEKELEDQEKAIDHYQHAAD----------CYAGEENKSSANK----------CLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 128 ~y~~~lg~~~~Ai~~y~kA~~----------l~~~~~~~~~~~~----------~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
++-. ||.|.+|-..-.+|-+ +..+.++...... --..||.+..-.-.|++||++|.+|
T Consensus 100 c~Fy-Lg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 100 CKFY-LGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHH-HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888 6999998776544321 1111111111111 2244555556667899999999875
No 235
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.64 E-value=0.45 Score=35.77 Aligned_cols=119 Identities=16% Similarity=0.102 Sum_probs=78.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENI 125 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~l 125 (186)
++..-..|++.+|...|.+++.= -.-.-...+..+++.-... ++..|..-+++..+....-.. +....-+
T Consensus 96 a~al~elGr~~EA~~hy~qalsG-----~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~----pd~~Ll~ 166 (251)
T COG4700 96 ANALAELGRYHEAVPHYQQALSG-----IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS----PDGHLLF 166 (251)
T ss_pred HHHHHHhhhhhhhHHHHHHHhcc-----ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC----CCchHHH
Confidence 66777889999999999888762 2222223333444443333 777777776665555433333 3356678
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHH
Q psy5288 126 AEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKL 182 (186)
Q Consensus 126 g~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~ 182 (186)
|+.|..+ |.+.+|-..|+.++..++.- .....-++.+.++|+.++|-.-
T Consensus 167 aR~laa~-g~~a~Aesafe~a~~~ypg~-------~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 167 ARTLAAQ-GKYADAESAFEVAISYYPGP-------QARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHhc-CCchhHHHHHHHHHHhCCCH-------HHHHHHHHHHHHhcchhHHHHH
Confidence 9999994 99999999999999998753 2223346777888877766543
No 236
>KOG0551|consensus
Probab=95.63 E-value=0.2 Score=40.66 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=88.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy5288 66 AGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQ 144 (186)
Q Consensus 66 a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~ 144 (186)
+++..-.-|.++..+..|.+=|.-|.+. ++..|+.+|-+.+ -++.++++.-+.+|.|=+.+... ||+|-+||.-..
T Consensus 67 slK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Gl--k~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs 143 (390)
T KOG0551|consen 67 SLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGL--KKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCS 143 (390)
T ss_pred HhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHH--hhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHH
Confidence 3444334578889999999999888776 9999999998875 45677888888899999998887 799999999999
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 145 HAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 145 kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
+|+.+-+.. ..++++=|.++..+.++..|..-.+
T Consensus 144 ~al~~~P~h------~Ka~~R~Akc~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 144 AALKLKPTH------LKAYIRGAKCLLELERFAEAVNWCE 177 (390)
T ss_pred HHHhcCcch------hhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 999986543 3677788888888888887776554
No 237
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.57 E-value=0.52 Score=38.97 Aligned_cols=117 Identities=11% Similarity=0.067 Sum_probs=77.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIA 126 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg 126 (186)
+.-+-..|++++|-+....+++ +..|+. +.....+..-.++..-++..++.+.-+.+. +..+..||
T Consensus 270 a~~li~l~~~~~A~~~i~~~Lk---~~~D~~-----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~------p~L~~tLG 335 (400)
T COG3071 270 AERLIRLGDHDEAQEIIEDALK---RQWDPR-----LCRLIPRLRPGDPEPLIKAAEKWLKQHPED------PLLLSTLG 335 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHH---hccChh-----HHHHHhhcCCCCchHHHHHHHHHHHhCCCC------hhHHHHHH
Confidence 3345567888888776555554 333443 212222222225555555555554333222 25788999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 127 EIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 127 ~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.++..+ +.+.+|-.+++.|+..-+. ...+..+|.++.++|+..+|-+.+++
T Consensus 336 ~L~~k~-~~w~kA~~~leaAl~~~~s-------~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 336 RLALKN-KLWGKASEALEAALKLRPS-------ASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHh-hHHHHHHHHHHHHHhcCCC-------hhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 999997 9999999999999886443 35778899999999999999988764
No 238
>KOG2041|consensus
Probab=95.50 E-value=1 Score=40.31 Aligned_cols=135 Identities=13% Similarity=0.095 Sum_probs=72.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHH-----HcC----ChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH---------H
Q psy5288 49 LFKLGKKWNDGGNAFLQAGTLHL-----KNN----NKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEI---------H 109 (186)
Q Consensus 49 ~~~~~g~~~~A~~~y~~a~~~~~-----~~~----~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i---------~ 109 (186)
.|....+-+-|++.+.+.++.++ +.| +-.+.-.++.++|..+... .+.+|.++|.+.-.. .
T Consensus 756 ~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~l 835 (1189)
T KOG2041|consen 756 LYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRL 835 (1189)
T ss_pred hhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHH
Confidence 33344455555665555555433 111 2234456788888888766 788888888654332 1
Q ss_pred HHcCChhHHHH-------HHHHHHHHHHHhcCCHHHHHHHH-------------------HHHHHHHhccCChHHHHHHH
Q psy5288 110 TDMGRFIMVAK-------HHENIAEIYEKELEDQEKAIDHY-------------------QHAADCYAGEENKSSANKCL 163 (186)
Q Consensus 110 ~~~~~~~~~a~-------~~~~lg~~y~~~lg~~~~Ai~~y-------------------~kA~~l~~~~~~~~~~~~~~ 163 (186)
..-+..+..+. .+-.+|.++.+. |.-++|+++| .+|+++.++-..+.. ....
T Consensus 836 e~f~~LE~la~~Lpe~s~llp~~a~mf~sv-GMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv-~tli 913 (1189)
T KOG2041|consen 836 ELFGELEVLARTLPEDSELLPVMADMFTSV-GMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQV-QTLI 913 (1189)
T ss_pred HhhhhHHHHHHhcCcccchHHHHHHHHHhh-chHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhH-HHHH
Confidence 11122222222 345667777774 7777777776 344554443332222 1222
Q ss_pred HHHHHHHHhccCHHHHHHHHHh
Q psy5288 164 IKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 164 ~~la~~y~~~g~~~~A~~~~~~ 185 (186)
-+-+.-+...++.-+||+.+.+
T Consensus 914 ak~aaqll~~~~~~eaIe~~Rk 935 (1189)
T KOG2041|consen 914 AKQAAQLLADANHMEAIEKDRK 935 (1189)
T ss_pred HHHHHHHHhhcchHHHHHHhhh
Confidence 3334445566777777776643
No 239
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.49 E-value=0.42 Score=37.76 Aligned_cols=131 Identities=18% Similarity=0.244 Sum_probs=87.5
Q ss_pred CCCCHHHHHHHHHHHHH------------HHH----hcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC--
Q psy5288 32 GGNKTDEAIDLYVRAGN------------LFK----LGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-- 93 (186)
Q Consensus 32 ~~~~~~~A~~~y~~ag~------------~~~----~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-- 93 (186)
..+++..+...|..+.. +|. ...+..+|++.|..+++. +......++|.+|...
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~--------g~~~a~~~lg~~~~~G~g 124 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--------GLAEALFNLGLMYANGRG 124 (292)
T ss_pred ccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc--------ccHHHHHhHHHHHhcCCC
Confidence 45788999999888863 122 123466666666644331 2234455789999773
Q ss_pred ---CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHhccCChHHHHHH
Q psy5288 94 ---NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELE--------DQEKAIDHYQHAADCYAGEENKSSANKC 162 (186)
Q Consensus 94 ---~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg--------~~~~Ai~~y~kA~~l~~~~~~~~~~~~~ 162 (186)
++.+|..+|++|.+. |+... +.....+|.+|.. | +...|+.+|.+|.... + ...
T Consensus 125 v~~d~~~A~~~~~~Aa~~----g~~~a-~~~~~~l~~~~~~--g~~~~~~~~~~~~A~~~~~~aa~~~----~----~~a 189 (292)
T COG0790 125 VPLDLVKALKYYEKAAKL----GNVEA-ALAMYRLGLAYLS--GLQALAVAYDDKKALYLYRKAAELG----N----PDA 189 (292)
T ss_pred cccCHHHHHHHHHHHHHc----CChhH-HHHHHHHHHHHHc--ChhhhcccHHHHhHHHHHHHHHHhc----C----HHH
Confidence 789999999999754 33222 4567888888886 3 2236777777777753 1 256
Q ss_pred HHHHHHHHHh----ccCHHHHHHHHHh
Q psy5288 163 LIKIANYSAL----TDHLDKAIKLYEQ 185 (186)
Q Consensus 163 ~~~la~~y~~----~g~~~~A~~~~~~ 185 (186)
..++|.+|.. ..|+.+|...|.+
T Consensus 190 ~~~lg~~y~~G~Gv~~d~~~A~~wy~~ 216 (292)
T COG0790 190 QLLLGRMYEKGLGVPRDLKKAFRWYKK 216 (292)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHH
Confidence 6788888865 3489999998875
No 240
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.48 E-value=0.034 Score=30.29 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
|.++..||.+-... ++|++|+.-|+++++|..+
T Consensus 1 Adv~~~Lgeisle~-e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 1 ADVYDLLGEISLEN-ENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred CcHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHH
Confidence 35788999998885 9999999999999999764
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.47 E-value=0.023 Score=31.71 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 161 KCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 161 ~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
..+..+|.+|..+|++++|++.|+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46789999999999999999999874
No 242
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.31 E-value=0.88 Score=34.23 Aligned_cols=100 Identities=15% Similarity=0.184 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 76 KHDAGLCFVDAANCYKKSNP--AEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 76 ~~~aa~~~~~a~~~y~~~~~--~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
...++..|.++.+.-....+ ..+++ .+...++..--+.-....++..+.+. +++++|...++.++..-.+.
T Consensus 50 ~~~AS~~Y~~~i~~~~ak~~~~~~~~e------kf~~~n~~t~Ya~laaL~lAk~~ve~-~~~d~A~aqL~~~l~~t~De 122 (207)
T COG2976 50 AQEASAQYQNAIKAVQAKKPKSIAAAE------KFVQANGKTIYAVLAALELAKAEVEA-NNLDKAEAQLKQALAQTKDE 122 (207)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHH------HHHhhccccHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHccchhH
Confidence 34556666666666544322 22222 23334444444555667788888886 99999999999999864332
Q ss_pred CChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 154 ENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 154 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
....-.-.+||.|...+|.+++|++.++.
T Consensus 123 ---~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 123 ---NLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred ---HHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 23345668999999999999999998864
No 243
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.21 E-value=0.06 Score=29.31 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKN 73 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~ 73 (186)
++|...|.+....++|++|++=|.+++++.+++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 567788888888888888888888888887664
No 244
>KOG2047|consensus
Probab=95.13 E-value=1.4 Score=38.95 Aligned_cols=137 Identities=20% Similarity=0.216 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH------c
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTD------M 112 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~------~ 112 (186)
-+++...+.+|...|+.+.|...|+++..+--+ .-+.-+..|.+.|.+=... +++.|++..++|.-+=+. .
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~--~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYK--TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc--chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 355666688999999999999999999987211 2234467777777665544 888999999888754211 1
Q ss_pred CChhHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 113 GRFIMVA------KHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 113 ~~~~~~a------~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
|..+.++ .++...+.+.++ +|-++.....|++.+++--.. .++..|.|..+..-.-++++.+.|++
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs-~gtfestk~vYdriidLriaT------Pqii~NyAmfLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEES-LGTFESTKAVYDRIIDLRIAT------PQIIINYAMFLEEHKYFEESFKAYER 536 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 2223333 345566666666 688888888888888873322 35668888999888899999998886
No 245
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=95.10 E-value=1.3 Score=42.39 Aligned_cols=142 Identities=11% Similarity=0.064 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC--------------------------
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-------------------------- 93 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-------------------------- 93 (186)
.......|+.|...|++.+|+..|..|+.+.++.+|+-..|.++.-++-+..-.
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~ 321 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSS 321 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCcc
Confidence 344555688899999999999999999999999999888887777664332110
Q ss_pred --------------------------------------CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC-
Q psy5288 94 --------------------------------------NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELE- 134 (186)
Q Consensus 94 --------------------------------------~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg- 134 (186)
.+++++.+|.++.....+.--.---..+..+++++.... .
T Consensus 322 s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~-~~ 400 (1185)
T PF08626_consen 322 SPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ-HL 400 (1185)
T ss_pred CcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh-hc
Confidence 124555555555433222211223445677788887764 5
Q ss_pred -------------------CHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHH
Q psy5288 135 -------------------DQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKL 182 (186)
Q Consensus 135 -------------------~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~ 182 (186)
.-.++.++..+++.+.-..=........+..+|.+|..+|-..|+.=+
T Consensus 401 ~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFv 467 (1185)
T PF08626_consen 401 SDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFV 467 (1185)
T ss_pred ccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 678888999999987554334455568999999999999977766433
No 246
>KOG2796|consensus
Probab=95.02 E-value=0.47 Score=37.56 Aligned_cols=122 Identities=10% Similarity=-0.053 Sum_probs=79.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q psy5288 52 LGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYE 130 (186)
Q Consensus 52 ~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~ 130 (186)
..|.|.=..+.+.+..+ .+++........+|.+-+.. +..-|-.+++..-+....+++....-.+..+.+.+|.
T Consensus 189 G~kEy~iS~d~~~~vi~-----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l 263 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIK-----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL 263 (366)
T ss_pred cchhhhhhHHHHHHHHH-----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee
Confidence 34445545555544444 13344444555666665554 6666777777666666666666666667778888888
Q ss_pred HhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 131 KELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 131 ~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
-+ .++-.|...|.+.+...+.+ ....++.|.+...+|+...|++..+.
T Consensus 264 g~-nn~a~a~r~~~~i~~~D~~~------~~a~NnKALcllYlg~l~DAiK~~e~ 311 (366)
T KOG2796|consen 264 GQ-NNFAEAHRFFTEILRMDPRN------AVANNNKALCLLYLGKLKDALKQLEA 311 (366)
T ss_pred cc-cchHHHHHHHhhccccCCCc------hhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 75 88888888888777653322 24557778888888888888887764
No 247
>KOG3024|consensus
Probab=95.01 E-value=1.4 Score=35.00 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC
Q psy5288 32 GGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS 93 (186)
Q Consensus 32 ~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~ 93 (186)
..|++-+|-..|..+...|.+.+.++.|++.....+.++-+.+....++....-..+++.+.
T Consensus 18 ~~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka 79 (312)
T KOG3024|consen 18 ELGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKA 79 (312)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHH
Confidence 34799999999999999999999999999999999999888888888887777777777663
No 248
>KOG2471|consensus
Probab=95.01 E-value=0.089 Score=44.75 Aligned_cols=84 Identities=10% Similarity=0.058 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHH-HHHHc--C-C--------hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERAVE-IHTDM--G-R--------FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAA 147 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~Al~-i~~~~--~-~--------~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~ 147 (186)
..+.++|-++... .+.-+..+|++|++ ...++ | . ....-.++.+.|..|.. +|++-.|.++|.+|+
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh-~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH-SGRPLLAFQCFQKAV 362 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh-cCCcHHHHHHHHHHH
Confidence 3446788887776 77888899999996 33332 2 0 11233478999999999 699999999999999
Q ss_pred HHHhccCChHHHHHHHHHHHHHHH
Q psy5288 148 DCYAGEENKSSANKCLIKIANYSA 171 (186)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~la~~y~ 171 (186)
..|..+. ..|.++|++.+
T Consensus 363 ~vfh~nP------rlWLRlAEcCi 380 (696)
T KOG2471|consen 363 HVFHRNP------RLWLRLAECCI 380 (696)
T ss_pred HHHhcCc------HHHHHHHHHHH
Confidence 9998753 78999999875
No 249
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.94 E-value=0.68 Score=36.69 Aligned_cols=87 Identities=16% Similarity=0.071 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc---cC-----ChHHHHH
Q psy5288 93 SNPAEAIKAIERAVEIHTDM--GRFIMVAKHHENIAEIYEKELE-DQEKAIDHYQHAADCYAG---EE-----NKSSANK 161 (186)
Q Consensus 93 ~~~~~A~~~~~~Al~i~~~~--~~~~~~a~~~~~lg~~y~~~lg-~~~~Ai~~y~kA~~l~~~---~~-----~~~~~~~ 161 (186)
.+.+.|..++.|+-.+.... ......+..+.++|.-..+. + +++.|+.++++|.++... .. -......
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~-~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSK-KDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 36777888888877766411 23456778899999998886 8 999999999999999743 11 1123346
Q ss_pred HHHHHHHHHHhccCHHHHH
Q psy5288 162 CLIKIANYSALTDHLDKAI 180 (186)
Q Consensus 162 ~~~~la~~y~~~g~~~~A~ 180 (186)
++.-++.+|...+.++-..
T Consensus 86 iL~~La~~~l~~~~~~~~~ 104 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVE 104 (278)
T ss_pred HHHHHHHHHHcCCChHHHH
Confidence 8899999999887665433
No 250
>KOG4814|consensus
Probab=94.88 E-value=0.33 Score=42.64 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHH
Q psy5288 81 LCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSAN 160 (186)
Q Consensus 81 ~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~ 160 (186)
..|..+...|+..+|..++++|..++..+.....-..-+.....++-||.. |.+.|.|.+++++|-+.-+.+-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~-L~QLD~A~E~~~EAE~~d~~~~------ 428 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK-LEQLDNAVEVYQEAEEVDRQSP------ 428 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhccccH------
Confidence 345556677777789999999999999887665555568999999999999 6999999999999988754321
Q ss_pred HHHHHHHHHHHhccCHHHHHHHH
Q psy5288 161 KCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 161 ~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
-+-..+-.+..-.|+-.+|+.+.
T Consensus 429 l~q~~~~~~~~~E~~Se~AL~~~ 451 (872)
T KOG4814|consen 429 LCQLLMLQSFLAEDKSEEALTCL 451 (872)
T ss_pred HHHHHHHHHHHHhcchHHHHHHH
Confidence 12222233444556666666554
No 251
>KOG4642|consensus
Probab=94.85 E-value=0.073 Score=41.22 Aligned_cols=88 Identities=20% Similarity=0.149 Sum_probs=71.1
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHH
Q psy5288 85 DAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCL 163 (186)
Q Consensus 85 ~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~ 163 (186)
+=|+.|... .++.|+.+|-+|+.+.... +.++.+=+.+|.+ +.+++.+..-..+|+++.++. ....
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~------~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~------vk~h 81 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTV------ASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNL------VKAH 81 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCc------chhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHH------HHHH
Confidence 334444433 7899999999998876554 4588889999998 599999999999999996643 3566
Q ss_pred HHHHHHHHhccCHHHHHHHHHh
Q psy5288 164 IKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 164 ~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..+|........|++||.++.+
T Consensus 82 ~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 82 YFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred HHHHHHHHhhccccHHHHHHHH
Confidence 7889999999999999999875
No 252
>KOG1070|consensus
Probab=94.74 E-value=3.2 Score=39.95 Aligned_cols=114 Identities=17% Similarity=0.138 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q psy5288 54 KKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKE 132 (186)
Q Consensus 54 g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~ 132 (186)
|.-+.-.+.|++|.+. ..+-..|..+..+|.+. .+++|.+.++.-++=+. +.-.+|...|..+..+
T Consensus 1511 G~eesl~kVFeRAcqy-------cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQY-------CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred CcHHHHHHHHHHHHHh-------cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhcc
Confidence 3334444555555554 44567777888888876 78888888876544333 3344778888888876
Q ss_pred cCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 133 LEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 133 lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+.+.|-..+++|+...++..+ .......|.+-.+.||-+++...|+-
T Consensus 1578 -ne~~aa~~lL~rAL~~lPk~eH----v~~IskfAqLEFk~GDaeRGRtlfEg 1625 (1710)
T KOG1070|consen 1578 -NEAEAARELLKRALKSLPKQEH----VEFISKFAQLEFKYGDAERGRTLFEG 1625 (1710)
T ss_pred -cHHHHHHHHHHHHHhhcchhhh----HHHHHHHHHHHhhcCCchhhHHHHHH
Confidence 7778888999999999887332 25667788888899999998888763
No 253
>KOG2300|consensus
Probab=94.53 E-value=2.7 Score=36.04 Aligned_cols=107 Identities=12% Similarity=-0.025 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHH
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNK-HDAGLCFVDAANCYKKS--NPAEAIKAIERAVEIHT 110 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~-~~aa~~~~~a~~~y~~~--~~~~A~~~~~~Al~i~~ 110 (186)
+.--+|.+.+.-...+|....+.+.|....++|..+.+.+++. +..-.++.-++.+|... .++.|...+++|+++..
T Consensus 41 s~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq 120 (629)
T KOG2300|consen 41 SFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQ 120 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Confidence 3446788888777888999999999999999999999999877 44456666778888654 56788888999998876
Q ss_pred HcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5288 111 DMGRFIMVAKHHENIAEIYEKELEDQEKAIDHY 143 (186)
Q Consensus 111 ~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y 143 (186)
..- .---.....++.++.-+ .+++.|++.+
T Consensus 121 ~~p--~wsckllfQLaql~~id-kD~~sA~elL 150 (629)
T KOG2300|consen 121 SVP--YWSCKLLFQLAQLHIID-KDFPSALELL 150 (629)
T ss_pred CCc--hhhHHHHHHHHHHHhhh-ccchhHHHHH
Confidence 543 22234667888888886 8999999884
No 254
>KOG1550|consensus
Probab=94.51 E-value=1.3 Score=38.82 Aligned_cols=130 Identities=18% Similarity=0.230 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHH------------HHH-----hcCCHHHHHHHHHHHHHHHHH---cCChhHHHHHHHHHHHHHhcC--
Q psy5288 36 TDEAIDLYVRAGN------------LFK-----LGKKWNDGGNAFLQAGTLHLK---NNNKHDAGLCFVDAANCYKKS-- 93 (186)
Q Consensus 36 ~~~A~~~y~~ag~------------~~~-----~~g~~~~A~~~y~~a~~~~~~---~~~~~~aa~~~~~a~~~y~~~-- 93 (186)
..++..+|..+.. +|. ..+|.+.|+++|..+++-+++ .+. ..+...+|.+|...
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~----~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL----PPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC----CccccHHHHHHhcCCC
Confidence 4677777777732 222 346899999999999884221 221 23455788888764
Q ss_pred ----CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy5288 94 ----NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKEL--EDQEKAIDHYQHAADCYAGEENKSSANKCLIKIA 167 (186)
Q Consensus 94 ----~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~l--g~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la 167 (186)
+...|+.+|.+|.+ +|++ .+...+|.+|..-. .++.+|.++|..|... ++ .....+++
T Consensus 304 ~~~~d~~~A~~~~~~aA~----~g~~----~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----G~----~~A~~~la 367 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAE----LGNP----DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA----GH----ILAIYRLA 367 (552)
T ss_pred CccccHHHHHHHHHHHHh----cCCc----hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc----CC----hHHHHHHH
Confidence 45678888877753 3443 25677888887631 2466888888877763 22 24556666
Q ss_pred HHHHh----ccCHHHHHHHHHh
Q psy5288 168 NYSAL----TDHLDKAIKLYEQ 185 (186)
Q Consensus 168 ~~y~~----~g~~~~A~~~~~~ 185 (186)
.+|.. .-+...|..+|.+
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~ 389 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKK 389 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHH
Confidence 66653 2366777766654
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.50 E-value=2.1 Score=34.48 Aligned_cols=128 Identities=15% Similarity=0.139 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHH-----
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVE-IHT----- 110 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~-i~~----- 110 (186)
++-..++.+.+.+.+..|+++-|..+..++.......+.. .....+..+=..+...+..+|+..++..+. ...
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 4555566666666666777776666655555432111110 111222222233334466788887777776 221
Q ss_pred ----------------------HcCChhHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHhccCChHHHHHH
Q psy5288 111 ----------------------DMGRFIMVAKHHENIAEIYEKEL------EDQEKAIDHYQHAADCYAGEENKSSANKC 162 (186)
Q Consensus 111 ----------------------~~~~~~~~a~~~~~lg~~y~~~l------g~~~~Ai~~y~kA~~l~~~~~~~~~~~~~ 162 (186)
...+....+.++..+|..... + +..+.++..|.+|..+.+... ..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~------k~ 294 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWE------KA 294 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHH------HH
Confidence 112346778888888888776 6 889999999999999866432 46
Q ss_pred HHHHHHHHHh
Q psy5288 163 LIKIANYSAL 172 (186)
Q Consensus 163 ~~~la~~y~~ 172 (186)
+..+|..+..
T Consensus 295 ~~~~a~~~~~ 304 (352)
T PF02259_consen 295 WHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHH
Confidence 6666666644
No 256
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.46 E-value=0.73 Score=36.59 Aligned_cols=80 Identities=13% Similarity=0.109 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhc
Q psy5288 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALT 173 (186)
Q Consensus 94 ~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~ 173 (186)
..+.|...|.+|+ +.+ ...-.+|...|.+.....++.+.|...|+.++..+... ...|..-...++..
T Consensus 16 g~~~aR~vF~~a~----~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 16 GIEAARKVFKRAR----KDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------PDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHH----CCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHH----cCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHh
Confidence 4577888888885 222 22234688888885552367777999999999999875 35666777888999
Q ss_pred cCHHHHHHHHHh
Q psy5288 174 DHLDKAIKLYEQ 185 (186)
Q Consensus 174 g~~~~A~~~~~~ 185 (186)
++.++|..+|++
T Consensus 84 ~d~~~aR~lfer 95 (280)
T PF05843_consen 84 NDINNARALFER 95 (280)
T ss_dssp T-HHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999999987
No 257
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.43 E-value=0.7 Score=38.28 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=68.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy5288 53 GKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS----------NPAEAIKAIERAVEIHTDMGRFIMVAKHH 122 (186)
Q Consensus 53 ~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~----------~~~~A~~~~~~Al~i~~~~~~~~~~a~~~ 122 (186)
.|+.++|++....++.- +.......|.-+|.+|+.. ..++|+.+|+++-++-... +.+
T Consensus 195 ~gdre~Al~il~~~l~~-----~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~--Y~G----- 262 (374)
T PF13281_consen 195 PGDREKALQILLPVLES-----DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY--YSG----- 262 (374)
T ss_pred CCCHHHHHHHHHHHHhc-----cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc--cch-----
Confidence 78888888877665432 2334456777888888764 3578999999987776222 222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----HHHhccCChHHHHH--HHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 123 ENIAEIYEKELEDQEKAIDHYQHAA----DCYAGEENKSSANK--CLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 123 ~~lg~~y~~~lg~~~~Ai~~y~kA~----~l~~~~~~~~~~~~--~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.|++.++.-. |.-.....-..+.. .+..+.+....... .+-.++++.+..||+++|++.+++
T Consensus 263 IN~AtLL~~~-g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~ 330 (374)
T PF13281_consen 263 INAATLLMLA-GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEK 330 (374)
T ss_pred HHHHHHHHHc-CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444432 44333322222222 11111111111112 224566778889999999998876
No 258
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.35 E-value=1.2 Score=31.24 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=63.4
Q ss_pred hHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Q psy5288 4 NEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAI---------DLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNN 74 (186)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~---------~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~ 74 (186)
.++.+.+.+.+|-...+ ..|+..+ ....|-... +.....+..+...|++++|+....+++.+
T Consensus 21 ~~~~~~~~~~~al~ly~---G~~l~~~-~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~----- 91 (146)
T PF03704_consen 21 DPEEAIELLEEALALYR---GDFLPDL-DDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL----- 91 (146)
T ss_dssp -HHHHHHHHHHHHTT-----SSTTGGG-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHHHhC---CCCCCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-----
Confidence 45667777777777777 5665432 112443332 33344456677899999999999999998
Q ss_pred ChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH-HcCCh
Q psy5288 75 NKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHT-DMGRF 115 (186)
Q Consensus 75 ~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~-~~~~~ 115 (186)
+|..... +..+..+|... ++..|++.|++....+. ++|-.
T Consensus 92 dP~~E~~-~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 92 DPYDEEA-YRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp STT-HHH-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred CCCCHHH-HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 5665543 44566666655 89999999999888776 44643
No 259
>KOG4340|consensus
Probab=94.22 E-value=0.76 Score=37.05 Aligned_cols=86 Identities=13% Similarity=0.076 Sum_probs=56.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----Hhcc--------------
Q psy5288 92 KSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADC----YAGE-------------- 153 (186)
Q Consensus 92 ~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l----~~~~-------------- 153 (186)
..+++.|++-|+.|+++. |-.+. .-.+++.++.+. ++|++|+.+..+.++- .++.
T Consensus 157 egqyEaAvqkFqaAlqvs---Gyqpl---lAYniALaHy~~-~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsv 229 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVS---GYQPL---LAYNLALAHYSS-RQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSV 229 (459)
T ss_pred cccHHHHHHHHHHHHhhc---CCCch---hHHHHHHHHHhh-hhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcc
Confidence 347889999999887664 32222 456788888886 9999999987665543 2221
Q ss_pred CCh-----HHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 154 ENK-----SSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 154 ~~~-----~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
+++ +.....++-.+-++.+.|+++-|.+.+.
T Consensus 230 gNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 230 GNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred cchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 111 1222345555667788999999888764
No 260
>KOG1550|consensus
Probab=94.20 E-value=1.5 Score=38.41 Aligned_cols=110 Identities=19% Similarity=0.253 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHH---HHHcCChhHHHHHHHHHH
Q psy5288 56 WNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS------NPAEAIKAIERAVEI---HTDMGRFIMVAKHHENIA 126 (186)
Q Consensus 56 ~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~------~~~~A~~~~~~Al~i---~~~~~~~~~~a~~~~~lg 126 (186)
...|.++|..+.+. | -......+|.||... +++.|+.+++.+++- ....+. ......+|
T Consensus 228 ~~~a~~~~~~~a~~----g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~----~~a~~~lg 295 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL----G----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL----PPAQYGLG 295 (552)
T ss_pred hhHHHHHHHHHHhh----c----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC----CccccHHH
Confidence 45677777666664 1 234444778888654 899999999999883 222232 22567799
Q ss_pred HHHHHhc---C-CHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcc---CHHHHHHHHHh
Q psy5288 127 EIYEKEL---E-DQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTD---HLDKAIKLYEQ 185 (186)
Q Consensus 127 ~~y~~~l---g-~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g---~~~~A~~~~~~ 185 (186)
.+|.... . +++.|..+|.+|.+. +++ .+...+|.+|...- |+.+|.++|..
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~----g~~----~a~~~lg~~~~~g~~~~d~~~A~~yy~~ 353 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAEL----GNP----DAQYLLGVLYETGTKERDYRRAFEYYSL 353 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhc----CCc----hHHHHHHHHHHcCCccccHHHHHHHHHH
Confidence 9998720 2 678899999999885 222 45567788876544 78899999875
No 261
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=94.14 E-value=0.43 Score=37.67 Aligned_cols=94 Identities=11% Similarity=0.091 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q psy5288 79 AGLCFVDAANCYKKS----NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE 154 (186)
Q Consensus 79 aa~~~~~a~~~y~~~----~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~ 154 (186)
-+.++.++..+|..- .+..|.++..+|+.....-|+...++-|-..-+..|.. +.+|+.|.-||.+|..++.+..
T Consensus 35 ~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~-ik~Ye~a~~~F~~A~~~~~~d~ 113 (368)
T COG5091 35 KAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFN-IKDYELAQSYFKKAKNLYVDDT 113 (368)
T ss_pred hhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhh-HHHHHHHHHHHHHHHHHhhccc
Confidence 356666766666553 57899999999999999999999999998889999888 6999999999999999999988
Q ss_pred ChHHHHHHHHHHHHHHHhc
Q psy5288 155 NKSSANKCLIKIANYSALT 173 (186)
Q Consensus 155 ~~~~~~~~~~~la~~y~~~ 173 (186)
.+.|..+.-..|-.+..++
T Consensus 114 L~~We~rLet~L~~~~kkQ 132 (368)
T COG5091 114 LPLWEDRLETKLNKKNKKQ 132 (368)
T ss_pred chHHHHHHHHHHhHhhHhh
Confidence 8877765444444444433
No 262
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.12 E-value=0.21 Score=37.05 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcc-----------CHHHHHHHHHh
Q psy5288 134 EDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTD-----------HLDKAIKLYEQ 185 (186)
Q Consensus 134 g~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g-----------~~~~A~~~~~~ 185 (186)
..+++||.-|++|+.|.++. -..+.++|++|..++ .|++|.++|++
T Consensus 49 ~miedAisK~eeAL~I~P~~------hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNK------HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCch------HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 34788888889999987753 267788888886443 25556666553
No 263
>KOG3081|consensus
Probab=94.06 E-value=1.4 Score=34.88 Aligned_cols=71 Identities=14% Similarity=0.011 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCC-hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHH
Q psy5288 103 ERAVEIHTDMGR-FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAI 180 (186)
Q Consensus 103 ~~Al~i~~~~~~-~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~ 180 (186)
+.|.-|+.++.+ +......+...+.+... +|+|++|...++.|+.-..+. ..++.|+-.+-.-+|.-.++.
T Consensus 190 qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~~~eeAe~lL~eaL~kd~~d------petL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 190 QDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LGRYEEAESLLEEALDKDAKD------PETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred hhHHHHHHHHhcccCCChHHHccHHHHHHH-hcCHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHHhCCChHHH
Confidence 344445555533 55555667777777777 488888888888888764433 366677666666666655444
No 264
>KOG2581|consensus
Probab=93.90 E-value=2.6 Score=35.35 Aligned_cols=110 Identities=13% Similarity=0.021 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChh
Q psy5288 39 AIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNN-NKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFI 116 (186)
Q Consensus 39 A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~-~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~ 116 (186)
++.+|.-...+|...|+...-.-++..-+... .++ +..+.+....-+-.+|... .+++|-..-.++. +.+.....
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA-tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snn 244 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTA-TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNN 244 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh-hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccH
Confidence 33444444556666776555434433333332 333 5666666665566666654 5566655554432 23333334
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 117 MVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
..|.++.-+|.|-.-+ ++|..|.+++-+|+...+.
T Consensus 245 e~ARY~yY~GrIkaiq-ldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQ-LDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHhhHHHhh-cchhHHHHHHHHHHHhCcc
Confidence 7888999999999887 8999999999999999885
No 265
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.90 E-value=0.15 Score=25.01 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 161 KCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 161 ~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+...+|.++...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3567899999999999999998864
No 266
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.83 E-value=0.09 Score=25.57 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 161 KCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 161 ~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.++.++|.++...|++++|+..|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~ 26 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEK 26 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4678999999999999999999875
No 267
>KOG4507|consensus
Probab=93.73 E-value=0.084 Score=45.84 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=73.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENI 125 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~l 125 (186)
|.-.+..|+...|+.|...|... .|.+.-...-+++.+..+. -...|-.++.+++.|.-.. .-.+..+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~-----~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~se------pl~~~~~ 682 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNL-----APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSE------PLTFLSL 682 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhcc-----ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccC------chHHHhc
Confidence 33455689999999999998876 5666666667788777665 6678888999998887221 2367788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 126 AEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 126 g~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
|++|.- |.+.+.|++.+.+|+++.++.
T Consensus 683 g~~~l~-l~~i~~a~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 683 GNAYLA-LKNISGALEAFRQALKLTTKC 709 (886)
T ss_pred chhHHH-HhhhHHHHHHHHHHHhcCCCC
Confidence 999998 799999999999999987653
No 268
>KOG1538|consensus
Probab=93.36 E-value=2.2 Score=37.93 Aligned_cols=135 Identities=7% Similarity=-0.013 Sum_probs=67.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC------C-HHH-----------HHHHHHHHHHHHHH
Q psy5288 50 FKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS------N-PAE-----------AIKAIERAVEIHTD 111 (186)
Q Consensus 50 ~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~------~-~~~-----------A~~~~~~Al~i~~~ 111 (186)
|...|..++--..-.|=++..+..+.|.-++..+..+|+.-... . .+- -.+-.+.....++.
T Consensus 680 ~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~ 759 (1081)
T KOG1538|consen 680 FLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKK 759 (1081)
T ss_pred HhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhh
Confidence 33444444444445555666666777777777777666443321 1 111 12334444445566
Q ss_pred cCChhHHHHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHHHHhccCHHHHHH
Q psy5288 112 MGRFIMVAKHHENIAEIY------EKELEDQEKAIDHYQHAADCYAGEENK----SSANKCLIKIANYSALTDHLDKAIK 181 (186)
Q Consensus 112 ~~~~~~~a~~~~~lg~~y------~~~lg~~~~Ai~~y~kA~~l~~~~~~~----~~~~~~~~~la~~y~~~g~~~~A~~ 181 (186)
...+..++.++.++|..- .+ .+++++|...-++-=++.+..-.+ .....-+...-..|.+.|+-.+|..
T Consensus 760 l~~~gLAaeIF~k~gD~ksiVqlHve-~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~ 838 (1081)
T KOG1538|consen 760 LDSPGLAAEIFLKMGDLKSLVQLHVE-TQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQ 838 (1081)
T ss_pred ccccchHHHHHHHhccHHHHhhheee-cccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHH
Confidence 667777777777766552 23 366777666544443332221111 0111122233334555555555555
Q ss_pred HHHh
Q psy5288 182 LYEQ 185 (186)
Q Consensus 182 ~~~~ 185 (186)
++++
T Consensus 839 vLeQ 842 (1081)
T KOG1538|consen 839 VLEQ 842 (1081)
T ss_pred HHHH
Confidence 5544
No 269
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=93.28 E-value=1.2 Score=28.18 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
|.-+...|.-.-+. |+|++|+.+|++|++++..
T Consensus 6 Ai~~a~~Ave~D~~-g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 6 AVQFARLAVQRDQE-GRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHH
Confidence 34444555555665 9999999999999999765
No 270
>KOG4648|consensus
Probab=93.25 E-value=0.85 Score=37.46 Aligned_cols=92 Identities=23% Similarity=0.250 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHc
Q psy5288 8 ARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKN 73 (186)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~ 73 (186)
++.|+.++-. ++..+-.||+ -|+|++|++||.++ +..|.++.+|..|-.-...|+.+.+.
T Consensus 90 ~~~LL~~~SE-iKE~GN~yFK----QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~- 163 (536)
T KOG4648|consen 90 AQQLLKKASE-IKERGNTYFK----QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL- 163 (536)
T ss_pred HHHHHHhhHH-HHHhhhhhhh----ccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-
Confidence 3445555433 2213345444 48999999999998 34566777777666655555554221
Q ss_pred CChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Q psy5288 74 NNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHT 110 (186)
Q Consensus 74 ~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~ 110 (186)
=..+|.+=+..-..+ ...+|.+-|+.++++-.
T Consensus 164 -----Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 164 -----YVKAYSRRMQARESLGNNMEAKKDCETVLALEP 196 (536)
T ss_pred -----HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCc
Confidence 122233322222222 45666666666666543
No 271
>KOG4507|consensus
Probab=93.17 E-value=0.15 Score=44.35 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=69.3
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHH
Q psy5288 86 AANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLI 164 (186)
Q Consensus 86 a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~ 164 (186)
+|..++.. ++..|+.|++.|+..-....+ ..+++|+.+.... |....|-.++.+++.+.-.. .-.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~-----v~~v~la~~~~~~-~~~~da~~~l~q~l~~~~se------pl~~~ 680 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQD-----VPLVNLANLLIHY-GLHLDATKLLLQALAINSSE------PLTFL 680 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhc-----ccHHHHHHHHHHh-hhhccHHHHHHHHHhhcccC------chHHH
Confidence 34444444 889999999999876655544 3578899998885 88999999999999996322 25667
Q ss_pred HHHHHHHhccCHHHHHHHHHh
Q psy5288 165 KIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 165 ~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+|+.|..+.+.++|++.|.+
T Consensus 681 ~~g~~~l~l~~i~~a~~~~~~ 701 (886)
T KOG4507|consen 681 SLGNAYLALKNISGALEAFRQ 701 (886)
T ss_pred hcchhHHHHhhhHHHHHHHHH
Confidence 889999999999999999865
No 272
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=92.82 E-value=3.2 Score=31.31 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=68.5
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHH
Q psy5288 85 DAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCL 163 (186)
Q Consensus 85 ~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~ 163 (186)
.++....++ ++.+|..+|++|+. |-+..-+..+..+++..-. ++++..|...+++..+..+.-..+ ...
T Consensus 94 rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA~Aqfa-~~~~A~a~~tLe~l~e~~pa~r~p----d~~ 163 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLAQAQFA-IQEFAAAQQTLEDLMEYNPAFRSP----DGH 163 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHHHHHHh-hccHHHHHHHHHHHhhcCCccCCC----Cch
Confidence 445544444 88999999999864 4444445677788888777 699999999999999986543332 556
Q ss_pred HHHHHHHHhccCHHHHHHHHHh
Q psy5288 164 IKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 164 ~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.-+|.+|..+|++.+|...|+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~ 185 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEV 185 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHH
Confidence 7789999999999998887763
No 273
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.76 E-value=4 Score=32.26 Aligned_cols=128 Identities=15% Similarity=0.095 Sum_probs=77.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHcCChh---HHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHHH---cC----C-hhHH
Q psy5288 52 LGKKWNDGGNAFLQAGTLHLKNNNKH---DAGLCFVDAANCYK-KS-NPAEAIKAIERAVEIHTD---MG----R-FIMV 118 (186)
Q Consensus 52 ~~g~~~~A~~~y~~a~~~~~~~~~~~---~aa~~~~~a~~~y~-~~-~~~~A~~~~~~Al~i~~~---~~----~-~~~~ 118 (186)
..|+++-|..++.|+-.+.. ..+|. .-+..+.++|.... +. ++++|+.++++|.++... .+ + ....
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 56788888888888877765 22333 33566667776554 45 899999999999999744 21 1 1466
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE-ENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++..++.+|.+. +.++.... -.+++++..+. ++++.. .+..+ .+..+.++.+.+.+.+.+
T Consensus 84 ~~iL~~La~~~l~~-~~~~~~~k-a~~~l~~l~~e~~~~~~~--~~L~l-~il~~~~~~~~~~~~L~~ 146 (278)
T PF08631_consen 84 LSILRLLANAYLEW-DTYESVEK-ALNALRLLESEYGNKPEV--FLLKL-EILLKSFDEEEYEEILMR 146 (278)
T ss_pred HHHHHHHHHHHHcC-CChHHHHH-HHHHHHHHHHhCCCCcHH--HHHHH-HHHhccCChhHHHHHHHH
Confidence 77889999999884 76654333 33344443322 232221 21222 233336666666665543
No 274
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.74 E-value=0.59 Score=35.29 Aligned_cols=61 Identities=25% Similarity=0.329 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy5288 79 AGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDH 142 (186)
Q Consensus 79 aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~ 142 (186)
.+.....+|..|.+.++++++..+-++++++....++. ..++..|+.+|..+ ++++.|.-|
T Consensus 140 t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n--~eil~sLas~~~~~-~~~e~AYiw 200 (203)
T PF11207_consen 140 TAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFN--PEILKSLASIYQKL-KNYEQAYIW 200 (203)
T ss_pred CHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHh-cchhhhhhh
Confidence 35566678899998999999999999999998775544 45899999999995 999998644
No 275
>KOG2796|consensus
Probab=92.74 E-value=2.6 Score=33.47 Aligned_cols=115 Identities=14% Similarity=0.076 Sum_probs=85.7
Q ss_pred CCCCHHHHHHHHHHH---------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CH
Q psy5288 32 GGNKTDEAIDLYVRA---------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NP 95 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a---------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~ 95 (186)
|-+.|.=+.+.|.+. |.+-+..||.+.|-.+|++.-+...+++.-....-...+.+.+|.-. ++
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~ 268 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNF 268 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccch
Confidence 456666666666555 55666788888888888877777777777777777777778888766 88
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 96 AEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 96 ~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
.+|...|.+.+..... -+.+-++.|.|... +|+...|++..+.+++..+..
T Consensus 269 a~a~r~~~~i~~~D~~------~~~a~NnKALcllY-lg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 269 AEAHRFFTEILRMDPR------NAVANNNKALCLLY-LGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHhhccccCCC------chhhhchHHHHHHH-HHHHHHHHHHHHHHhccCCcc
Confidence 9999988776543221 24466778888888 699999999999999987753
No 276
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.70 E-value=1.7 Score=27.72 Aligned_cols=65 Identities=11% Similarity=0.041 Sum_probs=48.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q psy5288 87 ANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEEN 155 (186)
Q Consensus 87 ~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~ 155 (186)
..+|...+.++|+..++++++-... .++.-.++--+..+|.+. |+|.+.+.+-.+=+++.++.++
T Consensus 14 lkLY~~~~~~~Al~~W~~aL~k~~~---~~~rf~~lG~l~qA~~e~-Gkyr~~L~fA~~Q~~~A~eled 78 (80)
T PF10579_consen 14 LKLYHQNETQQALQKWRKALEKITD---REDRFRVLGYLIQAHMEW-GKYREMLAFALQQLEIAEELED 78 (80)
T ss_pred HHHhccchHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHccC
Confidence 4566555778999999998876654 334556677788888986 9999999998888888766544
No 277
>KOG1308|consensus
Probab=92.56 E-value=0.11 Score=42.29 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=81.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q psy5288 50 FKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEI 128 (186)
Q Consensus 50 ~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~ 128 (186)
+...|.+++|++.|.+++.+ ....+..|.+=+.+|.++ .+..|++-|..|++|..+.-. -+---|..
T Consensus 124 Aln~G~~~~ai~~~t~ai~l------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~------~ykfrg~A 191 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIEL------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK------GYKFRGYA 191 (377)
T ss_pred HhcCcchhhhhccccccccc------CCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc------ccchhhHH
Confidence 55678899999999999887 345566777778888887 889999999999988766532 22223444
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHH
Q psy5288 129 YEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIK 181 (186)
Q Consensus 129 y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~ 181 (186)
... ||++++|...+..|..+--......+...+.-+...+-.-.+.++++.+
T Consensus 192 ~rl-lg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 192 ERL-LGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHH-hhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 455 6999999999999988844433334444454555544444455555543
No 278
>KOG1497|consensus
Probab=92.46 E-value=2.8 Score=34.08 Aligned_cols=104 Identities=15% Similarity=0.099 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH--HHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCh
Q psy5288 80 GLCFVDAANCYKKS-NPAEAIKAIERAVEIH--TDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENK 156 (186)
Q Consensus 80 a~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~--~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~ 156 (186)
+.+-..++.+|.+. ++..|...+. +++.. ....+...-...+.++|.+|.+. ++..+|-.+-.++-=+.....++
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~-~d~veae~~inRaSil~a~~~Ne 180 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLED-DDKVEAEAYINRASILQAESSNE 180 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhhhcccCH
Confidence 34444556666554 5555444332 11111 12223445556778999999995 99999999998887776655555
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 157 SSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 157 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
......-.--|.++-..++|-+|...|.+
T Consensus 181 ~Lqie~kvc~ARvlD~krkFlEAAqrYye 209 (399)
T KOG1497|consen 181 QLQIEYKVCYARVLDYKRKFLEAAQRYYE 209 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445557777888899888887755
No 279
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.46 E-value=4.3 Score=31.82 Aligned_cols=142 Identities=14% Similarity=0.100 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChh
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFI 116 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~ 116 (186)
.+.++|.++... ...|++++|++.|++...- ..+.+.. -.+...++..+.+. ++++|+....+=+.++....+
T Consensus 33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~--~p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-- 106 (254)
T COG4105 33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSR--HPFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-- 106 (254)
T ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHc--CCCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC--
Confidence 466777776544 4579999999999887743 2333333 33444566666554 999999998876666655544
Q ss_pred HHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHhccCChHH-----------HHHHHHHHHHHHHhccCHHH
Q psy5288 117 MVAKHHENIAEIYEKEL-------EDQEKAIDHYQHAADCYAGEENKSS-----------ANKCLIKIANYSALTDHLDK 178 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~~l-------g~~~~Ai~~y~kA~~l~~~~~~~~~-----------~~~~~~~la~~y~~~g~~~~ 178 (186)
+.-++.-.|.++...+ .-...|+..+++.+.-|+++.-... .+..-..+|..|.+.|.+.-
T Consensus 107 -~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 107 -ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred -hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 5555666666654321 2245667777777777876421111 11233567889999999999
Q ss_pred HHHHHHhC
Q psy5288 179 AIKLYEQL 186 (186)
Q Consensus 179 A~~~~~~~ 186 (186)
|+..+++|
T Consensus 186 A~nR~~~v 193 (254)
T COG4105 186 AINRFEEV 193 (254)
T ss_pred HHHHHHHH
Confidence 99988764
No 280
>KOG1497|consensus
Probab=92.45 E-value=3.6 Score=33.46 Aligned_cols=108 Identities=14% Similarity=0.227 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLH--LKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG 113 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~--~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~ 113 (186)
+.++-+-.+.+.+|..-+++..|++...-. ... ++..+.+.....+.++++.|.+. +..+|..+..++.-+.....
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc
Confidence 456666777788898888888887765321 111 12224445567788999999988 68899888888877766666
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5288 114 RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146 (186)
Q Consensus 114 ~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA 146 (186)
+....-.+-.--|++.-.. +++=+|...|.+.
T Consensus 179 Ne~Lqie~kvc~ARvlD~k-rkFlEAAqrYyel 210 (399)
T KOG1497|consen 179 NEQLQIEYKVCYARVLDYK-RKFLEAAQRYYEL 210 (399)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 7666666666667776664 6776666666543
No 281
>KOG4521|consensus
Probab=92.34 E-value=6.8 Score=37.12 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=79.7
Q ss_pred ccccCCCCHHHHHHHHHHH---------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--
Q psy5288 28 SQFTGGNKTDEAIDLYVRA---------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCY-- 90 (186)
Q Consensus 28 ~~~~~~~~~~~A~~~y~~a---------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y-- 90 (186)
-++|+...|.-..++.+-. |..|...|...+|++||.+|++- .+...++.++..-.
T Consensus 893 e~lfg~cqy~~lqdy~~llh~wc~vlk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg-------~ge~~aL~~lv~~~~p 965 (1480)
T KOG4521|consen 893 ERLFGQCQYKVLQDYLNLLHSWCRVLKPVIRFMLGIAYLGTGEPVKALNCFQSALSG-------FGEGNALRKLVYFLLP 965 (1480)
T ss_pred hhhhcchhHHHHHHHHHHhhhhhhhhHHHHHHhhheeeecCCchHHHHHHHHHHhhc-------cccHHHHHHHHHHhcC
Confidence 5567777777776665443 45577889999999999998874 22233444443321
Q ss_pred -----hcC----CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC--HHHH------------HHHHHHHH
Q psy5288 91 -----KKS----NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELED--QEKA------------IDHYQHAA 147 (186)
Q Consensus 91 -----~~~----~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~--~~~A------------i~~y~kA~ 147 (186)
... ....|+++|.++++++...|-.+.+-+.-...- +. +++ ...| ..++.+|+
T Consensus 966 ~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~AI---e~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy 1041 (1480)
T KOG4521|consen 966 KRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKAI---EN-LPDDNPSVALISTTVFNHHLDLGHWFQAY 1041 (1480)
T ss_pred CCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH---Hh-CCCcchhHHHHHHHHHHhhhchhhHHHHH
Confidence 111 235678888888888877776555433221111 11 111 1111 12234455
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHhccCHH
Q psy5288 148 DCYAGEENKSSANKCLIKIANYSALTDHLD 177 (186)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~la~~y~~~g~~~ 177 (186)
...-++.+......|+..+-.++..-|+.+
T Consensus 1042 ~ai~~npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1042 KAILRNPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHhccchH
Confidence 554444444455578888888877776654
No 282
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.01 E-value=0.53 Score=36.25 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 115 FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 115 ~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+..|..+.+=|.+|-+ +|-..-|.--|.+++.|.++. +.+++-+|.-+...|+|+-|.+.|+.
T Consensus 61 ~eeRA~l~fERGvlYDS-lGL~~LAR~DftQaLai~P~m------~~vfNyLG~Yl~~a~~fdaa~eaFds 124 (297)
T COG4785 61 DEERAQLLFERGVLYDS-LGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDS 124 (297)
T ss_pred hHHHHHHHHHhcchhhh-hhHHHHHhhhhhhhhhcCCCc------HHHHHHHHHHHHhcccchHHHHHhhh
Confidence 34556666677777777 577777777777777776653 35667777777777777777777754
No 283
>PRK11906 transcriptional regulator; Provisional
Probab=91.91 E-value=5.3 Score=34.00 Aligned_cols=89 Identities=16% Similarity=0.031 Sum_probs=59.2
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHH
Q psy5288 83 FVDAANCYK-KSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANK 161 (186)
Q Consensus 83 ~~~a~~~y~-~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~ 161 (186)
+.-+|.+.- ..+++.|...+++|..+.... |..+.-.|.+.--. |+.++|+++.++|+++.+.. ....
T Consensus 341 ~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~------A~~~~~~~~~~~~~-G~~~~a~~~i~~alrLsP~~----~~~~ 409 (458)
T PRK11906 341 LAIMGLITGLSGQAKVSHILFEQAKIHSTDI------ASLYYYRALVHFHN-EKIEEARICIDKSLQLEPRR----RKAV 409 (458)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHhhcCCcc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCchh----hHHH
Confidence 335555443 337899999999998876554 45677778877764 99999999999999986532 1223
Q ss_pred HHHHHHHHHHhccCHHHHHHHH
Q psy5288 162 CLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 162 ~~~~la~~y~~~g~~~~A~~~~ 183 (186)
+...+-..|.- ...++|+..|
T Consensus 410 ~~~~~~~~~~~-~~~~~~~~~~ 430 (458)
T PRK11906 410 VIKECVDMYVP-NPLKNNIKLY 430 (458)
T ss_pred HHHHHHHHHcC-CchhhhHHHH
Confidence 33333334443 3466676665
No 284
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=91.90 E-value=2 Score=27.15 Aligned_cols=33 Identities=9% Similarity=-0.061 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
+..|-.-+.-+...|++.+|+.||.++++++.+
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 334444556677888888888888888887665
No 285
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.89 E-value=10 Score=34.87 Aligned_cols=129 Identities=9% Similarity=-0.006 Sum_probs=87.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHH-----cCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy5288 52 LGKKWNDGGNAFLQAGTLHLK-----NNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIA 126 (186)
Q Consensus 52 ~~g~~~~A~~~y~~a~~~~~~-----~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg 126 (186)
...++.+|-.+..++..-.+. .++.......+.....+ ...+++.|....+.++......-. ..-..++..+|
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val-~~~~~e~a~~lar~al~~L~~~~~-~~r~~~~sv~~ 504 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVAL-NRGDPEEAEDLARLALVQLPEAAY-RSRIVALSVLG 504 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcccccc-hhhhhhhhhhh
Confidence 455677777776666655443 22222223333221111 223789999999999887766543 33455778889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcc--CHHHHHHHH
Q psy5288 127 EIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTD--HLDKAIKLY 183 (186)
Q Consensus 127 ~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g--~~~~A~~~~ 183 (186)
.+..-+ |++++|..+-.++..+.+.-+.+.....+....+.++...| .+.+....|
T Consensus 505 ~a~~~~-G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~ 562 (894)
T COG2909 505 EAAHIR-GELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAF 562 (894)
T ss_pred HHHHHh-chHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 998885 99999999999999998887777777777788899999999 344444444
No 286
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.57 E-value=11 Score=34.65 Aligned_cols=166 Identities=15% Similarity=0.082 Sum_probs=92.5
Q ss_pred hHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy5288 4 NEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCF 83 (186)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~ 83 (186)
+++++.++...|...+. .. .|-.-+-++...|.+..-.|++++|.-+-..+.++.++.+.+..+.-..
T Consensus 473 ~~e~a~~lar~al~~L~---~~---------~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~ 540 (894)
T COG2909 473 DPEEAEDLARLALVQLP---EA---------AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSL 540 (894)
T ss_pred CHHHHHHHHHHHHHhcc---cc---------cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 34556666666666555 11 2223355677778889999999999999999999988888777666555
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC-ChHH
Q psy5288 84 VDAANCYKKS---NPAEAIKAIERAVEIHT-DMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE-NKSS 158 (186)
Q Consensus 84 ~~a~~~y~~~---~~~~A~~~~~~Al~i~~-~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~-~~~~ 158 (186)
..-+.+.... .+.+....+...-.... +.....-. ....+...+.. + +++.+-.-.-+.+++-.... .+..
T Consensus 541 ~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~--~~~r~~ll~~~-~-r~~~~~~ear~~~~~~~~~~~~~~~ 616 (894)
T COG2909 541 LQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL--VRIRAQLLRAW-L-RLDLAEAEARLGIEVGSVYTPQPLL 616 (894)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHHH-H-HHhhhhHHhhhcchhhhhcccchhH
Confidence 4445554433 23333333332222211 11111111 22222222222 1 25555555555555433222 2222
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 159 ANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 159 ~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..-.+..++.++...|++++|.....+
T Consensus 617 ~~~~~~~LA~l~~~~Gdl~~A~~~l~~ 643 (894)
T COG2909 617 SRLALSMLAELEFLRGDLDKALAQLDE 643 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 112224999999999999999887654
No 287
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.50 E-value=6.3 Score=31.75 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=51.1
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHH
Q psy5288 83 FVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANK 161 (186)
Q Consensus 83 ~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~ 161 (186)
..+++++|... ++..-.+...++-+...+...+. .+.+...+-..+...-.+++.-|...+..+++..+.......-.
T Consensus 48 vlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k-~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~ 126 (421)
T COG5159 48 VLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPK-ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLE 126 (421)
T ss_pred HHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchh-HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777554 44433333333333333333222 22222222222222125677778888888877665433222222
Q ss_pred HHHHHHHHHHhccCHHHHHHHH
Q psy5288 162 CLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 162 ~~~~la~~y~~~g~~~~A~~~~ 183 (186)
.-.++..++.+.|.|.+|+...
T Consensus 127 Le~Kli~l~y~~~~YsdalalI 148 (421)
T COG5159 127 LECKLIYLLYKTGKYSDALALI 148 (421)
T ss_pred HHHHHHHHHHhcccHHHHHHHH
Confidence 3356677777888888887654
No 288
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=91.45 E-value=0.81 Score=28.08 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 120 KHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
..+.+.|.-..+. |++++|+.+|.+|++++..
T Consensus 6 ~~~~~~Av~~D~~-g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 6 IELIKKAVEADEA-GNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHT-TSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
Confidence 3445556666665 9999999999999998764
No 289
>KOG4814|consensus
Probab=90.97 E-value=7.8 Score=34.54 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy5288 43 YVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKH 121 (186)
Q Consensus 43 y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~ 121 (186)
++.|...| +..+|..+++.|..++.-+.+-.....-+.....+.-||..+ +.|.|+++++.|-+.-+..- -+
T Consensus 358 Wn~A~~~F-~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~------l~ 430 (872)
T KOG4814|consen 358 WNTAKKLF-KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP------LC 430 (872)
T ss_pred HHhhHHHH-HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH------HH
Confidence 33344444 466799999999999987655333333378888899999998 89999999999976653331 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
...+-.+.... |+-++|+.+.......+.+
T Consensus 431 q~~~~~~~~~E-~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 431 QLLMLQSFLAE-DKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHHHHHHHh-cchHHHHHHHHHHHhhhcc
Confidence 22222233333 6788888887776666543
No 290
>KOG2114|consensus
Probab=90.92 E-value=6.2 Score=36.00 Aligned_cols=36 Identities=6% Similarity=0.206 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLH 70 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~ 70 (186)
+-+.-.++..+.|.-....|++++|.+.|.+++...
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 445566667777777778888888888887776653
No 291
>KOG1464|consensus
Probab=90.77 E-value=2.8 Score=33.45 Aligned_cols=144 Identities=11% Similarity=0.057 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~ 112 (186)
++++---.+|+.-|.. ..++++|+..|.+.+++--.-|.+. -.++....+++..+ ++++-++.|.+.+...+..
T Consensus 24 pdVDlENQYYnsK~l~---e~~p~~Al~sF~kVlelEgEKgeWG--FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 24 PDVDLENQYYNSKGLK---EDEPKEALSSFQKVLELEGEKGEWG--FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred CCcchHhhhhcccccc---ccCHHHHHHHHHHHHhcccccchhH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 3444444444443322 3467777777777777642222222 23455566666655 7888888888877765432
Q ss_pred --CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 113 --GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 113 --~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+++.- +.+.+-..-... .+.+--.++|+.-++..+...+...--.+..+||.+|...|+|.+--+.+.+
T Consensus 99 VTrNySEK--sIN~IlDyiStS-~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkq 170 (440)
T KOG1464|consen 99 VTRNYSEK--SINSILDYISTS-KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQ 170 (440)
T ss_pred HhccccHH--HHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHH
Confidence 222211 222222222222 4566666777777777665433222124667888888888888776666543
No 292
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=90.76 E-value=2.3 Score=26.83 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=24.3
Q ss_pred cCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Q psy5288 133 LEDQEKAIDHYQHAADCYAGEENKSSANKCLIKI 166 (186)
Q Consensus 133 lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~l 166 (186)
-|+|++|+.+|.+|++++-...++........++
T Consensus 19 ~gny~eA~~lY~~ale~~~~ekn~~~k~~i~~K~ 52 (75)
T cd02680 19 KGNAEEAIELYTEAVELCINTSNETMDQALQTKL 52 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence 4999999999999999987654443333333343
No 293
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.72 E-value=0.33 Score=27.31 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.4
Q ss_pred HHHHHHHHhccCHHHHHHHHHhC
Q psy5288 164 IKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 164 ~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
.++|..|+..|+++.|.+.+++|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~ev 25 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEV 25 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHH
Confidence 57899999999999999998764
No 294
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.69 E-value=10 Score=32.72 Aligned_cols=119 Identities=17% Similarity=0.145 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHH-cCChh---------H---------HHHHHHHHHHHHhcC
Q psy5288 38 EAIDLYVRAGNLFKLGK-----KWNDGGNAFLQAGTLHLK-NNNKH---------D---------AGLCFVDAANCYKKS 93 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g-----~~~~A~~~y~~a~~~~~~-~~~~~---------~---------aa~~~~~a~~~y~~~ 93 (186)
+|++.....+..|-.+. -..+|.++|.++.+.-+. +|... + -..+-.+++.|..++
T Consensus 193 eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarkl 272 (539)
T PF04184_consen 193 EALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKL 272 (539)
T ss_pred HHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHh
Confidence 44444444444443322 367778888877776553 11100 0 011122456666665
Q ss_pred -CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHH
Q psy5288 94 -NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIK 165 (186)
Q Consensus 94 -~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~ 165 (186)
+.++|++.++.-++.+...+ .-.+..+|-.++.. ++.|.++...+.+ |.+...+..+.-||..
T Consensus 273 Gr~~EAIk~~rdLlke~p~~~----~l~IrenLie~LLe-lq~Yad~q~lL~k----YdDi~lpkSAti~YTa 336 (539)
T PF04184_consen 273 GRLREAIKMFRDLLKEFPNLD----NLNIRENLIEALLE-LQAYADVQALLAK----YDDISLPKSATICYTA 336 (539)
T ss_pred CChHHHHHHHHHHHhhCCccc----hhhHHHHHHHHHHh-cCCHHHHHHHHHH----hccccCCchHHHHHHH
Confidence 88999999987665554222 24478888888888 4888888777666 3444344445555544
No 295
>KOG1915|consensus
Probab=90.55 E-value=6.2 Score=33.97 Aligned_cols=85 Identities=15% Similarity=0.079 Sum_probs=46.4
Q ss_pred hcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Q psy5288 52 LGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYE 130 (186)
Q Consensus 52 ~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~ 130 (186)
.++++..|...|++|++. + ..-...+.+-+.+=++. ....|...+.+|+.+.+..+. .+.+--.+-+
T Consensus 85 sq~e~~RARSv~ERALdv-----d-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq------lWyKY~ymEE 152 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDV-----D-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ------LWYKYIYMEE 152 (677)
T ss_pred hHHHHHHHHHHHHHHHhc-----c-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH------HHHHHHHHHH
Confidence 344556666666666664 2 22344555666665555 567888888888887654433 2333333333
Q ss_pred HhcCCHHHHHHHHHHHHHH
Q psy5288 131 KELEDQEKAIDHYQHAADC 149 (186)
Q Consensus 131 ~~lg~~~~Ai~~y~kA~~l 149 (186)
. ||+..-|.+.|++=+++
T Consensus 153 ~-LgNi~gaRqiferW~~w 170 (677)
T KOG1915|consen 153 M-LGNIAGARQIFERWMEW 170 (677)
T ss_pred H-hcccHHHHHHHHHHHcC
Confidence 3 45555555555444443
No 296
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.53 E-value=0.63 Score=36.33 Aligned_cols=62 Identities=11% Similarity=0.070 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh
Q psy5288 98 AIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSAL 172 (186)
Q Consensus 98 A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~ 172 (186)
|.++|.+|..+.+..|+ .++.+|.++... |+.=.|+-+|-+++-. .... .....||..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~------p~nQLAvl~~~~-~~~l~avy~y~Rsl~~--~~Pf----~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN------PYNQLAVLASYQ-GDDLDAVYYYIRSLAV--RIPF----PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSH------HHHHHHHHHHHT-T-HHHHHHHHHHHHSS--SB------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCC------cccchhhhhccc-cchHHHHHHHHHHHhc--CCCc----HHHHHHHHHHHHH
Confidence 68999999999999998 688899999996 9999999999999953 2211 2345666666665
No 297
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.46 E-value=0.52 Score=36.29 Aligned_cols=95 Identities=9% Similarity=0.051 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q psy5288 76 KHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE 154 (186)
Q Consensus 76 ~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~ 154 (186)
++.-+..+.+=|..|..+ -..-|..-|.+++.|.+++ +.+++-+|..+... |+++-|.+.|...+++.+..+
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m------~~vfNyLG~Yl~~a-~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQA-GNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc------HHHHHHHHHHHHhc-ccchHHHHHhhhHhccCCcch
Confidence 344455666777777776 4456666677777766554 55788888888875 899999999888888865432
Q ss_pred ChHHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 155 NKSSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 155 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
-...|-|..+.--|+|+-|.+-|
T Consensus 134 ------Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 134 ------YAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred ------HHHhccceeeeecCchHhhHHHH
Confidence 34455565555666666665544
No 298
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=90.42 E-value=2.1 Score=29.80 Aligned_cols=62 Identities=23% Similarity=0.222 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC--ChH-------HHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGEE--NKS-------SANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~--~~~-------~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
+..+|....+. +++-.+|-+|++|+.+.++.. +.. .......|||..++..|+-+=.++|++
T Consensus 4 htllAd~a~~~-~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLq 74 (140)
T PF10952_consen 4 HTLLADQAFKE-ADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQ 74 (140)
T ss_pred HHHHHHHHhhc-ccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHH
Confidence 45567777775 999999999999999987642 111 111245799999999999999888875
No 299
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=90.37 E-value=9.9 Score=32.01 Aligned_cols=144 Identities=13% Similarity=0.025 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC--C------HHHHHHHHHHHHHHHHHc
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS--N------PAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~--~------~~~A~~~~~~Al~i~~~~ 112 (186)
-...++|+.....|+|+-|...|..+.+=+..-+.+...+.++.-++.+.... . .++...+++.|+..|...
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 34566788888899999999999877776644333444444554444443322 1 123344444555544441
Q ss_pred -----CChhHHHHHHHHHHHHHHHhcCCHHHHHH---------------------HHHHHHHHH--hccCCh-------H
Q psy5288 113 -----GRFIMVAKHHENIAEIYEKELEDQEKAID---------------------HYQHAADCY--AGEENK-------S 157 (186)
Q Consensus 113 -----~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~---------------------~y~kA~~l~--~~~~~~-------~ 157 (186)
....-+..+..-.+.++... +.+.+|.. .++++...+ ...+.+ +
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~-~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~R 367 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSR-GGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFR 367 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhH
Confidence 12223334444444444442 44444333 344444444 221111 1
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 158 SANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 158 ~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
-.+--++--|.-|.+.|+...|+.+|.+
T Consensus 368 K~af~~vLAg~~~~~~~~~~~a~rcy~~ 395 (414)
T PF12739_consen 368 KYAFHMVLAGHRYSKAGQKKHALRCYKQ 395 (414)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1112334445666777777777777764
No 300
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.29 E-value=11 Score=32.24 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHH------HHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERAVEI------HTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHY 143 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~Al~i------~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y 143 (186)
..|..+|+..... +++-|.+||+++-+. +.-.|+. .-+.+|+.+-..+ |++.-|..++
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~----~~L~kl~~~a~~~-~~~n~af~~~ 412 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDR----EKLSKLAKIAEER-GDINIAFQAA 412 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-H----HHHHHHHHHHHHT-T-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCH----HHHHHHHHHHHHc-cCHHHHHHHH
Confidence 4777888887765 888888888776543 2333442 2344555555554 5555555443
No 301
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=90.28 E-value=3.2 Score=26.19 Aligned_cols=36 Identities=14% Similarity=-0.033 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 36 TDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 36 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
.++|+.+..+| .--...|++++|+++|..+++.+..
T Consensus 3 l~kai~Lv~~A-~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 3 LERAHFLVTQA-FDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHH-HHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 34555555555 3344566777777777777776654
No 302
>PF12854 PPR_1: PPR repeat
Probab=90.25 E-value=0.72 Score=24.11 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 161 KCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 161 ~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
.+|.-|-..|.+.|+.++|.++|++.
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 57888899999999999999999864
No 303
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.02 E-value=1.3 Score=27.89 Aligned_cols=33 Identities=30% Similarity=0.322 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
|..+...|.-+... |++++||.+|++|++++.+
T Consensus 6 A~~~a~~AVe~D~~-gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 6 ARKYAINAVKAEKE-GNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence 34444555556665 8999999999998888765
No 304
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=89.80 E-value=3.6 Score=26.03 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
-+..-|.-.... |+|++|+.+|.+|++.+..
T Consensus 8 ~l~~~Ave~D~~-g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 8 EVLKRAVELDQE-GRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHH
Confidence 344445555554 9999999999999998765
No 305
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=89.80 E-value=1.8 Score=26.50 Aligned_cols=26 Identities=4% Similarity=-0.004 Sum_probs=18.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
|.-+...|++++|+++|.++++.+..
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 44566788888888888888877653
No 306
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=89.64 E-value=1.6 Score=27.66 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
..|+++..+| .-....|++++|+.+|.++++.+..
T Consensus 4 ~~a~~l~~~A-ve~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 4 LAAKEVLKRA-VELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4455555444 5566777888888888888777654
No 307
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.63 E-value=9.4 Score=30.63 Aligned_cols=86 Identities=10% Similarity=0.071 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh
Q psy5288 97 EAIKAIERAVEIHTDM----GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSAL 172 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~----~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~ 172 (186)
..+..++..+.+-... ..+...+.++...+.+.... |+++.|...+.++..+....+.. ...+...-+.++..
T Consensus 120 ~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~-g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~ 196 (352)
T PF02259_consen 120 DDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKA-GNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWA 196 (352)
T ss_pred cchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHC-CCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHH
Confidence 3445555555544333 33778888999999999996 99999999999999876433211 23566777889999
Q ss_pred ccCHHHHHHHHHh
Q psy5288 173 TDHLDKAIKLYEQ 185 (186)
Q Consensus 173 ~g~~~~A~~~~~~ 185 (186)
.|+..+|+..++.
T Consensus 197 ~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 197 QGEQEEAIQKLRE 209 (352)
T ss_pred cCCHHHHHHHHHH
Confidence 9999999988754
No 308
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.17 E-value=1.6 Score=40.51 Aligned_cols=100 Identities=9% Similarity=0.022 Sum_probs=67.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy5288 49 LFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAE 127 (186)
Q Consensus 49 ~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~ 127 (186)
.|..-+.|++|+..|.+....+-. . .+--.+..++|-..... .-..--+-+.+|+.-+..+-+..++.--|...|.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPG--R-KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKAL 560 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCC--c-ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHH
Confidence 344445566666666666665421 1 12234455666665443 1111116677788888778777888888888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 128 IYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 128 ~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
+|+. +|+|++-|.+|.-|+.-|+.
T Consensus 561 ~~~~-~~~~~~~~~~~~~~~~~~~~ 584 (932)
T PRK13184 561 VYQR-LGEYNEEIKSLLLALKRYSQ 584 (932)
T ss_pred HHHH-hhhHHHHHHHHHHHHHhcCC
Confidence 9999 59999999999999998876
No 309
>KOG2471|consensus
Probab=88.99 E-value=1.8 Score=37.22 Aligned_cols=78 Identities=18% Similarity=0.145 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-HHHHcCC---h--------hHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q psy5288 45 RAGNLFKLGKKWNDGGNAFLQAGT-LHLKNNN---K--------HDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTD 111 (186)
Q Consensus 45 ~ag~~~~~~g~~~~A~~~y~~a~~-~~~~~~~---~--------~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~ 111 (186)
+.|-++..+|.|.-++.+|.+|+. ...++.+ + ...-..+.+.|..|... +|-.|.+||.+++.++..
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 345567788899999999999995 4443221 1 11224555888888877 999999999999999987
Q ss_pred cCChhHHHHHHHHHHHH
Q psy5288 112 MGRFIMVAKHHENIAEI 128 (186)
Q Consensus 112 ~~~~~~~a~~~~~lg~~ 128 (186)
+-. .|.+++.+
T Consensus 368 nPr------lWLRlAEc 378 (696)
T KOG2471|consen 368 NPR------LWLRLAEC 378 (696)
T ss_pred CcH------HHHHHHHH
Confidence 754 45555555
No 310
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=88.50 E-value=4.5 Score=25.54 Aligned_cols=30 Identities=10% Similarity=0.134 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 43 YVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 43 y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
|.+-+.-....|+|++|+.+|..+++.+..
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 344445567788888888888888887654
No 311
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=88.28 E-value=0.65 Score=22.96 Aligned_cols=25 Identities=4% Similarity=0.259 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 162 CLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 162 ~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
+|..+-..|.+.|++++|.+.|+++
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHH
Confidence 4677788999999999999999863
No 312
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.12 E-value=12 Score=30.14 Aligned_cols=131 Identities=8% Similarity=-0.005 Sum_probs=68.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS--NPAEAIKAIERAVEIHTDMGRFIMVAKHHEN 124 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~--~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~ 124 (186)
+.+|-..|++..-.+.-..+-+.....-.+.. +.....+.+.+... .++.-+..+...++-....+..-..-..-.+
T Consensus 52 ~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~-~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~K 130 (421)
T COG5159 52 FKLYVSKGDYCSLGDTITSSREAMEDFTKPKI-TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECK 130 (421)
T ss_pred HHHHHhcCCcchHHHHHHhhHHHHHHhcchhH-HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666665555555444444433222211 11222222222222 4566677777766666555443333334455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHH
Q psy5288 125 IAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKA 179 (186)
Q Consensus 125 lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A 179 (186)
+..++.+. |+|.+|+....-.+.-+.+-++......++.-=..+|....+..++
T Consensus 131 li~l~y~~-~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~Ks 184 (421)
T COG5159 131 LIYLLYKT-GKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKS 184 (421)
T ss_pred HHHHHHhc-ccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhh
Confidence 66677774 9999999988777666665444433334444444555555554444
No 313
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=87.47 E-value=2.7 Score=26.40 Aligned_cols=36 Identities=17% Similarity=0.031 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 36 TDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 36 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
.++|+++..+| .-....|++++|+.+|..+++.+..
T Consensus 3 l~~Ai~lv~~A-v~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 3 LEKAIALVVQA-VKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHH
Confidence 35566666555 4456677777777777777776543
No 314
>KOG1839|consensus
Probab=87.07 E-value=5.2 Score=38.06 Aligned_cols=141 Identities=13% Similarity=0.047 Sum_probs=103.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cC-ChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc--CChhH
Q psy5288 43 YVRAGNLFKLGKKWNDGGNAFLQAGTLHLK-NN-NKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM--GRFIM 117 (186)
Q Consensus 43 y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~-~~-~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~--~~~~~ 117 (186)
+.+.|......|.+.++.+ .-+++.++.. .| .....+.+|..++.++-.. +.++|+.+-++|.-|.... -+...
T Consensus 935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 4444555556777777777 6666666542 22 2334567787888887766 8999999999999887544 36777
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc--cCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG--EENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~--~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
....+.+++...... ++...|...+.+|..+.-- ...++....+..+++.++...++++.|+.+.+.
T Consensus 1014 t~~~y~nlal~~f~~-~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAV-KNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLES 1082 (1236)
T ss_pred HHHHhhHHHHHHHhc-cCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence 788888899777774 8899999999999887442 123334446778999999999999999998764
No 315
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=86.85 E-value=3.1 Score=26.04 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
+.|+.+..+| .-....|++++|+.+|.++++.+..
T Consensus 4 ~~A~~l~~~A-v~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 4 QKAIELVKKA-IEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4555555555 5567788888888888888887654
No 316
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=86.70 E-value=2.2 Score=27.18 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
.|..+.+.|..+... |+.++|+.+|++++....+
T Consensus 7 ~A~~~I~kaL~~dE~-g~~e~Al~~Y~~gi~~l~e 40 (79)
T cd02679 7 QAFEEISKALRADEW-GDKEQALAHYRKGLRELEE 40 (79)
T ss_pred HHHHHHHHHhhhhhc-CCHHHHHHHHHHHHHHHHH
Confidence 445566677777775 9999999999999998775
No 317
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.65 E-value=2.3 Score=24.85 Aligned_cols=32 Identities=19% Similarity=-0.050 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
++.-+|..+.. +|+|++|..+.+.++++-|.+
T Consensus 3 ~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 3 CLYYLAIGHYK-LGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-
T ss_pred hHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCc
Confidence 56678888888 699999999999999997654
No 318
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=86.51 E-value=1 Score=22.65 Aligned_cols=24 Identities=8% Similarity=0.261 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 162 CLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 162 ~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+|..+-..|.+.|++++|.++|.+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~ 25 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKE 25 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHH
Confidence 456677789999999999999976
No 319
>KOG4014|consensus
Probab=86.48 E-value=4.2 Score=30.58 Aligned_cols=90 Identities=17% Similarity=0.108 Sum_probs=62.1
Q ss_pred hcCCHHHHH-HHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy5288 52 LGKKWNDGG-NAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS------NPAEAIKAIERAVEIHTDMGRFIMVAKHHEN 124 (186)
Q Consensus 52 ~~g~~~~A~-~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~------~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~ 124 (186)
.+|+|-+++ ..|++|..++++.-+..+-.....+.|..+... ++..|+++++.+.+ .+. ...+..
T Consensus 39 lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~----~n~----~~aC~~ 110 (248)
T KOG4014|consen 39 LLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD----ANI----PQACRY 110 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc----cCC----HHHHhh
Confidence 455555555 467888888888766666555555777766543 78999999998876 333 346777
Q ss_pred HHHHHHHh----cC--CHHHHHHHHHHHHHH
Q psy5288 125 IAEIYEKE----LE--DQEKAIDHYQHAADC 149 (186)
Q Consensus 125 lg~~y~~~----lg--~~~~Ai~~y~kA~~l 149 (186)
+|.++.+- -+ +.++|..++.+|-++
T Consensus 111 ~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 111 LGLLHWNGEKDRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred hhhhhccCcCCccCCCCcHHHHHHHHHhccC
Confidence 88887641 02 367888888888876
No 320
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.10 E-value=3.8 Score=32.67 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
..++..++..+... |+++.+++.+++-+.+.+-+. ..|..+-..|...|+...|+..|+++
T Consensus 153 ~~~l~~lae~~~~~-~~~~~~~~~l~~Li~~dp~~E------~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 153 IKALTKLAEALIAC-GRADAVIEHLERLIELDPYDE------PAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHhc-ccHHHHHHHHHHHHhcCccch------HHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 34778889999986 999999999999999866543 57778889999999999999999763
No 321
>KOG0545|consensus
Probab=86.04 E-value=15 Score=28.99 Aligned_cols=100 Identities=17% Similarity=0.119 Sum_probs=70.0
Q ss_pred HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHc------CCh------hHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5288 79 AGLCFVDAAN-CYKKSNPAEAIKAIERAVEIHTDM------GRF------IMVAKHHENIAEIYEKELEDQEKAIDHYQH 145 (186)
Q Consensus 79 aa~~~~~a~~-~y~~~~~~~A~~~~~~Al~i~~~~------~~~------~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~k 145 (186)
+...+..-|. +|...++.+|..+|+.|+-+...+ |++ ......+.|.+.|+... |+|-+++++...
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~-~e~yevleh~se 255 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKK-EEYYEVLEHCSE 255 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhH-HHHHHHHHHHHH
Confidence 4444555454 344448899999999998877544 222 12334678889998884 999999999998
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 146 AADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 146 A~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+...+.+ ...|..-|.....--+-.+|..-|.+
T Consensus 256 iL~~~~~n------vKA~frRakAhaa~Wn~~eA~~D~~~ 289 (329)
T KOG0545|consen 256 ILRHHPGN------VKAYFRRAKAHAAVWNEAEAKADLQK 289 (329)
T ss_pred HHhcCCch------HHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 88877654 36777777777777777777665543
No 322
>KOG0686|consensus
Probab=85.96 E-value=20 Score=30.25 Aligned_cols=112 Identities=16% Similarity=0.123 Sum_probs=71.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5288 67 GTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH 145 (186)
Q Consensus 67 ~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~k 145 (186)
++-++...-.+..-..+..+|.-|... +.+.|+++|-++-+..+..+. ....+.++=.+-.. +|+|.....+-.+
T Consensus 137 Lk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh---vInm~ln~i~VSI~-~~nw~hv~sy~~~ 212 (466)
T KOG0686|consen 137 LKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH---VINMCLNLILVSIY-MGNWGHVLSYISK 212 (466)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH---HHHHHHHHHHHHHh-hcchhhhhhHHHH
Confidence 333444334445566777888888876 999999999998777765543 45556666666565 4888877777777
Q ss_pred HHHHH---hccC-ChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 146 AADCY---AGEE-NKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 146 A~~l~---~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
|...- .+.. .-.....|+-.++++ .+++|..|.++|-
T Consensus 213 A~st~~~~~~~~q~v~~kl~C~agLa~L--~lkkyk~aa~~fL 253 (466)
T KOG0686|consen 213 AESTPDANENLAQEVPAKLKCAAGLANL--LLKKYKSAAKYFL 253 (466)
T ss_pred HHhCchhhhhHHHhcCcchHHHHHHHHH--HHHHHHHHHHHHH
Confidence 76642 1100 001123466555554 4559999999884
No 323
>KOG3824|consensus
Probab=85.95 E-value=1.2 Score=36.12 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 78 DAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 78 ~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
++..++..++.+++..+.++|...|+.|+.+....- +++.+.|...+.. .+.-+|=.+|-+|+.+.+.
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p------~~L~e~G~f~E~~-~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNP------QILIEMGQFREMH-NEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCH------HHHHHHhHHHHhh-hhhHhhhhhhheeeeeCCC
Confidence 344555556666666666677777777766654442 2566667666664 6666666777777666543
No 324
>KOG3081|consensus
Probab=85.92 E-value=16 Score=29.09 Aligned_cols=123 Identities=15% Similarity=0.068 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHH
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVA 119 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a 119 (186)
.....++.+|..-|++++|.....+...+ +..+ --..|+.+. +.+-|....++..++..+. -.-+.|
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------E~~A----l~VqI~lk~~r~d~A~~~lk~mq~ided~-tLtQLA 176 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENL-------EAAA----LNVQILLKMHRFDLAEKELKKMQQIDEDA-TLTQLA 176 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchH-------HHHH----HHHHHHHHHHHHHHHHHHHHHHHccchHH-HHHHHH
Confidence 44556678899999999998776553222 1111 112344444 5666766666665554333 112234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 120 KHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..|++++.- .+++.+|.-.|++--+-+... ...+...+.+...+|+|++|...++.
T Consensus 177 ~awv~la~g----gek~qdAfyifeE~s~k~~~T------~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 177 QAWVKLATG----GEKIQDAFYIFEELSEKTPPT------PLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHhcc----chhhhhHHHHHHHHhcccCCC------hHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 444444332 366899999999887754432 25778888999999999999887754
No 325
>KOG1915|consensus
Probab=85.57 E-value=12 Score=32.41 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=70.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHH------------------cCChhHHHHHHHHH-HHH-----HhcC-CHHHHHHHHHHHH
Q psy5288 52 LGKKWNDGGNAFLQAGTLHLK------------------NNNKHDAGLCFVDA-ANC-----YKKS-NPAEAIKAIERAV 106 (186)
Q Consensus 52 ~~g~~~~A~~~y~~a~~~~~~------------------~~~~~~aa~~~~~a-~~~-----y~~~-~~~~A~~~~~~Al 106 (186)
...+.+.+.+.|+.++++-.. ..+...+-..+.++ |.| |..- +.+-.+.-+.++-
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 356788888999888886321 12233333333332 211 1111 3344444455554
Q ss_pred HHHHHc-CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 107 EIHTDM-GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 107 ~i~~~~-~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+|..- ...+..-..+.+.|.+-.. ||+.|.|...|+-|+.- +..+.|.. .|..--..=+..|.+++|..+|++
T Consensus 458 kLYEkfle~~Pe~c~~W~kyaElE~~-LgdtdRaRaifelAi~q-p~ldmpel---lwkaYIdFEi~~~E~ekaR~LYer 532 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSKYAELETS-LGDTDRARAIFELAISQ-PALDMPEL---LWKAYIDFEIEEGEFEKARALYER 532 (677)
T ss_pred HHHHHHHhcChHhhHHHHHHHHHHHH-hhhHHHHHHHHHHHhcC-cccccHHH---HHHHhhhhhhhcchHHHHHHHHHH
Confidence 554322 3334445567777777666 68888888888777663 22333322 222222344567888888887776
Q ss_pred C
Q psy5288 186 L 186 (186)
Q Consensus 186 ~ 186 (186)
+
T Consensus 533 l 533 (677)
T KOG1915|consen 533 L 533 (677)
T ss_pred H
Confidence 3
No 326
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.39 E-value=6.4 Score=33.55 Aligned_cols=40 Identities=8% Similarity=0.092 Sum_probs=32.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 143 YQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 143 y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
++.|+++....++ ...|..||......|+++-|.++|++.
T Consensus 334 L~~A~~~a~~~~~----~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 334 LDIALEIAKELDD----PEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHCCCCST----HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCc----HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 5666777666554 369999999999999999999999864
No 327
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.38 E-value=1.4 Score=25.77 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 161 KCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 161 ~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.|+..+|..+.++|+|++|..+.+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~ 26 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDA 26 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5778889999999999999998765
No 328
>KOG1920|consensus
Probab=85.05 E-value=21 Score=34.07 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=11.1
Q ss_pred cCCHHHHHHHHHHHHHH
Q psy5288 133 LEDQEKAIDHYQHAADC 149 (186)
Q Consensus 133 lg~~~~Ai~~y~kA~~l 149 (186)
++++++|+..|-+|..+
T Consensus 1026 ~sd~~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 1026 LSDPEEAVALLCKAKEW 1042 (1265)
T ss_pred hcCHHHHHHHHhhHhHH
Confidence 57788888776555443
No 329
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.00 E-value=7.8 Score=24.72 Aligned_cols=47 Identities=9% Similarity=0.131 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 134 EDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 134 g~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
.+.++|+..+.+++....+.. ..-.++.-+..+|..-|+|.+++++-
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~---~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDRE---DRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred chHHHHHHHHHHHHhhcCChH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999866532 33457777888999999999998864
No 330
>KOG1914|consensus
Probab=84.93 E-value=26 Score=30.73 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 120 KHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
.+++..|.+-....++..-|...|+--+..+.+.. .+-......+..+++=..|..+|+++
T Consensus 401 hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p------~yv~~YldfL~~lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 401 HVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSP------EYVLKYLDFLSHLNDDNNARALFERV 461 (656)
T ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 34555554432224888888888988888877643 22233345666778888888887764
No 331
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=84.81 E-value=5.1 Score=24.95 Aligned_cols=37 Identities=14% Similarity=0.074 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
.+++|.++..++ ......|++++|+.+|.++++.+..
T Consensus 4 ~~~~A~~li~~A-v~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 4 YLSKAKELISKA-LKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345566644443 5667788888888888888887654
No 332
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=84.39 E-value=9.2 Score=32.43 Aligned_cols=96 Identities=14% Similarity=0.215 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc---CC---------hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy5288 81 LCFVDAANCYKKSNPAEAIKAIERAVEIHTDM---GR---------FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAAD 148 (186)
Q Consensus 81 ~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~---~~---------~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~ 148 (186)
.++..+..+|+...|..|+--|+-|+++..+- ++ ...+..+..+|..||.. +++.+-|+.+-.+++.
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~-~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLR-MRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhh-cCCCchHHHHHhhhhh
Confidence 34667777887777777777777777775432 22 12344467899999998 5999999999999988
Q ss_pred HHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 149 CYAGEENKSSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 149 l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
+.+..- .-...-|-|...+.+|.+|...+
T Consensus 257 lnP~~f------rnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 257 LNPSYF------RNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred cCcchh------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 865421 12233456777778888876543
No 333
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=84.03 E-value=4 Score=25.39 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
+...|.-.... |++++|+.+|.+|++.+-.
T Consensus 9 l~~~Av~~D~~-g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 9 LIKQAVKEDED-GNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 34445555554 9999999999999998765
No 334
>KOG2053|consensus
Probab=83.72 E-value=11 Score=34.56 Aligned_cols=100 Identities=20% Similarity=0.228 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy5288 63 FLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDH 142 (186)
Q Consensus 63 y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~ 142 (186)
+.+..++.++.++...+ .++ ++-...+..+.++|..+++ ++...... + -..+.-+-.+|.+ ++++++|..+
T Consensus 29 l~~~~kllkk~Pn~~~a-~vL-kaLsl~r~gk~~ea~~~Le-~~~~~~~~---D--~~tLq~l~~~y~d-~~~~d~~~~~ 99 (932)
T KOG2053|consen 29 LAKLGKLLKKHPNALYA-KVL-KALSLFRLGKGDEALKLLE-ALYGLKGT---D--DLTLQFLQNVYRD-LGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHCCCcHHH-HHH-HHHHHHHhcCchhHHHHHh-hhccCCCC---c--hHHHHHHHHHHHH-HhhhhHHHHH
Confidence 33455555554433222 222 3333334447777775443 33332222 1 1256677888888 4889999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHH
Q psy5288 143 YQHAADCYAGEENKSSANKCLIKIANYSALTDHLDK 178 (186)
Q Consensus 143 y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~ 178 (186)
|+++...+++. .-+..+=..|++-++|.+
T Consensus 100 Ye~~~~~~P~e-------ell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 100 YERANQKYPSE-------ELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHhhCCcH-------HHHHHHHHHHHHHHHHHH
Confidence 99988887762 222333345555555543
No 335
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=83.66 E-value=4.3 Score=25.55 Aligned_cols=30 Identities=27% Similarity=0.258 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
+...|.-.... |+|++|..+|.++++++..
T Consensus 9 l~~~Ave~d~~-~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 9 LIRLALEKEEE-GDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHHHHHHH
Confidence 33334444443 8999999999999999764
No 336
>KOG1463|consensus
Probab=83.03 E-value=22 Score=29.37 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=73.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHH
Q psy5288 49 LFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM-GRFIMVAKHHENIA 126 (186)
Q Consensus 49 ~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~-~~~~~~a~~~~~lg 126 (186)
+|...++|.+|+..-...+.=.+++++...-...+..=.+.|-.+ +..+|...+--|-...... =.|..+|..-..-|
T Consensus 137 Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSG 216 (411)
T KOG1463|consen 137 LYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSG 216 (411)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhcc
Confidence 566777888888877777777777777665444444444455444 4455555444333222222 24556677777788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHH
Q psy5288 127 EIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKC 162 (186)
Q Consensus 127 ~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~ 162 (186)
.++-.. .+|.-|..||-+|.+-|...+.+..+-..
T Consensus 217 Ilha~e-kDykTafSYFyEAfEgf~s~~~~v~A~~s 251 (411)
T KOG1463|consen 217 ILHAAE-KDYKTAFSYFYEAFEGFDSLDDDVKALTS 251 (411)
T ss_pred ceeecc-cccchHHHHHHHHHccccccCCcHHHHHH
Confidence 888876 89999999999999988877665444333
No 337
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=82.85 E-value=30 Score=29.76 Aligned_cols=62 Identities=8% Similarity=0.037 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
.+.|+++...--+|. + |+|.+++-+-.=...+.|. ..++.-+|.++....+|++|.+++..+
T Consensus 460 ~eian~LaDAEyLys-q-gey~kc~~ys~WL~~iaPS-------~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 460 EEIANFLADAEYLYS-Q-GEYHKCYLYSSWLTKIAPS-------PQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHh-c-ccHHHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 346666666555555 4 9999998876666666552 368889999999999999999999764
No 338
>KOG0376|consensus
Probab=82.46 E-value=1.6 Score=37.14 Aligned_cols=94 Identities=16% Similarity=0.088 Sum_probs=59.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENI 125 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~l 125 (186)
++.+..-+.|+.|+..|.||+++ ++..+. .+.+=+..+.+. ++..|+.-+.+|+++-... ..+|+.-
T Consensus 11 an~~l~~~~fd~avdlysKaI~l-----dpnca~-~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~------~K~Y~rr 78 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL-----DPNCAI-YFANRALAHLKVESFGGALHDALKAIELDPTY------IKAYVRR 78 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc-----CCccee-eechhhhhheeechhhhHHHHHHhhhhcCchh------hheeeec
Confidence 34444556788888888888887 443333 333333455555 6777777777777665333 3466666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 126 AEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 126 g~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
|..... ++++-+|..-|++...+.++.
T Consensus 79 g~a~m~-l~~~~~A~~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 79 GTAVMA-LGEFKKALLDLEKVKKLAPND 105 (476)
T ss_pred cHHHHh-HHHHHHHHHHHHHhhhcCcCc
Confidence 666666 577888888887777776653
No 339
>KOG2053|consensus
Probab=82.09 E-value=4.5 Score=37.03 Aligned_cols=75 Identities=15% Similarity=0.090 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHH
Q psy5288 102 IERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIK 181 (186)
Q Consensus 102 ~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~ 181 (186)
+.+.-.+.++.++. .-...--|.++.. +|.+++|..+++--...... + -.++.-+-.||..+|++++|..
T Consensus 29 l~~~~kllkk~Pn~---~~a~vLkaLsl~r-~gk~~ea~~~Le~~~~~~~~-D-----~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 29 LAKLGKLLKKHPNA---LYAKVLKALSLFR-LGKGDEALKLLEALYGLKGT-D-----DLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHCCCc---HHHHHHHHHHHHH-hcCchhHHHHHhhhccCCCC-c-----hHHHHHHHHHHHHHhhhhHHHH
Confidence 33333444555443 2233345666666 59999999666554444333 2 2577777889999999999999
Q ss_pred HHHhC
Q psy5288 182 LYEQL 186 (186)
Q Consensus 182 ~~~~~ 186 (186)
+|+++
T Consensus 99 ~Ye~~ 103 (932)
T KOG2053|consen 99 LYERA 103 (932)
T ss_pred HHHHH
Confidence 99874
No 340
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=82.06 E-value=4.1 Score=21.68 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 161 KCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 161 ~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
+.+..+|-++-..|+|++|+++|+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 355677889999999999999943
No 341
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=81.76 E-value=10 Score=23.56 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
+..-|.-+... |++++|+.+|.+|++.+..
T Consensus 11 li~~Av~~d~~-g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 11 LISKALKADEA-GDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 44445555664 9999999999999998765
No 342
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=81.74 E-value=14 Score=25.18 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=48.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-----CHH-------HHHHHHHHHHHHHHHcCChhH
Q psy5288 50 FKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-----NPA-------EAIKAIERAVEIHTDMGRFIM 117 (186)
Q Consensus 50 ~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-----~~~-------~A~~~~~~Al~i~~~~~~~~~ 117 (186)
+...|++.+|++.-+..+.....- ......+..=|.++.++ +++ -++++|.++..+....
T Consensus 6 ~~~rGnhiKAL~iied~i~~h~~~---~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~----- 77 (111)
T PF04781_consen 6 YFARGNHIKALEIIEDLISRHGED---ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS----- 77 (111)
T ss_pred HHHccCHHHHHHHHHHHHHHccCC---CchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH-----
Confidence 445677777777666665553322 21123333445555432 333 4555555555544333
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADC 149 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l 149 (186)
|..+..+|.-+..- .-|+++..--++++.+
T Consensus 78 -A~~L~~la~~l~s~-~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 78 -AHSLFELASQLGSV-KYYKKAVKKAKRGLSV 107 (111)
T ss_pred -HHHHHHHHHHhhhH-HHHHHHHHHHHHHhcc
Confidence 77777777776653 4566666666666554
No 343
>KOG0686|consensus
Probab=81.60 E-value=18 Score=30.56 Aligned_cols=78 Identities=10% Similarity=0.147 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHH
Q psy5288 100 KAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKA 179 (186)
Q Consensus 100 ~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A 179 (186)
+-++.=++-++.+.-.+.+-..+..+|.-|... |+.+.|+.+|-++-+++...++ ....+.|+-.|-+..|+|..-
T Consensus 131 e~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~c-G~l~~Alr~YsR~RdYCTs~kh---vInm~ln~i~VSI~~~nw~hv 206 (466)
T KOG0686|consen 131 EKLDNELKSYKDNLIKESIRRALEDLGDHYLDC-GQLDNALRCYSRARDYCTSAKH---VINMCLNLILVSIYMGNWGHV 206 (466)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHh-ccHHHHHhhhhhhhhhhcchHH---HHHHHHHHHHHHHhhcchhhh
Confidence 344444555666666677788999999999996 9999999999999998876542 345667777888888887654
Q ss_pred HH
Q psy5288 180 IK 181 (186)
Q Consensus 180 ~~ 181 (186)
..
T Consensus 207 ~s 208 (466)
T KOG0686|consen 207 LS 208 (466)
T ss_pred hh
Confidence 43
No 344
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=81.56 E-value=10 Score=23.59 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 123 ENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 123 ~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
..-|.-... .|+|++|+.+|.+|++.+-.
T Consensus 10 ~~~Av~~D~-~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 10 VKKAIEEDN-AGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHH
Confidence 333444445 49999999999999999764
No 345
>KOG1464|consensus
Probab=81.46 E-value=23 Score=28.44 Aligned_cols=92 Identities=17% Similarity=0.223 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHH
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSA 159 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~ 159 (186)
..|.--.++|... +...-...|++|+-+-.....+.-.+.+..--|.++... |++++|-.-|=+|..-+.+.|+|..-
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlre-g~fe~AhTDFFEAFKNYDEsGspRRt 270 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLRE-GEFEKAHTDFFEAFKNYDESGSPRRT 270 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCcccccc-chHHHHHhHHHHHHhcccccCCcchh
Confidence 3333334566555 334445578899888777776666666777777888876 99999999999999988888877553
Q ss_pred HHHH--HHHHHHHHhcc
Q psy5288 160 NKCL--IKIANYSALTD 174 (186)
Q Consensus 160 ~~~~--~~la~~y~~~g 174 (186)
.|+ .-||+.+.+.|
T Consensus 271 -tCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 271 -TCLKYLVLANMLMKSG 286 (440)
T ss_pred -HHHHHHHHHHHHHHcC
Confidence 454 55677776654
No 346
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=81.05 E-value=24 Score=27.36 Aligned_cols=77 Identities=22% Similarity=0.231 Sum_probs=49.8
Q ss_pred ChhHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHH-cC-ChhHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy5288 75 NKHDAGLCFVDAANCYKKS-----------NPAEAIKAIERAVEIHTD-MG-RFIMVAKHHENIAEIYEKELEDQEKAID 141 (186)
Q Consensus 75 ~~~~aa~~~~~a~~~y~~~-----------~~~~A~~~~~~Al~i~~~-~~-~~~~~a~~~~~lg~~y~~~lg~~~~Ai~ 141 (186)
+++....++.--|..|+-. -.++|.++|++|.++... +. ..+..-....+.+..|..-+|+.++|+.
T Consensus 111 ~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ 190 (236)
T PF00244_consen 111 SPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIE 190 (236)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHH
T ss_pred chhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 4444455554468888653 136899999999999988 43 3344444444455554444699999999
Q ss_pred HHHHHHHHHh
Q psy5288 142 HYQHAADCYA 151 (186)
Q Consensus 142 ~y~kA~~l~~ 151 (186)
.-++|.+-..
T Consensus 191 ia~~afd~a~ 200 (236)
T PF00244_consen 191 IAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776643
No 347
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=80.66 E-value=7.6 Score=24.07 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
+.|+.+ .+.|.-....|++++|+++|..+++.+..
T Consensus 4 ~~a~~l-~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 4 QQAKEL-IKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 445553 33446677778888888888888887654
No 348
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=80.37 E-value=6.4 Score=24.71 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=20.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 126 AEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 126 g~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
|.-.-. .|+|++|+.+|.++++.+..
T Consensus 13 Av~~D~-~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 13 AVKKDQ-RGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHH-hccHHHHHHHHHHHHHHHHH
Confidence 333344 49999999999999998764
No 349
>PRK10941 hypothetical protein; Provisional
Probab=80.34 E-value=14 Score=29.29 Aligned_cols=67 Identities=10% Similarity=0.016 Sum_probs=54.6
Q ss_pred HcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 111 DMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 111 ~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
...+..-....+.++=.+|... ++++.|+.+-+..+.+.++.. .-+..-|.+|.++|.+..|+.-++
T Consensus 173 ~a~~~~il~Rml~nLK~~~~~~-~~~~~AL~~~e~ll~l~P~dp------~e~RDRGll~~qL~c~~~A~~DL~ 239 (269)
T PRK10941 173 EADNIEVIRKLLDTLKAALMEE-KQMELALRASEALLQFDPEDP------YEIRDRGLIYAQLDCEHVALSDLS 239 (269)
T ss_pred CCCHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCcHHHHHHHH
Confidence 3355567778889999999996 999999999999999987642 334667999999999999987554
No 350
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=80.14 E-value=7 Score=24.55 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
.+|++...+| .-....|++++|.++|..+++.+..
T Consensus 4 ~~A~~l~~~A-ve~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 4 EQAAELIRLA-LEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4455555554 3344557777777777777776654
No 351
>KOG1308|consensus
Probab=80.00 E-value=1.3 Score=36.13 Aligned_cols=103 Identities=21% Similarity=0.119 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHH
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPA 96 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~ 96 (186)
..|.++.|++.|..+ +.+|..++++..|+.-+..+++| +++.+..+- --+...+.+ ++.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei-----n~Dsa~~yk-frg~A~rllg~~e 199 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI-----NPDSAKGYK-FRGYAERLLGNWE 199 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc-----Ccccccccc-hhhHHHHHhhchH
Confidence 456778888887777 55788889999999999999988 454443222 112222333 667
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAID 141 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~ 141 (186)
+|.+.+..++++--+...-.-.-.+.-+++.+-+.. +.++++.+
T Consensus 200 ~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~-~k~er~~~ 243 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHR-RKYERARE 243 (377)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHhccchhhhhhch-hHHHHHHH
Confidence 777777777665433322222223334444444443 44554444
No 352
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=79.76 E-value=7.3 Score=20.70 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH--HHHHHH
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQ--HAADCY 150 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~--kA~~l~ 150 (186)
.+..+|-.+..+ |++++|+..|+ -+..+.
T Consensus 3 ~~y~~a~~~y~~-~ky~~A~~~~~y~~l~~ld 33 (36)
T PF07720_consen 3 YLYGLAYNFYQK-GKYDEAIHFFQYAFLCALD 33 (36)
T ss_dssp HHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-hhHHHHHHHHHHHHHHHhc
Confidence 455677777776 99999999955 665553
No 353
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.73 E-value=7.8 Score=31.25 Aligned_cols=57 Identities=21% Similarity=0.094 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+...+..|... |.+.+|+++.++++.+.+-+ ...+.-+-.+|...||--.|++.|++
T Consensus 282 lgkva~~yle~-g~~neAi~l~qr~ltldpL~------e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 282 LGKVARAYLEA-GKPNEAIQLHQRALTLDPLS------EQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHc-CChHHHHHHHHHHhhcChhh------hHHHHHHHHHHHHhccchhhhhHHHH
Confidence 45556667775 99999999999999986643 25667777888899997777777765
No 354
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=79.55 E-value=6 Score=20.09 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcC-----CHHHHHHHHHHHHH
Q psy5288 82 CFVDAANCYKKS-----NPAEAIKAIERAVE 107 (186)
Q Consensus 82 ~~~~a~~~y~~~-----~~~~A~~~~~~Al~ 107 (186)
+...+|.+|... ++.+|+.+|++|.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 345778887653 78899999998865
No 355
>KOG0276|consensus
Probab=79.43 E-value=25 Score=31.27 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHH------HHHcCChhHHHHHHHHHHHHHHHh------------cCCHHHHHH
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERAVEI------HTDMGRFIMVAKHHENIAEIYEKE------------LEDQEKAID 141 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~Al~i------~~~~~~~~~~a~~~~~lg~~y~~~------------lg~~~~Ai~ 141 (186)
.-|..+|+..... ++..|.+|+.+|-++ +...|+.. .+..+|..-..+ +|+++++.+
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~----~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAE----GLAVLASLAKKQGKNNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChh----HHHHHHHHHHhhcccchHHHHHHHcCCHHHHHH
Confidence 4566777777765 889999999998775 34456644 233333333332 366666665
Q ss_pred HHHHH
Q psy5288 142 HYQHA 146 (186)
Q Consensus 142 ~y~kA 146 (186)
.+.+.
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 55444
No 356
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=78.97 E-value=3.8 Score=20.54 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 162 CLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 162 ~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+|..+-..+.+.|+++.|..+|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~ 26 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDE 26 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 567778889999999999999875
No 357
>KOG3364|consensus
Probab=78.94 E-value=12 Score=26.66 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 119 AKHHENIAEIYEKE--LEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 119 a~~~~~lg~~y~~~--lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..+.++++.++... -.+..+-|..++..+. ..+|.....|..-||.-+.++|+|++++.+.+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ 96 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDA 96 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHH
Confidence 34667777776532 2456778888888776 122333457888899999999999999998764
No 358
>PF13041 PPR_2: PPR repeat family
Probab=78.81 E-value=3.3 Score=23.27 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 161 KCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 161 ~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+|.-+-..|.+.|++++|.++|++
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~ 28 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKE 28 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 4677788899999999999999986
No 359
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=78.59 E-value=41 Score=28.72 Aligned_cols=113 Identities=18% Similarity=0.206 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---cCChh---------HHHHHHHHHHHHHhcC-CHHHHHH
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK---NNNKH---------DAGLCFVDAANCYKKS-NPAEAIK 100 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~---~~~~~---------~aa~~~~~a~~~y~~~-~~~~A~~ 100 (186)
|+.|+=+..-.+-+..+.++++|..|+--|.-++++..+ ++++. -+...-.++..||... +++-|+.
T Consensus 170 PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALn 249 (569)
T PF15015_consen 170 PQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALN 249 (569)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHH
Confidence 555655554444455566677888888888888887664 22221 1334455788999987 8899998
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 101 AIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 101 ~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
+-.+++-+....= .-+..-|.++.- |.+|.+|..-..-|.-+|--.
T Consensus 250 h~hrsI~lnP~~f------rnHLrqAavfR~-LeRy~eAarSamia~ymywl~ 295 (569)
T PF15015_consen 250 HSHRSINLNPSYF------RNHLRQAAVFRR-LERYSEAARSAMIADYMYWLS 295 (569)
T ss_pred HHhhhhhcCcchh------hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 8888776543221 112334555555 577777777776666665543
No 360
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=77.69 E-value=9.3 Score=24.34 Aligned_cols=18 Identities=6% Similarity=0.195 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy5288 94 NPAEAIKAIERAVEIHTD 111 (186)
Q Consensus 94 ~~~~A~~~~~~Al~i~~~ 111 (186)
++++|+.+|++++.+..+
T Consensus 23 ~~e~Al~~Y~~gi~~l~e 40 (79)
T cd02679 23 DKEQALAHYRKGLRELEE 40 (79)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 556666666666665543
No 361
>KOG0376|consensus
Probab=76.80 E-value=1.7 Score=36.87 Aligned_cols=80 Identities=16% Similarity=0.076 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh
Q psy5288 93 SNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSAL 172 (186)
Q Consensus 93 ~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~ 172 (186)
..++.|+..|-+|+++....- .++.+=+..+.. .+++..|+.=..+|+++.+. ...+|..-|....+
T Consensus 18 ~~fd~avdlysKaI~ldpnca------~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~------~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCA------IYFANRALAHLK-VESFGGALHDALKAIELDPT------YIKAYVRRGTAVMA 84 (476)
T ss_pred chHHHHHHHHHHHHhcCCcce------eeechhhhhhee-echhhhHHHHHHhhhhcCch------hhheeeeccHHHHh
Confidence 378999999999998876442 234444455666 48999999999999998643 24788888999999
Q ss_pred ccCHHHHHHHHHh
Q psy5288 173 TDHLDKAIKLYEQ 185 (186)
Q Consensus 173 ~g~~~~A~~~~~~ 185 (186)
++++.+|...|+.
T Consensus 85 l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 85 LGEFKKALLDLEK 97 (476)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988875
No 362
>KOG4014|consensus
Probab=76.46 E-value=17 Score=27.41 Aligned_cols=83 Identities=14% Similarity=0.023 Sum_probs=54.5
Q ss_pred HHHHHH-HHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Q psy5288 95 PAEAIK-AIERAVEIHTDMGRFIMVAKHHENIAEIYEK----ELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANY 169 (186)
Q Consensus 95 ~~~A~~-~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~----~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~ 169 (186)
+-++|+ -|+.|+.+++.+=+..+-+..+.+.|..+.. .-+++..|+.+|+.|-+... .....++|.+
T Consensus 43 YlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~--------~~aC~~~gLl 114 (248)
T KOG4014|consen 43 YLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANI--------PQACRYLGLL 114 (248)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCC--------HHHHhhhhhh
Confidence 334443 6677777777665555556677778877642 02679999999999988421 2445677777
Q ss_pred HHh-----cc--CHHHHHHHHHh
Q psy5288 170 SAL-----TD--HLDKAIKLYEQ 185 (186)
Q Consensus 170 y~~-----~g--~~~~A~~~~~~ 185 (186)
.+. .+ +..+|.+++.|
T Consensus 115 ~~~g~~~r~~dpd~~Ka~~y~tr 137 (248)
T KOG4014|consen 115 HWNGEKDRKADPDSEKAERYMTR 137 (248)
T ss_pred hccCcCCccCCCCcHHHHHHHHH
Confidence 752 23 47888888765
No 363
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.05 E-value=6.6 Score=21.94 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy5288 123 ENIAEIYEKELEDQEKAIDHYQHAAD 148 (186)
Q Consensus 123 ~~lg~~y~~~lg~~~~Ai~~y~kA~~ 148 (186)
.++|..|... |+++.|.+.+++.+.
T Consensus 3 LdLA~ayie~-Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEM-GDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHc-CChHHHHHHHHHHHH
Confidence 4689999995 999999999999984
No 364
>KOG3824|consensus
Probab=75.77 E-value=14 Score=30.09 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+...+..+. + |+.++|...|+.|+.+.+.. .+++..+|.+..--.+..+|-.+|-+
T Consensus 120 l~~A~~~~~-~-Gk~ekA~~lfeHAlalaP~~------p~~L~e~G~f~E~~~~iv~ADq~Y~~ 175 (472)
T KOG3824|consen 120 LKAAGRSRK-D-GKLEKAMTLFEHALALAPTN------PQILIEMGQFREMHNEIVEADQCYVK 175 (472)
T ss_pred HHHHHHHHh-c-cchHHHHHHHHHHHhcCCCC------HHHHHHHhHHHHhhhhhHhhhhhhhe
Confidence 334455544 3 99999999999999998764 37888999998888888888887754
No 365
>KOG1920|consensus
Probab=75.65 E-value=23 Score=33.84 Aligned_cols=105 Identities=15% Similarity=0.160 Sum_probs=54.2
Q ss_pred HcCChhHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHH-----
Q psy5288 72 KNNNKHDAGLCFVDAA---NCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHY----- 143 (186)
Q Consensus 72 ~~~~~~~aa~~~~~a~---~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y----- 143 (186)
+..||.+=...++++= ..+++-..+.=+.-|.+|+.-....|. .++...=++-.+. |-|++|..+|
T Consensus 863 SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~-----~~~~e~~n~I~kh-~Ly~~aL~ly~~~~e 936 (1265)
T KOG1920|consen 863 SQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGE-----TYFPECKNYIKKH-GLYDEALALYKPDSE 936 (1265)
T ss_pred hccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCc-----cccHHHHHHHHhc-ccchhhhheeccCHH
Confidence 3556776666666654 333333445555566666655555541 0122222222344 5566666554
Q ss_pred --HHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 144 --QHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 144 --~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++.+.+|.+ +-....-+.+-|..|...|+.++|++.|..
T Consensus 937 ~~k~i~~~ya~---hL~~~~~~~~Aal~Ye~~GklekAl~a~~~ 977 (1265)
T KOG1920|consen 937 KQKVIYEAYAD---HLREELMSDEAALMYERCGKLEKALKAYKE 977 (1265)
T ss_pred HHHHHHHHHHH---HHHHhccccHHHHHHHHhccHHHHHHHHHH
Confidence 333333332 111123345566777888888888887753
No 366
>KOG4322|consensus
Probab=75.44 E-value=51 Score=28.12 Aligned_cols=91 Identities=10% Similarity=-0.122 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhc
Q psy5288 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALT 173 (186)
Q Consensus 94 ~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~ 173 (186)
++..|.+...+..--.....+......++..++.++.+ .+..-.+..+.-.+.....+-..+......-.+++.....+
T Consensus 288 q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~-g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~L 366 (482)
T KOG4322|consen 288 QVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARES-GDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLAL 366 (482)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhc-CCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHc
Confidence 45556665555544444445677888899999999997 48888888888888887776666656667778899999999
Q ss_pred cCHHHHHHHHHh
Q psy5288 174 DHLDKAIKLYEQ 185 (186)
Q Consensus 174 g~~~~A~~~~~~ 185 (186)
|-.++|......
T Consensus 367 G~pk~Al~lLh~ 378 (482)
T KOG4322|consen 367 GSPKAALPLLHT 378 (482)
T ss_pred CChHHHHHHHHh
Confidence 999999887653
No 367
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=74.45 E-value=7.7 Score=36.21 Aligned_cols=83 Identities=12% Similarity=0.002 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHcC-ChhH---HHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Q psy5288 98 AIKAIERAVEIHTDMG-RFIM---VAKHHENIAEIYEKE---LEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYS 170 (186)
Q Consensus 98 A~~~~~~Al~i~~~~~-~~~~---~a~~~~~lg~~y~~~---lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y 170 (186)
|-+.|.+|+..|+..+ ++++ --...+.+|.....+ .|+. +-|.+|+.-|........+.--|..-|.||
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYLHGGVGAPLEYLGKALVY 562 (932)
T ss_pred hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhcCCCCCchHHHhHHHHH
Confidence 4455555555554442 2221 223456667665442 1332 667777777776544444455567778999
Q ss_pred HhccCHHHHHHHHH
Q psy5288 171 ALTDHLDKAIKLYE 184 (186)
Q Consensus 171 ~~~g~~~~A~~~~~ 184 (186)
-++|+|++=+++|.
T Consensus 563 ~~~~~~~~~~~~~~ 576 (932)
T PRK13184 563 QRLGEYNEEIKSLL 576 (932)
T ss_pred HHhhhHHHHHHHHH
Confidence 99999999999875
No 368
>KOG3783|consensus
Probab=73.15 E-value=64 Score=28.23 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=64.8
Q ss_pred cCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH-HHHcCChhHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHH
Q psy5288 73 NNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEI-HTDMGRFIMVAKHHENIAEIYEKELED-QEKAIDHYQHAADC 149 (186)
Q Consensus 73 ~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i-~~~~~~~~~~a~~~~~lg~~y~~~lg~-~~~Ai~~y~kA~~l 149 (186)
..+.+...-.+.-.|.+.+.+ +...|..+|+..++= .....+++..+..+.++|.+|.++ +. ..++..++.+|-+.
T Consensus 442 ~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~-~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 442 IDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDL-GGGLKEARALLLKAREY 520 (546)
T ss_pred CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc-ccChHHHHHHHHHHHhh
Confidence 346677777777788888877 888899999887754 455578899999999999999996 77 99999999999998
Q ss_pred Hhc
Q psy5288 150 YAG 152 (186)
Q Consensus 150 ~~~ 152 (186)
+..
T Consensus 521 ~~d 523 (546)
T KOG3783|consen 521 ASD 523 (546)
T ss_pred ccc
Confidence 654
No 369
>KOG2561|consensus
Probab=72.52 E-value=31 Score=29.47 Aligned_cols=80 Identities=19% Similarity=0.161 Sum_probs=55.5
Q ss_pred HhHHHHHHHHHHhhccCCCCc-ccccc---CCCCHHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHH
Q psy5288 6 QKARQLVAEAEKKISSSSKGF-FSQFT---GGNKTDEAIDL--YVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDA 79 (186)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~-~~~~~---~~~~~~~A~~~--y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~a 79 (186)
.+|+..+..|+|.+. .+.|= ++|++ +....+.|+-+ +.--|.++..+|+-++|.++++.+-..+..+.-++..
T Consensus 228 ~DAe~RL~ra~kgf~-~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~ 306 (568)
T KOG2561|consen 228 PDAEVRLVRARKGFE-RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDET 306 (568)
T ss_pred ChHHHHHHHHHHhhh-hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchH
Confidence 578888889999988 32232 56655 44555666543 3444888999999999999999999888776555555
Q ss_pred HHHHHHH
Q psy5288 80 GLCFVDA 86 (186)
Q Consensus 80 a~~~~~a 86 (186)
....-.+
T Consensus 307 lsllv~m 313 (568)
T KOG2561|consen 307 LSLLVGM 313 (568)
T ss_pred HHHHHHc
Confidence 4444444
No 370
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=72.17 E-value=59 Score=27.39 Aligned_cols=57 Identities=21% Similarity=0.127 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHH--HHh------cCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcc
Q psy5288 118 VAKHHENIAEIY--EKE------LEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTD 174 (186)
Q Consensus 118 ~a~~~~~lg~~y--~~~------lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g 174 (186)
.+-.+..+|.+| ... +.+.-++.-++--|..-+.+.+.+..+..||.+.-.+|...|
T Consensus 340 ~alllE~~a~~~~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~~ 404 (414)
T PF12739_consen 340 SALLLEQAAYCYASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGKG 404 (414)
T ss_pred hHHHHHHHHHhhcccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCC
Confidence 667778888888 320 112567777788888888888999898899999888887554
No 371
>KOG4322|consensus
Probab=71.25 E-value=65 Score=27.50 Aligned_cols=143 Identities=10% Similarity=-0.009 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC--------------------
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-------------------- 93 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-------------------- 93 (186)
+++...++...+-+.++....++..|....++..-...+..+.......+.-++.++.+.
T Consensus 267 ~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey 346 (482)
T KOG4322|consen 267 GDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY 346 (482)
T ss_pred chHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh
Confidence 688888888777788888888888888888877776666666665566666666665532
Q ss_pred --C-------------------HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-------HHHhcCCHHHHHHHHHH
Q psy5288 94 --N-------------------PAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEI-------YEKELEDQEKAIDHYQH 145 (186)
Q Consensus 94 --~-------------------~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~-------y~~~lg~~~~Ai~~y~k 145 (186)
+ +..|+..+..+..+....|-....+....-.++| +.+ .+.+.++.+.++
T Consensus 347 ~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~~~--e~ld~~~~~L~~ 424 (482)
T KOG4322|consen 347 SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSCAN--ESLDGFPRYLDL 424 (482)
T ss_pred ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhhhh--hhHHhhHHHHHH
Confidence 1 2234444444444444444333332222111111 122 457777888888
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHHHhccCHHH
Q psy5288 146 AADCYAGEENKSSANKCLIKIANYSALTDHLDK 178 (186)
Q Consensus 146 A~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~ 178 (186)
|-.++.+.+-+.-+.++..-.+.+|-..||-++
T Consensus 425 A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~e 457 (482)
T KOG4322|consen 425 AQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPE 457 (482)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHhhcCchH
Confidence 888887776555555666667777777776543
No 372
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=70.66 E-value=61 Score=26.99 Aligned_cols=119 Identities=21% Similarity=0.286 Sum_probs=69.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHc----CC---hhHHHHHHHHHHHHHHHh---
Q psy5288 68 TLHLKNNNKHDAGLCFVDAANCYKKS-----NPAEAIKAIERAVEIHTDM----GR---FIMVAKHHENIAEIYEKE--- 132 (186)
Q Consensus 68 ~~~~~~~~~~~aa~~~~~a~~~y~~~-----~~~~A~~~~~~Al~i~~~~----~~---~~~~a~~~~~lg~~y~~~--- 132 (186)
..+.--|............+..|..+ +++.-+...++-++++... +. ....-.+++.+|.+|...
T Consensus 159 ~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~~~~rql~fElae~~~~i~dl 238 (371)
T PF12309_consen 159 EYFVLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYYLNLCRQLWFELAEIYSEIMDL 238 (371)
T ss_pred HHccccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555566666677777654 6667777776666665322 21 123344667777776541
Q ss_pred ----cC-------------------CHHHHHHHHHHHHHHHhcc-----------CChHHHHHHHHHHHHHHHhc-----
Q psy5288 133 ----LE-------------------DQEKAIDHYQHAADCYAGE-----------ENKSSANKCLIKIANYSALT----- 173 (186)
Q Consensus 133 ----lg-------------------~~~~Ai~~y~kA~~l~~~~-----------~~~~~~~~~~~~la~~y~~~----- 173 (186)
+. -..+||.+|+.=++.+... +.......++..+|.+|.+.
T Consensus 239 k~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~ 318 (371)
T PF12309_consen 239 KLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDP 318 (371)
T ss_pred HHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCCh
Confidence 11 1356777888777776632 11222335788999998654
Q ss_pred ----cCHHHHHHHHHhC
Q psy5288 174 ----DHLDKAIKLYEQL 186 (186)
Q Consensus 174 ----g~~~~A~~~~~~~ 186 (186)
++..+++++|+.|
T Consensus 319 ~~~~~~l~~sl~~y~~v 335 (371)
T PF12309_consen 319 KEQLENLEKSLEYYKWV 335 (371)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 6777788877653
No 373
>KOG1463|consensus
Probab=70.21 E-value=62 Score=26.84 Aligned_cols=136 Identities=10% Similarity=0.049 Sum_probs=80.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy5288 46 AGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS--NPAEAIKAIERAVEIHTDMGRFIMVAKHHE 123 (186)
Q Consensus 46 ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~--~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~ 123 (186)
.|+++-..|+..+=.+.....-..+...+.+ .++..-..+.+.+... ....-+..+...++-....+..-..-..--
T Consensus 54 l~~ll~~~~~~~~lr~li~~~Rpf~~~v~Ka-kaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Lea 132 (411)
T KOG1463|consen 54 LGDLLAKEGDAEELRDLITSLRPFLSSVSKA-KAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEA 132 (411)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3556666676666666555555555444432 2333344445555443 345556666666666555555444444556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 124 NIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 124 ~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
++..+|.+ .++|.+|+..-...+.=.++.++......+..-=..+|..+.+..+|...+
T Consensus 133 rli~Ly~d-~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasL 191 (411)
T KOG1463|consen 133 RLIRLYND-TKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASL 191 (411)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHH
Confidence 78888888 499999999887777777765544444444444455566666666665443
No 374
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=67.88 E-value=11 Score=29.47 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=36.8
Q ss_pred cCCCCHHHHHHHHHHHHHH--------------HHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHh
Q psy5288 31 TGGNKTDEAIDLYVRAGNL--------------FKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYK 91 (186)
Q Consensus 31 ~~~~~~~~A~~~y~~ag~~--------------~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~ 91 (186)
+.+++.+.+++.|+++... ....|+++.|+..|.+.+++ +|+.....-.+++.+-.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l-----dp~D~~gaa~kLa~lg~ 75 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL-----DPEDHGGAALKLAVLGR 75 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC-----CcccccchhhhHHhhcC
Confidence 3567888888888888543 45677777777777777777 55554444445555443
No 375
>KOG2581|consensus
Probab=67.60 E-value=77 Score=26.95 Aligned_cols=143 Identities=13% Similarity=0.042 Sum_probs=86.2
Q ss_pred HHHHHHHHHHH-HH-hcCCHHHHHHHHHHHHHHHHHcCChh----HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q psy5288 39 AIDLYVRAGNL-FK-LGKKWNDGGNAFLQAGTLHLKNNNKH----DAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTD 111 (186)
Q Consensus 39 A~~~y~~ag~~-~~-~~g~~~~A~~~y~~a~~~~~~~~~~~----~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~ 111 (186)
-+++|.....+ |. ..+++.+|..+-...+--. ..++.. -++..|.=+..+|+.. +...-..++..-+..-..
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i-~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL 201 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASI-SIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL 201 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh
Confidence 35666665443 32 3467777776654433321 122221 2344554555555544 433333334333333333
Q ss_pred cCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 112 MGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 112 ~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
-.+..+.+...+-|=+.|... +.|++|-..-.++. +++.........++.-+|.+-.-.++|..|.++|-+
T Consensus 202 rhd~e~qavLiN~LLr~yL~n-~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~q 272 (493)
T KOG2581|consen 202 RHDEEGQAVLINLLLRNYLHN-KLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQ 272 (493)
T ss_pred cCcchhHHHHHHHHHHHHhhh-HHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHH
Confidence 447888888888888888875 78888887766654 333322224457888899999999999999999854
No 376
>KOG3783|consensus
Probab=67.57 E-value=86 Score=27.48 Aligned_cols=73 Identities=15% Similarity=-0.023 Sum_probs=58.8
Q ss_pred cCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHhccC-HHHHHHHHHh
Q psy5288 112 MGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYA-GEENKSSANKCLIKIANYSALTDH-LDKAIKLYEQ 185 (186)
Q Consensus 112 ~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~-~~~~~~~~~~~~~~la~~y~~~g~-~~~A~~~~~~ 185 (186)
.++.+...-.+.-+|-++.. ||+-..|..+|...++-.. ...++...+..+..+|.+|..+|. .+++..++.+
T Consensus 442 ~~d~Dd~~lk~lL~g~~lR~-Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~k 516 (546)
T KOG3783|consen 442 IDDSDDEGLKYLLKGVILRN-LGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLK 516 (546)
T ss_pred CCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 34777777788889999998 7999999999998886533 234555556788999999999988 8888888765
No 377
>KOG0890|consensus
Probab=67.52 E-value=80 Score=32.70 Aligned_cols=82 Identities=13% Similarity=0.019 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhc
Q psy5288 95 PAEAIKAIERAVEIHTDM-GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALT 173 (186)
Q Consensus 95 ~~~A~~~~~~Al~i~~~~-~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~ 173 (186)
..+-+-.++++....... +-..+.+.++...|++-..- |.++.|-.+.-+|.+.- .+......|..++..
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~a-G~~q~A~nall~A~e~r--------~~~i~~E~AK~lW~~ 1715 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLA-GHLQRAQNALLNAKESR--------LPEIVLERAKLLWQT 1715 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhc-ccHHHHHHHHHhhhhcc--------cchHHHHHHHHHHhh
Confidence 356666777776665555 55678999999999999984 99999999999998853 236788999999999
Q ss_pred cCHHHHHHHHHh
Q psy5288 174 DHLDKAIKLYEQ 185 (186)
Q Consensus 174 g~~~~A~~~~~~ 185 (186)
|+-.+|+.++++
T Consensus 1716 gd~~~Al~~Lq~ 1727 (2382)
T KOG0890|consen 1716 GDELNALSVLQE 1727 (2382)
T ss_pred ccHHHHHHHHHH
Confidence 999999999875
No 378
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=67.13 E-value=16 Score=18.84 Aligned_cols=30 Identities=30% Similarity=0.425 Sum_probs=19.7
Q ss_pred HHHHHHH--HHHHHhc----CCHHHHHHHHHHHHHH
Q psy5288 120 KHHENIA--EIYEKEL----EDQEKAIDHYQHAADC 149 (186)
Q Consensus 120 ~~~~~lg--~~y~~~l----g~~~~Ai~~y~kA~~l 149 (186)
.....+| .+|..-. .++++|+.+|++|.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 3556777 5555421 1478999999998763
No 379
>KOG1538|consensus
Probab=67.13 E-value=1e+02 Score=28.09 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHH
Q psy5288 162 CLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 162 ~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
.+..++.-+.++..+.-|.+.|.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~ 771 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFL 771 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHH
Confidence 34444444444444444444443
No 380
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=66.33 E-value=93 Score=27.56 Aligned_cols=92 Identities=11% Similarity=-0.006 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGR 114 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~ 114 (186)
.|.-|+-.+-.+-.+...-|+ +.+++.|.+|....+..=+-...-.+-...|.+|+..++.+|+++|-+|.++...=+-
T Consensus 275 ~YPmALg~LadLeEi~pt~~r-~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY 353 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGR-PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNY 353 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS---HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB-
T ss_pred hCchhhhhhHhHHhhccCCCC-CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 566666666666665554443 3457777777777665333333344444667777888999999999999988766654
Q ss_pred hhHHHHHHHHHHH
Q psy5288 115 FIMVAKHHENIAE 127 (186)
Q Consensus 115 ~~~~a~~~~~lg~ 127 (186)
...--.+|-.+-.
T Consensus 354 ~reDeEiYKEfle 366 (618)
T PF05053_consen 354 SREDEEIYKEFLE 366 (618)
T ss_dssp -GGGHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 3333334433333
No 381
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=65.55 E-value=18 Score=34.90 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhc
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALT 173 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~ 173 (186)
...+....-+|.++.- .|.+.+|+.+|.+|+++.+..+++.|.+.++..++.+..-+
T Consensus 239 r~~gR~~k~~gd~~Ll-aG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~ 295 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLL-AGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLL 295 (1185)
T ss_pred hhhhhhhhhhhhHHHH-cCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHH
Confidence 3455677778999887 69999999999999999999999999999998887766533
No 382
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=65.47 E-value=21 Score=23.18 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 140 IDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 140 i~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+..+++++.-.+++ ......+|..+...|++++|++.+-.
T Consensus 8 ~~al~~~~a~~P~D------~~ar~~lA~~~~~~g~~e~Al~~Ll~ 47 (90)
T PF14561_consen 8 IAALEAALAANPDD------LDARYALADALLAAGDYEEALDQLLE 47 (90)
T ss_dssp HHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45566666654432 25667888888888888888887643
No 383
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=65.01 E-value=49 Score=27.93 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---cCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAG---EENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
+..|.+++-- ||+|..|+...+- +++.++ ...+..-..++..+|-+|.=+++|.+|+..|..+
T Consensus 125 ligLlRvh~L-LGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 125 LIGLLRVHCL-LGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHh-ccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666 7999999988632 222111 1223333467889999999999999999999753
No 384
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.00 E-value=22 Score=28.61 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 134 EDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 134 g~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
|++..|...+..++...++++ ....-++++|...|+.+.|...+..
T Consensus 148 e~~~~a~~~~~~al~~~~~~~------~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPENS------EAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred cchhhHHHHHHHHHHhCcccc------hHHHHHHHHHHHcCChHHHHHHHHh
Confidence 899999999999999977653 5778899999999999999988864
No 385
>KOG4521|consensus
Probab=64.89 E-value=1.4e+02 Score=29.00 Aligned_cols=152 Identities=11% Similarity=0.035 Sum_probs=86.5
Q ss_pred ccCCCCHHHHHHHHHHHHH-----------HHH--------hcCC----HHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy5288 30 FTGGNKTDEAIDLYVRAGN-----------LFK--------LGKK----WNDGGNAFLQAGTLHLKNNNKHDAGLCFVDA 86 (186)
Q Consensus 30 ~~~~~~~~~A~~~y~~ag~-----------~~~--------~~g~----~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a 86 (186)
+++.|+..+|+.||.+|.. ++. ..|+ ...|.++|.++..+++..+.++.+...-..+
T Consensus 930 yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~A 1009 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKA 1009 (1480)
T ss_pred eecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4577899999999999943 222 2232 3457889999999999888887765444343
Q ss_pred HHHHhcC------------CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHH-----HHHHHH-
Q psy5288 87 ANCYKKS------------NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDH-----YQHAAD- 148 (186)
Q Consensus 87 ~~~y~~~------------~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~-----y~kA~~- 148 (186)
.+..... ++.--+.++-+|.+....+-+.+..-.|+-.+-.++-.. |..+--... -++.-.
T Consensus 1010 Ie~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfec-g~l~~L~~fpfigl~~eve~~ 1088 (1480)
T KOG4521|consen 1010 IENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFEC-GELEALATFPFIGLEQEVEDF 1088 (1480)
T ss_pred HHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc-cchHHHhhCCccchHHHHHHH
Confidence 3222111 222334566667666666666666666666666665543 443322111 122222
Q ss_pred HHhc--cCChHHHHHHHHHHHHHHHhccCHHHHHHH
Q psy5288 149 CYAG--EENKSSANKCLIKIANYSALTDHLDKAIKL 182 (186)
Q Consensus 149 l~~~--~~~~~~~~~~~~~la~~y~~~g~~~~A~~~ 182 (186)
+.+. ...+.....+|.-|=-.+...+||.+|.-+
T Consensus 1089 l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1089 LRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 1111 112223335666566667788888888654
No 386
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=64.78 E-value=42 Score=22.88 Aligned_cols=88 Identities=15% Similarity=0.237 Sum_probs=55.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHHHhccCCh
Q psy5288 88 NCYKKSNPAEAIKAIERAVEIHTDMGRF----IMVAKHHENIAEIYEKELEDQE-------KAIDHYQHAADCYAGEENK 156 (186)
Q Consensus 88 ~~y~~~~~~~A~~~~~~Al~i~~~~~~~----~~~a~~~~~lg~~y~~~lg~~~-------~Ai~~y~kA~~l~~~~~~~ 156 (186)
.++.+.++.+|++..+..+..+....+. ...+.++..+|... .+.+ -++++|.++..+.+.
T Consensus 5 ~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~t----en~d~k~~yLl~sve~~s~a~~Lsp~---- 76 (111)
T PF04781_consen 5 DYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKT----ENPDVKFRYLLGSVECFSRAVELSPD---- 76 (111)
T ss_pred HHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhc----cCchHHHHHHHHhHHHHHHHhccChh----
Confidence 4556668889999988887777666542 34455555565553 3333 345555555555432
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 157 SSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 157 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+..+..+|.-+.....|+++..--++
T Consensus 77 --~A~~L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 77 --SAHSLFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred --HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 357788888877777777777765443
No 387
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=64.70 E-value=1e+02 Score=27.23 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=15.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q psy5288 124 NIAEIYEKELEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 124 ~lg~~y~~~lg~~~~Ai~~y~kA~~l~~ 151 (186)
.|+..|+. ++.++++.+|.+|+.-+-
T Consensus 137 eLa~~yEk--ik~sk~a~~f~Ka~yrfI 162 (711)
T COG1747 137 ELADKYEK--IKKSKAAEFFGKALYRFI 162 (711)
T ss_pred HHHHHHHH--hchhhHHHHHHHHHHHhc
Confidence 45555554 566666777666665543
No 388
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=63.96 E-value=86 Score=26.21 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=66.9
Q ss_pred HHHHHHcCChhHH-HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH---hcCCHHHHHH
Q psy5288 67 GTLHLKNNNKHDA-GLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK---ELEDQEKAID 141 (186)
Q Consensus 67 ~~~~~~~~~~~~a-a~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~---~lg~~~~Ai~ 141 (186)
..+.++++++... .....++--+|+.. +++.-++..+..-.+ .... ......+....|.++.. . |+.++|+.
T Consensus 127 ~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~-~~~~~~i~~~yafALnRrn~~-gdre~Al~ 203 (374)
T PF13281_consen 127 RRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD-VANQHNIKFQYAFALNRRNKP-GDREKALQ 203 (374)
T ss_pred HHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc-hhcchHHHHHHHHHHhhcccC-CCHHHHHH
Confidence 3455567766532 44555666778776 777666655543333 1111 22233355566777665 6 99999999
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHh---------ccCHHHHHHHHHh
Q psy5288 142 HYQHAADCYAGEENKSSANKCLIKIANYSAL---------TDHLDKAIKLYEQ 185 (186)
Q Consensus 142 ~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~---------~g~~~~A~~~~~~ 185 (186)
.+..++.--... ..+++.-+|.+|-. ....++|+..|.+
T Consensus 204 il~~~l~~~~~~-----~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~k 251 (374)
T PF13281_consen 204 ILLPVLESDENP-----DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRK 251 (374)
T ss_pred HHHHHHhccCCC-----ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHH
Confidence 999985543221 13567777887732 2357889988875
No 389
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.65 E-value=94 Score=25.89 Aligned_cols=98 Identities=9% Similarity=0.089 Sum_probs=52.2
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHH---------------
Q psy5288 50 FKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK---SNPAEAIKAIERAVEIHTD--------------- 111 (186)
Q Consensus 50 ~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~---~~~~~A~~~~~~Al~i~~~--------------- 111 (186)
+.+.++|..|.+.+.....- +..... ...+..+...|.. .++.+|.+++++.+.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r---l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 216 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR---LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVL 216 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh---CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Confidence 33567777777776665542 211111 3445555555543 2677777776655543211
Q ss_pred --c----CChhHHHH-----HHHHHHHHHH------HhcCCHHHHHHHHHHHHHHHhc
Q psy5288 112 --M----GRFIMVAK-----HHENIAEIYE------KELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 112 --~----~~~~~~a~-----~~~~lg~~y~------~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
. +....... ++.-++.++. .+ |+|+.|+..+-++++++..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~-gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 217 KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQ-GRYDDAVARLYRALELLAQ 273 (379)
T ss_pred HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence 0 00000000 2333344432 24 8999999999999998653
No 390
>KOG2908|consensus
Probab=61.37 E-value=93 Score=25.75 Aligned_cols=98 Identities=10% Similarity=0.023 Sum_probs=69.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh-hHHHHHHHHHH
Q psy5288 49 LFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF-IMVAKHHENIA 126 (186)
Q Consensus 49 ~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~-~~~a~~~~~lg 126 (186)
+.+..++.++|+++.++..+-.+..+.|+.........+.++... +..++.+.....-.+.-...+. ..+-.-+..++
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ls 163 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLS 163 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHH
Confidence 456677999999999999998888888877788888889998866 7788877777776666555443 33555566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Q psy5288 127 EIYEKELEDQEKAIDHYQHAADC 149 (186)
Q Consensus 127 ~~y~~~lg~~~~Ai~~y~kA~~l 149 (186)
.-|....|++... |..++.+
T Consensus 164 sqYyk~~~d~a~y---Yr~~L~Y 183 (380)
T KOG2908|consen 164 SQYYKKIGDFASY---YRHALLY 183 (380)
T ss_pred HHHHHHHHhHHHH---HHHHHHH
Confidence 6655545776654 4444443
No 391
>KOG2114|consensus
Probab=60.85 E-value=1.4e+02 Score=27.74 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.4
Q ss_pred ccCCCCHHHHHHHHHHHH
Q psy5288 30 FTGGNKTDEAIDLYVRAG 47 (186)
Q Consensus 30 ~~~~~~~~~A~~~y~~ag 47 (186)
+|++|++++|...|.+..
T Consensus 378 Ly~Kgdf~~A~~qYI~tI 395 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETI 395 (933)
T ss_pred HHhcCCHHHHHHHHHHHc
Confidence 347899999999999984
No 392
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=60.13 E-value=20 Score=28.01 Aligned_cols=13 Identities=23% Similarity=0.202 Sum_probs=6.5
Q ss_pred HhHHHHHHHHHHh
Q psy5288 6 QKARQLVAEAEKK 18 (186)
Q Consensus 6 ~~~~~~~~~a~~~ 18 (186)
+-+.+++.+|-..
T Consensus 12 ~aaaely~qal~l 24 (287)
T COG4976 12 EAAAELYNQALEL 24 (287)
T ss_pred HHHHHHHHHHhhc
Confidence 4445555555443
No 393
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=60.01 E-value=57 Score=22.86 Aligned_cols=64 Identities=11% Similarity=-0.011 Sum_probs=40.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChh---------HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKH---------DAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHT 110 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~---------~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~ 110 (186)
++.-...+++-.++-+|++|+.+...+.... -......+++..|+.. +.+-.+++++-|.+-..
T Consensus 8 Ad~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vl 81 (140)
T PF10952_consen 8 ADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVL 81 (140)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4444455666666677777766666543111 1234455889999887 88888999887776543
No 394
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=59.58 E-value=1.3e+02 Score=26.86 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=7.1
Q ss_pred CCHHHHHHHHHH
Q psy5288 134 EDQEKAIDHYQH 145 (186)
Q Consensus 134 g~~~~Ai~~y~k 145 (186)
|++++|++..++
T Consensus 519 g~~~~AL~~i~~ 530 (613)
T PF04097_consen 519 GQYEQALDIIEK 530 (613)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 677777766543
No 395
>KOG2041|consensus
Probab=59.53 E-value=1.5e+02 Score=27.40 Aligned_cols=27 Identities=15% Similarity=0.415 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy5288 42 LYVRAGNLFKLGKKWNDGGNAFLQAGT 68 (186)
Q Consensus 42 ~y~~ag~~~~~~g~~~~A~~~y~~a~~ 68 (186)
.+..+|..|-.+..+++|.++|.+...
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455666667777778888888865544
No 396
>KOG0985|consensus
Probab=59.45 E-value=1.7e+02 Score=28.24 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
+|..+|..-.+. |...+||+.|-+|=+ | ..|.+.-.+-.+.|+|++=+.++
T Consensus 1106 vWsqlakAQL~~-~~v~dAieSyikadD-------p----s~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQG-GLVKDAIESYIKADD-------P----SNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HHHHHHHHHHhc-CchHHHHHHHHhcCC-------c----HHHHHHHHHHHhcCcHHHHHHHH
Confidence 566666666653 667777766655422 1 23334444445555555555444
No 397
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=58.62 E-value=57 Score=22.97 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=28.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHHHH
Q psy5288 86 AANCYKKSNPAEAIKAIERAVEIHTDMG---RFIMVAKHHENIAEIYEK 131 (186)
Q Consensus 86 a~~~y~~~~~~~A~~~~~~Al~i~~~~~---~~~~~a~~~~~lg~~y~~ 131 (186)
+-.+....++.+..+...+|.+|+..+. |++....+..+|..+|..
T Consensus 38 A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL~~LY~y 86 (132)
T COG1516 38 AKEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEIAQNLDALYDY 86 (132)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHHHHHHHH
Confidence 3333344477777788888888876653 444445566666666654
No 398
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.44 E-value=1e+02 Score=25.18 Aligned_cols=124 Identities=12% Similarity=0.089 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC
Q psy5288 57 NDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELED 135 (186)
Q Consensus 57 ~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~ 135 (186)
++-++-+.+.++=.+..+-....+.++.++|+.|-.. +-+.+.+...+..+=....|-.-..--+-..+|.+|.++ .=
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~-~v 170 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR-KV 170 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH-HH
Confidence 3334444333333333333556678899999999876 888888888888776666666666666777888887664 22
Q ss_pred HHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 136 QEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 136 ~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
.+ +.++.+-.+.++.++....+.+-.--|.......+|.+|...+-
T Consensus 171 V~---e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~ 216 (412)
T COG5187 171 VE---ESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLS 216 (412)
T ss_pred HH---HHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 22 22333444444443322222222222333344556777766653
No 399
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=57.96 E-value=24 Score=27.35 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5288 43 YVRAGNLFKLGKKWNDGGNAFLQAG 67 (186)
Q Consensus 43 y~~ag~~~~~~g~~~~A~~~y~~a~ 67 (186)
|++.|.++...|+.-.|+-+|.+++
T Consensus 19 ~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 19 YNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccchhhhhccccchHHHHHHHHHHH
Confidence 3333444444444444444444444
No 400
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=57.83 E-value=1e+02 Score=25.12 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSAL 172 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~ 172 (186)
+-++-+.+.++=..+.+-.-..+.+..++|..|-+ .++-+.+.++..+.+.-....+.....--|-..+|.+|..
T Consensus 93 eki~Elde~i~~~eedngE~e~~ea~~n~aeyY~q-i~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 93 EKIEELDERIREKEEDNGETEGSEADRNIAEYYCQ-IMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Confidence 34444444444444444345667899999999998 6999999999988887666566555554566777777643
No 401
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=56.74 E-value=1.5e+02 Score=26.55 Aligned_cols=33 Identities=12% Similarity=0.036 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAG 67 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~ 67 (186)
.-+..-+....++......|++++|+.+|.-|.
T Consensus 409 ~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 409 DEDFLREIIEQAAREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp SSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 446666777777777777888887777765554
No 402
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=54.11 E-value=1.3e+02 Score=28.11 Aligned_cols=28 Identities=25% Similarity=0.152 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADC 149 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l 149 (186)
.+...+.+|+. .|++.+|+..|+.|+.+
T Consensus 937 ~~~~aa~aye~-~gK~~Ea~gay~sA~mw 964 (1243)
T COG5290 937 YHISAAKAYEV-EGKYIEAHGAYDSALMW 964 (1243)
T ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 45667777887 48888888888888775
No 403
>KOG3807|consensus
Probab=53.80 E-value=1.3e+02 Score=25.07 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 162 CLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 162 ~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+-..++.+-+++|+..+|++.|..
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 446789999999999999998864
No 404
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=53.75 E-value=1e+02 Score=23.82 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=52.8
Q ss_pred HHHHHHHHHHH-----HHcCChhHHHHHHHHHHHHHHHh--c-------CCHHHHHHHHHHHHHHHhcc--C-ChHHHHH
Q psy5288 99 IKAIERAVEIH-----TDMGRFIMVAKHHENIAEIYEKE--L-------EDQEKAIDHYQHAADCYAGE--E-NKSSANK 161 (186)
Q Consensus 99 ~~~~~~Al~i~-----~~~~~~~~~a~~~~~lg~~y~~~--l-------g~~~~Ai~~y~kA~~l~~~~--~-~~~~~~~ 161 (186)
...+...+.+. +...+......++-..|..|... . .-.++|...|++|.++.... . +|.. -.
T Consensus 91 ~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~r-Lg 169 (236)
T PF00244_consen 91 IDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLR-LG 169 (236)
T ss_dssp HHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHH-HH
T ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHH-HH
Confidence 34444455543 23345555666666778777541 0 12488999999999998872 2 3333 34
Q ss_pred HHHHHHHHH-HhccCHHHHHHHHHh
Q psy5288 162 CLIKIANYS-ALTDHLDKAIKLYEQ 185 (186)
Q Consensus 162 ~~~~la~~y-~~~g~~~~A~~~~~~ 185 (186)
...|.+..| .-.|+.++|++.-++
T Consensus 170 l~LN~svF~yei~~~~~~A~~ia~~ 194 (236)
T PF00244_consen 170 LALNYSVFYYEILNDPEKAIEIAKQ 194 (236)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Confidence 556666666 458999999987643
No 405
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=53.29 E-value=22 Score=24.61 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
.+.+|+.+..+ |++++|+.+|-+|+.++++
T Consensus 66 qV~lGE~L~~~-G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 66 QVQLGEQLLAQ-GDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHT-T-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHhCCC
Confidence 46688888886 9999999999999999875
No 406
>KOG1938|consensus
Probab=53.04 E-value=92 Score=29.26 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q psy5288 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 94 ~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~ 151 (186)
.+..|+++|.+|+..+...++---.--.++.++..|. +-..|.|-..+.+.+-...
T Consensus 331 qp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~~y~--l~~~D~a~~~f~~~i~~~~ 386 (960)
T KOG1938|consen 331 QPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILHVYL--LCQEDDADEEFSKLIADCM 386 (960)
T ss_pred ChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHHhhh--hhcchhHHHHHHHHHhhhh
Confidence 4678999999999999877765555556677777554 3456666666666655443
No 407
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=52.77 E-value=1.1e+02 Score=23.92 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHhcC-C----------HHHHHHHHHHHHHHHHH-cC--ChhHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy5288 76 KHDAGLCFVDAANCYKKS-N----------PAEAIKAIERAVEIHTD-MG--RFIMVAKHHENIAEIYEKELEDQEKAID 141 (186)
Q Consensus 76 ~~~aa~~~~~a~~~y~~~-~----------~~~A~~~~~~Al~i~~~-~~--~~~~~a~~~~~lg~~y~~~lg~~~~Ai~ 141 (186)
++....++.--|..|+-. + .++|..+|++|.++... +. +|-..+-+++---..|+- +++.++|+.
T Consensus 114 ~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI-~~~~~~A~~ 192 (244)
T smart00101 114 AESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEI-LNSPDRACN 192 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH-cCCHHHHHH
Confidence 334444444457777653 1 35899999999999765 42 333333333333344444 699999997
Q ss_pred HHHHHHHHH
Q psy5288 142 HYQHAADCY 150 (186)
Q Consensus 142 ~y~kA~~l~ 150 (186)
.-++|.+-.
T Consensus 193 lAk~afd~A 201 (244)
T smart00101 193 LAKQAFDEA 201 (244)
T ss_pred HHHHHHHHH
Confidence 766665543
No 408
>KOG2709|consensus
Probab=52.50 E-value=23 Score=30.03 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
.|...++.|.+|.. ++++++|+.+|++++.+..+
T Consensus 21 ~A~~~V~~gl~~dE-~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 21 GAYASVEQGLCYDE-VNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHHhhcchhh-hcCHHHHHHHHHHHHHHHHh
Confidence 34577889999999 59999999999999998765
No 409
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=52.43 E-value=1.1e+02 Score=23.89 Aligned_cols=85 Identities=9% Similarity=0.003 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHH-----HcCChhHHHHHHHHHHHHHHHh----cCC-----HHHHHHHHHHHHHHHhc---cCChHHHHH
Q psy5288 99 IKAIERAVEIHT-----DMGRFIMVAKHHENIAEIYEKE----LED-----QEKAIDHYQHAADCYAG---EENKSSANK 161 (186)
Q Consensus 99 ~~~~~~Al~i~~-----~~~~~~~~a~~~~~lg~~y~~~----lg~-----~~~Ai~~y~kA~~l~~~---~~~~~~~~~ 161 (186)
...+...+++.. ...+......++-..|..|... .|+ .++|...|++|.++... ..+|... .
T Consensus 93 ~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirL-g 171 (244)
T smart00101 93 SKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRL-G 171 (244)
T ss_pred HHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHH-H
Confidence 344445555442 2233455555666677776541 122 56899999999999765 2344333 3
Q ss_pred HHHHHHHHHHh-ccCHHHHHHHHH
Q psy5288 162 CLIKIANYSAL-TDHLDKAIKLYE 184 (186)
Q Consensus 162 ~~~~la~~y~~-~g~~~~A~~~~~ 184 (186)
...|.+..|.. +++.++|++.-.
T Consensus 172 LaLN~SVF~yEI~~~~~~A~~lAk 195 (244)
T smart00101 172 LALNFSVFYYEILNSPDRACNLAK 195 (244)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666544 689999987644
No 410
>KOG0687|consensus
Probab=52.30 E-value=1.3e+02 Score=24.80 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHh
Q psy5288 76 KHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKE---LEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 76 ~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~---lg~~~~Ai~~y~kA~~l~~ 151 (186)
......++.+.+..|-.. +-+.|++.+.+..+=-...|-.-.+-.+...+|..|.++ -...++|-..+++-.++-+
T Consensus 100 E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 100 ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER 179 (393)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh
Confidence 344566777888888766 889999999888877777787777777888899887653 0233444444444444433
Q ss_pred ccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 152 GEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 152 ~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
++. -.+|. |.-....-+|.+|...|-
T Consensus 180 rNR-----lKvY~--Gly~msvR~Fk~Aa~Lfl 205 (393)
T KOG0687|consen 180 RNR-----LKVYQ--GLYCMSVRNFKEAADLFL 205 (393)
T ss_pred hhh-----HHHHH--HHHHHHHHhHHHHHHHHH
Confidence 332 12222 333345568888887774
No 411
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=52.21 E-value=1.3e+02 Score=25.48 Aligned_cols=76 Identities=11% Similarity=0.023 Sum_probs=47.7
Q ss_pred HHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHHHH---cCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Q psy5288 37 DEAIDLYVRAG--NLFKLGKKWNDGGNAFLQAGTLHLK---NNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHT 110 (186)
Q Consensus 37 ~~A~~~y~~ag--~~~~~~g~~~~A~~~y~~a~~~~~~---~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~ 110 (186)
-.-.-+|--.| .++..+|||..|+....- +++.++ .+-+.-....+.-+|-+|..+ ++.+|++.|.+.+-...
T Consensus 117 ~~~LGYFSligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~ 195 (404)
T PF10255_consen 117 YKMLGYFSLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ 195 (404)
T ss_pred HHHhhHHHHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433 467789999999886532 122111 012333345666889999888 99999999999887654
Q ss_pred HcC
Q psy5288 111 DMG 113 (186)
Q Consensus 111 ~~~ 113 (186)
...
T Consensus 196 r~k 198 (404)
T PF10255_consen 196 RTK 198 (404)
T ss_pred Hhh
Confidence 443
No 412
>KOG0985|consensus
Probab=51.24 E-value=2.4e+02 Score=27.38 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 161 KCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 161 ~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
.-|.+||.+++.+|+|+.|...-.
T Consensus 1221 SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 456778888899999998887644
No 413
>KOG3192|consensus
Probab=50.14 E-value=98 Score=22.55 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy5288 94 NPAEAIKAIERAVEIHT-DMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAAD 148 (186)
Q Consensus 94 ~~~~A~~~~~~Al~i~~-~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~ 148 (186)
++.+|+......-.+.. ...+...+.++...+|.+++++ +|++|+.+-.+.--
T Consensus 103 e~~E~IS~~~De~~l~~lk~q~q~ri~q~~~qlge~~esk--~~~~Al~~i~rlrY 156 (168)
T KOG3192|consen 103 EYHEAISEMDDEEDLKQLKSQNQERIAQCKQQLGEAFESK--KYDEALKKILRLRY 156 (168)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHH
Confidence 34455544433333221 2234567888999999999984 79999877655433
No 414
>KOG0739|consensus
Probab=46.71 E-value=98 Score=25.46 Aligned_cols=37 Identities=32% Similarity=0.307 Sum_probs=29.1
Q ss_pred chHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHHHH
Q psy5288 3 DNEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNLFK 51 (186)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~ 51 (186)
|.-++|.+|+++|-..=+ .++|++|..+|.++..-|.
T Consensus 5 ~~l~kaI~lv~kA~~eD~------------a~nY~eA~~lY~~aleYF~ 41 (439)
T KOG0739|consen 5 SFLQKAIDLVKKAIDEDN------------AKNYEEALRLYQNALEYFL 41 (439)
T ss_pred hHHHHHHHHHHHHhhhcc------------hhchHHHHHHHHHHHHHHH
Confidence 556999999999976655 3599999999999876443
No 415
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=46.18 E-value=64 Score=21.75 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
+......|..|... |+.++|.-+|-+.+.++..
T Consensus 38 a~~l~~~A~~~~~e-gd~E~AYvl~~R~~~L~~k 70 (115)
T PF08969_consen 38 ANKLLREAEEYRQE-GDEEQAYVLYMRYLTLVEK 70 (115)
T ss_dssp HHHHHHHHHHHHHC-T-HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
Confidence 44556678888886 9999999999999999854
No 416
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=45.33 E-value=1.4e+02 Score=23.10 Aligned_cols=121 Identities=14% Similarity=-0.053 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHHH------------HhcCCHHHHHHHHHHHHHHHHHcCChh---HH---HHHHHHHHHHH-hcCC
Q psy5288 34 NKTDEAIDLYVRAGNLF------------KLGKKWNDGGNAFLQAGTLHLKNNNKH---DA---GLCFVDAANCY-KKSN 94 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~------------~~~g~~~~A~~~y~~a~~~~~~~~~~~---~a---a~~~~~a~~~y-~~~~ 94 (186)
|+|..=++-|...|..+ .-.|+++.|++....+++--..+.+.. .. +.-....+..- ....
T Consensus 65 P~Y~p~V~g~L~~g~~~qd~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~ 144 (230)
T PHA02537 65 PKYLPWVEGVLAAGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGE 144 (230)
T ss_pred cchHHHHHHHHHcCCCCCCCeeeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCC
Confidence 46666666666665432 247889999998888877644332211 11 12222222222 1121
Q ss_pred HHHHHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHHHhccCCh
Q psy5288 95 PAEAIKAIERAVEIHTDMGRF-IMVAKHHENIAEIY---------EKELEDQEKAIDHYQHAADCYAGEENK 156 (186)
Q Consensus 95 ~~~A~~~~~~Al~i~~~~~~~-~~~a~~~~~lg~~y---------~~~lg~~~~Ai~~y~kA~~l~~~~~~~ 156 (186)
+-+ ..+.+....+-....-+ ...|..+--+|..+ .+ .+++..|+.++++|+.+.++.|..
T Consensus 145 ~~e-~~~~~~~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d-~~~l~~Al~~L~rA~~l~~k~GVK 214 (230)
T PHA02537 145 SVE-PYFLRVFLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGD-AETLQLALALLQRAFQLNDKCGVK 214 (230)
T ss_pred CCC-hHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccC-cccHHHHHHHHHHHHHhCCCCChH
Confidence 111 11233333333323322 45667778888877 34 378999999999999999988744
No 417
>KOG0890|consensus
Probab=44.39 E-value=4.1e+02 Score=28.08 Aligned_cols=107 Identities=11% Similarity=0.186 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHc---
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANC-YKKSNPAEAIKAIERAVEIHTDM--- 112 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~-y~~~~~~~A~~~~~~Al~i~~~~--- 112 (186)
.+..++|.+.+.+-+..|+++.|-.+..+|.+.. ....+.+-++. +.+.+...|+..+++.++.....
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~ 1738 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHT 1738 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccC
Confidence 3455555666666665666665555555544431 12222233333 34447889999999999776433
Q ss_pred --------CChhHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHhc
Q psy5288 113 --------GRFIMVAKHHENIAEIYEKELEDQ--EKAIDHYQHAADCYAG 152 (186)
Q Consensus 113 --------~~~~~~a~~~~~lg~~y~~~lg~~--~~Ai~~y~kA~~l~~~ 152 (186)
.+...-..+...++..... .++. +.-+.+|..+..++++
T Consensus 1739 ~~~~~p~~~n~~i~~~~~L~~~~~~~e-s~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1739 PYTDTPQSVNLLIFKKAKLKITKYLEE-SGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred CccccchhhhhhhhhhHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHccc
Confidence 1112222345555555555 3553 4566889999999885
No 418
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=43.66 E-value=1.9e+02 Score=23.99 Aligned_cols=17 Identities=12% Similarity=-0.136 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5288 56 WNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 56 ~~~A~~~y~~a~~~~~~ 72 (186)
...|..+|+.|+-+++-
T Consensus 139 lK~A~~~fq~AAG~F~~ 155 (361)
T cd09239 139 MKVACTHFQCAAWAFAY 155 (361)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677777777777664
No 419
>KOG1310|consensus
Probab=43.26 E-value=77 Score=28.01 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHc
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS----NPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~----~~~~A~~~~~~Al~i~~~~ 112 (186)
.+-++.|.+-|+-....+....|+..|.++..- ...+..+|.+=+.++.+. +.-.|++-+..|+++..-.
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~ 444 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQY------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI 444 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH
Confidence 355556666665555555677777777776653 233444555544455443 4556777777776654332
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q psy5288 113 GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 113 ~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~ 151 (186)
-..+..|+.++.. |+.+.+|+.+..-+-..++
T Consensus 445 ------~kah~~la~aL~e-l~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 445 ------QKAHFRLARALNE-LTRYLEALSCHWALQMSFP 476 (758)
T ss_pred ------HHHHHHHHHHHHH-HhhHHHhhhhHHHHhhcCc
Confidence 3367778888887 6999999988766655555
No 420
>KOG3024|consensus
Probab=43.15 E-value=1.8e+02 Score=23.54 Aligned_cols=111 Identities=16% Similarity=0.166 Sum_probs=78.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH--HHHHHHHhcCC--HHHHHHHHHHH
Q psy5288 30 FTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCF--VDAANCYKKSN--PAEAIKAIERA 105 (186)
Q Consensus 30 ~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~--~~a~~~y~~~~--~~~A~~~~~~A 105 (186)
.++...++.|++.....+..+.+.++...|++...-.++++.+. .-+.+.. .+++.+....+ ..+=..+.+.+
T Consensus 36 ~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka---~~ad~~~~~anl~~ll~e~~~~eper~~~v~ra 112 (312)
T KOG3024|consen 36 YTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKA---EVADSLLKVANLAELLGEADPSEPERKTFVRRA 112 (312)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHH---HhhHhHHHHHHHHHHHhhcCCCccHHHHHHHHH
Confidence 34445889999999999999988898889999888888887662 2222222 46666665552 23445567777
Q ss_pred HHHHHHc-CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy5288 106 VEIHTDM-GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQ 144 (186)
Q Consensus 106 l~i~~~~-~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~ 144 (186)
++-.... +-.-+-+..+..+|..+... +++.+|-.+|-
T Consensus 113 ikWS~~~~~~k~G~p~lH~~la~~l~~e-~~~~~a~~HFl 151 (312)
T KOG3024|consen 113 IKWSKEFGEGKYGHPELHALLADKLWTE-DNVEEARRHFL 151 (312)
T ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhc-ccHHHHHhHhh
Confidence 7777765 23334466888899998886 89999988873
No 421
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=42.83 E-value=40 Score=16.02 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q psy5288 134 EDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 134 g~~~~Ai~~y~kA~~l~~~ 152 (186)
|+.+.|...|++++..++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~ 19 (33)
T smart00386 1 GDIERARKIYERALEKFPK 19 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC
Confidence 4678899999999998773
No 422
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=42.52 E-value=2.5e+02 Score=25.04 Aligned_cols=110 Identities=8% Similarity=0.004 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC
Q psy5288 58 DGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS---NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELE 134 (186)
Q Consensus 58 ~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~---~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg 134 (186)
+-.+.-++.+-++...|....=--++-++|++=.-. .-..++..|.+|+...+.--+-...--+.. +|-.|..+ +
T Consensus 255 e~~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty-~gg~~yR~-~ 332 (618)
T PF05053_consen 255 ELAQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTY-LGGYYYRH-K 332 (618)
T ss_dssp HHHHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHH-HHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcccccee-hhhHHHHH-H
Confidence 334444555555555454333223334444443322 335677888888877766633223333333 44444444 8
Q ss_pred CHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Q psy5288 135 DQEKAIDHYQHAADCYAGEENKSSANKCLIKIANY 169 (186)
Q Consensus 135 ~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~ 169 (186)
+|.+|+.++-+|.+..+.-+....-..+|..+-++
T Consensus 333 ~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleI 367 (618)
T PF05053_consen 333 RYREALRSWAEAADVIRKYNYSREDEEIYKEFLEI 367 (618)
T ss_dssp -HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHH
Confidence 99999999999999887643222333455444433
No 423
>KOG0687|consensus
Probab=42.48 E-value=2e+02 Score=23.88 Aligned_cols=112 Identities=11% Similarity=0.098 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhH
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIM 117 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~ 117 (186)
+..+...+.+.-|...|+-+.|.+.+.+..+=...+|..-....+..++|-.|...++ --+..++|-.++.+-||++.
T Consensus 102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~l--V~~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDL--VTESIEKAKSLIEEGGDWER 179 (393)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHH--HHHHHHHHHHHHHhCCChhh
Confidence 4455566667778888899999998888877777788888888888889988876422 22455667777888888776
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
-...-.--|..-.. ..++.+|..+|-.++.-|..
T Consensus 180 rNRlKvY~Gly~ms-vR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 180 RNRLKVYQGLYCMS-VRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hhhHHHHHHHHHHH-HHhHHHHHHHHHHHcccccc
Confidence 66555545554444 36677777776666665554
No 424
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=42.35 E-value=1.9e+02 Score=23.75 Aligned_cols=18 Identities=6% Similarity=-0.088 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy5288 55 KWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 55 ~~~~A~~~y~~a~~~~~~ 72 (186)
....|..+|++|+-++.-
T Consensus 130 glK~A~~~fq~AAG~F~~ 147 (355)
T cd09241 130 GLKRACSYFQASAGCFEY 147 (355)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478888888888888774
No 425
>KOG0739|consensus
Probab=42.16 E-value=54 Score=26.90 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=14.7
Q ss_pred cCCHHHHHHHHHHHHHHHh
Q psy5288 133 LEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 133 lg~~~~Ai~~y~kA~~l~~ 151 (186)
.++|++|..+|+.|+++|-
T Consensus 23 a~nY~eA~~lY~~aleYF~ 41 (439)
T KOG0739|consen 23 AKNYEEALRLYQNALEYFL 41 (439)
T ss_pred hhchHHHHHHHHHHHHHHH
Confidence 4788888888888888764
No 426
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.06 E-value=1e+02 Score=23.18 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=17.7
Q ss_pred HHHHHHHHhccCHHHHHHHHHhC
Q psy5288 164 IKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 164 ~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
.....|+.+.|.|++|.++++++
T Consensus 115 ~~aV~VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 115 EQAVAVCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHHHHHHhcCchHHHHHHHHHH
Confidence 33445678999999999998863
No 427
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=41.72 E-value=2e+02 Score=23.64 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5288 56 WNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 56 ~~~A~~~y~~a~~~~~~ 72 (186)
...|..+|++|+-+++-
T Consensus 144 lK~A~~~fq~AAG~F~~ 160 (346)
T cd09240 144 LKLAAKLFQQAAGIFNH 160 (346)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57788888888887764
No 428
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=41.50 E-value=1.1e+02 Score=20.84 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=32.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy5288 46 AGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIE 103 (186)
Q Consensus 46 ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~ 103 (186)
.-..+...+.+...+.+.+....- + + .....+..+..+|.+.+..+.+.+++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~----~-~-~~~~~~~~li~ly~~~~~~~ll~~l~ 64 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKL----N-S-ENPALQTKLIELYAKYDPQKEIERLD 64 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHcc----C-c-cchhHHHHHHHHHHHHCHHHHHHHHH
Confidence 344555566677777766655542 2 2 34456777788887666677777666
No 429
>KOG2908|consensus
Probab=41.35 E-value=2.1e+02 Score=23.81 Aligned_cols=84 Identities=11% Similarity=0.081 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHH-
Q psy5288 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE-ENKSSANKCLIKIANYSA- 171 (186)
Q Consensus 94 ~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~-~~~~~~~~~~~~la~~y~- 171 (186)
+.++|+++.++..+-......++....+...+|+++.. .|+...+.+.....-....+. +.+...-..+..++.-|.
T Consensus 90 D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~-i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk 168 (380)
T KOG2908|consen 90 DKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLE-INDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYK 168 (380)
T ss_pred cHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHH
Confidence 78999999999999999998888999999999999998 599999999988877765542 333323334444444443
Q ss_pred hccCHHH
Q psy5288 172 LTDHLDK 178 (186)
Q Consensus 172 ~~g~~~~ 178 (186)
..|+|..
T Consensus 169 ~~~d~a~ 175 (380)
T KOG2908|consen 169 KIGDFAS 175 (380)
T ss_pred HHHhHHH
Confidence 3455543
No 430
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=41.17 E-value=3e+02 Score=25.52 Aligned_cols=131 Identities=14% Similarity=0.046 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHhcC------CHH-HHHHHHHHHHH
Q psy5288 36 TDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHL-KNNNKHDAGLCFVDAANCYKKS------NPA-EAIKAIERAVE 107 (186)
Q Consensus 36 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~-~~~~~~~aa~~~~~a~~~y~~~------~~~-~A~~~~~~Al~ 107 (186)
.+-+..+|.+++.+-...+--+=|-++|.+|..+|. .+.+......+..-+.....+. +++ -+-++...|.+
T Consensus 588 ~~lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~ii~tL~~~r~~~~Enyd~L~tk~t~yasK 667 (762)
T PF03635_consen 588 SELALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTLIIGTLQKTRSFSEENYDTLITKCTLYASK 667 (762)
T ss_dssp -HHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Confidence 355555555555554444433335555555555555 3444444333443333333322 111 12223333333
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Q psy5288 108 IHTDMGRFIMVAKHHENIAEIYEKE---------LEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYS 170 (186)
Q Consensus 108 i~~~~~~~~~~a~~~~~lg~~y~~~---------lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y 170 (186)
+.++ +.+...-...+.++... ..+-.+..++++||+++....-++......+..+-+-|
T Consensus 668 LLKK----~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~md~~~~~~LfveILn~y 735 (762)
T PF03635_consen 668 LLKK----PDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSCMDPSQSVQLFVEILNRY 735 (762)
T ss_dssp -SSH----HHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH
T ss_pred hcCc----HHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHH
Confidence 3222 22222233344444331 14788999999999999887655555556666655554
No 431
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=40.95 E-value=1.1e+02 Score=20.72 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 36 TDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 36 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
|+.++.....+.. ....|+++.+.....++.+|...
T Consensus 26 yd~ai~~l~~a~~-a~~~~~~~~~~~~l~ka~~Ii~~ 61 (122)
T PF02561_consen 26 YDGAIEFLKQAKE-AIEQGDIEEKNEALQKAQDIITE 61 (122)
T ss_dssp HHHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHH
Confidence 3444444444433 44566777777777777776553
No 432
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.46 E-value=39 Score=20.15 Aligned_cols=19 Identities=5% Similarity=-0.069 Sum_probs=14.2
Q ss_pred HHHHHhccCHHHHHHHHHh
Q psy5288 167 ANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 167 a~~y~~~g~~~~A~~~~~~ 185 (186)
-.-|..+|++++|.+|.++
T Consensus 30 I~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3446789999999999865
No 433
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.33 E-value=55 Score=22.59 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCH
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHL 176 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~ 176 (186)
.-...+++++..+.....+.. =.-+.++=..|... -+ .+.+.|+....- ..|.. -+..|...|.++...|++
T Consensus 44 ~L~~lLer~~~~f~~~~~Y~n-D~RylkiWi~ya~~-~~--~~~~if~~l~~~--~IG~~--~A~fY~~wA~~le~~~~~ 115 (126)
T PF08311_consen 44 GLLELLERCIRKFKDDERYKN-DERYLKIWIKYADL-SS--DPREIFKFLYSK--GIGTK--LALFYEEWAEFLEKRGNF 115 (126)
T ss_dssp HHHHHHHHHHHHHTTSGGGTT--HHHHHHHHHHHTT-BS--HHHHHHHHHHHH--TTSTT--BHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhhhHhhcC-CHHHHHHHHHHHHH-cc--CHHHHHHHHHHc--CccHH--HHHHHHHHHHHHHHcCCH
Confidence 345566677666654421110 01234444445543 22 666666655442 23322 246889999999999999
Q ss_pred HHHHHHHHh
Q psy5288 177 DKAIKLYEQ 185 (186)
Q Consensus 177 ~~A~~~~~~ 185 (186)
++|.++|++
T Consensus 116 ~~A~~I~~~ 124 (126)
T PF08311_consen 116 KKADEIYQL 124 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999975
No 434
>KOG1938|consensus
Probab=39.09 E-value=1.9e+02 Score=27.31 Aligned_cols=91 Identities=11% Similarity=-0.016 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHH-HHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 80 GLCFVDAANCYKKS-----NPAEAIKAIERAVEIH-TDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 80 a~~~~~a~~~y~~~-----~~~~A~~~~~~Al~i~-~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
...|.+++..+.+. ++..|+-.++.++-.. ++...+.+.+..-+-.|..|... +..-.|+.+|.+|+..+...
T Consensus 271 ~~lh~eaa~~~~r~~see~dl~~allleqaal~f~~tkp~m~~ktffHpVLal~r~s~a-nqp~ha~R~y~~ai~v~~~~ 349 (960)
T KOG1938|consen 271 LGLHKEAAEALARETSEEGDLLSALLLEQAALCFGSTKPPMPRKTFFHPVLALIRFSSA-NQPKHALRCYRQAIPVLKKP 349 (960)
T ss_pred HHHHHHHHHHHHHhhCcCchhhhHHHHHHHHHHhhcCCCCccchhhcceeehhhhcccC-CChhHHHHHHHHHhhhcCCC
Confidence 34455555555432 4667777766665544 24455666666677788888885 88999999999999999987
Q ss_pred CChHHHHHHHHHHHHHHH
Q psy5288 154 ENKSSANKCLIKIANYSA 171 (186)
Q Consensus 154 ~~~~~~~~~~~~la~~y~ 171 (186)
......-..+..++.+|.
T Consensus 350 ~ws~~edh~~f~i~~~y~ 367 (960)
T KOG1938|consen 350 TWSFAEDHLYFTILHVYL 367 (960)
T ss_pred CcchhHHhHHHhHHHhhh
Confidence 655555566677777553
No 435
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.99 E-value=54 Score=22.11 Aligned_cols=36 Identities=11% Similarity=0.298 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE 154 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~ 154 (186)
...++-.||.+|.+ .|+-|+|..-|+.--.+|++.+
T Consensus 71 pPG~HAhLGlLys~-~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 71 PPGYHAHLGLLYSN-SGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred CCcHHHHHHHHHhh-cCChHHHHHHHHHhhhhCccch
Confidence 34578889999999 5999999999999999999864
No 436
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=37.68 E-value=97 Score=21.42 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=16.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLH 70 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~ 70 (186)
|+.....|++++|+.+|-+|+.++
T Consensus 70 GE~L~~~G~~~~aa~hf~nAl~V~ 93 (121)
T PF02064_consen 70 GEQLLAQGDYEEAAEHFYNALKVC 93 (121)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC
Confidence 666666777777777777777764
No 437
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=37.66 E-value=87 Score=25.90 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=31.8
Q ss_pred HcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy5288 111 DMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADC 149 (186)
Q Consensus 111 ~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l 149 (186)
..-+....+.+|.-++.+.... |..+..|..|++|+..
T Consensus 132 ~IP~A~K~aKYWIC~Arl~~~~-~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 132 NIPDAKKLAKYWICLARLEPRT-GPIEDVIAIYEEAILA 169 (353)
T ss_pred cCchHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHc
Confidence 3344556688999999999985 9999999999999986
No 438
>KOG0276|consensus
Probab=37.64 E-value=1.2e+02 Score=27.21 Aligned_cols=25 Identities=8% Similarity=0.021 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 161 KCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 161 ~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.=|..||+.....|++..|.++|.+
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHh
Confidence 5678899999999999999999976
No 439
>KOG2610|consensus
Probab=37.42 E-value=2.5e+02 Score=23.56 Aligned_cols=59 Identities=10% Similarity=-0.102 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 120 KHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+.-..+..++. .|-|++|-+.-.+|+.|.+... + ...-++.|+.-.|+++++.+...+
T Consensus 176 Yv~GmyaFgL~E-~g~y~dAEk~A~ralqiN~~D~---W---a~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 176 YVHGMYAFGLEE-CGIYDDAEKQADRALQINRFDC---W---ASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHHhhHHH-hccchhHHHHHHhhccCCCcch---H---HHHHHHHHHHhcchhhhHHHHHHh
Confidence 344556777788 5999999999999999966432 2 224567788888999999887653
No 440
>PF09094 DUF1925: Domain of unknown function (DUF1925); InterPro: IPR015178 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). It is adjacent to the C-terminal domain (see IPR015179 from INTERPRO). The exact function of this domain is, as yet, unknown. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=36.47 E-value=47 Score=21.19 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=12.4
Q ss_pred CccccccCCCCHHHHHHHHHHHHHHHHhcC
Q psy5288 25 GFFSQFTGGNKTDEAIDLYVRAGNLFKLGK 54 (186)
Q Consensus 25 ~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g 54 (186)
|||.+||. +|.|+-.++.+...+.....
T Consensus 1 G~wrNFlv--kYpEsN~mhkRMl~vs~~~~ 28 (80)
T PF09094_consen 1 GFWRNFLV--KYPESNRMHKRMLYVSSKVR 28 (80)
T ss_dssp --GGGHHH--H-HHHHHHHHHHHHHHHHHT
T ss_pred Ccchhhhh--cCcchhHHHHHHHHHHHHHH
Confidence 34444444 45555555555554444433
No 441
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=36.08 E-value=12 Score=32.74 Aligned_cols=56 Identities=13% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHH
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIK 181 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~ 181 (186)
..-.+.+...+ |++++|+..+.. ..... . ........+.-.+.+|...|++-+|..
T Consensus 64 ~Ll~A~lal~~-~~~~~Al~~L~~-~~~~~-l-~~~~~~~~~~l~A~a~~~~~~~l~Aa~ 119 (536)
T PF04348_consen 64 QLLRARLALAQ-GDPEQALSLLNA-QDLWQ-L-PPEQQARYHQLRAQAYEQQGDPLAAAR 119 (536)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHhc-CCHHHHHHHhcc-CCccc-C-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 33344444443 556666655543 11100 0 011122344445555555555555544
No 442
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=35.90 E-value=1e+02 Score=20.73 Aligned_cols=39 Identities=10% Similarity=0.028 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKN 73 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~ 73 (186)
.|-.++.-..+.+..|...|+.+.|--+|.+.+.+..++
T Consensus 33 ~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki 71 (115)
T PF08969_consen 33 RYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKI 71 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 455666666666778888888888888888888887644
No 443
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=35.88 E-value=1.4e+02 Score=20.58 Aligned_cols=50 Identities=10% Similarity=0.006 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 134 EDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 134 g~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
|+.++|+++.++-..-..+.+....-.-...++.+ +++.|+..+|+++.+
T Consensus 15 g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fie-ll~~~~~~~Ai~y~r 64 (145)
T PF10607_consen 15 GDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIE-LLREGDIMEAIEYAR 64 (145)
T ss_pred CCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 88888888887765554433221111111122222 233678888887754
No 444
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=35.32 E-value=2.4e+02 Score=22.72 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=45.6
Q ss_pred HHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q psy5288 10 QLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANC 89 (186)
Q Consensus 10 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~ 89 (186)
+.+++..+.++ ...||||. |+ +... +.-++.+...-.+++++++-....-+.....|=... ...+.-+..+
T Consensus 36 ~~~~~~~~~IK-~~t~~fS~-lr-~~~~-----~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~-~y~~laA~~i 106 (297)
T PF13170_consen 36 ERFKEISKYIK-KNTGWFSP-LR-GNHR-----FILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRS-EYLYLAALII 106 (297)
T ss_pred HHHHHHHHHHH-Hccccccc-cc-ccHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCcc-ChHHHHHHHH
Confidence 45566777777 55899994 45 3332 223333333333476665544444444333321111 1333333333
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHc
Q psy5288 90 YKKSNPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 90 y~~~~~~~A~~~~~~Al~i~~~~ 112 (186)
....+..+--...+++..|+..+
T Consensus 107 ~~~~~~~~~~~~~~ra~~iy~~m 129 (297)
T PF13170_consen 107 LEEEEKEDYDEIIQRAKEIYKEM 129 (297)
T ss_pred HHhcccccHHHHHHHHHHHHHHH
Confidence 33333344445566666666544
No 445
>KOG2066|consensus
Probab=35.00 E-value=3.8e+02 Score=24.95 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q psy5288 44 VRAGNLFKLGKKWNDGGNAFLQAGT 68 (186)
Q Consensus 44 ~~ag~~~~~~g~~~~A~~~y~~a~~ 68 (186)
.-++..|...++|++|...|.++.+
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhccC
Confidence 3367788899999999888865443
No 446
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=34.08 E-value=1.2e+02 Score=24.64 Aligned_cols=31 Identities=10% Similarity=0.022 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHhC
Q psy5288 156 KSSANKCLIKIANYSALTD-----HLDKAIKLYEQL 186 (186)
Q Consensus 156 ~~~~~~~~~~la~~y~~~g-----~~~~A~~~~~~~ 186 (186)
+.+..-++.-++.+|...+ ++++|+.+.+.+
T Consensus 172 r~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~v 207 (359)
T cd08977 172 RAWKKAARALLARVYLYLANYTAADYAEALTAAEKS 207 (359)
T ss_pred hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3455567788899999998 899999887653
No 447
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.05 E-value=48 Score=22.30 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 162 CLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 162 ~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
-+..++..|...|.+.+|++...+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~ 64 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKK 64 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHH
Confidence 345555666666666666665543
No 448
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=33.90 E-value=2.1e+02 Score=22.77 Aligned_cols=64 Identities=11% Similarity=-0.014 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 114 RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 114 ~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
+.........++=..+... ++++.|..+-++.+.+.++.. .-+..-|.+|.++|.+.-|++-++
T Consensus 176 ~~~il~rll~~lk~~~~~e-~~~~~al~~~~r~l~l~P~dp------~eirDrGliY~ql~c~~vAl~dl~ 239 (269)
T COG2912 176 NREILSRLLRNLKAALLRE-LQWELALRVAERLLDLNPEDP------YEIRDRGLIYAQLGCYHVALEDLS 239 (269)
T ss_pred HHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHhhCCCCh------hhccCcHHHHHhcCCchhhHHHHH
Confidence 3344555666666667775 899999999999999977642 233566889999999999988765
No 449
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=33.58 E-value=2.7e+02 Score=22.82 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=14.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTL 69 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~ 69 (186)
+..|...|.+.+|+++.++++.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltl 308 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTL 308 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhc
Confidence 34466666666666666666655
No 450
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=33.41 E-value=3.3e+02 Score=23.76 Aligned_cols=132 Identities=13% Similarity=0.094 Sum_probs=63.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHHHcCChhHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAV-EIHTDMGRFIMVAKHHENI 125 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al-~i~~~~~~~~~~a~~~~~l 125 (186)
|-+.+.++++++|-..|.|..+--....-....-....++...|.. +.+...+.-+ ++.+..|+. +-...-.
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl----~nld~Me~~l~~l~~~~~~s---~~l~LF~ 85 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL----NNLDLMEKQLMELRQQFGKS---AYLPLFK 85 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH----hhHHHHHHHHHHHHHhcCCc---hHHHHHH
Confidence 5567777888888777766554321110000000111122223322 2222222222 223344421 2233344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHH-------HHHH--HHHHHHHHhccCHHHHHHHHHhC
Q psy5288 126 AEIYEKELEDQEKAIDHYQHAADCYAGEENKSSA-------NKCL--IKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 126 g~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~-------~~~~--~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
|.+...+ ++|.+|++.+-.--.-......+... ...+ ...|.+++.+|.|.++...++++
T Consensus 86 ~L~~Y~~-k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 86 ALVAYKQ-KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred HHHHHHh-hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 4444444 89999998764433322221111110 1111 44578889999999999988764
No 451
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=33.28 E-value=1.6e+02 Score=20.10 Aligned_cols=110 Identities=18% Similarity=0.082 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHH------HHH
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIE------RAV 106 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~------~Al 106 (186)
+.....+.++...-. .+. .-...+...+.++-+.+ +......+.+ .... +++.|++.++ .++
T Consensus 21 ~~~~~l~~yLe~~~~----~~~--~~~~~~~~li~ly~~~~-~~~ll~~l~~----~~~~yd~~~~~~~c~~~~l~~~~~ 89 (140)
T smart00299 21 NLLEELIPYLESALK----LNS--ENPALQTKLIELYAKYD-PQKEIERLDN----KSNHYDIEKVGKLCEKAKLYEEAV 89 (140)
T ss_pred CcHHHHHHHHHHHHc----cCc--cchhHHHHHHHHHHHHC-HHHHHHHHHh----ccccCCHHHHHHHHHHcCcHHHHH
Confidence 455666666655421 121 23345566666665442 2222233321 0111 5566655443 344
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh
Q psy5288 107 EIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSAL 172 (186)
Q Consensus 107 ~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~ 172 (186)
-++...|....+..+. ... +++++.|+++..+ .++ ...|..++..+..
T Consensus 90 ~l~~k~~~~~~Al~~~------l~~-~~d~~~a~~~~~~-------~~~----~~lw~~~~~~~l~ 137 (140)
T smart00299 90 ELYKKDGNFKDAIVTL------IEH-LGNYEKAIEYFVK-------QNN----PELWAEVLKALLD 137 (140)
T ss_pred HHHHhhcCHHHHHHHH------HHc-ccCHHHHHHHHHh-------CCC----HHHHHHHHHHHHc
Confidence 4444445444332221 112 3455555555443 222 2567666665543
No 452
>KOG1998|consensus
Probab=33.24 E-value=2.9e+02 Score=27.73 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHH
Q psy5288 80 GLCFVDAANCYKKS-NPAEAIKAIERAVEIHTD-MGRFIMVAKHHENIAEIYEK 131 (186)
Q Consensus 80 a~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~-~~~~~~~a~~~~~lg~~y~~ 131 (186)
-..|.+++..+.+. .+++|+-.|+.+...|.. .=++...+..+...|..|.+
T Consensus 1117 E~L~~e~~~~F~kGk~wE~ai~l~keL~~~Yen~~~Dy~~Ls~~~~~~A~~y~~ 1170 (1548)
T KOG1998|consen 1117 EYLYEEIIHYFDKGKMWEKAIALCKELAEQYENIIFDYNKLSELLIQIAQFYTN 1170 (1548)
T ss_pred HHHHHHhhhccccccChhhhchHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence 35566666666666 778888888888877766 34666666666666666654
No 453
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.09 E-value=2.7e+02 Score=22.63 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHH
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKA 179 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A 179 (186)
.-..+|..+... |+++.|.+.+-.-+.......+ ......+-+++...|.-+.+
T Consensus 238 aa~~lA~~~~~~-g~~e~Ale~Ll~~l~~d~~~~d----~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 238 AALALADQLHLV-GRNEAALEHLLALLRRDRGFED----GEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhcccccC----cHHHHHHHHHHHhcCCCCHH
Confidence 457788999886 9999999888666665433222 13444455566666643333
No 454
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=32.78 E-value=74 Score=22.87 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Q psy5288 122 HENIAEIYEKELE-DQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 122 ~~~lg~~y~~~lg-~~~~Ai~~y~kA~~l~~~ 152 (186)
.+.+|+.+..+ | +.+++..+|-+|+.+++.
T Consensus 93 eV~~GE~L~~~-g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 93 EVQLGEELMAQ-GTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHHhCCC
Confidence 36788888886 7 999999999999999875
No 455
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.53 E-value=2.4e+02 Score=22.00 Aligned_cols=31 Identities=6% Similarity=-0.011 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~ 151 (186)
...-+|.+++..+|+-......+++...+.+
T Consensus 201 ~llylg~vLey~lgnkk~ke~rreql~rik~ 231 (267)
T COG1655 201 ALLYLGNVLEYSLGNKKLKEMRREQLDRIKE 231 (267)
T ss_pred eeehhHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 4555777777668998888888888877755
No 456
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=32.02 E-value=2e+02 Score=20.94 Aligned_cols=50 Identities=6% Similarity=-0.189 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCH
Q psy5288 120 KHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHL 176 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~ 176 (186)
....--|.++..+ |++++|+..+....+--+ +. ..+---++-++..+||.
T Consensus 45 e~~~~~~~l~i~r-~~w~dA~rlLr~l~~~~~--~~----p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 45 ELDLFDGWLHIVR-GDWDDALRLLRELEERAP--GF----PYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHhccCC--CC----hHHHHHHHHHHHHcCCh
Confidence 3445566667765 777777777776433211 11 12333445566655553
No 457
>KOG3364|consensus
Probab=31.94 E-value=1.9e+02 Score=20.68 Aligned_cols=66 Identities=12% Similarity=0.013 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 82 CFVDAANCYKKS----NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 82 ~~~~a~~~y~~~----~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
+..+++-+.... +..+.+..++..++ ...+...-.|..-|+.-+.. +++|++++.+..-.++.-++
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYR-LKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHH-HhhHHHHHHHHHHHHhhCCC
Confidence 334555554433 55677887776554 34455556677778888887 79999999999988886443
No 458
>KOG0889|consensus
Probab=31.23 E-value=7.8e+02 Score=27.45 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHH--------------HHHHHHHcC----Ch
Q psy5288 56 WNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS--NPAEAIKAIER--------------AVEIHTDMG----RF 115 (186)
Q Consensus 56 ~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~--~~~~A~~~~~~--------------Al~i~~~~~----~~ 115 (186)
+.+-++.-.+.+.+.++.|-+. .+...+..+|... +.++|..-+++ ++++....+ ..
T Consensus 2732 yhe~A~~in~fakvArkh~l~~---vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~ 2808 (3550)
T KOG0889|consen 2732 YHELAWAINRFAKVARKHGLPD---VCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSD 2808 (3550)
T ss_pred HHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhh
Confidence 3444555566666666655553 4445566666543 44444333322 233332222 12
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
+..|..+..-|..... +|+.++|-..|..|+.+....
T Consensus 2809 ~q~aeff~lkG~f~~k-L~~~eeAn~~fs~AvQi~~~l 2845 (3550)
T KOG0889|consen 2809 RQKAEFFTLKGMFLEK-LGKFEEANKAFSAAVQIDDGL 2845 (3550)
T ss_pred HHHHHHHHhhhHHHHH-hcCcchhHHHHHHHHHHHhhh
Confidence 5667777888888888 799999999999999997653
No 459
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=31.12 E-value=2.3e+02 Score=23.28 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHcCC-----------------hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 96 AEAIKAIERAVEIHTDMGR-----------------FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 96 ~~A~~~~~~Al~i~~~~~~-----------------~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
-++.++|++|.......+. ..-.+..+...|...... +++-+||.+++.|....++.
T Consensus 213 ~~~~~~y~~A~~~l~~~~~~~~~i~~~~~~~l~~k~~~~~A~A~~~~a~~~~~~-~k~GeaIa~L~~A~~~l~~~ 286 (346)
T cd09247 213 YGATQFLEEAKNVLRSLATDLKDLDPRFLRFISSCIALHEARSQLYLARRLKEA-GHIGVAVGVLREALRNLKKK 286 (346)
T ss_pred HHHHHHHHHHHHHHHccCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHh
Confidence 4777888888888765432 011233445566666664 89999999999999976543
No 460
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=31.09 E-value=3.1e+02 Score=22.85 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHhcc----C---ChHHHHHHHHH
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK----ELEDQEKAIDHYQHAADCYAGE----E---NKSSANKCLIK 165 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~----~lg~~~~Ai~~y~kA~~l~~~~----~---~~~~~~~~~~~ 165 (186)
.+.+++++|.+.+...|....-..+...++.+|.. . .+.+.-+...++=+++.+.. + ....-...+..
T Consensus 149 ~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE-~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~~~~rql~fE 227 (371)
T PF12309_consen 149 NGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFE-EDPDRQIKMHKRRADLLEPLLKELNPQYYLNLCRQLWFE 227 (371)
T ss_pred HHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34556677777777778877777788888888765 2 67788888888777776642 1 11222357788
Q ss_pred HHHHHH
Q psy5288 166 IANYSA 171 (186)
Q Consensus 166 la~~y~ 171 (186)
+|.+|.
T Consensus 228 lae~~~ 233 (371)
T PF12309_consen 228 LAEIYS 233 (371)
T ss_pred HHHHHH
Confidence 888874
No 461
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=30.95 E-value=16 Score=31.92 Aligned_cols=108 Identities=13% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF 115 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~ 115 (186)
++...+...|+..+...|++..|.....+.-.- .+ ++........-.+.+.... ++++|+..+.. .... .+ ..
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~--~L-~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~-~~~~-~l-~~ 94 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQ--QL-SPSQQARYQLLRARLALAQGDPEQALSLLNA-QDLW-QL-PP 94 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccc--cC-ChHHHHHHHHHHHHHHHhcCCHHHHHHHhcc-CCcc-cC-CH
Confidence 556666777777777777777776655443311 11 1122222222223333322 55666665543 1110 01 12
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~ 151 (186)
.....++...+.+|... |++-.|+..+-+.-.+..
T Consensus 95 ~~~~~~~~l~A~a~~~~-~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 95 EQQARYHQLRAQAYEQQ-GDPLAAARERIALDPLLP 129 (536)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhcC
Confidence 23344555566666663 666666665555444443
No 462
>KOG0396|consensus
Probab=29.72 E-value=3.4e+02 Score=22.77 Aligned_cols=51 Identities=18% Similarity=0.088 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 134 EDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 134 g~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
|+.+.|+.|..+--...++.+.... .+....=.--+++.++|++|+.++++
T Consensus 166 ~~l~~~Lswc~ehk~~LkK~~S~lE-f~lRlQefIELi~~~~~~~Ai~~akk 216 (389)
T KOG0396|consen 166 GELEPALSWCKEHKVELKKEESSLE-FQLRLQEFIELIKVDNYDKAIAFAKK 216 (389)
T ss_pred cchHHHHHHHHHHHHHHHhccchhh-hHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6788888887776666665543222 23333333446677888888887754
No 463
>PRK05685 fliS flagellar protein FliS; Validated
Probab=29.35 E-value=2e+02 Score=19.99 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy5288 36 TDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHL 71 (186)
Q Consensus 36 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~ 71 (186)
|+.+++....+. .....|+++++.+...|+..|..
T Consensus 32 ydgai~~l~~A~-~ai~~~~~~~~~~~l~ka~~Ii~ 66 (132)
T PRK05685 32 YEGALSFLAQAK-LAIEQGDIEAKGEYLSKAINIIN 66 (132)
T ss_pred HHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHH
Confidence 444555444432 33345777777777777777655
No 464
>KOG0546|consensus
Probab=29.34 E-value=98 Score=25.71 Aligned_cols=111 Identities=14% Similarity=0.026 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--cCCh-----------hHHHHHHHHHHHHHhcC-CHHHHHH
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK--NNNK-----------HDAGLCFVDAANCYKKS-NPAEAIK 100 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~--~~~~-----------~~aa~~~~~a~~~y~~~-~~~~A~~ 100 (186)
.+.+..+.-.+.|+.....++++.|..=|.++...... -.+. ......+.+++.+-.+. .+..|+.
T Consensus 217 ~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~ 296 (372)
T KOG0546|consen 217 KALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARF 296 (372)
T ss_pred hhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCccee
Confidence 34445555555677788888888888888888776541 0001 11223333444444443 3344443
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 101 AIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 101 ~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
....+++ +.......+...+..+.. +.++++|++.++.+....+.
T Consensus 297 ~~~~~~~------~~~s~tka~~Rr~~~~~~-~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 297 RTNEALR------DERSKTKAHYRRGQAYKL-LKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred ccccccc------cChhhCcHHHHHHhHHHh-hhchhhhHHHHHHhhccCcc
Confidence 3333332 333445567778888887 58999999999999887654
No 465
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=29.17 E-value=4.4e+02 Score=23.89 Aligned_cols=100 Identities=20% Similarity=0.113 Sum_probs=0.0
Q ss_pred ccccccCCCCHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-C
Q psy5288 26 FFSQFTGGNKTDEAIDL----------YVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-N 94 (186)
Q Consensus 26 ~~~~~~~~~~~~~A~~~----------y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~ 94 (186)
||++=|..++|..|+-- |..|+-.|...|+..+|++ -|.++++|+.-|. -++++|... .
T Consensus 441 Fl~ndF~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLLag~l~dAv~------V~~~~l~D~qLAi----~i~Rl~e~d~g 510 (631)
T PF12234_consen 441 FLSNDFTEPRWRTAALKNAYALLSKHRYEYAAAFFLLAGSLKDAVN------VCLRQLNDPQLAI----AIARLYEGDNG 510 (631)
T ss_pred HHhhcCCChHHHHHHHHhHHHHHhcccHHHHHHHHHhcccHHHHHH------HHHHHccChhHHH----HHHHHHcCCCc
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5288 95 PAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHY 143 (186)
Q Consensus 95 ~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y 143 (186)
+.----.-+..+......||.... ..+|.. ||+++.|+..+
T Consensus 511 p~~~~ll~~~vLp~a~~~~d~wl~-------s~~~W~-L~~~~~ai~~L 551 (631)
T PF12234_consen 511 PVLKKLLEEHVLPEAIKEGDRWLA-------SWAFWM-LGDYDEAIRAL 551 (631)
T ss_pred hHHHHHHHHhhhccccccCCHHHH-------HHHHHh-cCCHHHHHHHH
No 466
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=28.42 E-value=26 Score=29.36 Aligned_cols=37 Identities=8% Similarity=0.079 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccC
Q psy5288 138 KAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDH 175 (186)
Q Consensus 138 ~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~ 175 (186)
.|+.+..+|+++.++.... ..+.+|+++|++++.+|+
T Consensus 329 ~a~~l~~~Al~yL~kA~d~-ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 329 IAQELIKKALEYLKKAQDE-DDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp THHHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcc-CChhHHHHHHHHHhhhhc
Confidence 3555566666665542100 112455555555554443
No 467
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.40 E-value=2e+02 Score=19.76 Aligned_cols=34 Identities=32% Similarity=0.240 Sum_probs=26.7
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5288 113 GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAA 147 (186)
Q Consensus 113 ~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~ 147 (186)
|--...|..|..-|..++.. |++++|-+.|++++
T Consensus 93 ~IG~~~A~fY~~wA~~le~~-~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 93 GIGTKLALFYEEWAEFLEKR-GNFKKADEIYQLGI 126 (126)
T ss_dssp TTSTTBHHHHHHHHHHHHHT-T-HHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHc-CCHHHHHHHHHhhC
Confidence 33345677889999999996 99999999998874
No 468
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=28.03 E-value=3.2e+02 Score=22.09 Aligned_cols=60 Identities=10% Similarity=-0.011 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC
Q psy5288 55 KWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGR 114 (186)
Q Consensus 55 ~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~ 114 (186)
....|.+...+|+-+...-|+....+-+-..-+.-|.-. +|+-|..||.+|..++.+..-
T Consensus 54 ~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L 114 (368)
T COG5091 54 TMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTL 114 (368)
T ss_pred ChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccc
Confidence 467788888888888888777766655544444444444 889999999999999876643
No 469
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=27.97 E-value=1.4e+02 Score=26.34 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy5288 100 KAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADC 149 (186)
Q Consensus 100 ~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l 149 (186)
+...+++++..+.|-...+..++..+|.-...+ |+|-.|+.++.+|.+.
T Consensus 406 ~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~-~~~g~AL~~~~ra~d~ 454 (566)
T PF07575_consen 406 DDAEKLLEICAELGLEDVAREICKILGQRLLKE-GRYGEALSWFIRAGDY 454 (566)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHCCCH
Confidence 345788889999998889999999999999987 9999999999998875
No 470
>KOG4563|consensus
Probab=27.64 E-value=3.7e+02 Score=22.62 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
+.+..++-...+|+.+...+++++|...|..|..+.-.
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~e 73 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDE 73 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHH
Confidence 45667777777888888888888888888777776543
No 471
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=26.89 E-value=3.6e+02 Score=22.19 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHc
Q psy5288 56 WNDGGNAFLQAGTLHLKN 73 (186)
Q Consensus 56 ~~~A~~~y~~a~~~~~~~ 73 (186)
..+|..+|++|+-+++-+
T Consensus 136 lK~A~~~fq~AAG~F~~l 153 (353)
T cd09246 136 IKQACHAFQAAAGAFAHL 153 (353)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677888888888777643
No 472
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=26.87 E-value=85 Score=23.84 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 160 NKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 160 ~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
+.+++..|+++..+|+...|++.+++|
T Consensus 133 aEvyL~~AEA~~~~g~~~~A~~~lN~v 159 (266)
T PF07980_consen 133 AEVYLIYAEALARLGNTAEALEYLNQV 159 (266)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 478899999999999999999988764
No 473
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=26.28 E-value=2.7e+02 Score=23.57 Aligned_cols=52 Identities=17% Similarity=0.365 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
.|+.++++|-. -..-..+...|.++..||++|... -.+=-.+|++|-++..+
T Consensus 336 ~Al~yL~kA~d-~ddPetWv~vAEa~I~LGNL~d~e---S~eQe~~Y~eAE~iL~k 387 (404)
T PF12753_consen 336 KALEYLKKAQD-EDDPETWVDVAEAMIDLGNLYDNE---SKEQEKAYKEAEKILKK 387 (404)
T ss_dssp HHHHHHHHHHH-S--TTHHHHHHHHHHHHHHH-SSH---HH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhc-cCChhHHHHHHHHHhhhhcccccc---hHHHHHHHHHHHHHHHH
Confidence 45555555433 001122346666667777765432 12223566777666554
No 474
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=25.92 E-value=3.8e+02 Score=22.18 Aligned_cols=17 Identities=12% Similarity=-0.027 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5288 56 WNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 56 ~~~A~~~y~~a~~~~~~ 72 (186)
..+|..+|++|+-+++-
T Consensus 137 ~K~A~~~fq~AAG~F~~ 153 (353)
T cd09243 137 AKDVHKSLRTAAGIFQF 153 (353)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777777777777663
No 475
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.34 E-value=3e+02 Score=20.78 Aligned_cols=127 Identities=18% Similarity=0.179 Sum_probs=65.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH----------------HHHHHHHhc-CCHHHHHHHHHHHHHHHHHc
Q psy5288 50 FKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCF----------------VDAANCYKK-SNPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 50 ~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~----------------~~a~~~y~~-~~~~~A~~~~~~Al~i~~~~ 112 (186)
|...+.-+++.+.|..++++.+..+ +..+...+ .+++.+... .+...|+.+|..+.. +.
T Consensus 49 yw~~s~as~sgd~flaAL~lA~~~k-~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~---dt 124 (221)
T COG4649 49 YWQTSRASKSGDAFLAALKLAQENK-TDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA---DT 124 (221)
T ss_pred hhcccccccchHHHHHHHHHHHcCC-chHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc---cC
Confidence 4444555566666666666655432 22222222 233333332 367788887765432 22
Q ss_pred CChhHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 113 GRFIMV-AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 113 ~~~~~~-a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
..|... -....+.+.++.+. |.|++...-.+... ..+++ .......-||..-.+-|++.+|...|..|
T Consensus 125 ~~P~~~rd~ARlraa~lLvD~-gsy~dV~srvepLa----~d~n~-mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 125 SIPQIGRDLARLRAAYLLVDN-GSYDDVSSRVEPLA----GDGNP-MRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred CCcchhhHHHHHHHHHHHhcc-ccHHHHHHHhhhcc----CCCCh-hHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 111111 12345566667775 77777654333211 12222 11234466777888889999998888754
No 476
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=24.46 E-value=2e+02 Score=18.45 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccC
Q psy5288 120 KHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDH 175 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~ 175 (186)
.....+|..+... |+++.|++.+...+.-.+..++. .....+-.++..+|.
T Consensus 23 ~ar~~lA~~~~~~-g~~e~Al~~Ll~~v~~dr~~~~~----~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 23 DARYALADALLAA-GDYEEALDQLLELVRRDRDYEDD----AARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHT-T-HHHHHHHHHHHHCC-TTCCCC----HHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcccccc----HHHHHHHHHHHHcCC
Confidence 4677889999986 99999999998888876543322 222333445555554
No 477
>KOG2168|consensus
Probab=23.67 E-value=6.2e+02 Score=23.78 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy5288 36 TDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTL 69 (186)
Q Consensus 36 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~ 69 (186)
.+.--+.+.++|.-....|.|++|+..|..+.+.
T Consensus 618 ~~~~~~i~~~vA~~a~~~G~~~~sI~LY~lag~y 651 (835)
T KOG2168|consen 618 IEDLQKIILEVASEADEDGLFEDAILLYHLAGDY 651 (835)
T ss_pred hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Confidence 3556667777777777888888777777666553
No 478
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=23.54 E-value=3.9e+02 Score=21.42 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q psy5288 103 ERAVEIHTDMGRFIMVAKHHENIAEIYEKELE--DQEKAIDHYQHA 146 (186)
Q Consensus 103 ~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg--~~~~Ai~~y~kA 146 (186)
.+.++.+...|+...+-..|..+..+....+| --.++...|.++
T Consensus 191 ~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 191 LRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 34444555555555555555555555433221 234444555555
No 479
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=23.47 E-value=2.9e+02 Score=19.85 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=20.8
Q ss_pred hHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHH
Q psy5288 4 NEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAG 47 (186)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag 47 (186)
++.+....++.|.+.++ +|+...|.+.+..++
T Consensus 71 ~~~~~~~ai~~a~~~l~------------~g~~~~A~~~L~~~~ 102 (155)
T PF10938_consen 71 PTPEKKAAIKTANELLK------------KGDKQAAREILKLAG 102 (155)
T ss_dssp --HHHHHHHHHHHHHHH------------TT-HHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHh------------CCCHHHHHHHHHHhc
Confidence 34566677777777777 347788887777774
No 480
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=23.41 E-value=2.2e+02 Score=22.96 Aligned_cols=67 Identities=13% Similarity=0.041 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHhhcc-CCCCcccccc----CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Q psy5288 7 KARQLVAEAEKKISS-SSKGFFSQFT----GGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKN 73 (186)
Q Consensus 7 ~~~~~~~~a~~~~~~-~~~~~~~~~~----~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~ 73 (186)
=|+-++++|++.++. .+.++...+. .......|.++|..|+..|...++...|-+|-.+|-=+.-++
T Consensus 137 ia~~~e~~A~~~l~~l~~~~~~~~l~~~~~~~~~L~~am~~~~~AAe~ylk~~~~~~A~~c~~~a~LvaLQi 208 (296)
T PF14649_consen 137 IAELWEKRARQILKKLVSQPWEESLRDNPELKSELLEAMENFTDAAENYLKDNCLRLAQRCAAQAQLVALQI 208 (296)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 355567777766651 0111100000 123445777778888888888777777777776666554443
No 481
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=23.14 E-value=2.8e+02 Score=19.93 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=23.4
Q ss_pred CHHHHHHHHHH---HHHHHHhcC-CHHHHHHHHHHHHHHH
Q psy5288 35 KTDEAIDLYVR---AGNLFKLGK-KWNDGGNAFLQAGTLH 70 (186)
Q Consensus 35 ~~~~A~~~y~~---ag~~~~~~g-~~~~A~~~y~~a~~~~ 70 (186)
+.++--.+|.+ .|..+...| +.++++.+|-+|+.++
T Consensus 82 d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc 121 (148)
T TIGR00985 82 DPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVY 121 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC
Confidence 43444444433 366666777 8888888888888875
No 482
>KOG0889|consensus
Probab=22.79 E-value=5.4e+02 Score=28.50 Aligned_cols=80 Identities=14% Similarity=0.193 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC------C---HHHHHHHHHHHHH
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS------N---PAEAIKAIERAVE 107 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~------~---~~~A~~~~~~Al~ 107 (186)
+.+++.|..=|.+....|+.++|-..|..|..+...+ ..++.+.|...... + -..|+.||-+|+.
T Consensus 2809 ~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l------~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~ 2882 (3550)
T KOG0889|consen 2809 RQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGL------GKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAAR 2882 (3550)
T ss_pred HHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhc
Confidence 5677778888899999999999999999999986444 55566666544332 1 2578888888888
Q ss_pred HHHHcCChhHHHHHH
Q psy5288 108 IHTDMGRFIMVAKHH 122 (186)
Q Consensus 108 i~~~~~~~~~~a~~~ 122 (186)
.+...+.....+.++
T Consensus 2883 ~~~~skaRk~iakvL 2897 (3550)
T KOG0889|consen 2883 LYNSSKARKLIAKVL 2897 (3550)
T ss_pred cccchhhHHHHHHHH
Confidence 776665555554444
No 483
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=22.33 E-value=1.7e+02 Score=24.57 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHh
Q psy5288 116 IMVAKHHENIAEIYEKELED---------QEKAIDHYQHAADCYA 151 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~---------~~~Ai~~y~kA~~l~~ 151 (186)
-+.+.+++|+|.+|.. +|- ...|+.+|++|..+|.
T Consensus 103 FEKasVLFNigAL~Sq-laa~~~r~t~eGlK~A~~~FQ~AAG~F~ 146 (384)
T cd09248 103 FEKGSVLFNIGALHTQ-IGARQDRSCTEGTRRAIDAFQRAAGAFS 146 (384)
T ss_pred HHHHHHHHhHHHHHHH-HHhhccCCChHHHHHHHHHHHHHHHHHH
Confidence 3556688999999876 343 6889999999998875
No 484
>KOG4563|consensus
Probab=22.13 E-value=4.8e+02 Score=21.96 Aligned_cols=62 Identities=10% Similarity=0.000 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHHhccCHHHHH
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE--NKSSANKCLIKIANYSALTDHLDKAI 180 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~ 180 (186)
...-++..|+-..-+ ++++.|...|..|..+..+.- .+..-...+.--|.++..+++.....
T Consensus 40 ~~e~lv~~G~~~~~~-~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 40 TLEELVQAGRRALCN-NDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHhhhHHHhc-ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456677777775 999999999999999876531 22222345566677777776666544
No 485
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=22.09 E-value=2.9e+02 Score=19.45 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
+.+++.+..|- .....++++++.+...|+.+|...
T Consensus 29 eg~l~~l~~A~-~aie~~~i~~k~~~i~ka~~Ii~e 63 (132)
T COG1516 29 EGALKFLKRAK-EAIEQEDIEEKNESIDKAIDIITE 63 (132)
T ss_pred HHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHHH
Confidence 34444444332 333456677777777777776653
No 486
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=22.01 E-value=4.9e+02 Score=22.06 Aligned_cols=55 Identities=15% Similarity=0.029 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHcCCh-------------------hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 97 EAIKAIERAVEIHTDMGRF-------------------IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~-------------------~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
++.++|++|.......+.. .-.|..+..+|...... +++-+||.+++.|...+..
T Consensus 255 ~~~~~y~~A~~~l~~~~~~~~~~~i~~~~~~yl~~k~~~~~A~A~~~~g~d~~e~-~k~GeaIa~L~~A~~~L~~ 328 (413)
T cd09245 255 AASEHAESARALLSTPGSKRGSGEVSEELLRYLSDLRRVARALACKFLGIDAGEN-GKVGEAIGWLRAAKKELED 328 (413)
T ss_pred HHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhHhc-CCHHHHHHHHHHHHHHHHH
Confidence 5678888888776543221 12244556666666665 8999999999999986543
No 487
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=22.01 E-value=4.5e+02 Score=21.57 Aligned_cols=148 Identities=12% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHHhcCCHHHHHH-HHHH
Q psy5288 38 EAIDLYVRAGNLFKLGK---------KWNDGGNAFLQAGTLHLKNN---NKHDAGLCFVDAANCYKKSNPAEAIK-AIER 104 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g---------~~~~A~~~y~~a~~~~~~~~---~~~~aa~~~~~a~~~y~~~~~~~A~~-~~~~ 104 (186)
|-+..+.+.|.++...+ ....|..+|++|+-+++-+. .+......-.+...++..+-..+|-+ ++++
T Consensus 105 Eka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~~l~e~~~~~ps~Dl~~~~l~~L~~lmLAQAQE~~~~K 184 (348)
T cd09242 105 EKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQYINENFLHAPSVDLQQENVKFLVKLMLAQAQEIFLLK 184 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHH
Q psy5288 105 AVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDH----YQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAI 180 (186)
Q Consensus 105 Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~----y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~ 180 (186)
|+.--........++......+..|..-.......... ..+-...+-........+..+...|......+++.+|+
T Consensus 185 ai~~~~~~~k~sliaKLa~~~~~~Y~~a~~~l~~~~~~~~~~~~~~W~~~~~~K~~~f~A~A~y~~a~~~~~~~k~GeaI 264 (348)
T cd09242 185 LINGDDAQKKASLISKLASATANLYESCVEFLKEIQEKGISYGDPKWISLVQCKAHYYKSLAAYYHALALEAAGKYGEAI 264 (348)
T ss_pred HHhcCCcccchHHHHHHHHHHHHHHHHHHHHHhccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccHHHHH
Q ss_pred HHHHh
Q psy5288 181 KLYEQ 185 (186)
Q Consensus 181 ~~~~~ 185 (186)
..++.
T Consensus 265 a~L~~ 269 (348)
T cd09242 265 AYLTQ 269 (348)
T ss_pred HHHHH
No 488
>PRK10941 hypothetical protein; Provisional
Probab=21.99 E-value=4.1e+02 Score=21.07 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE 154 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~ 154 (186)
..+.++-.+|... +++.|+++.+..+.+..+.- .-+-.-|.+|.+ ||.+..|+.-++.-++..++..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp------~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDP------YEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCch
Confidence 4444555566555 88999999988887765542 134457888998 7999999999999999887643
No 489
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=21.57 E-value=4.2e+02 Score=21.42 Aligned_cols=57 Identities=18% Similarity=0.045 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHcCCh-----h-------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 96 AEAIKAIERAVEIHTDMGRF-----I-------------MVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 96 ~~A~~~~~~Al~i~~~~~~~-----~-------------~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
.++..+|+.|.+........ + -.+..+..+|..+... +++-+||.+++.|....+..
T Consensus 210 ~~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~-~~~G~aia~L~~A~~~~~~~ 284 (345)
T cd09034 210 CEAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEA-NKIGEAIARLQAALELLKES 284 (345)
T ss_pred HHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHHHH
Confidence 37778888888887654421 1 1333445566666664 78899999999888877653
No 490
>COG5453 Uncharacterized conserved protein [Function unknown]
Probab=21.39 E-value=31 Score=22.46 Aligned_cols=11 Identities=45% Similarity=0.957 Sum_probs=7.7
Q ss_pred CccccccCCCC
Q psy5288 25 GFFSQFTGGNK 35 (186)
Q Consensus 25 ~~~~~~~~~~~ 35 (186)
+|||++|++|.
T Consensus 2 sffsrlFG~g~ 12 (96)
T COG5453 2 SFFSRLFGGGS 12 (96)
T ss_pred cHHHHhhCCCC
Confidence 57777776665
No 491
>KOG4279|consensus
Probab=21.33 E-value=3.1e+02 Score=25.68 Aligned_cols=55 Identities=18% Similarity=0.080 Sum_probs=33.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHHH
Q psy5288 52 LGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS----------NPAEAIKAIERAVEIHTD 111 (186)
Q Consensus 52 ~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~----------~~~~A~~~~~~Al~i~~~ 111 (186)
+-|+-.+|++....+.+ +.|. -+...|.-.|.+|+.. ..+.|+++|++|.++-..
T Consensus 255 r~GDRakAL~~~l~lve---~eg~--vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~ 319 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVE---KEGP--VAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL 319 (1226)
T ss_pred CCccHHHHHHHHHHHHH---hcCC--CCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch
Confidence 34566666665444433 3332 2345566678888764 246899999999886443
No 492
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.03 E-value=4.1e+02 Score=20.78 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHhcCCH
Q psy5288 96 AEAIKAIERAVEIHTDMG-RFIMVAKHHENIAEIYEKELEDQ 136 (186)
Q Consensus 96 ~~A~~~~~~Al~i~~~~~-~~~~~a~~~~~lg~~y~~~lg~~ 136 (186)
.+|+..|.-|+-.+.-+. .....|.++.++|.+++. |++-
T Consensus 111 ~eaiary~Ls~L~Y~~lek~yskqaisaLkiAWlfrd-leke 151 (267)
T COG1655 111 NEAIARYKLSLLNYVSLEKHYSKQAISALKIAWLFRD-LEKE 151 (267)
T ss_pred HHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHH-Hhcc
Confidence 445554444444443332 223556666666666666 3443
No 493
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=20.98 E-value=3.4e+02 Score=19.74 Aligned_cols=58 Identities=10% Similarity=0.088 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy5288 9 RQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFV 84 (186)
Q Consensus 9 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~ 84 (186)
++++++=++.++ + +...+.+++++.|++--+--...|..++ ++...+|+|...+..+.
T Consensus 4 ~efL~~L~~~L~----~-----lp~~e~~e~l~~Y~e~f~d~~~~G~sEe---------eii~~LG~P~~iA~~i~ 61 (181)
T PF08006_consen 4 NEFLNELEKYLK----K-----LPEEEREEILEYYEEYFDDAGEEGKSEE---------EIIAELGSPKEIAREIL 61 (181)
T ss_pred HHHHHHHHHHHH----c-----CCHHHHHHHHHHHHHHHHHhhhCCCCHH---------HHHHHcCCHHHHHHHHH
Confidence 355666667776 1 2235778888888875332222222221 34445666666655543
No 494
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.97 E-value=5.1e+02 Score=21.78 Aligned_cols=85 Identities=12% Similarity=-0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc------------------------
Q psy5288 98 AIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE------------------------ 153 (186)
Q Consensus 98 A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~------------------------ 153 (186)
+-.+|+|+.+..++..+ .--.-.+-|.++... ++|.+....+.-|=.-++..
T Consensus 40 ~~~~y~Q~~q~~kk~~~---~il~~L~~Gl~a~~~-~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~ 115 (449)
T COG3014 40 PKKAYEQSKQFTKKKKN---ALLWDLQNGLSALYA-RDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVR 115 (449)
T ss_pred chhHHHHHHHhhhhhhH---HHHHhhhhhHHHHHh-hhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchh
Q ss_pred ---CChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 154 ---ENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 154 ---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
+.-.....+..-+|.-|.+..|++.|.--|+|+
T Consensus 116 ~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRa 151 (449)
T COG3014 116 AYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRA 151 (449)
T ss_pred hcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHH
No 495
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.84 E-value=2e+02 Score=25.90 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=16.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q psy5288 48 NLFKLGKKWNDGGNAFLQAGT 68 (186)
Q Consensus 48 ~~~~~~g~~~~A~~~y~~a~~ 68 (186)
.+|..+|+|++|+++-.++.+
T Consensus 67 KvYy~LgeY~~Ai~yAL~agd 87 (926)
T COG5116 67 KVYYVLGEYQQAIEYALRAGD 87 (926)
T ss_pred HHHHHHHhHHHHHHHHHhcCC
Confidence 467788888888887766666
No 496
>KOG1914|consensus
Probab=20.46 E-value=6.3e+02 Score=22.66 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHHHc
Q psy5288 76 KHDAGLCFVDAANCYKKS--------NPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 76 ~~~aa~~~~~a~~~y~~~--------~~~~A~~~~~~Al~i~~~~ 112 (186)
+...+..+..+++++... -.+++.++|+++++.....
T Consensus 282 Wy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 282 WYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 345566666677766543 2467777777776655433
No 497
>PF11334 DUF3136: Protein of unknown function (DUF3136); InterPro: IPR021483 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=20.42 E-value=1.9e+02 Score=17.52 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=28.4
Q ss_pred cCCHHHHHHHHHHHHHHHhccCChHHH---HHHHHHHHHHHHhc
Q psy5288 133 LEDQEKAIDHYQHAADCYAGEENKSSA---NKCLIKIANYSALT 173 (186)
Q Consensus 133 lg~~~~Ai~~y~kA~~l~~~~~~~~~~---~~~~~~la~~y~~~ 173 (186)
+|+.+.-...|-||+.+.-..|..... ..||..|..+...+
T Consensus 3 IgELea~y~~YckALr~Lv~~G~~~~~i~rTvCW~rL~~Lh~~L 46 (64)
T PF11334_consen 3 IGELEAGYPLYCKALRRLVADGRSEEEIRRTVCWDRLETLHRSL 46 (64)
T ss_pred HHHHHcCchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 356666677888999987776654333 35888888777654
No 498
>KOG2709|consensus
Probab=20.37 E-value=1.5e+02 Score=25.35 Aligned_cols=32 Identities=16% Similarity=0.375 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q psy5288 80 GLCFVDAANCYKKS-NPAEAIKAIERAVEIHTD 111 (186)
Q Consensus 80 a~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~ 111 (186)
+....+.|.+|... ++.+|+.+|++++.+..+
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 44455666777666 777777777777777655
No 499
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=20.25 E-value=3.5e+02 Score=19.60 Aligned_cols=21 Identities=5% Similarity=-0.062 Sum_probs=10.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q psy5288 125 IAEIYEKELEDQEKAIDHYQHA 146 (186)
Q Consensus 125 lg~~y~~~lg~~~~Ai~~y~kA 146 (186)
-|.++... |++++|+..+...
T Consensus 50 dg~l~i~r-g~w~eA~rvlr~l 70 (153)
T TIGR02561 50 DGWLLIAR-GNYDEAARILREL 70 (153)
T ss_pred HHHHHHHc-CCHHHHHHHHHhh
Confidence 34444443 5555555554443
No 500
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=20.07 E-value=5.3e+02 Score=21.69 Aligned_cols=75 Identities=9% Similarity=-0.020 Sum_probs=0.0
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH--HhccCHHHHHHHHH
Q psy5288 108 IHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYS--ALTDHLDKAIKLYE 184 (186)
Q Consensus 108 i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y--~~~g~~~~A~~~~~ 184 (186)
+....+-+..-+......+.-..+. ++|..|...|+++..-.......... ..+..+.+.| +..-+|++|.++++
T Consensus 119 l~~~~nP~~v~~~~e~~~~r~l~n~-~dy~aA~~~~~~L~~r~l~~~~~~~~-~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 119 LIEPSDPYNVEGNTEQGYARRAINA-FDYLFAHARLETLLRRLLSAVNHTFY-EAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHhcccChhhhhHH-HHHHHHHHHHHHHHccCHHHHHHHHh
Done!