Query psy5288
Match_columns 186
No_of_seqs 125 out of 1182
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 22:44:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qqe_A Vesicular transport pro 100.0 3.6E-30 1.2E-34 202.8 21.0 178 6-185 2-183 (292)
2 2ifu_A Gamma-SNAP; membrane fu 100.0 1.5E-26 5E-31 183.3 22.6 177 1-185 2-180 (307)
3 1qqe_A Vesicular transport pro 99.9 5.5E-21 1.9E-25 150.2 22.9 170 4-185 32-224 (292)
4 2ifu_A Gamma-SNAP; membrane fu 99.9 1.3E-20 4.6E-25 149.0 22.7 150 35-185 71-220 (307)
5 3ulq_A Response regulator aspa 99.8 1.2E-18 4.2E-23 140.8 24.3 150 35-185 138-289 (383)
6 3ro3_A PINS homolog, G-protein 99.8 2.8E-18 9.5E-23 120.6 21.9 151 34-185 3-154 (164)
7 3q15_A PSP28, response regulat 99.8 1.7E-18 5.8E-23 140.0 23.6 167 6-185 118-286 (378)
8 3gw4_A Uncharacterized protein 99.8 3.2E-17 1.1E-21 120.3 22.4 147 38-185 24-172 (203)
9 2qfc_A PLCR protein; TPR, HTH, 99.8 7.9E-18 2.7E-22 131.9 19.7 168 5-185 72-262 (293)
10 3u3w_A Transcriptional activat 99.8 1.1E-17 3.6E-22 131.1 19.6 144 41-185 116-262 (293)
11 3ulq_A Response regulator aspa 99.8 9.5E-17 3.2E-21 129.7 24.5 142 43-185 187-364 (383)
12 4a1s_A PINS, partner of inscut 99.8 8.9E-17 3E-21 130.1 22.6 168 5-185 45-248 (411)
13 3sf4_A G-protein-signaling mod 99.8 2.2E-16 7.4E-21 126.8 23.3 151 34-185 181-332 (406)
14 3ro2_A PINS homolog, G-protein 99.8 3E-16 1E-20 122.0 22.5 145 40-185 43-208 (338)
15 3q15_A PSP28, response regulat 99.8 5.4E-17 1.9E-21 131.2 18.6 143 42-185 103-247 (378)
16 3edt_B KLC 2, kinesin light ch 99.8 1.7E-16 6E-21 121.0 20.0 173 3-185 15-194 (283)
17 3sf4_A G-protein-signaling mod 99.8 3.4E-16 1.2E-20 125.6 22.5 153 32-185 59-252 (406)
18 3ro2_A PINS homolog, G-protein 99.8 3.9E-16 1.3E-20 121.4 22.2 151 34-185 177-328 (338)
19 3nf1_A KLC 1, kinesin light ch 99.7 7.2E-16 2.5E-20 119.5 22.4 147 38-185 67-220 (311)
20 4a1s_A PINS, partner of inscut 99.7 7.6E-16 2.6E-20 124.6 23.1 150 35-185 218-368 (411)
21 3edt_B KLC 2, kinesin light ch 99.7 4.3E-15 1.5E-19 113.3 20.7 148 37-185 82-277 (283)
22 4b4t_Q 26S proteasome regulato 99.7 2.4E-15 8.2E-20 122.6 20.3 142 43-185 58-200 (434)
23 3gw4_A Uncharacterized protein 99.7 1.6E-14 5.3E-19 105.8 20.1 155 6-172 43-199 (203)
24 3nf1_A KLC 1, kinesin light ch 99.7 7.6E-15 2.6E-19 113.7 19.0 151 34-185 21-178 (311)
25 3vtx_A MAMA; tetratricopeptide 99.7 8.3E-15 2.8E-19 106.3 18.0 88 85-185 78-166 (184)
26 3uq3_A Heat shock protein STI1 99.7 4.9E-14 1.7E-18 106.2 22.0 162 5-185 2-198 (258)
27 4gyw_A UDP-N-acetylglucosamine 99.6 3.4E-15 1.1E-19 130.9 15.7 152 3-185 4-170 (723)
28 2qfc_A PLCR protein; TPR, HTH, 99.6 9.4E-15 3.2E-19 114.3 15.5 146 39-185 74-221 (293)
29 2pl2_A Hypothetical conserved 99.6 1.1E-14 3.8E-19 109.4 15.1 135 32-186 51-211 (217)
30 3u3w_A Transcriptional activat 99.6 1.8E-14 6.3E-19 112.6 16.8 122 37-159 152-276 (293)
31 4gcn_A Protein STI-1; structur 99.6 6.3E-14 2.2E-18 96.9 17.5 111 35-152 3-115 (127)
32 3ro3_A PINS homolog, G-protein 99.6 1.4E-13 4.8E-18 96.2 19.1 119 35-154 44-163 (164)
33 1hz4_A MALT regulatory protein 99.6 3E-13 1E-17 108.4 23.3 144 40-185 53-199 (373)
34 3qky_A Outer membrane assembly 99.6 6E-14 2.1E-18 107.5 17.4 163 5-186 12-221 (261)
35 4gyw_A UDP-N-acetylglucosamine 99.6 3E-14 1E-18 124.9 16.9 130 37-185 6-136 (723)
36 2pl2_A Hypothetical conserved 99.6 4.2E-14 1.4E-18 106.2 15.4 133 33-185 18-176 (217)
37 4i17_A Hypothetical protein; T 99.6 7.3E-14 2.5E-18 104.7 15.1 146 8-176 7-169 (228)
38 3as5_A MAMA; tetratricopeptide 99.6 1.2E-13 4.1E-18 98.8 14.4 154 1-185 1-169 (186)
39 4i17_A Hypothetical protein; T 99.6 7.7E-14 2.6E-18 104.6 12.9 132 41-185 8-142 (228)
40 3uq3_A Heat shock protein STI1 99.5 5.8E-13 2E-17 100.3 17.8 140 38-185 3-164 (258)
41 4eqf_A PEX5-related protein; a 99.5 1.6E-13 5.3E-18 109.5 15.3 140 33-185 78-272 (365)
42 4gcn_A Protein STI-1; structur 99.5 2.5E-13 8.6E-18 93.8 13.7 102 77-185 5-108 (127)
43 2yhc_A BAMD, UPF0169 lipoprote 99.5 9.4E-13 3.2E-17 99.1 17.9 146 34-186 18-210 (225)
44 3hym_B Cell division cycle pro 99.5 3.2E-13 1.1E-17 105.3 15.6 126 48-186 167-296 (330)
45 4ga2_A E3 SUMO-protein ligase 99.5 6.9E-15 2.4E-19 104.6 5.4 125 32-175 9-149 (150)
46 2vq2_A PILW, putative fimbrial 99.5 2.5E-12 8.7E-17 94.8 19.2 153 4-185 4-172 (225)
47 2ho1_A Type 4 fimbrial biogene 99.5 1.7E-12 6E-17 98.0 18.0 135 34-185 51-200 (252)
48 4abn_A Tetratricopeptide repea 99.5 2.1E-13 7.2E-18 113.9 13.6 137 32-185 114-283 (474)
49 3n71_A Histone lysine methyltr 99.5 1.7E-12 5.9E-17 109.1 19.0 138 47-185 316-460 (490)
50 4eqf_A PEX5-related protein; a 99.5 6E-13 2E-17 106.1 15.5 141 32-185 111-306 (365)
51 4gco_A Protein STI-1; structur 99.5 5.8E-13 2E-17 92.0 13.2 114 38-170 11-125 (126)
52 1hz4_A MALT regulatory protein 99.5 1.1E-11 3.8E-16 99.2 22.4 179 4-185 29-240 (373)
53 3u4t_A TPR repeat-containing p 99.5 4.7E-13 1.6E-17 102.1 13.5 136 33-185 16-167 (272)
54 3cv0_A Peroxisome targeting si 99.5 2.5E-12 8.5E-17 100.1 17.5 142 31-185 149-311 (327)
55 1fch_A Peroxisomal targeting s 99.5 8.8E-13 3E-17 104.7 14.3 141 32-185 76-276 (368)
56 4ga2_A E3 SUMO-protein ligase 99.5 4.6E-13 1.6E-17 95.1 11.2 122 45-185 2-125 (150)
57 1hh8_A P67PHOX, NCF-2, neutrop 99.5 5.7E-13 2E-17 98.5 12.1 132 37-185 4-146 (213)
58 3u4t_A TPR repeat-containing p 99.5 5.2E-13 1.8E-17 101.9 11.8 124 49-185 117-246 (272)
59 1fch_A Peroxisomal targeting s 99.5 3.1E-12 1.1E-16 101.5 15.9 141 32-185 110-310 (368)
60 3hym_B Cell division cycle pro 99.5 2.4E-12 8.2E-17 100.3 14.8 141 32-185 102-261 (330)
61 2q7f_A YRRB protein; TPR, prot 99.4 2.9E-12 9.9E-17 95.9 14.4 133 34-185 71-218 (243)
62 2y4t_A DNAJ homolog subfamily 99.4 1E-11 3.6E-16 101.1 18.9 158 3-185 21-236 (450)
63 4b4t_Q 26S proteasome regulato 99.4 1E-11 3.5E-16 101.0 18.6 151 34-185 69-241 (434)
64 2q7f_A YRRB protein; TPR, prot 99.4 7.4E-13 2.5E-17 99.1 10.7 135 32-185 35-184 (243)
65 1p5q_A FKBP52, FK506-binding p 99.4 1.7E-12 5.6E-17 104.0 13.2 134 38-184 145-289 (336)
66 1ouv_A Conserved hypothetical 99.4 1.3E-11 4.3E-16 94.9 17.6 128 33-185 55-211 (273)
67 3urz_A Uncharacterized protein 99.4 4.2E-12 1.4E-16 94.6 14.2 93 86-185 60-182 (208)
68 3qky_A Outer membrane assembly 99.4 5.8E-12 2E-16 96.4 15.1 140 40-186 15-174 (261)
69 3ieg_A DNAJ homolog subfamily 99.4 6.5E-12 2.2E-16 98.6 15.7 154 7-185 2-179 (359)
70 2ho1_A Type 4 fimbrial biogene 99.4 1.2E-11 4E-16 93.4 16.2 137 32-185 83-234 (252)
71 3gyz_A Chaperone protein IPGC; 99.4 1.2E-12 4E-17 93.6 10.0 103 37-152 33-136 (151)
72 3ieg_A DNAJ homolog subfamily 99.4 3.4E-11 1.2E-15 94.5 19.2 142 32-185 166-331 (359)
73 1w3b_A UDP-N-acetylglucosamine 99.4 3.3E-12 1.1E-16 102.7 13.4 58 121-185 273-330 (388)
74 1a17_A Serine/threonine protei 99.4 8.4E-12 2.9E-16 88.1 14.0 134 35-185 8-142 (166)
75 1w3b_A UDP-N-acetylglucosamine 99.4 4.8E-12 1.7E-16 101.7 14.2 58 121-185 307-364 (388)
76 2xpi_A Anaphase-promoting comp 99.4 1.3E-11 4.6E-16 104.1 17.5 140 33-185 420-575 (597)
77 3cv0_A Peroxisome targeting si 99.4 1.5E-11 5.2E-16 95.6 16.3 155 6-185 19-231 (327)
78 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.5E-11 8.4E-16 92.4 17.0 26 160-185 215-240 (275)
79 4gco_A Protein STI-1; structur 99.4 3.4E-12 1.2E-16 88.1 10.6 97 75-185 9-106 (126)
80 2h6f_A Protein farnesyltransfe 99.4 2.4E-12 8.1E-17 105.1 11.2 127 40-185 97-225 (382)
81 4g1t_A Interferon-induced prot 99.4 6.3E-12 2.2E-16 103.3 13.9 140 40-185 51-200 (472)
82 2fo7_A Synthetic consensus TPR 99.4 9.8E-12 3.4E-16 83.9 12.5 126 41-185 2-128 (136)
83 3fp2_A TPR repeat-containing p 99.4 1.2E-11 4.2E-16 102.8 15.6 141 32-185 322-487 (537)
84 2hr2_A Hypothetical protein; a 99.4 2.2E-11 7.4E-16 87.5 14.6 113 40-153 11-135 (159)
85 2r5s_A Uncharacterized protein 99.4 9.1E-13 3.1E-17 95.5 7.1 153 3-185 1-169 (176)
86 2vsy_A XCC0866; transferase, g 99.4 8.3E-12 2.8E-16 106.0 14.0 126 41-185 24-153 (568)
87 2h6f_A Protein farnesyltransfe 99.4 5.4E-12 1.8E-16 103.0 12.4 134 33-185 110-265 (382)
88 3gyz_A Chaperone protein IPGC; 99.4 2.6E-11 8.9E-16 86.5 14.2 122 37-185 6-129 (151)
89 3upv_A Heat shock protein STI1 99.4 2.9E-11 9.8E-16 82.4 13.8 121 39-172 3-124 (126)
90 2fbn_A 70 kDa peptidylprolyl i 99.4 7.9E-12 2.7E-16 92.0 11.4 131 37-180 35-176 (198)
91 3as5_A MAMA; tetratricopeptide 99.4 9.9E-12 3.4E-16 88.7 11.5 131 36-185 4-135 (186)
92 2pzi_A Probable serine/threoni 99.4 8.1E-12 2.8E-16 108.8 12.9 135 32-186 403-560 (681)
93 3rkv_A Putative peptidylprolyl 99.3 1.1E-11 3.9E-16 88.3 11.6 126 37-174 8-146 (162)
94 2vq2_A PILW, putative fimbrial 99.3 8.5E-11 2.9E-15 86.5 16.6 165 4-185 23-207 (225)
95 2y4t_A DNAJ homolog subfamily 99.3 5.1E-11 1.8E-15 97.0 16.5 142 32-185 189-354 (450)
96 1ouv_A Conserved hypothetical 99.3 6.1E-11 2.1E-15 91.0 16.1 128 33-185 91-247 (273)
97 2hr2_A Hypothetical protein; a 99.3 2.2E-11 7.7E-16 87.4 12.2 106 79-185 10-127 (159)
98 4abn_A Tetratricopeptide repea 99.3 9.6E-12 3.3E-16 103.9 11.5 165 6-186 120-318 (474)
99 2gw1_A Mitochondrial precursor 99.3 1.8E-11 6.2E-16 101.0 13.0 139 34-185 318-474 (514)
100 3fp2_A TPR repeat-containing p 99.3 2.4E-11 8.2E-16 101.0 12.8 119 47-184 283-402 (537)
101 3rjv_A Putative SEL1 repeat pr 99.3 1.7E-10 5.9E-15 86.1 16.2 132 33-185 31-193 (212)
102 1hh8_A P67PHOX, NCF-2, neutrop 99.3 8.1E-11 2.8E-15 86.8 14.2 128 7-153 5-154 (213)
103 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 3.3E-11 1.1E-15 100.3 13.3 132 38-182 266-407 (457)
104 2xpi_A Anaphase-promoting comp 99.3 3E-11 1E-15 101.9 13.2 124 49-185 416-541 (597)
105 2vyi_A SGTA protein; chaperone 99.3 1.7E-10 5.8E-15 77.6 14.5 123 35-176 7-130 (131)
106 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.9E-10 6.5E-15 86.4 15.7 140 41-186 5-173 (225)
107 2vgx_A Chaperone SYCD; alterna 99.3 1E-11 3.5E-16 87.9 8.0 104 37-153 18-122 (148)
108 1ihg_A Cyclophilin 40; ppiase 99.3 3.9E-11 1.3E-15 97.4 12.4 131 38-181 221-362 (370)
109 1elr_A TPR2A-domain of HOP; HO 99.3 2.5E-10 8.5E-15 76.9 14.5 123 38-174 2-126 (131)
110 3sz7_A HSC70 cochaperone (SGT) 99.3 2.1E-10 7.2E-15 81.7 14.8 108 35-155 6-114 (164)
111 4g1t_A Interferon-induced prot 99.3 1.2E-10 4E-15 95.7 15.2 146 33-185 64-272 (472)
112 2lni_A Stress-induced-phosphop 99.3 8.3E-11 2.9E-15 79.7 12.1 122 35-175 11-133 (133)
113 3rkv_A Putative peptidylprolyl 99.3 7.2E-11 2.5E-15 84.0 12.2 102 77-185 8-122 (162)
114 1xnf_A Lipoprotein NLPI; TPR, 99.3 2.7E-11 9.2E-16 92.2 10.5 134 32-185 17-169 (275)
115 2gw1_A Mitochondrial precursor 99.3 3.5E-10 1.2E-14 93.2 17.9 162 5-185 3-262 (514)
116 3sz7_A HSC70 cochaperone (SGT) 99.3 1.1E-10 3.6E-15 83.3 12.2 98 75-185 6-104 (164)
117 3upv_A Heat shock protein STI1 99.3 1.2E-10 4.2E-15 79.2 11.9 93 80-185 4-97 (126)
118 3qww_A SET and MYND domain-con 99.2 7.5E-10 2.6E-14 91.7 17.2 115 51-166 309-430 (433)
119 3qou_A Protein YBBN; thioredox 99.2 8.1E-11 2.8E-15 92.0 10.4 135 34-185 131-280 (287)
120 3qwp_A SET and MYND domain-con 99.2 4.7E-10 1.6E-14 92.9 15.4 136 36-173 284-426 (429)
121 3mkr_A Coatomer subunit epsilo 99.2 4.1E-10 1.4E-14 88.2 14.1 136 32-185 113-260 (291)
122 3rjv_A Putative SEL1 repeat pr 99.2 1.2E-09 4.2E-14 81.4 16.0 124 41-185 19-154 (212)
123 1elr_A TPR2A-domain of HOP; HO 99.2 6E-10 2.1E-14 75.0 13.0 100 79-185 3-104 (131)
124 3vtx_A MAMA; tetratricopeptide 99.2 3.5E-10 1.2E-14 81.6 12.5 92 48-152 81-173 (184)
125 2xcb_A PCRH, regulatory protei 99.2 2.1E-10 7.2E-15 80.0 10.8 107 34-153 12-119 (142)
126 2e2e_A Formate-dependent nitri 99.2 1.2E-10 4E-15 83.8 9.4 110 31-153 21-148 (177)
127 2ond_A Cleavage stimulation fa 99.2 6E-10 2.1E-14 87.5 14.1 83 94-185 184-266 (308)
128 2fbn_A 70 kDa peptidylprolyl i 99.2 5.7E-11 2E-15 87.3 7.7 122 51-185 15-147 (198)
129 2xcb_A PCRH, regulatory protei 99.2 2E-09 6.9E-14 75.0 15.3 58 47-110 59-117 (142)
130 1p5q_A FKBP52, FK506-binding p 99.2 2.6E-11 8.8E-16 97.0 6.2 120 53-185 126-255 (336)
131 2vgx_A Chaperone SYCD; alterna 99.2 1.7E-09 5.9E-14 76.3 15.0 57 48-110 63-120 (148)
132 3q49_B STIP1 homology and U bo 99.2 5.4E-10 1.8E-14 76.6 11.7 121 39-173 8-129 (137)
133 1na0_A Designed protein CTPR3; 99.2 2.1E-09 7.1E-14 71.5 14.3 119 37-174 6-125 (125)
134 3n71_A Histone lysine methyltr 99.1 3.1E-09 1.1E-13 89.3 17.8 116 35-151 346-466 (490)
135 3mkr_A Coatomer subunit epsilo 99.1 1E-09 3.6E-14 85.9 13.9 116 47-185 108-225 (291)
136 1wao_1 Serine/threonine protei 99.1 2.7E-11 9.3E-16 101.4 5.0 123 43-184 9-134 (477)
137 2if4_A ATFKBP42; FKBP-like, al 99.1 9.3E-11 3.2E-15 93.9 7.9 135 38-185 177-324 (338)
138 3q49_B STIP1 homology and U bo 99.1 8.1E-10 2.8E-14 75.7 11.7 93 80-185 9-102 (137)
139 3qww_A SET and MYND domain-con 99.1 5.5E-10 1.9E-14 92.6 12.7 91 94-185 313-407 (433)
140 2pzi_A Probable serine/threoni 99.1 6.8E-11 2.3E-15 103.0 7.4 134 32-185 445-601 (681)
141 2l6j_A TPR repeat-containing p 99.1 6.2E-11 2.1E-15 78.3 5.5 99 80-185 4-103 (111)
142 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 1.5E-10 5E-15 96.4 7.5 120 53-185 247-376 (457)
143 1hxi_A PEX5, peroxisome target 99.1 4E-10 1.4E-14 76.9 8.4 100 40-152 17-117 (121)
144 2dba_A Smooth muscle cell asso 99.1 3.1E-09 1.1E-13 73.2 12.7 118 38-171 26-144 (148)
145 2xm6_A Protein corresponding t 99.1 5.8E-09 2E-13 86.8 16.6 99 33-148 56-179 (490)
146 1elw_A TPR1-domain of HOP; HOP 99.1 2E-09 6.8E-14 71.0 11.1 112 40-170 4-116 (118)
147 1elw_A TPR1-domain of HOP; HOP 99.1 3.3E-09 1.1E-13 69.9 11.8 93 80-185 4-97 (118)
148 2vsy_A XCC0866; transferase, g 99.1 6.7E-10 2.3E-14 94.2 10.0 114 53-185 2-116 (568)
149 1a17_A Serine/threonine protei 99.1 3.6E-09 1.2E-13 74.3 12.2 95 78-185 11-106 (166)
150 2xev_A YBGF; tetratricopeptide 99.1 3.2E-09 1.1E-13 71.9 11.5 105 42-153 4-109 (129)
151 2lni_A Stress-induced-phosphop 99.1 1.3E-09 4.4E-14 73.7 9.5 96 77-185 13-109 (133)
152 2xm6_A Protein corresponding t 99.0 1.1E-08 3.7E-13 85.1 16.7 128 33-185 272-428 (490)
153 2vyi_A SGTA protein; chaperone 99.0 5.8E-09 2E-13 69.9 12.3 96 77-185 9-105 (131)
154 3qwp_A SET and MYND domain-con 99.0 3.2E-09 1.1E-13 87.9 12.8 104 81-185 289-396 (429)
155 2xev_A YBGF; tetratricopeptide 99.0 7.8E-09 2.7E-13 69.9 12.7 60 47-109 46-106 (129)
156 1na0_A Designed protein CTPR3; 99.0 2.7E-09 9.3E-14 70.9 10.1 97 76-185 5-102 (125)
157 1klx_A Cysteine rich protein B 99.0 8.1E-09 2.8E-13 72.1 12.9 104 55-185 10-122 (138)
158 2kck_A TPR repeat; tetratricop 99.0 5E-10 1.7E-14 73.4 6.3 92 83-185 9-102 (112)
159 2e2e_A Formate-dependent nitri 99.0 2.5E-09 8.5E-14 76.8 10.4 115 51-185 21-140 (177)
160 1hxi_A PEX5, peroxisome target 99.0 2.1E-09 7.2E-14 73.3 9.3 88 83-184 20-109 (121)
161 1ihg_A Cyclophilin 40; ppiase 99.0 4.2E-09 1.4E-13 85.4 12.5 99 80-185 223-332 (370)
162 2c2l_A CHIP, carboxy terminus 99.0 8.6E-10 2.9E-14 85.9 7.7 101 40-153 4-105 (281)
163 2dba_A Smooth muscle cell asso 99.0 9.5E-09 3.2E-13 70.7 12.2 97 79-185 27-124 (148)
164 3urz_A Uncharacterized protein 99.0 3.2E-09 1.1E-13 78.8 10.4 112 39-186 3-114 (208)
165 1xi4_A Clathrin heavy chain; a 99.0 1.2E-08 4.3E-13 93.8 16.0 113 47-185 1112-1246(1630)
166 3qou_A Protein YBBN; thioredox 99.0 2.8E-09 9.5E-14 83.1 9.5 125 42-185 119-244 (287)
167 3k9i_A BH0479 protein; putativ 99.0 6.8E-10 2.3E-14 74.9 5.2 90 53-152 3-93 (117)
168 2r5s_A Uncharacterized protein 98.9 2E-09 6.8E-14 77.6 7.0 124 42-185 8-133 (176)
169 3k9i_A BH0479 protein; putativ 98.9 4.3E-09 1.5E-13 70.8 7.7 66 39-110 26-92 (117)
170 2ond_A Cleavage stimulation fa 98.9 3.5E-08 1.2E-12 77.3 14.1 128 41-185 100-228 (308)
171 2fo7_A Synthetic consensus TPR 98.9 4.9E-08 1.7E-12 65.3 13.0 96 43-151 38-134 (136)
172 1xi4_A Clathrin heavy chain; a 98.9 1.3E-07 4.6E-12 87.1 17.8 138 33-186 1062-1221(1630)
173 2if4_A ATFKBP42; FKBP-like, al 98.9 5.7E-09 1.9E-13 83.4 8.1 101 79-186 178-290 (338)
174 2l6j_A TPR repeat-containing p 98.8 2.3E-09 8E-14 70.5 3.9 99 40-145 4-103 (111)
175 2ooe_A Cleavage stimulation fa 98.8 8.7E-08 3E-12 80.4 14.4 128 40-185 321-450 (530)
176 2c2l_A CHIP, carboxy terminus 98.8 1.3E-08 4.3E-13 79.2 8.7 93 80-185 4-97 (281)
177 4f3v_A ESX-1 secretion system 98.8 3.7E-08 1.3E-12 77.0 10.6 132 40-186 102-234 (282)
178 2kck_A TPR repeat; tetratricop 98.8 8.4E-09 2.9E-13 67.4 5.8 100 42-152 8-109 (112)
179 1na3_A Designed protein CTPR2; 98.8 9.2E-08 3.1E-12 60.4 10.5 86 76-174 5-91 (91)
180 1zu2_A Mitochondrial import re 98.8 6.7E-09 2.3E-13 74.4 5.2 90 51-153 13-124 (158)
181 1klx_A Cysteine rich protein B 98.7 1.5E-07 5.2E-12 65.5 11.2 87 46-149 31-126 (138)
182 3e4b_A ALGK; tetratricopeptide 98.7 2.5E-07 8.7E-12 76.6 14.1 117 44-185 180-312 (452)
183 3e4b_A ALGK; tetratricopeptide 98.7 3.8E-07 1.3E-11 75.5 14.8 84 83-184 286-382 (452)
184 1wao_1 Serine/threonine protei 98.7 9.3E-09 3.2E-13 86.0 5.1 92 81-185 7-99 (477)
185 1zu2_A Mitochondrial import re 98.7 3.1E-08 1.1E-12 70.9 6.9 79 94-185 17-116 (158)
186 2kat_A Uncharacterized protein 98.7 2.9E-08 9.8E-13 66.3 6.1 76 97-185 3-78 (115)
187 1b89_A Protein (clathrin heavy 98.7 3E-08 1E-12 82.0 6.7 135 32-185 44-232 (449)
188 3ma5_A Tetratricopeptide repea 98.6 1.9E-07 6.5E-12 61.1 8.8 60 119-185 7-66 (100)
189 2kat_A Uncharacterized protein 98.6 3.1E-07 1.1E-11 61.1 9.7 101 58-175 3-104 (115)
190 3ma5_A Tetratricopeptide repea 98.6 6.3E-07 2.1E-11 58.5 10.0 84 81-175 8-92 (100)
191 1na3_A Designed protein CTPR2; 98.6 4.2E-07 1.4E-11 57.3 8.3 63 116-185 6-68 (91)
192 2ooe_A Cleavage stimulation fa 98.5 1.5E-06 5.2E-11 72.8 12.7 162 7-185 304-488 (530)
193 2v5f_A Prolyl 4-hydroxylase su 98.5 7E-07 2.4E-11 59.1 8.5 66 119-185 5-71 (104)
194 1b89_A Protein (clathrin heavy 98.5 3.7E-07 1.3E-11 75.5 8.5 130 6-150 78-237 (449)
195 2kc7_A BFR218_protein; tetratr 98.3 3.3E-06 1.1E-10 54.3 8.1 61 86-153 6-68 (99)
196 4f3v_A ESX-1 secretion system 98.3 1.1E-05 3.9E-10 62.9 12.0 96 47-152 142-240 (282)
197 3ffl_A Anaphase-promoting comp 98.3 9.4E-05 3.2E-09 52.9 15.0 104 82-186 23-148 (167)
198 2kc7_A BFR218_protein; tetratr 98.2 5.1E-06 1.7E-10 53.4 7.0 56 123-185 4-60 (99)
199 2v5f_A Prolyl 4-hydroxylase su 98.2 3E-05 1E-09 51.0 10.5 71 81-153 7-79 (104)
200 3ly7_A Transcriptional activat 98.1 8.1E-05 2.8E-09 60.1 13.8 137 35-185 192-335 (372)
201 1dce_A Protein (RAB geranylger 98.0 4.8E-05 1.7E-09 64.9 11.6 131 36-185 45-217 (567)
202 2wpv_A GET4, UPF0363 protein Y 98.0 0.0014 4.6E-08 51.8 18.1 150 34-184 27-212 (312)
203 3mv2_B Coatomer subunit epsilo 97.9 0.00021 7.2E-09 56.5 12.3 129 44-185 104-236 (310)
204 3dra_A Protein farnesyltransfe 97.9 0.00072 2.5E-08 53.3 15.1 130 37-185 50-211 (306)
205 3txn_A 26S proteasome regulato 97.8 0.0091 3.1E-07 48.6 21.4 147 37-184 55-205 (394)
206 3mv2_B Coatomer subunit epsilo 97.8 0.00074 2.5E-08 53.3 13.7 135 34-185 114-278 (310)
207 3txn_A 26S proteasome regulato 97.8 0.0036 1.2E-07 51.0 18.0 111 45-156 104-217 (394)
208 3dra_A Protein farnesyltransfe 97.7 0.0011 3.8E-08 52.2 13.7 131 33-185 29-171 (306)
209 1dce_A Protein (RAB geranylger 97.7 0.0015 5.2E-08 55.6 14.7 128 40-186 25-170 (567)
210 3bee_A Putative YFRE protein; 97.7 0.00022 7.6E-09 46.1 7.4 61 119-186 6-69 (93)
211 3lpz_A GET4 (YOR164C homolog); 97.6 0.011 3.8E-07 47.0 17.6 146 37-184 32-211 (336)
212 3ffl_A Anaphase-promoting comp 97.5 0.0087 3E-07 42.7 14.3 95 50-145 30-147 (167)
213 3dss_A Geranylgeranyl transfer 97.4 0.0034 1.2E-07 50.0 12.7 134 33-185 42-218 (331)
214 4e6h_A MRNA 3'-END-processing 97.4 0.0039 1.4E-07 54.3 13.6 128 47-185 385-529 (679)
215 3u64_A Protein TP_0956; tetrat 97.4 0.0041 1.4E-07 48.6 12.3 83 95-186 179-266 (301)
216 3dss_A Geranylgeranyl transfer 97.3 0.0048 1.6E-07 49.1 12.9 131 36-185 90-263 (331)
217 3q7a_A Farnesyltransferase alp 97.2 0.002 6.9E-08 51.7 9.4 130 37-185 71-233 (349)
218 3lpz_A GET4 (YOR164C homolog); 97.2 0.035 1.2E-06 44.1 16.2 144 34-183 10-159 (336)
219 3mkq_A Coatomer beta'-subunit; 97.1 0.042 1.4E-06 47.7 17.8 98 81-179 682-802 (814)
220 2wpv_A GET4, UPF0363 protein Y 97.1 0.014 4.9E-07 45.9 13.4 129 53-183 26-157 (312)
221 4b4t_P 26S proteasome regulato 97.1 0.064 2.2E-06 44.2 17.9 118 39-157 136-255 (445)
222 1pc2_A Mitochondria fission pr 97.1 0.0079 2.7E-07 42.4 10.4 62 119-185 32-96 (152)
223 3ly7_A Transcriptional activat 97.0 0.013 4.4E-07 47.3 12.5 129 7-152 195-342 (372)
224 3q7a_A Farnesyltransferase alp 96.9 0.006 2E-07 48.9 9.7 132 32-185 49-192 (349)
225 3bee_A Putative YFRE protein; 96.9 0.0045 1.5E-07 39.7 7.3 64 82-152 8-75 (93)
226 4b4t_R RPN7, 26S proteasome re 96.8 0.035 1.2E-06 45.5 13.7 105 45-153 136-241 (429)
227 4gns_B Protein CSD3, chitin bi 96.7 0.19 6.6E-06 44.2 17.9 122 52-185 260-396 (754)
228 4e6h_A MRNA 3'-END-processing 96.7 0.046 1.6E-06 47.6 13.8 165 5-185 359-566 (679)
229 3u64_A Protein TP_0956; tetrat 96.6 0.021 7.2E-07 44.6 10.4 87 56-152 179-272 (301)
230 4g26_A Pentatricopeptide repea 96.6 0.054 1.8E-06 45.4 13.7 93 82-185 107-200 (501)
231 3mkq_A Coatomer beta'-subunit; 96.6 0.13 4.4E-06 44.5 16.3 74 41-118 682-768 (814)
232 1pc2_A Mitochondria fission pr 95.9 0.2 6.7E-06 35.2 11.3 68 81-153 33-104 (152)
233 4b4t_R RPN7, 26S proteasome re 95.8 0.085 2.9E-06 43.2 10.5 101 81-185 132-233 (429)
234 4g26_A Pentatricopeptide repea 95.7 0.22 7.4E-06 41.7 12.7 127 42-185 28-165 (501)
235 1nzn_A CGI-135 protein, fissio 95.3 0.26 8.7E-06 33.5 9.7 62 119-185 35-99 (126)
236 2uy1_A Cleavage stimulation fa 95.2 0.82 2.8E-05 38.0 14.5 80 94-186 301-380 (493)
237 1ya0_A SMG-7 transcript varian 95.1 0.1 3.4E-06 43.8 8.6 60 119-185 152-211 (497)
238 4b4t_P 26S proteasome regulato 95.0 1.2 4.2E-05 36.5 20.7 102 83-185 140-243 (445)
239 2wm9_A Dedicator of cytokinesi 94.4 0.47 1.6E-05 38.9 10.9 34 35-68 6-39 (428)
240 2yin_A DOCK2, dedicator of cyt 94.4 0.69 2.4E-05 38.0 11.8 98 34-131 29-145 (436)
241 2ff4_A Probable regulatory pro 93.0 2.5 8.6E-05 33.9 12.9 57 122-185 174-230 (388)
242 1ya0_A SMG-7 transcript varian 92.5 0.33 1.1E-05 40.7 7.0 62 81-149 153-215 (497)
243 2yin_A DOCK2, dedicator of cyt 92.5 3.9 0.00013 33.6 14.9 132 36-172 11-145 (436)
244 3mkq_B Coatomer subunit alpha; 92.0 2.2 7.6E-05 30.5 10.0 22 43-64 37-58 (177)
245 4h7y_A Dual specificity protei 91.8 1.2 4.2E-05 31.2 8.1 62 116-185 58-119 (161)
246 4b4t_S RPN3, 26S proteasome re 90.7 1 3.5E-05 37.9 8.1 76 75-153 226-303 (523)
247 4h7y_A Dual specificity protei 90.6 3.2 0.00011 29.1 13.4 91 54-152 27-126 (161)
248 1y8m_A FIS1; mitochondria, unk 90.4 2.7 9.3E-05 29.0 8.8 64 117-185 37-102 (144)
249 3kae_A CDC27, possible protein 90.0 4.1 0.00014 29.4 9.7 61 124-185 67-139 (242)
250 2w2u_A Hypothetical P60 katani 89.6 1.1 3.9E-05 27.8 5.8 36 36-72 16-51 (83)
251 2v6y_A AAA family ATPase, P60 89.0 1.3 4.5E-05 27.5 5.8 34 37-71 9-42 (83)
252 4fhn_B Nucleoporin NUP120; pro 88.8 4.2 0.00014 37.4 11.3 124 46-178 848-989 (1139)
253 2crb_A Nuclear receptor bindin 88.7 1.4 4.9E-05 27.9 5.7 38 114-152 10-47 (97)
254 2w2u_A Hypothetical P60 katani 88.5 1.3 4.5E-05 27.5 5.5 26 126-152 26-51 (83)
255 2uy1_A Cleavage stimulation fa 88.1 4.6 0.00016 33.4 10.3 120 42-185 288-409 (493)
256 2v6y_A AAA family ATPase, P60 87.5 1.6 5.6E-05 27.0 5.5 27 125-152 17-43 (83)
257 4fhn_B Nucleoporin NUP120; pro 87.0 2.9 9.9E-05 38.4 9.1 97 85-183 847-961 (1139)
258 3mkq_B Coatomer subunit alpha; 87.0 6.7 0.00023 28.0 12.2 27 81-107 35-62 (177)
259 2cpt_A SKD1 protein, vacuolar 86.8 1.3 4.4E-05 29.5 5.1 29 123-152 22-50 (117)
260 4b4t_S RPN3, 26S proteasome re 86.7 2 6.7E-05 36.2 7.1 82 101-185 213-295 (523)
261 3o48_A Mitochondria fission 1 86.6 5.8 0.0002 27.0 9.8 62 119-185 40-103 (134)
262 2v6x_A Vacuolar protein sortin 85.5 3.9 0.00013 25.3 6.6 37 35-72 9-45 (85)
263 1wfd_A Hypothetical protein 15 85.5 3.7 0.00013 26.0 6.5 38 34-72 10-47 (93)
264 4a5x_A MITD1, MIT domain-conta 84.3 5.6 0.00019 24.8 8.5 33 119-152 16-48 (86)
265 2cpt_A SKD1 protein, vacuolar 84.1 2.7 9.3E-05 27.9 5.6 36 36-72 15-50 (117)
266 4a5x_A MITD1, MIT domain-conta 83.8 3.1 0.00011 25.9 5.5 38 34-72 11-48 (86)
267 1wfd_A Hypothetical protein 15 83.2 6.6 0.00023 24.8 8.6 30 122-152 18-47 (93)
268 3o48_A Mitochondria fission 1 82.3 3.9 0.00014 27.8 5.9 54 94-153 58-111 (134)
269 2v6x_A Vacuolar protein sortin 81.6 7.1 0.00024 24.0 8.6 31 121-152 15-45 (85)
270 2wm9_A Dedicator of cytokinesi 81.1 15 0.00051 29.9 10.1 116 56-172 7-140 (428)
271 2crb_A Nuclear receptor bindin 80.0 4.1 0.00014 25.9 4.9 31 40-70 15-45 (97)
272 1nzn_A CGI-135 protein, fissio 77.8 13 0.00045 24.9 9.7 66 83-153 38-107 (126)
273 4gq2_M Nucleoporin NUP120; bet 74.5 45 0.0015 30.1 12.0 93 79-174 840-950 (950)
274 1y8m_A FIS1; mitochondria, unk 73.4 19 0.00067 24.7 8.2 64 84-153 43-110 (144)
275 2o8p_A 14-3-3 domain containin 71.9 28 0.00096 25.8 8.9 71 80-150 120-198 (227)
276 2rpa_A Katanin P60 ATPase-cont 71.7 4.1 0.00014 25.0 3.3 30 122-152 15-44 (78)
277 3spa_A Mtrpol, DNA-directed RN 71.7 43 0.0015 30.9 10.9 98 80-185 127-226 (1134)
278 2wb7_A PT26-6P; extra chromoso 71.1 35 0.0012 28.4 9.5 30 119-150 488-517 (526)
279 3ax2_A Mitochondrial import re 71.0 5.2 0.00018 24.2 3.5 30 122-152 20-49 (73)
280 1om2_A Protein (mitochondrial 69.4 8 0.00027 24.6 4.3 30 122-152 23-52 (95)
281 3kae_A CDC27, possible protein 67.6 32 0.0011 24.8 10.6 91 48-150 41-144 (242)
282 2ff4_A Probable regulatory pro 65.9 48 0.0017 26.3 14.0 100 5-113 131-240 (388)
283 2br9_A 14-3-3E, 14-3-3 protein 65.5 40 0.0014 25.1 10.4 75 75-149 115-202 (234)
284 3iqu_A 14-3-3 protein sigma; s 64.9 41 0.0014 25.1 10.4 75 75-149 118-205 (236)
285 3re2_A Predicted protein; meni 64.3 38 0.0013 27.3 8.1 93 35-128 253-345 (472)
286 3t5x_A PCI domain-containing p 64.2 33 0.0011 24.7 7.4 59 115-175 10-68 (203)
287 3uzd_A 14-3-3 protein gamma; s 62.5 47 0.0016 25.0 10.4 73 77-149 118-203 (248)
288 1o9d_A 14-3-3-like protein C; 62.2 49 0.0017 25.1 10.4 75 75-149 120-207 (260)
289 3ubw_A 14-3-3E, 14-3-3 protein 62.1 49 0.0017 25.1 10.4 76 74-149 140-228 (261)
290 4gns_B Protein CSD3, chitin bi 61.4 30 0.001 30.5 7.8 48 92-146 350-397 (754)
291 3efz_A 14-3-3 protein; 14-3-3, 61.0 37 0.0013 25.8 7.3 69 81-149 142-226 (268)
292 3u84_A Menin; MLL, JUND, ledgf 59.7 48 0.0016 27.2 8.0 70 59-128 298-367 (550)
293 2pm7_A Protein WEB1, protein t 58.9 70 0.0024 25.8 10.5 85 100-185 227-361 (399)
294 2rpa_A Katanin P60 ATPase-cont 57.8 5 0.00017 24.6 1.7 24 162-185 14-37 (78)
295 2npm_A 14-3-3 domain containin 56.6 62 0.0021 24.5 10.3 76 75-150 141-228 (260)
296 2dl1_A Spartin; SPG20, MIT, st 56.5 20 0.00067 23.7 4.5 18 134-151 36-53 (116)
297 2r17_C Vacuolar protein sortin 54.0 74 0.0025 24.6 19.1 134 37-170 96-245 (298)
298 3ax2_A Mitochondrial import re 53.4 30 0.001 20.8 4.6 24 47-70 24-47 (73)
299 3spa_A Mtrpol, DNA-directed RN 52.1 39 0.0013 31.1 7.0 66 117-185 125-190 (1134)
300 2xze_A STAM-binding protein; h 50.8 35 0.0012 23.3 5.3 33 118-151 39-71 (146)
301 2wb7_A PT26-6P; extra chromoso 50.3 1.1E+02 0.0038 25.5 10.9 49 56-109 448-498 (526)
302 4ady_A RPN2, 26S proteasome re 48.0 1.6E+02 0.0055 26.7 12.4 25 47-71 77-101 (963)
303 2xze_A STAM-binding protein; h 48.0 55 0.0019 22.3 6.0 60 5-71 12-71 (146)
304 2qx5_A Nucleoporin NIC96; mRNA 45.0 1.5E+02 0.0052 25.6 11.5 26 161-186 537-564 (661)
305 3bu8_A Telomeric repeat-bindin 44.9 46 0.0016 24.6 5.3 50 136-185 88-139 (235)
306 3eab_A Spastin; spastin, MIT, 44.0 57 0.0019 20.4 5.2 28 56-83 13-42 (89)
307 4gq2_M Nucleoporin NUP120; bet 42.3 1.9E+02 0.0065 26.0 10.9 26 42-68 843-868 (950)
308 3jq1_A SUSD superfamily protei 40.7 51 0.0018 27.0 5.8 51 136-186 154-206 (481)
309 2a9u_A Ubiquitin carboxyl-term 40.4 85 0.0029 21.4 7.3 35 119-154 42-76 (144)
310 3snx_A SUSD homolog, putative 39.9 52 0.0018 26.9 5.6 28 159-186 190-217 (460)
311 3myv_A SUSD superfamily protei 39.7 46 0.0016 27.0 5.3 51 136-186 164-216 (454)
312 1om2_A Protein (mitochondrial 39.6 71 0.0024 20.2 5.9 46 35-83 12-60 (95)
313 4gq4_A Menin; tumor suppressor 39.1 1.3E+02 0.0043 24.8 7.4 78 35-113 260-337 (489)
314 2pm7_A Protein WEB1, protein t 38.8 1.3E+02 0.0045 24.1 7.7 30 115-145 332-361 (399)
315 3lew_A SUSD-like carbohydrate 37.0 53 0.0018 27.0 5.3 51 136-186 174-229 (495)
316 1wy6_A Hypothetical protein ST 36.8 1E+02 0.0035 21.3 7.6 41 107-148 112-153 (172)
317 1wy6_A Hypothetical protein ST 35.7 73 0.0025 22.1 4.8 126 34-185 21-150 (172)
318 3kez_A Putative sugar binding 35.2 54 0.0018 26.7 5.0 51 136-186 170-222 (461)
319 3hdx_A SUSD homolog, SUSD supe 34.9 60 0.0021 26.5 5.3 30 157-186 194-223 (478)
320 4a1g_A Mitotic checkpoint seri 34.4 51 0.0017 22.7 4.0 43 139-185 84-126 (152)
321 3t5v_B Nuclear mRNA export pro 33.3 2E+02 0.0068 23.5 8.3 38 115-153 216-254 (455)
322 2ymb_A MITD1, MIT domain-conta 32.7 9.3 0.00032 29.0 0.0 38 34-72 18-55 (257)
323 3mcx_A SUSD superfamily protei 32.6 56 0.0019 26.7 4.7 51 136-186 176-228 (477)
324 2ymb_A MITD1, MIT domain-conta 32.6 9.3 0.00032 29.0 0.0 28 124-152 28-55 (257)
325 3r9m_A BRO1 domain-containing 32.4 1.8E+02 0.0063 22.9 8.9 17 56-72 142-158 (376)
326 2dl1_A Spartin; SPG20, MIT, st 31.7 1.1E+02 0.0038 20.1 5.7 27 56-83 19-45 (116)
327 2a9u_A Ubiquitin carboxyl-term 31.5 1.2E+02 0.0042 20.6 6.2 41 35-75 37-77 (144)
328 3iqu_A 14-3-3 protein sigma; s 31.0 1.6E+02 0.0056 21.8 9.6 74 110-184 114-200 (236)
329 3re2_A Predicted protein; meni 30.9 2.1E+02 0.0072 23.1 10.8 106 61-168 236-344 (472)
330 2wvi_A Mitotic checkpoint seri 30.7 62 0.0021 22.6 4.0 26 160-185 96-121 (164)
331 4gq4_A Menin; tumor suppressor 29.0 2.4E+02 0.0082 23.1 10.0 90 61-152 243-335 (489)
332 4b4t_O 26S proteasome regulato 28.9 2.2E+02 0.0074 22.6 13.9 102 49-151 85-200 (393)
333 2vkj_A TM1634; membrane protei 27.5 1.2E+02 0.004 19.1 4.7 20 50-69 63-82 (106)
334 2oo2_A Hypothetical protein AF 26.8 89 0.003 19.3 3.8 23 161-183 36-58 (86)
335 4aez_C MAD3, mitotic spindle c 26.8 75 0.0026 23.4 4.0 122 56-185 51-175 (223)
336 3o10_A Sacsin; all-helical dom 26.5 1.1E+02 0.0039 20.4 4.7 39 3-46 4-42 (141)
337 4a1g_A Mitotic checkpoint seri 26.4 1.1E+02 0.0039 20.9 4.7 34 115-149 97-130 (152)
338 3qnk_A Putative lipoprotein; a 25.9 1.1E+02 0.0036 25.3 5.3 50 137-186 154-208 (517)
339 2pmr_A Uncharacterized protein 24.8 1.3E+02 0.0044 18.6 4.7 32 35-66 34-65 (87)
340 2npm_A 14-3-3 domain containin 24.1 2.3E+02 0.0079 21.3 9.9 71 111-184 138-222 (260)
341 2wvi_A Mitotic checkpoint seri 23.2 1.4E+02 0.0047 20.8 4.7 37 113-150 90-126 (164)
342 2zan_A Vacuolar protein sortin 23.0 18 0.0006 29.5 0.0 19 134-152 25-43 (444)
343 3i4g_A SUSD-like carbohydrate 21.1 1.3E+02 0.0045 24.9 5.0 50 137-186 168-224 (528)
344 3u84_A Menin; MLL, JUND, ledgf 20.9 3.5E+02 0.012 22.3 10.7 68 97-166 297-364 (550)
345 3esl_A Checkpoint serine/threo 20.9 1.6E+02 0.0054 21.3 4.7 33 116-149 112-144 (202)
346 3esl_A Checkpoint serine/threo 20.5 2.5E+02 0.0085 20.3 10.3 80 100-185 58-140 (202)
No 1
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.97 E-value=3.6e-30 Score=202.81 Aligned_cols=178 Identities=35% Similarity=0.582 Sum_probs=165.8
Q ss_pred HhHHHHHHHHHHhhccCCCCccccccCC--C-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy5288 6 QKARQLVAEAEKKISSSSKGFFSQFTGG--N-KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLC 82 (186)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~ 82 (186)
++|++++++|+|+++ ++.||| .+|++ + ++++|+++|.++|.+|...|++++|+++|.++++++.+.|++...+.+
T Consensus 2 ~~a~~~~~~a~k~~~-~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~ 79 (292)
T 1qqe_A 2 SDPVELLKRAEKKGV-PSSGFM-KLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNT 79 (292)
T ss_dssp CCHHHHHHHHHHHSS-CCCTHH-HHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHhC-cCCCcc-hhcCCCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 589999999999999 546888 57764 4 499999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHH
Q psy5288 83 FVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANK 161 (186)
Q Consensus 83 ~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~ 161 (186)
|.++|.+|... ++++|+.+|++|++++...|++..++.++.++|.+|..++|++++|+.+|++|+++++..+.+.....
T Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~ 159 (292)
T 1qqe_A 80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 99999999987 99999999999999999999999999999999999998239999999999999999998877777778
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 162 CLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 162 ~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++.++|.+|..+|+|++|+++|++
T Consensus 160 ~~~~lg~~~~~~g~~~~A~~~~~~ 183 (292)
T 1qqe_A 160 CFIKCADLKALDGQYIEASDIYSK 183 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999999986
No 2
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.95 E-value=1.5e-26 Score=183.35 Aligned_cols=177 Identities=25% Similarity=0.301 Sum_probs=164.5
Q ss_pred CCchH-HhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHH
Q psy5288 1 MADNE-QKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDA 79 (186)
Q Consensus 1 ~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~a 79 (186)
|+++- .+|.+++++|++.++ .+||. .++++++|+++|.++|.+|...|++++|+++|.++++++.+++++..+
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~---~~~~~---~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 75 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLK---TSFMK---WKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHA 75 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHC---CCSSS---CSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CccchHHHHHHHHHHHHHHcc---ccccC---CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 55544 899999999999999 56533 268999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHH
Q psy5288 80 GLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSS 158 (186)
Q Consensus 80 a~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~ 158 (186)
+.+|.++|.+|... ++++|+.+|++|++++...|++...+.++.++|.+|.. |++++|+.+|++|+++++..+++..
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~--g~~~~A~~~~~~Al~~~~~~~~~~~ 153 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP--LDLSKAVHLYQQAAAVFENEERLRQ 153 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCChhH
Confidence 99999999999987 99999999999999999999999999999999999975 9999999999999999998888877
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 159 ANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 159 ~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...++.++|.+|..+|+|++|+++|++
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 788999999999999999999999986
No 3
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.89 E-value=5.5e-21 Score=150.19 Aligned_cols=170 Identities=15% Similarity=0.085 Sum_probs=147.8
Q ss_pred hHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH--------------------HHHHHhcCCHHHHHHHH
Q psy5288 4 NEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA--------------------GNLFKLGKKWNDGGNAF 63 (186)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a--------------------g~~~~~~g~~~~A~~~y 63 (186)
..++|.+++.+|...+. ..|+|++|+++|.++ |.+|..+|++++|+.+|
T Consensus 32 ~~~~A~~~~~~a~~~~~-----------~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQAATIYR-----------LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH-----------HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36788888888877665 235666666666554 66788899999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy5288 64 LQAGTLHLKNNNKHDAGLCFVDAANCYKK--SNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAID 141 (186)
Q Consensus 64 ~~a~~~~~~~~~~~~aa~~~~~a~~~y~~--~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~ 141 (186)
.++++++...|++..++.++.++|.+|.. .++++|+.+|++|+++.+..++....+.++.++|.+|..+ |++++|+.
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~ 179 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD-GQYIEASD 179 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh-CCHHHHHH
Confidence 99999999999999999999999999987 4999999999999999999999888899999999999995 99999999
Q ss_pred HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 142 HYQHAADCYAGEENK-SSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 142 ~y~kA~~l~~~~~~~-~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+|++++.+.+..... .....++.++|.++..+|++++|+.+|++
T Consensus 180 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 180 IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998876543 34456889999999999999999999986
No 4
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.88 E-value=1.3e-20 Score=148.96 Aligned_cols=150 Identities=14% Similarity=0.124 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGR 114 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~ 114 (186)
+...++..|.++|.+|..+|++++|+.+|.++++++...|++...+.++.++|.+|...++++|+.+|++|++++...++
T Consensus 71 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~ 150 (307)
T 2ifu_A 71 SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEER 150 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Confidence 33344444555577788889999999999999999999999999999999999999878999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 115 FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 115 ~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
....+.++.++|.+|.. +|++++|+.+|++++.+.++.+.+.....++.++|.++..+|++++|+.+|++
T Consensus 151 ~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 151 LRQAAELIGKASRLLVR-QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999 59999999999999999998776666667899999999999999999999986
No 5
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.84 E-value=1.2e-18 Score=140.81 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=136.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNN-KHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~-~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~ 112 (186)
+....+..+...|.+|...|++++|+++|.++++++.+.++ ....+.++..+|.+|... ++++|+.+|++|+++.+..
T Consensus 138 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 217 (383)
T 3ulq_A 138 DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE 217 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence 44455566666688999999999999999999999999887 778889999999999987 9999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 113 GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 113 ~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++....+.++.++|.+|..+ |++++|+.+|++|+.+.+..+..+....++.++|.+|..+|++++|+++|++
T Consensus 218 ~~~~~~~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (383)
T 3ulq_A 218 KQPQLMGRTLYNIGLCKNSQ-SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999995 9999999999999999998777444468999999999999999999999976
No 6
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.84 E-value=2.8e-18 Score=120.55 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=141.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~ 112 (186)
++....+..+...|.++...|++++|+.+|.+++++....+++...+..+..+|.+|... ++++|+.++++++++....
T Consensus 3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 577788889999999999999999999999999999999999999999999999999887 9999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 113 GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 113 ~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+++...+.++..+|.++... |++++|+.++++++.+.+..+.+.....++..+|.+|...|++++|++++++
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999995 9999999999999999988888877788999999999999999999999875
No 7
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.84 E-value=1.7e-18 Score=140.02 Aligned_cols=167 Identities=20% Similarity=0.172 Sum_probs=143.9
Q ss_pred HhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC-hhHHHHHHH
Q psy5288 6 QKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNN-KHDAGLCFV 84 (186)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~-~~~aa~~~~ 84 (186)
.+|.....+|.+.++ ..++....+..+...|.+|...|++++|+.++.++++++.+.++ ....+.++.
T Consensus 118 ~~A~~~~~~al~~~~-----------~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 118 VEAIGYYREAEKELP-----------FVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHHHHHTTGG-----------GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-----------hCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 445555555555544 11344555566666688999999999999999999999998876 567889999
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHH
Q psy5288 85 DAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCL 163 (186)
Q Consensus 85 ~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~ 163 (186)
.+|.+|... ++++|+.+|++|+++....++....+.++.++|.+|..+ |++++|+.+|++|+.+++..+++.. ..++
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~-~~~~ 264 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS-GDDQMAVEHFQKAAKVSREKVPDLL-PKVL 264 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHCGGGH-HHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhCChhH-HHHH
Confidence 999999987 999999999999999999999999999999999999995 9999999999999999988777766 6899
Q ss_pred HHHHHHHHhccCHHHHHHHHHh
Q psy5288 164 IKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 164 ~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.++|.+|..+|++++|+++|++
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999976
No 8
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.80 E-value=3.2e-17 Score=120.31 Aligned_cols=147 Identities=9% Similarity=0.091 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC-Ch
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG-RF 115 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~-~~ 115 (186)
.....+...|.++...|++++|..+|.+++.+....+++...+.++.++|.+|... ++++|+.++++++++....+ ++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 34567788899999999999999999999999999999999999999999999887 99999999999999999998 56
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...+.++.++|.++... |++++|+.++++++.+.+..+.+.....++.++|.++...|++++|+++|++
T Consensus 104 ~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 104 LAASANAYEVATVALHF-GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 68899999999999995 9999999999999999988888877788899999999999999999999875
No 9
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.80 E-value=7.9e-18 Score=131.86 Aligned_cols=168 Identities=8% Similarity=-0.025 Sum_probs=138.5
Q ss_pred HHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH--------------------HHHHHhcCCHHHHHHHHH
Q psy5288 5 EQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA--------------------GNLFKLGKKWNDGGNAFL 64 (186)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a--------------------g~~~~~~g~~~~A~~~y~ 64 (186)
+.....+...+...+. .++|++|.+.|.++ |.++...|++++|+++|.
T Consensus 72 ~~~~~~l~~~~~~~~~------------~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 139 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCK------------QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELK 139 (293)
T ss_dssp HHHHHHHHHHHHHHHH------------TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH------------hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3445555666665555 35777777776543 556778899999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHHHhcCCHHHHHHH
Q psy5288 65 QAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIM-VAKHHENIAEIYEKELEDQEKAIDH 142 (186)
Q Consensus 65 ~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~-~a~~~~~lg~~y~~~lg~~~~Ai~~ 142 (186)
+++++.....++...+.++.++|.+|... ++++|+.+|++|+++....++... ...++.++|.+|..+ |+|++|+.+
T Consensus 140 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~-~~y~~Al~~ 218 (293)
T 2qfc_A 140 KLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD-SRYEESLYQ 218 (293)
T ss_dssp HHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH-hhHHHHHHH
Confidence 99998877777777888999999999987 999999999999999988765443 448999999999995 999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHH-HHHHHh
Q psy5288 143 YQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKA-IKLYEQ 185 (186)
Q Consensus 143 y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A-~~~~~~ 185 (186)
|++|+.+.++.+.......++.++|.+|..+|++++| ..+|++
T Consensus 219 ~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 9999999877666656678999999999999999999 676764
No 10
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.80 E-value=1.1e-17 Score=131.13 Aligned_cols=144 Identities=8% Similarity=-0.030 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-CChhHH
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM-GRFIMV 118 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~-~~~~~~ 118 (186)
.++...|.++...|++++|+.+|.+++++....+++...+.++.++|.+|... ++++|+.+|++|+++.... ++....
T Consensus 116 ~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (293)
T 3u3w_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence 34444577777888999999999999998777777778888999999999887 9999999999999999888 788899
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcc-CHHHHHHHHHh
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTD-HLDKAIKLYEQ 185 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g-~~~~A~~~~~~ 185 (186)
+.++.++|.+|..+ |+|++|+.++++|+++.++.+.....+.++.++|.+|..+| ++++|+++|++
T Consensus 196 ~~~~~nlg~~y~~~-~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 196 VKVRYNHAKALYLD-SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 99999999999995 99999999999999999887777777789999999999999 57999999976
No 11
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.79 E-value=9.5e-17 Score=129.71 Aligned_cols=142 Identities=15% Similarity=0.117 Sum_probs=121.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy5288 43 YVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKH 121 (186)
Q Consensus 43 y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~ 121 (186)
+...|.+|..+|++++|+++|.+++++..+.+++...+.++.++|.+|... ++++|+.++++|+++....++.+..+.+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 333467788899999999999999999999999999999999999999987 9999999999999999999986677999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHH-----------------------------------HHHHHHHH
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSS-----------------------------------ANKCLIKI 166 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~-----------------------------------~~~~~~~l 166 (186)
+.++|.+|... |++++|+.++++|+.+.++.+++.. ...++..+
T Consensus 267 ~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l 345 (383)
T 3ulq_A 267 YFLITQIHYKL-GKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 99999999995 9999999999999998765544333 22356677
Q ss_pred HHHHHhccCHHHHHHHHHh
Q psy5288 167 ANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 167 a~~y~~~g~~~~A~~~~~~ 185 (186)
|.+|...|++++|+++|++
T Consensus 346 a~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 7777777777777777764
No 12
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.78 E-value=8.9e-17 Score=130.06 Aligned_cols=168 Identities=15% Similarity=0.193 Sum_probs=150.0
Q ss_pred HHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH------------------HHHHHhcCCHHHHHHHHHHH
Q psy5288 5 EQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA------------------GNLFKLGKKWNDGGNAFLQA 66 (186)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a------------------g~~~~~~g~~~~A~~~y~~a 66 (186)
+..+..+...|...+. .|++++|+.+|.++ |.+|...|++++|+.+|.++
T Consensus 45 ~~~~~~l~~~g~~~~~------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (411)
T 4a1s_A 45 SSMCLELALEGERLCN------------AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD 112 (411)
T ss_dssp HHHHHHHHHHHHHHHH------------TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH------------hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4666677777766666 25778887777766 56788999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC----------
Q psy5288 67 GTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELED---------- 135 (186)
Q Consensus 67 ~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~---------- 135 (186)
+.+....++....+.++..+|.+|... ++++|+.+|++++++....++....+.++..+|.+|... |+
T Consensus 113 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~ 191 (411)
T 4a1s_A 113 LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK-GKHLGQRNPGKF 191 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHHHHHHSTTCC
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc-Ccccccccchhh
Confidence 999999999999999999999999887 999999999999999999999999999999999999995 99
Q ss_pred -------HHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 136 -------QEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 136 -------~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+++|+.+|++++.+.+..+.+.....++.++|.+|...|++++|+++|++
T Consensus 192 ~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 192 GDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999999988877777778999999999999999999999975
No 13
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.77 E-value=2.2e-16 Score=126.75 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=141.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~ 112 (186)
++.......+...|.+|...|++++|+.+|.+++++....+++...+.++..+|.+|... ++++|+.++++++++....
T Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 456777788999999999999999999999999999999999988899999999999887 9999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 113 GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 113 ~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++....+.++..+|.+|... |++++|+.+|++++.+.+..+.+.....++..+|.+|...|++++|+++|++
T Consensus 261 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 261 KDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999995 9999999999999999998888888888999999999999999999999976
No 14
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.76 E-value=3e-16 Score=122.05 Aligned_cols=145 Identities=17% Similarity=0.199 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHH
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMV 118 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~ 118 (186)
...+...|.++...|++++|++++.+++.+....+++...+..+..+|.+|... ++++|+.++++++++....++....
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 344445577899999999999999999999999999999999999999999887 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHH
Q psy5288 119 AKHHENIAEIYEKELED--------------------QEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDK 178 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~--------------------~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~ 178 (186)
+.++..+|.+|... |+ +++|+.++++++.+.+..+.+.....++.++|.+|...|++++
T Consensus 123 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 201 (338)
T 3ro2_A 123 ARALYNLGNVYHAK-GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 201 (338)
T ss_dssp HHHHHHHHHHHHHH-HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHc-CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999999995 99 9999999999999988877777777899999999999999999
Q ss_pred HHHHHHh
Q psy5288 179 AIKLYEQ 185 (186)
Q Consensus 179 A~~~~~~ 185 (186)
|+++|++
T Consensus 202 A~~~~~~ 208 (338)
T 3ro2_A 202 AVIAHEQ 208 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 15
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.76 E-value=5.4e-17 Score=131.16 Aligned_cols=143 Identities=15% Similarity=0.092 Sum_probs=132.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC-hhHHH
Q psy5288 42 LYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGR-FIMVA 119 (186)
Q Consensus 42 ~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~-~~~~a 119 (186)
++...|..+...|++++|+.+|.+++++....+++...+.++.++|.+|... ++++|+.++++|++++...++ ....+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 4455688889999999999999999999999999999999999999999887 999999999999999999887 66899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 120 KHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.++.++|.+|... |++++|+++|++|+++.++.+++.....++.++|.+|..+|++++|+++|++
T Consensus 183 ~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 183 QSLFVIAGNYDDF-KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999994 9999999999999999998888888888999999999999999999999976
No 16
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.76 E-value=1.7e-16 Score=121.04 Aligned_cols=173 Identities=18% Similarity=0.213 Sum_probs=145.9
Q ss_pred chHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc--CChhHHH
Q psy5288 3 DNEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKN--NNKHDAG 80 (186)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~--~~~~~aa 80 (186)
+++.+|..+..+|-+.+. .. ...+...-...+...|.+|...|++++|+.+|.+++++.... ++....+
T Consensus 15 ~~~~~A~~~~~~al~~~~---~~------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLE---KT------SGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVA 85 (283)
T ss_dssp SCSSSHHHHHHHHHHHHH---HH------HCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHHH---Hh------cCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHH
Confidence 345788889999988776 11 112445667788889999999999999999999999998876 6667778
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CC
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM--GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE--EN 155 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~--~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~--~~ 155 (186)
..+..+|.+|... ++++|+.+|++++++.... .+.+..+.++.++|.+|... |++++|+.+|++++.++... ..
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ-GKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCC
Confidence 8999999999887 9999999999999998776 33477888999999999995 99999999999999997653 23
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 156 KSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 156 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
......++.++|.+|...|++++|+++|++
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 194 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKE 194 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444567899999999999999999999976
No 17
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.76 E-value=3.4e-16 Score=125.62 Aligned_cols=153 Identities=12% Similarity=0.116 Sum_probs=136.8
Q ss_pred CCCCHHHHHHHHHHH--------------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHh
Q psy5288 32 GGNKTDEAIDLYVRA--------------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYK 91 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~ 91 (186)
..|++++|..+|.++ |.+|...|++++|+.+|.+++++....+++...+..+..+|.+|.
T Consensus 59 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 138 (406)
T 3sf4_A 59 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 138 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 456788887777665 567888999999999999999999999988888999999999998
Q ss_pred cC-C--------------------HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy5288 92 KS-N--------------------PAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCY 150 (186)
Q Consensus 92 ~~-~--------------------~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~ 150 (186)
.. + +++|+.++++++.+....++....+.++..+|.+|... |++++|+.+|++++.+.
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TBHHHHHHHHHHHHHHH
T ss_pred HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHH
Confidence 76 7 99999999999999999999999999999999999995 99999999999999999
Q ss_pred hccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 151 AGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 151 ~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++.+.+.....++.++|.+|...|++++|+.+|++
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 98877777778999999999999999999999875
No 18
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.76 E-value=3.9e-16 Score=121.41 Aligned_cols=151 Identities=15% Similarity=0.105 Sum_probs=140.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~ 112 (186)
++...-...+...|.++...|++++|..++.+++++....+++...+..+..+|.+|... ++++|+.++++++++....
T Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (338)
T 3ro2_A 177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 256 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Confidence 355666778888899999999999999999999999999999988899999999999876 9999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 113 GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 113 ~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++....+.++..+|.+|... |++++|+.++++++.+.+..+.+.....++..+|.+|...|++++|+++|++
T Consensus 257 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 257 KDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999999999995 9999999999999999998887877788999999999999999999999976
No 19
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=7.2e-16 Score=119.47 Aligned_cols=147 Identities=20% Similarity=0.234 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc--
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKN--NNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM-- 112 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~--~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~-- 112 (186)
.....+...|.+|...|++++|..+|.+++.+..+. ++.......+..+|.+|... ++++|+.++++++++....
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 146 (311)
T 3nf1_A 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC
Confidence 334455555778889999999999999999998876 66677788899999999887 9999999999999999887
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 113 GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE--ENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 113 ~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++....+.++..+|.++... |++++|+.+|++++.++... +.......++..+|.+|...|++++|+++|++
T Consensus 147 ~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 147 KDHPDVAKQLNNLALLCQNQ-GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77788899999999999995 99999999999999997764 33455567999999999999999999999976
No 20
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.75 E-value=7.6e-16 Score=124.56 Aligned_cols=150 Identities=11% Similarity=0.069 Sum_probs=139.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG 113 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~ 113 (186)
+...-...+...|.++...|++++|+.+|.+++++....++....+..+..+|.+|... ++++|+.++++++++....+
T Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 44556667788899999999999999999999999999988888889999999999887 99999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 114 RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 114 ~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+....+.++..+|.+|... |++++|+.+|++++.+.+..+.+.....++..+|.+|...|++++|+++|++
T Consensus 298 ~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 298 EREVEAQSCYSLGNTYTLL-HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999999995 9999999999999999998887777788999999999999999999999976
No 21
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.70 E-value=4.3e-15 Score=113.25 Aligned_cols=148 Identities=18% Similarity=0.114 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNN--KHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM- 112 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~--~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~- 112 (186)
......+...|.+|...|++++|+.+|.+++++....+. .......+.++|.+|... ++++|+.++++++++....
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 161 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 344455556677889999999999999999999887633 356678888999999887 9999999999999998766
Q ss_pred -CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC-------------------------------------
Q psy5288 113 -GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE------------------------------------- 154 (186)
Q Consensus 113 -~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~------------------------------------- 154 (186)
++.+..+.++..+|.+|..+ |++++|+.+|++++.+.+...
T Consensus 162 ~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (283)
T 3edt_B 162 GPDDPNVAKTKNNLASCYLKQ-GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSW 240 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC----------
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 44677888999999999995 999999999999999865421
Q ss_pred ------ChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 155 ------NKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 155 ------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+.....++..+|.+|...|++++|+++|++
T Consensus 241 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 241 YKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2345557899999999999999999999986
No 22
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.4e-15 Score=122.57 Aligned_cols=142 Identities=8% Similarity=0.031 Sum_probs=129.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy5288 43 YVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKH 121 (186)
Q Consensus 43 y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~ 121 (186)
+.+.|.+|...|++++|.++|.+++.+..+.++..........++.++... ++++|+.++++++.+....++....+.+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445578999999999999999999999999888777778888888888766 8999999999999999999998899999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+.++|.+|..+ |+|++|+.++++++......++......++..++.+|..+|+|++|..+|++
T Consensus 138 ~~~la~~~~~~-g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 200 (434)
T 4b4t_Q 138 SIKLATLHYQK-KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTA 200 (434)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHc-cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 99999999995 9999999999999999988777777788999999999999999999999875
No 23
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.68 E-value=1.6e-14 Score=105.81 Aligned_cols=155 Identities=14% Similarity=0.203 Sum_probs=129.1
Q ss_pred HhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC-ChhHHHHHHH
Q psy5288 6 QKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNN-NKHDAGLCFV 84 (186)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~-~~~~aa~~~~ 84 (186)
++|.++..+|-.... ..++.......+...|.++...|++++|..++.+++.+....+ ++...+.++.
T Consensus 43 ~~A~~~~~~al~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 111 (203)
T 3gw4_A 43 DEARASFQALQQQAQ-----------KSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAY 111 (203)
T ss_dssp HHHHHHHHHHHHHHH-----------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------HcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 445555555555444 1234445555566667889999999999999999999999998 5667888899
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHH
Q psy5288 85 DAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCL 163 (186)
Q Consensus 85 ~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~ 163 (186)
++|.+|... ++++|+.++++++++....++....+.++..+|.++... |++++|+.++++|+++.+..+++.....+.
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 190 (203)
T 3gw4_A 112 EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE-KNLLEAQQHWLRARDIFAELEDSEAVNELM 190 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999876 999999999999999999999999999999999999995 999999999999999999999888888888
Q ss_pred HHHHHHHHh
Q psy5288 164 IKIANYSAL 172 (186)
Q Consensus 164 ~~la~~y~~ 172 (186)
..++.+...
T Consensus 191 ~~~~~~~~~ 199 (203)
T 3gw4_A 191 TRLNGLEHH 199 (203)
T ss_dssp HHHHTTCC-
T ss_pred hcccchhhc
Confidence 887766433
No 24
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=7.6e-15 Score=113.66 Aligned_cols=151 Identities=14% Similarity=0.091 Sum_probs=134.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNN--NKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHT 110 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~--~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~ 110 (186)
++....+..+...|.++...|++++|+.+|.+++++....+ +....+.++..+|.+|... ++++|+.++++++++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45567788899999999999999999999999999988876 5566778888999999887 99999999999999998
Q ss_pred Hc--CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 111 DM--GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE--ENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 111 ~~--~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.. ++....+.++..+|.+|... |++++|+.+|++++.+.... +.+.....++.++|.+|...|++++|+++|++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 87 77788899999999999995 99999999999999998664 44455668999999999999999999999976
No 25
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=8.3e-15 Score=106.35 Aligned_cols=88 Identities=19% Similarity=0.245 Sum_probs=66.2
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHH
Q psy5288 85 DAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCL 163 (186)
Q Consensus 85 ~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~ 163 (186)
..|.++... +++.|+..+.+++.+.... ...+..+|.+|... |++++|+.+|++++.+.+.. ..++
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~ 144 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTVY------ADAYYKLGLVYDSM-GEHDKAIEAYEKTISIKPGF------IRAY 144 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHh-CCchhHHHHHHHHHHhcchh------hhHH
Confidence 344444433 5555555555555443322 33678899999995 99999999999999996653 3689
Q ss_pred HHHHHHHHhccCHHHHHHHHHh
Q psy5288 164 IKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 164 ~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.++|.+|..+|++++|+++|++
T Consensus 145 ~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 145 QSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999986
No 26
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.9e-14 Score=106.23 Aligned_cols=162 Identities=16% Similarity=0.086 Sum_probs=128.5
Q ss_pred HHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH-------------HHHHHhcCCHHHHHHHHHHHHHHHH
Q psy5288 5 EQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA-------------GNLFKLGKKWNDGGNAFLQAGTLHL 71 (186)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a-------------g~~~~~~g~~~~A~~~y~~a~~~~~ 71 (186)
+..++.+...|.-.+. .+++++|+++|.++ |.++...|++++|+++|.+++++..
T Consensus 2 ~~~a~~~~~~g~~~~~------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 69 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYK------------ARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGR 69 (258)
T ss_dssp HHHHHHHHHHHHHHHH------------TTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH------------hccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence 4667777777777777 35899999888876 6678999999999999999999987
Q ss_pred HcC-ChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH------H--------------cCChhHHHHHHHHHHHHH
Q psy5288 72 KNN-NKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHT------D--------------MGRFIMVAKHHENIAEIY 129 (186)
Q Consensus 72 ~~~-~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~------~--------------~~~~~~~a~~~~~lg~~y 129 (186)
..+ +.......+..+|.+|... ++++|+.+|++++.+.. . ....+..+.++..+|.++
T Consensus 70 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 70 EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEY 149 (258)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 654 4445578888999999887 99999999999998421 1 113345566788889998
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 130 EKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 130 ~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
... |++++|+.+|++++.+.+.. ..++.++|.+|...|++++|+.+|++
T Consensus 150 ~~~-~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 150 FTK-SDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHh-cCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 884 99999999999998886543 36778888888888888888888865
No 27
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.65 E-value=3.4e-15 Score=130.93 Aligned_cols=152 Identities=18% Similarity=0.208 Sum_probs=119.8
Q ss_pred chHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHH
Q psy5288 3 DNEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGT 68 (186)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~ 68 (186)
+.|..++.+.--|.-... .|++++|+.+|.++ |.+|..+|++++|+.+|.++++
T Consensus 4 s~P~~a~al~nLG~~~~~------------~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~ 71 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKRE------------QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71 (723)
T ss_dssp --CHHHHHHHHHHHHHHH------------TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555656555554444 35888888888887 6678899999999999999998
Q ss_pred HHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5288 69 LHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAA 147 (186)
Q Consensus 69 ~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~ 147 (186)
+ +|.. +.+|.++|.+|... ++++|+++|++|+++.... +..+.++|.+|..+ |++++|+.+|++|+
T Consensus 72 l-----~P~~-~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~------~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al 138 (723)
T 4gyw_A 72 I-----SPTF-ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF------ADAHSNLASIHKDS-GNIPEAIASYRTAL 138 (723)
T ss_dssp H-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred h-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 8 4443 45677899999877 8999999999998875433 45789999999984 99999999999999
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 148 DCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++.++. ...+.++|.+|..+|++++|++.|++
T Consensus 139 ~l~P~~------~~a~~~L~~~l~~~g~~~~A~~~~~k 170 (723)
T 4gyw_A 139 KLKPDF------PDAYCNLAHCLQIVCDWTDYDERMKK 170 (723)
T ss_dssp HHCSCC------HHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HhCCCC------hHHHhhhhhHHHhcccHHHHHHHHHH
Confidence 986653 36888999999999999999988875
No 28
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.63 E-value=9.4e-15 Score=114.28 Aligned_cols=146 Identities=10% Similarity=-0.002 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhH
Q psy5288 39 AIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIM 117 (186)
Q Consensus 39 A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~ 117 (186)
-...+...+..+...|++++|++++.++++..............+..+|.+|... ++++|+.++++|+++.....+...
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 3445556677888999999999999999887544333334455566788888876 999999999999998887778888
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENK-SSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~-~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+.++.++|.+|... |++++|+.+|++|+++++..... .....++.++|.+|..+|+|++|+++|++
T Consensus 154 ~~~~~~~lg~~y~~~-~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k 221 (293)
T 2qfc_A 154 NLYIENAIANIYAEN-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 899999999999995 99999999999999988765433 33337999999999999999999999986
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=1.1e-14 Score=109.37 Aligned_cols=135 Identities=12% Similarity=0.095 Sum_probs=91.1
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhc-----------CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLG-----------KKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDA 86 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~-----------g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a 86 (186)
..|++++|+..|.++ |.++... |++++|+.+|.+++++ +|... ..+..+
T Consensus 51 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~~-~~~~~l 124 (217)
T 2pl2_A 51 KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPRYA-PLHLQR 124 (217)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTTCH-HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----CcccH-HHHHHH
Confidence 346777777777766 4566667 7888888888888777 34433 455677
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHH
Q psy5288 87 ANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIK 165 (186)
Q Consensus 87 ~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~ 165 (186)
|.+|... ++++|+.+|++++++. ++ +.++.++|.+|... |++++|+..|++++.+.+.. ..++.+
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~~---~~----~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~P~~------~~~~~~ 190 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALALE---DT----PEIRSALAELYLSM-GRLDEALAQYAKALEQAPKD------LDLRVR 190 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---CC----HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTC------HHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcc---cc----hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------hHHHHH
Confidence 8888766 8888888888888876 33 44678889998884 99999999999998886643 367788
Q ss_pred HHHHHHhccCHHHHHHHHHhC
Q psy5288 166 IANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 166 la~~y~~~g~~~~A~~~~~~~ 186 (186)
+|.++...|++++|++.|+++
T Consensus 191 la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 191 YASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTC--------------
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 899999999999999888764
No 30
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.63 E-value=1.8e-14 Score=112.61 Aligned_cols=122 Identities=15% Similarity=0.118 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKN-NNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGR 114 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~-~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~ 114 (186)
...+.++...|.+|...|++++|+.+|.+++++.... ++....+.++.++|.+|... ++++|+.++++|+++....++
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~ 231 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence 3445566666889999999999999999999999987 67778888999999999987 999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhccCChHHH
Q psy5288 115 FIMVAKHHENIAEIYEKELE-DQEKAIDHYQHAADCYAGEENKSSA 159 (186)
Q Consensus 115 ~~~~a~~~~~lg~~y~~~lg-~~~~Ai~~y~kA~~l~~~~~~~~~~ 159 (186)
....+.++.++|.+|.. +| .+++|+.+|++|+.+++..+++...
T Consensus 232 ~~~~~~~~~~lg~~~~~-~g~~~~~A~~~~~~Al~i~~~~~~~~~~ 276 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRK-LEYEEAEIEDAYKKASFFFDILEMHAYK 276 (293)
T ss_dssp CTTHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCTGGG
T ss_pred HHHHHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999 49 5799999999999999987766544
No 31
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.63 E-value=6.3e-14 Score=96.89 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM- 112 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~- 112 (186)
...+++..+.+.|+.+...|++++|+++|.+++++ +|.. +.+|.++|.+|... ++++|+.+|++++++.+..
T Consensus 3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~-~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSN-ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 45678888999999999999999999999999998 4544 45678999999987 9999999999999999877
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 113 GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 113 ~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
..+...+.++.++|.++... |++++|+++|++|+.+.++
T Consensus 77 ~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 77 ADYKLIAKAMSRAGNAFQKQ-NDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCcC
Confidence 46778899999999999994 9999999999999997653
No 32
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.62 E-value=1.4e-13 Score=96.16 Aligned_cols=119 Identities=10% Similarity=0.101 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG 113 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~ 113 (186)
+.......+...|.++...|++++|..+|.+++++....+++...+..+..+|.+|... ++++|+.++++++++....+
T Consensus 44 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 123 (164)
T 3ro3_A 44 DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 33444445555578899999999999999999999999999998899999999999887 99999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q psy5288 114 RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE 154 (186)
Q Consensus 114 ~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~ 154 (186)
+....+.++..+|.+|... |++++|+.++++++.+.++.+
T Consensus 124 ~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~ 163 (164)
T 3ro3_A 124 DRIGEGRACWSLGNAYTAL-GNHDQAMHFAEKHLEISREVG 163 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTC-
T ss_pred chHhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999995 999999999999999987653
No 33
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.62 E-value=3e-13 Score=108.39 Aligned_cols=144 Identities=12% Similarity=0.042 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh--h
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF--I 116 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~--~ 116 (186)
...+...|.++...|++++|...+.+++.+....+++...+.++..+|.++... ++++|+.++++++.+....+.. .
T Consensus 53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 132 (373)
T 1hz4_A 53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 132 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc
Confidence 344555677888999999999999999999999999988888899999999876 9999999999999999988776 6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 117 MVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..+.++..+|.++... |++++|..++++++.+.+..+.+. ...++..+|.++...|++++|+.++++
T Consensus 133 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~ 199 (373)
T 1hz4_A 133 MHEFLVRIRAQLLWAW-ARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNR 199 (373)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7888999999999995 999999999999999988766544 347889999999999999999999875
No 34
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.61 E-value=6e-14 Score=107.51 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=128.4
Q ss_pred HHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH-----------------HHHHHhcCCHHHHHHHHHHHH
Q psy5288 5 EQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA-----------------GNLFKLGKKWNDGGNAFLQAG 67 (186)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a-----------------g~~~~~~g~~~~A~~~y~~a~ 67 (186)
+..++.++..|...+. .|+|++|++.|.++ |.+|...|++++|+..|.+++
T Consensus 12 ~~~~~~~~~~a~~~~~------------~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 79 (261)
T 3qky_A 12 HSSPQEAFERAMEFYN------------QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFI 79 (261)
T ss_dssp CSSHHHHHHHHHHHHH------------TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH------------hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3556777777777776 35788887777766 678999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHhc--------C-CHHHHHHHHHHHHHHHHHcCChhHHH-----------HHHHHHHH
Q psy5288 68 TLHLKNNNKHDAGLCFVDAANCYKK--------S-NPAEAIKAIERAVEIHTDMGRFIMVA-----------KHHENIAE 127 (186)
Q Consensus 68 ~~~~~~~~~~~aa~~~~~a~~~y~~--------~-~~~~A~~~~~~Al~i~~~~~~~~~~a-----------~~~~~lg~ 127 (186)
+++... .....++..+|.+|.. . ++++|+..|+++++.++.......+. ..+..+|.
T Consensus 80 ~~~p~~---~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~ 156 (261)
T 3qky_A 80 QIYQID---PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAAR 156 (261)
T ss_dssp HHCTTC---TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCC---chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 985221 2345678899999987 6 89999999999999887665433221 22388999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhc----------cCHHHHHHHHHhC
Q psy5288 128 IYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALT----------DHLDKAIKLYEQL 186 (186)
Q Consensus 128 ~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~----------g~~~~A~~~~~~~ 186 (186)
+|... |++++|+..|++++..+++.. .....+..+|.+|..+ |++++|+.+|+++
T Consensus 157 ~~~~~-g~~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 157 LYERR-ELYEAAAVTYEAVFDAYPDTP---WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHCTTST---THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHc-cCHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 99995 999999999999999987643 2346889999999977 9999999999763
No 35
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.60 E-value=3e-14 Score=124.92 Aligned_cols=130 Identities=14% Similarity=0.149 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF 115 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~ 115 (186)
.+-.+.|...|.++..+|++++|+.+|.+++++ +|.. +.++.++|.+|... ++++|+.+|++|+++....
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l-----~P~~-~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~--- 76 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-----FPEF-AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--- 76 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Confidence 344667889999999999999999999999998 4444 45677999999987 9999999999999885443
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+.++.++|.+|..+ |++++|+++|++|+++.++. ...+.++|.+|..+|++++|++.|++
T Consensus 77 ---~~a~~nLg~~l~~~-g~~~~A~~~~~kAl~l~P~~------~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 77 ---ADAYSNMGNTLKEM-QDVQGALQCYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp ---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56899999999995 99999999999999996653 37899999999999999999999986
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=4.2e-14 Score=106.20 Aligned_cols=133 Identities=15% Similarity=0.090 Sum_probs=112.2
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhc------
Q psy5288 33 GNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK------ 92 (186)
Q Consensus 33 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~------ 92 (186)
.|++++|+..|.++ |.++...|++++|+.+|.+++++ +|... ..+..+|.+|..
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~-~a~~~lg~~~~~~~~~~~ 91 (217)
T 2pl2_A 18 LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-----TPRYL-GGYMVLSEAYVALYRQAE 91 (217)
T ss_dssp TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-HHHHHHHHHHHHHHHTCS
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH-HHHHHHHHHHHHhhhhhh
Confidence 46888888888877 67899999999999999999998 45543 456688888764
Q ss_pred ------CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Q psy5288 93 ------SNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKI 166 (186)
Q Consensus 93 ------~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~l 166 (186)
.++++|+.+|++++++.+.. +.++..+|.+|... |++++|+.+|++|+.+. . + ..++.++
T Consensus 92 ~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~-~--~----~~~~~~l 157 (217)
T 2pl2_A 92 DRERGKGYLEQALSVLKDAERVNPRY------APLHLQRGLVYALL-GERDKAEASLKQALALE-D--T----PEIRSAL 157 (217)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-C--C----HHHHHHH
T ss_pred hhcccccCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHc-CChHHHHHHHHHHHhcc-c--c----hHHHHHH
Confidence 47899999999999885433 45789999999995 99999999999999986 2 2 3688999
Q ss_pred HHHHHhccCHHHHHHHHHh
Q psy5288 167 ANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 167 a~~y~~~g~~~~A~~~~~~ 185 (186)
|.+|...|++++|+..|++
T Consensus 158 a~~~~~~g~~~~A~~~~~~ 176 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAK 176 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999986
No 37
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.58 E-value=7.3e-14 Score=104.74 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH---------------HHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 8 ARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA---------------GNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 8 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a---------------g~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
++.+...|...+. .++|++|+++|.++ |.++...|++++|+.+|.+++++
T Consensus 7 ~~~~~~~g~~~~~------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 71 (228)
T 4i17_A 7 PNQLKNEGNDALN------------AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--- 71 (228)
T ss_dssp HHHHHHHHHHHHH------------TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHH------------ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---
Confidence 4566666666665 35888888887776 56788999999999999999986
Q ss_pred cCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy5288 73 NNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGR-FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCY 150 (186)
Q Consensus 73 ~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~-~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~ 150 (186)
+|. ....+..+|.+|... ++++|+.+|++++++.+.... ....+.++..+|.++... |++++|+.+|++++.+.
T Consensus 72 --~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~ 147 (228)
T 4i17_A 72 --NYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA-GNIEKAEENYKHATDVT 147 (228)
T ss_dssp --TCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTSS
T ss_pred --Ccc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh-ccHHHHHHHHHHHHhcC
Confidence 343 456677999999887 999999999999998765432 245567899999999995 99999999999999984
Q ss_pred hccCChHHHHHHHHHHHHHHHhccCH
Q psy5288 151 AGEENKSSANKCLIKIANYSALTDHL 176 (186)
Q Consensus 151 ~~~~~~~~~~~~~~~la~~y~~~g~~ 176 (186)
+. .....++.++|.+|...|+.
T Consensus 148 p~----~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 148 SK----KWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp CH----HHHHHHHHHHHHHHHHHHHH
T ss_pred CC----cccHHHHHHHHHHHHHHHHH
Confidence 43 00246888999999888888
No 38
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.56 E-value=1.2e-13 Score=98.82 Aligned_cols=154 Identities=11% Similarity=0.071 Sum_probs=117.5
Q ss_pred CCchHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHH--------------HHHHHHHHhcCCHHHHHHHHHHH
Q psy5288 1 MADNEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLY--------------VRAGNLFKLGKKWNDGGNAFLQA 66 (186)
Q Consensus 1 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y--------------~~ag~~~~~~g~~~~A~~~y~~a 66 (186)
|.++...+.-+...|.-... .+++++|+.+| ...|.++...|++++|+.++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 68 (186)
T 3as5_A 1 MGNDDIRQVYYRDKGISHAK------------AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68 (186)
T ss_dssp ---CCHHHHHHHHHHHHHHH------------HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCccchhhHHHHHHHHHHHH------------hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555555555555555444 13555555544 44588899999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5288 67 GTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH 145 (186)
Q Consensus 67 ~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~k 145 (186)
+++ .+.. ...+..+|.+|... ++++|+.++++++.+.... ..++..+|.++... |++++|+.++++
T Consensus 69 ~~~-----~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~ 135 (186)
T 3as5_A 69 LAD-----APDN-VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------FNVRFRLGVALDNL-GRFDEAIDSFKI 135 (186)
T ss_dssp HHH-----CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred Hhc-----CCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh------HHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence 987 2322 45677888888766 9999999999999874432 45788999999995 999999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 146 AADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 146 A~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++.+.+.. ..++..+|.++...|++++|+++|++
T Consensus 136 ~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 136 ALGLRPNE------GKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCccc------hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99986543 36889999999999999999999975
No 39
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.55 E-value=7.7e-14 Score=104.63 Aligned_cols=132 Identities=13% Similarity=0.137 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHH
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNK-HDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMV 118 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~-~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~ 118 (186)
+.+...|.++...|++++|+++|.+++++. + ... ..+..+|.+|... ++++|+.+|++++++... -
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~ 75 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT-----NNQDS-VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------L 75 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----TTCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------H
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcc-----CCCCc-HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------h
Confidence 678888999999999999999999999983 3 333 4455699999887 999999999999865433 4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE-NKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++..+|.+|..+ |++++|+.+|++++.+.++.. .......++.++|.++...|++++|++.|++
T Consensus 76 ~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 76 ANAYIGKSAAYRDM-KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 56899999999995 999999999999999987642 1122336799999999999999999999986
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=5.8e-13 Score=100.30 Aligned_cols=140 Identities=19% Similarity=0.212 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC-Ch
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG-RF 115 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~-~~ 115 (186)
..++.+...|.++...|++++|+.+|.+++++. .+ ..++..+|.+|... ++++|+.++++++++....+ +.
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch
Confidence 346778889999999999999999999999985 22 46788999999877 99999999999999998874 66
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC--------------------ChHHHHHHHHHHHHHHHhccC
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE--------------------NKSSANKCLIKIANYSALTDH 175 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~--------------------~~~~~~~~~~~la~~y~~~g~ 175 (186)
...+.++..+|.+|... |++++|+.+|++++.+.+... ..+....++..+|.++...|+
T Consensus 76 ~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKL-GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 67788999999999994 999999999999999643211 223345788999999999999
Q ss_pred HHHHHHHHHh
Q psy5288 176 LDKAIKLYEQ 185 (186)
Q Consensus 176 ~~~A~~~~~~ 185 (186)
+++|+++|++
T Consensus 155 ~~~A~~~~~~ 164 (258)
T 3uq3_A 155 WPNAVKAYTE 164 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999976
No 41
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.55 E-value=1.6e-13 Score=109.49 Aligned_cols=140 Identities=12% Similarity=0.134 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHH
Q psy5288 33 GNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAE 97 (186)
Q Consensus 33 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~ 97 (186)
.|++++|+.+|.++ |.++...|++++|+.+|.+++++. |.. ...+..+|.+|... ++++
T Consensus 78 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~~~~~l~~~~~~~g~~~~ 151 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-----PNN-LKALMALAVSYTNTSHQQD 151 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCC-HHHHHHHHHHHHccccHHH
Confidence 35777777777766 556777888888888888887762 222 33455666666554 6666
Q ss_pred HHHHHHHHHHHHHHcCChh--------------------------------------H--HHHHHHHHHHHHHHhcCCHH
Q psy5288 98 AIKAIERAVEIHTDMGRFI--------------------------------------M--VAKHHENIAEIYEKELEDQE 137 (186)
Q Consensus 98 A~~~~~~Al~i~~~~~~~~--------------------------------------~--~a~~~~~lg~~y~~~lg~~~ 137 (186)
|+.+|++++++........ . -+.++..+|.+|... |+++
T Consensus 152 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~-g~~~ 230 (365)
T 4eqf_A 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS-GEFN 230 (365)
T ss_dssp HHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH-TCHH
T ss_pred HHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC-CCHH
Confidence 6666666655533321110 0 245778888888884 8899
Q ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 138 KAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 138 ~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+|+.+|++++.+.+.. ..++.++|.+|...|++++|+++|++
T Consensus 231 ~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 231 RAIDAFNAALTVRPED------YSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999888888886543 35778888888888888888888875
No 42
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.54 E-value=2.5e-13 Score=93.84 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC-
Q psy5288 77 HDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE- 154 (186)
Q Consensus 77 ~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~- 154 (186)
...+.++.++|.+|... ++++|+.+|++|+++.+.. +.++.++|.+|.. +|++++|+..|++|+++.++..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN------ITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccch
Confidence 45678888999999877 9999999999999985443 5689999999999 5999999999999999988753
Q ss_pred ChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 155 NKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 155 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+...+.++.++|.+|..+|++++|+++|++
T Consensus 78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455667999999999999999999999976
No 43
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.54 E-value=9.4e-13 Score=99.12 Aligned_cols=146 Identities=11% Similarity=0.004 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHH-----------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhc----
Q psy5288 34 NKTDEAIDLYVRA-----------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK---- 92 (186)
Q Consensus 34 ~~~~~A~~~y~~a-----------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~---- 92 (186)
|+|++|++.|.++ |.+|...|++++|+..|.++++.+... ..+..++..+|.+|..
T Consensus 18 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~---~~~~~a~~~~g~~~~~~~~~ 94 (225)
T 2yhc_A 18 GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH---PNIDYVMYMRGLTNMALDDS 94 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---TTHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---CcHHHHHHHHHHHHHhhhhh
Confidence 4777777776665 667889999999999999999885321 2233456677777653
Q ss_pred --------------C-CHHHHHHHHHHHHHHHHHcCChhHH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5288 93 --------------S-NPAEAIKAIERAVEIHTDMGRFIMV-----------AKHHENIAEIYEKELEDQEKAIDHYQHA 146 (186)
Q Consensus 93 --------------~-~~~~A~~~~~~Al~i~~~~~~~~~~-----------a~~~~~lg~~y~~~lg~~~~Ai~~y~kA 146 (186)
. ++++|+..|+++++.++.......+ +.....+|.+|..+ |++++|+..|+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~ 173 (225)
T 2yhc_A 95 ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTER-GAWVAVVNRVEGM 173 (225)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHH
Confidence 2 6899999999999887766543321 22336789999995 9999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 147 ADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 147 ~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
++.+++.. .....+..+|.+|.++|++++|++.++++
T Consensus 174 l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 174 LRDYPDTQ---ATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHSTTSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHCcCCC---ccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 99988642 33478899999999999999999999763
No 44
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.53 E-value=3.2e-13 Score=105.26 Aligned_cols=126 Identities=14% Similarity=0.091 Sum_probs=97.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh---hHHHHHHH
Q psy5288 48 NLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF---IMVAKHHE 123 (186)
Q Consensus 48 ~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~---~~~a~~~~ 123 (186)
.++...|++++|..+|.+++++ +|.. ...+..+|.+|... ++++|+.++++++++....++. +..+.++.
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~-----~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSI-----APED-PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh-----CCCC-hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHH
Confidence 3455555555555555555544 1222 34566778888776 9999999999999998776654 33466899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 124 NIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 124 ~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
.+|.+|... |++++|+.+|++++.+.+.. ..++.++|.+|...|++++|+++|+++
T Consensus 241 ~la~~~~~~-g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 241 NLGHVCRKL-KKYAEALDYHRQALVLIPQN------ASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHh-cCHHHHHHHHHHHHhhCccc------hHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999995 99999999999999987653 268899999999999999999999874
No 45
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.53 E-value=6.9e-15 Score=104.59 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=88.7
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHH
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPA 96 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~ 96 (186)
.++++++|+..|.++ |.+|...|++++|+++|.+++++ +|.. ..++..+|.+|... +++
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p~~-~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QERD-PKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHcCchH
Confidence 346777888777776 66788888888888888888877 3443 34566788888776 788
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHhccCChHHHHHHHHHHHHHHHhccC
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDH-YQHAADCYAGEENKSSANKCLIKIANYSALTDH 175 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~-y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~ 175 (186)
+|+.+|++++++.+.. ..++.++|.+|... |++++|+.. +++|+.+.++. ..++...+.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~aa~~~~~~al~l~P~~------~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQ------KDLVLKIAELLCKN-DVTDGRAKYWVERAAKLFPGS------PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH-CSSSSHHHHHHHHHHHHSTTC------HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHhCc
Confidence 8888888887775433 34677888888874 888776665 47888876653 2566667777777664
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=2.5e-12 Score=94.80 Aligned_cols=153 Identities=13% Similarity=0.065 Sum_probs=106.2
Q ss_pred hHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHH
Q psy5288 4 NEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTL 69 (186)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~ 69 (186)
+|..+.-+...|.-.+. .|++++|+.+|.++ |.++...|++++|+++|.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 71 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMR------------GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI 71 (225)
T ss_dssp CCHHHHHHHHHHHHHHH------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHH------------HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 44455555555555444 24777777776665 55677888888888888888876
Q ss_pred HHHcCChhHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5288 70 HLKNNNKHDAGLCFVDAANCYKK--SNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAA 147 (186)
Q Consensus 70 ~~~~~~~~~aa~~~~~a~~~y~~--~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~ 147 (186)
. +.. ...+..+|.+|.. .++++|+.+++++++ .+..+....++..+|.++... |++++|+.+|++++
T Consensus 72 ~-----~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 72 K-----PDS-AEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQ-GQFGLAEAYLKRSL 140 (225)
T ss_dssp C-----TTC-HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred C-----CCC-hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 2 222 3455677777754 478888888888876 333334456778888888884 88888888888888
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 148 DCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...+.. ..++..+|.+|...|++++|+++|++
T Consensus 141 ~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 141 AAQPQF------PPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhCCCC------chHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 875542 35677888888888888888888765
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=1.7e-12 Score=97.99 Aligned_cols=135 Identities=10% Similarity=0.084 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHH
Q psy5288 34 NKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEA 98 (186)
Q Consensus 34 ~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A 98 (186)
+++++|+++|.++ |.++...|++++|+++|.+++++. +.. ...+..+|.+|... ++++|
T Consensus 51 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~-~~~~~~la~~~~~~g~~~~A 124 (252)
T 2ho1_A 51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-----SRN-ARVLNNYGGFLYEQKRYEEA 124 (252)
T ss_dssp TCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCc-HHHHHHHHHHHHHHhHHHHH
Confidence 4566666666555 456677777777777777777662 222 34555667776655 77777
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHH
Q psy5288 99 IKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDK 178 (186)
Q Consensus 99 ~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~ 178 (186)
+.++++++. .+..+.....+..+|.++... |++++|+.+|++++.+.+.. ..++..+|.+|...|++++
T Consensus 125 ~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 125 YQRLLEASQ----DTLYPERSRVFENLGLVSLQM-KKPAQAKEYFEKSLRLNRNQ------PSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHHHHHTT----CTTCTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHh----CccCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHH
Confidence 777777765 223334455677777777774 77777777777777765432 2466677777777777777
Q ss_pred HHHHHHh
Q psy5288 179 AIKLYEQ 185 (186)
Q Consensus 179 A~~~~~~ 185 (186)
|+.+|++
T Consensus 194 A~~~~~~ 200 (252)
T 2ho1_A 194 ARQYYDL 200 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=2.1e-13 Score=113.94 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=116.1
Q ss_pred CCCCH-HHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC---
Q psy5288 32 GGNKT-DEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS--- 93 (186)
Q Consensus 32 ~~~~~-~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~--- 93 (186)
..+++ ++|+++|.++ |.+|...|++++|+++|.+++++ +|. ...+..+|.+|...
T Consensus 114 ~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~--~~~~~~lg~~~~~~~~~ 186 (474)
T 4abn_A 114 VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-----CKN--KVSLQNLSMVLRQLQTD 186 (474)
T ss_dssp SSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----CCC--HHHHHHHHHHHTTCCCS
T ss_pred hccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCC--HHHHHHHHHHHHHhccC
Confidence 45799 9999999888 66899999999999999999987 455 47888999999763
Q ss_pred -------CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHhccCChHH
Q psy5288 94 -------NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKEL--------EDQEKAIDHYQHAADCYAGEENKSS 158 (186)
Q Consensus 94 -------~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~l--------g~~~~Ai~~y~kA~~l~~~~~~~~~ 158 (186)
++++|+.+|++++++.... +..+..+|.+|.. + |++++|+.+|++|+.+.+.. ..
T Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 256 (474)
T 4abn_A 187 SGDEHSRHVMDSVRQAKLAVQMDVLD------GRSWYILGNAYLS-LYFNTGQNPKISQQALSAYAQAEKVDRKA---SS 256 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHCGGG---GG
T ss_pred ChhhhhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-HHHhhccccchHHHHHHHHHHHHHhCCCc---cc
Confidence 6899999999999886543 4588999999987 7 89999999999999996620 01
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 159 ANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 159 ~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
....+.++|.+|...|++++|++.|++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 247899999999999999999999976
No 49
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.51 E-value=1.7e-12 Score=109.12 Aligned_cols=138 Identities=6% Similarity=-0.155 Sum_probs=120.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHH-cCC-hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc--CChhHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLK-NNN-KHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM--GRFIMVAKH 121 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~-~~~-~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~--~~~~~~a~~ 121 (186)
...++.+|+|++|...|++++++..+ +|. ....+..+.++|.+|... ++++|+.+++++++++... .+++..+..
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34577899999999999999999886 553 346788999999999987 9999999999999999765 478999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGE--ENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+.+||.+|..+ |++++|+.+|++|+++.... .+++.......+++.++..++.|++|...|.+
T Consensus 396 l~nLa~~~~~~-G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 396 VMRAGLTNWHA-GHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996 99999999999999998873 34455567889999999999999999998865
No 50
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.51 E-value=6e-13 Score=106.08 Aligned_cols=141 Identities=12% Similarity=0.077 Sum_probs=109.6
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHH------------------------c
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLK------------------------N 73 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~------------------------~ 73 (186)
..|++++|+.+|.++ |.+|...|++++|+.+|.+++++... .
T Consensus 111 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (365)
T 4eqf_A 111 ENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CC
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh
Confidence 446788888887776 55677788888888888887765332 1
Q ss_pred CChhH----------------HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCH
Q psy5288 74 NNKHD----------------AGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQ 136 (186)
Q Consensus 74 ~~~~~----------------aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~ 136 (186)
|+... ....+..+|.+|... ++++|+.+|++++++.... +.++..+|.+|... |++
T Consensus 191 g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~-g~~ 263 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED------YSLWNRLGATLANG-DRS 263 (365)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCH
T ss_pred hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCH
Confidence 11111 234566778888765 8999999999998875433 45889999999995 999
Q ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 137 EKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 137 ~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++|+.+|++++.+.+.. ..++.++|.+|..+|++++|+++|++
T Consensus 264 ~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 306 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGF------IRSRYNLGISCINLGAYREAVSNFLT 306 (365)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCc------hHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999996653 47889999999999999999999986
No 51
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.50 E-value=5.8e-13 Score=91.99 Aligned_cols=114 Identities=13% Similarity=0.157 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChh
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFI 116 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~ 116 (186)
+-++.+...|+.|...|++++|+++|.+++++ +|.. ...+.++|.+|... ++++|+.+|++++++....
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---- 80 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPEN-AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF---- 80 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh----
Confidence 44566778899999999999999999999998 4544 45677999999887 9999999999999875433
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Q psy5288 117 MVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYS 170 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y 170 (186)
..++.++|.+|.. +|++++|+.+|++++++.+++ ..++.+|+.++
T Consensus 81 --~~a~~~lg~~~~~-~~~~~~A~~~~~~al~l~P~~------~~a~~~l~~~l 125 (126)
T 4gco_A 81 --IKGYIRKAACLVA-MREWSKAQRAYEDALQVDPSN------EEAREGVRNCL 125 (126)
T ss_dssp --HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHC
T ss_pred --hHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCcCC------HHHHHHHHHhc
Confidence 4579999999999 599999999999999997754 25666676653
No 52
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.50 E-value=1.1e-11 Score=99.20 Aligned_cols=179 Identities=9% Similarity=-0.017 Sum_probs=133.5
Q ss_pred hHHhHHHHHHHHHHhhccCCCCc-----c----ccccCCCCHHHHHHHHHHH--------------------HHHHHhcC
Q psy5288 4 NEQKARQLVAEAEKKISSSSKGF-----F----SQFTGGNKTDEAIDLYVRA--------------------GNLFKLGK 54 (186)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~-----~----~~~~~~~~~~~A~~~y~~a--------------------g~~~~~~g 54 (186)
+.++|.++..+|-.... ....+ . ..++..|++++|...+.++ |.++...|
T Consensus 29 ~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G 107 (373)
T 1hz4_A 29 NPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 107 (373)
T ss_dssp CHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC
Confidence 45667777777766554 11110 0 0011347888888777765 55678899
Q ss_pred CHHHHHHHHHHHHHHHHHcCCh--hHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q psy5288 55 KWNDGGNAFLQAGTLHLKNNNK--HDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK 131 (186)
Q Consensus 55 ~~~~A~~~y~~a~~~~~~~~~~--~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~ 131 (186)
++++|..+|.+++.+....+.+ ...+..+..+|.+|... ++++|..++++++++....++.. ...++..+|.++..
T Consensus 108 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~ 186 (373)
T 1hz4_A 108 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLA 186 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHH
Confidence 9999999999999999988776 55677788899998776 99999999999999998887665 55788999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 132 ELEDQEKAIDHYQHAADCYAGEENK-SSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 132 ~lg~~~~Ai~~y~kA~~l~~~~~~~-~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
. |++++|+.++++++.+.+..+.+ ..........+.++...|++++|...+++
T Consensus 187 ~-g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 240 (373)
T 1hz4_A 187 R-GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH 240 (373)
T ss_dssp H-TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 5 99999999999999997765443 22212222345567788888888888765
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=4.7e-13 Score=102.14 Aligned_cols=136 Identities=15% Similarity=0.094 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHH
Q psy5288 33 GNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAE 97 (186)
Q Consensus 33 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~ 97 (186)
.+++++|+..|.++ |.+|...|++++|+++|.++++. .+++...+.++..+|.+|... ++++
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~lg~~~~~~~~~~~ 92 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKAKSADFEYYGKILMKKGQDSL 92 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhHHHHHHHHHHHHHHHcccHHH
Confidence 35788888887777 56788889999999999888872 244555566788888888876 8899
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH-HHHHhccCH
Q psy5288 98 AIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIA-NYSALTDHL 176 (186)
Q Consensus 98 A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la-~~y~~~g~~ 176 (186)
|+.+|++++++..... .++..+|.+|... |++++|+.+|++++.+.+.. ..++.++| .+|. .+++
T Consensus 93 A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 93 AIQQYQAAVDRDTTRL------DMYGQIGSYFYNK-GNFPLAIQYMEKQIRPTTTD------PKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHHHHHHHSTTCT------HHHHHHHHHHHHT-TCHHHHHHHHGGGCCSSCCC------HHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHHHHhcCcccH------HHHHHHHHHHHHc-cCHHHHHHHHHHHhhcCCCc------HHHHHHHHHHHHH-HHHH
Confidence 9999999888755432 3778888888884 88888888888888874332 35777888 4444 4588
Q ss_pred HHHHHHHHh
Q psy5288 177 DKAIKLYEQ 185 (186)
Q Consensus 177 ~~A~~~~~~ 185 (186)
++|+++|++
T Consensus 159 ~~A~~~~~~ 167 (272)
T 3u4t_A 159 VKADSSFVK 167 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888765
No 54
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.49 E-value=2.5e-12 Score=100.07 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=116.6
Q ss_pred cCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CH
Q psy5288 31 TGGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NP 95 (186)
Q Consensus 31 ~~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~ 95 (186)
+..+++++|+.+|.++ |.++...|++++|+.++.+++++. +.. ...+..+|.+|... ++
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-----PDD-AQLWNKLGATLANGNRP 222 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHTTCH
T ss_pred HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCc-HHHHHHHHHHHHHcCCH
Confidence 3557889998888776 667889999999999999999872 332 45677899999877 99
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHH------HHHHHHHHHHH
Q psy5288 96 AEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSS------ANKCLIKIANY 169 (186)
Q Consensus 96 ~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~------~~~~~~~la~~ 169 (186)
++|+.++++++++.... ..++..+|.+|... |++++|+.+|++++.+.+....+.. ...++..+|.+
T Consensus 223 ~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 223 QEALDAYNRALDINPGY------VRVMYNMAVSYSNM-SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 99999999998875432 44788999999995 9999999999999999887433222 35789999999
Q ss_pred HHhccCHHHHHHHHHh
Q psy5288 170 SALTDHLDKAIKLYEQ 185 (186)
Q Consensus 170 y~~~g~~~~A~~~~~~ 185 (186)
|...|++++|..++++
T Consensus 296 ~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHTTCHHHHHHHTTC
T ss_pred HHhcCCHHHHHHHHHH
Confidence 9999999999999875
No 55
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.48 E-value=8.8e-13 Score=104.70 Aligned_cols=141 Identities=11% Similarity=0.125 Sum_probs=98.4
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHH
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPA 96 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~ 96 (186)
..|++++|+.+|.++ |.++...|++++|+.+|.+++++. |.. ...+..+|.+|... +++
T Consensus 76 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~-~~~~~~l~~~~~~~g~~~ 149 (368)
T 1fch_A 76 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-----PDN-QTALMALAVSFTNESLQR 149 (368)
T ss_dssp HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHTTCHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-----CCC-HHHHHHHHHHHHHcCCHH
Confidence 346888888888777 667888999999999999888773 221 33455666666554 666
Q ss_pred HHHHHHHHHHHHHHHcCChh-------------------------------------------H--HHHHHHHHHHHHHH
Q psy5288 97 EAIKAIERAVEIHTDMGRFI-------------------------------------------M--VAKHHENIAEIYEK 131 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~-------------------------------------------~--~a~~~~~lg~~y~~ 131 (186)
+|+.++++++.+........ . .+.++..+|.+|..
T Consensus 150 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~ 229 (368)
T 1fch_A 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 229 (368)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence 66666665554332211100 0 25677888999888
Q ss_pred hcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 132 ELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 132 ~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
. |++++|+.+|++++.+.+.. ..++.++|.+|...|++++|+++|++
T Consensus 230 ~-g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 276 (368)
T 1fch_A 230 S-GEYDKAVDCFTAALSVRPND------YLLWNKLGATLANGNQSEEAVAAYRR 276 (368)
T ss_dssp T-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 99999999999998885543 35778888888888888888888865
No 56
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.47 E-value=4.6e-13 Score=95.06 Aligned_cols=122 Identities=18% Similarity=0.195 Sum_probs=99.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy5288 45 RAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHE 123 (186)
Q Consensus 45 ~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~ 123 (186)
.+|.+++..|++++|+..+.+++.. .......+..+|.+|... ++++|+++|++++++.... +.++.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~ 69 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------PKAHR 69 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Confidence 3678888999999999999988875 334445566899999887 9999999999999986544 45899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHH-Hh
Q psy5288 124 NIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLY-EQ 185 (186)
Q Consensus 124 ~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~-~~ 185 (186)
.+|.+|... |++++|+.+|++++++.++. ..++.++|.+|...|++++|++.| ++
T Consensus 70 ~lg~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~aa~~~~~~ 125 (150)
T 4ga2_A 70 FLGLLYELE-ENTDKAVECYRRSVELNPTQ------KDLVLKIAELLCKNDVTDGRAKYWVER 125 (150)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHCSSSSHHHHHHHH
T ss_pred HHHHHHHHc-CchHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999999995 99999999999999997654 368999999999999999888764 64
No 57
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.47 E-value=5.7e-13 Score=98.46 Aligned_cols=132 Identities=24% Similarity=0.217 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF 115 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~ 115 (186)
.+++..| ..|..+...|++++|+.+|.+++ ++ ....+.++|.+|... ++++|+.+|++++.+....
T Consensus 4 ~~~~~~~-~~g~~~~~~~~~~~A~~~~~~a~-------~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--- 70 (213)
T 1hh8_A 4 VEAISLW-NEGVLAADKKDWKGALDAFSAVQ-------DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--- 70 (213)
T ss_dssp HHHHHHH-HHHHHHHHTTCHHHHHHHHHTSS-------SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHH-HHHHHHHHhCCHHHHHHHHHHHc-------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---
Confidence 3444444 56788889999999999999884 12 245788999999877 9999999999999885332
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC----------ChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE----------NKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~----------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++.++|.+|... |++++|+.+|++++.+.+... .......++.++|.+|...|++++|+++|++
T Consensus 71 ---~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 71 ---AVAYFQRGMLYYQT-EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp ---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 46889999999994 999999999999999887654 3334457899999999999999999999976
No 58
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.47 E-value=5.2e-13 Score=101.89 Aligned_cols=124 Identities=14% Similarity=0.055 Sum_probs=88.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy5288 49 LFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAA-NCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAE 127 (186)
Q Consensus 49 ~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~-~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~ 127 (186)
+|...|++++|+.+|.+++++ +|.. ...+..+| .+|...++++|+.+|++++++.... ...+..+|.
T Consensus 117 ~~~~~~~~~~A~~~~~~al~~-----~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~~~~ 184 (272)
T 3u4t_A 117 YFYNKGNFPLAIQYMEKQIRP-----TTTD-PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI------YIGYLWRAR 184 (272)
T ss_dssp HHHHTTCHHHHHHHHGGGCCS-----SCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHhhc-----CCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc------hHHHHHHHH
Confidence 344444444444444444443 1111 24455667 7777778888888888888775443 457788999
Q ss_pred HHHHhcCC---HHHHHHHHHHHHHHHhccCC--hHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 128 IYEKELED---QEKAIDHYQHAADCYAGEEN--KSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 128 ~y~~~lg~---~~~Ai~~y~kA~~l~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++... |+ +++|+..|++++++...... ......++..+|.+|...|++++|+++|++
T Consensus 185 ~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 185 ANAAQ-DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HHHHH-STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHc-CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99984 88 99999999999999865443 233447889999999999999999999986
No 59
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.45 E-value=3.1e-12 Score=101.53 Aligned_cols=141 Identities=9% Similarity=0.044 Sum_probs=108.4
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHc------------------------
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKN------------------------ 73 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~------------------------ 73 (186)
..|++++|+++|.++ |.++...|++++|+.+|.+++.+....
T Consensus 110 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 110 ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTH
T ss_pred HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence 446778887777766 456777788888888877766542211
Q ss_pred -----C---------------ChhH-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q psy5288 74 -----N---------------NKHD-AGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK 131 (186)
Q Consensus 74 -----~---------------~~~~-aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~ 131 (186)
| +|.. ....+..+|.+|... ++++|+.+|++++.+.... +.++..+|.++..
T Consensus 190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~ 263 (368)
T 1fch_A 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND------YLLWNKLGATLAN 263 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH
T ss_pred HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHH
Confidence 1 1110 245666788888876 9999999999999874332 4588999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 132 ELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 132 ~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
. |++++|+.+|++++.+.+.. ..++.++|.+|...|++++|+++|++
T Consensus 264 ~-g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 264 G-NQSEEAVAAYRRALELQPGY------IRSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp T-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5 99999999999999986543 36889999999999999999999976
No 60
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.45 E-value=2.4e-12 Score=100.26 Aligned_cols=141 Identities=15% Similarity=0.121 Sum_probs=113.5
Q ss_pred CCC-CHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CH
Q psy5288 32 GGN-KTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NP 95 (186)
Q Consensus 32 ~~~-~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~ 95 (186)
..+ ++++|+.+|.++ |.++...|++++|+.+|.+++++. +.. ...+..+|.+|... ++
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~-~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-----KGC-HLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-----TTC-SHHHHHHHHHHHHTTCH
T ss_pred HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-----ccc-HHHHHHHHHHHHHHhhH
Confidence 446 888888888877 667888999999999999998874 222 23355688888877 99
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHHHHh
Q psy5288 96 AEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENK---SSANKCLIKIANYSAL 172 (186)
Q Consensus 96 ~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~---~~~~~~~~~la~~y~~ 172 (186)
++|+.++++++++.... ..++..+|.++... |++++|+.+|++++.+.+..+.. .....++.++|.+|..
T Consensus 176 ~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 176 KLAERFFSQALSIAPED------PFVMHEVGVVAFQN-GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHHHHHHHHHHTTCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 99999999998765432 46789999999995 99999999999999998764332 1223688999999999
Q ss_pred ccCHHHHHHHHHh
Q psy5288 173 TDHLDKAIKLYEQ 185 (186)
Q Consensus 173 ~g~~~~A~~~~~~ 185 (186)
.|++++|+++|++
T Consensus 249 ~g~~~~A~~~~~~ 261 (330)
T 3hym_B 249 LKKYAEALDYHRQ 261 (330)
T ss_dssp TTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHH
Confidence 9999999999976
No 61
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=2.9e-12 Score=95.87 Aligned_cols=133 Identities=17% Similarity=0.300 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHH
Q psy5288 34 NKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEA 98 (186)
Q Consensus 34 ~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A 98 (186)
+++++|+.+|.++ |.++...|++++|+.+|.+++++. +.. ...+..+|.+|... ++++|
T Consensus 71 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 71 NELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-----MEN-GDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----CCS-HHHHHHHHHHHHHTSCHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHHhccHHHH
Confidence 5666666665555 445666667777777776666652 111 23455666666655 77777
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHH
Q psy5288 99 IKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDK 178 (186)
Q Consensus 99 ~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~ 178 (186)
+.++++++++.... ..++..+|.++... |++++|+.+|++++...+.. ..++..+|.+|...|++++
T Consensus 145 ~~~~~~~~~~~~~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~ 211 (243)
T 2q7f_A 145 LPYLQRAVELNEND------TEARFQFGMCLANE-GMLDEALSQFAAVTEQDPGH------ADAFYNAGVTYAYKENREK 211 (243)
T ss_dssp HHHHHHHHHHCTTC------HHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHHHHhCCcc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHccCHHH
Confidence 77777776654322 33667777777774 77778887777777765432 2567777888888888888
Q ss_pred HHHHHHh
Q psy5288 179 AIKLYEQ 185 (186)
Q Consensus 179 A~~~~~~ 185 (186)
|+++|++
T Consensus 212 A~~~~~~ 218 (243)
T 2q7f_A 212 ALEMLDK 218 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877765
No 62
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.45 E-value=1e-11 Score=101.14 Aligned_cols=158 Identities=14% Similarity=0.128 Sum_probs=94.0
Q ss_pred chHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHH
Q psy5288 3 DNEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGT 68 (186)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~ 68 (186)
.+|..+..+...|...+. .|++++|+.+|.++ |.++...|++++|+.+|.++++
T Consensus 21 ~~p~~~~~~~~~~~~~~~------------~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLA------------AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp --CHHHHHHHHHHHHHHH------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH------------CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345566666666665555 24777777777665 4456677777777777777766
Q ss_pred HHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH-----------------------------HHcCChhH-
Q psy5288 69 LHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIH-----------------------------TDMGRFIM- 117 (186)
Q Consensus 69 ~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~-----------------------------~~~~~~~~- 117 (186)
+. |.. ...+..+|.+|... ++++|+.+|++++++. ...|++..
T Consensus 89 ~~-----p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 89 LK-----MDF-TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HC-----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred cC-----CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 52 221 23344455555444 5555555555443321 11111111
Q ss_pred -------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 118 -------------VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 118 -------------~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
-..++..+|.+|... |++++|+.+|++++.+.+.. ..++..+|.+|...|++++|+++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 163 IAFLDKILEVCVWDAELRELRAECFIKE-GEPRKAISDLKAASKLKNDN------TEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHHCSC------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 123556677777774 77777777777777775543 3577788888888888888888876
Q ss_pred h
Q psy5288 185 Q 185 (186)
Q Consensus 185 ~ 185 (186)
+
T Consensus 236 ~ 236 (450)
T 2y4t_A 236 E 236 (450)
T ss_dssp H
T ss_pred H
Confidence 5
No 63
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1e-11 Score=101.02 Aligned_cols=151 Identities=7% Similarity=0.010 Sum_probs=133.4
Q ss_pred CCHHHHHHHHHHH--------------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC
Q psy5288 34 NKTDEAIDLYVRA--------------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS 93 (186)
Q Consensus 34 ~~~~~A~~~y~~a--------------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~ 93 (186)
|+|++|.++|.++ |.++...|++++|+.++.+++.+....++....+..+.++|.+|...
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 5778888777766 34455678999999999999999999988888889999999999877
Q ss_pred -CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHHHH
Q psy5288 94 -NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENK-SSANKCLIKIANYSA 171 (186)
Q Consensus 94 -~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~-~~~~~~~~~la~~y~ 171 (186)
++++|+.++++++......++....+.++..+|.+|.. +|++++|..+|++++.+......+ .....++..+|.++.
T Consensus 149 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (434)
T 4b4t_Q 149 KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK-LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC 227 (434)
T ss_dssp TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 599999999999999998876544 555678899999999
Q ss_pred hccCHHHHHHHHHh
Q psy5288 172 LTDHLDKAIKLYEQ 185 (186)
Q Consensus 172 ~~g~~~~A~~~~~~ 185 (186)
..|+|++|..+|.+
T Consensus 228 ~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 228 EDKDYKTAFSYFFE 241 (434)
T ss_dssp SSSCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHH
Confidence 99999999998854
No 64
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=7.4e-13 Score=99.11 Aligned_cols=135 Identities=17% Similarity=0.174 Sum_probs=106.9
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHH
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPA 96 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~ 96 (186)
..+++++|+.+|.++ |.++...|++++|+.+|.+++++. +. ....+..+|.+|... +++
T Consensus 35 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~-~~~~~~~la~~~~~~~~~~ 108 (243)
T 2q7f_A 35 EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-----SS-AATAYYGAGNVYVVKEMYK 108 (243)
T ss_dssp -------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT-CHHHHHHHHHHHHHTTCHH
T ss_pred HhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----Cc-chHHHHHHHHHHHHhccHH
Confidence 345666666666655 778999999999999999999873 32 246677889999876 999
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCH
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHL 176 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~ 176 (186)
+|+.++++++++.... ..++..+|.++... |++++|+.+|++++.+.+.. ..++..+|.+|...|++
T Consensus 109 ~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 109 EAKDMFEKALRAGMEN------GDLFYMLGTVLVKL-EQPKLALPYLQRAVELNEND------TEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHHHHHHHTCCS------HHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHcCCH
Confidence 9999999998875432 34788999999995 99999999999999986643 36889999999999999
Q ss_pred HHHHHHHHh
Q psy5288 177 DKAIKLYEQ 185 (186)
Q Consensus 177 ~~A~~~~~~ 185 (186)
++|+++|++
T Consensus 176 ~~A~~~~~~ 184 (243)
T 2q7f_A 176 DEALSQFAA 184 (243)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999975
No 65
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.44 E-value=1.7e-12 Score=103.97 Aligned_cols=134 Identities=16% Similarity=0.135 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC---------hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNN---------KHDAGLCFVDAANCYKKS-NPAEAIKAIERAVE 107 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~---------~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~ 107 (186)
.....+...|.++...|++++|+.+|.+++.+...... ....+.++.++|.+|... ++++|+.+|+++++
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567788899999999999999999999998543321 011267888999999987 99999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHH-HHHH
Q psy5288 108 IHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAI-KLYE 184 (186)
Q Consensus 108 i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~-~~~~ 184 (186)
+.... ..++.++|.+|.. +|++++|+.+|++|+.+.+.. ..++.+++.++..+|++++|. ..|.
T Consensus 225 ~~p~~------~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~ 289 (336)
T 1p5q_A 225 LDSNN------EKGLSRRGEAHLA-VNDFELARADFQKVLQLYPNN------KAAKTQLAVCQQRIRRQLAREKKLYA 289 (336)
T ss_dssp HCTTC------HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCc------HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86443 4589999999999 599999999999999997654 368899999999999999994 3443
No 66
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=1.3e-11 Score=94.88 Aligned_cols=128 Identities=18% Similarity=0.314 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHHH------------HHHHHh----cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhc----
Q psy5288 33 GNKTDEAIDLYVRA------------GNLFKL----GKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK---- 92 (186)
Q Consensus 33 ~~~~~~A~~~y~~a------------g~~~~~----~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~---- 92 (186)
.+++++|+.+|.++ |.+|.. .+++++|+.+|.++++. + ...++..+|.+|..
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSS
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCc
Confidence 45667776666665 445666 66777777777666653 2 23456677777765
Q ss_pred C-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy5288 93 S-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK----ELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIA 167 (186)
Q Consensus 93 ~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~----~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la 167 (186)
. ++++|+.+|++|+++ ++ ...+.++|.+|.. . +++++|+.+|++|++. +. ...+.++|
T Consensus 127 ~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~~~~-~~~~~A~~~~~~a~~~----~~----~~a~~~lg 189 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDL----ND----GDGCTILGSLYDAGRGTP-KDLKKALASYDKACDL----KD----SPGCFNAG 189 (273)
T ss_dssp CCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT----TC----HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHC----CC----HHHHHHHH
Confidence 3 777777777777653 22 3466777888776 5 7888888888887765 11 25667788
Q ss_pred HHHHh----ccCHHHHHHHHHh
Q psy5288 168 NYSAL----TDHLDKAIKLYEQ 185 (186)
Q Consensus 168 ~~y~~----~g~~~~A~~~~~~ 185 (186)
.+|.. .+++++|+++|++
T Consensus 190 ~~~~~g~~~~~~~~~A~~~~~~ 211 (273)
T 1ouv_A 190 NMYHHGEGATKNFKEALARYSK 211 (273)
T ss_dssp HHHHHTCSSCCCHHHHHHHHHH
T ss_pred HHHHcCCCCCccHHHHHHHHHH
Confidence 88888 8888888888765
No 67
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.43 E-value=4.2e-12 Score=94.58 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=51.8
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC---------
Q psy5288 86 AANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEEN--------- 155 (186)
Q Consensus 86 a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~--------- 155 (186)
+|.+|... ++++|+.+|++++++.+.. ..++..+|.+|... |++++|+.+|++++.+.+....
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNN------VDCLEACAEMQVCR-GQEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 55555544 5555555555555554322 23455555555553 5555555555555555443210
Q ss_pred --------------------hHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 156 --------------------KSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 156 --------------------~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+......+.++|.++..+|+|++|+.+|++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~ 182 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQK 182 (208)
T ss_dssp HHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 000112345567777778899999999986
No 68
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.43 E-value=5.8e-12 Score=96.37 Aligned_cols=140 Identities=21% Similarity=0.126 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHH
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMV 118 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~ 118 (186)
.+.+...|..+...|++++|+..|.++++.. .+......++..+|.+|... ++++|+..|++++++++.... .
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~ 88 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG---RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR---V 88 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---H
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch---h
Confidence 3456677888899999999999999998863 12223467788999999877 999999999999998765533 4
Q ss_pred HHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHHHHhccCChHHHH-----------HHHHHHHHHHHhccCHHHH
Q psy5288 119 AKHHENIAEIYEK--------ELEDQEKAIDHYQHAADCYAGEENKSSAN-----------KCLIKIANYSALTDHLDKA 179 (186)
Q Consensus 119 a~~~~~lg~~y~~--------~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~-----------~~~~~la~~y~~~g~~~~A 179 (186)
...+..+|.++.. . |++++|+..|++++..+++........ ..+..+|.+|...|+|++|
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQ-TDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCC-HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcccccccc-hhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 5679999999987 7 999999999999999988754322111 1127899999999999999
Q ss_pred HHHHHhC
Q psy5288 180 IKLYEQL 186 (186)
Q Consensus 180 ~~~~~~~ 186 (186)
+..|+++
T Consensus 168 ~~~~~~~ 174 (261)
T 3qky_A 168 AVTYEAV 174 (261)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999763
No 69
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.43 E-value=6.5e-12 Score=98.64 Aligned_cols=154 Identities=11% Similarity=0.011 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 7 KARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
+++.++..|...+. .|++++|+.+|.++ |.++...|++++|+.+|.+++++
T Consensus 2 ~~~~~~~~~~~~~~------------~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 66 (359)
T 3ieg_A 2 DVEKHLELGKKLLA------------AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--- 66 (359)
T ss_dssp HHHHHHHHHHHHHH------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred cHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 34556666666655 35888888888877 66788999999999999999988
Q ss_pred cCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH---HcCChhH------HHHHHHHHHHHHHHhcCCHHHHHHH
Q psy5288 73 NNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHT---DMGRFIM------VAKHHENIAEIYEKELEDQEKAIDH 142 (186)
Q Consensus 73 ~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~---~~~~~~~------~a~~~~~lg~~y~~~lg~~~~Ai~~ 142 (186)
+|... ..+..+|.+|... ++++|+.+|++++++.. ....... ....+..+|.++... |++++|+.+
T Consensus 67 --~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~ 142 (359)
T 3ieg_A 67 --KMDFT-AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG-ADYTAAITF 142 (359)
T ss_dssp --CTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred --CCCcc-hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHH
Confidence 34333 6677899999876 99999999999987644 2211000 011223447888884 999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 143 YQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 143 y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
|++++.+.+.. ..++..+|.+|...|++++|++.|++
T Consensus 143 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~ 179 (359)
T 3ieg_A 143 LDKILEVCVWD------AELRELRAECFIKEGEPRKAISDLKA 179 (359)
T ss_dssp HHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCc------hHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999886643 35778888888888888888888765
No 70
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=1.2e-11 Score=93.41 Aligned_cols=137 Identities=16% Similarity=0.172 Sum_probs=113.9
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHH
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPA 96 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~ 96 (186)
..+++++|.++|.++ |.++...|++++|.++|.+++. .+........+..+|.+|... +++
T Consensus 83 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~ 158 (252)
T 2ho1_A 83 TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPA 158 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHH
Confidence 458999999998887 5678899999999999999887 223344566777899999877 999
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCH
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHL 176 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~ 176 (186)
+|+.++++++++.... ..++..+|.++... |++++|+.++++++...+.. ..++..++.++...|++
T Consensus 159 ~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 159 QAKEYFEKSLRLNRNQ------PSVALEMADLLYKE-REYVPARQYYDLFAQGGGQN------ARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHHHHHHHHHHHCSCC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTSCCC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhcCccc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHccCH
Confidence 9999999998875322 45788999999995 99999999999999875532 35778999999999999
Q ss_pred HHHHHHHHh
Q psy5288 177 DKAIKLYEQ 185 (186)
Q Consensus 177 ~~A~~~~~~ 185 (186)
++|.+++++
T Consensus 226 ~~A~~~~~~ 234 (252)
T 2ho1_A 226 DTAASYGLQ 234 (252)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 71
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.42 E-value=1.2e-12 Score=93.60 Aligned_cols=103 Identities=11% Similarity=-0.008 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF 115 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~ 115 (186)
.+-.+.+...|.++...|++++|+.+|.+++.+ +|.. ..++..+|.+|... ++++|+.+|++|+.+.+...
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~-~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~-- 104 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYN-VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY-- 104 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc--
Confidence 344455666778888888888888888888887 4444 34566888888776 88888888888888776543
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
..+.++|.+|.. +|++++|+.+|++|+.+.++
T Consensus 105 ----~~~~~lg~~~~~-lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 105 ----TPVFHTGQCQLR-LKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp ----HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCC
T ss_pred ----HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC
Confidence 367888888888 48888888888888888654
No 72
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.41 E-value=3.4e-11 Score=94.48 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=109.2
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHH---------HHHHHH
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLC---------FVDAAN 88 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~---------~~~a~~ 88 (186)
..|++++|+..|.++ |.++...|++++|..+|.+++++... ....... ....|.
T Consensus 166 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD---HKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---chHHHHHHHHHHHHHHHHHHHH
Confidence 457888888877776 66788888899999988888876321 1111111 224466
Q ss_pred HHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy5288 89 CYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIA 167 (186)
Q Consensus 89 ~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la 167 (186)
++... ++++|+.++++++++... +.......+..+|.++... |++++|+.+|++++.+.+.. ..++..+|
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~~~ 313 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICHCFSKD-EKPVEAIRICSEVLQMEPDN------VNALKDRA 313 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCccc------HHHHHHHH
Confidence 67665 899999999999887643 4455556788999999995 99999999999999985543 36889999
Q ss_pred HHHHhccCHHHHHHHHHh
Q psy5288 168 NYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 168 ~~y~~~g~~~~A~~~~~~ 185 (186)
.+|...|++++|+++|++
T Consensus 314 ~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 999999999999999976
No 73
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.41 E-value=3.3e-12 Score=102.66 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++..+|.++... |++++|+.+|++++.+.+.. ..++.++|.++...|++++|++.|++
T Consensus 273 ~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 273 AYCNLANALKEK-GSVAEAEDCYNTALRLCPTH------ADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHHHHHHHHHH-SCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455556665553 66666666666666554322 24555666666666666666666654
No 74
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.41 E-value=8.4e-12 Score=88.10 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG 113 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~ 113 (186)
...+....+...|..+...|++++|+.+|.+++.+. +.. ...+..+|.+|... ++++|+.++++++.+....
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~- 80 (166)
T 1a17_A 8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELN-----PSN-AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY- 80 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-
Confidence 345667788888999999999999999999999973 332 56677899999877 9999999999999885432
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 114 RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 114 ~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++..+|.++... |++++|+.+|++++.+.+... .......++..+...|++++|++.+++
T Consensus 81 -----~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~p~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 81 -----IKGYYRRAASNMAL-GKFRAALRDYETVVKVKPHDK----DAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp -----HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 45789999999994 999999999999999876532 123345666668899999999999875
No 75
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.41 E-value=4.8e-12 Score=101.71 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++..+|.++... |++++|+.+|++++++.+.. ..++.++|.+|...|++++|++.|++
T Consensus 307 ~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 307 SLNNLANIKREQ-GNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHTTSCTTC------HHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 556677777763 77777777777777664432 24666777777777777777777764
No 76
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.41 E-value=1.3e-11 Score=104.08 Aligned_cols=140 Identities=16% Similarity=0.069 Sum_probs=106.1
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHH
Q psy5288 33 GNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAE 97 (186)
Q Consensus 33 ~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~ 97 (186)
.|++++|++.|.++ |.+|...|++++|.++|.++.++. +.. ...+..+|.+|... ++++
T Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 420 EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-----QYD-PLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CCC-HHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC-hHHHHHHHHHHHHhCCHHH
Confidence 35555555555544 344555666666666666665541 221 24466778888766 9999
Q ss_pred HHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCH
Q psy5288 98 AIKAIERAVEIHTDMGR-FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHL 176 (186)
Q Consensus 98 A~~~~~~Al~i~~~~~~-~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~ 176 (186)
|+++|++++++....+. +...+.++..+|.+|... |++++|+..|++++++.+.. ..++..+|.+|...|++
T Consensus 494 A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL-KMYDAAIDALNQGLLLSTND------ANVHTAIALVYLHKKIP 566 (597)
T ss_dssp HHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSSCC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhCCH
Confidence 99999999999988654 443478999999999995 99999999999999986543 37889999999999999
Q ss_pred HHHHHHHHh
Q psy5288 177 DKAIKLYEQ 185 (186)
Q Consensus 177 ~~A~~~~~~ 185 (186)
++|+++|++
T Consensus 567 ~~A~~~~~~ 575 (597)
T 2xpi_A 567 GLAITHLHE 575 (597)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999986
No 77
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.40 E-value=1.5e-11 Score=95.58 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=95.6
Q ss_pred HhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHH
Q psy5288 6 QKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHL 71 (186)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~ 71 (186)
..++.++..|...+. .+++++|+.+|.++ |.++...|++++|+.+|.+++++.
T Consensus 19 ~~~~~~~~~a~~~~~------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 85 (327)
T 3cv0_A 19 MYHENPMEEGLSMLK------------LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD- 85 (327)
T ss_dssp GGSSCHHHHHHHHHH------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHH------------hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 344555566655555 35788888877776 567888899999999998888762
Q ss_pred HcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-----------------------------CChhH----
Q psy5288 72 KNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM-----------------------------GRFIM---- 117 (186)
Q Consensus 72 ~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~-----------------------------~~~~~---- 117 (186)
|.. ...+..+|.+|... ++++|+.++++++++.... |++..
T Consensus 86 ----~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 86 ----PKD-IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp ----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHH
T ss_pred ----cCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 221 23344555555544 5555555555554431111 11111
Q ss_pred ----------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 118 ----------VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 118 ----------~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...++..+|.+|... |++++|+.++++++.+.+.. ..++..+|.+|...|++++|+++|++
T Consensus 161 ~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 161 LHAALEMNPNDAQLHASLGVLYNLS-NNYDSAAANLRRAVELRPDD------AQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 134566777777774 77777777777777765432 24666777777777777777777654
No 78
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.40 E-value=2.5e-11 Score=92.37 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 160 NKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 160 ~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++..+|.+|...|++++|+++|++
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36778899999999999999998875
No 79
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.39 E-value=3.4e-12 Score=88.05 Aligned_cols=97 Identities=22% Similarity=0.155 Sum_probs=82.9
Q ss_pred ChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 75 NKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 75 ~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
+|. .+..+.+.|..|... ++++|+.+|++|+++.+.. +.++.++|.+|.. +|++++|+..|++|+.+.+..
T Consensus 9 nP~-~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 9 NPE-LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp CHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred CHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhh
Confidence 343 355677899988876 9999999999999886443 5589999999999 599999999999999986653
Q ss_pred CChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 154 ENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 154 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++.++|.+|..+|++++|++.|++
T Consensus 81 ------~~a~~~lg~~~~~~~~~~~A~~~~~~ 106 (126)
T 4gco_A 81 ------IKGYIRKAACLVAMREWSKAQRAYED 106 (126)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 36899999999999999999999986
No 80
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.39 E-value=2.4e-12 Score=105.13 Aligned_cols=127 Identities=12% Similarity=0.017 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-C-HHHHHHHHHHHHHHHHHcCChhH
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-N-PAEAIKAIERAVEIHTDMGRFIM 117 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~-~~~A~~~~~~Al~i~~~~~~~~~ 117 (186)
.+.|...|.++...|++++|+.+|.+++.+ +|.. ..+|...|.++... + +++|+.+|++++.+....
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l-----~P~~-~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~----- 165 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL-----NAAN-YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----- 165 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CccC-HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-----
Confidence 455666677777777777777777777776 3433 33455666666655 4 777777777777665433
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++.++|.++.. +|++++|+.+|++|+.+.+++ ..+|.++|.++..+|++++|+++|++
T Consensus 166 -~~a~~~~g~~~~~-~g~~~eAl~~~~kal~ldP~~------~~a~~~lg~~~~~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 166 -YQVWHHRRVLVEW-LRDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQ 225 (382)
T ss_dssp -HHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred -HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3366666777666 377777777777777665543 25666666666666666666666654
No 81
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=6.3e-12 Score=103.29 Aligned_cols=140 Identities=11% Similarity=-0.009 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNN---KHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF 115 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~---~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~ 115 (186)
++.|+..|.++..+|++++|+++|.+|+++.+.... ....+..|.++|.+|... ++++|+.+|++++++.+.....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456888899999999999999999999999886432 224567888999999887 9999999999999999887543
Q ss_pred --hHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH---HhccCHHHHHHHHHh
Q psy5288 116 --IMVAKHHENIAEIYEKE-LEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYS---ALTDHLDKAIKLYEQ 185 (186)
Q Consensus 116 --~~~a~~~~~lg~~y~~~-lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y---~~~g~~~~A~~~~~~ 185 (186)
...+.++.++|..+... .++|++|+.+|++|+++.++. ..++..++.++ ...+++++|++.|++
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~------~~~~~~~~~~~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN------PEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 34567788888877652 147999999999999997653 23445555554 345666667766654
No 82
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.39 E-value=9.8e-12 Score=83.94 Aligned_cols=126 Identities=21% Similarity=0.330 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHH
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVA 119 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a 119 (186)
+.+...|..+...|++++|...|.++++.. +.. ...+..++.++... ++++|+.++++++.+.... .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~ 69 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------A 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------H
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-----Ccc-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc------h
Confidence 346677889999999999999999998862 222 44566788888765 9999999999998764322 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 120 KHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.++..+|.++... |++++|+.++++++...+.. ..++..+|.+|...|++++|+.+|++
T Consensus 70 ~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 70 EAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 5788899999995 99999999999999986543 36788999999999999999999875
No 83
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.38 E-value=1.2e-11 Score=102.76 Aligned_cols=141 Identities=16% Similarity=0.101 Sum_probs=115.2
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHH
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPA 96 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~ 96 (186)
..+++++|++.|.++ |.++...|++++|..+|.+++++. |.. ...+..+|.+|... +++
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~g~~~ 395 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-----PTL-PEVPTFFAEILTDRGDFD 395 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-THHHHHHHHHHHHTTCHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC-hHHHHHHHHHHHHhCCHH
Confidence 447888888887776 567778888888888888888772 222 34566788888876 999
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKEL----------EDQEKAIDHYQHAADCYAGEENKSSANKCLIKI 166 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~l----------g~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~l 166 (186)
+|+.+|++++++.............+..+|.++.. . |++++|+.+|++++.+.+.. ..++..+
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l 468 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR-QSSQDPTQLDEEKFNAAIKLLTKACELDPRS------EQAKIGL 468 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH-HHTC----CCHHHHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH-HhhccchhhhHhHHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence 99999999999998887665555566778888887 6 99999999999999986643 3688999
Q ss_pred HHHHHhccCHHHHHHHHHh
Q psy5288 167 ANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 167 a~~y~~~g~~~~A~~~~~~ 185 (186)
|.+|...|++++|+++|++
T Consensus 469 ~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHH
Confidence 9999999999999999986
No 84
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.38 E-value=2.2e-11 Score=87.53 Aligned_cols=113 Identities=11% Similarity=0.098 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC------ChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNN------NKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~------~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~ 112 (186)
++.+...|+.+...|+|++|+.+|.+++++..... ....-+.+|.+.|.++..+ ++++|+.+|.+|++++..-
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 45566778888899999999999999999965411 0112345899999999988 9999999999999995444
Q ss_pred CC-hhHHHHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 113 GR-FIMVAKHH----ENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 113 ~~-~~~~a~~~----~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
+. .+.-+..| .+.|.++.. +|++++|+..|++|+++.++.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~-lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHH-CCCHHHHHHHHHHHHhcCCCc
Confidence 32 22345567 999999999 699999999999999998874
No 85
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.37 E-value=9.1e-13 Score=95.45 Aligned_cols=153 Identities=10% Similarity=0.108 Sum_probs=111.0
Q ss_pred chHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHH
Q psy5288 3 DNEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGT 68 (186)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~ 68 (186)
||+...+.++..|...+. .|++++|+..|.++ |.++...|++++|+.+|.+++.
T Consensus 1 ~~~~~~~~~~~~a~~~~~------------~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 1 SNASPDEQLLKQVSELLQ------------QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp -----CTTHHHHHHHHHH------------TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred CCCCHHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 456666677777777776 35889999888776 6788899999999999998876
Q ss_pred HHHHcCChhHHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5288 69 LHLKNNNKHDAGLCFVDAANCYK-K-SNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146 (186)
Q Consensus 69 ~~~~~~~~~~aa~~~~~a~~~y~-~-~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA 146 (186)
.. | .. ..+...+.+.. . ....+|+.++++++++.... ...+..+|.++... |++++|+..|+++
T Consensus 69 ~~-----p-~~-~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~------~~~~~~la~~~~~~-g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 69 EY-----Q-DN-SYKSLIAKLELHQQAAESPELKRLEQELAANPDN------FELACELAVQYNQV-GRDEEALELLWNI 134 (176)
T ss_dssp GG-----C-CH-HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred cc-----C-Ch-HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-ccHHHHHHHHHHH
Confidence 52 2 11 11222232221 1 13345799999998875543 45889999999995 9999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 147 ADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 147 ~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+.+.+.... ...+.++|.++..+|++++|+..|++
T Consensus 135 l~~~p~~~~----~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 135 LKVNLGAQD----GEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HTTCTTTTT----THHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHhCcccCh----HHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 998664321 25788999999999999999999976
No 86
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.37 E-value=8.3e-12 Score=105.97 Aligned_cols=126 Identities=13% Similarity=0.021 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHH
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVA 119 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a 119 (186)
..+...|.++...|++++|+++|.+++++ ++.. ...+..+|.+|... ++++|+.+|++++++.... .
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~ 91 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLAL-----HPGH-PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH------P 91 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----STTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------H
Confidence 56777899999999999999999999997 3333 45677999999877 9999999999999885433 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhc---cCHHHHHHHHHh
Q psy5288 120 KHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALT---DHLDKAIKLYEQ 185 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~---g~~~~A~~~~~~ 185 (186)
..+.++|.+|... |++++|+.+|++++++.+.. ..++.++|.++..+ |++++|++.|++
T Consensus 92 ~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 92 GIALWLGHALEDA-GQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 5889999999995 99999999999999996643 36889999999999 999999999875
No 87
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.37 E-value=5.4e-12 Score=102.99 Aligned_cols=134 Identities=10% Similarity=0.022 Sum_probs=111.9
Q ss_pred CCCHHHHHHHHHHH--------------HHHHHhcCC-HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHH
Q psy5288 33 GNKTDEAIDLYVRA--------------GNLFKLGKK-WNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPA 96 (186)
Q Consensus 33 ~~~~~~A~~~y~~a--------------g~~~~~~g~-~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~ 96 (186)
.+++++|+.+|.++ |.++..+|+ +++|+.+|.+++.+ +|.. ..+|...|.++... +++
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-----~P~~-~~a~~~~g~~~~~~g~~~ 183 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-----QPKN-YQVWHHRRVLVEWLRDPS 183 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHHTCCT
T ss_pred CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----CCCC-HHHHHHHHHHHHHccCHH
Confidence 36889999998887 667889997 99999999999998 4544 45677899999876 999
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh-ccC
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSAL-TDH 175 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~-~g~ 175 (186)
+|+.+|++|+++.... ..++.++|.++.. +|++++|+.+|++++.+.+.. ..+|.++|.+|.. .|.
T Consensus 184 eAl~~~~kal~ldP~~------~~a~~~lg~~~~~-~g~~~eAl~~~~~al~l~P~~------~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 184 QELEFIADILNQDAKN------YHAWQHRQWVIQE-FKLWDNELQYVDQLLKEDVRN------NSVWNQRYFVISNTTGY 250 (382)
T ss_dssp THHHHHHHHHHHCTTC------HHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhCccC------HHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCc
Confidence 9999999999886554 4589999999999 599999999999999997754 3789999999999 555
Q ss_pred HHHH-----HHHHHh
Q psy5288 176 LDKA-----IKLYEQ 185 (186)
Q Consensus 176 ~~~A-----~~~~~~ 185 (186)
+++| +++|++
T Consensus 251 ~~eA~~~~el~~~~~ 265 (382)
T 2h6f_A 251 NDRAVLEREVQYTLE 265 (382)
T ss_dssp CSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 5777 466654
No 88
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.36 E-value=2.6e-11 Score=86.52 Aligned_cols=122 Identities=15% Similarity=0.047 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF 115 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~ 115 (186)
++.-........+....+.+.+ ++.+ +|.. ...+..+|.++... ++++|+.+|++++.+.+..
T Consensus 6 ~~~~~~~~~l~~~~~~~~~l~~-------al~l-----~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~--- 69 (151)
T 3gyz_A 6 TENESISTAVIDAINSGATLKD-------INAI-----PDDM-MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN--- 69 (151)
T ss_dssp ---CHHHHHHHHHHHTSCCTGG-------GCCS-----CHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHHCCCCHHH-------HhCC-----CHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Confidence 3444445555555544444443 3333 4444 44556888887766 9999999999999886544
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEEN-KSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~-~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+.++.++|.+|.. +|++++|+.+|++|+.+.++... ....+.++.. +|++++|++.|++
T Consensus 70 ---~~~~~~lg~~~~~-~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~-------lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 70 ---VDYIMGLAAIYQI-KEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR-------LKAPLKAKECFEL 129 (151)
T ss_dssp ---HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH-------TTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-------cCCHHHHHHHHHH
Confidence 4489999999999 49999999999999999887532 2333445554 6889999999876
No 89
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.36 E-value=2.9e-11 Score=82.39 Aligned_cols=121 Identities=17% Similarity=0.111 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhH
Q psy5288 39 AIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIM 117 (186)
Q Consensus 39 A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~ 117 (186)
.++.+...|..+...|++++|+.+|.+++++ +|.. ...+.++|.+|... ++++|+.+|++++++....
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----- 71 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----- 71 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----
Confidence 3566778889999999999999999999998 3443 46778999999887 9999999999999885433
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSAL 172 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~ 172 (186)
...+..+|.++.. +|++++|+.+|++++.+.++....+....++..++.+..+
T Consensus 72 -~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 72 -VRAYIRKATAQIA-VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp -HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH-HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 4589999999999 5999999999999999985432222223566666666543
No 90
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.36 E-value=7.9e-12 Score=91.96 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhH----------HHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHD----------AGLCFVDAANCYKKS-NPAEAIKAIERA 105 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~----------aa~~~~~a~~~y~~~-~~~~A~~~~~~A 105 (186)
.+.+..+...|..+...|++++|+.+|.+++.+.....+... ...++.++|.+|... ++++|+.+++++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 346677888899999999999999999999997544322111 147788999999887 999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHH
Q psy5288 106 VEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAI 180 (186)
Q Consensus 106 l~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~ 180 (186)
+++.... ..++..+|.+|.. +|++++|+.+|++++.+.+.. ..++..++.++..++++.++.
T Consensus 115 l~~~p~~------~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 115 LKIDKNN------VKALYKLGVANMY-FGFLEEAKENLYKAASLNPNN------LDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHSTTC------HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHHHC--
T ss_pred HHhCccc------HHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHHHHHHHH
Confidence 9984332 4588999999999 599999999999999997653 367888999999988888776
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=9.9e-12 Score=88.67 Aligned_cols=131 Identities=13% Similarity=0.081 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC
Q psy5288 36 TDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGR 114 (186)
Q Consensus 36 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~ 114 (186)
.+.....+...|..+...|++++|+.+|.++++.. +.. ...+..+|.+|... ++++|+.++++++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--- 74 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-----AFD-VDVALHLGIAYVKTGAVDRGTELLERSLADAPD--- 74 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-----SCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----ccC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Confidence 34567788899999999999999999999887652 222 46677889998876 999999999999987432
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 115 FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 115 ~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...++..+|.++... |++++|+.++++++.+.+.. ..++..+|.+|...|++++|+++|++
T Consensus 75 ---~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 75 ---NVKVATVLGLTYVQV-QKYDLAVPLLIKVAEANPIN------FNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp ---CHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCcHh------HHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 245788999999995 99999999999999986543 36789999999999999999999976
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.35 E-value=8.1e-12 Score=108.79 Aligned_cols=135 Identities=9% Similarity=-0.042 Sum_probs=112.9
Q ss_pred CCCCHHHHHHHHHHH----------------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q psy5288 32 GGNKTDEAIDLYVRA----------------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANC 89 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a----------------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~ 89 (186)
..+++++|++.|.++ |.++...|++++|+..|.+++++. +.. ..++..+|.+
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~a~~~lg~~ 476 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-----GWR-WRLVWYRAVA 476 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CCC-HHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----cch-HHHHHHHHHH
Confidence 346777777666665 457888999999999999999983 333 4567789999
Q ss_pred HhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q psy5288 90 YKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIAN 168 (186)
Q Consensus 90 y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~ 168 (186)
|... ++++|+.+|++|+++.... +..+.++|.+|... |++++ +.+|++|+.+.+.. ...+.++|.
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~P~~------~~a~~~lg~ 542 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPGE------LAPKLALAATAELA-GNTDE-HKFYQTVWSTNDGV------ISAAFGLAR 542 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHCTTC------HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHc-CChHH-HHHHHHHHHhCCch------HHHHHHHHH
Confidence 8876 9999999999999987655 34788999999995 99999 99999999997653 368899999
Q ss_pred HHHhccCHHHHHHHHHhC
Q psy5288 169 YSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 169 ~y~~~g~~~~A~~~~~~~ 186 (186)
+|..+|++++|++.|+++
T Consensus 543 ~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp HHHHTTCHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHhh
Confidence 999999999999999874
No 93
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.35 E-value=1.1e-11 Score=88.25 Aligned_cols=126 Identities=10% Similarity=0.034 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC---C---------hhHHHHHHHHHHHHHhcC-CHHHHHHHHH
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNN---N---------KHDAGLCFVDAANCYKKS-NPAEAIKAIE 103 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~---~---------~~~aa~~~~~a~~~y~~~-~~~~A~~~~~ 103 (186)
-+.++.+...|+.+...|++++|+.+|.+++.+..... + ......+|.++|.+|... ++++|+.+++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 45677888899999999999999999999999865432 1 223457788999999887 9999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcc
Q psy5288 104 RAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTD 174 (186)
Q Consensus 104 ~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g 174 (186)
+++++.... +.++..+|.+|.. +|++++|+.+|++++.+.+.+. ..+...++.+....+
T Consensus 88 ~al~~~p~~------~~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~p~~~-----~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 88 EVLKREETN------EKALFRRAKARIA-AWKLDEAEEDLKLLLRNHPAAA-----SVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHSTTC------HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHHHHH
T ss_pred HHHhcCCcc------hHHHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHHHH
Confidence 999984332 4589999999999 5999999999999999976532 134455555554443
No 94
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.35 E-value=8.5e-11 Score=86.49 Aligned_cols=165 Identities=11% Similarity=0.043 Sum_probs=125.6
Q ss_pred hHHhHHHHHHHHHHhhccCCCCcc---ccccCCCCHHHHHHHHHHH--------------HHHHHhc-CCHHHHHHHHHH
Q psy5288 4 NEQKARQLVAEAEKKISSSSKGFF---SQFTGGNKTDEAIDLYVRA--------------GNLFKLG-KKWNDGGNAFLQ 65 (186)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~A~~~y~~a--------------g~~~~~~-g~~~~A~~~y~~ 65 (186)
..++|..++.++-+........++ ..++..+++++|.++|.++ |.++... |++++|+.+|.+
T Consensus 23 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 102 (225)
T 2vq2_A 23 DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDK 102 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 346677777777665441101110 1122558999999999887 5578889 999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy5288 66 AGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQ 144 (186)
Q Consensus 66 a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~ 144 (186)
+++ .+........+..+|.+|... ++++|+.++++++++.... ..++..+|.++... |++++|+.+++
T Consensus 103 ~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~ 171 (225)
T 2vq2_A 103 ALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF------PPAFKELARTKMLA-GQLGDADYYFK 171 (225)
T ss_dssp HHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred HHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------chHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 987 223334456777899999877 9999999999998875432 45788999999995 99999999999
Q ss_pred HHHHHHh-ccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 145 HAADCYA-GEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 145 kA~~l~~-~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+++.+.+ .. ...+..++.++...|++++|..+++.
T Consensus 172 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 172 KYQSRVEVLQ------ADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCCCCC------HHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999876 33 24567888899999999999998865
No 95
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.34 E-value=5.1e-11 Score=97.03 Aligned_cols=142 Identities=15% Similarity=0.106 Sum_probs=107.9
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHH---------HHHHHH
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLC---------FVDAAN 88 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~---------~~~a~~ 88 (186)
..|++++|+.+|.++ |.+|...|++++|+.+|.+++.+... ....... +...|.
T Consensus 189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~ 265 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD---HKRCFAHYKQVKKLNKLIESAE 265 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888887776 55678888999999998888876211 1111111 123367
Q ss_pred HHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy5288 89 CYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIA 167 (186)
Q Consensus 89 ~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la 167 (186)
++... ++++|+.+|++++++... ++......+..+|.++.. +|++++|+.++++++.+.+.. ..++..+|
T Consensus 266 ~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~ 336 (450)
T 2y4t_A 266 ELIRDGRYTDATSKYESVMKTEPS--IAEYTVRSKERICHCFSK-DEKPVEAIRVCSEVLQMEPDN------VNALKDRA 336 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccc------HHHHHHHH
Confidence 77655 899999999999886433 445556789999999998 499999999999999986543 37889999
Q ss_pred HHHHhccCHHHHHHHHHh
Q psy5288 168 NYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 168 ~~y~~~g~~~~A~~~~~~ 185 (186)
.+|...|++++|+++|++
T Consensus 337 ~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHH
Confidence 999999999999999976
No 96
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.34 E-value=6.1e-11 Score=90.98 Aligned_cols=128 Identities=16% Similarity=0.306 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHH------------HHHHHh----cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhc----
Q psy5288 33 GNKTDEAIDLYVRA------------GNLFKL----GKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK---- 92 (186)
Q Consensus 33 ~~~~~~A~~~y~~a------------g~~~~~----~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~---- 92 (186)
.+++++|+++|.++ |.+|.. .+++++|+.+|.++++. ++ ...+.++|.+|..
T Consensus 91 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----ND----GDGCTILGSLYDAGRGT 162 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSS
T ss_pred ccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc----Cc----HHHHHHHHHHHHcCCCC
Confidence 46667776666665 445666 66777777777666653 11 2345566666664
Q ss_pred C-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy5288 93 S-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK----ELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIA 167 (186)
Q Consensus 93 ~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~----~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la 167 (186)
. ++++|+.+|+++++. ++ ...+..+|.+|.. . +++++|+.+|+++++.-+ ...+.++|
T Consensus 163 ~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~~--------~~a~~~l~ 225 (273)
T 1ouv_A 163 PKDLKKALASYDKACDL----KD----SPGCFNAGNMYHHGEGAT-KNFKEALARYSKACELEN--------GGGCFNLG 225 (273)
T ss_dssp CCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTCSSC-CCHHHHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHHHhCCC--------HHHHHHHH
Confidence 3 667777777766654 22 3456667777666 5 677777777777666411 24556667
Q ss_pred HHHHh----ccCHHHHHHHHHh
Q psy5288 168 NYSAL----TDHLDKAIKLYEQ 185 (186)
Q Consensus 168 ~~y~~----~g~~~~A~~~~~~ 185 (186)
.+|.. .+++++|+++|++
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHH
Confidence 77766 6777777766654
No 97
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.33 E-value=2.2e-11 Score=87.44 Aligned_cols=106 Identities=17% Similarity=0.092 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc------CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q psy5288 79 AGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM------GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 79 aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~------~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~ 151 (186)
.+..+.+.|..+... ++++|+.+|++|+++.... ...+.-+.++.++|.++.. +|+|++|+.+|++|+++|.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhh
Confidence 355666778777765 9999999999999999873 1112345599999999999 6999999999999999943
Q ss_pred ccC-ChHHHHHHH----HHHHHHHHhccCHHHHHHHHHh
Q psy5288 152 GEE-NKSSANKCL----IKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 152 ~~~-~~~~~~~~~----~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..+ ..+.-...| .+.|.++..+|++++|++.|++
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 211 111224677 9999999999999999999986
No 98
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.33 E-value=9.6e-12 Score=103.88 Aligned_cols=165 Identities=15% Similarity=0.096 Sum_probs=126.1
Q ss_pred HhHHHHHHHHHHhhccCCCCcc---ccccCCCCHHHHHHHHHHH-------------HHHHHhc---------CCHHHHH
Q psy5288 6 QKARQLVAEAEKKISSSSKGFF---SQFTGGNKTDEAIDLYVRA-------------GNLFKLG---------KKWNDGG 60 (186)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~A~~~y~~a-------------g~~~~~~---------g~~~~A~ 60 (186)
++|.+++.+|-+.-..-...|+ ..++..|++++|+.+|.++ |.++... |++++|+
T Consensus 120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~ 199 (474)
T 4abn_A 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSV 199 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHH
Confidence 5677777777554431000110 1122457999999998877 6678888 9999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q psy5288 61 NAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK---------SNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK 131 (186)
Q Consensus 61 ~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~---------~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~ 131 (186)
.+|.+++++ +|.. ...+..+|.+|.. .++++|+.+|++|+++... ...-+..+.++|.+|..
T Consensus 200 ~~~~~al~~-----~p~~-~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~ 270 (474)
T 4abn_A 200 RQAKLAVQM-----DVLD-GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKY 270 (474)
T ss_dssp HHHHHHHHH-----CTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-----CCCC-HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHH
Confidence 999999998 3443 3567788888864 4689999999999998541 11346689999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 132 ELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 132 ~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
. |++++|+.+|++|+.+.+.. ..++.+++.++..+|++++|++.+.++
T Consensus 271 ~-g~~~~A~~~~~~al~l~p~~------~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 271 E-ESYGEALEGFSQAAALDPAW------PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp T-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred c-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5 99999999999999997654 368899999999999999999987653
No 99
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.32 E-value=1.8e-11 Score=100.99 Aligned_cols=139 Identities=17% Similarity=0.166 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHH
Q psy5288 34 NKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEA 98 (186)
Q Consensus 34 ~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A 98 (186)
+++++|+..|.++ |.++...|++++|+.+|.++++.. +.. ...+..+|.+|... ++++|
T Consensus 318 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-----PEA-PEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-----TTC-SHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-----ccC-HHHHHHHHHHHHHCCCHHHH
Confidence 4556666555554 445556666666666666666552 111 24556778888776 89999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccC
Q psy5288 99 IKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK---ELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDH 175 (186)
Q Consensus 99 ~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~---~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~ 175 (186)
+.+|++++++..........+..+..+|.++.. . |++++|+.+|++++.+.+.. ..++..+|.+|...|+
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV-ENFIEATNLLEKASKLDPRS------EQAKIGLAQMKLQQED 464 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhcC
Confidence 999999999988776654445588999999998 7 99999999999999986543 3688999999999999
Q ss_pred HHHHHHHHHh
Q psy5288 176 LDKAIKLYEQ 185 (186)
Q Consensus 176 ~~~A~~~~~~ 185 (186)
+++|+++|++
T Consensus 465 ~~~A~~~~~~ 474 (514)
T 2gw1_A 465 IDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999976
No 100
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.31 E-value=2.4e-11 Score=101.02 Aligned_cols=119 Identities=12% Similarity=0.044 Sum_probs=54.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENI 125 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~l 125 (186)
|.++...|++++|+.+|.+++++. +.. ...+..+|.+|... ++++|+.+|++++++..... .++..+
T Consensus 283 ~~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l 350 (537)
T 3fp2_A 283 ALTLADKENSQEFFKFFQKAVDLN-----PEY-PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV------YPYIQL 350 (537)
T ss_dssp HHHTCCSSCCHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS------HHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHhccC-----CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHH
Confidence 555555555555555555555441 111 22344445554443 55555555555544432221 234444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 126 AEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 126 g~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
|.++... |++++|+.+|++++.+.+... .++..+|.+|...|++++|++.|+
T Consensus 351 a~~~~~~-g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 351 ACLLYKQ-GKFTESEAFFNETKLKFPTLP------EVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHCTTCT------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4444442 455555555555444433221 344444444444444444444443
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.30 E-value=1.7e-10 Score=86.12 Aligned_cols=132 Identities=13% Similarity=0.031 Sum_probs=104.9
Q ss_pred CCCHHHHHHHHHHH------------HHHHHhcC----CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhc----
Q psy5288 33 GNKTDEAIDLYVRA------------GNLFKLGK----KWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK---- 92 (186)
Q Consensus 33 ~~~~~~A~~~y~~a------------g~~~~~~g----~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~---- 92 (186)
.+++++|+.+|.++ |.+|.. + ++++|+++|.++++. |+ ..++.++|.+|..
T Consensus 31 ~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~----~~a~~~Lg~~y~~g~g~ 101 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GS----KSGEIVLARVLVNRQAG 101 (212)
T ss_dssp HTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHTCGGGS
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCC
Confidence 47899999999888 445665 6 899999999999652 33 3567799999986
Q ss_pred C-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy5288 93 S-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK----ELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIA 167 (186)
Q Consensus 93 ~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~----~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la 167 (186)
. ++++|+.+|++|++. ++....+..+.+||.+|.. . +++++|+.+|++|+++ +. ++ ..+.+||
T Consensus 102 ~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~-~~--~~----~a~~~Lg 169 (212)
T 3rjv_A 102 ATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGP-EDDVKASEYFKGSSSL-SR--TG----YAEYWAG 169 (212)
T ss_dssp SCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSS-CCHHHHHHHHHHHHHT-SC--TT----HHHHHHH
T ss_pred ccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHc-CC--CH----HHHHHHH
Confidence 3 899999999999753 4433557789999999998 6 7999999999999987 22 21 4678999
Q ss_pred HHHHhc-c-----CHHHHHHHHHh
Q psy5288 168 NYSALT-D-----HLDKAIKLYEQ 185 (186)
Q Consensus 168 ~~y~~~-g-----~~~~A~~~~~~ 185 (186)
.+|... | ++++|+.+|++
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~ 193 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNV 193 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHH
Confidence 999864 3 99999999975
No 102
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.30 E-value=8.1e-11 Score=86.75 Aligned_cols=128 Identities=20% Similarity=0.205 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHH-----------HHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q psy5288 7 KARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVR-----------AGNLFKLGKKWNDGGNAFLQAGTLHLKNNN 75 (186)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~-----------ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~ 75 (186)
++..+...|...+. .++|++|++.|.+ .|.+|...|++++|+.+|.+++.+.
T Consensus 5 ~~~~~~~~g~~~~~------------~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----- 67 (213)
T 1hh8_A 5 EAISLWNEGVLAAD------------KKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD----- 67 (213)
T ss_dssp HHHHHHHHHHHHHH------------TTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHH------------hCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 44445555555444 3577777776655 4888999999999999999999983
Q ss_pred hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC----------ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy5288 76 KHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG----------RFIMVAKHHENIAEIYEKELEDQEKAIDHYQ 144 (186)
Q Consensus 76 ~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~----------~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~ 144 (186)
+.. ...+.++|.+|... ++++|+.+|++++++..... .....+.++.++|.+|... |++++|+.+|+
T Consensus 68 ~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 145 (213)
T 1hh8_A 68 KHL-AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK-EEWKKAEEQLA 145 (213)
T ss_dssp TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred ccc-hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc-cCHHHHHHHHH
Confidence 333 46677999999887 99999999999999876655 4455678999999999995 99999999999
Q ss_pred HHHHHHhcc
Q psy5288 145 HAADCYAGE 153 (186)
Q Consensus 145 kA~~l~~~~ 153 (186)
+++.+.+..
T Consensus 146 ~al~~~p~~ 154 (213)
T 1hh8_A 146 LATSMKSEP 154 (213)
T ss_dssp HHHTTCCSG
T ss_pred HHHHcCccc
Confidence 999997754
No 103
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.30 E-value=3.3e-11 Score=100.29 Aligned_cols=132 Identities=12% Similarity=0.141 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC---------hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNN---------KHDAGLCFVDAANCYKKS-NPAEAIKAIERAVE 107 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~---------~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~ 107 (186)
..+..+...|+.+...|++++|+.+|.+++++...... ......+|.++|.||... ++++|+.+|++|++
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44567788899999999999999999999998654321 112267888999999988 99999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHH
Q psy5288 108 IHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKL 182 (186)
Q Consensus 108 i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~ 182 (186)
+.... ...+.++|.+|.. +|++++|+.+|++|+.+.+... .++.+++.++..+|++++|...
T Consensus 346 ~~p~~------~~a~~~~g~a~~~-~g~~~~A~~~~~~al~l~P~~~------~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 346 LDSAN------EKGLYRRGEAQLL-MNEFESAKGDFEKVLEVNPQNK------AARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HSTTC------HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcc------HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 86543 5689999999999 5999999999999999976542 5788999999999999988753
No 104
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.30 E-value=3e-11 Score=101.92 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=86.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy5288 49 LFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAE 127 (186)
Q Consensus 49 ~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~ 127 (186)
+|...|++++|+++|.++.++. +. ....+..++.+|... ++++|+++|++++++... + ..++..+|.
T Consensus 416 ~~~~~g~~~~A~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~ 483 (597)
T 2xpi_A 416 SFAIEGEHDQAISAYTTAARLF-----QG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQY--D----PLLLNELGV 483 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTT-----TT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--C----HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-----cc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----hHHHHHHHH
Confidence 3444455555555555444431 11 123344556666554 778888888877765322 1 346889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 128 IYEKELEDQEKAIDHYQHAADCYAGEE-NKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 128 ~y~~~lg~~~~Ai~~y~kA~~l~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+|... |++++|+.+|++++++.++.+ .+.....++..+|.+|...|++++|+++|++
T Consensus 484 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 484 VAFNK-SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHh-CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99995 999999999999999987643 3332247899999999999999999999976
No 105
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.30 E-value=1.7e-10 Score=77.58 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=102.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG 113 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~ 113 (186)
.-..-...+...|..+...|++++|+.+|.+++.+. +.. ...+..+|.+|... ++++|+.++++++.+....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~- 79 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-----PAN-AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY- 79 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----CCC-HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-
Confidence 445667788888999999999999999999999872 332 45677899999876 9999999999999874332
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCH
Q psy5288 114 RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHL 176 (186)
Q Consensus 114 ~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~ 176 (186)
..++..+|.++... |++++|+.+|++++.+.+.. ..++..++.++..+|++
T Consensus 80 -----~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 80 -----SKAYGRMGLALSSL-NKHVEAVAYYKKALELDPDN------ETYKSNLKIAELKLREA 130 (131)
T ss_dssp -----HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHHhcC
Confidence 45789999999994 99999999999999986643 36788999999998875
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.29 E-value=1.9e-10 Score=86.39 Aligned_cols=140 Identities=11% Similarity=0.050 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHH
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVA 119 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a 119 (186)
+.+...|..+...|++++|+..|.++++... +......++..+|.+|... ++++|+..|++++++++.... +.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---~~ 78 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---ID 78 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---HH
Confidence 3455667888899999999999999998732 1223456778899999877 999999999999988776543 34
Q ss_pred HHHHHHHHHHHHh-----------------cCCHHHHHHHHHHHHHHHhccCChHHH-----------HHHHHHHHHHHH
Q psy5288 120 KHHENIAEIYEKE-----------------LEDQEKAIDHYQHAADCYAGEENKSSA-----------NKCLIKIANYSA 171 (186)
Q Consensus 120 ~~~~~lg~~y~~~-----------------lg~~~~Ai~~y~kA~~l~~~~~~~~~~-----------~~~~~~la~~y~ 171 (186)
..+..+|.++... .|++++|+..|++++..+++....... ......+|.+|.
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~ 158 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT 158 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777776541 378999999999999999876432211 112257899999
Q ss_pred hccCHHHHHHHHHhC
Q psy5288 172 LTDHLDKAIKLYEQL 186 (186)
Q Consensus 172 ~~g~~~~A~~~~~~~ 186 (186)
..|++++|+..|+++
T Consensus 159 ~~~~~~~A~~~~~~~ 173 (225)
T 2yhc_A 159 ERGAWVAVVNRVEGM 173 (225)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHH
Confidence 999999999999863
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.28 E-value=1e-11 Score=87.92 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF 115 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~ 115 (186)
.+-...+...|.++...|++++|+.+|.+++.+ +|.. ...+..+|.+|... ++++|+.+|++++.+....
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--- 88 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYD-SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE--- 88 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----Cccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---
Confidence 445566777889999999999999999999987 4444 45566899999877 9999999999999886544
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
...+.++|.+|.. +|++++|+.+|++++.+.+..
T Consensus 89 ---~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 89 ---PRFPFHAAECLLQ-XGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp ---THHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTC
T ss_pred ---chHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCC
Confidence 2478899999999 599999999999999998754
No 108
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.28 E-value=3.9e-11 Score=97.43 Aligned_cols=131 Identities=14% Similarity=0.134 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC----------ChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNN----------NKHDAGLCFVDAANCYKKS-NPAEAIKAIERAV 106 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~----------~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al 106 (186)
+.+..+...|..+...|++++|+.+|.+++++..... .......+|.++|.+|... ++++|+.+|++|+
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3455677889999999999999999999999765431 2334567888999999887 9999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHH
Q psy5288 107 EIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIK 181 (186)
Q Consensus 107 ~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~ 181 (186)
++... -+.++..+|.+|.. +|++++|+.+|++|+.+.+.. ..++..++.++..+++++++.+
T Consensus 301 ~~~p~------~~~a~~~lg~~~~~-~g~~~eA~~~l~~Al~l~P~~------~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 301 EIDPS------NTKALYRRAQGWQG-LKEYDQALADLKKAQEIAPED------KAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCTT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCch------hHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 86532 25689999999999 599999999999999997653 3677889999999999988865
No 109
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.28 E-value=2.5e-10 Score=76.89 Aligned_cols=123 Identities=17% Similarity=0.147 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-CCh
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM-GRF 115 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~-~~~ 115 (186)
+....+...|.++...|++++|+.+|.+++... +.. ...+..+|.+|... ++++|+.++++++.+.... ++.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELD-----PTN-MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----Ccc-HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence 346678888999999999999999999999873 332 45677899999876 9999999999999999875 555
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcc
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTD 174 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g 174 (186)
.....++..+|.+|.. +|++++|+.+|++++.+.++ ......++.+...++
T Consensus 76 ~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 76 RQIAKAYARIGNSYFK-EEKYKDAIHFYNKSLAEHRT-------PDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHH
Confidence 6668899999999999 49999999999999997542 245556666655443
No 110
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.28 E-value=2.1e-10 Score=81.72 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG 113 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~ 113 (186)
+-..-++.+...|.++...|++++|+++|.+++++. +.. ...+.++|.+|... ++++|+.+|++++++....
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~- 78 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----PAN-PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY- 78 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CcC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-
Confidence 345667788889999999999999999999999983 433 56778999999887 9999999999999986443
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q psy5288 114 RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEEN 155 (186)
Q Consensus 114 ~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~ 155 (186)
..++..+|.+|.. +|++++|+.+|++++.+.++...
T Consensus 79 -----~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 79 -----SKAWSRLGLARFD-MADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp -----HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHSSSCC
T ss_pred -----HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCchH
Confidence 5689999999999 59999999999999999887653
No 111
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=1.2e-10 Score=95.72 Aligned_cols=146 Identities=15% Similarity=0.063 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHH-----------------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChh--HHHHHHHHHH
Q psy5288 33 GNKTDEAIDLYVRA-----------------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKH--DAGLCFVDAA 87 (186)
Q Consensus 33 ~~~~~~A~~~y~~a-----------------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~--~aa~~~~~a~ 87 (186)
.|++++|+++|.++ |.+|..+|++++|..+|.+++++.+....+. ..+..+.+.|
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g 143 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence 46777777777665 5578889999999999999999998865443 3356677777
Q ss_pred HHHhcC---CHHHHHHHHHHHHHHHHHc-----------------CChhHH--------------HHHHHHHHHHH----
Q psy5288 88 NCYKKS---NPAEAIKAIERAVEIHTDM-----------------GRFIMV--------------AKHHENIAEIY---- 129 (186)
Q Consensus 88 ~~y~~~---~~~~A~~~~~~Al~i~~~~-----------------~~~~~~--------------a~~~~~lg~~y---- 129 (186)
.++... ++++|+.+|++|+++.+.. ++...+ ..++..+|..+
T Consensus 144 ~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~ 223 (472)
T 4g1t_A 144 WTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMR 223 (472)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence 666543 6899999999998864321 111111 11223333332
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 130 EKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 130 ~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.. .+++++|+.+|++++.+.+.. ..++.++|.+|...|++++|++.|++
T Consensus 224 ~~-~~~~~~a~~~~~~al~~~~~~------~~~~~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 224 EE-GEEEGEGEKLVEEALEKAPGV------TDVLRSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp -------CHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hh-hhHHHHHHHHHHHHHHhCccH------HHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 22 256677777777777765432 35788999999999999999999876
No 112
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.28 E-value=8.3e-11 Score=79.73 Aligned_cols=122 Identities=19% Similarity=0.169 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG 113 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~ 113 (186)
........+...|.++...|++++|+.+|.+++++ ++.. ...+..+|.+|... ++++|+.++++++++...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-- 82 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKD-AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-- 82 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTC-HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--
Confidence 44556777788899999999999999999999986 2332 56678999999877 999999999999987543
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccC
Q psy5288 114 RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDH 175 (186)
Q Consensus 114 ~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~ 175 (186)
-..++..+|.++... |++++|+.+|++++.+.+.. ..++..++.++...|+
T Consensus 83 ----~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 ----FIKGYTRKAAALEAM-KDYTKAMDVYQKALDLDSSC------KEAADGYQRCMMAQYN 133 (133)
T ss_dssp ----CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCGGG------THHHHHHHHHHHHHTC
T ss_pred ----chHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcC
Confidence 245889999999994 99999999999999987654 2577889999988764
No 113
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.27 E-value=7.2e-11 Score=84.01 Aligned_cols=102 Identities=16% Similarity=0.031 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC------------hhHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5288 77 HDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGR------------FIMVAKHHENIAEIYEKELEDQEKAIDHY 143 (186)
Q Consensus 77 ~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~------------~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y 143 (186)
...+..+.+.|..+... ++++|+.+|.+|+.+...... .+..+.++.++|.+|.. +|++++|+.++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~ 86 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETS 86 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 34577788888888776 999999999999999654321 34456799999999999 59999999999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 144 QHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 144 ~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++|+.+.+.. ..++.++|.+|..+|++++|+..|++
T Consensus 87 ~~al~~~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 87 SEVLKREETN------EKALFRRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp HHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCcc------hHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 9999996543 37899999999999999999999976
No 114
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.27 E-value=2.7e-11 Score=92.17 Aligned_cols=134 Identities=13% Similarity=-0.005 Sum_probs=106.0
Q ss_pred CCCCHHHHHHHHHHH------------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC
Q psy5288 32 GGNKTDEAIDLYVRA------------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS 93 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a------------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~ 93 (186)
..+++++|+..|.++ |.++...|++++|+.+|.+++++ +|.. ...+..+|.+|...
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~-~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-----RPDM-PEVFNYLGIYLTQA 90 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCC-HHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-----CCCc-HHHHHHHHHHHHHc
Confidence 457888888888766 56788999999999999999997 3332 45677899999877
Q ss_pred -CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh
Q psy5288 94 -NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSAL 172 (186)
Q Consensus 94 -~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~ 172 (186)
++++|+.+|++++++.... ..++..+|.+|... |++++|+.+|++++.+.+... .... ...++..
T Consensus 91 ~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~------~~~~-~~~~~~~ 156 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYG-GRDKLAQDDLLAFYQDDPNDP------FRSL-WLYLAEQ 156 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTC------THHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCH------HHHH-HHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccc------cHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCCh------HHHH-HHHHHHH
Confidence 9999999999999885443 35889999999994 999999999999999866532 1222 2234466
Q ss_pred ccCHHHHHHHHHh
Q psy5288 173 TDHLDKAIKLYEQ 185 (186)
Q Consensus 173 ~g~~~~A~~~~~~ 185 (186)
.|++++|+.+|++
T Consensus 157 ~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 157 KLDEKQAKEVLKQ 169 (275)
T ss_dssp HHCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHH
Confidence 7999999999864
No 115
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.27 E-value=3.5e-10 Score=93.24 Aligned_cols=162 Identities=15% Similarity=0.030 Sum_probs=123.8
Q ss_pred HHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH-------------HHHHHhcCCHHHHHHHHHHHHHHHH
Q psy5288 5 EQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA-------------GNLFKLGKKWNDGGNAFLQAGTLHL 71 (186)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a-------------g~~~~~~g~~~~A~~~y~~a~~~~~ 71 (186)
...++.+...|...+. .|+|++|+.+|.++ |.++...|++++|+.+|.+++++
T Consensus 3 ~~~a~~~~~~g~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 68 (514)
T 2gw1_A 3 DKYALALKDKGNQFFR------------NKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL-- 68 (514)
T ss_dssp HHHHHHHHHHHHHHHH------------TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred chhHHHHHHHHHHHHH------------hccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--
Confidence 4667788888888877 35899999998887 56788999999999999999987
Q ss_pred HcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh-----------------------------------
Q psy5288 72 KNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF----------------------------------- 115 (186)
Q Consensus 72 ~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~----------------------------------- 115 (186)
+|.. ..++..+|.+|... ++++|+.+|++++.+.......
T Consensus 69 ---~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 144 (514)
T 2gw1_A 69 ---KPDY-SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS 144 (514)
T ss_dssp ---CSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred ---ChHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3443 35677899999877 9999999999987654211000
Q ss_pred --------------------------------------hHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHh---
Q psy5288 116 --------------------------------------IMVAKHHENIAEIYEK---ELEDQEKAIDHYQHAADCYA--- 151 (186)
Q Consensus 116 --------------------------------------~~~a~~~~~lg~~y~~---~lg~~~~Ai~~y~kA~~l~~--- 151 (186)
+.-+..+..+|.++.. . |++++|+.+|++++..++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 223 (514)
T 2gw1_A 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSP-ESYDKADESFTKAARLFEEQL 223 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCT-THHHHHHHHHHHHHHHHHHHT
T ss_pred CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHhhhhh
Confidence 0115566777777664 4 999999999999999532
Q ss_pred --ccCC---hHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 152 --GEEN---KSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 152 --~~~~---~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..+. ......++..+|.++...|++++|+.+|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 262 (514)
T 2gw1_A 224 DKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK 262 (514)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred ccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1111 134457889999999999999999999976
No 116
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.26 E-value=1.1e-10 Score=83.30 Aligned_cols=98 Identities=16% Similarity=0.071 Sum_probs=84.8
Q ss_pred ChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 75 NKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 75 ~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
.....+..+...|.++... ++++|+.+|++++++.... +.++.++|.+|.. +|++++|+.+|++++.+.+..
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence 3445667788899998876 9999999999999886543 5689999999999 599999999999999997653
Q ss_pred CChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 154 ENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 154 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++.++|.+|..+|++++|+++|++
T Consensus 79 ------~~~~~~lg~~~~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 79 ------SKAWSRLGLARFDMADYKGAKEAYEK 104 (164)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 47889999999999999999999976
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.2e-10 Score=79.21 Aligned_cols=93 Identities=16% Similarity=0.084 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHH
Q psy5288 80 GLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSS 158 (186)
Q Consensus 80 a~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~ 158 (186)
+..+.+.|.++... ++++|+.+|++++++.... +.++.++|.+|.. +|++++|+.+|++++.+.+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~----- 71 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNF----- 71 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCc-----
Confidence 55677888888766 9999999999999886443 4689999999999 599999999999999996653
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 159 ANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 159 ~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++.++|.+|..+|++++|++.|++
T Consensus 72 -~~~~~~lg~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 72 -VRAYIRKATAQIAVKEYASALETLDA 97 (126)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 36889999999999999999999976
No 118
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.22 E-value=7.5e-10 Score=91.73 Aligned_cols=115 Identities=10% Similarity=-0.063 Sum_probs=96.1
Q ss_pred HhcCCHHHHHHHHHHHHHHHHH-cCC-hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc--CChhHHHHHHHHH
Q psy5288 51 KLGKKWNDGGNAFLQAGTLHLK-NNN-KHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM--GRFIMVAKHHENI 125 (186)
Q Consensus 51 ~~~g~~~~A~~~y~~a~~~~~~-~~~-~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~--~~~~~~a~~~~~l 125 (186)
...|+|++|...|++++.+..+ +|. ....+..+.++|.+|... ++++|+.+++++++++... .+++..+..+.+|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4568999999999999999886 453 346788999999999987 9999999999999999765 4789999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhcc--CChHHHHHHHHHH
Q psy5288 126 AEIYEKELEDQEKAIDHYQHAADCYAGE--ENKSSANKCLIKI 166 (186)
Q Consensus 126 g~~y~~~lg~~~~Ai~~y~kA~~l~~~~--~~~~~~~~~~~~l 166 (186)
|.+|..+ |++++|+.+|++|+++.... .+++.......+|
T Consensus 389 a~~~~~q-g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 389 GRLYMGL-ENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHhc-cCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 9999996 99999999999999998863 2333333454444
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.21 E-value=8.1e-11 Score=91.95 Aligned_cols=135 Identities=10% Similarity=0.040 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHH
Q psy5288 34 NKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEA 98 (186)
Q Consensus 34 ~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A 98 (186)
|++++|+..|.++ |.++...|++++|+..+.++... +|... .....++..+... +.++|
T Consensus 131 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~p~~~-~~~~~~~~~l~~~~~~~~a 204 (287)
T 3qou_A 131 SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----DQDTR-YQGLVAQIELLXQAADTPE 204 (287)
T ss_dssp TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----GCSHH-HHHHHHHHHHHHHHTSCHH
T ss_pred CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----hcchH-HHHHHHHHHHHhhcccCcc
Confidence 3555555555554 34455555555555555555443 12111 1222223222222 44556
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHH
Q psy5288 99 IKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDK 178 (186)
Q Consensus 99 ~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~ 178 (186)
+..+++++.+.... ...+.++|.+|... |++++|+..|++++...+.... ...+.+++.++..+|+.++
T Consensus 205 ~~~l~~al~~~P~~------~~~~~~la~~l~~~-g~~~~A~~~l~~~l~~~p~~~~----~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 205 IQQLQQQVAENPED------AALATQLALQLHQV-GRNEEALELLFGHLRXDLTAAD----GQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTGGG----GHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCCcc------HHHHHHHHHHHHHc-ccHHHHHHHHHHHHhccccccc----chHHHHHHHHHHHcCCCCc
Confidence 66666665554332 34788999999995 9999999999999998765421 3678999999999999999
Q ss_pred HHHHHHh
Q psy5288 179 AIKLYEQ 185 (186)
Q Consensus 179 A~~~~~~ 185 (186)
|+..|.+
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 120
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.21 E-value=4.7e-10 Score=92.88 Aligned_cols=136 Identities=11% Similarity=-0.016 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCC-hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy5288 36 TDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK-NNN-KHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 36 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~-~~~-~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~ 112 (186)
|..+.+....+ .-+..+|++++|...|++++++..+ +|. ....+..+.+++.+|... ++++|+.++++++.++...
T Consensus 284 ~~~~~~ll~~i-e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~ 362 (429)
T 3qwp_A 284 WKEVQESLKKI-EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF 362 (429)
T ss_dssp HHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Confidence 44444444443 4466789999999999999998765 443 335788899999999876 9999999999999999765
Q ss_pred --CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHhc
Q psy5288 113 --GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE--ENKSSANKCLIKIANYSALT 173 (186)
Q Consensus 113 --~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~--~~~~~~~~~~~~la~~y~~~ 173 (186)
.+++..+..+.+||.+|..+ |++++|+.+|++|++++... .+++....++.+|+.+...+
T Consensus 363 lg~~Hp~~a~~l~nLa~~~~~~-g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 363 FPGSHPVRGVQVMKVGKLQLHQ-GMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 57899999999999999996 99999999999999998873 34455567888998887654
No 121
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.20 E-value=4.1e-10 Score=88.22 Aligned_cols=136 Identities=10% Similarity=-0.003 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHHH---------HHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH-HHHHHHhcC-CHHHHHH
Q psy5288 32 GGNKTDEAIDLYVR---------AGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFV-DAANCYKKS-NPAEAIK 100 (186)
Q Consensus 32 ~~~~~~~A~~~y~~---------ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~-~a~~~y~~~-~~~~A~~ 100 (186)
..|++++|+++|.+ .|.++..+|++++|...|.++.++ +|......+. -...++... ++++|+.
T Consensus 113 ~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 113 YDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-----DEDATLTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp HTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CcCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45788888776544 577888899999999999888887 3433211111 112333333 7899999
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHH-
Q psy5288 101 AIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKA- 179 (186)
Q Consensus 101 ~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A- 179 (186)
+|+++++.... -+.++..+|.++.. +|++++|+..|++++.+.+.. ..++.++|.++...|+++++
T Consensus 188 ~~~~~l~~~p~------~~~~~~~la~~~~~-~g~~~eA~~~l~~al~~~p~~------~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 188 IFQEMADKCSP------TLLLLNGQAACHMA-QGRWEAAEGVLQEALDKDSGH------PETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp HHHHHHHHSCC------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHhCCC------cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCHHHH
Confidence 99999887432 25588999999999 499999999999999987654 36889999999999999874
Q ss_pred HHHHHh
Q psy5288 180 IKLYEQ 185 (186)
Q Consensus 180 ~~~~~~ 185 (186)
.+++++
T Consensus 255 ~~~~~~ 260 (291)
T 3mkr_A 255 NRYLSQ 260 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 567765
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.20 E-value=1.2e-09 Score=81.43 Aligned_cols=124 Identities=16% Similarity=0.103 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHcCChh
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS----NPAEAIKAIERAVEIHTDMGRFI 116 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~----~~~~A~~~~~~Al~i~~~~~~~~ 116 (186)
+.+..+|.+|...+++++|+.+|.++++. |+ ..++.++|.+|... ++++|+.+|++|++ .|+
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~----~g~-- 84 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GD----GDALALLAQLKIRNPQQADYPQARQLAEKAVE----AGS-- 84 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC----HHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHH----TTC--
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----CCC--
Confidence 34666788999999999999999999873 33 35677999999876 89999999999954 344
Q ss_pred HHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh----ccCHHHHHHHHHh
Q psy5288 117 MVAKHHENIAEIYEK----ELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSAL----TDHLDKAIKLYEQ 185 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~----~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~----~g~~~~A~~~~~~ 185 (186)
+..+.++|.+|.. . +++++|+.+|++|++.-+. ......+.+||.+|.. .+++++|+++|++
T Consensus 85 --~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~~~~----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 85 --KSGEIVLARVLVNRQAGA-TDVAHAITLLQDAARDSES----DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp --HHHHHHHHHHHTCGGGSS-CCHHHHHHHHHHHTSSTTS----HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCCCc-cCHHHHHHHHHHHHHcCCC----cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 4578999999986 5 8999999999999986321 1224688999999999 8899999999986
No 123
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.20 E-value=6e-10 Score=74.95 Aligned_cols=100 Identities=20% Similarity=0.203 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CCh
Q psy5288 79 AGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE-ENK 156 (186)
Q Consensus 79 aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~-~~~ 156 (186)
.+..+..+|.++... ++++|+.+|++++.+.... ..++..+|.+|... |++++|+.+|++++.+.+.. ...
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEK-GDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhccccchhH
Confidence 356677888888776 9999999999999875332 46889999999995 99999999999999998864 344
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 157 SSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 157 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.....++.++|.+|...|++++|+++|++
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 44467899999999999999999999976
No 124
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.19 E-value=3.5e-10 Score=81.59 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=67.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy5288 48 NLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIA 126 (186)
Q Consensus 48 ~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg 126 (186)
.++...++++.|.+.+.++..+ +|.. ...+..+|.+|... ++++|+++|++++++.+.. +.++.++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~-----~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg 148 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL-----NTVY-ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF------IRAYQSIG 148 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-----Cccc-hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh------hhHHHHHH
Confidence 3444555555555555555554 2222 24455778888877 9999999999999885433 45899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 127 EIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 127 ~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
.+|..+ |++++|+.+|++|+++.++
T Consensus 149 ~~~~~~-g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 149 LAYEGK-GLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHC-CCHHHHHHHHHHHHhCCcc
Confidence 999995 9999999999999998664
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.19 E-value=2.1e-10 Score=80.04 Aligned_cols=107 Identities=16% Similarity=0.199 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM 112 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~ 112 (186)
..-....+.+...|..+...|++++|+.+|.+++.+ +|.. ...+..+|.+|... ++++|+.+|++++.+....
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYD-ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCcc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 444567788899999999999999999999999987 4444 45566899999877 9999999999999886544
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 113 GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 113 ~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
...+..+|.+|.. +|++++|+.+|++++.+.+..
T Consensus 86 ------~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 86 ------PRFPFHAAECHLQ-LGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp ------THHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTC
T ss_pred ------cHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Confidence 2368899999999 599999999999999998854
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.18 E-value=1.2e-10 Score=83.83 Aligned_cols=110 Identities=14% Similarity=0.191 Sum_probs=60.8
Q ss_pred cCCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-HhcC-C
Q psy5288 31 TGGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANC-YKKS-N 94 (186)
Q Consensus 31 ~~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~-y~~~-~ 94 (186)
+..+++++|++.|.++ |.+|...|++++|+.+|.+++.+. |.. ...+..+|.+ |... +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~-~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GEN-AELYAALATVLYYQASQ 94 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSC-HHHHHHHHHHHHHHTTT
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC-HHHHHHHHHHHHHhcCC
Confidence 3446666666666555 455666666666666666666653 111 3345566666 5433 5
Q ss_pred H--HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 95 P--AEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 95 ~--~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
+ ++|+.++++++.+.... ..++..+|.+|... |++++|+.+|++++.+.+..
T Consensus 95 ~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSNE------ITALMLLASDAFMQ-ANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCCTT
T ss_pred cchHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHc-ccHHHHHHHHHHHHhhCCCC
Confidence 4 66666666666553221 23566666666663 66666666666666665543
No 127
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.18 E-value=6e-10 Score=87.45 Aligned_cols=83 Identities=7% Similarity=0.086 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhc
Q psy5288 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALT 173 (186)
Q Consensus 94 ~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~ 173 (186)
++++|+.+|++++++.... ..++..+|.++... |++++|+..|++|+....- .+......|..++.++...
T Consensus 184 ~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~~l--~p~~~~~l~~~~~~~~~~~ 254 (308)
T 2ond_A 184 DKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSL--PPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp CHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTT-CCHHHHHHHHHHHHHSSSS--CGGGCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHc
Confidence 5566666666666554322 34566666666663 7777777777777664210 0111135666667777777
Q ss_pred cCHHHHHHHHHh
Q psy5288 174 DHLDKAIKLYEQ 185 (186)
Q Consensus 174 g~~~~A~~~~~~ 185 (186)
|++++|..++++
T Consensus 255 g~~~~a~~~~~~ 266 (308)
T 2ond_A 255 GDLASILKVEKR 266 (308)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 777777766654
No 128
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.18 E-value=5.7e-11 Score=87.29 Aligned_cols=122 Identities=18% Similarity=0.118 Sum_probs=89.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhH----------HH
Q psy5288 51 KLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIM----------VA 119 (186)
Q Consensus 51 ~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~----------~a 119 (186)
...|+++++.+.+...... ....+..+...|.++... ++++|+.+|++++++.....+... ..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------CCCSGGGCCHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3345555555544433321 234466777888888766 999999999999998766543222 25
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 120 KHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.++.++|.+|.. +|++++|+.++++++.+.+.. ..++.++|.+|..+|++++|+++|++
T Consensus 89 ~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 89 SCNLNLATCYNK-NKDYPKAIDHASKVLKIDKNN------VKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 789999999999 499999999999999986543 36889999999999999999999976
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.18 E-value=2e-09 Score=74.98 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=29.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHT 110 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~ 110 (186)
|.++...|++++|+.+|.+++.+ +|... ..+..+|.+|... ++++|+.+|++++++..
T Consensus 59 g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 59 GACRQSLGLYEQALQSYSYGALM-----DINEP-RFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc-----CCCCc-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34455555555555555555554 22221 2333555555544 55555555555555554
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.18 E-value=2.6e-11 Score=96.99 Aligned_cols=120 Identities=14% Similarity=0.115 Sum_probs=97.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC---------hhHHHHHH
Q psy5288 53 GKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGR---------FIMVAKHH 122 (186)
Q Consensus 53 ~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~---------~~~~a~~~ 122 (186)
++++++|+++|.++.+. ....+..+.++|.+|... ++++|+.+|++|+.+...... ....+.++
T Consensus 126 L~~~~~A~~~~~~a~~~------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp EEEEECCCCGGGCCHHH------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHH------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH
Confidence 45566777777766665 234466777889888776 999999999999999876642 12336799
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 123 ENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 123 ~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.++|.+|.. +|++++|+.+|++|+.+.+.. ..++.++|.+|..+|++++|+..|++
T Consensus 200 ~nla~~~~~-~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~ 255 (336)
T 1p5q_A 200 LNLAMCHLK-LQAFSAAIESCNKALELDSNN------EKGLSRRGEAHLAVNDFELARADFQK 255 (336)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999 499999999999999997653 37889999999999999999999986
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.17 E-value=1.7e-09 Score=76.28 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=26.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Q psy5288 48 NLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHT 110 (186)
Q Consensus 48 ~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~ 110 (186)
.++...|++++|+.+|.+++.+ +|... ..+.++|.+|... ++++|+.+|++++++..
T Consensus 63 ~~~~~~g~~~~A~~~~~~al~l-----~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 63 ACRQAMGQYDLAIHSYSYGAVM-----DIXEP-RFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----STTCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHhc-----CCCCc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3444555555555555555544 22221 2233445555444 55555555555544443
No 132
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.16 E-value=5.4e-10 Score=76.58 Aligned_cols=121 Identities=19% Similarity=0.238 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhH
Q psy5288 39 AIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIM 117 (186)
Q Consensus 39 A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~ 117 (186)
....+...|..+...|++++|+.+|.+++.+ +|.. ...+..+|.+|... ++++|+.++++++.+....
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----- 76 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDGQS----- 76 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-----
Confidence 3567888899999999999999999999998 3333 46778999999887 9999999999999876442
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhc
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALT 173 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~ 173 (186)
..++..+|.+|.. +|++++|+.+|++++.+.+....... ..+...+..+..+.
T Consensus 77 -~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~-~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 77 -VKAHFFLGQCQLE-MESYDEAIANLQRAYSLAKEQRLNFG-DDIPSALRIAKKKR 129 (137)
T ss_dssp -HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCCT-THHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHChhHHHHHH-HHHHHHHHHHHHHH
Confidence 4589999999999 49999999999999999886321111 23444445544443
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.16 E-value=2.1e-09 Score=71.53 Aligned_cols=119 Identities=19% Similarity=0.305 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF 115 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~ 115 (186)
......+...|.++...|++++|+.+|.++++.. +.. ...+..+|.++... ++++|+.++++++++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--- 76 (125)
T 1na0_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--- 76 (125)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---
Confidence 3456778888999999999999999999999872 322 45677889998877 9999999999998764322
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcc
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTD 174 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g 174 (186)
...+..+|.++... |++++|+.+|++++.+.+.. ...+..++.++...|
T Consensus 77 ---~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 77 ---AEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNN------AEAKQNLGNAKQKQG 125 (125)
T ss_dssp ---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhcc
Confidence 45788999999994 99999999999999986543 357788888887654
No 134
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.15 E-value=3.1e-09 Score=89.32 Aligned_cols=116 Identities=9% Similarity=-0.003 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cC-ChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK-NN-NKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTD 111 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~-~~-~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~ 111 (186)
++...+..+..+|.+|..+|+|++|..+|.+++.++.+ +| +....+..+.++|.+|... ++++|...|++|++|...
T Consensus 346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~ 425 (490)
T 3n71_A 346 TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLV 425 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 33444455555578899999999999999999999986 44 4446788899999999987 999999999999999966
Q ss_pred c-C-ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q psy5288 112 M-G-RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 112 ~-~-~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~ 151 (186)
. | +++..+....+++.++..+ +.+++|...|.++.+-.-
T Consensus 426 ~lG~~Hp~~~~~~~~l~~~~~e~-~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 426 THGPSHPITKDLEAMRMQTEMEL-RMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HTCTTSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 5 4 7889999999999999984 999999999999987653
No 135
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.14 E-value=1e-09 Score=85.91 Aligned_cols=116 Identities=14% Similarity=0.084 Sum_probs=81.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh-hHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF-IMVAKHHEN 124 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~-~~~a~~~~~ 124 (186)
|.++...|++++|+++|.+ + ....++..+|.+|... ++++|+..+++++++... +. ...+..+
T Consensus 108 a~~~~~~g~~~~Al~~l~~--------~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~--~~~~~l~~a~-- 172 (291)
T 3mkr_A 108 ASIYFYDQNPDAALRTLHQ--------G---DSLECMAMTVQILLKLDRLDLARKELKKMQDQDED--ATLTQLATAW-- 172 (291)
T ss_dssp HHHHHHTTCHHHHHHHHTT--------C---CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH--
T ss_pred HHHHHHCCCHHHHHHHHhC--------C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC--cHHHHHHHHH--
Confidence 4556666666666666655 1 1124566788888876 899999999998877422 11 1111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 125 IAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 125 lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++... |++++|+..|+++++.++.. ...+.++|.++..+|++++|++.|++
T Consensus 173 -~~l~~~~-~~~~eA~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 173 -VSLAAGG-EKLQDAYYIFQEMADKCSPT------LLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp -HHHHHCT-THHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHhCc-hHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2333443 89999999999999986643 36889999999999999999999986
No 136
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.14 E-value=2.7e-11 Score=101.42 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy5288 43 YVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKH 121 (186)
Q Consensus 43 y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~ 121 (186)
+...|..+...|++++|+++|.+++++ ++.. +..+.++|.+|... ++++|+.+|++|+++... -+..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~-----~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~ 76 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIEL-----NPSN-AIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKG 76 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHH
Confidence 344456677788999999999999987 3333 56777999999887 999999999999988432 2568
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH--HHhccCHHHHHHHHH
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANY--SALTDHLDKAIKLYE 184 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~--y~~~g~~~~A~~~~~ 184 (186)
+.++|.+|..+ |++++|+.+|++|+.+.++.. .++.+++.+ +...|++++|++.++
T Consensus 77 ~~~lg~~~~~~-g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 77 YYRRAASNMAL-GKFRAALRDYETVVKVKPHDK------DAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCT------THHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999995 999999999999999976543 355667777 888999999999987
No 137
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.14 E-value=9.3e-11 Score=93.87 Aligned_cols=135 Identities=16% Similarity=0.143 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc------CChhHH-----HHHHHHHHHHHhcC-CHHHHHHHHHHH
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKN------NNKHDA-----GLCFVDAANCYKKS-NPAEAIKAIERA 105 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~------~~~~~a-----a~~~~~a~~~y~~~-~~~~A~~~~~~A 105 (186)
+.+..+...|+.+...|++++|+.+|.+++.+.... ++...+ ..++.++|.+|... ++++|+.+|+++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456667788999999999999999999999873210 011111 13788999999887 999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH-hccCHHHHHHHHH
Q psy5288 106 VEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSA-LTDHLDKAIKLYE 184 (186)
Q Consensus 106 l~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~-~~g~~~~A~~~~~ 184 (186)
+++.... ..++.++|.+|.. +|++++|+.+|++++.+.+.. ..++.+++.+.. ..+..+++...|.
T Consensus 257 l~~~p~~------~~a~~~lg~a~~~-~g~~~~A~~~l~~al~l~p~~------~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 257 LTEEEKN------PKALFRRGKAKAE-LGQMDSARDDFRKAQKYAPDD------KAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp HHHCTTC------HHHHHHHHHHHHT-TTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHhCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9875432 4589999999999 599999999999999987653 246667777744 4566777777765
Q ss_pred h
Q psy5288 185 Q 185 (186)
Q Consensus 185 ~ 185 (186)
+
T Consensus 324 ~ 324 (338)
T 2if4_A 324 G 324 (338)
T ss_dssp -
T ss_pred H
Confidence 4
No 138
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.14 E-value=8.1e-10 Score=75.67 Aligned_cols=93 Identities=18% Similarity=0.115 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHH
Q psy5288 80 GLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSS 158 (186)
Q Consensus 80 a~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~ 158 (186)
+..+..+|.++... ++++|+.+|++++.+.... ..++..+|.++... |++++|+.+|++++.+.+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p~~----- 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKM-QQPEQALADCRRALELDGQS----- 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCchh-----
Confidence 56677888888876 9999999999999886443 45899999999994 99999999999999987653
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 159 ANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 159 ~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++.++|.+|..+|++++|+.+|++
T Consensus 77 -~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 77 -VKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 36889999999999999999999976
No 139
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.14 E-value=5.5e-10 Score=92.55 Aligned_cols=91 Identities=12% Similarity=0.073 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHHHHHc-C-ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHH
Q psy5288 94 NPAEAIKAIERAVEIHTDM-G-RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE--ENKSSANKCLIKIANY 169 (186)
Q Consensus 94 ~~~~A~~~~~~Al~i~~~~-~-~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~--~~~~~~~~~~~~la~~ 169 (186)
++++|+..|++++++.... | ++...+.++.+||.+|..+ |+|++|+.+|++++.++++. .+++..+..+.|||.+
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~-g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM-QDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 7899999999999998654 4 6789999999999999995 99999999999999998873 3556667899999999
Q ss_pred HHhccCHHHHHHHHHh
Q psy5288 170 SALTDHLDKAIKLYEQ 185 (186)
Q Consensus 170 y~~~g~~~~A~~~~~~ 185 (186)
|..+|+|++|+.+|++
T Consensus 392 ~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 392 YMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHH
Confidence 9999999999999986
No 140
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.14 E-value=6.8e-11 Score=102.97 Aligned_cols=134 Identities=10% Similarity=-0.046 Sum_probs=108.5
Q ss_pred CCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHH
Q psy5288 32 GGNKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPA 96 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a--------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~ 96 (186)
..|++++|++.|.++ |.++...|++++|+.+|.+++++ +|.. ...+.++|.+|... +++
T Consensus 445 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~-~~~~~~lg~~~~~~g~~~ 518 (681)
T 2pzi_A 445 DLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT-----FPGE-LAPKLALAATAELAGNTD 518 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTC-SHHHHHHHHHHHHHTCCC
T ss_pred hcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-hHHHHHHHHHHHHcCChH
Confidence 447999999999888 66788999999999999999998 4444 45566999999876 888
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcc--
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTD-- 174 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g-- 174 (186)
+ +.+|++|+++.... ...+.++|.+|.. +|++++|+.+|++|+.+.+.. ...+.++|.++...+
T Consensus 519 ~-~~~~~~al~~~P~~------~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~------~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 519 E-HKFYQTVWSTNDGV------ISAAFGLARARSA-EGDRVGAVRTLDEVPPTSRHF------TTARLTSAVTLLSGRST 584 (681)
T ss_dssp T-TCHHHHHHHHCTTC------HHHHHHHHHHHHH-TTCHHHHHHHHHTSCTTSTTH------HHHHHHHHHHTC-----
T ss_pred H-HHHHHHHHHhCCch------HHHHHHHHHHHHH-cCCHHHHHHHHHhhcccCccc------HHHHHHHHHHHHccCCC
Confidence 9 99999999875443 3478999999999 599999999999999986542 367889999987644
Q ss_pred ------CHHHHHHHHHh
Q psy5288 175 ------HLDKAIKLYEQ 185 (186)
Q Consensus 175 ------~~~~A~~~~~~ 185 (186)
++.+|+..+.+
T Consensus 585 ~~~~~~~~~~A~~~l~~ 601 (681)
T 2pzi_A 585 SEVTEEQIRDAARRVEA 601 (681)
T ss_dssp --CCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 47888877754
No 141
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.13 E-value=6.2e-11 Score=78.30 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHH
Q psy5288 80 GLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSS 158 (186)
Q Consensus 80 a~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~ 158 (186)
+..+..+|.++... ++++|+.+|++++++.... +.++.++|.+|.. +|++++|+.+|++++.+.+..+....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 45567788888766 8999999999998875433 4578899999999 49999999999999999887655555
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 159 ANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 159 ~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...++..+|.++..+|+++.|++.|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 667889999999999998888776654
No 142
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.10 E-value=1.5e-10 Score=96.37 Aligned_cols=120 Identities=16% Similarity=0.134 Sum_probs=96.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC---------hhHHHHHH
Q psy5288 53 GKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGR---------FIMVAKHH 122 (186)
Q Consensus 53 ~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~---------~~~~a~~~ 122 (186)
++++++|+++|.++.+. ....+..+.+.|.+|... ++++|+.+|++|+++...... ....+.++
T Consensus 247 l~~~~~A~~~~~~~~~~------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKE------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 320 (457)
T ss_dssp EEEEECCCCGGGSCHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHH------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH
Confidence 34455666666665554 234466777888888776 999999999999999876531 22346799
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 123 ENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 123 ~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.++|.+|.. +|++++|+.+|++|+.+.+.. ...+.++|.+|..+|+|++|+..|++
T Consensus 321 ~nla~~~~~-~g~~~~A~~~~~~al~~~p~~------~~a~~~~g~a~~~~g~~~~A~~~~~~ 376 (457)
T 1kt0_A 321 LNLAMCYLK-LREYTKAVECCDKALGLDSAN------EKGLYRRGEAQLLMNEFESAKGDFEK 376 (457)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-hcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999 599999999999999997653 37889999999999999999999986
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.09 E-value=4e-10 Score=76.90 Aligned_cols=100 Identities=11% Similarity=0.002 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHH
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMV 118 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~ 118 (186)
...+...|..+...|++++|+.+|.+++.+ +|.. ...+..+|.++... ++++|+.+|++++++....
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------ 84 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQK-----EPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------ 84 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Confidence 356777888888888888888888888887 4444 45556788887766 7888888888887775443
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
...+..+|.+|... |++++|+.+|++++.+.+.
T Consensus 85 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 85 IAVHAALAVSHTNE-HNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcC
Confidence 23677788888874 8888888888888877553
No 144
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=3.1e-09 Score=73.24 Aligned_cols=118 Identities=17% Similarity=0.134 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChh
Q psy5288 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFI 116 (186)
Q Consensus 38 ~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~ 116 (186)
.....+...|..+...|++++|+.+|.+++++. .+.......+..+|.+|... ++++|+.++++++.+....
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---- 98 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD---- 98 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC----
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC----
Confidence 346677888999999999999999999998862 12222467788999999877 9999999999999874332
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Q psy5288 117 MVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSA 171 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~ 171 (186)
..++..+|.+|... |++++|+.+|++++.+.+.. ..++..++.+..
T Consensus 99 --~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~ 144 (148)
T 2dba_A 99 --VKALYRRSQALEKL-GRLDQAVLDLQRCVSLEPKN------KVFQEALRNISG 144 (148)
T ss_dssp --HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHh
Confidence 56789999999995 99999999999999986653 245555555543
No 145
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.08 E-value=5.8e-09 Score=86.80 Aligned_cols=99 Identities=20% Similarity=0.260 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHH------------HHHHHh----cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhc----
Q psy5288 33 GNKTDEAIDLYVRA------------GNLFKL----GKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK---- 92 (186)
Q Consensus 33 ~~~~~~A~~~y~~a------------g~~~~~----~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~---- 92 (186)
.+++++|+.+|.++ |.+|.. .+++++|+++|.++++. |+ ..++..+|.+|..
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GL----PQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSS
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCC
Confidence 45677777776665 445665 66777777777776652 22 2334455555554
Q ss_pred C-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHH
Q psy5288 93 S-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK----ELEDQEKAIDHYQHAAD 148 (186)
Q Consensus 93 ~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~----~lg~~~~Ai~~y~kA~~ 148 (186)
. ++++|+.+|++|++. |+ +..+..+|.+|.. . +++++|+.+|++|++
T Consensus 128 ~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQ----GR----DSGQQSMGDAYFEGDGVT-RDYVMAREWYSKAAE 179 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHH
Confidence 2 556666666665432 22 2344455555543 2 455555555555544
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.08 E-value=2e-09 Score=70.99 Aligned_cols=112 Identities=17% Similarity=0.162 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHH
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMV 118 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~ 118 (186)
++.+...|..+...|++++|+.+|.+++... |.. ...+..+|.+|... ++++|+.++++++++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------ 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-----PHN-HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW------ 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCc-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc------
Confidence 4567778889999999999999999999873 332 45677889888776 9999999999999875432
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYS 170 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y 170 (186)
..++..+|.++... |++++|+.+|++++.+.+.. ...+..++.+.
T Consensus 72 ~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~ 116 (118)
T 1elw_A 72 GKGYSRKAAALEFL-NRFEEAKRTYEEGLKHEANN------PQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCTTC------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hhHHHHHHHHHHHHHcCCCC------HHHHHHHHHhh
Confidence 45788999999994 99999999999999986543 24556666554
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.07 E-value=3.3e-09 Score=69.91 Aligned_cols=93 Identities=17% Similarity=0.154 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHH
Q psy5288 80 GLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSS 158 (186)
Q Consensus 80 a~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~ 158 (186)
+..+...|.++... ++++|+.+|++++.+.... ..++..+|.++... |++++|+.++++++.+.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~----- 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKK-GDYQKAYEDGCKTVDLKPDW----- 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCccc-----
Confidence 45677888888766 9999999999999875432 45889999999995 99999999999999986643
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 159 ANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 159 ~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++.++|.+|...|++++|+++|++
T Consensus 72 -~~~~~~~a~~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 72 -GKGYSRKAAALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 36889999999999999999999975
No 148
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.06 E-value=6.7e-10 Score=94.21 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=81.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q psy5288 53 GKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK 131 (186)
Q Consensus 53 ~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~ 131 (186)
.|++++|+.+|.+++++. +.. ...+..+|.+|... ++++|+.+|++++++.... +.++.++|.+|..
T Consensus 2 ~g~~~~A~~~~~~al~~~-----p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~ 69 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-----PQD-FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH------PEAVARLGRVRWT 69 (568)
T ss_dssp ------------------------CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC------HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 467888999998888763 332 45677899998876 9999999999999875433 5588999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 132 ELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 132 ~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
. |++++|+.+|++++.+.++. ...+.++|.+|...|++++|++.|++
T Consensus 70 ~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 116 (568)
T 2vsy_A 70 Q-QRHAEAAVLLQQASDAAPEH------PGIALWLGHALEDAGQAEAAAAAYTR 116 (568)
T ss_dssp T-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 99999999999999986653 36889999999999999999999976
No 149
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.05 E-value=3.6e-09 Score=74.31 Aligned_cols=95 Identities=21% Similarity=0.131 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCh
Q psy5288 78 DAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENK 156 (186)
Q Consensus 78 ~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~ 156 (186)
..+..+..+|.++... ++++|+.+|++++.+.... ..++..+|.++... |++++|+.+|++++.+.+..
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~--- 80 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKY--- 80 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCccc---
Confidence 4567778888888776 9999999999999875433 56889999999994 99999999999999986643
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 157 SSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 157 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++.++|.+|...|++++|+++|++
T Consensus 81 ---~~~~~~~a~~~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 81 ---IKGYYRRAASNMALGKFRAALRDYET 106 (166)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 36889999999999999999999976
No 150
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.05 E-value=3.2e-09 Score=71.85 Aligned_cols=105 Identities=16% Similarity=0.009 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHH
Q psy5288 42 LYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAK 120 (186)
Q Consensus 42 ~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~ 120 (186)
.+...|..+...|++++|+..|.++++.. .+.......+..+|.+|... ++++|+.+|++++.+.... .....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~ 77 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---DKAAG 77 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---TTHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---cccHH
Confidence 35678899999999999999999988862 22223457788999999877 9999999999998876443 33567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
++..+|.+|... |++++|+.+|++++..+++.
T Consensus 78 ~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 78 GLLKLGLSQYGE-GKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCC
Confidence 889999999984 99999999999999987653
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.05 E-value=1.3e-09 Score=73.70 Aligned_cols=96 Identities=19% Similarity=0.148 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q psy5288 77 HDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEEN 155 (186)
Q Consensus 77 ~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~ 155 (186)
......+..+|.++... ++++|+.+|++++++.... ..++..+|.+|... |++++|+.+|++++.+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~-- 83 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKL-LEFQLALKDCEECIQLEPTF-- 83 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTT-TCHHHHHHHHHHHHHHCTTC--
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCc--
Confidence 34566777889888776 9999999999998764332 56899999999984 99999999999999986543
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 156 KSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 156 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++.++|.+|...|++++|+++|++
T Consensus 84 ----~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 84 ----IKGYTRKAAALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 36889999999999999999999976
No 152
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.04 E-value=1.1e-08 Score=85.12 Aligned_cols=128 Identities=12% Similarity=0.204 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHH------------HHHHHhc-----CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC--
Q psy5288 33 GNKTDEAIDLYVRA------------GNLFKLG-----KKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-- 93 (186)
Q Consensus 33 ~~~~~~A~~~y~~a------------g~~~~~~-----g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-- 93 (186)
.+++++|+.+|.++ |.+|... +++++|+.+|.++++. +++ .++.++|.+|...
T Consensus 272 ~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~----~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDA----TAQANLGAIYFRLGS 343 (490)
T ss_dssp SCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCH----HHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCC
Confidence 34555665555554 3344444 5566666666655542 222 3455677777653
Q ss_pred --CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy5288 94 --NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK----ELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIA 167 (186)
Q Consensus 94 --~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~----~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la 167 (186)
++++|+++|++|++. ++ +..+.++|.+|.. . +++++|+.+|++|++. ++ ...+.++|
T Consensus 344 ~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~A~~~----~~----~~a~~~Lg 406 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAK----GE----KAAQFNLGNALLQGKGVK-KDEQQAAIWMRKAAEQ----GL----SAAQVQLG 406 (490)
T ss_dssp HHHHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT----TC----HHHHHHHH
T ss_pred cccHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHhC----CC----HHHHHHHH
Confidence 677888888888754 33 4578889999887 6 7899999999998874 22 35778899
Q ss_pred HHHHh----ccCHHHHHHHHHh
Q psy5288 168 NYSAL----TDHLDKAIKLYEQ 185 (186)
Q Consensus 168 ~~y~~----~g~~~~A~~~~~~ 185 (186)
.+|.. .+|+++|+..|++
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHH
Confidence 99988 8999999998875
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.04 E-value=5.8e-09 Score=69.89 Aligned_cols=96 Identities=17% Similarity=0.103 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC
Q psy5288 77 HDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEEN 155 (186)
Q Consensus 77 ~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~ 155 (186)
......+..+|.++... ++++|+.+|++++.+.... ..++..+|.++... |++++|+.++++++.+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~-- 79 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKL-GNYAGAVQDCERAICIDPAY-- 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC--
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHh-hchHHHHHHHHHHHhcCccC--
Confidence 34456777888888766 9999999999999875332 55889999999995 99999999999999986543
Q ss_pred hHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 156 KSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 156 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++..+|.+|...|++++|+++|++
T Consensus 80 ----~~~~~~~~~~~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 80 ----SKAYGRMGLALSSLNKHVEAVAYYKK 105 (131)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 36889999999999999999999976
No 154
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.03 E-value=3.2e-09 Score=87.89 Aligned_cols=104 Identities=8% Similarity=-0.035 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc--CCh
Q psy5288 81 LCFVDAANCYKKSNPAEAIKAIERAVEIHTDM--GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE--ENK 156 (186)
Q Consensus 81 ~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~--~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~--~~~ 156 (186)
.....+..++...++++|+..+++++++.... .++...+.++.+||.+|..+ |+|++|+.++++++.++++. ..+
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~-g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL-GLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 33444555555669999999999999987543 46788999999999999996 99999999999999999873 355
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 157 SSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 157 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+..+..+.+||.+|..+|++++|+.+|++
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 66678999999999999999999999986
No 155
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.03 E-value=7.8e-09 Score=69.90 Aligned_cols=60 Identities=8% Similarity=0.049 Sum_probs=31.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIH 109 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~ 109 (186)
|.++...|++++|+.+|.++++... +.......+..+|.+|... ++++|+.+|+++++.+
T Consensus 46 g~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 46 GESYYATRNFQLAEAQFRDLVSRYP---THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT---TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhccHHHHHHHHHHHHHHCC---CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3345555666666666666555421 1111244455556665554 5666666666555544
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.03 E-value=2.7e-09 Score=70.95 Aligned_cols=97 Identities=24% Similarity=0.365 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q psy5288 76 KHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE 154 (186)
Q Consensus 76 ~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~ 154 (186)
+...+..+..+|.++... ++++|+.++++++.+.... ..++..+|.++... |++++|+.+|++++.+.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~- 76 (125)
T 1na0_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNN- 76 (125)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC-
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc------HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCcc-
Confidence 444567778889888876 9999999999998874321 45788999999995 99999999999999985543
Q ss_pred ChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 155 NKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 155 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++..+|.+|...|++++|+.+|++
T Consensus 77 -----~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 77 -----AEAWYNLGNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 36788999999999999999999976
No 157
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.03 E-value=8.1e-09 Score=72.07 Aligned_cols=104 Identities=15% Similarity=0.250 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH--
Q psy5288 55 KWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK-- 131 (186)
Q Consensus 55 ~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~-- 131 (186)
++++|+.+|.++++. |++... +|.+|... .+++|+++|++|.+. |+ +..+.++|.+|..
T Consensus 10 d~~~A~~~~~~aa~~----g~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 10 DLKKAIQYYVKACEL----NEMFGC------LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHT----TCTTHH------HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHcC----CCHhhh------HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHcCC
Confidence 566777777777653 333322 77777765 677788888888764 44 4567788888876
Q ss_pred --hcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh----ccCHHHHHHHHHh
Q psy5288 132 --ELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSAL----TDHLDKAIKLYEQ 185 (186)
Q Consensus 132 --~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~----~g~~~~A~~~~~~ 185 (186)
. +++++|+.+|++|.+. ++ .....+||.+|.. .+|+++|+++|++
T Consensus 72 g~~-~d~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 72 YVK-KDLRKAAQYYSKACGL----ND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp SSC-CCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CCC-ccHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 5 7888888888888764 22 2566788888887 7888888888765
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.03 E-value=5e-10 Score=73.38 Aligned_cols=92 Identities=16% Similarity=0.103 Sum_probs=67.1
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHH
Q psy5288 83 FVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANK 161 (186)
Q Consensus 83 ~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~ 161 (186)
+..+|.++... ++++|+.+|++++++.... ..++..+|.++... |++++|+.+|++++.+.+.... ..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~----~~ 77 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNL-ERYEEAVDCYNYVINVIEDEYN----KD 77 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSCCTTC----HH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCcccch----HH
Confidence 44566666655 7788888888877664321 34677888888884 8888888888888887654101 35
Q ss_pred HHHHHHHHHHhc-cCHHHHHHHHHh
Q psy5288 162 CLIKIANYSALT-DHLDKAIKLYEQ 185 (186)
Q Consensus 162 ~~~~la~~y~~~-g~~~~A~~~~~~ 185 (186)
++.++|.+|..+ |++++|+++|++
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEAR 102 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 778888888888 888888888875
No 159
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.02 E-value=2.5e-09 Score=76.75 Aligned_cols=115 Identities=13% Similarity=0.142 Sum_probs=88.6
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-
Q psy5288 51 KLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEI- 128 (186)
Q Consensus 51 ~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~- 128 (186)
...|++++|+.++.+++.. +|.. ...+..+|.+|... ++++|+.+|++++.+.... ..++..+|.+
T Consensus 21 ~~~~~~~~A~~~~~~al~~-----~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l 88 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA-----NPQN-SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVL 88 (177)
T ss_dssp C-----CCCCHHHHHHHHH-----CCSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHh-----CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHH
Confidence 4578899999999999987 3433 35677899999876 9999999999999987543 4578899999
Q ss_pred HHHhcCCH--HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH-HhccCHHHHHHHHHh
Q psy5288 129 YEKELEDQ--EKAIDHYQHAADCYAGEENKSSANKCLIKIANYS-ALTDHLDKAIKLYEQ 185 (186)
Q Consensus 129 y~~~lg~~--~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y-~~~g~~~~A~~~~~~ 185 (186)
+... |++ ++|+.+|++++.+.+.. ..++..+|.+| .. |++++|+.+|++
T Consensus 89 ~~~~-~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~ 140 (177)
T 2e2e_A 89 YYQA-SQHMTAQTRAMIDKALALDSNE------ITALMLLASDAFMQ-ANYAQAIELWQK 140 (177)
T ss_dssp HHHT-TTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHhc-CCcchHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHc-ccHHHHHHHHHH
Confidence 7774 999 99999999999987653 25666677665 44 889999998875
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.01 E-value=2.1e-09 Score=73.27 Aligned_cols=88 Identities=16% Similarity=0.056 Sum_probs=56.3
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-cCChHHHH
Q psy5288 83 FVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG-EENKSSAN 160 (186)
Q Consensus 83 ~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~-~~~~~~~~ 160 (186)
+.+.|.++... ++++|+.+|++++.+.... +..+..+|.++... |++++|+.+|++|+.+.+. .......+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~~~~~la 92 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKDIAVHAALA 92 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34556555544 7788888888877765443 34677788887774 8888888888888877653 33334445
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 161 KCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 161 ~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
.++...|. +++|+..|+
T Consensus 93 ~~~~~~g~-------~~~A~~~~~ 109 (121)
T 1hxi_A 93 VSHTNEHN-------ANAALASLR 109 (121)
T ss_dssp HHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHcCC-------HHHHHHHHH
Confidence 56666654 455555554
No 161
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.01 E-value=4.2e-09 Score=85.40 Aligned_cols=99 Identities=19% Similarity=0.099 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC----------ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy5288 80 GLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG----------RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAAD 148 (186)
Q Consensus 80 a~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~----------~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~ 148 (186)
+..+.+.|..+... ++++|+.+|++|+++..... .....+.++.++|.+|.. +|++++|+.+|++|+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHH
Confidence 45677888888766 99999999999999876531 345667899999999999 5999999999999999
Q ss_pred HHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 149 CYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 149 l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+.+.. ..++.++|.+|..+|++++|++.|++
T Consensus 302 ~~p~~------~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 302 IDPSN------TKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp TCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCchh------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 86543 47889999999999999999999976
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.00 E-value=8.6e-10 Score=85.87 Aligned_cols=101 Identities=23% Similarity=0.322 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHH
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMV 118 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~ 118 (186)
...+...|..+...|++++|+.+|.+++.+ +|.. ...+.++|.+|... ++++|+..+++++++....
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------ 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDGQS------ 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------
Confidence 356777889999999999999999999998 3433 45677999999887 9999999999998774322
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
..++..+|.+|.. +|++++|+.+|++++.+.++.
T Consensus 72 ~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 72 VKAHFFLGQCQLE-MESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccc
Confidence 4578999999999 599999999999999998854
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=9.5e-09 Score=70.74 Aligned_cols=97 Identities=22% Similarity=0.117 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChH
Q psy5288 79 AGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKS 157 (186)
Q Consensus 79 aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~ 157 (186)
.+..+...|.++... ++++|+.+|++++++. .+......++..+|.+|... |++++|+.+|++++.+.+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~---- 98 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKL-EDYDKAETEASKAIEKDGGD---- 98 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTSCC----
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCccC----
Confidence 356677888888766 9999999999998753 23344578899999999995 99999999999999986643
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 158 SANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 158 ~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++.++|.+|...|++++|+.+|++
T Consensus 99 --~~~~~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 99 --VKALYRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36889999999999999999999976
No 164
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=3.2e-09 Score=78.77 Aligned_cols=112 Identities=16% Similarity=0.187 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHH
Q psy5288 39 AIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMV 118 (186)
Q Consensus 39 A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~ 118 (186)
.++.+..-|..+...|++++|+.+|.+++.+ +|......+. .+ . .......
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~-~~-----~------------------~~~~~~~ 53 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL-----NIDRTEMYYW-TN-----V------------------DKNSEIS 53 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CHHHHHHHHH-HH-----S------------------CTTSHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCChHHHHH-hh-----h------------------cchhhhh
Confidence 3556677788888888888888888888887 5554433221 11 1 0112223
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
.....++|.+|... |++++|+.+|++++.+.++. ..++.++|.+|...|++++|+++|+++
T Consensus 54 ~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~a 114 (208)
T 3urz_A 54 SKLATELALAYKKN-RNYDKAYLFYKELLQKAPNN------VDCLEACAEMQVCRGQEKDALRMYEKI 114 (208)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556799999995 99999999999999997754 378999999999999999999999863
No 165
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.99 E-value=1.2e-08 Score=93.79 Aligned_cols=113 Identities=12% Similarity=0.129 Sum_probs=76.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH-------------HHc
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIH-------------TDM 112 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~-------------~~~ 112 (186)
|..+...|++++|+++|.++ ++ ...|.+.+.++... ++++|+++|+.|.+.. .+.
T Consensus 1112 AKAql~~G~~kEAIdsYiKA-------dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA-------DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 1180 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc-------CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhh
Confidence 45555555555555555444 11 23444567777766 7888888887766432 222
Q ss_pred CChhHHHH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 113 GRFIMVAK--------HHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 113 ~~~~~~a~--------~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
++...... .+.++|..+.+. |+|++|+.+|.+| ..|.++|.+|.++|+|++|++++.
T Consensus 1181 ~rleele~fI~~~n~ad~~~iGd~le~e-g~YeeA~~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1181 NRLAELEEFINGPNNAHIQQVGDRCYDE-KMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred cCHHHHHHHHhCCCHHHHHHHHHHHHhc-CCHHHHHHHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 33332222 345799999985 9999999999986 367888999999999999999987
Q ss_pred h
Q psy5288 185 Q 185 (186)
Q Consensus 185 ~ 185 (186)
+
T Consensus 1246 K 1246 (1630)
T 1xi4_A 1246 K 1246 (1630)
T ss_pred H
Confidence 5
No 166
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=2.8e-09 Score=83.15 Aligned_cols=125 Identities=9% Similarity=-0.021 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHH
Q psy5288 42 LYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAK 120 (186)
Q Consensus 42 ~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~ 120 (186)
.+...|..+...|++++|+..|.+++.+ +|... ..+..+|.++... ++++|+..+++++.... + ...
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~P~~~-~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~---~~~ 186 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQL-----SNQNG-EIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---D---TRY 186 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTSCH-HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---S---HHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCcch-hHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---c---hHH
Confidence 3456678889999999999999999998 45554 5567899999877 99999999999876543 1 223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.....+..+..+ ++.++|+..|++++...++. ...+.++|.+|...|++++|+..|++
T Consensus 187 ~~~~~~~~l~~~-~~~~~a~~~l~~al~~~P~~------~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 187 QGLVAQIELLXQ-AADTPEIQQLQQQVAENPED------AALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp HHHHHHHHHHHH-HTSCHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-cccCccHHHHHHHHhcCCcc------HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 455666667774 88999999999999997754 36889999999999999999999976
No 167
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.96 E-value=6.8e-10 Score=74.85 Aligned_cols=90 Identities=9% Similarity=0.027 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q psy5288 53 GKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSN-PAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK 131 (186)
Q Consensus 53 ~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~-~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~ 131 (186)
+|++++|+.+|.+++++. . +.......+..+|.+|.... +++|+.+|++++++.+.. ..++..+|.++..
T Consensus 3 ~g~~~~A~~~~~~al~~~--~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASG--L-QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLYN 73 (117)
T ss_dssp ----CCCHHHHHHHHSSC--C-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcC--C-CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHH
Confidence 566777777777776641 0 02334556667777777666 567777777776664433 3466667777776
Q ss_pred hcCCHHHHHHHHHHHHHHHhc
Q psy5288 132 ELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 132 ~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
+|++++|+.+|++++...+.
T Consensus 74 -~g~~~~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 74 -LGRYEQGVELLLKIIAETSD 93 (117)
T ss_dssp -HTCHHHHHHHHHHHHHHHCC
T ss_pred -cCCHHHHHHHHHHHHHhCCC
Confidence 37777777777777776554
No 168
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.93 E-value=2e-09 Score=77.63 Aligned_cols=124 Identities=8% Similarity=0.014 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHH
Q psy5288 42 LYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAK 120 (186)
Q Consensus 42 ~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~ 120 (186)
.+...|..+...|++++|+..|.+++++. |.. ...+..+|.+|... ++++|+.++++++.+.. ++ .
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----P~~-~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~----~ 74 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-----QSR-GDVKLAKADCLLETKQFELAQELLATIPLEYQ---DN----S 74 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-----HTS-HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CH----H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc-HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---Ch----H
Confidence 45667788889999999999999999873 433 45677899999877 99999999999876554 21 1
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 121 HHENIAEIY-EKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 121 ~~~~lg~~y-~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
....++.+. ... +...+|+..|++++.+.++. ...+.++|.++...|++++|+..|++
T Consensus 75 ~~~~~~~~~~~~~-~~~~~a~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 133 (176)
T 2r5s_A 75 YKSLIAKLELHQQ-AAESPELKRLEQELAANPDN------FELACELAVQYNQVGRDEEALELLWN 133 (176)
T ss_dssp HHHHHHHHHHHHH-HTSCHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-cccchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 222334332 222 34456899999999987754 37889999999999999999999976
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.91 E-value=4.3e-09 Score=70.83 Aligned_cols=66 Identities=8% Similarity=0.048 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Q psy5288 39 AIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHT 110 (186)
Q Consensus 39 A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~ 110 (186)
-...+...|.+|...|++++|+.+|.+++++ +|.. ...+..+|.+|... ++++|+.++++++.+..
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNH-QALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444555577899999999999999999998 4444 45677889998876 99999999999987754
No 170
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.91 E-value=3.5e-08 Score=77.27 Aligned_cols=128 Identities=11% Similarity=0.102 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHH
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVA 119 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a 119 (186)
..+...|.++...|++++|..+|.+++++ +|......+...|.++... ++++|+..|++|+++.... .
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~ 168 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------H 168 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC------T
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------H
Confidence 45667788999999999999999999986 3333323788888888776 9999999999998764322 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 120 KHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.++...+.+....+|++++|+..|++++.+++.. ...+.+++.++...|++++|+.+|++
T Consensus 169 ~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455556553322499999999999999998864 37889999999999999999999986
No 171
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.91 E-value=4.9e-08 Score=65.32 Aligned_cols=96 Identities=23% Similarity=0.345 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy5288 43 YVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKH 121 (186)
Q Consensus 43 y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~ 121 (186)
+...+.++...|++++|..++.++..+. +.. ...+..+|.++... ++++|+.++++++.+.... ..+
T Consensus 38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~ 105 (136)
T 2fo7_A 38 WYNLGNAYYKQGDYDEAIEYYQKALELD-----PRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEA 105 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHC-----CCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHH
Confidence 3445778889999999999999998862 222 34567889998877 9999999999998864322 457
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~ 151 (186)
+..+|.++... |++++|+.++++++.+.+
T Consensus 106 ~~~la~~~~~~-~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 106 WYNLGNAYYKQ-GDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHH-ccHHHHHHHHHHHHccCC
Confidence 88899999985 999999999999998754
No 172
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.86 E-value=1.3e-07 Score=87.12 Aligned_cols=138 Identities=12% Similarity=0.058 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q psy5288 33 GNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTD 111 (186)
Q Consensus 33 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~ 111 (186)
.+.+++|..+|.+++..-...+-+-+++..+.+|.+++.+..+ ...|.++|..+... ++.+|+.+|.+|
T Consensus 1062 lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~----p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred CCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence 3678888888887753332233333344445555555555544 46677999999887 999999999887
Q ss_pred cCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-------------CChHHH--------HHHHHHHHHHH
Q psy5288 112 MGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE-------------ENKSSA--------NKCLIKIANYS 170 (186)
Q Consensus 112 ~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~-------------~~~~~~--------~~~~~~la~~y 170 (186)
++ ...+.++|.++.. +|++++|+++|+.|....+.. +..... ...+.++|..+
T Consensus 1132 -dD----~say~eVa~~~~~-lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1132 -DD----PSSYMEVVQAANT-SGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRC 1205 (1630)
T ss_pred -CC----hHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 33 3467889999999 599999999998877544221 111111 12466899999
Q ss_pred HhccCHHHHHHHHHhC
Q psy5288 171 ALTDHLDKAIKLYEQL 186 (186)
Q Consensus 171 ~~~g~~~~A~~~~~~~ 186 (186)
...|+|++|+.+|.++
T Consensus 1206 e~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HhcCCHHHHHHHHHhh
Confidence 9999999999999863
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.86 E-value=5.7e-09 Score=83.43 Aligned_cols=101 Identities=22% Similarity=0.136 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcC------ChhH-----HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5288 79 AGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMG------RFIM-----VAKHHENIAEIYEKELEDQEKAIDHYQHA 146 (186)
Q Consensus 79 aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~------~~~~-----~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA 146 (186)
.+..+.+.|.++... ++++|+.+|++|+.+..... +... ...++.++|.+|.. +|++++|+.+|+++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~-~g~~~~A~~~~~~a 256 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK-LKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 456677888888776 89999999999998753321 1111 11388999999999 59999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 147 ADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 147 ~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
+.+.+.. ..++.++|.+|..+|++++|+..|+++
T Consensus 257 l~~~p~~------~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 257 LTEEEKN------PKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9986643 378899999999999999999999874
No 174
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.83 E-value=2.3e-09 Score=70.53 Aligned_cols=99 Identities=9% Similarity=0.075 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHH
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMV 118 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~ 118 (186)
.+.+...|.++...|++++|+.+|.+++++ +|.. ...+.++|.+|... ++++|+.+|++++++....++....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQN-PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 466788899999999999999999999998 3433 45677999999887 9999999999999998877777777
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQH 145 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~k 145 (186)
..++..+|.++.. +|+++.|+..+++
T Consensus 78 ~~~~~~~~~~~~~-~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 78 SKLQYRLELAQGA-VGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHH-HHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHH-HHhHhhhHhHHHH
Confidence 8899999999998 4888877765543
No 175
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.83 E-value=8.7e-08 Score=80.41 Aligned_cols=128 Identities=12% Similarity=0.141 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHH
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMV 118 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~ 118 (186)
...+...+.++...|++++|..+|.+++++ ++......|...+.++... ++++|...|++|++.... .
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~------~ 389 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART------R 389 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC------C
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC------c
Confidence 345555566777788888888888888875 3333334666777776554 677888888887754211 1
Q ss_pred HHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 119 AKHHENIAEI-YEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 119 a~~~~~lg~~-y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...+...+.+ +.. .|++++|+..|++++..+++. ..+|.+++.++...|++++|..+|++
T Consensus 390 ~~~~~~~a~~~~~~-~~~~~~A~~~~e~al~~~p~~------~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 390 HHVYVTAALMEYYC-SKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp THHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHCCCC------HHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 1223333333 334 377777877787777776643 25677777777777777777777765
No 176
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.83 E-value=1.3e-08 Score=79.21 Aligned_cols=93 Identities=18% Similarity=0.133 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHH
Q psy5288 80 GLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSS 158 (186)
Q Consensus 80 a~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~ 158 (186)
+..+...|.++... ++++|+.+|++++.+.... +.++.++|.+|.. +|++++|+..|++|+.+.+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~----- 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLK-MQQPEQALADCRRALELDGQS----- 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCC-----
Confidence 34566788888766 9999999999999875432 4689999999999 499999999999999986543
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 159 ANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 159 ~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...+.++|.+|..+|++++|+..|++
T Consensus 72 -~~~~~~lg~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 72 -VKAHFFLGQCQLEMESYDEAIANLQR 97 (281)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36889999999999999999999975
No 177
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.80 E-value=3.7e-08 Score=77.04 Aligned_cols=132 Identities=13% Similarity=0.055 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHH
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMV 118 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~ 118 (186)
-++...-+.++...|++++|.+.|..... +.|... ..| ..|.++... ++++|+.+++++... .++...
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~-~~~-~~a~l~~~~~r~~dA~~~l~~a~~~----~d~~~~ 170 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHL-VAW-MKAVVYGAAERWTDVIDQVKSAGKW----PDKFLA 170 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHH-HHH-HHHHHHHHTTCHHHHHHHHTTGGGC----SCHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchH-HHH-HHHHHHHHcCCHHHHHHHHHHhhcc----CCcccH
Confidence 34444446678889999999998877665 245555 444 555566555 999999999865322 133334
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
..++..+|.++.. +|++++|+.+|++++.- ...|........++|.++..+|+.++|...|+++
T Consensus 171 ~~a~~~LG~al~~-LG~~~eAl~~l~~a~~g---~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 171 GAAGVAHGVAAAN-LALFTEAERRLTEANDS---PAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTS---TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHhcC---CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5688999999999 69999999999999842 1114334568899999999999999999999864
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.79 E-value=8.4e-09 Score=67.38 Aligned_cols=100 Identities=12% Similarity=0.033 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHH
Q psy5288 42 LYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAK 120 (186)
Q Consensus 42 ~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~ 120 (186)
.+...|.++...|++++|+.+|.+++++. +.. ...+..+|.+|... ++++|+.++++++++... .....
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~ 77 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-----PEE-SKYWLMKGKALYNLERYEEAVDCYNYVINVIED----EYNKD 77 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-----CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----TTCHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----cCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cchHH
Confidence 35567888999999999999999999873 332 34677899999877 999999999999987543 11245
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhc
Q psy5288 121 HHENIAEIYEKEL-EDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 121 ~~~~lg~~y~~~l-g~~~~Ai~~y~kA~~l~~~ 152 (186)
++..+|.++.. + |++++|+.++++++...+.
T Consensus 78 ~~~~l~~~~~~-~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 78 VWAAKADALRY-IEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHHTT-CSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHhhcccC
Confidence 88999999998 9 9999999999999987654
No 179
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.79 E-value=9.2e-08 Score=60.44 Aligned_cols=86 Identities=22% Similarity=0.320 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q psy5288 76 KHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE 154 (186)
Q Consensus 76 ~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~ 154 (186)
+...+..+..+|.+|... ++++|+.+|++++++.... ..++..+|.++... |++++|+.+|++++.+.+..
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~- 76 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNN- 76 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC-
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCC-
Confidence 344566777888888776 8999999999998774332 45788999999995 99999999999999986543
Q ss_pred ChHHHHHHHHHHHHHHHhcc
Q psy5288 155 NKSSANKCLIKIANYSALTD 174 (186)
Q Consensus 155 ~~~~~~~~~~~la~~y~~~g 174 (186)
...+.++|.++..+|
T Consensus 77 -----~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 77 -----AEAKQNLGNAKQKQG 91 (91)
T ss_dssp -----HHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHhcC
Confidence 367788999887764
No 180
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.78 E-value=6.7e-09 Score=74.40 Aligned_cols=90 Identities=17% Similarity=0.070 Sum_probs=72.1
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-C----------HHHHHHHHHHHHHHHHHcCChhHHH
Q psy5288 51 KLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-N----------PAEAIKAIERAVEIHTDMGRFIMVA 119 (186)
Q Consensus 51 ~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~----------~~~A~~~~~~Al~i~~~~~~~~~~a 119 (186)
.+.+.+++|+.+|.+++++ +|..+ ..+.++|.++... + +++|+.+|++|+++.... +
T Consensus 13 ~r~~~feeA~~~~~~Ai~l-----~P~~a-ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~------~ 80 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS-----NPLDA-DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK------D 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----CTTCH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------H
T ss_pred HHHhHHHHHHHHHHHHHHH-----CCCCH-HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc------H
Confidence 3445688999999999998 45544 5677888888765 2 579999999999987664 4
Q ss_pred HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHhcc
Q psy5288 120 KHHENIAEIYEKELE-----------DQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg-----------~~~~Ai~~y~kA~~l~~~~ 153 (186)
.++.++|.+|.+ +| ++++|+.+|++|+++.++.
T Consensus 81 ~A~~~LG~ay~~-lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 81 EAVWCIGNAYTS-FAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHH-hcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 478999999987 45 8999999999999997764
No 181
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.74 E-value=1.5e-07 Score=65.52 Aligned_cols=87 Identities=10% Similarity=0.031 Sum_probs=73.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhc----C-CHHHHHHHHHHHHHHHHHcCChhHHHH
Q psy5288 46 AGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK----S-NPAEAIKAIERAVEIHTDMGRFIMVAK 120 (186)
Q Consensus 46 ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~----~-~~~~A~~~~~~Al~i~~~~~~~~~~a~ 120 (186)
+|.+|...+..++|+++|.++++. |+ ..++.++|.+|.. . ++++|+.+|++|.+. |+ +.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~----~~ 94 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----ND----QD 94 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TC----HH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CC----HH
Confidence 567788888899999999999985 33 3567799999987 2 899999999999864 55 45
Q ss_pred HHHHHHHHHHH----hcCCHHHHHHHHHHHHHH
Q psy5288 121 HHENIAEIYEK----ELEDQEKAIDHYQHAADC 149 (186)
Q Consensus 121 ~~~~lg~~y~~----~lg~~~~Ai~~y~kA~~l 149 (186)
.+.+||.+|.. . +++++|+.+|++|.+.
T Consensus 95 a~~~Lg~~y~~G~g~~-~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 95 GCLILGYKQYAGKGVV-KNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCC-cCHHHHHHHHHHHHHC
Confidence 78999999998 6 8999999999999986
No 182
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.73 E-value=2.5e-07 Score=76.58 Aligned_cols=117 Identities=10% Similarity=0.137 Sum_probs=57.5
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHcCCh
Q psy5288 44 VRAGNLFKLGK---KWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-----NPAEAIKAIERAVEIHTDMGRF 115 (186)
Q Consensus 44 ~~ag~~~~~~g---~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-----~~~~A~~~~~~Al~i~~~~~~~ 115 (186)
...|.+|...| ++++|++.|.++++. |+. .+..+.++|.+|... ++++|+.+|+++. .|+
T Consensus 180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----g~~--~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~- 247 (452)
T 3e4b_A 180 VELATVYQKKQQPEQQAELLKQMEAGVSR----GTV--TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGY- 247 (452)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHT----TCS--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGS-
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHHC----CCH--HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCC-
Confidence 34455666666 666666666666653 111 122234555555432 5556666666554 122
Q ss_pred hHHHHHHHHHHHH-H--HHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHh
Q psy5288 116 IMVAKHHENIAEI-Y--EKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTD-----HLDKAIKLYEQ 185 (186)
Q Consensus 116 ~~~a~~~~~lg~~-y--~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g-----~~~~A~~~~~~ 185 (186)
+..+.++|.+ | .. .+++++|+.+|++|.+. ++ ...+.+||.+|. .| |+++|+++|++
T Consensus 248 ---~~a~~~Lg~~~~~~~~-~~d~~~A~~~~~~Aa~~----g~----~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 248 ---PASWVSLAQLLYDFPE-LGDVEQMMKYLDNGRAA----DQ----PRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp ---THHHHHHHHHHHHSGG-GCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 2245555555 2 23 25555555555555532 11 234445555554 33 55555555543
No 183
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.72 E-value=3.8e-07 Score=75.55 Aligned_cols=84 Identities=20% Similarity=0.173 Sum_probs=39.0
Q ss_pred HHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHhcc
Q psy5288 83 FVDAANCYKKS-----NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK----ELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 83 ~~~a~~~y~~~-----~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~----~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
+.++|.+|... ++++|+.+|++|+ .|+ +..+.++|.+|.. . .++++|+.+|++|.+.
T Consensus 286 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-----~g~----~~A~~~Lg~~y~~G~g~~-~d~~~A~~~~~~Aa~~---- 351 (452)
T 3e4b_A 286 ELLLGKLYYEGKWVPADAKAAEAHFEKAV-----GRE----VAADYYLGQIYRRGYLGK-VYPQKALDHLLTAARN---- 351 (452)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHTTT-----TTC----HHHHHHHHHHHHTTTTSS-CCHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHh-----CCC----HHHHHHHHHHHHCCCCCC-cCHHHHHHHHHHHHhh----
Confidence 33445555432 4555555555544 222 2344555555543 1 2555555555555542
Q ss_pred CChHHHHHHHHHHHHHHHh----ccCHHHHHHHHH
Q psy5288 154 ENKSSANKCLIKIANYSAL----TDHLDKAIKLYE 184 (186)
Q Consensus 154 ~~~~~~~~~~~~la~~y~~----~g~~~~A~~~~~ 184 (186)
++ .....+||.+|.. ..|+++|+..|+
T Consensus 352 g~----~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 352 GQ----NSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp TC----TTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred Ch----HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 11 1234455555543 235555555554
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.72 E-value=9.3e-09 Score=86.00 Aligned_cols=92 Identities=22% Similarity=0.134 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHH
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSA 159 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~ 159 (186)
..+.++|.++... ++++|+.+|++|+++.... +.++.++|.+|..+ |++++|+.+|++|+.+.+..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~------ 73 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKY------ 73 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTC------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCC------
Confidence 3444556666655 9999999999999985433 66899999999995 99999999999999986543
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 160 NKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 160 ~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++.++|.+|..+|++++|++.|++
T Consensus 74 ~~~~~~lg~~~~~~g~~~eA~~~~~~ 99 (477)
T 1wao_1 74 IKGYYRRAASNMALGKFRAALRDYET 99 (477)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36889999999999999999999986
No 185
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.71 E-value=3.1e-08 Score=70.92 Aligned_cols=79 Identities=14% Similarity=0.113 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHhccCChHHHHHHH
Q psy5288 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQ----------EKAIDHYQHAADCYAGEENKSSANKCL 163 (186)
Q Consensus 94 ~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~----------~~Ai~~y~kA~~l~~~~~~~~~~~~~~ 163 (186)
.+++|+.++++++++.... +..+.++|.++.. ++++ ++||..|++|+.+.++. ...+
T Consensus 17 ~feeA~~~~~~Ai~l~P~~------aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~------~~A~ 83 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLD------ADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKK------DEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHH
T ss_pred HHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCc------HHHH
Confidence 4688999999998877654 4588889999887 4664 69999999999997764 3788
Q ss_pred HHHHHHHHhcc-----------CHHHHHHHHHh
Q psy5288 164 IKIANYSALTD-----------HLDKAIKLYEQ 185 (186)
Q Consensus 164 ~~la~~y~~~g-----------~~~~A~~~~~~ 185 (186)
.++|.+|..+| ++++|+++|++
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~k 116 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQ 116 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHH
Confidence 99999999875 89999999986
No 186
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.70 E-value=2.9e-08 Score=66.27 Aligned_cols=76 Identities=14% Similarity=0.098 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCH
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHL 176 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~ 176 (186)
+|+..|++++++.... +..+..+|.+|... |++++|+.+|++++.+.+.. ..++.++|.+|...|++
T Consensus 3 ~a~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 3 AITERLEAMLAQGTDN------MLLRFTLGKTYAEH-EQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDR 69 (115)
T ss_dssp CHHHHHHHHHTTTCCC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhCCCc------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCH
Confidence 4677777776644322 45788899999884 99999999999999886543 35788899999999999
Q ss_pred HHHHHHHHh
Q psy5288 177 DKAIKLYEQ 185 (186)
Q Consensus 177 ~~A~~~~~~ 185 (186)
++|+..|++
T Consensus 70 ~~A~~~~~~ 78 (115)
T 2kat_A 70 AGARQAWES 78 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 187
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.67 E-value=3e-08 Score=82.00 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHH---------HHHHHhcCCHHHHHHHHHHHHH-------------HHHHcCChhHH--------HH
Q psy5288 32 GGNKTDEAIDLYVRA---------GNLFKLGKKWNDGGNAFLQAGT-------------LHLKNNNKHDA--------GL 81 (186)
Q Consensus 32 ~~~~~~~A~~~y~~a---------g~~~~~~g~~~~A~~~y~~a~~-------------~~~~~~~~~~a--------a~ 81 (186)
..+++++|+++|.++ +..+...|++++|+.++..+.+ ++.++|+...+ ..
T Consensus 44 ~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~ 123 (449)
T 1b89_A 44 QKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNA 123 (449)
T ss_dssp -----------------------------------------------------------------CHHHHTTTTTCC---
T ss_pred HcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHH
Confidence 457889999988887 4456778899999998876664 23344443321 13
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHH
Q psy5288 82 CFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSAN 160 (186)
Q Consensus 82 ~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~ 160 (186)
.+..+|..+... .+++|+.+|.++ ..+.++|.++.. +|++++|++.|.+|...-. .....
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~-Lg~yq~AVea~~KA~~~~~----Wk~v~ 184 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVH-LGEYQAAVDGARKANSTRT----WKEVC 184 (449)
T ss_dssp -------------CTTTHHHHHHHT--------------TCHHHHHHHHHT-TTCHHHHHHHHHHHTCHHH----HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHH-hccHHHHHHHHHHcCCchh----HHHHH
Confidence 566677666654 777888888765 257889999998 6999999999999943310 01111
Q ss_pred HH-----------------------HHHHHHHHHhccCHHHHHHHHHh
Q psy5288 161 KC-----------------------LIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 161 ~~-----------------------~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+ ...+...|.+.|++++|+.++++
T Consensus 185 ~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~ 232 (449)
T 1b89_A 185 FACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEA 232 (449)
T ss_dssp HHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHH
Confidence 12 22345788888999999888875
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.64 E-value=1.9e-07 Score=61.10 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+.++..+|.+|... |++++|+.+|++++++.+... .++.++|.+|..+|++++|++.|++
T Consensus 7 ~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 7 PFTRYALAQEHLKH-DNASRALALFEELVETDPDYV------GTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45788999999995 999999999999999977542 5889999999999999999999976
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.63 E-value=3.1e-07 Score=61.08 Aligned_cols=101 Identities=6% Similarity=0.068 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCH
Q psy5288 58 DGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQ 136 (186)
Q Consensus 58 ~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~ 136 (186)
+|+++|.++++. +|.. ...+..+|.+|... ++++|+.+|++++.+.... ...+..+|.+|... |++
T Consensus 3 ~a~~~~~~al~~-----~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~ 69 (115)
T 2kat_A 3 AITERLEAMLAQ-----GTDN-MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQ-GDR 69 (115)
T ss_dssp CHHHHHHHHHTT-----TCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH-TCH
T ss_pred HHHHHHHHHHHh-----CCCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHc-CCH
Confidence 467777777775 3333 35677999999877 9999999999999875433 44789999999995 999
Q ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccC
Q psy5288 137 EKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDH 175 (186)
Q Consensus 137 ~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~ 175 (186)
++|+.+|++++.+.+..+.. .....+...+..+++
T Consensus 70 ~~A~~~~~~al~~~~~~~~~----~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 70 AGARQAWESGLAAAQSRGDQ----QVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTCH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccH----HHHHHHHHHHHHhcc
Confidence 99999999999998876543 233444455544443
No 190
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.59 E-value=6.3e-07 Score=58.55 Aligned_cols=84 Identities=21% Similarity=0.277 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHH
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSA 159 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~ 159 (186)
..+..+|.+|... ++++|+.+|++++++..... .++..+|.+|.. +|++++|+.+|++++.+.+..++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~~~~--- 77 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYV------GTYYHLGKLYER-LDRTDDAIDTYAQGIEVAREEGTQ--- 77 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhcCCch---
Confidence 4566788888776 88899999998888765432 378889999988 499999999999999988766543
Q ss_pred HHHHHHHHHHHHhccC
Q psy5288 160 NKCLIKIANYSALTDH 175 (186)
Q Consensus 160 ~~~~~~la~~y~~~g~ 175 (186)
.....+..++...+.
T Consensus 78 -~~~~~l~~~l~~~~~ 92 (100)
T 3ma5_A 78 -KDLSELQDAKLKAEG 92 (100)
T ss_dssp -HHHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHccc
Confidence 333455555555443
No 191
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.56 E-value=4.2e-07 Score=57.27 Aligned_cols=63 Identities=24% Similarity=0.312 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...+..+..+|.++... |++++|+.+|++++.+.+.. ..++.++|.+|...|++++|+++|++
T Consensus 6 ~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44567889999999995 99999999999999986543 36889999999999999999999976
No 192
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.51 E-value=1.5e-06 Score=72.82 Aligned_cols=162 Identities=12% Similarity=0.169 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHhhccCCCCc--c---cccc-CCCCHHHHHHHHHHH---------------HHHHHhcCCHHHHHHHHHH
Q psy5288 7 KARQLVAEAEKKISSSSKGF--F---SQFT-GGNKTDEAIDLYVRA---------------GNLFKLGKKWNDGGNAFLQ 65 (186)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~--~---~~~~-~~~~~~~A~~~y~~a---------------g~~~~~~g~~~~A~~~y~~ 65 (186)
+|...+.+|-+.+. | ... + ..++ ..|++++|...|.++ +.++.+.|++++|..+|.+
T Consensus 304 ~A~~~~~~Al~~~~-p-~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLL-K-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTC-S-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-c-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 67777777765222 2 211 1 1111 457999999888887 3345567888888888888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHH-Hh-cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5288 66 AGTLHLKNNNKHDAGLCFVDAANC-YK-KSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHY 143 (186)
Q Consensus 66 a~~~~~~~~~~~~aa~~~~~a~~~-y~-~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y 143 (186)
+++.. +.. ...+...+.+ |. ..++++|...|+++++..... ..++..++.++.. +|+.++|..+|
T Consensus 382 Al~~~-----~~~-~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~------~~~~~~~~~~~~~-~g~~~~Ar~~~ 448 (530)
T 2ooe_A 382 AREDA-----RTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSH-LNEDNNTRVLF 448 (530)
T ss_dssp HHTCT-----TCC-THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHTT-TTCHHHHHHHH
T ss_pred HHhcc-----CCc-hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC------HHHHHHHHHHHHh-CCCHhhHHHHH
Confidence 87641 221 2223233323 33 348999999999999987533 4578899999988 59999999999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 144 QHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 144 ~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
++|+...+. ++......|..........|+.+.+..++.+
T Consensus 449 ~~al~~~~~--~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 449 ERVLTSGSL--PPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHSCCS--CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHhccCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999987442 2222345788888888889999999988865
No 193
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.50 E-value=7e-07 Score=59.07 Aligned_cols=66 Identities=17% Similarity=0.055 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEEN-KSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~-~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+.-+..||..+..+ ++|+.|+.||++|+...+.... ......++.++|.+|.++|++++|+.++++
T Consensus 5 a~dc~~lG~~~~~~-~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~ 71 (104)
T 2v5f_A 5 AEDCFELGKVAYTE-ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71 (104)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44677899999996 9999999999999999865421 123347899999999999999999999876
No 194
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.50 E-value=3.7e-07 Score=75.48 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=52.0
Q ss_pred HhHHHHHHHHHHhhccC--CCCccccccCCCCHHHHHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q psy5288 6 QKARQLVAEAEKKISSS--SKGFFSQFTGGNKTDEAID--------LYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNN 75 (186)
Q Consensus 6 ~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~A~~--------~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~ 75 (186)
++|..+++.+.+.++++ -+.+...+-+-|+++++.+ .+...|..+...|++++|..+|.++
T Consensus 78 EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 78 EELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTTCC----------------CTTTHHHHHHHT---------
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 55666666666654311 0011111112345544433 4566677788888888888887654
Q ss_pred hhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH---------HHHcCChhHHH----------HHHHHHHHHHHHhcCC
Q psy5288 76 KHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEI---------HTDMGRFIMVA----------KHHENIAEIYEKELED 135 (186)
Q Consensus 76 ~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i---------~~~~~~~~~~a----------~~~~~lg~~y~~~lg~ 135 (186)
..|.+++.++..+ ++++|+++|++|..+ +.+.|+++.+- .....+..+|+.. |.
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~-G~ 222 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDR-GY 222 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHT-TC
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHC-CC
Confidence 3455556666555 566666666665322 12223222221 1233456788884 99
Q ss_pred HHHHHHHHHHHHHHH
Q psy5288 136 QEKAIDHYQHAADCY 150 (186)
Q Consensus 136 ~~~Ai~~y~kA~~l~ 150 (186)
+++|+.++++++.+-
T Consensus 223 ~eEai~lLe~aL~le 237 (449)
T 1b89_A 223 FEELITMLEAALGLE 237 (449)
T ss_dssp HHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999998887653
No 195
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.31 E-value=3.3e-06 Score=54.30 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=38.8
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 86 AANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAK-HHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 86 a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~-~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
.|.++... ++++|+..|++++++.... .. .+..+|.+|... |++++|+.+|++++.+.+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVG------KDEAYYLMGNAYRKL-GDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCc
Confidence 34444433 6777777777776653221 23 667777777774 77777777777777776543
No 196
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.29 E-value=1.1e-05 Score=62.90 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=77.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC--hhHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGR--FIMVAKHHE 123 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~--~~~~a~~~~ 123 (186)
|.++...+++++|+.+|.++... .++......+..+|.++..+ ++++|+.+|++++ .+. +........
T Consensus 142 a~l~~~~~r~~dA~~~l~~a~~~----~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~-----~g~~~P~~~~da~~ 212 (282)
T 4f3v_A 142 AVVYGAAERWTDVIDQVKSAGKW----PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAN-----DSPAGEACARAIAW 212 (282)
T ss_dssp HHHHHHTTCHHHHHHHHTTGGGC----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----TSTTTTTTHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHhhcc----CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh-----cCCCCccccHHHHH
Confidence 56888999999999999755432 24444456677999999987 9999999999986 233 433677889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 124 NIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 124 ~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
.+|.++.. +|+.++|+..|++++...+.
T Consensus 213 ~~glaL~~-lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 213 YLAMARRS-QGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHH-HTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhcCCc
Confidence 99999999 59999999999999998664
No 197
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.25 E-value=9.4e-05 Score=52.93 Aligned_cols=104 Identities=9% Similarity=0.009 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCh--
Q psy5288 82 CFVDAANCYKKSNPAEAIKAIERAVEIHTDMGR---FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENK-- 156 (186)
Q Consensus 82 ~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~---~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~-- 156 (186)
.+.++-.++....++.|+-....++.+.....+ +...++++..+|..+..+ ++|-+|...|++|+.+.+.....
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~-~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHD-KEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344455666666899999999998888866554 688899999999999997 99999999999999987743211
Q ss_pred -----------------HHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 157 -----------------SSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 157 -----------------~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
....++..+++.||.++|++++|+.+++.|
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 112367889999999999999999998764
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.20 E-value=5.1e-06 Score=53.37 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHH-HHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 123 ENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANK-CLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 123 ~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~-~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+.|.++... |++++|+..|++++.+.+.. .. ++.++|.+|...|++++|++.|++
T Consensus 4 ~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 4 LKTIKELINQ-GDIENALQALEEFLQTEPVG------KDEAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HHHHHHHHHH-TCHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4678888885 99999999999999986643 25 889999999999999999999986
No 199
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.17 E-value=3e-05 Score=51.00 Aligned_cols=71 Identities=11% Similarity=0.012 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGR-FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~-~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
.++ .+|..+... ++..|+.+|++|++....... ....+.++..+|.+|.. +|+++.|+.++++|+.+.+..
T Consensus 7 dc~-~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 7 DCF-ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred HHH-HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCC
Confidence 444 788877765 999999999999998865532 23456789999999999 599999999999999987654
No 200
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.12 E-value=8.1e-05 Score=60.10 Aligned_cols=137 Identities=7% Similarity=-0.027 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHH
Q psy5288 35 KTDEAIDLYVRAGNLFKL--GKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-----NPAEAIKAIERAVE 107 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~--~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-----~~~~A~~~~~~Al~ 107 (186)
.-.+|.++|.++-..+.. ..++.+|+.+|++|+++ +|..+. ++..++.+|... .....+....+++.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l-----DP~~a~-A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS-----SPEFTY-ARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH-----CTTCHH-HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCCCHH-HHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 346899999998554443 34468999999999998 676432 233344444321 11223333444444
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 108 IHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 108 i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
-......-+..+.++.-++.++... |++++|+.++++|+.+.+ . ...+.-+|.++.-.|++++|++.|++
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~-gd~d~A~~~l~rAl~Ln~-----s--~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVK-GKTDESYQAINTGIDLEM-----S--WLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCC-----C--HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhcCC-----C--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333333344566888888888775 999999999999999942 1 24668889999999999999999975
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.03 E-value=4.8e-05 Score=64.89 Aligned_cols=131 Identities=8% Similarity=-0.005 Sum_probs=98.4
Q ss_pred HHHHHHHHHHH--------------HHHHHhcCC----------HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHh
Q psy5288 36 TDEAIDLYVRA--------------GNLFKLGKK----------WNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYK 91 (186)
Q Consensus 36 ~~~A~~~y~~a--------------g~~~~~~g~----------~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~ 91 (186)
-++|++++.++ +.++...|+ ++++++++.+++.. +|...-. |..=+-+..
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-----~pK~y~a-W~hR~w~l~ 118 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-----NPKSYGT-WHHRCWLLS 118 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-----CCCCHHH-HHHHHHHHH
Confidence 35778888888 445666777 89999999999987 4443333 333344444
Q ss_pred cC---CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy5288 92 KS---NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELE-DQEKAIDHYQHAADCYAGEENKSSANKCLIKIA 167 (186)
Q Consensus 92 ~~---~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg-~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la 167 (186)
.. ++++++.++.+++++...+ ..++..-+.+... +| .+++++++++++++..+.+ ...|.+.+
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N------~~aW~~R~~~l~~-l~~~~~~el~~~~~~I~~~p~n------~saW~~r~ 185 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERN------FHCWDYRRFVAAQ-AAVAPAEELAFTDSLITRNFSN------YSSWHYRS 185 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-TCCCHHHHHHHHHTTTTTTCCC------HHHHHHHH
T ss_pred HcccccHHHHHHHHHHHHhhcccc------ccHHHHHHHHHHH-cCCChHHHHHHHHHHHHHCCCC------ccHHHHHH
Confidence 43 6799999999999987665 3378888888888 58 8999999999999986654 36888888
Q ss_pred HHHHhc--------------cCHHHHHHHHHh
Q psy5288 168 NYSALT--------------DHLDKAIKLYEQ 185 (186)
Q Consensus 168 ~~y~~~--------------g~~~~A~~~~~~ 185 (186)
.++..+ +.+++|++++++
T Consensus 186 ~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ 217 (567)
T 1dce_A 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQN 217 (567)
T ss_dssp HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccccccccHHHHHHHHHHHHH
Confidence 888774 668999988865
No 202
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=97.98 E-value=0.0014 Score=51.82 Aligned_cols=150 Identities=10% Similarity=0.002 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHh-------------------cCC
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYK-------------------KSN 94 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~-------------------~~~ 94 (186)
|+|-+|-..|.-....|.+++++++|++.....+..+-+.|....++..-.-+.++|. ...
T Consensus 27 G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 27 GDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred cChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 4666666666666666666666666666655555555555555544444333344443 321
Q ss_pred --HHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH------------HHHHHhcc--CChH
Q psy5288 95 --PAEAIKAIERAVEIHTDMGR-FIMVAKHHENIAEIYEKELEDQEKAIDHYQH------------AADCYAGE--ENKS 157 (186)
Q Consensus 95 --~~~A~~~~~~Al~i~~~~~~-~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~k------------A~~l~~~~--~~~~ 157 (186)
...=..+..+++.-..+.|. ..+-...+..+|..|... +++.+|..+|-- ..+++... +.+.
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e-~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEG-DFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 11124566677777766643 455567899999999997 999999988731 12223222 4555
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy5288 158 SANKCLIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 158 ~~~~~~~~la~~y~~~g~~~~A~~~~~ 184 (186)
...-...+....|..+|+...|...|+
T Consensus 186 e~dlf~~RaVL~yL~l~n~~~A~~~~~ 212 (312)
T 2wpv_A 186 TVAEFFSRLVFNYLFISNISFAHESKD 212 (312)
T ss_dssp HHHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 544444555556788999999988875
No 203
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.91 E-value=0.00021 Score=56.45 Aligned_cols=129 Identities=9% Similarity=-0.035 Sum_probs=87.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy5288 44 VRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHH 122 (186)
Q Consensus 44 ~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~ 122 (186)
.-+|.++...|++++|++.+.+.+.. +.......++..++.++... +++.|.+.+++..++..+.-+.+.. +.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~--~l 177 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE--MI 177 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH--HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH--HH
Confidence 47789999999999999999887543 11135677788889999887 9999999998865543210001122 33
Q ss_pred HHHHHH--HHHh-cCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 123 ENIAEI--YEKE-LEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 123 ~~lg~~--y~~~-lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..++.. .... .+++++|+..|+++.+-++.. .....+.+ ++..+|++++|.+.++.
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~----~~~~lLln---~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTW----KTQLGLLN---LHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH----HHHHHHHH---HHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc----ccHHHHHH---HHHHcCCHHHHHHHHHH
Confidence 444433 3332 148999999999987765430 11233344 89999999999998864
No 204
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.88 E-value=0.00072 Score=53.28 Aligned_cols=130 Identities=9% Similarity=0.037 Sum_probs=90.4
Q ss_pred HHHHHHHHHH--------------HHHHHhcC--CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH----hc----
Q psy5288 37 DEAIDLYVRA--------------GNLFKLGK--KWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCY----KK---- 92 (186)
Q Consensus 37 ~~A~~~y~~a--------------g~~~~~~g--~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y----~~---- 92 (186)
++|+.++.++ +.+...+| +++++++++.+++.+ +|..... +..=+.+. ..
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~-----nPk~y~a-W~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD-----NEKNYQI-WNYRQLIIGQIMELNNND 123 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-----CTTCCHH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-----CcccHHH-HHHHHHHHHHHHHhcccc
Confidence 5788888887 44566777 899999999998886 3332211 11112222 11
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Q psy5288 93 SNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQE--KAIDHYQHAADCYAGEENKSSANKCLIKIANYS 170 (186)
Q Consensus 93 ~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~--~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y 170 (186)
.++++++.++.+++++..++ ..++..-+.+... +|.++ +++++++++++..+.+ ..+|.+.+.++
T Consensus 124 ~~~~~EL~~~~~~l~~~pkn------y~aW~~R~~vl~~-l~~~~~~~EL~~~~~~i~~d~~N------~sAW~~R~~ll 190 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKN------HHVWSYRKWLVDT-FDLHNDAKELSFVDKVIDTDLKN------NSAWSHRFFLL 190 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-TTCTTCHHHHHHHHHHHHHCTTC------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-hcccChHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Confidence 36788888888888766544 3367777778777 58888 8888888888876654 26777778888
Q ss_pred HhccC------HHHHHHHHHh
Q psy5288 171 ALTDH------LDKAIKLYEQ 185 (186)
Q Consensus 171 ~~~g~------~~~A~~~~~~ 185 (186)
..+|+ ++++++++++
T Consensus 191 ~~l~~~~~~~~~~eEl~~~~~ 211 (306)
T 3dra_A 191 FSKKHLATDNTIDEELNYVKD 211 (306)
T ss_dssp HSSGGGCCHHHHHHHHHHHHH
T ss_pred HhccccchhhhHHHHHHHHHH
Confidence 87777 8888887754
No 205
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.81 E-value=0.0091 Score=48.62 Aligned_cols=147 Identities=9% Similarity=-0.060 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCC
Q psy5288 37 DEAIDLYVRAGNLFKL-GKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGR 114 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~-~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~ 114 (186)
.++++.-....+.|.. -+..+.-++....+++..+.-+...--...-.++|.+|... ++.+|+..+.+..+-.+..++
T Consensus 55 ak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd 134 (394)
T 3txn_A 55 AKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDD 134 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc
Confidence 4555555555555543 34566667777777777665544443334445888888876 999999999999998888888
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHH-hccCHHHHHHHHH
Q psy5288 115 FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE-ENKSSANKCLIKIANYSA-LTDHLDKAIKLYE 184 (186)
Q Consensus 115 ~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~-~~~~~~~~~~~~la~~y~-~~g~~~~A~~~~~ 184 (186)
....-.++..-..+|.. ++++.++..+|.+|..+.... .+|...+....--|..+. ..++|..|..+|-
T Consensus 135 ~~~llev~lle~~~~~~-~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ 205 (394)
T 3txn_A 135 KNLLVEVQLLESKTYHA-LSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFY 205 (394)
T ss_dssp THHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHH
Confidence 88888899999999999 599999999999999987654 567777777788888899 8999999999884
No 206
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.79 E-value=0.00074 Score=53.32 Aligned_cols=135 Identities=10% Similarity=0.035 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHH----------------HHHHHhcCCHHHHHHHHHHHHHHHHHcCCh-----hHHHHHHHHHHHH---
Q psy5288 34 NKTDEAIDLYVRA----------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNK-----HDAGLCFVDAANC--- 89 (186)
Q Consensus 34 ~~~~~A~~~y~~a----------------g~~~~~~g~~~~A~~~y~~a~~~~~~~~~~-----~~aa~~~~~a~~~--- 89 (186)
|++++|+.++.+. ..++..+|+++.|...+.+..++ ++ +.... ..++..
T Consensus 114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-----~~d~~~~~d~~l--~~Laea~v~ 186 (310)
T 3mv2_B 114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-----IEDTVSGDNEMI--LNLAESYIK 186 (310)
T ss_dssp TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SCHHHHHHHHHH--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CccccccchHHH--HHHHHHHHH
Confidence 6777777777766 34688899999999988887666 34 12222 233333
Q ss_pred -HhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCh----HHHHHHH
Q psy5288 90 -YKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENK----SSANKCL 163 (186)
Q Consensus 90 -y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~----~~~~~~~ 163 (186)
.... ++.+|...|++..+-+ ++ ......+.+ ++.. +|++++|...+++....+++.+.. +.-..++
T Consensus 187 l~~g~~~~q~A~~~f~El~~~~---p~-~~~~~lLln---~~~~-~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L 258 (310)
T 3mv2_B 187 FATNKETATSNFYYYEELSQTF---PT-WKTQLGLLN---LHLQ-QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL 258 (310)
T ss_dssp HHHTCSTTTHHHHHHHHHHTTS---CS-HHHHHHHHH---HHHH-HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHhC---CC-cccHHHHHH---HHHH-cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence 2222 7889999998854322 22 122333444 7787 499999999999888887542110 1124788
Q ss_pred HHHHHHHHhccCHHHHHHHHHh
Q psy5288 164 IKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 164 ~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.|+..+...+|+ +|.+++++
T Consensus 259 aN~i~l~~~lgk--~a~~l~~q 278 (310)
T 3mv2_B 259 ANQITLALMQGL--DTEDLTNQ 278 (310)
T ss_dssp HHHHHHHHHTTC--TTHHHHHH
T ss_pred HHHHHHHHHhCh--HHHHHHHH
Confidence 888888888887 77777765
No 207
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.78 E-value=0.0036 Score=50.96 Aligned_cols=111 Identities=13% Similarity=-0.011 Sum_probs=97.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-CChhHHHHHH
Q psy5288 45 RAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM-GRFIMVAKHH 122 (186)
Q Consensus 45 ~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~-~~~~~~a~~~ 122 (186)
+.|.+|...|+|.+|..++.+..+-.+++++.......+..-.++|... ++.++...|.+|..+.... .++...+.+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4477899999999999999999999988888888888888888888877 9999999999999998776 7788899999
Q ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHHHHhccCCh
Q psy5288 123 ENIAEIYE-KELEDQEKAIDHYQHAADCYAGEENK 156 (186)
Q Consensus 123 ~~lg~~y~-~~lg~~~~Ai~~y~kA~~l~~~~~~~ 156 (186)
.--|.++. .. ++|..|..+|-+|..-|...+.+
T Consensus 184 ~~~Gi~~l~~~-rdyk~A~~~F~eaf~~f~~~~~~ 217 (394)
T 3txn_A 184 LQSGILHAADE-RDFKTAFSYFYEAFEGFDSVDSV 217 (394)
T ss_dssp HHHHHHHHHTT-SCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHhhHHHHHhc-cCHHHHHHHHHHHHhcccccccH
Confidence 99999999 76 99999999999999888766544
No 208
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.72 E-value=0.0011 Score=52.20 Aligned_cols=131 Identities=9% Similarity=-0.057 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhc-C--CHHHHHHHHHHHHHHH
Q psy5288 33 GNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK-S--NPAEAIKAIERAVEIH 109 (186)
Q Consensus 33 ~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~-~--~~~~A~~~~~~Al~i~ 109 (186)
+.+|.++...+... .......++|+.++.+++.+ +|.....-. .=+.+... . ++++++.++.+++.+.
T Consensus 29 ~~~y~~~~~~~~a~---~~~~e~s~~aL~~t~~~L~~-----nP~~~taWn-~R~~~L~~l~~~~~~eeL~~~~~~L~~n 99 (306)
T 3dra_A 29 DEDYKQIMGLLLAL---MKAEEYSERALHITELGINE-----LASHYTIWI-YRFNILKNLPNRNLYDELDWCEEIALDN 99 (306)
T ss_dssp CHHHHHHHHHHHHH---HHTTCCSHHHHHHHHHHHHH-----CTTCHHHHH-HHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHH-----CcHHHHHHH-HHHHHHHHcccccHHHHHHHHHHHHHHC
Confidence 45666666666553 44455567999999999998 566544333 33444433 3 7999999999999877
Q ss_pred HHcCChhHHHHHHHHHHHHH----HHhc---CCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHH--HHH
Q psy5288 110 TDMGRFIMVAKHHENIAEIY----EKEL---EDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLD--KAI 180 (186)
Q Consensus 110 ~~~~~~~~~a~~~~~lg~~y----~~~l---g~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~--~A~ 180 (186)
.+.-. ++..-+.++ .. + +++++++.+++++++..+++ ..+|.+.+-++..+|.++ +++
T Consensus 100 Pk~y~------aW~~R~~iL~~~~~~-l~~~~~~~~EL~~~~~~l~~~pkn------y~aW~~R~~vl~~l~~~~~~~EL 166 (306)
T 3dra_A 100 EKNYQ------IWNYRQLIIGQIMEL-NNNDFDPYREFDILEAMLSSDPKN------HHVWSYRKWLVDTFDLHNDAKEL 166 (306)
T ss_dssp TTCCH------HHHHHHHHHHHHHHH-TTTCCCTHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCTTCHHHH
T ss_pred cccHH------HHHHHHHHHHHHHHh-ccccCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcccChHHHH
Confidence 66643 555556666 44 4 78999999999999998765 378999999999999998 999
Q ss_pred HHHHh
Q psy5288 181 KLYEQ 185 (186)
Q Consensus 181 ~~~~~ 185 (186)
+++++
T Consensus 167 ~~~~~ 171 (306)
T 3dra_A 167 SFVDK 171 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.66 E-value=0.0015 Score=55.64 Aligned_cols=128 Identities=9% Similarity=0.018 Sum_probs=93.9
Q ss_pred HHHHHHHHHHH---HhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-C----------HHHHHHHHHH
Q psy5288 40 IDLYVRAGNLF---KLGK-KWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-N----------PAEAIKAIER 104 (186)
Q Consensus 40 ~~~y~~ag~~~---~~~g-~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~----------~~~A~~~~~~ 104 (186)
+..|..+-..+ ...| ..++|++++.+++.+ +|.... +|..=+.+.... + +++++.++.+
T Consensus 25 ~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~-----nP~~~t-aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~ 98 (567)
T 1dce_A 25 LKLYQSATQAVFQKRQAGELDESVLELTSQILGA-----NPDFAT-LWNCRREVLQHLETEKSPEESAALVKAELGFLES 98 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH-----CTTCHH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----CchhHH-HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHH
Confidence 44455543322 2334 456779999999998 555433 333334444443 3 8999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcc-CHHHHHH
Q psy5288 105 AVEIHTDMGRFIMVAKHHENIAEIYEKELE--DQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTD-HLDKAIK 181 (186)
Q Consensus 105 Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg--~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g-~~~~A~~ 181 (186)
++++..+. ..++..-+.++.. ++ +++++++++++++++.+++ ..+|.+.+.++...| .++++++
T Consensus 99 ~l~~~pK~------y~aW~hR~w~l~~-l~~~~~~~el~~~~k~l~~d~~N------~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 99 CLRVNPKS------YGTWHHRCWLLSR-LPEPNWARELELCARFLEADERN------FHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHCTTC------HHHHHHHHHHHHT-CSSCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHhCCCC------HHHHHHHHHHHHH-cccccHHHHHHHHHHHHhhcccc------ccHHHHHHHHHHHcCCChHHHHH
Confidence 98766554 3478888999888 69 7799999999999997765 378999999999999 9999999
Q ss_pred HHHhC
Q psy5288 182 LYEQL 186 (186)
Q Consensus 182 ~~~~~ 186 (186)
++++.
T Consensus 166 ~~~~~ 170 (567)
T 1dce_A 166 FTDSL 170 (567)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 98763
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.65 E-value=0.00022 Score=46.05 Aligned_cols=61 Identities=16% Similarity=0.054 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 119 AKHHENIAEIYEKELED---QEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~---~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
+..+..+|.++... ++ .++|..++++|+.+.+++ ...+..+|.++...|+|++|+.+++++
T Consensus 6 ~~~~~~~a~al~~~-~~~~~~~~A~~~l~~AL~~dp~~------~rA~~~lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 6 ATQLAAKATTLYYL-HKQAMTDEVSLLLEQALQLEPYN------EAALSLIANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp HHHHHHHHHHHHHT-TTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677788887643 44 799999999999997764 368889999999999999999999864
No 211
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=97.58 E-value=0.011 Score=46.97 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH-------------------HHHHHHhcCCH--
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFV-------------------DAANCYKKSNP-- 95 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~-------------------~a~~~y~~~~~-- 95 (186)
-+|-..|.-....|...++|++|++.....+..+-+.|....++..-. ++.+++....+
T Consensus 32 YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~ 111 (336)
T 3lpz_A 32 YEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGE 111 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTC
T ss_pred cHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCC
Confidence 555555555555555555555555555555555555554444443333 44444443311
Q ss_pred HHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHH------------HHHHHHhccCChHHHHHH
Q psy5288 96 AEAIKAIERAVEIHTDMG-RFIMVAKHHENIAEIYEKELEDQEKAIDHYQ------------HAADCYAGEENKSSANKC 162 (186)
Q Consensus 96 ~~A~~~~~~Al~i~~~~~-~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~------------kA~~l~~~~~~~~~~~~~ 162 (186)
..=..+..+|+.-..+.| ...+-...+..+|.+|... +++.+|..+|- -..+++... .+....-.
T Consensus 112 p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e-~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~-~~~e~dlf 189 (336)
T 3lpz_A 112 PVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEE-GEFEAAEKHLVLGTKESPEVLARMEYEWYKQD-ESHTAPLY 189 (336)
T ss_dssp HHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHT-TCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS-CGGGHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc-CCccHHHH
Confidence 122446666666666544 2444456888899999986 99999988862 112222322 34444445
Q ss_pred HHHHHHHHHhccCHHHHHHHHH
Q psy5288 163 LIKIANYSALTDHLDKAIKLYE 184 (186)
Q Consensus 163 ~~~la~~y~~~g~~~~A~~~~~ 184 (186)
..+....|..+++...|-..|+
T Consensus 190 iaRaVL~yL~l~n~~~A~~~~~ 211 (336)
T 3lpz_A 190 CARAVLPYLLVANVRAANTAYR 211 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 5666667888999999988654
No 212
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.49 E-value=0.0087 Score=42.71 Aligned_cols=95 Identities=14% Similarity=0.036 Sum_probs=72.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChh---------
Q psy5288 50 FKLGKKWNDGGNAFLQAGTLHLKNN---NKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFI--------- 116 (186)
Q Consensus 50 ~~~~g~~~~A~~~y~~a~~~~~~~~---~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~--------- 116 (186)
....|.|+.|+-....++.+..... .+......+.-.|+.+... +|..|...|++|+.+.+...+..
T Consensus 30 L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ 109 (167)
T 3ffl_A 30 MAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNS 109 (167)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------
T ss_pred HHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 3456789999999988888876544 3666777787888887765 99999999999999987553222
Q ss_pred ----------HHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5288 117 ----------MVAKHHENIAEIYEKELEDQEKAIDHYQH 145 (186)
Q Consensus 117 ----------~~a~~~~~lg~~y~~~lg~~~~Ai~~y~k 145 (186)
.-..+-.+++.||.. ++++++||..++.
T Consensus 110 ss~p~s~~~~~e~Elkykia~C~~~-l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 110 ASTPQSQCLPSEIEVKYKLAECYTV-LKQDKDAIAILDG 147 (167)
T ss_dssp -------CCCCHHHHHHHHHHHHHH-TTCHHHHHHHHHT
T ss_pred CCCcccccccchHHHHHHHHHHHHH-HCCHHHHHHHHhc
Confidence 123678999999999 6999999988654
No 213
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.41 E-value=0.0034 Score=49.96 Aligned_cols=134 Identities=7% Similarity=-0.045 Sum_probs=94.3
Q ss_pred CCCHH-HHHHHHHHHH--------------HHHHhcCC----------HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q psy5288 33 GNKTD-EAIDLYVRAG--------------NLFKLGKK----------WNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAA 87 (186)
Q Consensus 33 ~~~~~-~A~~~y~~ag--------------~~~~~~g~----------~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~ 87 (186)
+++++ +|+.++..+. .+....+. +++++.++..++.. +|..- .++..=+
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-----~PKny-~aW~hR~ 115 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-----NPKSY-GTWHHRC 115 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCH-HHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-----CCCCH-HHHHHHH
Confidence 34555 7888888883 34444443 56777887777775 33332 2233333
Q ss_pred HHHhcC---CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhccCChHHHHHHH
Q psy5288 88 NCYKKS---NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELED-QEKAIDHYQHAADCYAGEENKSSANKCL 163 (186)
Q Consensus 88 ~~y~~~---~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~-~~~Ai~~y~kA~~l~~~~~~~~~~~~~~ 163 (186)
-+.... .+++++.++.+++++...+.. ++..-+.+... +|. ++++++++.++++..+.+ ..+|
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~------AW~~R~~vl~~-l~~~~~eel~~~~~~I~~~p~N------~SAW 182 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFH------CWDYRRFVAAQ-AAVAPAEELAFTDSLITRNFSN------YSSW 182 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCSCC------HHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH-hCcCHHHHHHHHHHHHHHCCCC------HHHH
Confidence 444443 489999999999987765533 67778888887 588 699999999999987654 3678
Q ss_pred HHHHHHHHhc--------------cCHHHHHHHHHh
Q psy5288 164 IKIANYSALT--------------DHLDKAIKLYEQ 185 (186)
Q Consensus 164 ~~la~~y~~~--------------g~~~~A~~~~~~ 185 (186)
.+.+.++..+ +.++++++++.+
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ 218 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN 218 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHH
Confidence 8888888776 568889988864
No 214
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.37 E-value=0.0039 Score=54.28 Aligned_cols=128 Identities=12% Similarity=0.101 Sum_probs=86.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHc------CChh----------HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHLKN------NNKH----------DAGLCFVDAANCYKKS-NPAEAIKAIERAVEIH 109 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~~~------~~~~----------~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~ 109 (186)
+.+....|+++.|...|.++++..... ..|. .....|...+.+-... +.+.|...|.+|+...
T Consensus 385 a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~ 464 (679)
T 4e6h_A 385 SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK 464 (679)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 445667889999999999998864210 0011 2233455555555444 7888999999887652
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 110 TDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 110 ~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
... ...++...+.+.....++++.|...|++++..++.. ...+...+......|+.++|..+|++
T Consensus 465 ~~~-----~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~------~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 465 KLV-----TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD------GEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp GGS-----CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCC-----ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc------hHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 111 123556666665542245899999999999998764 24566777788888999999999986
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.37 E-value=0.0041 Score=48.58 Aligned_cols=83 Identities=13% Similarity=0.168 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Q psy5288 95 PAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKE----LEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYS 170 (186)
Q Consensus 95 ~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~----lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y 170 (186)
..+|...+++|+++-..- .-+.++.-+|.+|... .|+.++|..+|++|+.+.++.+ ..++...|..+
T Consensus 179 l~~A~a~lerAleLDP~~----~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-----id~~v~YA~~l 249 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSY----QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-----PDHHITYADAL 249 (301)
T ss_dssp HHHHHHHHHHHHHHCTTH----HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-----SHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCc----ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-----chHHHHHHHHH
Confidence 578888899998876542 2345888999999871 2999999999999999987432 25777889999
Q ss_pred Hhc-cCHHHHHHHHHhC
Q psy5288 171 ALT-DHLDKAIKLYEQL 186 (186)
Q Consensus 171 ~~~-g~~~~A~~~~~~~ 186 (186)
... |+++.|..+++++
T Consensus 250 ~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 250 CIPLNNRAGFDEALDRA 266 (301)
T ss_dssp TTTTTCHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 885 9999999999863
No 216
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.35 E-value=0.0048 Score=49.12 Aligned_cols=131 Identities=8% Similarity=0.019 Sum_probs=88.8
Q ss_pred HHHHHHHHHHH--------------HHHHHhcC--CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-C-HHH
Q psy5288 36 TDEAIDLYVRA--------------GNLFKLGK--KWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-N-PAE 97 (186)
Q Consensus 36 ~~~A~~~y~~a--------------g~~~~~~g--~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~-~~~ 97 (186)
+++++.++..+ +.+....+ .+++++.++.+++++. +..- .++..-+-+.... . +++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-----prNy-~AW~~R~~vl~~l~~~~~e 163 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-----ERNF-HCWDYRRFVAAQAAVAPAE 163 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-----TTCH-HHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHHhCcCHHH
Confidence 56666776666 34566777 4899999999999973 3322 2333334444444 4 689
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHHHhccCChHHHHHHH
Q psy5288 98 AIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKEL--------------EDQEKAIDHYQHAADCYAGEENKSSANKCL 163 (186)
Q Consensus 98 A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~l--------------g~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~ 163 (186)
+++++.+++++...+.+ ++...+.++.. + +.++++++++.+++.+.+++. .+|
T Consensus 164 el~~~~~~I~~~p~N~S------AW~~R~~ll~~-l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~------SaW 230 (331)
T 3dss_A 164 ELAFTDSLITRNFSNYS------SWHYRSCLLPQ-LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ------SAW 230 (331)
T ss_dssp HHHHHHHHHHHCSCCHH------HHHHHHHHHHH-HSCCC------CCCHHHHHHHHHHHHHHHHHSTTCH------HHH
T ss_pred HHHHHHHHHHHCCCCHH------HHHHHHHHHHH-hhhccccccccccchHHHHHHHHHHHHHHHhCCCCH------HHH
Confidence 99999999986654433 66667777665 4 458999999999999987652 455
Q ss_pred HHHHHHHHhc-----------cCHHHHHHHHHh
Q psy5288 164 IKIANYSALT-----------DHLDKAIKLYEQ 185 (186)
Q Consensus 164 ~~la~~y~~~-----------g~~~~A~~~~~~ 185 (186)
..+.-++... +.++++++++++
T Consensus 231 ~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e 263 (331)
T 3dss_A 231 FYHRWLLGAGSGRCELSVEKSTVLQSELESCKE 263 (331)
T ss_dssp HHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence 5444444443 457888888765
No 217
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.22 E-value=0.002 Score=51.65 Aligned_cols=130 Identities=9% Similarity=0.019 Sum_probs=87.1
Q ss_pred HHHHHHHHHH--------------HHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhc--C-CHHHH
Q psy5288 37 DEAIDLYVRA--------------GNLFKLGK-KWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK--S-NPAEA 98 (186)
Q Consensus 37 ~~A~~~y~~a--------------g~~~~~~g-~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~--~-~~~~A 98 (186)
++|++++.++ +.+....| .+++++.++.+++.. +|..- .++..=+.+... . +++++
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-----nPKny-~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-----NLKSY-QVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----TCCCH-HHHHHHHHHHHHHCCSCCHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----CCCcH-HHHHHHHHHHHHhcCCChHHH
Confidence 5677776666 33455666 477888887777765 23222 222222333332 2 66788
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Q psy5288 99 IKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQE--------KAIDHYQHAADCYAGEENKSSANKCLIKIANYS 170 (186)
Q Consensus 99 ~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~--------~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y 170 (186)
+.++.+++++...+ ..++..-+.+... +|.++ +++++++++++..+.+ ..+|.+.+.++
T Consensus 145 L~~~~k~L~~dpkN------y~AW~~R~wvl~~-l~~~~~~~~~~~~eELe~~~k~I~~dp~N------~SAW~~R~~lL 211 (349)
T 3q7a_A 145 IEYIHGSLLPDPKN------YHTWAYLHWLYSH-FSTLGRISEAQWGSELDWCNEMLRVDGRN------NSAWGWRWYLR 211 (349)
T ss_dssp HHHHHHHTSSCTTC------HHHHHHHHHHHHH-HHHTTCCCHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC------HHHHHHHHHHHHH-hccccccchhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Confidence 88888877654443 2356666777666 47776 9999999999987654 37889999999
Q ss_pred HhccC-------HHHHHHHHHh
Q psy5288 171 ALTDH-------LDKAIKLYEQ 185 (186)
Q Consensus 171 ~~~g~-------~~~A~~~~~~ 185 (186)
..+++ ++++++++++
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~ 233 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILK 233 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHH
T ss_pred HhccccccchHHHHHHHHHHHH
Confidence 99887 7899988764
No 218
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=97.20 E-value=0.035 Score=44.11 Aligned_cols=144 Identities=10% Similarity=-0.024 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKW---NDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIH 109 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~---~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~ 109 (186)
++.++.+.-+..- -..|+| =+|-+.|.-...=|.+.+++..+...+..-+..+.+. +...|.+...--++++
T Consensus 10 ~~~~~~i~rl~~~----I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy 85 (336)
T 3lpz_A 10 NKIERIIARLQRR----IAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTF 85 (336)
T ss_dssp CHHHHHHHHHHHH----HHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH----HhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHH
Confidence 3444444444432 235777 5666666665555667788888888888877777766 8888888888888888
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 110 TDMGRFIMVAKHHENIAEIYEKELEDQEK-AIDHYQHAADCYAGEE-NKSSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 110 ~~~~~~~~~a~~~~~lg~~y~~~lg~~~~-Ai~~y~kA~~l~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
.+.+..... ....++..++.. +..-+. =..+..+|+.+..+.+ .+..-.....-+|.+|.+.++|.+|..+|
T Consensus 86 ~~~~~~~~~-~~~~rL~~L~~~-~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 86 RQAGQRVDG-ASRGKLLGCLRL-FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTCCCCH-HHHHHHHHHHTT-SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHcCCCCCH-HHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 887654332 466777777765 343221 2345677777766532 23333467788999999999999998876
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.15 E-value=0.042 Score=47.66 Aligned_cols=98 Identities=15% Similarity=0.017 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHH------HHHHHHcCChhHHHHH---H------HHHHHHHHHhcCCHHHHHHHH-
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERA------VEIHTDMGRFIMVAKH---H------ENIAEIYEKELEDQEKAIDHY- 143 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~A------l~i~~~~~~~~~~a~~---~------~~lg~~y~~~lg~~~~Ai~~y- 143 (186)
..+.++|+.+.+. +++.|.++|.++ ..++...++....... . .....+|.. +|++++|++.|
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~-~g~~~~a~~~~~ 760 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWI-AGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHH-cCCHHHHHHHHH
Confidence 5677888888776 888998888775 3344445554432221 1 112223444 47777777775
Q ss_pred -----HHHHHHHhccCChH-HHHHHHHHHHHHHHhccCHHHH
Q psy5288 144 -----QHAADCYAGEENKS-SANKCLIKIANYSALTDHLDKA 179 (186)
Q Consensus 144 -----~kA~~l~~~~~~~~-~~~~~~~~la~~y~~~g~~~~A 179 (186)
.+|+.+.+..+... ....+....+.-+...|+++.|
T Consensus 761 ~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 761 KSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 45556555444322 1345666677777777875433
No 220
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=97.14 E-value=0.014 Score=45.93 Aligned_cols=129 Identities=9% Similarity=0.013 Sum_probs=93.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q psy5288 53 GKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK 131 (186)
Q Consensus 53 ~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~ 131 (186)
.|+|=+|-+.|.-...=+.+.++...+...+..-+..+.+. +...|.+...--++++.+.+.... .....++..++..
T Consensus 26 ~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~-~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 26 AGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD-DISVARLVRLIAE 104 (312)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS-HHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH
Confidence 46666888887777776777788888888888877777665 888888888888888888876543 3366677777765
Q ss_pred hcCCHH-HHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 132 ELEDQE-KAIDHYQHAADCYAGEEN-KSSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 132 ~lg~~~-~Ai~~y~kA~~l~~~~~~-~~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
+..-+ .=..+..+|+.+..+.+. +..-...+.-+|..|.+.|++.+|..+|
T Consensus 105 -~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 105 -LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp -CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 23222 124666778887665432 3333467889999999999999999887
No 221
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.064 Score=44.24 Aligned_cols=118 Identities=5% Similarity=-0.052 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH-HHHHcCChh
Q psy5288 39 AIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVE-IHTDMGRFI 116 (186)
Q Consensus 39 A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~-i~~~~~~~~ 116 (186)
-+.+-...+.+|...|++.+|++.......=.....+...-...+.....+|... ++.+|...+.++.. .+.....+.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 3455667788999999999999988776543333445556677777777777665 99999999999875 444556677
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChH
Q psy5288 117 MVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKS 157 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~ 157 (186)
..+.++.-.|.++... ++|.+|..+|.++.+.+...+++.
T Consensus 216 lk~~~~~~~~~~~~~e-~~y~~a~~~y~e~~~~~~~~~d~~ 255 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHK-REYLEVAQYLQEIYQTDAIKSDEA 255 (445)
T ss_dssp HHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcccccCCHH
Confidence 8889999999999987 999999999999998876655543
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.10 E-value=0.0079 Score=42.39 Aligned_cols=62 Identities=15% Similarity=0.042 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 119 AKHHENIAEIYEKELE---DQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg---~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..+.+++|.++... . +.+++|..+++.++.. .|....+|+.++|..|.++|+|++|.+++++
T Consensus 32 ~~~~F~ya~~Lv~S-~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 32 KSTQFEYAWCLVRS-KYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45778888888773 6 5668999999888853 2223457889999999999999999998875
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.04 E-value=0.013 Score=47.30 Aligned_cols=129 Identities=13% Similarity=0.047 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHH--------------H----HhcCCHHHHHHHHHHHHH
Q psy5288 7 KARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNL--------------F----KLGKKWNDGGNAFLQAGT 68 (186)
Q Consensus 7 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~--------------~----~~~g~~~~A~~~y~~a~~ 68 (186)
+|-+++-+|...+. .+ -..+..+|+++|+++..+ | ...+...........+..
T Consensus 195 ~Aydl~Lra~~~l~---~~------~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 195 ALLTNFYQAHDYLL---HG------DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp GGHHHHHHHHHHHH---HC------SHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cC------CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 45566666666665 11 224678999999998432 1 011111112222222222
Q ss_pred HHHHcCChhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5288 69 LHLKNNNKHDAGLCFVDAANCYK-KSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAA 147 (186)
Q Consensus 69 ~~~~~~~~~~aa~~~~~a~~~y~-~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~ 147 (186)
....+......+.++.-++.++. ..++++|+..+++|+.+. .+ +..+..+|.++.-. |++++|++.|++|+
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s----~~a~~llG~~~~~~-G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MS----WLNYVLLGKVYEMK-GMNREAADAYLTAF 337 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CC----HHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CC----HHHHHHHHHHHHHC-CCHHHHHHHHHHHH
Confidence 21122112223344544554443 359999999999999984 22 34668899999985 99999999999999
Q ss_pred HHHhc
Q psy5288 148 DCYAG 152 (186)
Q Consensus 148 ~l~~~ 152 (186)
.+.+.
T Consensus 338 rL~P~ 342 (372)
T 3ly7_A 338 NLRPG 342 (372)
T ss_dssp HHSCS
T ss_pred hcCCC
Confidence 99664
No 224
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.94 E-value=0.006 Score=48.91 Aligned_cols=132 Identities=5% Similarity=-0.022 Sum_probs=97.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Q psy5288 32 GGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS--NPAEAIKAIERAVEIH 109 (186)
Q Consensus 32 ~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~--~~~~A~~~~~~Al~i~ 109 (186)
=+++|.++...+.. +....+..++|++++.+++.+ +|.... ++..=+.+...+ .+++++.++.+++.+.
T Consensus 49 y~~~y~~~~~~~r~---~~~~~e~se~AL~lt~~~L~~-----nP~~yt-aWn~R~~iL~~l~~~l~eEL~~~~~~L~~n 119 (349)
T 3q7a_A 49 YSEEYKDAMDYFRA---IAAKEEKSERALELTEIIVRM-----NPAHYT-VWQYRFSLLTSLNKSLEDELRLMNEFAVQN 119 (349)
T ss_dssp CCHHHHHHHHHHHH---HHHTTCCSHHHHHHHHHHHHH-----CTTCHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred eCHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHh-----CchhHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 34677777666654 455567788999999999998 555443 333444555544 5899999999998666
Q ss_pred HHcCChhHHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHH--------HH
Q psy5288 110 TDMGRFIMVAKHHENIAEIYEKEL-E-DQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLD--------KA 179 (186)
Q Consensus 110 ~~~~~~~~~a~~~~~lg~~y~~~l-g-~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~--------~A 179 (186)
.+. ..++..-+.++.. + + +++++++++.++++..+++ ..+|.+.+-++..+|.++ ++
T Consensus 120 PKn------y~aW~hR~wlL~~-l~~~~~~~EL~~~~k~L~~dpkN------y~AW~~R~wvl~~l~~~~~~~~~~~~eE 186 (349)
T 3q7a_A 120 LKS------YQVWHHRLLLLDR-ISPQDPVSEIEYIHGSLLPDPKN------YHTWAYLHWLYSHFSTLGRISEAQWGSE 186 (349)
T ss_dssp CCC------HHHHHHHHHHHHH-HCCSCCHHHHHHHHHHTSSCTTC------HHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CCc------HHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccccccchhhHHHH
Confidence 544 3477777888887 5 7 8999999999999987664 368888888888888777 88
Q ss_pred HHHHHh
Q psy5288 180 IKLYEQ 185 (186)
Q Consensus 180 ~~~~~~ 185 (186)
++++++
T Consensus 187 Le~~~k 192 (349)
T 3q7a_A 187 LDWCNE 192 (349)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.91 E-value=0.0045 Score=39.74 Aligned_cols=64 Identities=16% Similarity=0.007 Sum_probs=50.6
Q ss_pred HHHHHHHHHh-cC---CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 82 CFVDAANCYK-KS---NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 82 ~~~~a~~~y~-~~---~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
.+...|.++. .. ..++|..++++|+.+...+. ..+..+|.++..+ |+|++|+.+|+++++..+.
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~------rA~~~lg~~~~~~-g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE------AALSLIANDHFIS-FRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHT-TCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC
Confidence 3445555553 22 46999999999999876663 3777899999996 9999999999999998776
No 226
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.035 Score=45.53 Aligned_cols=105 Identities=5% Similarity=-0.063 Sum_probs=85.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q psy5288 45 RAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHE 123 (186)
Q Consensus 45 ~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~ 123 (186)
..|..|...|+++.|+++|.++..-.... ......+.....++... ++..+..++.++..+....+++...+....
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~---~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAIST---GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCC---CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 34778899999999999999987755433 33455666666666554 999999999999999988899888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 124 NIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 124 ~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
-.|.++... ++|..|..+|-.+..-+...
T Consensus 213 ~~gl~~l~~-r~f~~Aa~~f~e~~~t~~~~ 241 (429)
T 4b4t_R 213 YYGIHCLAV-RNFKEAAKLLVDSLATFTSI 241 (429)
T ss_dssp HHHHGGGGT-SCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHh-ChHHHHHHHHHHHhccCCcc
Confidence 889998885 99999999999988766543
No 227
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.19 Score=44.18 Aligned_cols=122 Identities=7% Similarity=-0.018 Sum_probs=76.3
Q ss_pred hcCC-HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHH----HHcCCh--------h
Q psy5288 52 LGKK-WNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS--NPAEAIKAIERAVEIH----TDMGRF--------I 116 (186)
Q Consensus 52 ~~g~-~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~--~~~~A~~~~~~Al~i~----~~~~~~--------~ 116 (186)
..++ ++.|++.+++...- +|........-...+.... +--+|++...++++-. ..+... .
T Consensus 260 ~t~~~~~~a~~~le~L~~~-----~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~ 334 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKK-----DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMN 334 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhh-----CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccC
Confidence 3444 46677777665443 4444332222222233332 3456777777776432 222111 1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 117 MVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..+..+..-+.-+.++ |+|+-|+++-++|+.+.+.+ -.+|..|+.+|+.+|+|+.|+-.++.
T Consensus 335 ~~~~LL~~Qa~FLl~K-~~~elAL~~Ak~AV~~aPse------F~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 335 CMSDLLNIQTNFLLNR-GDYELALGVSNTSTELALDS------FESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcc-CcHHHHHHHHHHHHhcCchh------hHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 1222444445555666 99999999999999997764 37999999999999999999987653
No 228
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.65 E-value=0.046 Score=47.58 Aligned_cols=165 Identities=11% Similarity=0.074 Sum_probs=104.0
Q ss_pred HHhHH-HHHHHHHHhhccCCCCcc---cccc-CCCCHHHHHHHHHHHHHHH-----------------------------
Q psy5288 5 EQKAR-QLVAEAEKKISSSSKGFF---SQFT-GGNKTDEAIDLYVRAGNLF----------------------------- 50 (186)
Q Consensus 5 ~~~~~-~~~~~a~~~~~~~~~~~~---~~~~-~~~~~~~A~~~y~~ag~~~----------------------------- 50 (186)
+++|. ..+..|-+... .+..++ ..+. ..+++++|-++|.++....
T Consensus 359 ~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 35664 77888866554 111111 1112 4577888888887775432
Q ss_pred -------HhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHcCChhHHHHH
Q psy5288 51 -------KLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS--NPAEAIKAIERAVEIHTDMGRFIMVAKH 121 (186)
Q Consensus 51 -------~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~--~~~~A~~~~~~Al~i~~~~~~~~~~a~~ 121 (186)
++.|+.+.|...|.+|.+.. +......|...+.+-... +++.|...|+++++.+.... ..
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~-----~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~------~~ 506 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLK-----KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDG------EY 506 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTG-----GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH------HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch------HH
Confidence 23444555555555554420 111123344444443333 58999999999999865442 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+...+..... +|+.+.|..+|++|+...+. +......|......-...|+.+.+.+++++
T Consensus 507 w~~y~~fe~~-~~~~~~AR~lferal~~~~~---~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R 566 (679)
T 4e6h_A 507 INKYLDFLIY-VNEESQVKSLFESSIDKISD---SHLLKMIFQKVIFFESKVGSLNSVRTLEKR 566 (679)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHTTTSSS---TTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566777677 49999999999999997653 123346778878888888999999988875
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.64 E-value=0.021 Score=44.59 Aligned_cols=87 Identities=14% Similarity=0.078 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHcCChh-HHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q psy5288 56 WNDGGNAFLQAGTLHLKNNNKH-DAGLCFVDAANCYKKS------NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEI 128 (186)
Q Consensus 56 ~~~A~~~y~~a~~~~~~~~~~~-~aa~~~~~a~~~y~~~------~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~ 128 (186)
...|....++++++ +|. ..+.+|.-+|.+|... ++++|.++|++|++|....+ ...++..|..
T Consensus 179 l~~A~a~lerAleL-----DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-----id~~v~YA~~ 248 (301)
T 3u64_A 179 VHAAVMMLERACDL-----WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-----PDHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHHH-----CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-----SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-----chHHHHHHHH
Confidence 67788888888888 555 3577888999999883 89999999999999987431 2266777887
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 129 YEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 129 y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
+....|+++.|..++++|+..-+.
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCC
Confidence 765239999999999999998665
No 230
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.63 E-value=0.054 Score=45.35 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHH
Q psy5288 82 CFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSAN 160 (186)
Q Consensus 82 ~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~ 160 (186)
.|..+...|-+. ++++|.+.+++-. ..|-.+. ..++..+=..|-.. |+.++|...|++..+. +..+..
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~----~~g~~Pd-~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~----G~~Pd~- 175 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMK----AFGIQPR-LRSYGPALFGFCRK-GDADKAYEVDAHMVES----EVVPEE- 175 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH----HTTCCCC-HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHT----TCCCCH-
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCc-cceehHHHHHHHHC-CCHHHHHHHHHHHHhc----CCCCCH-
Confidence 354555555444 7777777776532 2232221 22455566666774 9999999999887652 222222
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 161 KCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 161 ~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.+|..+-..|.+.|+.++|.++|++
T Consensus 176 ~ty~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 176 PELAALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 5788888999999999999999876
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.59 E-value=0.13 Score=44.54 Aligned_cols=74 Identities=22% Similarity=0.143 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH------HHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHH------HHHHH
Q psy5288 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGT------LHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAI------ERAVE 107 (186)
Q Consensus 41 ~~y~~ag~~~~~~g~~~~A~~~y~~a~~------~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~------~~Al~ 107 (186)
..+.++|..+...++++.|.+||.++.+ ++...++++. +.+++.+.... ++..|..+| ++|++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~----~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~ 757 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEG----LVTLAKDAETTGKFNLAFNAYWIAGDIQGAKD 757 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHH----HHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHH----HHHHHHHHHHcCchHHHHHHHHHcCCHHHHHH
Confidence 4567778888888888888888876533 3333444432 22445554443 555555444 34445
Q ss_pred HHHHcCChhHH
Q psy5288 108 IHTDMGRFIMV 118 (186)
Q Consensus 108 i~~~~~~~~~~ 118 (186)
++.+.+..+.+
T Consensus 758 ~~~~~~~~~~A 768 (814)
T 3mkq_A 758 LLIKSQRFSEA 768 (814)
T ss_dssp HHHHTTCHHHH
T ss_pred HHHHcCChHHH
Confidence 55555554444
No 232
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.92 E-value=0.2 Score=35.18 Aligned_cols=68 Identities=15% Similarity=0.018 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 81 LCFVDAANCYKKS----NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 81 ~~~~~a~~~y~~~----~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
.+..+.|-++... +.++++..++..++.. ++..-..++..+|..|.. +|+|++|..++++++++-|++
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~k-l~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYR-LKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCC
Confidence 4445667676654 4568999988876632 344667899999999988 599999999999999997753
No 233
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.085 Score=43.21 Aligned_cols=101 Identities=12% Similarity=0.083 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHH
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSA 159 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~ 159 (186)
..+..+|..|.+. ++++|+++|.+..+.....+. ...++..+-+++... +++..+..++.++-.+....+++...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~-~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFY-NDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 3455778888765 889999999997765544443 445666677777775 99999999999999998887777666
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 160 NKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 160 ~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+....--|.++...++|..|..+|-.
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e 233 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVD 233 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 66666778888899999999998853
No 234
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.70 E-value=0.22 Score=41.65 Aligned_cols=127 Identities=9% Similarity=-0.041 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHH
Q psy5288 42 LYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNN-NKHDAGLCFVDAANCYKKS----------NPAEAIKAIERAVEIHT 110 (186)
Q Consensus 42 ~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~-~~~~aa~~~~~a~~~y~~~----------~~~~A~~~~~~Al~i~~ 110 (186)
.+....+.|.+.|+.++|.+.|.++.+- | .|+ ...|.-+...+... ..++|.+.|++-.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~----Gv~pd--~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~---- 97 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN----GVQLS--QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI---- 97 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH----TCCCC--HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC--HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH----
Confidence 4566678889999999999999887653 2 222 33465565566432 2456666665432
Q ss_pred HcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 111 DMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 111 ~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..|-.+. ..++..+-..|-.. |++++|...|++.... +..+. ..+|..+-..|.+.|+.++|.++|++
T Consensus 98 ~~G~~Pd-~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~----g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 98 VDKVVPN-EATFTNGARLAVAK-DDPEMAFDMVKQMKAF----GIQPR-LRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HTTCCCC-HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHT----TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCCCCC-HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCc-cceehHHHHHHHHCCCHHHHHHHHHH
Confidence 2232221 23667777778885 9999999999886542 22222 25788888999999999999999976
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.30 E-value=0.26 Score=33.45 Aligned_cols=62 Identities=11% Similarity=0.025 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 119 AKHHENIAEIYEKELEDQEK---AIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~---Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..+.+++|.++... .+... +|..++..+.- +.+.....|+..||..+.++|+|++|..+++.
T Consensus 35 ~~~~F~yAw~Lv~S-~~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~ 99 (126)
T 1nzn_A 35 KSTQFEYAWCLVRT-RYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 99 (126)
T ss_dssp HHHHHHHHHHHTTS-SSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34667777777653 55544 77777765542 22334557888888888888888888888764
No 236
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.17 E-value=0.82 Score=37.96 Aligned_cols=80 Identities=9% Similarity=-0.069 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhc
Q psy5288 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALT 173 (186)
Q Consensus 94 ~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~ 173 (186)
+.+.|...|++| . ..+ ....++...+.+.....++++.|...|++++..+++. + ..+...+......
T Consensus 301 ~~~~AR~i~~~A-~---~~~---~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~--~----~~~~~yid~e~~~ 367 (493)
T 2uy1_A 301 GLELFRKLFIEL-G---NEG---VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS--T----LLKEEFFLFLLRI 367 (493)
T ss_dssp CHHHHHHHHHHH-T---TSC---CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--H----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh-h---CCC---CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--H----HHHHHHHHHHHHc
Confidence 455566666666 1 111 1234566666665543236999999999999987643 1 3455567777889
Q ss_pred cCHHHHHHHHHhC
Q psy5288 174 DHLDKAIKLYEQL 186 (186)
Q Consensus 174 g~~~~A~~~~~~~ 186 (186)
|+.++|..+|+++
T Consensus 368 ~~~~~aR~l~er~ 380 (493)
T 2uy1_A 368 GDEENARALFKRL 380 (493)
T ss_dssp TCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998874
No 237
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.06 E-value=0.1 Score=43.79 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
-.++..||.+...+ ..++.|..+|.+|..+.+..| ..++.||.+....|+.-+|+=+|-|
T Consensus 152 hr~l~~LGDL~RY~-~~~~~A~~~Y~~A~~~~P~~G------~~~nqLavla~~~~~~l~a~y~y~r 211 (497)
T 1ya0_A 152 QHCLVHLGDIARYR-NQTSQAESYYRHAAQLVPSNG------QPYNQLAILASSKGDHLTTIFYYCR 211 (497)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTBS------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHH-HHHHHHHHHHHHHHHhCCCCC------chHHHHHHHHhcccccHHHHHHHHH
Confidence 34788999999996 999999999999999999887 6889999999999999999877654
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.99 E-value=1.2 Score=36.48 Aligned_cols=102 Identities=9% Similarity=-0.053 Sum_probs=71.8
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHhccCChHHHH
Q psy5288 83 FVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAAD-CYAGEENKSSAN 160 (186)
Q Consensus 83 ~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~-l~~~~~~~~~~~ 160 (186)
-..++.+|... ++.+|...++....=.....+......++....++|... +++.+|...+.++.. .+.....+....
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~-~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILK-GDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 34556666544 666776666554322222234455566677777788885 999999999999875 455555666777
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 161 KCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 161 ~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.++.-.|.++...++|.+|..+|..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e 243 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQE 243 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8889999999999999999998864
No 239
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=94.40 E-value=0.47 Score=38.90 Aligned_cols=34 Identities=0% Similarity=0.025 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGT 68 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~ 68 (186)
..+-=++++.++.+.+...|++.+|+.|+..++.
T Consensus 6 ~pdl~~~wl~~La~~h~~~~n~~EAa~cl~~~aa 39 (428)
T 2wm9_A 6 TPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTA 39 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455568888999999999999999999976554
No 240
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=94.35 E-value=0.69 Score=38.02 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCh------------h-----HHHHHHHHHHHHHhcC-CH
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNK------------H-----DAGLCFVDAANCYKKS-NP 95 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~------------~-----~aa~~~~~a~~~y~~~-~~ 95 (186)
++.+-=+.++.++.+.+...++|.+|+-|+...++++.-...+ . ..-..|..+...+.+. .+
T Consensus 29 ~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~ 108 (436)
T 2yin_A 29 NREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMW 108 (436)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcH
Confidence 5677778888888899999999999999986665553311110 0 0112455666666655 67
Q ss_pred HHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHH
Q psy5288 96 AEAIKAIERAVEIHTDM-GRFIMVAKHHENIAEIYEK 131 (186)
Q Consensus 96 ~~A~~~~~~Al~i~~~~-~~~~~~a~~~~~lg~~y~~ 131 (186)
+.|+..|+..+.++... -++...+.++..++.+|..
T Consensus 109 E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~~ 145 (436)
T 2yin_A 109 EEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYES 145 (436)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888877777765 7777777777777777764
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.05 E-value=2.5 Score=33.89 Aligned_cols=57 Identities=16% Similarity=0.073 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
...++..+.. +|++++|+..+.+++...+-.. ..+..+-.+|...|+..+|++.|++
T Consensus 174 ~~~~~~~~l~-~g~~~~a~~~l~~~~~~~P~~E------~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 174 HTAKAEAEIA-CGRASAVIAELEALTFEHPYRE------PLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445555566 4788888877777777655321 4566666777778888888877764
No 242
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.49 E-value=0.33 Score=40.67 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADC 149 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l 149 (186)
.++..+|++.+-. .+..|..+|.+|..+.+..|. .++.||.+...+ |+.-+|+-+|.+++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~------~~nqLavla~~~-~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ------PYNQLAILASSK-GDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH------HHHHHHHHHHHT-TCHHHHHHHHHHHHSS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc------hHHHHHHHHhcc-cccHHHHHHHHHHHhc
Confidence 3566778887765 789999999999999999998 688899999996 9999999999999864
No 243
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=92.46 E-value=3.9 Score=33.57 Aligned_cols=132 Identities=18% Similarity=0.109 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHcC
Q psy5288 36 TDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS--NPAEAIKAIERAVEIHTDMG 113 (186)
Q Consensus 36 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~--~~~~A~~~~~~Al~i~~~~~ 113 (186)
-|+-..+-.++.+.|+..++.+-=+.+..+..+++...++..+||.++.-.+.++.-. ..-.++. +.. -+...-
T Consensus 11 ~d~r~~~~~~l~~~y~~~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~---~~~-~~~~qt 86 (436)
T 2yin_A 11 KDNRMSCTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVM---QTG-QQHPQT 86 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC------------------C
T ss_pred cchHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccc---cCC-CCcccc
Confidence 3444456678888999999999999999999999999999999998886655443221 1111110 000 000000
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHh
Q psy5288 114 RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE-ENKSSANKCLIKIANYSAL 172 (186)
Q Consensus 114 ~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~-~~~~~~~~~~~~la~~y~~ 172 (186)
........+..+...+.. .+.|+.|+..|+..+.+++.. .+....+.++..++.+|..
T Consensus 87 ~~~~ke~L~~~~i~~f~k-g~~~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~~ 145 (436)
T 2yin_A 87 HRQLKETLYETIIGYFDK-GKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYES 145 (436)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122356667777776 588999999999999999875 6666667788888888754
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.96 E-value=2.2 Score=30.54 Aligned_cols=22 Identities=5% Similarity=-0.213 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q psy5288 43 YVRAGNLFKLGKKWNDGGNAFL 64 (186)
Q Consensus 43 y~~ag~~~~~~g~~~~A~~~y~ 64 (186)
+.+.|......|+++=|.+||.
T Consensus 37 Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 37 WERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHH
Confidence 3344444444555554444443
No 245
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.81 E-value=1.2 Score=31.24 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..=+..+.+-+.. .. +++.++|.+.|+.++.++++ . +.+|+..|..-++.|+.++|.+++.+
T Consensus 58 rrYI~LWIrYA~~-~e-i~D~d~aR~vy~~a~~~hKk-----F-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 58 ESFARIQVRFAEL-KA-IQEPDDARDYFQMARANCKK-----F-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HHHHHHHHHHHHH-HH-HHCGGGCHHHHHHHHHHCTT-----B-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HH-hcCHHHHHHHHHHHHHHhHH-----H-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3445566666755 44 48999999999999887221 2 58899999999999999999888754
No 246
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.72 E-value=1 Score=37.87 Aligned_cols=76 Identities=9% Similarity=-0.043 Sum_probs=61.0
Q ss_pred ChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 75 NKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDM-GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 75 ~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~-~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
+....+..+.-+-..|... .+++|..+..++. +.+. .+..+.+.++.-+|.++--+ ++|.+|-+++..|+...+.
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q-~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQ-LDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTSSCSC
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCc
Confidence 5667788888888888877 7888888888774 4333 34567789999999999997 9999999999999987765
Q ss_pred c
Q psy5288 153 E 153 (186)
Q Consensus 153 ~ 153 (186)
.
T Consensus 303 ~ 303 (523)
T 4b4t_S 303 N 303 (523)
T ss_dssp S
T ss_pred c
Confidence 3
No 247
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.61 E-value=3.2 Score=29.09 Aligned_cols=91 Identities=19% Similarity=0.026 Sum_probs=66.3
Q ss_pred CCH------HHHHHHHHHHHHHHHH--cCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q psy5288 54 KKW------NDGGNAFLQAGTLHLK--NNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHEN 124 (186)
Q Consensus 54 g~~------~~A~~~y~~a~~~~~~--~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~ 124 (186)
|++ ++-.++|++|...... -+....=+..+.+-+.. ... ++++|.+.|+.++.+ ...+ |.++..
T Consensus 27 g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~---hKkF---AKiwi~ 99 (161)
T 4h7y_A 27 SVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN---CKKF---AFVHIS 99 (161)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH---CTTB---HHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH---hHHH---HHHHHH
Confidence 777 7778888888775422 11222223334344433 333 899999999999997 4455 889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 125 IAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 125 lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
.|.--..+ |+.+.|...+.+|+.+.++
T Consensus 100 ~AqFEiRq-gnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 100 FAQFELSQ-GNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHc-ccHHHHHHHHHHHhccCCC
Confidence 99988887 9999999999999998765
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.43 E-value=2.7 Score=29.01 Aligned_cols=64 Identities=13% Similarity=0.038 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 117 MVAKHHENIAEIYEKE--LEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~~--lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
....+.++.|.++... -.+..++|..++..+.-.+ .....|+..||.-+.++|+|++|.++.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~-----~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~ 102 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-----SRRRECLYYLTIGCYKLGEYSMAKRYVDT 102 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC-----STHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-----cchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3455667777776552 1234577777777666321 12357888888888888888888887754
No 249
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=90.05 E-value=4.1 Score=29.40 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH--HHHhc----------cCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 124 NIAEIYEKELEDQEKAIDHYQHAA--DCYAG----------EENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 124 ~lg~~y~~~lg~~~~Ai~~y~kA~--~l~~~----------~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
--+.||.. +.+|..|+.+.++.+ ++-+. --++....-.+..+|.++..+|+-++||.+|.+
T Consensus 67 Yk~LCy~k-lKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 67 YESLCYKK-KKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 34667888 699999999999998 32211 012223334678899999999999999999864
No 250
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=89.64 E-value=1.1 Score=27.84 Aligned_cols=36 Identities=8% Similarity=-0.052 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 36 TDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 36 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
.++|+++..+| .-....|++++|+.+|..+++.+..
T Consensus 16 ~~~Ai~lv~~A-ve~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 16 EEMARKYAINA-VKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHH
Confidence 35566655555 5567888888888888888887653
No 251
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=89.04 E-value=1.3 Score=27.48 Aligned_cols=34 Identities=18% Similarity=-0.048 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy5288 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHL 71 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~ 71 (186)
+.|+++..+| .-....|++++|+.+|.++++.+.
T Consensus 9 ~~Ai~lv~~A-ve~D~~g~y~eAl~lY~~aie~l~ 42 (83)
T 2v6y_A 9 DMARKYAILA-VKADKEGKVEDAITYYKKAIEVLS 42 (83)
T ss_dssp HHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHH
Confidence 4555544444 445667777777777777777654
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.78 E-value=4.2 Score=37.38 Aligned_cols=124 Identities=6% Similarity=0.001 Sum_probs=78.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHc-----------------CChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy5288 46 AGNLFKLGKKWNDGGNAFLQAGTLHLKN-----------------NNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVE 107 (186)
Q Consensus 46 ag~~~~~~g~~~~A~~~y~~a~~~~~~~-----------------~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~ 107 (186)
.|.++...|++++|.+||.++..-.... .....-..+|..+..++.+. -++.++++.+.|++
T Consensus 848 ~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~ 927 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 927 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3778889999999999998875432110 01111235677888888776 67888998888877
Q ss_pred HHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHH
Q psy5288 108 IHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDK 178 (186)
Q Consensus 108 i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~ 178 (186)
.. ..++.......+.++=..+.. +|+|++|...+...= .... ...|+..|-..+...|..++
T Consensus 928 ~~-~~~~~~~~~~l~~~iFk~~L~-l~~ye~Ay~aL~~~p----d~~~---r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 928 SK-ETDDEDLSIAITHETLKTACA-AGKFDAAHVALMVLS----TTPL---KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HC-CSCCHHHHHHHHHHHHHHHHH-HCCSGGGGHHHHHHH----HSSS---CHHHHHHHHHHHHHHCCHHH
T ss_pred hc-cCCChhhHHHHHHHHHHHHHh-hCCHHHHHHHHHhCC----CHHH---HHHHHHHHHHHHHhCCChhh
Confidence 53 223444445567777677777 699999877764322 1111 13566666666665555443
No 253
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=88.66 E-value=1.4 Score=27.95 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=30.8
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 114 RFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 114 ~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
.+-..|-.+...+..+... |.|++||+++++|..+..+
T Consensus 10 spLn~AH~~~RrAe~ll~~-gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAA-GKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp THHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence 3445567778888888886 9999999999999988764
No 254
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=88.50 E-value=1.3 Score=27.54 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=19.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 126 AEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 126 g~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
|.-.... |+|++|+.+|.+|++++..
T Consensus 26 Ave~D~~-g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 26 AVKADKE-GNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHHHHH
Confidence 3333443 8999999999999888664
No 255
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=88.15 E-value=4.6 Score=33.39 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHcCChhHHH
Q psy5288 42 LYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS--NPAEAIKAIERAVEIHTDMGRFIMVA 119 (186)
Q Consensus 42 ~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~--~~~~A~~~~~~Al~i~~~~~~~~~~a 119 (186)
.|..-+....+.+..+.|...|.+| .. +......|...+.+-... +++.|...|++++..+.. ++
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~---- 354 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN------EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--ST---- 354 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT------SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC------CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CH----
Confidence 3444444555567788888888877 21 111123444444333222 688999999999886532 22
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 120 KHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 120 ~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..+...+..... +|+.+.|...|+++. + ....|......-...|+.+.+.+++++
T Consensus 355 ~~~~~yid~e~~-~~~~~~aR~l~er~~----k------~~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 355 LLKEEFFLFLLR-IGDEENARALFKRLE----K------TSRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp HHHHHHHHHHHH-HTCHHHHHHHHHHSC----C------BHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHH----H------HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 234455666666 599999999999872 1 124566666655666888777776654
No 256
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=87.47 E-value=1.6 Score=27.03 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 125 IAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 125 lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
-|.-.... |+|++|+.+|.+|++++..
T Consensus 17 ~Ave~D~~-g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 17 LAVKADKE-GKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-ccHHHHHHHHHHHHHHHHH
Confidence 33334453 8999999999999998764
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.00 E-value=2.9 Score=38.45 Aligned_cols=97 Identities=10% Similarity=0.035 Sum_probs=71.5
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHH-----------------HHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5288 85 DAANCYKKS-NPAEAIKAIERAVEIH-----------------TDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146 (186)
Q Consensus 85 ~a~~~y~~~-~~~~A~~~~~~Al~i~-----------------~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA 146 (186)
-.|.+|... ++++|.++|++|..-. ...........+|..+..+++.. +.++.++++-..|
T Consensus 847 l~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~-~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 847 LKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEE-SAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHT-SCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 567777776 9999999998874321 11112233456899999999996 9999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy5288 147 ADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 147 ~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
+..... +.+......|.++=..+..+|+|++|...+
T Consensus 926 i~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 926 DASKET-DDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred HHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 986443 333334457778888889999999997765
No 258
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=86.96 E-value=6.7 Score=28.03 Aligned_cols=27 Identities=7% Similarity=-0.076 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy5288 81 LCFVDAANCYKKS-NPAEAIKAIERAVE 107 (186)
Q Consensus 81 ~~~~~a~~~y~~~-~~~~A~~~~~~Al~ 107 (186)
..|.++|+..... +++-|.+||+++-+
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 4677777777665 77888888776544
No 259
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=86.83 E-value=1.3 Score=29.49 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 123 ENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 123 ~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
...|.-.... |+|++|+.+|.+|++++-.
T Consensus 22 v~~Ave~D~a-g~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 22 ASKAAQEDKA-GNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp HHHHHHHHHH-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-cCHHHHHHHHHHHHHHHHH
Confidence 3334344443 8999999999999998664
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.66 E-value=2 Score=36.17 Aligned_cols=82 Identities=11% Similarity=0.053 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHhccCHHHH
Q psy5288 101 AIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE-ENKSSANKCLIKIANYSALTDHLDKA 179 (186)
Q Consensus 101 ~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A 179 (186)
.+-.+++....-.|....+.+++.+=+.|... +.|++|..+..++- ++.. ........++.-+|.++.-.++|.+|
T Consensus 213 ~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~-~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA 289 (523)
T 4b4t_S 213 TMMKFLKIASLKHDNETKAMLINLILRDFLNN-GEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTA 289 (523)
T ss_dssp HHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHS-SCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHcc-CcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33444444444467788999999999999995 99999999999885 5543 23344467888999999999999999
Q ss_pred HHHHHh
Q psy5288 180 IKLYEQ 185 (186)
Q Consensus 180 ~~~~~~ 185 (186)
.+++..
T Consensus 290 ~~~L~~ 295 (523)
T 4b4t_S 290 NEYIIA 295 (523)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998863
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.61 E-value=5.8 Score=26.99 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 119 AKHHENIAEIYEKE--LEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 119 a~~~~~lg~~y~~~--lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..+.++.|.++... -.+..++|..++..+.-. +.....|+..||.-+.++|+|++|.++.+.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~ 103 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDT 103 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----cchhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 35666777666542 123457788887766532 223457888888888899999988888764
No 262
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=85.53 E-value=3.9 Score=25.29 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
-.+.|+.+..+| .-....|++++|+.+|..+++.+..
T Consensus 9 ~l~~A~~l~~~A-v~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 9 FLTKGIELVQKA-IDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 356666666655 4557788888888888888887653
No 263
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=85.46 E-value=3.7 Score=25.99 Aligned_cols=38 Identities=11% Similarity=0.189 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
+-.+.|+++..+| .-....|++++|+.+|..+++.+..
T Consensus 10 ~~l~~Ai~lv~~A-ve~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 10 SDSTAAVAVLKRA-VELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp CHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4455666666665 5568889999999999999998764
No 264
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=84.27 E-value=5.6 Score=24.76 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
|.-+..-|.-.... |+|++|+.+|.+|++++-.
T Consensus 16 A~~lv~~Ave~D~~-g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 16 AATVLKRAVELDSE-SRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 33344444444554 9999999999999998664
No 265
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=84.15 E-value=2.7 Score=27.91 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 36 TDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 36 ~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
.+.|+.+..+| .-....|++++|+.+|..+++++..
T Consensus 15 l~kAi~lv~~A-ve~D~ag~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 15 LQKAIDLASKA-AQEDKAGNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp HHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHccCHHHHHHHHHHHHHHHHH
Confidence 56777766666 4557789999999999999997664
No 266
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=83.79 E-value=3.1 Score=25.94 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
|.-..|+++..+| .-....|++++|+.+|..+++.+..
T Consensus 11 ~~~~~A~~lv~~A-ve~D~~g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 11 PQSTAAATVLKRA-VELDSESRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp CHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4445666666655 4457788899999999888887653
No 267
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=83.16 E-value=6.6 Score=24.76 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
+...|.-.... |+|++|+.+|.+|++++..
T Consensus 18 lv~~Ave~D~~-g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 18 VLKRAVELDAE-SRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHHHHHH
Confidence 33444444554 8999999999999998764
No 268
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.35 E-value=3.9 Score=27.83 Aligned_cols=54 Identities=7% Similarity=-0.093 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 94 ~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
+..+++..++..+. . ++...-.++.-+|.-+.. +|+|++|..+.+..+++-+.+
T Consensus 58 d~~~GI~LLe~l~~---~--~~~~~Rd~LYyLAvg~yk-lgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 58 DERLGVKILTDIYK---E--AESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHHHHHHHHH---H--CGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHh---c--CcchhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCC
Confidence 44577777765443 2 255677899999999998 699999999999999986654
No 269
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=81.60 E-value=7.1 Score=24.02 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 121 ~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
.+...|.-.... |+|++|+.+|.+|++++-.
T Consensus 15 ~l~~~Av~~D~~-g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 15 ELVQKAIDLDTA-TQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 334444444554 9999999999999998654
No 270
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=81.08 E-value=15 Score=29.93 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhc-------CCHH-HHHHHH-----H-HHHH--H-HHHcC-ChhH
Q psy5288 56 WNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK-------SNPA-EAIKAI-----E-RAVE--I-HTDMG-RFIM 117 (186)
Q Consensus 56 ~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~-------~~~~-~A~~~~-----~-~Al~--i-~~~~~-~~~~ 117 (186)
++-=+..+.+..+.+...++..+|+.++.-++.+... ..++ .+.... + .++. . ..... ...+
T Consensus 7 pdl~~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~ 86 (428)
T 2wm9_A 7 PELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDV 86 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHH
Confidence 3333556667777777777777777777555443333 1110 000000 0 0000 0 00000 1222
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSAL 172 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~ 172 (186)
.-..+......+.. .+.++.|+..|+..+.+++...+......++..++.+|..
T Consensus 87 l~~ll~~ai~~f~k-g~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y~~ 140 (428)
T 2wm9_A 87 LMELLEQCADGLWK-AERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSK 140 (428)
T ss_dssp HHHHHHHHHHHHHH-TTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 33345556666666 5778888888888888888776666666677777777654
No 271
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=80.01 E-value=4.1 Score=25.86 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy5288 40 IDLYVRAGNLFKLGKKWNDGGNAFLQAGTLH 70 (186)
Q Consensus 40 ~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~ 70 (186)
+-.+.+-++.+...|+|++||+|..+++...
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~yL 45 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATTYL 45 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4445555666777777777777777777653
No 272
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=77.79 E-value=13 Score=24.88 Aligned_cols=66 Identities=15% Similarity=0.054 Sum_probs=47.5
Q ss_pred HHHHHHHHhcC-C---HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 83 FVDAANCYKKS-N---PAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 83 ~~~a~~~y~~~-~---~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
-.+.+-++... . ..+++..++..+. .+++...-.++..||..+.. +|+|++|..+.+..+++-|.+
T Consensus 38 ~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~----~~~p~~~Rd~lY~LAvg~yk-lg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 38 QFEYAWCLVRTRYNDDIRKGIVLLEELLP----KGSKEEQRDYVFYLAVGNYR-LKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHTT----TSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhCCCC
Confidence 34666666554 3 3456666665433 23355777899999999998 699999999999999986654
No 273
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.48 E-value=45 Score=30.06 Aligned_cols=93 Identities=9% Similarity=0.024 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH-----------------HHHcCChhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy5288 79 AGLCFVDAANCYKKS-NPAEAIKAIERAVEI-----------------HTDMGRFIMVAKHHENIAEIYEKELEDQEKAI 140 (186)
Q Consensus 79 aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i-----------------~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai 140 (186)
.+..| -.|.+|... ++++|..+|++|..- ............+|..+..+++.. +.++-++
T Consensus 840 ~~~~y-v~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~-~a~~~vi 917 (950)
T 4gq2_M 840 PIAVY-LKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEE-SAYIDAL 917 (950)
T ss_dssp HHHHH-HHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred hHHHH-HHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhc-CCHHHHH
Confidence 34455 567788776 999999999877632 112222223445899999999996 9999999
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHhcc
Q psy5288 141 DHYQHAADCYAGEENKSSANKCLIKIANYSALTD 174 (186)
Q Consensus 141 ~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g 174 (186)
+.-+.|+..... +++......|.++=......|
T Consensus 918 ~fA~lAI~~~~~-dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 918 EFSLLADASKET-DDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHTCCS-CCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhccc-CCccchHHHHHHHHHHHhhCC
Confidence 999999987653 445444556666555554443
No 274
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=73.41 E-value=19 Score=24.69 Aligned_cols=64 Identities=11% Similarity=-0.077 Sum_probs=46.0
Q ss_pred HHHHHHHhcC----CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy5288 84 VDAANCYKKS----NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153 (186)
Q Consensus 84 ~~a~~~y~~~----~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~ 153 (186)
++.+-+..+. +..+++..++..+. . .+...-.|+.-||.-+.. +|+|++|..+.+..+++-+.+
T Consensus 43 F~YAw~Lv~S~~~~di~~GI~LLe~l~~---~--~~~~~RdcLYyLAvg~yk-l~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 43 FNYAWGLIKSTDVNDERLGVKILTDIYK---E--AESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHH---H--CCSTHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHh---c--CccchhHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCCc
Confidence 3555454443 44677777776544 2 333566789999999998 699999999999999986644
No 275
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=71.87 E-value=28 Score=25.84 Aligned_cols=71 Identities=7% Similarity=0.031 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcC------CHHHHHHHHHHHHHHHHH-c-CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy5288 80 GLCFVDAANCYKKS------NPAEAIKAIERAVEIHTD-M-GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCY 150 (186)
Q Consensus 80 a~~~~~a~~~y~~~------~~~~A~~~~~~Al~i~~~-~-~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~ 150 (186)
..++.--|+.|+-. +.+.|..+|+.|.++... + ..++-.-....+.+..|..-++++++|+..-++|.++.
T Consensus 120 VFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 120 FFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 33343457777643 578999999999999875 3 22232333344444444444799999999999998864
No 276
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=71.73 E-value=4.1 Score=24.97 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
..++|+=|-- +|+|+.|+.+|+.++.-..+
T Consensus 15 ~~k~ARe~Al-~GnYdta~~yY~g~~~qI~k 44 (78)
T 2rpa_A 15 NVKLAREYAL-LGNYDSAMVYYQGVLDQMNK 44 (78)
T ss_dssp HHHHHHHHHH-HTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hcChHHHHHHHHHHHHHHHH
Confidence 4567777777 59999999999999987654
No 277
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=71.65 E-value=43 Score=30.88 Aligned_cols=98 Identities=6% Similarity=-0.043 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHH
Q psy5288 80 GLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSS 158 (186)
Q Consensus 80 a~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~ 158 (186)
-..|.-+...|-+. +.++|.+.+..-.++....-.+.. .+|+.|-.-|-.. |+.++|.+.|.+-.+ .|-.+.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv--vTYNtLI~Glck~-G~~~eA~~Lf~eM~~----~G~~PD 199 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL--DMYNAVMLGWARQ-GAFKELVYVLFMVKD----AGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH--HHHHHHHHHHHHH-TCHHHHHHHHHHHHH----TTCCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH--hHHHHHHHHHHhC-CCHHHHHHHHHHHHH----cCCCCc
Confidence 34565666666554 888888888654433322112222 2566666667775 999999999988754 333233
Q ss_pred HHHHHHHHHHHHHhccC-HHHHHHHHHh
Q psy5288 159 ANKCLIKIANYSALTDH-LDKAIKLYEQ 185 (186)
Q Consensus 159 ~~~~~~~la~~y~~~g~-~~~A~~~~~~ 185 (186)
. .+|.-+-..+.+.|+ .++|.++|++
T Consensus 200 v-vTYntLI~glcK~G~~~e~A~~Ll~E 226 (1134)
T 3spa_A 200 L-LSYAAALQCMGRQDQDAGTIERCLEQ 226 (1134)
T ss_dssp H-HHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 2 577777778888887 4788888875
No 278
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=71.13 E-value=35 Score=28.44 Aligned_cols=30 Identities=20% Similarity=0.013 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCY 150 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~ 150 (186)
+..+.+.+.-+.. |..++|-..=++|-++-
T Consensus 488 GDyy~~AA~k~~y--G~~eqAe~l~~~A~~~~ 517 (526)
T 2wb7_A 488 GDYYVNAARKALN--GDLEQAKIDAEKAKEYS 517 (526)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhc--CccHHHHHHHHHHHHHH
Confidence 3355555555553 67777776666666653
No 279
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=70.97 E-value=5.2 Score=24.20 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
...+|..+..+ |++++|+.++-+|+.+++.
T Consensus 20 eV~~GE~L~~~-g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 20 EIQLGEELLAQ-GDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHcCC
Confidence 36689988886 9999999999999999875
No 280
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=69.36 E-value=8 Score=24.63 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 122 ~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
...+|..+..+ |+++.|+.+|-+|+.++..
T Consensus 23 eV~lGE~L~~~-g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 23 EIQLGEELLAQ-GDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHcCC
Confidence 35688888886 9999999999999999875
No 281
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=67.55 E-value=32 Score=24.81 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=57.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH--HH----------HHcCC
Q psy5288 48 NLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVE--IH----------TDMGR 114 (186)
Q Consensus 48 ~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~--i~----------~~~~~ 114 (186)
.+....|.+..+ +-+..+++ .+...|.+ .-||.+. ++..|+.+.++.++ +- .-.=+
T Consensus 41 I~LyyngEY~R~-------Lf~L~~lN---T~Ts~YYk-~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 41 IVLYLNGEYTRA-------LFHLHKLN---TCTSKYYE-SLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp HHHHHTTCHHHH-------HHHHHTCC---BHHHHHHH-HHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred hhhhhcchHhHH-------HHHHHhcc---hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 334445665544 34443433 23344434 3466665 99999999998872 11 11123
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy5288 115 FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCY 150 (186)
Q Consensus 115 ~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~ 150 (186)
+..--..+..+|.+... +|+-++||.+|..+..+.
T Consensus 110 ~~DkEfFy~l~a~lltq-~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTL-SGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp TTCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHH-hcCHHHhhhHhhhhcCCc
Confidence 34445567889999998 699999999998877653
No 282
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=65.86 E-value=48 Score=26.26 Aligned_cols=100 Identities=10% Similarity=-0.027 Sum_probs=54.7
Q ss_pred HHhHHHHHHHHHHhhccCCCCccccccCCCCHHHH-H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q psy5288 5 EQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEA-I--------DLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNN 75 (186)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A-~--------~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~ 75 (186)
++.+.+.+.+|-...+ ..|+..+ ....|-.. . .........+...|++.+++.....++.. +
T Consensus 131 ~~~a~~~l~~Al~L~r---G~~L~~~-~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-----~ 201 (388)
T 2ff4_A 131 FEQASRHLSAALREWR---GPVLDDL-RDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE-----H 201 (388)
T ss_dssp HHHHHHHHHHHHTTCC---SSTTGGG-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----S
T ss_pred HHHHHHHHHHHHHhcC---CCCCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C
Confidence 3445556666666555 4554432 11233322 1 12222345566788888888777777665 4
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HcC
Q psy5288 76 KHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHT-DMG 113 (186)
Q Consensus 76 ~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~-~~~ 113 (186)
|........-+--.+...+..+|++.|++..+.+. ++|
T Consensus 202 P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG 240 (388)
T 2ff4_A 202 PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG 240 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 44443333223333344488888888888877664 345
No 283
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=65.46 E-value=40 Score=25.11 Aligned_cols=75 Identities=12% Similarity=0.083 Sum_probs=47.7
Q ss_pred ChhHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHH-c-CChhHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy5288 75 NKHDAGLCFVDAANCYKKS-----------NPAEAIKAIERAVEIHTD-M-GRFIMVAKHHENIAEIYEKELEDQEKAID 141 (186)
Q Consensus 75 ~~~~aa~~~~~a~~~y~~~-----------~~~~A~~~~~~Al~i~~~-~-~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~ 141 (186)
+++....++.--|..|+-. -.+.|..+|++|.++... + ..++..-....+.+..|..-++++++|+.
T Consensus 115 ~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~ 194 (234)
T 2br9_A 115 TGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACR 194 (234)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred chHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444467777653 135789999999999864 4 33343334444444444444799999999
Q ss_pred HHHHHHHH
Q psy5288 142 HYQHAADC 149 (186)
Q Consensus 142 ~y~kA~~l 149 (186)
.-++|.+-
T Consensus 195 lAk~afd~ 202 (234)
T 2br9_A 195 LAKAAFDD 202 (234)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777664
No 284
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=64.90 E-value=41 Score=25.09 Aligned_cols=75 Identities=15% Similarity=0.078 Sum_probs=47.7
Q ss_pred ChhHHHHHHHHHHHHHhcC------C-----HHHHHHHHHHHHHHHHH-cC-ChhHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy5288 75 NKHDAGLCFVDAANCYKKS------N-----PAEAIKAIERAVEIHTD-MG-RFIMVAKHHENIAEIYEKELEDQEKAID 141 (186)
Q Consensus 75 ~~~~aa~~~~~a~~~y~~~------~-----~~~A~~~~~~Al~i~~~-~~-~~~~~a~~~~~lg~~y~~~lg~~~~Ai~ 141 (186)
+++....++.--|+.|+-+ + .+.|..+|++|.++... +. .++-.-....+.+..|..-++++++|+.
T Consensus 118 ~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~ 197 (236)
T 3iqu_A 118 DAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAIS 197 (236)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred chHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444458887643 1 36889999999999863 43 3343334444445444444799999999
Q ss_pred HHHHHHHH
Q psy5288 142 HYQHAADC 149 (186)
Q Consensus 142 ~y~kA~~l 149 (186)
.-++|.+-
T Consensus 198 lAk~Afd~ 205 (236)
T 3iqu_A 198 LAKTTFDE 205 (236)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777654
No 285
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=64.31 E-value=38 Score=27.28 Aligned_cols=93 Identities=15% Similarity=-0.016 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGR 114 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~ 114 (186)
+|.-|+..+-..-.+.-.-|+.+ ++..|.++....++-=.-...-.+-...|..|+..++.+|+++|-.|.++...-+-
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~-~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY 331 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPP-AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNY 331 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCC-HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC
T ss_pred hCchhhcchhhHHhcCCCCCCCC-HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCC
Confidence 44455444444444443333332 67777777777665322223334444667777777999999999999998877654
Q ss_pred hhHHHHHHHHHHHH
Q psy5288 115 FIMVAKHHENIAEI 128 (186)
Q Consensus 115 ~~~~a~~~~~lg~~ 128 (186)
..+--.+|.++-.|
T Consensus 332 ~reDeEIYKEf~eI 345 (472)
T 3re2_A 332 SKDDEEMYKEFHEI 345 (472)
T ss_dssp CGGGHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 33333444444433
No 286
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=64.22 E-value=33 Score=24.75 Aligned_cols=59 Identities=12% Similarity=0.026 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccC
Q psy5288 115 FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDH 175 (186)
Q Consensus 115 ~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~ 175 (186)
..+...+..-+|.++-.+ ++|.+|-+++.+|...++... ......++.-+--+-..+|+
T Consensus 10 ~~q~v~Y~YYlGr~~~~~-~~y~~A~~~L~~A~~~~~~~~-~~~k~~IL~yLIp~~Ll~G~ 68 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFD-SDFKQAEEYLSFAFEHCHRSS-QKNKRMILIYLLPVKMLLGH 68 (203)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHCCHhH-HHHHHHHHHHHHHHHHHcCC
Confidence 356677888899999997 999999999999999977643 22223344444333333444
No 287
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=62.45 E-value=47 Score=24.96 Aligned_cols=73 Identities=18% Similarity=0.089 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHH-cC-ChhHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5288 77 HDAGLCFVDAANCYKKS-----------NPAEAIKAIERAVEIHTD-MG-RFIMVAKHHENIAEIYEKELEDQEKAIDHY 143 (186)
Q Consensus 77 ~~aa~~~~~a~~~y~~~-----------~~~~A~~~~~~Al~i~~~-~~-~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y 143 (186)
+....++.--|..|+-+ -.+.|..+|++|.++... +. .++..-....+.+..|..-++++++|+..-
T Consensus 118 eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lA 197 (248)
T 3uzd_A 118 ESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLA 197 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred hHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444468888653 136889999999999863 43 334333444444544444479999999987
Q ss_pred HHHHHH
Q psy5288 144 QHAADC 149 (186)
Q Consensus 144 ~kA~~l 149 (186)
++|.+-
T Consensus 198 k~Afd~ 203 (248)
T 3uzd_A 198 KTAFDD 203 (248)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 288
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=62.17 E-value=49 Score=25.05 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHH-cC-ChhHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy5288 75 NKHDAGLCFVDAANCYKKS-----------NPAEAIKAIERAVEIHTD-MG-RFIMVAKHHENIAEIYEKELEDQEKAID 141 (186)
Q Consensus 75 ~~~~aa~~~~~a~~~y~~~-----------~~~~A~~~~~~Al~i~~~-~~-~~~~~a~~~~~lg~~y~~~lg~~~~Ai~ 141 (186)
+++....++.--|..|+-+ -.+.|..+|++|.++... +. .++..-....+.+..|..-++++++|+.
T Consensus 120 ~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~ 199 (260)
T 1o9d_A 120 SGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACN 199 (260)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred CchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 3444444444458887653 136889999999999863 43 3343333444444444444699999998
Q ss_pred HHHHHHHH
Q psy5288 142 HYQHAADC 149 (186)
Q Consensus 142 ~y~kA~~l 149 (186)
.-++|.+-
T Consensus 200 lAk~Afd~ 207 (260)
T 1o9d_A 200 LAKQAFDE 207 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87766654
No 289
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=62.12 E-value=49 Score=25.06 Aligned_cols=76 Identities=13% Similarity=0.098 Sum_probs=47.5
Q ss_pred CChhHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHH-cC-ChhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy5288 74 NNKHDAGLCFVDAANCYKKS-----------NPAEAIKAIERAVEIHTD-MG-RFIMVAKHHENIAEIYEKELEDQEKAI 140 (186)
Q Consensus 74 ~~~~~aa~~~~~a~~~y~~~-----------~~~~A~~~~~~Al~i~~~-~~-~~~~~a~~~~~lg~~y~~~lg~~~~Ai 140 (186)
.+++....++.--|..|+-+ -.+.|..+|++|.++... +. ..+..-....+.+..|..-++++++|+
T Consensus 140 ~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac 219 (261)
T 3ubw_A 140 NTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRAC 219 (261)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34444444444468887653 136789999999999753 43 233333344444444444469999999
Q ss_pred HHHHHHHHH
Q psy5288 141 DHYQHAADC 149 (186)
Q Consensus 141 ~~y~kA~~l 149 (186)
..-++|.+-
T Consensus 220 ~LAk~AFd~ 228 (261)
T 3ubw_A 220 RLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 987777664
No 290
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=61.39 E-value=30 Score=30.48 Aligned_cols=48 Identities=21% Similarity=0.150 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5288 92 KSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146 (186)
Q Consensus 92 ~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA 146 (186)
+.+++-|+.+.++|+.+.... -.++..|+.+|.. +|+|+.|+-.++..
T Consensus 350 K~~~elAL~~Ak~AV~~aPse------F~tW~~La~vYi~-l~d~e~ALLtLNSc 397 (754)
T 4gns_B 350 RGDYELALGVSNTSTELALDS------FESWYNLARCHIK-KEEYEKALFAINSM 397 (754)
T ss_dssp TTCHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHhcCchh------hHHHHHHHHHHHH-hccHHHHHHHHhcC
Confidence 448999999999998876554 4489999999999 59999999776544
No 291
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=61.04 E-value=37 Score=25.84 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=46.0
Q ss_pred HHHHH-HHHHHhcC-C----------HHHHHHHHHHHHHHHH-Hc---CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy5288 81 LCFVD-AANCYKKS-N----------PAEAIKAIERAVEIHT-DM---GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQ 144 (186)
Q Consensus 81 ~~~~~-a~~~y~~~-~----------~~~A~~~~~~Al~i~~-~~---~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~ 144 (186)
..|.+ -|+.|+-+ + .+.|..+|++|.++.. .+ ...+-.-....+.+..|..-++++++|+..-+
T Consensus 142 VFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk 221 (268)
T 3efz_A 142 AFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFAN 221 (268)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444 48888653 1 3688999999999985 34 22333333444455555544799999999999
Q ss_pred HHHHH
Q psy5288 145 HAADC 149 (186)
Q Consensus 145 kA~~l 149 (186)
+|.+-
T Consensus 222 ~AFde 226 (268)
T 3efz_A 222 RAIQA 226 (268)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98875
No 292
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=59.71 E-value=48 Score=27.25 Aligned_cols=70 Identities=10% Similarity=-0.030 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q psy5288 59 GGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEI 128 (186)
Q Consensus 59 A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~ 128 (186)
++..|.++....++.=.-...-.+-...|..|+..++.+|+++|-.|.++...-+-..+--.+|.++=.|
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 367 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 367 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 5666666666655422222223333456667777799999999999999887766444444444444333
No 293
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=58.88 E-value=70 Score=25.75 Aligned_cols=85 Identities=7% Similarity=0.087 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCChh--HHHHHHHHHHHHHHHhcCCHHHHHHHHH------HHHHHH---------------------
Q psy5288 100 KAIERAVEIHTDMGRFI--MVAKHHENIAEIYEKELEDQEKAIDHYQ------HAADCY--------------------- 150 (186)
Q Consensus 100 ~~~~~Al~i~~~~~~~~--~~a~~~~~lg~~y~~~lg~~~~Ai~~y~------kA~~l~--------------------- 150 (186)
..|+.++-+.....+.+ .....+..||.-+... |+...|.-+|- +.+.++
T Consensus 227 ~~WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~-g~~~~A~lCYi~Ag~~dk~v~iW~~~~~~~~~~~~~~~~s~~~~ 305 (399)
T 2pm7_A 227 SQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKEN-GHRQDSLTLYLAAGSLDKVASIWLSEFPDLEDKLKKDNKTIYEA 305 (399)
T ss_dssp GGHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHTCHHHHHHHHHHSHHHHHHHHHHTTCCHHHH
T ss_pred hhHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhC-CChhhhhHHHHhhCCHHHHHHHHHHhcchhhhccccccCCcccc
Confidence 46666766666665555 6666667777776664 66666655552 222222
Q ss_pred ---------------hcc-----C-ChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 151 ---------------AGE-----E-NKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 151 ---------------~~~-----~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+.. + ........+...|.++...|+.+.|++|++.
T Consensus 306 ~~~~Lqe~iEkv~vl~~a~~~~~~~~~~~l~~~~~eYA~lLA~qG~l~~A~~yL~~ 361 (399)
T 2pm7_A 306 HSECMTEFIERFTVFSNFINGSSTINNEQLIAKFLEFINLTTSTGNFELATEFLNS 361 (399)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC---CCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 110 0 1122334667778888899999999999864
No 294
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=57.78 E-value=5 Score=24.60 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 162 CLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 162 ~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
-..++|.=|..+|+|+.|+.+|+.
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g 37 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQG 37 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHH
Confidence 346788889999999999999974
No 295
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=56.64 E-value=62 Score=24.48 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy5288 75 NKHDAGLCFVDAANCYKKS-----------NPAEAIKAIERAVEIHTDMG-RFIMVAKHHENIAEIYEKELEDQEKAIDH 142 (186)
Q Consensus 75 ~~~~aa~~~~~a~~~y~~~-----------~~~~A~~~~~~Al~i~~~~~-~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~ 142 (186)
+++....++.--|..|+-. -.+.|..+|++|.++...+. .++..-....+.+..|..-+++.++|+..
T Consensus 141 ~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~l 220 (260)
T 2npm_A 141 SPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDM 220 (260)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred chHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444444458777653 13578999999999983233 23333334444444444447999999998
Q ss_pred HHHHHHHH
Q psy5288 143 YQHAADCY 150 (186)
Q Consensus 143 y~kA~~l~ 150 (186)
-++|.+-.
T Consensus 221 Ak~Afd~A 228 (260)
T 2npm_A 221 AKEAFEMA 228 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777643
No 296
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.46 E-value=20 Score=23.71 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHHHHHHh
Q psy5288 134 EDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 134 g~~~~Ai~~y~kA~~l~~ 151 (186)
|+.+.|+++|.+.+.-+.
T Consensus 36 g~k~~Al~lYk~GI~eLe 53 (116)
T 2dl1_A 36 GQKEEAKNYYKQGIGHLL 53 (116)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 555555555555554443
No 297
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=54.04 E-value=74 Score=24.58 Aligned_cols=134 Identities=9% Similarity=-0.015 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHH
Q psy5288 37 DEAIDLYVRAGNLFKLGKK---WNDGGNAFLQAGTLHLK-NNNKHDAGLCFVDAANCYKKS---NPAEAIKAIERAVEIH 109 (186)
Q Consensus 37 ~~A~~~y~~ag~~~~~~g~---~~~A~~~y~~a~~~~~~-~~~~~~aa~~~~~a~~~y~~~---~~~~A~~~~~~Al~i~ 109 (186)
+-+..+|.+++.+-...|- -+=|-++|.+|..+|.. +.+......+..-+.....+. ..+.--..--++....
T Consensus 96 elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~a 175 (298)
T 2r17_C 96 ELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAA 175 (298)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHH
Confidence 4455555555555444444 34445555556665554 444444333333333333322 1111111111111111
Q ss_pred HHcCChhHHHHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Q psy5288 110 TDMGRFIMVAKHHENIAEIYEK---------ELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYS 170 (186)
Q Consensus 110 ~~~~~~~~~a~~~~~lg~~y~~---------~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y 170 (186)
.++=..+.....-...+.++.. ...+.++.+++++||+.+....-++......++.+-+-|
T Consensus 176 skLLKK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d~~~~v~LfveILn~y 245 (298)
T 2r17_C 176 SKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRY 245 (298)
T ss_dssp HTCSSHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHH
Confidence 2222223334444455555542 014788999999999999876544444445555555544
No 298
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=53.38 E-value=30 Score=20.79 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=16.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLH 70 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~ 70 (186)
|..+...|++++|+.+|-+|+.++
T Consensus 24 GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 24 GEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHc
Confidence 666666677777777777776664
No 299
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=52.05 E-value=39 Score=31.13 Aligned_cols=66 Identities=3% Similarity=-0.218 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 117 MVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 117 ~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
..-..++.+=..|-.. |+.++|...+.+..+.-.+.-.+ . ..+|+-|-.-|.+.|+.++|.++|++
T Consensus 125 ~~~~TynaLIdglcK~-G~leeA~~Lf~eM~~m~~kG~~P-d-vvTYNtLI~Glck~G~~~eA~~Lf~e 190 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLT-DQLPLAHHLLVVHHGQRQKRKLL-T-LDMYNAVMLGWARQGAFKELVYVLFM 190 (1134)
T ss_dssp HHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHSHHHHTTC-C-HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhhcCCCC-C-HhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3344567777777774 99999999997755432211111 1 36888889999999999999999976
No 300
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=50.78 E-value=35 Score=23.33 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q psy5288 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 118 ~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~ 151 (186)
.|..+.+.|.+|... |+.+.|.-.|.+...++-
T Consensus 39 ta~~llr~A~~y~~e-gd~e~AYily~R~~~L~~ 71 (146)
T 2xze_A 39 SGVEIIRMASIYSEE-GNIEHAFILYNKYITLFI 71 (146)
T ss_dssp HHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHH
Confidence 345566678888886 999999999999888874
No 301
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=50.32 E-value=1.1e+02 Score=25.53 Aligned_cols=49 Identities=16% Similarity=-0.011 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHcCChhH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy5288 56 WNDGGNAFLQAGTLHLKNNNKHD--AGLCFVDAANCYKKSNPAEAIKAIERAVEIH 109 (186)
Q Consensus 56 ~~~A~~~y~~a~~~~~~~~~~~~--aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~ 109 (186)
-++|++||++|++.++++..... ....|.+++.. ++.|-.+|.+|.+..
T Consensus 448 A~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~-----yE~aGDyy~~AA~k~ 498 (526)
T 2wb7_A 448 AQGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKK-----HEMAGDYYVNAARKA 498 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhh-----hhhccHHHHHHHHHH
Confidence 45777777777777776553332 22333344443 345555666665544
No 302
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=47.96 E-value=1.6e+02 Score=26.73 Aligned_cols=25 Identities=8% Similarity=-0.044 Sum_probs=19.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHH
Q psy5288 47 GNLFKLGKKWNDGGNAFLQAGTLHL 71 (186)
Q Consensus 47 g~~~~~~g~~~~A~~~y~~a~~~~~ 71 (186)
..+|..+|+|++|+.+-..|++++.
T Consensus 77 Skvyy~Lg~~~~al~yaL~aG~~fd 101 (963)
T 4ady_A 77 SKVYYNLGEYESAVKYALAAKDRFD 101 (963)
T ss_dssp HHHHHHHTCHHHHHHHHHHHGGGSC
T ss_pred HHHheeccchHHHHHHHHhCCCcCC
Confidence 4578888888888888877777664
No 303
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=47.95 E-value=55 Score=22.32 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=41.4
Q ss_pred HHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy5288 5 EQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHL 71 (186)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~ 71 (186)
.....+|-+.|...--++.-+ + ..|-..+.-..+.+.+|..-|+++.|.-.|.+...+..
T Consensus 12 ~~~i~~L~~~A~~~~v~~~i~-----l--~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~ 71 (146)
T 2xze_A 12 EDRVRALSQLGSAVEVNEDIP-----P--RRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFI 71 (146)
T ss_dssp HHHHHHHHHHHTCCCCCTTSC-----H--HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHhhccCCCCCC-----H--HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 356666766664443322111 1 25677777777778889999999999999999888874
No 304
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=45.01 E-value=1.5e+02 Score=25.58 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=19.0
Q ss_pred HHHHHHHHHH--HhccCHHHHHHHHHhC
Q psy5288 161 KCLIKIANYS--ALTDHLDKAIKLYEQL 186 (186)
Q Consensus 161 ~~~~~la~~y--~~~g~~~~A~~~~~~~ 186 (186)
..+.++..++ ...|+|+.|++..+++
T Consensus 537 ~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 537 MLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3455666665 6689999999988764
No 305
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=44.86 E-value=46 Score=24.61 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhccCChHHHHHHHHHHH--HHHHhccCHHHHHHHHHh
Q psy5288 136 QEKAIDHYQHAADCYAGEENKSSANKCLIKIA--NYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 136 ~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la--~~y~~~g~~~~A~~~~~~ 185 (186)
.+.|+..++..-+-..-.+.......-++++. .|+++.|.|++|.+++++
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr 139 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKK 139 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 45555555544433321111222233333333 456789999999999986
No 306
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=43.96 E-value=57 Score=20.37 Aligned_cols=28 Identities=11% Similarity=-0.027 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHc--CChhHHHHHH
Q psy5288 56 WNDGGNAFLQAGTLHLKN--NNKHDAGLCF 83 (186)
Q Consensus 56 ~~~A~~~y~~a~~~~~~~--~~~~~aa~~~ 83 (186)
+++|.++..+++.+-... |++..|...|
T Consensus 13 h~~AF~~Is~aL~~DE~~~~G~k~~A~~~Y 42 (89)
T 3eab_A 13 HKQAFEYISIALRIDEDEKAGQKEQAVEWY 42 (89)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSSGGGSHHHH
T ss_pred HHHHHHHHHHHHHhhhcccCCCHHHHHHHH
Confidence 555666666666655542 5555555555
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.32 E-value=1.9e+02 Score=25.97 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy5288 42 LYVRAGNLFKLGKKWNDGGNAFLQAGT 68 (186)
Q Consensus 42 ~y~~ag~~~~~~g~~~~A~~~y~~a~~ 68 (186)
.|. .|.+|...|++++|.++|++|+.
T Consensus 843 ~yv-~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 843 VYL-KALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHH-HHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHH-HHHHHHHcCCHHHHHHHHHHHhh
Confidence 354 47889999999999999998874
No 308
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=40.72 E-value=51 Score=27.00 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 136 QEKAIDHYQHAADCYAGEE--NKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 136 ~~~Ai~~y~kA~~l~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
|+..+.-++.|....+... -+.....++--+|.+|...++|++|+++.++|
T Consensus 154 y~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~v 206 (481)
T 3jq1_A 154 WAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPL 206 (481)
T ss_dssp HHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555666666655321 12222346677899999999999999998764
No 309
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=40.44 E-value=85 Score=21.38 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC
Q psy5288 119 AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE 154 (186)
Q Consensus 119 a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~ 154 (186)
|..+...|.+|... |+.++|.-+|.+-+.++....
T Consensus 42 a~~L~r~A~~y~~E-Gd~E~AYilymRy~~L~~kIp 76 (144)
T 2a9u_A 42 ALKIFKTAEECRLD-RDEERAYVLYMKYVTVYNLIK 76 (144)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHh
Confidence 34455567777776 788888888777777765443
No 310
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=39.94 E-value=52 Score=26.85 Aligned_cols=28 Identities=21% Similarity=0.043 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 159 ANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 159 ~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
...++--+|.+|...|+|++|+++.++|
T Consensus 190 k~aA~aLlARvyL~~~~~~~A~~~a~~v 217 (460)
T 3snx_A 190 TDVVNGLMARAYLLTGQWGEAAKAAEAA 217 (460)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3457778899999999999999987653
No 311
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=39.72 E-value=46 Score=27.02 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhccC--ChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 136 QEKAIDHYQHAADCYAGEE--NKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 136 ~~~Ai~~y~kA~~l~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
|+..+.-++.|..+.+... -+.....++--+|.+|...|+|++|+++.++|
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~v 216 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQL 216 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4455555666666655321 12233356778899999999999999987653
No 312
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=39.60 E-value=71 Score=20.18 Aligned_cols=46 Identities=7% Similarity=0.150 Sum_probs=28.9
Q ss_pred CHHHHHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy5288 35 KTDEAIDLYVR---AGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCF 83 (186)
Q Consensus 35 ~~~~A~~~y~~---ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~ 83 (186)
+.++--.+|.+ .|..+...|+++.|+.+|-+|+.++ ++|..-...|
T Consensus 12 d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc---~qP~~LL~i~ 60 (95)
T 1om2_A 12 DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVC---GQPQQLLQVL 60 (95)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---SCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHc---CCHHHHHHHH
Confidence 44444444443 3777778888888888888888876 3444434333
No 313
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=39.06 E-value=1.3e+02 Score=24.77 Aligned_cols=78 Identities=12% Similarity=0.002 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMG 113 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~~~~~A~~~~~~Al~i~~~~~ 113 (186)
+|.-|+..+-..-.+...-|+ +.++..|.+|..+.++.=.-...-.+-...|..|+..++.+|+++|-.|..+...-+
T Consensus 260 ~YPmALgnLgDLEei~pt~gr-p~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~Yn 337 (489)
T 4gq4_A 260 RYPMALGNLADLEELEPTPGR-PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYN 337 (489)
T ss_dssp TCHHHHHHHHHHHHHSCCTTS-CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred hcchhhhcccCHhhcCCCCCC-CCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcc
Confidence 445555444444444333333 235667777777666432222233334457777788899999999999988876554
No 314
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=38.78 E-value=1.3e+02 Score=24.12 Aligned_cols=30 Identities=7% Similarity=-0.003 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5288 115 FIMVAKHHENIAEIYEKELEDQEKAIDHYQH 145 (186)
Q Consensus 115 ~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~k 145 (186)
.......+...|.++..+ |+.+.|..+++-
T Consensus 332 ~~~l~~~~~eYA~lLA~q-G~l~~A~~yL~~ 361 (399)
T 2pm7_A 332 NEQLIAKFLEFINLTTST-GNFELATEFLNS 361 (399)
T ss_dssp CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhC-CCHHHHHHHHHh
Confidence 355777888999999997 999999999863
No 315
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=37.00 E-value=53 Score=27.00 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhcc-----CChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 136 QEKAIDHYQHAADCYAGE-----ENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 136 ~~~Ai~~y~kA~~l~~~~-----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
|+..+.-++.|..+.+.. .-+.....++--+|.+|...|+|++|+++.++|
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~v 229 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKL 229 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444555566666666431 112233456777899999999999999987753
No 316
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=36.84 E-value=1e+02 Score=21.31 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=31.1
Q ss_pred HHHHH-cCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy5288 107 EIHTD-MGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAAD 148 (186)
Q Consensus 107 ~i~~~-~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~ 148 (186)
+++.+ +++..--+..+.++|..|.. +|+.-+|-+...+|-+
T Consensus 112 ki~~~~l~n~~~~~~~l~kia~Ay~K-lg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 112 EIGREILKNNEVSASILVAIANALRR-VGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHC--CCSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHH-hcchhhHHHHHHHHHH
Confidence 44555 35444446788999999999 7999999999999876
No 317
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=35.70 E-value=73 Score=22.08 Aligned_cols=126 Identities=10% Similarity=-0.016 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS---NPAEAIKAIERAVEIHT 110 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~---~~~~A~~~~~~Al~i~~ 110 (186)
|..++..+.-.+...- ...+++-+.--..++.. +=+.....+..+|.+|.-. +...-+.||-+
T Consensus 21 G~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a----~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~------ 86 (172)
T 1wy6_A 21 GYIDEGVKIVLEITKS----STKSEYNWFICNLLESI----DCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVI------ 86 (172)
T ss_dssp TCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHC----CHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHH------
T ss_pred hhHHHHHHHHHHHcCC----CCccccceeeeecchhh----chhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHH------
Confidence 3667777777665432 23444444433332221 2233345566677776532 55555555533
Q ss_pred HcCChhHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 111 DMGRFIMVAKHHENIAEIY-EKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 111 ~~~~~~~~a~~~~~lg~~y-~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
.|... -++.+|.-+ ..+ |+-|+--+.+...+. ++ +. .+..+..+|..|.+.|+-.+|-+++.+
T Consensus 87 -~n~~s----e~vd~ALd~lv~~-~KkDqLdki~~~~l~---n~--~~-~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 87 -NNTLN----EHVNKALDILVIQ-GKRDKLEEIGREILK---NN--EV-SASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp -TTCCC----HHHHHHHHHHHHT-TCHHHHHHHHHHHC-----C--CS-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -hcchH----HHHHHHHHHHHHh-ccHhHHHHHHHHHhc---cC--CC-ChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 22111 123333322 233 555554444333211 11 11 136889999999999999999888764
No 318
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=35.19 E-value=54 Score=26.65 Aligned_cols=51 Identities=10% Similarity=0.219 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 136 QEKAIDHYQHAADCYAGE--ENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 136 ~~~Ai~~y~kA~~l~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
|+..+.-++.|..+.+.. .-+.....++--+|.+|...|+|++|+++.++|
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~v 222 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENA 222 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344555566666665532 112333456777899999999999999987653
No 319
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=34.87 E-value=60 Score=26.49 Aligned_cols=30 Identities=10% Similarity=-0.002 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 157 SSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 157 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
.....++--+|.+|...|+|++|+++.++|
T Consensus 194 ~tk~aA~allarvyL~~~~~~~A~~~a~~v 223 (478)
T 3hdx_A 194 FNKLSAYSVLAHICAWQGNYAEAETYSAFI 223 (478)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334457778899999999999999988753
No 320
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.36 E-value=51 Score=22.74 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 139 AIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 139 Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+.+.|.-...- ..|.. -+..|...|..+...|++++|-++|+.
T Consensus 84 p~~if~~L~~~--~IG~~--~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 126 (152)
T 4a1g_A 84 LHQFFEFLYNH--GIGTL--SSPLYIAWAGHLEAQGELQHASAVLQR 126 (152)
T ss_dssp HHHHHHHHHTT--TTTTT--BHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555544332 23332 236889999999999999999999974
No 321
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=33.29 E-value=2e+02 Score=23.54 Aligned_cols=38 Identities=8% Similarity=0.004 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-Hhcc
Q psy5288 115 FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADC-YAGE 153 (186)
Q Consensus 115 ~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l-~~~~ 153 (186)
..+...++.-+|+++-.+ ++|.+|-+++..|... ++..
T Consensus 216 ~~q~v~Y~YYlGr~~~~~-~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 216 LDQQIEYRYLLGRYYLLN-SQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHCC
T ss_pred ccceEeeeHHHHHHHHHH-ccHHHHHHHHHHHHHhcCCcc
Confidence 357888999999999997 9999999999999998 7753
No 322
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=32.67 E-value=9.3 Score=28.99 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy5288 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 34 ~~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~ 72 (186)
|....|+++..+| .-....|+|++|+.+|..+++++..
T Consensus 18 p~~~~Ai~lv~~A-Ve~D~~g~y~eAl~lY~eaIe~Ll~ 55 (257)
T 2ymb_A 18 PQSTAAATVLKRA-VELDSESRYPQALVCYQEGIDLLLQ 55 (257)
T ss_dssp ---------------------------------------
T ss_pred hhHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4555566665554 4567788899999999888887654
No 323
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=32.61 E-value=56 Score=26.65 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 136 QEKAIDHYQHAADCYAGE--ENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 136 ~~~Ai~~y~kA~~l~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
|+..+.-++.|..+.+.. .-+.....++--+|.+|...|+|++|+++.++|
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~v 228 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDV 228 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 445555566676666532 112333457778899999999999999987653
No 324
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=32.60 E-value=9.3 Score=28.98 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy5288 124 NIAEIYEKELEDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 124 ~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~ 152 (186)
.-|.-..+. |+|++|+.+|++|++++-.
T Consensus 28 ~~AVe~D~~-g~y~eAl~lY~eaIe~Ll~ 55 (257)
T 2ymb_A 28 KRAVELDSE-SRYPQALVCYQEGIDLLLQ 55 (257)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 333344554 8899999999888888664
No 325
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=32.42 E-value=1.8e+02 Score=22.89 Aligned_cols=17 Identities=6% Similarity=-0.044 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5288 56 WNDGGNAFLQAGTLHLK 72 (186)
Q Consensus 56 ~~~A~~~y~~a~~~~~~ 72 (186)
...|..+|++|+-++.-
T Consensus 142 lK~A~~~fq~AAG~f~~ 158 (376)
T 3r9m_A 142 AKEVHRSLKIAAGIFKH 158 (376)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67888888888888763
No 326
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.72 E-value=1.1e+02 Score=20.07 Aligned_cols=27 Identities=7% Similarity=-0.058 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy5288 56 WNDGGNAFLQAGTLHLKNNNKHDAGLCF 83 (186)
Q Consensus 56 ~~~A~~~y~~a~~~~~~~~~~~~aa~~~ 83 (186)
+++|.++..+++.+-.. |+++.|...|
T Consensus 19 h~~AF~~Is~AL~~DE~-g~k~~Al~lY 45 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDEL-GQKEEAKNYY 45 (116)
T ss_dssp HHHHHHHHHHHHHHHHH-TCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhc-CCHHHHHHHH
Confidence 44555555555555442 4444444444
No 327
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=31.49 E-value=1.2e+02 Score=20.56 Aligned_cols=41 Identities=5% Similarity=-0.083 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNN 75 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a~~~~~~~~~ 75 (186)
.|-.++.-..+.+.+|..-||.+.|--.|.+-+.++.++..
T Consensus 37 ~y~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kIpk 77 (144)
T 2a9u_A 37 SYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKK 77 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 46666666667778888899999999988888888766543
No 328
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=30.98 E-value=1.6e+02 Score=21.81 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=47.7
Q ss_pred HHcCChhHHHHHHHHHHHHHHHh----cCC-----HHHHHHHHHHHHHHHhcc---CChHHHHHHHHHHHHHHH-hccCH
Q psy5288 110 TDMGRFIMVAKHHENIAEIYEKE----LED-----QEKAIDHYQHAADCYAGE---ENKSSANKCLIKIANYSA-LTDHL 176 (186)
Q Consensus 110 ~~~~~~~~~a~~~~~lg~~y~~~----lg~-----~~~Ai~~y~kA~~l~~~~---~~~~~~~~~~~~la~~y~-~~g~~ 176 (186)
+...+......++-..|..|... .|+ .+.|...|++|.++.... .+|... ....|.+..|. -+++.
T Consensus 114 p~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirL-GLaLNfSVFyyEiln~~ 192 (236)
T 3iqu_A 114 KEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRL-GLALNFSVFHYEIANSP 192 (236)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHH-HHHHHHHHHHHHTSSCH
T ss_pred ccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHH-HHHHHHHHHHHHHcCCH
Confidence 34455555556667778887641 122 578889999999987642 244443 45566666665 47999
Q ss_pred HHHHHHHH
Q psy5288 177 DKAIKLYE 184 (186)
Q Consensus 177 ~~A~~~~~ 184 (186)
++|++.-+
T Consensus 193 ~~Ac~lAk 200 (236)
T 3iqu_A 193 EEAISLAK 200 (236)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887643
No 329
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=30.86 E-value=2.1e+02 Score=23.08 Aligned_cols=106 Identities=8% Similarity=-0.046 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHH
Q psy5288 61 NAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS---NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQE 137 (186)
Q Consensus 61 ~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~---~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~ 137 (186)
+.-++.+=++-..|....=--++-++|++=.-. .-..++..|.+|+...+.--+-..+--+...-| .+... +++-
T Consensus 236 ~LQq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgG-y~yR~-~~~r 313 (472)
T 3re2_A 236 QLQQELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGG-YYYRK-KKYY 313 (472)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHH-HHHHT-TCHH
T ss_pred HHHHHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhh-hhhhc-chHH
Confidence 333455555444444333223344555553322 223477777777777665522222222333344 44444 8999
Q ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q psy5288 138 KAIDHYQHAADCYAGEENKSSANKCLIKIAN 168 (186)
Q Consensus 138 ~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~ 168 (186)
+|+.++-+|.+..+.-+....-..+|..+-+
T Consensus 314 eAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~e 344 (472)
T 3re2_A 314 EAIASWVDAGYVAGKYNYSKDDEEMYKEFHE 344 (472)
T ss_dssp HHHHHHHHHHHHHTTSCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Confidence 9999999999887764322222244444333
No 330
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=30.69 E-value=62 Score=22.59 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 160 NKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 160 ~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
+..|...|.++...|++.+|-++|+.
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~ 121 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQE 121 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36889999999999999999999974
No 331
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=28.97 E-value=2.4e+02 Score=23.14 Aligned_cols=90 Identities=6% Similarity=-0.045 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHH
Q psy5288 61 NAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS---NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQE 137 (186)
Q Consensus 61 ~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~~~---~~~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~ 137 (186)
..-++.+-+....|....=--++.++|++=.-. .-+.++..|++|+.+.+..-+-...--+...-|-.|. . +++.
T Consensus 243 ~lQq~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R-~-~~~~ 320 (489)
T 4gq4_A 243 QLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCR-N-RNVR 320 (489)
T ss_dssp HHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH-T-TCHH
T ss_pred HHHHHHHHHHHhccchhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHH-h-hhHH
Confidence 333444444444443322223344455543322 2235667888888776655222222223333444444 4 8999
Q ss_pred HHHHHHHHHHHHHhc
Q psy5288 138 KAIDHYQHAADCYAG 152 (186)
Q Consensus 138 ~Ai~~y~kA~~l~~~ 152 (186)
+|+.++-+|......
T Consensus 321 eAl~~wa~aa~Vi~~ 335 (489)
T 4gq4_A 321 EALQAWADTATVIQD 335 (489)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhhhhhhh
Confidence 999999999888775
No 332
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.88 E-value=2.2e+02 Score=22.56 Aligned_cols=102 Identities=7% Similarity=-0.019 Sum_probs=70.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCh-
Q psy5288 49 LFKLGKKWNDGGNAFLQAGTLHLKN-----------NNKHDAGLCFVDAANCYKKS-NPAEAIKAIERAVEIHTDMGRF- 115 (186)
Q Consensus 49 ~~~~~g~~~~A~~~y~~a~~~~~~~-----------~~~~~aa~~~~~a~~~y~~~-~~~~A~~~~~~Al~i~~~~~~~- 115 (186)
+.....++++|+++..+......+. ...+....+...++.+|... +.+.|....+++-.+....++.
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 4555667888888776654332210 11123344555677888765 8999999999998888777643
Q ss_pred -hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q psy5288 116 -IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYA 151 (186)
Q Consensus 116 -~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~ 151 (186)
...+.++.-.+..|... +++..+....-..+..+.
T Consensus 165 ~~v~~~~y~~~~~~~~~~-~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFK-NDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp SHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhcc
Confidence 46677788888888886 999988887777777655
No 333
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=27.46 E-value=1.2e+02 Score=19.06 Aligned_cols=20 Identities=15% Similarity=0.039 Sum_probs=10.8
Q ss_pred HHhcCCHHHHHHHHHHHHHH
Q psy5288 50 FKLGKKWNDGGNAFLQAGTL 69 (186)
Q Consensus 50 ~~~~g~~~~A~~~y~~a~~~ 69 (186)
+.+.++|.+|.-.|.++..+
T Consensus 63 ~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 63 LFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcchhHHHHHHHHHHcc
Confidence 33455566666666555543
No 334
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=26.81 E-value=89 Score=19.32 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHH
Q psy5288 161 KCLIKIANYSALTDHLDKAIKLY 183 (186)
Q Consensus 161 ~~~~~la~~y~~~g~~~~A~~~~ 183 (186)
..|.+=|.-|.+.||+..|+..+
T Consensus 36 ~~Y~~Da~~fl~kGD~v~Ala~i 58 (86)
T 2oo2_A 36 EAYISDSRYFLEKGDLVRAFECV 58 (86)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 44555566777788888887765
No 335
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.79 E-value=75 Score=23.43 Aligned_cols=122 Identities=9% Similarity=0.023 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHh-cC-CH-HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHh
Q psy5288 56 WNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYK-KS-NP-AEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKE 132 (186)
Q Consensus 56 ~~~A~~~y~~a~~~~~~~~~~~~aa~~~~~a~~~y~-~~-~~-~~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~ 132 (186)
.......|+..+.-+...+||-..=.-|.+...-.. .. .. ..-...+++++..+.....+..=. -+.++=..|.+.
T Consensus 51 l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~-RyLklWl~Ya~~ 129 (223)
T 4aez_C 51 LQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDV-RYLRIWMQYVNY 129 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCH-HHHHHHHHHHHc
Confidence 334445555555554455677555444444332221 11 11 123456667766665553211000 233444444442
Q ss_pred cCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Q psy5288 133 LEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185 (186)
Q Consensus 133 lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 185 (186)
-+.+...|.-...- ..|.. -+..|...|..+...|+|.+|-++|+.
T Consensus 130 ---~~~p~~if~~L~~~--~IG~~--~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 175 (223)
T 4aez_C 130 ---IDEPVELFSFLAHH--HIGQE--SSIFYEEYANYFESRGLFQKADEVYQK 175 (223)
T ss_dssp ---CSCHHHHHHHHHHT--TCSTT--BHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHC--Ccchh--HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 23445555544332 23432 236889999999999999999999975
No 336
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=26.51 E-value=1.1e+02 Score=20.39 Aligned_cols=39 Identities=15% Similarity=0.027 Sum_probs=23.5
Q ss_pred chHHhHHHHHHHHHHhhccCCCCccccccCCCCHHHHHHHHHHH
Q psy5288 3 DNEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA 46 (186)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~A~~~y~~a 46 (186)
.|.+++++.+.+|++-+.... + .+.+|+|+.|+-.-.++
T Consensus 4 ~~~ee~~~wl~~A~~dl~~A~--~---~~~~g~y~~a~F~aqQA 42 (141)
T 3o10_A 4 GNPVEARRWLRQARANFSAAR--N---DLHKNANEWVCFKCYLS 42 (141)
T ss_dssp CCHHHHHHHHHHHHHHHHHHG--G---GTTTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhhhhHHh--h---HHhhCccceEeeehhHH
Confidence 356788888888877777211 1 23556776665554444
No 337
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=26.37 E-value=1.1e+02 Score=20.94 Aligned_cols=34 Identities=12% Similarity=-0.047 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy5288 115 FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADC 149 (186)
Q Consensus 115 ~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l 149 (186)
-...|..|..-|..++.. |++.+|-+.|+..+.-
T Consensus 97 G~~~AlfYe~wA~~lE~~-g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 97 GTLSSPLYIAWAGHLEAQ-GELQHASAVLQRGIQN 130 (152)
T ss_dssp TTTBHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc
Confidence 345677889999999996 9999999999999884
No 338
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=25.87 E-value=1.1e+02 Score=25.29 Aligned_cols=50 Identities=6% Similarity=0.177 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhcc-----CChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 137 EKAIDHYQHAADCYAGE-----ENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 137 ~~Ai~~y~kA~~l~~~~-----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
+..+.-++.|+...+.. .-+.....++--+|.+|...++|++|+++.++|
T Consensus 154 ~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~v 208 (517)
T 3qnk_A 154 DFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEV 208 (517)
T ss_dssp HHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555431 112233356777899999999999999988753
No 339
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=24.81 E-value=1.3e+02 Score=18.60 Aligned_cols=32 Identities=9% Similarity=-0.136 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5288 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQA 66 (186)
Q Consensus 35 ~~~~A~~~y~~ag~~~~~~g~~~~A~~~y~~a 66 (186)
++-+-+..|.+=|.-|...|++..|+.|+.=+
T Consensus 34 ~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa 65 (87)
T 2pmr_A 34 AVVERALNYRDDSVYYLEKGDHITSFGCITYA 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44445555566677788888888888877543
No 340
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=24.14 E-value=2.3e+02 Score=21.31 Aligned_cols=71 Identities=8% Similarity=0.015 Sum_probs=46.3
Q ss_pred HcCChhHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHHhcc---CChHHHHHHHHHHHHHHHh-ccCH
Q psy5288 111 DMGRFIMVAKHHENIAEIYEKELE----------DQEKAIDHYQHAADCYAGE---ENKSSANKCLIKIANYSAL-TDHL 176 (186)
Q Consensus 111 ~~~~~~~~a~~~~~lg~~y~~~lg----------~~~~Ai~~y~kA~~l~~~~---~~~~~~~~~~~~la~~y~~-~g~~ 176 (186)
...+......++-..|..|.. +- -.+.|...|++|.++. .. .+|... ....|.+..|.. +++.
T Consensus 138 ~a~~~EskVFY~KMKGDYyRY-laE~~~g~~r~~~~e~a~~aY~~A~~iA-~~L~pthPirL-GLaLNfSVFyYEiln~~ 214 (260)
T 2npm_A 138 TATSPDSKVFYFKMKGDYHRY-ISEFSTGDSKQSSAEDALKAYKDATVVA-KDLEPTHPIRL-GLALNFSVFHYEILNEP 214 (260)
T ss_dssp HCCSHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHH-TTSCTTCHHHH-HHHHHHHHHHHHTSCCH
T ss_pred CCCchHHHHHHHHHhccHHHH-HHHhcCchHHHHHHHHHHHHHHHHHHHH-HhCCCCCcHHH-HHHHHHHHHHHHHcCCH
Confidence 334555555666677777764 12 2468889999999998 42 233333 455666666655 8999
Q ss_pred HHHHHHHH
Q psy5288 177 DKAIKLYE 184 (186)
Q Consensus 177 ~~A~~~~~ 184 (186)
++|++.-+
T Consensus 215 ~~Ac~lAk 222 (260)
T 2npm_A 215 RAAIDMAK 222 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988654
No 341
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.21 E-value=1.4e+02 Score=20.78 Aligned_cols=37 Identities=27% Similarity=0.204 Sum_probs=30.5
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy5288 113 GRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCY 150 (186)
Q Consensus 113 ~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~ 150 (186)
|--...|..|..-|.+++.. |++.+|-+.|+.++.-.
T Consensus 90 ~IG~~~AlfY~~wA~~lE~~-~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 90 GIGVSLAQFYISWAEEYEAR-ENFRKADAIFQEGIQQK 126 (164)
T ss_dssp TSSTTBHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTT
T ss_pred CcchhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC
Confidence 33345677889999999996 99999999999998853
No 342
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=22.96 E-value=18 Score=29.45 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q psy5288 134 EDQEKAIDHYQHAADCYAG 152 (186)
Q Consensus 134 g~~~~Ai~~y~kA~~l~~~ 152 (186)
|+|++|+.+|.+|++++..
T Consensus 25 g~~~eA~~~Y~~a~~~l~~ 43 (444)
T 2zan_A 25 GNYEEALQLYQHAVQYFLH 43 (444)
T ss_dssp -------------------
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 8888888888888888664
No 343
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=21.06 E-value=1.3e+02 Score=24.90 Aligned_cols=50 Identities=12% Similarity=0.213 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhc-------cCChHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
Q psy5288 137 EKAIDHYQHAADCYAG-------EENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186 (186)
Q Consensus 137 ~~Ai~~y~kA~~l~~~-------~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~~ 186 (186)
+.-+.-++.|....+. ..-+.....++--+|.+|.-.+++++|+++.++|
T Consensus 168 ~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~v 224 (528)
T 3i4g_A 168 KWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDI 224 (528)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344445556555541 1112233356777899999999999999988753
No 344
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=20.92 E-value=3.5e+02 Score=22.26 Aligned_cols=68 Identities=4% Similarity=-0.007 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Q psy5288 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKI 166 (186)
Q Consensus 97 ~A~~~~~~Al~i~~~~~~~~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~l 166 (186)
.++..|.+|+...+.--+-..+--+...-| .|... +++-+|+.++-.|.+..+.-+....-..+|..+
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgG-y~yR~-~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf 364 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAG-YHCRN-RNVREALQAWADTATVIQDYNYCREDEEIYKEF 364 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHH-HHHHT-TCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecch-hhhhc-chHHHHHHHHHHHHHHHHHcCCCcchHHHHHHH
Confidence 466777777776655522222222334444 44444 899999999999999877643222223444433
No 345
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=20.91 E-value=1.6e+02 Score=21.33 Aligned_cols=33 Identities=12% Similarity=0.039 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy5288 116 IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADC 149 (186)
Q Consensus 116 ~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l 149 (186)
...|..|..-|..++.. |++.+|-..|+..+.-
T Consensus 112 ~~~AlfYe~wA~~lE~~-g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 112 TKLSLFYEEFSKLLENA-QFFLEAKVLLELGAEN 144 (202)
T ss_dssp TTBHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc
Confidence 35577899999999996 9999999999998884
No 346
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=20.45 E-value=2.5e+02 Score=20.28 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCCh---hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhccCH
Q psy5288 100 KAIERAVEIHTDMGRF---IMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHL 176 (186)
Q Consensus 100 ~~~~~Al~i~~~~~~~---~~~a~~~~~lg~~y~~~lg~~~~Ai~~y~kA~~l~~~~~~~~~~~~~~~~la~~y~~~g~~ 176 (186)
..+++++..+.....+ ..--.++...+.... . ++...+.+.|.-...- ..|... +..|...|..+...|++
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~-~-~~~~~p~~if~~L~~~--~IG~~~--AlfYe~wA~~lE~~g~~ 131 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLFL-S-NNFHESENTFKYMFNK--GIGTKL--SLFYEEFSKLLENAQFF 131 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHHH--TSSTTB--HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhhc-c-cccCCHHHHHHHHHHC--CCcHHH--HHHHHHHHHHHHHcCCH
Confidence 4667777766655321 223334555555442 1 4577888887766553 344332 36889999999999999
Q ss_pred HHHHHHHHh
Q psy5288 177 DKAIKLYEQ 185 (186)
Q Consensus 177 ~~A~~~~~~ 185 (186)
.+|-++|+.
T Consensus 132 ~~A~~Vy~~ 140 (202)
T 3esl_A 132 LEAKVLLEL 140 (202)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999975
Done!