RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5288
(186 letters)
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 147 bits (371), Expect = 4e-44
Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 4/182 (2%)
Query: 7 KARQLVAEAEKKISSSSKGFFSQFTGGN--KTDEAIDLYVRAGNLFKLGKKWNDGGNAFL 64
+L+ AEKK SS GF F+G + K +EA DL V+A +++L K+ N G++FL
Sbjct: 3 DPVELLKRAEKKGVPSS-GFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFL 61
Query: 65 QAGTLHLKNNNKHDAGLCFVDAANCYKKSN-PAEAIKAIERAVEIHTDMGRFIMVAKHHE 123
+A K N+ +AG +V+A C+K A+ ++E A++I T G+F A
Sbjct: 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121
Query: 124 NIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLY 183
+ EI E +L D KAID Y+ A + YA +++ + +NKC IK A+ AL +A +Y
Sbjct: 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY 181
Query: 184 EQ 185
+
Sbjct: 182 SK 183
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 128 bits (324), Expect = 6e-37
Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 9/185 (4%)
Query: 2 ADNEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGN 61
A +A + +A+AEK + +S D A Y +A FK K+ +
Sbjct: 4 AQKISEAHEHIAKAEKYLKTS------FMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKD 57
Query: 62 AFLQAGTLHLKNNNKHDAGLCFVDAANCYKK-SNPAEAIKAIERAVEIHTDMGRFIMVAK 120
A+LQ H N + A F A K EA++ IE+A ++ + G A
Sbjct: 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117
Query: 121 HHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAI 180
+ ++ E D KA+ YQ AA + EE A + + K + D+A
Sbjct: 118 ALDRAGKLMEP--LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAA 175
Query: 181 KLYEQ 185
++
Sbjct: 176 ASLQK 180
Score = 30.2 bits (68), Expect = 0.33
Identities = 9/64 (14%), Positives = 22/64 (34%)
Query: 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSN 94
K DEA + +++K + + + + L + A C ++ + S
Sbjct: 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSG 229
Query: 95 PAEA 98
+
Sbjct: 230 SEDC 233
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 51.9 bits (125), Expect = 2e-08
Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 22/173 (12%)
Query: 31 TGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCY 90
+ ++L + L G G F A + + + N Y
Sbjct: 40 GSDGGSSMCLELALEGERLCNAGD-CRAGVAFFQAA--IQAGTEDLRTLSAIYSQLGNAY 96
Query: 91 -KKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADC 149
+ +A++ + + + M + AK N+ K + ++A +
Sbjct: 97 FYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL-KVMGRFDEAAICCERHLTL 155
Query: 150 YAGEENKSSANKCLIKIAN-YSALTDH----------------LDKAIKLYEQ 185
++ S + L + N Y A H L +A++ Y++
Sbjct: 156 ARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208
Score = 46.9 bits (112), Expect = 8e-07
Identities = 19/125 (15%), Positives = 44/125 (35%), Gaps = 4/125 (3%)
Query: 63 FLQAGTLHLKNNNKHDAGLCFVDAANCYK-KSNPAEAIKAIERAVEIHTDMGRFIMVAKH 121
+ + L ++ G + N Y + AI+ + + I + G +
Sbjct: 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRA 265
Query: 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIAN-YSALTDHLDKAI 180
+ N+ + L E A +HY+ + + + N Y+ L + + AI
Sbjct: 266 NSNLGNSH-IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF-NTAI 323
Query: 181 KLYEQ 185
+ + +
Sbjct: 324 EYHNR 328
Score = 42.3 bits (100), Expect = 3e-05
Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 15/155 (9%)
Query: 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLH-----LKNNNKHDAGLCFVDAANCYK 91
DEA R L + G+ + L+ KH + K
Sbjct: 143 DEAAICCERHLTLAR------QLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK 196
Query: 92 KSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYA 151
++ A++ + +++ D+G + N+ Y L D + AI+H+Q
Sbjct: 197 EA-LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTY-YLLGDFQAAIEHHQERLRIAR 254
Query: 152 GEENKSSANKCLIKIAN-YSALTDHLDKAIKLYEQ 185
++++ + + N + L + A + Y++
Sbjct: 255 EFGDRAAERRANSNLGNSHIFLGQF-EDAAEHYKR 288
Score = 41.5 bits (98), Expect = 7e-05
Identities = 11/102 (10%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Query: 85 DAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQ 144
+ + + + + + + + E D + +Q
Sbjct: 14 ENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCN-AGDCRAGVAFFQ 72
Query: 145 HAADCYAGEENKSSANKCLIKIAN-YSALTDHLDKAIKLYEQ 185
A E+ + + ++ N Y L D+ +KA++ ++
Sbjct: 73 AAIQAG--TEDLRTLSAIYSQLGNAYFYLGDY-NKAMQYHKH 111
Score = 39.2 bits (92), Expect = 4e-04
Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 15/121 (12%)
Query: 33 GNKTDEAIDLYVRAGNLFKLGKKWNDGGN------AFLQAGTLHLKNNNKHDAGLCFVDA 86
G++ E NL G G + + L ++ +
Sbjct: 257 GDRAAERRAN----SNL---GNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309
Query: 87 ANCY-KKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH 145
N Y AI+ R + I ++G I A+ ++ + + E+A+ + +
Sbjct: 310 GNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA-IGGHERALKYAEQ 368
Query: 146 A 146
Sbjct: 369 H 369
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 49.6 bits (119), Expect = 1e-07
Identities = 27/174 (15%), Positives = 53/174 (30%), Gaps = 25/174 (14%)
Query: 33 GNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCY-K 91
G+ ++L + L K G G + F A + + + + N Y
Sbjct: 3 GSMEASCLELALEGERLCKSGD-CRAGVSFFEAA--VQVGTEDLKTLSAIYSQLGNAYFY 59
Query: 92 KSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA----- 146
+ A+A++ + + +G + AK N+ K L + ++AI Q
Sbjct: 60 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL-KVLGNFDEAIVCCQRHLDISR 118
Query: 147 ---------------ADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
+ Y + + D L A+ YE+
Sbjct: 119 ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172
Score = 45.8 bits (109), Expect = 2e-06
Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 63 FLQAGTLHLKNNNKHDAGLCFVDAANCY-KKSNPAEAIKAIERAVEIHTDMGRFIMVAKH 121
+ + +L ++ G F + N + N +A+ A E+ + I + G +
Sbjct: 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 229
Query: 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIAN-YSALTDHLDKAI 180
+ N+ Y L + E A ++Y+ ++++ + + N Y+ L D+ +KAI
Sbjct: 230 YSNLGNAY-IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY-EKAI 287
Query: 181 KLYEQ 185
+ +
Sbjct: 288 DYHLK 292
Score = 41.1 bits (97), Expect = 7e-05
Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 4/125 (3%)
Query: 63 FLQAGTLHLKNNNKHDAGLCFVDAANCYKK-SNPAEAIKAIERAVEIHTDMGRFIMVAKH 121
Q + + +K + + N Y A + ++ + + + + A+
Sbjct: 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 269
Query: 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIAN-YSALTDHLDKAI 180
++ Y L+D EKAID++ ++ + + N Y+AL +H D+A+
Sbjct: 270 CYSLGNTY-TLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH-DQAM 327
Query: 181 KLYEQ 185
E+
Sbjct: 328 HFAEK 332
Score = 35.0 bits (81), Expect = 0.010
Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 2/115 (1%)
Query: 33 GNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK 92
++ EA Y L + + L+ + + N++ G N Y
Sbjct: 261 KDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA 319
Query: 93 -SNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
N +A+ E+ +EI ++G N++++
Sbjct: 320 LGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSEN 374
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 46.8 bits (112), Expect = 3e-07
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 89 CYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAAD 148
Y N +A+ A E+ + I + G + N+ Y L + E A ++Y+
Sbjct: 19 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAY-IFLGEFETASEYYKKTLL 77
Query: 149 CYAGEENKSSANKCLIKIAN-YSALTDHLDKAIKLYEQ 185
++++ + + N Y+ L D+ +KAI + +
Sbjct: 78 LARQLKDRAVEAQSCYSLGNTYTLLQDY-EKAIDYHLK 114
Score = 41.8 bits (99), Expect = 2e-05
Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 5/155 (3%)
Query: 33 GNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYK- 91
G++ + + LG + D A Q + + +K + + + N Y
Sbjct: 3 GSRAAQGRAFGNLGNTHYLLGN-FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF 61
Query: 92 KSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYA 151
A + ++ + + + + A+ ++ Y L+D EKAID++
Sbjct: 62 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY-TLLQDYEKAIDYHLKHLAIAQ 120
Query: 152 GEENKSSANKCLIKIAN-YSALTDHLDKAIKLYEQ 185
+++ + + N Y+AL +H D+A+ E+
Sbjct: 121 ELKDRIGEGRACWSLGNAYTALGNH-DQAMHFAEK 154
Score = 35.2 bits (82), Expect = 0.004
Identities = 10/85 (11%), Positives = 29/85 (34%), Gaps = 2/85 (2%)
Query: 63 FLQAGTLHLKNNNKHDAGLCFVDAANCY-KKSNPAEAIKAIERAVEIHTDMGRFIMVAKH 121
+ + L + ++ N Y + +AI + + I ++ I +
Sbjct: 72 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131
Query: 122 HENIAEIYEKELEDQEKAIDHYQHA 146
++ Y L + ++A+ +
Sbjct: 132 CWSLGNAY-TALGNHDQAMHFAEKH 155
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 46.5 bits (111), Expect = 1e-06
Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 25/169 (14%)
Query: 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYK-KSNPA 96
++L + L K G G + F A + + + + N Y + A
Sbjct: 4 SCLELALEGERLCKSGD-CRAGVSFFEAA--VQVGTEDLKTLSAIYSQLGNAYFYLHDYA 60
Query: 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA---------- 146
+A++ + + +G + AK N+ K L + ++AI Q
Sbjct: 61 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTL-KVLGNFDEAIVCCQRHLDISRELNDK 119
Query: 147 ----------ADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
+ Y + + + L A+ LYE+
Sbjct: 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168
Score = 46.1 bits (110), Expect = 2e-06
Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 63 FLQAGTLHLKNNNKHDAGLCFVDAANCYK-KSNPAEAIKAIERAVEIHTDMGRFIMVAKH 121
+ + +L ++ G F + N + N +A+ A E+ + I + G +
Sbjct: 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 225
Query: 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIAN-YSALTDHLDKAI 180
+ N+ Y L + E A ++Y+ ++++ + + N Y+ L D+ +KAI
Sbjct: 226 YSNLGNAY-IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY-EKAI 283
Query: 181 KLYEQ 185
+ +
Sbjct: 284 DYHLK 288
Score = 40.3 bits (95), Expect = 1e-04
Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 28/172 (16%)
Query: 41 DLYVRAGNLFKLGKKWNDGGN------AFLQAGTLHLKNNNKHDAGLCFVDAANCYK-KS 93
DL + +LG + + TL ++ + N K
Sbjct: 38 DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97
Query: 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIY-------------------EKELE 134
N EAI +R ++I ++ + A+ N+ +Y E
Sbjct: 98 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157
Query: 135 DQEKAIDHYQHAADCYAGEENKSSANKCLIKIAN-YSALTDHLDKAIKLYEQ 185
+ A+D Y+ ++++ + + N + L + A+ +EQ
Sbjct: 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF-RDAVIAHEQ 208
Score = 36.8 bits (86), Expect = 0.002
Identities = 15/115 (13%), Positives = 37/115 (32%), Gaps = 3/115 (2%)
Query: 33 GNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK 92
G+K E LG+ + + + L + ++ N Y
Sbjct: 217 GDKAAERRAYSNLGNAYIFLGE-FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275
Query: 93 -SNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
+ +AI + + I ++ I + ++ Y L + ++A+ +
Sbjct: 276 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA-LGNHDQAMHFAEKH 329
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 45.0 bits (107), Expect = 2e-06
Identities = 14/125 (11%), Positives = 35/125 (28%), Gaps = 3/125 (2%)
Query: 63 FLQAGTLHLKNNNKHDAGLCFVDAANCYK-KSNPAEAIKAIERAVEIHTDMGRFIMVAKH 121
L + A Y EA + + + G +
Sbjct: 9 ALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRA 68
Query: 122 HENIAEIYEKELEDQEKAIDHYQHAADCY-AGEENKSSANKCLIKIANYSALTDHLDKAI 180
+ + + + + A + + + E+ +A+ ++A + L A
Sbjct: 69 LHQVGMVE-RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGAR 127
Query: 181 KLYEQ 185
+ YE+
Sbjct: 128 QEYEK 132
Score = 41.5 bits (98), Expect = 3e-05
Identities = 8/89 (8%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Query: 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENK 156
EA + + + + +Y ++ ++A +Q +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVY-AFMDRFDEARASFQALQQQAQKSGDH 62
Query: 157 SSANKCLIKIANYSALTDHLDKAIKLYEQ 185
++ ++ L ++ + + D A + + +
Sbjct: 63 TAEHRALHQVGMVERMAGNWDAARRCFLE 91
Score = 35.7 bits (83), Expect = 0.003
Identities = 16/133 (12%), Positives = 44/133 (33%), Gaps = 21/133 (15%)
Query: 37 DEAIDLYVRAGNLF-KLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNP 95
D A ++ L L + + T+ +
Sbjct: 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVA-------------------LHFGDL 123
Query: 96 AEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEEN 155
A A + E+++ + +A + ++ ++ ++ +A H+ A D +A E+
Sbjct: 124 AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA-QQEKNLLEAQQHWLRARDIFAELED 182
Query: 156 KSSANKCLIKIAN 168
+ N+ + ++
Sbjct: 183 SEAVNELMTRLNG 195
Score = 29.9 bits (68), Expect = 0.29
Identities = 11/103 (10%), Positives = 31/103 (30%), Gaps = 2/103 (1%)
Query: 31 TGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCY 90
+ + + Y A G + ++ + +++ F +
Sbjct: 99 LPEDPLAASANAYEVATVALHFGD-LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157
Query: 91 KKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKE 132
++ N EA + RA +I ++ V + + +
Sbjct: 158 QQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHH 200
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 42.1 bits (99), Expect = 4e-05
Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 3/116 (2%)
Query: 71 LKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYE 130
+ N + A N +AI ++A + + ++ + NI
Sbjct: 176 HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235
Query: 131 KELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIAN-YSALTDHLDKAIKLYEQ 185
E AI +++ A + S + I + L DKA + + +
Sbjct: 236 -SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKI-DKAHEYHSK 289
Score = 30.2 bits (68), Expect = 0.37
Identities = 13/149 (8%), Positives = 43/149 (28%), Gaps = 9/149 (6%)
Query: 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPA 96
+A L ++ D + H + ++ ++ +
Sbjct: 29 PDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEP----LEKMRIEEQPRLS 84
Query: 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENK 156
+ + I++ T + + + +YE + + AI ++ A +++
Sbjct: 85 DLLLEIDKKQARLTGLLEYY----FNFFRG-MYELDQREYLSAIKFFKKAESKLIFVKDR 139
Query: 157 SSANKCLIKIANYSALTDHLDKAIKLYEQ 185
+ K++ ++ Q
Sbjct: 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQ 168
Score = 30.2 bits (68), Expect = 0.38
Identities = 16/129 (12%), Positives = 41/129 (31%), Gaps = 17/129 (13%)
Query: 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS 93
++ ++AI + RA +F+ A+ +H K A +K+
Sbjct: 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA 297
Query: 94 N----------------PAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQE 137
+AI+ + + + ++A+ Y + ++ +
Sbjct: 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHE-RKNFQ 356
Query: 138 KAIDHYQHA 146
KA ++
Sbjct: 357 KASAYFLKV 365
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 41.0 bits (96), Expect = 1e-04
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 86 AANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH 145
A N + +A+ +E A+E+ D+ +A NIA Y++ D + A++H+Q
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR-SGDDQMAVEHFQK 247
Query: 146 AADCYAGEENKSSANKCLIKIAN-YSALTDHLDKAIKLYEQ 185
AA + E+ K L ++ KA + E+
Sbjct: 248 AAK-VSREKVPDLLPKVLFGLSWTLCKAGQT-QKAFQFIEE 286
Score = 32.5 bits (74), Expect = 0.061
Identities = 14/123 (11%), Positives = 36/123 (29%), Gaps = 6/123 (4%)
Query: 63 FLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHH 122
F +A + + + F + K +A + IE ++ T K +
Sbjct: 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS-----HKFY 299
Query: 123 ENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKL 182
+ + + + + + + + C A + H ++A
Sbjct: 300 KELFLFL-QAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAF 358
Query: 183 YEQ 185
Y +
Sbjct: 359 YRK 361
Score = 31.7 bits (72), Expect = 0.11
Identities = 18/149 (12%), Positives = 45/149 (30%), Gaps = 11/149 (7%)
Query: 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPA 96
+A L + ++ D + H + + G + +
Sbjct: 29 PDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTY------GNRPTVT 82
Query: 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENK 156
E ++ IE + T + ++ +YE + ++ +AI +Y+ A +
Sbjct: 83 ELLETIETPQKKLTGLLKYY----SLFFRG-MYEFDQKEYVEAIGYYREAEKELPFVSDD 137
Query: 157 SSANKCLIKIANYSALTDHLDKAIKLYEQ 185
+ K+A ++ Q
Sbjct: 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166
Score = 27.1 bits (60), Expect = 4.1
Identities = 12/113 (10%), Positives = 26/113 (23%), Gaps = 6/113 (5%)
Query: 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS 93
L+ + L K G+ + ++K L
Sbjct: 256 VPDLLPKVLFGLSWTLCKAGQ-TQKAFQFIEEGLDHITARSHKFYKEL----FLFLQAVY 310
Query: 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
+ I + + + A ++E E+A Y+
Sbjct: 311 KETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES-SCHFEQAAAFYRKV 362
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.003
Identities = 33/230 (14%), Positives = 62/230 (26%), Gaps = 94/230 (40%)
Query: 1 MADNEQKARQLVAEAEKKISS----SSKGF-----FSQ---FTGGNKTDEAIDLYVRAGN 48
+ D + K ++ E + +S S KG F+Q ++A
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL----MEKAA-------- 1743
Query: 49 LFKLGKKWN--DGGNAFLQAGTLH-------LKNNNKHDAG-LCFVDAANCYKKSNPAEA 98
F+ K F AG H L A +
Sbjct: 1744 -FEDLKSKGLIPADATF--AG--HSLGEYAALA----SLADVMSIESLV----------E 1784
Query: 99 I-----KAIERAVEI-HTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152
+ ++ AV + M+A + +A + +E A+ +
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE------ALQYV-----V--- 1830
Query: 153 EENKSSANKCLIKIANY----------------SALTDHLD----KAIKL 182
E L++I NY +T+ L+ + I +
Sbjct: 1831 -ERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 34.8 bits (79), Expect = 0.010
Identities = 15/84 (17%), Positives = 34/84 (40%)
Query: 86 AANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH 145
A Y S E++ + +A+EI + ++ + + E K ++ + D Y+
Sbjct: 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262
Query: 146 AADCYAGEENKSSANKCLIKIANY 169
A+ + E + + KI+
Sbjct: 263 ASFFFDILEMHAYKEALVNKISRL 286
Score = 27.8 bits (61), Expect = 2.1
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 1/99 (1%)
Query: 88 NCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAA 147
K+ E + ++ F + +A K+ D E I +
Sbjct: 84 MLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK-VDYEYCILELKKLL 142
Query: 148 DCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186
+ + IAN A +L K I L+EQ+
Sbjct: 143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI 181
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 33.4 bits (76), Expect = 0.036
Identities = 21/163 (12%), Positives = 45/163 (27%), Gaps = 29/163 (17%)
Query: 25 GFFSQFTGGNKTDEAIDLYVRAGNL-FKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCF 83
S +++ A + G+ W GNA+L +N
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ----- 238
Query: 84 VDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHY 143
+A+ A +A ++ H N A ++ K E +A++ +
Sbjct: 239 -------------QALSAYAQAEKVDRKASSN---PDLHLNRATLH-KYEESYGEALEGF 281
Query: 144 QHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186
AA + + + L ++ +
Sbjct: 282 SQAA------ALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK
guanine nucleotide exchange factors; 2.70A {Homo
sapiens} PDB: 3b13_A
Length = 436
Score = 33.1 bits (75), Expect = 0.042
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 11/93 (11%)
Query: 69 LHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAI-----------ERAVEIHTDMGRFIM 117
LHL +N +A + K S+ A + + + ++ + +
Sbjct: 44 LHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFD 103
Query: 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCY 150
K E + ++ E E I Y+ +
Sbjct: 104 KGKMWEEAISLCKELAEQYEMEIFDYELLSQNL 136
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 33.1 bits (76), Expect = 0.047
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 10/113 (8%)
Query: 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSN 94
K + ++ + + ++ D + + + + + +C+ K
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESV--MKTEPSIAEYTVRSKERICHCFSKDE 309
Query: 95 -PAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
P EAI+ +++ D ++ AE Y E ++AI Y+ A
Sbjct: 310 KPVEAIRVCSEVLQMEPDN------VNALKDRAEAYLI-EEMYDEAIQDYETA 355
Score = 29.7 bits (67), Expect = 0.64
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 16/107 (14%)
Query: 87 ANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH 145
A C+ K P +AI ++ A ++ D + I+ +Y +L D E ++ +
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDN------TEAFYKISTLY-YQLGDHELSLSEVRE 236
Query: 146 A-------ADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
C+A + NK + + A YE
Sbjct: 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY-TDATSKYES 282
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.11
Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Query: 90 YK-KSNPAEAIKA-IE 103
Y S PA AIKA +E
Sbjct: 32 YADDSAPALAIKATME 47
Score = 26.1 bits (56), Expect = 5.5
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 14/41 (34%)
Query: 6 QKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRA 46
+K + L KK+ +S K + D A L ++A
Sbjct: 18 EK-QAL-----KKLQASLKLY--------ADDSAPALAIKA 44
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 31.7 bits (71), Expect = 0.12
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 87 ANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH 145
AN ++ N EA++ +A+E+ + A H N+A + ++ ++A+ HY+
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVL-QQQGKLQEALMHYKE 68
Query: 146 A 146
A
Sbjct: 69 A 69
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 31.5 bits (72), Expect = 0.13
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 11/106 (10%)
Query: 42 LYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSN-PAEAIK 100
L A L + G+ + D + + + + + +C+ K P EAI+
Sbjct: 237 LIESAEELIRDGR-YTDATSKYESV--MKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293
Query: 101 AIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
+++ D ++ AE Y E ++AI Y+ A
Sbjct: 294 ICSEVLQMEPDN------VNALKDRAEAY-LIEEMYDEAIQDYEAA 332
Score = 28.8 bits (65), Expect = 1.1
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 16/107 (14%)
Query: 87 ANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH 145
A C+ K P +AI ++ A ++ +D + I+ +Y +L D E ++ +
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDN------TEAFYKISTLY-YQLGDHELSLSEVRE 213
Query: 146 A-------ADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
C+A + NK + + A YE
Sbjct: 214 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY-TDATSKYES 259
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 31.1 bits (71), Expect = 0.15
Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 10/101 (9%)
Query: 89 CYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAAD 148
+N A + +A+ I + + + + + + A + A +
Sbjct: 169 YGLTNNSKLAERFFSQALSIAPED------PFVMHEVGVVAFQ-NGEWKTAEKWFLDALE 221
Query: 149 CYAGEENKSSANK---CLIKIANYSALTDHLDKAIKLYEQL 186
N+ + +K L + + +A+ + Q
Sbjct: 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262
Score = 30.0 bits (68), Expect = 0.40
Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 25/131 (19%)
Query: 34 NKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQA----GTLHLKNNN 75
N + A + +A G + +W FL A + +
Sbjct: 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232
Query: 76 KHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELED 135
L C K AEA+ +A+ + A + I I+ + +
Sbjct: 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN------ASTYSAIGYIH-SLMGN 285
Query: 136 QEKAIDHYQHA 146
E A+D++ A
Sbjct: 286 FENAVDYFHTA 296
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 31.0 bits (71), Expect = 0.18
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 21/112 (18%)
Query: 86 AANCYKKSNPAEAIKAIERAVEI--------HTDMGRFIMVAKHHENIAEIYEKELEDQE 137
A K+ EA +RA+EI H D VAK N+A + + E
Sbjct: 118 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------VAKQLNNLALLC-QNQGKYE 170
Query: 138 KAIDHYQHAADCYA---GEENKSSANKCLIKIAN-YSALTDHLDKAIKLYEQ 185
+ +YQ A + Y G ++ + A K +A+ Y +A LY++
Sbjct: 171 EVEYYYQRALEIYQTKLGPDDPNVA-KTKNNLASCYLKQGKF-KQAETLYKE 220
Score = 27.5 bits (62), Expect = 2.8
Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 21/111 (18%)
Query: 87 ANCYKKS-NPAEAIKAIERAVEI---------HTDMGRFIMVAKHHENIAEIYEKELEDQ 136
A+CY K +A + + + + E E Q
Sbjct: 202 ASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE------NKPIWMHAEEREEC-KGKQ 254
Query: 137 EKAIDHYQHAADCYA-GEENKSSANKCLIKIAN-YSALTDHLDKAIKLYEQ 185
+ ++ A ++ + L + Y + A L E
Sbjct: 255 KDGTSFGEYGGWYKACKVDSPTVT-TTLKNLGALYRRQGKF-EAAETLEEA 303
Score = 27.1 bits (61), Expect = 3.6
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 22/112 (19%)
Query: 87 ANCY-KKSNPAEAIKAIERAVEI--------HTDMGRFIMVAKHHENIAEIYEKELEDQE 137
A Y ++ +A + A+ I H VA N+A +Y K +
Sbjct: 76 ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA------VAATLNNLAVLYGK-RGKYK 128
Query: 138 KAIDHYQHAADCYA---GEENKSSANKCLIKIAN-YSALTDHLDKAIKLYEQ 185
+A + A + G+++ A K L +A + ++ Y++
Sbjct: 129 EAEPLCKRALEIREKVLGKDHPDVA-KQLNNLALLCQNQGKY-EEVEYYYQR 178
Score = 26.7 bits (60), Expect = 5.0
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 21/102 (20%)
Query: 96 AEAIKAIERAVEI--------HTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAA 147
A+ ++A+E H D VA +A +Y ++ + A + A
Sbjct: 44 EVAVPLCKQALEDLEKTSGHDHPD------VATMLNILALVY-RDQNKYKDAANLLNDAL 96
Query: 148 DCYA---GEENKSSANKCLIKIAN-YSALTDHLDKAIKLYEQ 185
G+++ + A L +A Y + +A L ++
Sbjct: 97 AIREKTLGKDHPAVAA-TLNNLAVLYGKRGKY-KEAEPLCKR 136
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 30.8 bits (70), Expect = 0.21
Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 17/106 (16%)
Query: 90 YKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA--- 146
YK+ E+ + + AEI + D + AI Y A
Sbjct: 355 YKQGKFTESEAFFNETKLKFPT------LPEVPTFFAEIL-TDRGDFDTAIKQYDIAKRL 407
Query: 147 ----ADCY---AGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
+ K++ + + AIKL +
Sbjct: 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453
Score = 28.9 bits (65), Expect = 1.2
Identities = 9/97 (9%), Positives = 30/97 (30%), Gaps = 14/97 (14%)
Query: 89 CYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAAD 148
+ K+N +A ++ ++ +H + +A + E+ ++ +Q A
Sbjct: 253 HFLKNNLLDAQVLLQESINLHPT-------PNSYIFLALTL-ADKENSQEFFKFFQKA-- 302
Query: 149 CYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
+ + A + +++
Sbjct: 303 ----VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQK 335
Score = 28.1 bits (63), Expect = 1.8
Identities = 24/160 (15%), Positives = 53/160 (33%), Gaps = 24/160 (15%)
Query: 34 NKTDEAIDLYVRAGNLF-KLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKK 92
D AI Y A L K G +A L +++ +
Sbjct: 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS----------QDPTQLDE 441
Query: 93 SNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG 152
AIK + +A E+ + +A++ ++E ++AI+ ++ +A
Sbjct: 442 EKFNAAIKLLTKACELDPR------SEQAKIGLAQLK-LQMEKIDEAIELFEDSAILART 494
Query: 153 EENK------SSANKCLIKIANYSALTDHLDKAIKLYEQL 186
+ K + A K ++ ++ ++ + Y
Sbjct: 495 MDEKLQATTFAEAAKIQKRLRADPIISAKMELTLARYRAK 534
Score = 26.2 bits (58), Expect = 7.6
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 73 NNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKE 132
+ + A + + N EAIK + A+E+ + F + NI+ Y
Sbjct: 19 SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF------YSNISACY-IS 71
Query: 133 LEDQEKAIDHYQHA 146
D EK I+ A
Sbjct: 72 TGDLEKVIEFTTKA 85
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 30.1 bits (68), Expect = 0.23
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 13/110 (11%)
Query: 37 DEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPA 96
D LY N ++ GK W+D F L + +DA A
Sbjct: 16 DTLEQLYALGFNQYQAGK-WDDAQKIFQALCML-----DHYDARYFLGLGACRQSLGLYE 69
Query: 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
+A+++ + + + + AE + +L D + A + A
Sbjct: 70 QALQSYSYGALMDINE------PRFPFHAAECH-LQLGDLDGAESGFYSA 112
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 30.8 bits (69), Expect = 0.24
Identities = 15/132 (11%), Positives = 38/132 (28%), Gaps = 27/132 (20%)
Query: 34 NKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLK-----NN 74
+ A +L + + + L A +
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272
Query: 75 NKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELE 134
+ + + + A + K E+ +AI +++ ++ + ++YE +
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-------WLNYVLLGKVYEMK-G 324
Query: 135 DQEKAIDHYQHA 146
+A D Y A
Sbjct: 325 MNREAADAYLTA 336
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 30.5 bits (69), Expect = 0.28
Identities = 13/100 (13%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 86 AANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH 145
+ K++P A + I++A+E+ + +A I + D + +++
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIELFPR-------VNSYIYMALIM-ADRNDSTEYYNYFDK 295
Query: 146 AADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
A + + +++ + + + D+A K +++
Sbjct: 296 AL-----KLDSNNS-SVYYHRGQMNFILQNYDQAGKDFDK 329
Score = 29.3 bits (66), Expect = 0.80
Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 12/100 (12%)
Query: 90 YKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAA-- 147
Y+++ + A + + AEI + D +KA+ Y A
Sbjct: 349 YRENKFDDCETLFSEAKRKFPE------APEVPNFFAEIL-TDKNDFDKALKQYDLAIEL 401
Query: 148 --DCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
+ + + + +A L E+
Sbjct: 402 ENKLDGIYVGIAPLVGKATLLTRNPTVEN-FIEATNLLEK 440
Score = 26.6 bits (59), Expect = 6.1
Identities = 23/160 (14%), Positives = 46/160 (28%), Gaps = 26/160 (16%)
Query: 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDA----GLCFVDAANCY 90
K A+ L + F+ K ++D + A L+ C+
Sbjct: 2 KDKYALALKDKGNQFFRNKK-YDDAIKYYNWA----LELKEDPVFYSNLSACY------V 50
Query: 91 KKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAA--D 148
+ + ++ +A+E+ D +K A E L A+ +
Sbjct: 51 SVGDLKKVVEMSTKALELKPDY------SKVLLRRASANEG-LGKFADAMFDLSVLSLNG 103
Query: 149 CYAGEENKSSANKCLIKIA--NYSALTDHLDKAIKLYEQL 186
+ + + L K A +D A +L
Sbjct: 104 DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTEL 143
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 30.2 bits (68), Expect = 0.34
Identities = 9/90 (10%), Positives = 21/90 (23%), Gaps = 8/90 (8%)
Query: 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAG- 152
+ + + AV +A+ + D Q + G
Sbjct: 4 DGPRELLQLRAAVRHRPQD------FVAWLMLADAE-LGMGDTTAGEMAVQRGLALHPGH 56
Query: 153 EENKSSANKCLIKIANYSALTDHLDKAIKL 182
E + + ++ L +A
Sbjct: 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDA 86
Score = 29.4 bits (66), Expect = 0.67
Identities = 12/129 (9%), Positives = 24/129 (18%), Gaps = 33/129 (25%)
Query: 87 ANCYKKS-NPAEAIKAIERAVEIH--------------TDMGRFIMV------------- 118
A+ + A++R + +H R
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89
Query: 119 -AKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLD 177
+ ++ E A Y A + + L+ LD
Sbjct: 90 HPGIALWLGHAL-EDAGQAEAAAAAYTRA---HQLLPEEPYITAQLLNWRRRLCDWRALD 145
Query: 178 KAIKLYEQL 186
Sbjct: 146 VLSAQVRAA 154
Score = 26.7 bits (59), Expect = 5.7
Identities = 15/153 (9%), Positives = 38/153 (24%), Gaps = 31/153 (20%)
Query: 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDA------- 86
T R L A + G + +A + A
Sbjct: 37 GDTTAGEMAVQRGLAL------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90
Query: 87 -------ANCYKKS-NPAEAIKAIERAVEIHTDMG----------RFIMVAKHHENIAEI 128
+ + + A A RA ++ + R + + + ++
Sbjct: 91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150
Query: 129 YEKELEDQEKAIDHYQHAADCYAGEENKSSANK 161
+ A++ + ++ + E + A
Sbjct: 151 VRAAVAQGVGAVEPFAFLSEDASAAEQLACART 183
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 30.3 bits (68), Expect = 0.40
Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 9/144 (6%)
Query: 48 NLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVE 107
NL + +D + N + A +C + A + K A++ + +A E
Sbjct: 23 NLMEGENSLDDFEDKVFYRTEF---QNREFKATMCNLLAYLKHLKGQNEAALECLRKAEE 79
Query: 108 IHTDMG---RFIMVAKHHENIAEIYE--KELEDQEKAIDHYQHAADCYAGEENKSSAN-K 161
+ I N A +Y L D + +D +H + ++ S
Sbjct: 80 LIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139
Query: 162 CLIKIANYSALTDHLDKAIKLYEQ 185
C + ++A +E+
Sbjct: 140 CEEGWTRLKCGGNQNERAKVCFEK 163
Score = 29.1 bits (65), Expect = 0.78
Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENK 156
++ E V T+ A +A + E A++ + A + E
Sbjct: 29 NSLDDFEDKVFYRTEFQNREFKATMCNLLAYLK-HLKGQNEAALECLRKAEELIQQEHAD 87
Query: 157 SSANKCLIKIANYSALTDHL---DKAIKLYEQL 186
+ + L+ NY+ + H+ +++
Sbjct: 88 QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV 120
Score = 28.0 bits (62), Expect = 2.1
Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 10/98 (10%)
Query: 90 YKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYE--KELEDQEKAIDHYQHAA 147
+ A E+A+E + +A + AID + A
Sbjct: 149 CGGNQNERAKVCFEKALEKKPKN------PEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202
Query: 148 DCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
+N+ +K+ + + KL E+
Sbjct: 203 RLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEE 238
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 29.7 bits (67), Expect = 0.43
Identities = 9/96 (9%), Positives = 29/96 (30%), Gaps = 12/96 (12%)
Query: 90 YKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADC 149
+ +A++ E+ +++ D + + Y E ++K ++
Sbjct: 99 VCRGQEKDALRMYEKILQLEADN------LAANIFLGNYYYLTAEQEKKKLETDYKKL-- 150
Query: 150 YAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
+ + + T +KA ++
Sbjct: 151 ----SSPTKMQYARYRDGLSKLFTTRYEKARNSLQK 182
Score = 27.0 bits (60), Expect = 3.3
Identities = 15/110 (13%), Positives = 36/110 (32%), Gaps = 17/110 (15%)
Query: 86 AANCYKKSNPAEAIKAIERAVEIHTD----------MGRFIMVAKHHENIAEIYEKELED 135
+ + +A+ + + ++ D + +K +A Y K+ +
Sbjct: 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY-KKNRN 69
Query: 136 QEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
+KA Y+ + + CL A A+++YE+
Sbjct: 70 YDKAYLFYKELL------QKAPNNVDCLEACAEMQVCRGQEKDALRMYEK 113
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 29.9 bits (68), Expect = 0.44
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 87 ANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH 145
Y + N +A + +A+EI A H +A ++ + + + A + Y+
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEIDPSS------ADAHAALAVVF-QTEMEPKLADEEYRK 96
Query: 146 A 146
A
Sbjct: 97 A 97
Score = 26.5 bits (59), Expect = 6.0
Identities = 8/57 (14%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 90 YKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
Y++ EA + + A + R ++ EN+ + +++ +A ++++ +
Sbjct: 116 YEQKRYEEAYQRLLEASQDTLYPER----SRVFENLGLVS-LQMKKPAQAKEYFEKS 167
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 29.8 bits (68), Expect = 0.50
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 90 YKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
++ N EA++ +A+E+ + A H N+A + ++ ++A+ HY+ A
Sbjct: 316 REQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVL-QQQGKLQEALMHYKEA 365
Score = 29.4 bits (67), Expect = 0.59
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 89 CYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
++ + A++ + +A+ + N+ +Y KE ++AI+HY+HA
Sbjct: 43 HFQCRRLDRSAHFSTLAIKQNPL------LAEAYSNLGNVY-KERGQLQEAIEHYRHA 93
Score = 29.0 bits (66), Expect = 0.82
Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 34/131 (25%)
Query: 34 NKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDA 79
+ AI + +A GN+ K + ++ A+L+A L L N+
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA--LSLSPNH-AVV 239
Query: 80 ----GLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELED 135
+ Y++ AI RA+E+ + N+A KE
Sbjct: 240 HGNLACVY------YEQGLIDLAIDTYRRAIELQPHF------PDAYCNLANAL-KEKGS 286
Query: 136 QEKAIDHYQHA 146
+A D Y A
Sbjct: 287 VAEAEDCYNTA 297
Score = 29.0 bits (66), Expect = 0.88
Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 26/127 (20%)
Query: 34 NKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDA 79
+ D + A GN++K + + + A L LK +
Sbjct: 47 RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA--LRLKPD---FI 101
Query: 80 GLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKA 139
AA + A++A A++ + D + ++ + K L E+A
Sbjct: 102 DGYINLAAALVAAGDMEGAVQAYVSALQYNPD------LYCVRSDLGNLL-KALGRLEEA 154
Query: 140 IDHYQHA 146
Y A
Sbjct: 155 KACYLKA 161
Score = 26.7 bits (60), Expect = 5.2
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
EA +A+E + A N+ ++ + AI H++ A
Sbjct: 153 EAKACYLKAIETQPN------FAVAWSNLGCVF-NAQGEIWLAIHHFEKA 195
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 29.2 bits (66), Expect = 0.65
Identities = 12/113 (10%), Positives = 29/113 (25%), Gaps = 15/113 (13%)
Query: 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS 93
+ +A ++ L + T + G + S
Sbjct: 146 SLQRQACEILRDW-----LRYTPA-----YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195
Query: 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
E + AV + + + ++ + +KA+D + A
Sbjct: 196 LFLEVKELFLAAVRLDPTS----IDPDVQCGLGVLF-NLSGEYDKAVDCFTAA 243
Score = 28.1 bits (63), Expect = 1.8
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 7/113 (6%)
Query: 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS 93
E ++ R ++D +A G + N D F + ++
Sbjct: 19 KLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEG 78
Query: 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
+ A+ E AV+ + + + E E + AI +
Sbjct: 79 DLPNAVLLFEAAVQQDPKH------MEAWQYLGTTQ-AENEQELLAISALRRC 124
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 29.2 bits (66), Expect = 0.81
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 90 YKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
KK + AI+ + AV+ T + I + + AI + +
Sbjct: 85 MKKGQDSLAIQQYQAAVDRDTTR------LDMYGQIGSYF-YNKGNFPLAIQYMEKQ 134
Score = 28.8 bits (65), Expect = 0.90
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 6/98 (6%)
Query: 90 YKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAA-- 147
Y +A + + +E+ + I + A + Q A +Y+
Sbjct: 153 YYNKEYVKADSSFVKVLELKPN----IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208
Query: 148 DCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
G + K + IA Y + KA ++
Sbjct: 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 28.1 bits (63), Expect = 0.81
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
+ +E + TD + + Y E E + A+ H + A
Sbjct: 3 AITERLEAMLAQGTDN------MLLRFTLGKTY-AEHEQFDAALPHLRAA 45
Score = 26.9 bits (60), Expect = 1.9
Identities = 5/61 (8%), Positives = 18/61 (29%), Gaps = 8/61 (13%)
Query: 87 ANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH 145
Y + A+ + A++ + + + + + D+ A ++
Sbjct: 26 GKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQ-GQGDRAGARQAWES 78
Query: 146 A 146
Sbjct: 79 G 79
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 28.8 bits (65), Expect = 0.87
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 87 ANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH 145
A Y + + +A +IE A++ AEIY + L+ +KA + ++
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKN------ELAWLVRAEIY-QYLKVNDKAQESFRQ 67
Query: 146 A 146
A
Sbjct: 68 A 68
Score = 25.7 bits (57), Expect = 8.8
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 89 CYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
C + + PAE++ ++A+ T + N + A + + +
Sbjct: 87 CGRLNRPAESMAYFDKALADPTYPTP----YIANLNKGICS-AKQGQFGLAEAYLKRS 139
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 27.6 bits (62), Expect = 0.89
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 87 ANCYKKS-NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH 145
A + K N + A+ E VE D + ++ ++Y + L+ + AID Y
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDY------VGTYYHLGKLY-ERLDRTDDAIDTYAQ 66
Query: 146 A 146
Sbjct: 67 G 67
>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A
{Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB:
1e9z_B* 3qga_C* 3qgk_C*
Length = 569
Score = 29.2 bits (65), Expect = 0.93
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 11/92 (11%)
Query: 69 LHLKNNNKHDAGLC--FVDAANCYK-----KSNPAEAIKAIERAVEIHTDMGRFIMVAKH 121
K N +DA L A +K + P+ AI A+++ + +
Sbjct: 195 FLAKGNASNDASLADQIEAGAIGFKIHEDWGTTPS----AINHALDVADKYDVQVAIHTD 250
Query: 122 HENIAEIYEKELEDQEKAIDHYQHAADCYAGE 153
N A E + H H G
Sbjct: 251 TLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGH 282
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 29.0 bits (65), Expect = 1.1
Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 23/129 (17%)
Query: 34 NKTDEAIDLYVRA--------------GNLFKLGKKWNDGGNAFLQAGTLHLKNN-NKHD 78
A + + G + N F A L K N+
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
Query: 79 AGLCFVDAANCYKK-SNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQE 137
+ + + Y+K AI A+ + + + T+ A H IA +Y +
Sbjct: 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND------ANVHTAIALVY-LHKKIPG 567
Query: 138 KAIDHYQHA 146
AI H +
Sbjct: 568 LAITHLHES 576
Score = 27.5 bits (61), Expect = 3.3
Identities = 31/168 (18%), Positives = 49/168 (29%), Gaps = 29/168 (17%)
Query: 34 NKTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAAN----- 88
+ D+AI Y A LF+ +L G H++ N A +
Sbjct: 421 GEHDQAISAYTTAARLFQ------GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474
Query: 89 ----------CYKKSNPAEAIKAIERAVEIHTDMGRFI-MVAKHHENIAEIYEKELEDQE 137
+ KS+ AI + A+ + A N+ Y K L+ +
Sbjct: 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK-LKMYD 533
Query: 138 KAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
AID + + AN IA AI +
Sbjct: 534 AAIDALNQGLLL-----STNDAN-VHTAIALVYLHKKIPGLAITHLHE 575
Score = 27.1 bits (60), Expect = 3.8
Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 12/124 (9%)
Query: 74 NNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKEL 133
K +A +C++ SN A + + A+ + + + E +L
Sbjct: 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDL 254
Query: 134 -----------EDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTD-HLDKAIK 181
ED Y + + E+ A L I +D L KA
Sbjct: 255 VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT 314
Query: 182 LYEQ 185
L+ +
Sbjct: 315 LFVR 318
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 27.8 bits (62), Expect = 1.1
Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 17/104 (16%)
Query: 90 YKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADC 149
K +N AEA A E + + + ++ E E AI HA
Sbjct: 28 LKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQ-AENEKDGLAIIALNHARML 80
Query: 150 YAGEENKSSANK----CLIKIANYSALTDHLDKAIKL---YEQL 186
+ + + N +A L + YEQL
Sbjct: 81 ---DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 28.7 bits (65), Expect = 1.1
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 15/100 (15%)
Query: 90 YKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA--- 146
YK EAI+ +A E+H D + N A E + E AI A
Sbjct: 16 YKARQFDEAIEHYNKAWELHKD-------ITYLNNRAAAE-YEKGEYETAISTLNDAVEQ 67
Query: 147 -ADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
+ A + S K +I N L K I+ Y++
Sbjct: 68 GREMRADYKVIS---KSFARIGNAYHKLGDLKKTIEYYQK 104
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 28.6 bits (63), Expect = 1.2
Identities = 10/69 (14%), Positives = 22/69 (31%)
Query: 118 VAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLD 177
++ H I + ++ Q K + +E K + ++ L ++
Sbjct: 79 ISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVE 138
Query: 178 KAIKLYEQL 186
KA Y
Sbjct: 139 KAKADYHSA 147
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein
3; structural genomics, joint center for struct
genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 27.3 bits (60), Expect = 1.4
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 57 NDGGNAFLQAGTLHLKNNNKHDAGLCFVDAAN 88
GG L L+N G +N
Sbjct: 66 AQGGELMEYTTILRLRNVEFTSEGXYQCVISN 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 27.9 bits (63), Expect = 1.8
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 22/112 (19%)
Query: 87 ANCY-KKSNPAEAIKAIERAVEI--------HTDMGRFIMVAKHHENIAEIYEKELEDQE 137
A Y K+ EA +RA+EI H D VAK N+A + + E
Sbjct: 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD------VAKQLNNLALLC-QNQGKAE 144
Query: 138 KAIDHYQHAADCYA---GEENKSSANKCLIKIAN-YSALTDHLDKAIKLYEQ 185
+ +Y+ A + YA G ++ + A K +A+ Y + A LY++
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVA-KTKNNLASCYLKQGKY-QDAETLYKE 194
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic
phosphodiesterase 8A...; phosphodiesterase 8A PDE8A
inhibitor selectivity; 1.90A {Homo sapiens} PDB: 3ecn_A*
Length = 338
Score = 27.9 bits (62), Expect = 1.9
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Query: 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENK 156
+ I V + T+M + N LE+ + + + EN+
Sbjct: 175 TLRQGIIDMV-LATEMTKHFEHVNKFVNSINKPLATLEENGETDKNQEVINTMLRTPENR 233
Query: 157 SSANKCLIKIANYSALTDHLDKAIK 181
+ + LIK A+ S L I+
Sbjct: 234 TLIKRMLIKCADVSNPCRPLQYCIE 258
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 28.0 bits (62), Expect = 2.1
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 115 FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCY 150
++ +A +E AE A + AA C
Sbjct: 59 WMSLANEYEQEAERKVAL-GHDLSAGELLMSAALCA 93
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 27.1 bits (60), Expect = 2.2
Identities = 21/115 (18%), Positives = 33/115 (28%), Gaps = 21/115 (18%)
Query: 86 AANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH 145
A + Y K EA +IM +A IY+ E ++A D Y
Sbjct: 43 AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIM------GLAAIYQI-KEQFQQAADLYAV 95
Query: 146 A--------------ADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186
A C + A +C + +S KA + +
Sbjct: 96 AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
3j0j_D*
Length = 464
Score = 27.4 bits (61), Expect = 2.8
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 141 DHYQHAA---DCYA-GEENKSSANKCLIKIANYSALTDHLDKAIKLYEQL 186
DH Q + YA G + + L+ I ALT++ + ++ +
Sbjct: 374 DHKQVSDQLYSAYANGVDIRK-----LVAIIGEDALTENDRRYLQFADAF 418
>3oms_A PHNB protein; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
methyltransferase, GL family; 1.90A {Bacillus cereus}
Length = 138
Score = 26.6 bits (58), Expect = 3.1
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 85 DAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVA 119
+A N Y I +I R E ++ A
Sbjct: 23 EAMNFYTSLFDQSEIVSISRYDENGPGKEGTVIHA 57
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 27.3 bits (60), Expect = 3.2
Identities = 12/120 (10%), Positives = 33/120 (27%), Gaps = 11/120 (9%)
Query: 70 HLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIY 129
L ++ N + P + + ++++ + + + +
Sbjct: 68 KLHKKFLGKFKHVYI---NTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR 124
Query: 130 EKE------LEDQEKAIDHYQHA--ADCYAGEENKSSANKCLIKIANYSALTDHLDKAIK 181
+ L++ + + Y + + I I N D LD +K
Sbjct: 125 DYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVK 184
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 27.3 bits (60), Expect = 3.2
Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 94 NPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
A +E E + + ++ + ++Y + + A A
Sbjct: 268 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW-QAGRKSDAQRVLLDA 319
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 26.8 bits (59), Expect = 3.5
Identities = 17/137 (12%), Positives = 33/137 (24%), Gaps = 11/137 (8%)
Query: 60 GNAFLQAGTLH-LKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEI-------HTD 111
G GT+ L + + A N Y+ +A + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 112 MGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCL---IKIAN 168
+G ++ Y HAA+C + A L ++
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 169 YSALTDHLDKAIKLYEQ 185
L + +
Sbjct: 121 NXPEFXELSTRVSSMLE 137
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 27.2 bits (60), Expect = 3.6
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 12/99 (12%)
Query: 3 DNEQKARQLVAEAEKKISSSSKGFFSQFTGGNKTDEAIDLYVRAGNLFKLGKKWNDGGNA 62
N QKA L ++A ++ GN +EA+ LY A F K+ G+
Sbjct: 6 TNLQKAIDLASKAAQE-----------DKAGNY-EEALQLYQHAVQYFLHVVKYEAQGDK 53
Query: 63 FLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKA 101
Q+ L K P + ++
Sbjct: 54 AKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQKPVKEEQS 92
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing,
spliceosome, RNA-binding domain, SM fold, finger, RNA
recognition motif, 5' splice site; 5.49A {Homo sapiens}
PDB: 1uw2_A 2vrd_A
Length = 77
Score = 25.7 bits (56), Expect = 3.7
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 120 KHHENIAEIYEKELEDQEKAI 140
KH EN+ + Y K +E+Q +++
Sbjct: 29 KHKENVKDYYCKWMEEQAQSL 49
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 26.8 bits (59), Expect = 3.8
Identities = 10/71 (14%), Positives = 30/71 (42%)
Query: 80 GLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKA 139
L ++ + + + P I+A+ +A+E+ G +V + + ++++ + K
Sbjct: 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKG 159
Query: 140 IDHYQHAADCY 150
+D +
Sbjct: 160 VDQKKFIVQRT 170
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON
willebrand factor A domain, beta- RNA binding protein;
1.89A {Deinococcus radiodurans}
Length = 535
Score = 27.1 bits (59), Expect = 4.2
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 58 DGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIM 117
D L A + D + + D + +P A+ + + + I+
Sbjct: 442 DCAQPILWA----AQERLDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAP---KLIV 494
Query: 118 VA 119
V
Sbjct: 495 VG 496
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 26.1 bits (58), Expect = 4.2
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 87 ANCY-KKSNPAEAIKAIERAVEIHTDMGR-FIMVAKHHENIAEIYEKELEDQEKAIDHYQ 144
A Y +K + + + E+A+E+ + + +AK + I Y K E + AI Y
Sbjct: 45 AAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-EEKYKDAIHFYN 103
Query: 145 HA 146
+
Sbjct: 104 KS 105
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 26.9 bits (60), Expect = 4.4
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 8/106 (7%)
Query: 41 DLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAEAIK 100
++ R + +A + H +N K G F + K+ + I
Sbjct: 28 EMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGA-FEEGLKRLKEGDLPVTIL 86
Query: 101 AIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
+E A+ A+ + + E E+++ AI Q
Sbjct: 87 FMEAAILQDPGD------AEAWQFLGITQ-AENENEQAAIVALQRC 125
>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex,
amido hydrola 9244B, structural genomics, PSI-2; HET:
KCX; 2.62A {Agrobacterium tumefaciens}
Length = 417
Score = 26.6 bits (58), Expect = 4.9
Identities = 5/61 (8%), Positives = 18/61 (29%), Gaps = 6/61 (9%)
Query: 95 PAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE 154
+ + ++ +I + +MV ++ + + C+ G+
Sbjct: 184 GSWGVTPVKLGKKIAKILKVPMMVHVGE------PPALYDEVLEILGPGDVVTHCFNGKS 237
Query: 155 N 155
Sbjct: 238 G 238
>1tsj_A Conserved hypothetical protein; structural genomics, protein
structure initiative, PSI, nysgxrc; 2.60A
{Staphylococcus aureus subsp} SCOP: d.32.1.7
Length = 139
Score = 26.2 bits (57), Expect = 5.5
Identities = 4/35 (11%), Positives = 9/35 (25%)
Query: 85 DAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVA 119
+A Y I + + E + +
Sbjct: 18 EAVKLYTSLFEDSEIITMAKYGENGPGDPGTVQHS 52
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 26.5 bits (59), Expect = 6.0
Identities = 4/33 (12%), Positives = 16/33 (48%)
Query: 109 HTDMGRFIMVAKHHENIAEIYEKELEDQEKAID 141
+T + R + + + + ZI+ZK + ++
Sbjct: 257 YTALERTLFLZZVBDASLZIWZKNTAVHRRGLZ 289
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP:
d.109.1.1 PDB: 1svr_A 1svy_A
Length = 114
Score = 25.6 bits (56), Expect = 6.7
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 78 DAGLCFV--DAANCY----KKSNPAEAIKAIERAVEIHTDMG 113
++G CF+ Y KS+P E KA E A I +
Sbjct: 37 NSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAIDAERK 78
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 26.1 bits (58), Expect = 7.1
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 7/74 (9%)
Query: 73 NNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKE 132
NN + + K +N AEA A E + + + ++ E
Sbjct: 15 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER------EEAWRSLGLTQ-AE 67
Query: 133 LEDQEKAIDHYQHA 146
E AI HA
Sbjct: 68 NEKDGLAIIALNHA 81
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 25.4 bits (57), Expect = 7.3
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 97 EAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
EAI+ ++A+E+ + A+ N+ Y + D ++AI++YQ A
Sbjct: 61 EAIEYYQKALELDPNN------AEAWYNLGNAY-YKQGDYDEAIEYYQKA 103
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 25.4 bits (56), Expect = 7.7
Identities = 18/151 (11%), Positives = 39/151 (25%), Gaps = 46/151 (30%)
Query: 35 KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSN 94
+A+ Y +A G + D +L G+ + ++
Sbjct: 5 LEAQAVPYYEKA---IASGLQGKDLAECYLGLGST-FRTLGEYR---------------- 44
Query: 95 PAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYAGEE 154
+A + V+ + A + L E+ ++ + +E
Sbjct: 45 --KAEAVLANGVKQFPNHQAL------RVFYAMVL-YNLGRYEQGVELLLKIIAETSDDE 95
Query: 155 NKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
I +Y +AI Y
Sbjct: 96 T----------IQSY-------KQAILFYAD 109
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 26.1 bits (58), Expect = 7.9
Identities = 4/33 (12%), Positives = 15/33 (45%)
Query: 109 HTDMGRFIMVAKHHENIAEIYEKELEDQEKAID 141
+T + R + + ++ +++ +E E +
Sbjct: 257 YTALERTLFLDHCSDDHLRLWQVNVEVHEAGLK 289
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.30A {Thermotoga
maritima} SCOP: a.25.1.1
Length = 157
Score = 25.4 bits (55), Expect = 8.5
Identities = 10/95 (10%), Positives = 29/95 (30%), Gaps = 9/95 (9%)
Query: 90 YKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADC 149
+ N E + ++ + + E+ + + ++ +I Y D
Sbjct: 66 SDQENWDEVDSYLAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDG 125
Query: 150 YAGEENKSSANKCLIKIAN-----YSALTDHLDKA 179
+ + K + KI + L + ++
Sbjct: 126 LVNSDAQ----KTVKKIIDQEKEHLRKLLEMKRES 156
>1r57_A Conserved hypothetical protein; GCN5, N-acetyltransferase,
structural genomics, PSI, protein structure initiative;
NMR {Staphylococcus aureus} SCOP: d.108.1.1 PDB: 2h5m_A*
Length = 102
Score = 25.1 bits (55), Expect = 8.9
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 106 VEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDH 142
+EI +F + + +AEI + +++ E IDH
Sbjct: 4 LEIKQGENKFYIGDDENNALAEITYRFVDNNEINIDH 40
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane,
phosphoprotein, nucleotide-binding, alternative
splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Length = 428
Score = 25.8 bits (56), Expect = 9.1
Identities = 17/127 (13%), Positives = 39/127 (30%), Gaps = 14/127 (11%)
Query: 69 LHLKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAE- 127
+H+KN + +A +C+V AE + + T ++ E
Sbjct: 20 IHVKNGDLSEAAMCYVHVTALV-----AEYLTRKGVFRQGCTAFRVITPNIDEEASMMED 74
Query: 128 -IYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIA-------NYSALTDHLDKA 179
+ +++ ++ + AD E I ++ L D
Sbjct: 75 VGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTL 134
Query: 180 IKLYEQL 186
+ Y ++
Sbjct: 135 HRAYSKV 141
>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration
switch protein, hydrolase ACTI lyase; 2.20A {Vibrio
vulnificus} PDB: 3our_A
Length = 415
Score = 25.7 bits (56), Expect = 9.9
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 115 FIMVAKHHENIAEIYEKELEDQEKAIDHYQHAADCYA 151
+ + H+ A E A + A+ CY+
Sbjct: 102 WTRLGMEHQKRAGEMTNE-----AASEALFSASLCYS 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.370
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,829,318
Number of extensions: 168298
Number of successful extensions: 1040
Number of sequences better than 10.0: 1
Number of HSP's gapped: 789
Number of HSP's successfully gapped: 243
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.5 bits)