RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5288
(186 letters)
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 88.5 bits (218), Expect = 4e-22
Identities = 66/182 (36%), Positives = 103/182 (56%), Gaps = 4/182 (2%)
Query: 8 ARQLVAEAEKKISSSSKGFFSQFTGGN--KTDEAIDLYVRAGNLFKLGKKWNDGGNAFLQ 65
+L+ AEKK SS GF F+G + K +EA DL V+A +++L K+ N G++FL+
Sbjct: 4 PVELLKRAEKKGVPSS-GFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLK 62
Query: 66 AGTLHLKNNNKHDAGLCFVDAANCYK-KSNPAEAIKAIERAVEIHTDMGRFIMVAKHHEN 124
A K N+ +AG +V+A C+K N A+ ++E A++I T G+F A
Sbjct: 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122
Query: 125 IAEIYEKELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYE 184
+ EI E +L D KAID Y+ A + YA +++ + +NKC IK A+ AL +A +Y
Sbjct: 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS 182
Query: 185 QL 186
+L
Sbjct: 183 KL 184
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 33.7 bits (76), Expect = 0.007
Identities = 29/151 (19%), Positives = 46/151 (30%), Gaps = 12/151 (7%)
Query: 38 EAIDLYVRAGNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKSNPAE 97
EAI L+ W +AF + +CF N E
Sbjct: 4 EAISLWNEGVLAADKKD-WKGALDAFSAV--------QDPHSRICFNIGCMYTILKNMTE 54
Query: 98 AIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDH---YQHAADCYAGEE 154
A KA R++ + E Y+ ++D ++A+ Q G +
Sbjct: 55 AEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 114
Query: 155 NKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
K A + L IA A + KA +
Sbjct: 115 FKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 145
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 31.2 bits (70), Expect = 0.054
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 86 AANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH 145
N + +A++ + A++ A + E+ D E+A +
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKD------ASLRSSFIELL-CIDGDFERADEQLMQ 55
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
{Escherichia coli [TaxId: 562]}
Length = 366
Score = 28.3 bits (61), Expect = 0.52
Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 3/115 (2%)
Query: 71 LKNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYE 130
K ++ + V + A A + + F+ NIA
Sbjct: 205 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL--QGQWRNIARAQI 262
Query: 131 KELEDQEKAIDHYQHAADCYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
L + E A + + S N+ L+ + A ++
Sbjct: 263 L-LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 316
Score = 26.0 bits (55), Expect = 3.1
Identities = 9/101 (8%), Positives = 27/101 (26%), Gaps = 1/101 (0%)
Query: 47 GNLFKLGKKWNDGGNAFLQAGTLHLKNNNKHDAGLCFVDAANCYKKS-NPAEAIKAIERA 105
L ++ + D + Y ++ ++A + + A
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317
Query: 106 VEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHA 146
+++ G E +A+ + ++ A
Sbjct: 318 LKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRA 358
>d2cyya2 d.58.4.2 (A:65-150) Putative transcriptional regulator
PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 86
Score = 25.1 bits (55), Expect = 2.4
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 96 AEAIKAIERAVEIHTDMGRF----IMVAKHHENIAEIYEK 131
A + VE++ G + + K+ E + +
Sbjct: 20 ASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDL 59
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 25.8 bits (55), Expect = 3.7
Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 16/133 (12%)
Query: 34 NKTDEAIDLYVRAGNLF-KLGKKWNDGGNAFLQAGTLH--------LKNNNKHDAGLCFV 84
D AID Y RA L + + NA + G++ A
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310
Query: 85 DAANCYKKSNPAEAIKAIERAVEIHTD-------MGRFIMVAKHHENIAEIYEKELEDQE 137
A ++ N EA++ +A+E+ + + + + Y++ +
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
Query: 138 KAIDHYQHAADCY 150
D Y + +
Sbjct: 371 TFADAYSNMGNTL 383
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 25.9 bits (55), Expect = 3.7
Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 7/79 (8%)
Query: 72 KNNNKHDAGLCFVDAANCYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEK 131
+ N D F + ++ + A+ E AV+ + + +
Sbjct: 12 EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH------MEAWQYLGTTQ-A 64
Query: 132 ELEDQEKAIDHYQHAADCY 150
E E + AI + +
Sbjct: 65 ENEQELLAISALRRCLELK 83
>d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 80
Score = 24.1 bits (52), Expect = 4.3
Identities = 8/50 (16%), Positives = 20/50 (40%)
Query: 96 AEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQH 145
AE +K + E++ G +++A E + + ++ I+
Sbjct: 20 AEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISNKIGKIEGVTK 69
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 24.8 bits (53), Expect = 4.8
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 89 CYKKSNPAEAIKAIERAVEIHTDMGRFIMVAKHHENIAEIYEKELEDQEKAIDHYQHAAD 148
YKK + A+K ++A E+ +I Y K E EKAI+ + +
Sbjct: 14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE 73
Query: 149 CYAGEENKSSANKCLIKIANYSALTDHLDKAIKLYEQ 185
Y K +I N + AI Y +
Sbjct: 74 DYRQI------AKAYARIGNSYFKEEKYKDAIHFYNK 104
>d2nnua1 b.91.1.1 (A:1-200) E2 regulatory, transactivation domain
{Human papillomavirus type 16 [TaxId: 333760]}
Length = 200
Score = 25.0 bits (55), Expect = 5.8
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 123 ENIAEIYEKELEDQEKAIDHYQH 145
+ I YE + D ID+++H
Sbjct: 13 DKILTHYENDSTDLRDHIDYWKH 35
>d1tueb_ b.91.1.1 (B:) E2 regulatory, transactivation domain {Human
papillomavirus type 18 [TaxId: 333761]}
Length = 194
Score = 24.6 bits (54), Expect = 6.6
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 123 ENIAEIYEKELEDQEKAIDHYQH 145
+ I + YE + +D + I ++Q
Sbjct: 18 DKIIDHYENDSKDIDSQIQYWQL 40
>d1r6na_ b.91.1.1 (A:) E2 regulatory, transactivation domain {Human
papillomavirus type 11 [TaxId: 10580]}
Length = 196
Score = 24.6 bits (54), Expect = 6.7
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 123 ENIAEIYEKELEDQEKAIDHYQH 145
+ + E+YE+ D K I H++
Sbjct: 13 DQLLELYEENSIDIHKHIMHWKC 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.370
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 667,026
Number of extensions: 30120
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 53
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.2 bits)