BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5289
(813 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|A Chain A, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8F|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
pdb|3THW|A Chain A, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|A Chain A, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|A Chain A, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|A Chain A, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 934
Score = 566 bits (1459), Expect = e-161, Method: Compositional matrix adjust.
Identities = 328/870 (37%), Positives = 486/870 (55%), Gaps = 106/870 (12%)
Query: 3 FYLFF--FPQKSKTTIRFFNRVEFYCVHGEDAELIQRKS-NVVYLVKTMGQKD-KTLETV 58
F FF P+K TT+R F+R +FY HGEDA L R+ ++K MG K L++V
Sbjct: 19 FVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSV 78
Query: 59 LVNK-------------------------------------------SNLSCFSHILCVI 75
+++K NLS F IL
Sbjct: 79 VLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAYKASPGNLSQFEDILFGN 138
Query: 76 SEDKTLETVL---------TNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKE 126
++ V+ VGV VD +K + E PD+D +SNLEA+++Q PKE
Sbjct: 139 NDMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKE 198
Query: 127 CLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLL 186
C+LP + K+ I+ R + +T RKK +FS +D+ QD+NRL++ E N+ +L
Sbjct: 199 CVLPGGETAGDMGKLRQIIQRGGILITERKKADFSTKDIYQDLNRLLKGKKGEQMNSAVL 258
Query: 187 PEMCLTTATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGS 246
PEM A L ++I +LEL++++ N QF + + D+S+Y+ + A + +L++ QGS
Sbjct: 259 PEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLF--QGS 316
Query: 247 TSAQT-YDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNL 305
T SL +L++C+TPQG RL+ QW+KQPL D + I ER V V + E R L
Sbjct: 317 VEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTL 376
Query: 306 HEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILES-------LVQNVE 358
E LR PD+ LA + R+ A L+DCYR+Y+G++QLP +I LE L+ V
Sbjct: 377 QEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVF 436
Query: 359 ASNLNTILSSLQSLKMMDRKDAVMD-----------------------------KMKEYL 389
+ L + S + M MD KM+ L
Sbjct: 437 VTPLTDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTL 496
Query: 390 ESTARRLNLVADKTIKLENSPQ-GFAYRITMKLNNSI--DDRYTILDTVRGGVRFQDDRL 446
S AR L L K IKL++S Q G+ +R+T K + + ++ +D + GV+F + +L
Sbjct: 497 ISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKL 556
Query: 447 ATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAP 506
+ N +Y + EYE Q +IV+E++ IS+GY + + L+DVLAQ D +VSF+ S AP
Sbjct: 557 TSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAP 616
Query: 507 KPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKS 566
PYVRP + G G ++L RH VE+Q +++IPNDVYF+ + F+++TGPNMGGKS
Sbjct: 617 VPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKS 676
Query: 567 TYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI 626
TYIR GV V +AQIGCFVPC+SA +S+VD I RVGA DSQ +G+STFM EM ETA+++
Sbjct: 677 TYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASIL 736
Query: 627 KKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPT 686
+ T++SL+IIDELGRGTST+DGFG+A +I+ +A+ F +FATHFHE+ L+ IPT
Sbjct: 737 RSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPT 796
Query: 687 FRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDL---MKEYEY 743
N+ V+AL E+ L +LYQVK G C +S+G+H A++A +P+ ++E A+ ++E++Y
Sbjct: 797 VNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQY 856
Query: 744 -----SLDTKTPSGDETNNREEEYFKTVQE 768
D P+ + E+ K +QE
Sbjct: 857 IGESQGYDIMEPAAKKCYLEREQGEKIIQE 886
>pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
Length = 934
Score = 562 bits (1449), Expect = e-160, Method: Compositional matrix adjust.
Identities = 327/870 (37%), Positives = 485/870 (55%), Gaps = 106/870 (12%)
Query: 3 FYLFF--FPQKSKTTIRFFNRVEFYCVHGEDAELIQRKS-NVVYLVKTMGQKD-KTLETV 58
F FF P+K TT+R F+R + Y HGEDA L R+ ++K MG K L++V
Sbjct: 19 FVRFFQGMPEKPTTTVRLFDRGDAYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSV 78
Query: 59 LVNK-------------------------------------------SNLSCFSHILCVI 75
+++K NLS F IL
Sbjct: 79 VLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAYKASPGNLSQFEDILFGN 138
Query: 76 SEDKTLETVL---------TNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKE 126
++ V+ VGV VD +K + E PD+D +SNLEA+++Q PKE
Sbjct: 139 NDMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKE 198
Query: 127 CLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLL 186
C+LP + K+ I+ R + +T RKK +FS +D+ QD+NRL++ E N+ +L
Sbjct: 199 CVLPGGETAGDMGKLRQIIQRGGILITERKKADFSTKDIYQDLNRLLKGKKGEQMNSAVL 258
Query: 187 PEMCLTTATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGS 246
PEM A L ++I +LEL++++ N QF + + D+S+Y+ + A + +L++ QGS
Sbjct: 259 PEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLF--QGS 316
Query: 247 TSAQT-YDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNL 305
T SL +L++C+TPQG RL+ QW+KQPL D + I ER V V + E R L
Sbjct: 317 VEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTL 376
Query: 306 HEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILES-------LVQNVE 358
E LR PD+ LA + R+ A L+DCYR+Y+G++QLP +I LE L+ V
Sbjct: 377 QEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVF 436
Query: 359 ASNLNTILSSLQSLKMMDRKDAVMD-----------------------------KMKEYL 389
+ L + S + M MD KM+ L
Sbjct: 437 VTPLTDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTL 496
Query: 390 ESTARRLNLVADKTIKLENSPQ-GFAYRITMKLNNSI--DDRYTILDTVRGGVRFQDDRL 446
S AR L L K IKL++S Q G+ +R+T K + + ++ +D + GV+F + +L
Sbjct: 497 ISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKL 556
Query: 447 ATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAP 506
+ N +Y + EYE Q +IV+E++ IS+GY + + L+DVLAQ D +VSF+ S AP
Sbjct: 557 TSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAP 616
Query: 507 KPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKS 566
PYVRP + G G ++L RH VE+Q +++IPNDVYF+ + F+++TGPNMGGKS
Sbjct: 617 VPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKS 676
Query: 567 TYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI 626
TYIR GV V +AQIGCFVPC+SA +S+VD I RVGA DSQ +G+STFM EM ETA+++
Sbjct: 677 TYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASIL 736
Query: 627 KKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPT 686
+ T++SL+IIDELGRGTST+DGFG+A +I+ +A+ F +FATHFHE+ L+ IPT
Sbjct: 737 RSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPT 796
Query: 687 FRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDL---MKEYEY 743
N+ V+AL E+ L +LYQVK G C +S+G+H A++A +P+ ++E A+ ++E++Y
Sbjct: 797 VNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQY 856
Query: 744 -----SLDTKTPSGDETNNREEEYFKTVQE 768
D P+ + E+ K +QE
Sbjct: 857 IGESQGYDIMEPAAKKCYLEREQGEKIIQE 886
>pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex
pdb|1NNE|B Chain B, Crystal Structure Of The Muts-adpbef3-dna Complex
Length = 765
Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 163/540 (30%), Positives = 265/540 (49%), Gaps = 47/540 (8%)
Query: 223 DYSKYVHMSSAVMSSLHVL-PQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKD 281
D ++ + A + +L V P +G D+L +LD RT G RLL W++ PL D
Sbjct: 245 DPGAFMRLPEATLRALEVFEPLRGQ------DTLFSVLDETRTAPGRRLLQSWLRHPLLD 298
Query: 282 LDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVS 341
+ R V V R + R L D++ LA R+ +A KD + +
Sbjct: 299 RGPLEARLDRVEGFVREGALREGVRRLLYR-LADLERLATRLELGRASPKDLGALRRSLQ 357
Query: 342 QLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRK-----------------DAVMDK 384
LP+L ++L + V +L+ + L++ + D DA+
Sbjct: 358 ILPELRALLG---EEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAA 414
Query: 385 MKE----YLESTARRLNLVADKTIKLE-NSPQGFAYRITMKLNNSIDDRYTILDTVRGGV 439
+E +LE R T+K+ N+ G+ +T + Y + T++
Sbjct: 415 HREGVAYFLELEERERERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQ 474
Query: 440 RFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFS 499
R+ + + ++ ++ + EV + + L + + +LA+ DV +
Sbjct: 475 RYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAA-- 532
Query: 500 IASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTG 559
+A YVRP L + RHP+VE + ++PND+ L+TG
Sbjct: 533 LAEVAVRYGYVRPRF----GDRLQIRAGRHPVVERR--TEFVPNDLEMAH---ELVLITG 583
Query: 560 PNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEM 619
PNM GKST++R + LAQ+G FVP + A + + D I+TR+GA+D G STFM+EM
Sbjct: 584 PNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEM 643
Query: 620 KETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL 679
+E A ++K+ TENSLV++DE+GRGTS+ DG +A ++A L R+ +TLFATH+ E+
Sbjct: 644 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEAL-HERRAYTLFATHYFELTA 702
Query: 680 LSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMK 739
L +P +N+ V+A E+ LV +QV PG KSYGV A MAG P++++ +AR L++
Sbjct: 703 LG--LPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQ 760
>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
pdb|1WB9|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 156/531 (29%), Positives = 264/531 (49%), Gaps = 63/531 (11%)
Query: 253 DSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRG 312
++L +LD TP G R+L +W+ P++D ++ER + L + T + LR
Sbjct: 289 NTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPV----LRQ 344
Query: 313 LPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSL 372
+ D++ + R+ + A +D R+ QLP+L + LE+ V + L + L
Sbjct: 345 VGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLET-VDSAPVQALREKMGEFAEL 403
Query: 373 K---------------------------MMDRKDAVMDKMKEYLESTARRLNLVAD-KTI 404
+ +D A+ D +YLE R T+
Sbjct: 404 RDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTL 463
Query: 405 KLE-NSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRF-------QDDRLATANTQYQAI 456
K+ N+ G+ +I+ ++ Y T++ R+ +D++ T+ + A+
Sbjct: 464 KVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALAL 523
Query: 457 QREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLV-----SFSIASTCAPKPYVR 511
+++ + EE+ + + + L Q + LA+ DVLV ++++ TC P +
Sbjct: 524 EKQ-------LYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTC-PTFIDK 575
Query: 512 PCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRS 571
P ++ + + RHP+VE +I N + S + ++TGPNMGGKSTY+R
Sbjct: 576 PGIR--------ITEGRHPVVEQVLNEPFIANPLNL-SPQRRMLIITGPNMGGKSTYMRQ 626
Query: 572 IGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTE 631
+ +A IG +VP I +D+IFTRVGAAD G STFM+EM ETA ++ TE
Sbjct: 627 TALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATE 686
Query: 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQ 691
SLV++DE+GRGTST+DG +A + A LA+ + TLFATH+ E+ L + NV
Sbjct: 687 YSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 746
Query: 692 VSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
+ ALE D + ++ V+ G+ KSYG+ A +AG P++++++AR ++E E
Sbjct: 747 LDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 797
>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH5|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH6|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH6|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH7|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH7|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH8|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1OH8|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1W7A|A Chain A, Atp Bound Muts
pdb|1W7A|B Chain B, Atp Bound Muts
pdb|2WTU|A Chain A, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch.
pdb|2WTU|B Chain B, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch
Length = 800
Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 156/531 (29%), Positives = 264/531 (49%), Gaps = 63/531 (11%)
Query: 253 DSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRG 312
++L +LD TP G R+L +W+ P++D ++ER + L + T + LR
Sbjct: 289 NTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPV----LRQ 344
Query: 313 LPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSL 372
+ D++ + R+ + A +D R+ QLP+L + LE+ V + L + L
Sbjct: 345 VGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLET-VDSAPVQALREKMGEFAEL 403
Query: 373 K---------------------------MMDRKDAVMDKMKEYLESTARRLNLVAD-KTI 404
+ +D A+ D +YLE R T+
Sbjct: 404 RDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTL 463
Query: 405 KLE-NSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRF-------QDDRLATANTQYQAI 456
K+ N+ G+ +I+ ++ Y T++ R+ +D++ T+ + A+
Sbjct: 464 KVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALAL 523
Query: 457 QREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLV-----SFSIASTCAPKPYVR 511
+++ + EE+ + + + L Q + LA+ DVLV ++++ TC P +
Sbjct: 524 EKQ-------LYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTC-PTFIDK 575
Query: 512 PCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRS 571
P ++ + + RHP+VE +I N + S + ++TGPNMGGKSTY+R
Sbjct: 576 PGIR--------ITEGRHPVVEQVLNEPFIANPLNL-SPQRRMLIITGPNMGGKSTYMRQ 626
Query: 572 IGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTE 631
+ +A IG +VP I +D+IFTRVGAAD G STFM+EM ETA ++ TE
Sbjct: 627 TALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATE 686
Query: 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQ 691
SLV++DE+GRGTST+DG +A + A LA+ + TLFATH+ E+ L + NV
Sbjct: 687 YSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 746
Query: 692 VSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
+ ALE D + ++ V+ G+ KSYG+ A +AG P++++++AR ++E E
Sbjct: 747 LDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 797
>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
pdb|1WBD|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 156/531 (29%), Positives = 264/531 (49%), Gaps = 63/531 (11%)
Query: 253 DSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRG 312
++L +LD TP G R+L +W+ P++D ++ER + L + T + LR
Sbjct: 289 NTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPV----LRQ 344
Query: 313 LPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSL 372
+ D++ + R+ + A +D R+ QLP+L + LE+ V + L + L
Sbjct: 345 VGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLET-VDSAPVQALREKMGEFAEL 403
Query: 373 K---------------------------MMDRKDAVMDKMKEYLESTARRLNLVAD-KTI 404
+ +D A+ D +YLE R T+
Sbjct: 404 RDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTL 463
Query: 405 KLE-NSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRF-------QDDRLATANTQYQAI 456
K+ N+ G+ +I+ ++ Y T++ R+ +D++ T+ + A+
Sbjct: 464 KVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALAL 523
Query: 457 QREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLV-----SFSIASTCAPKPYVR 511
+++ + EE+ + + + L Q + LA+ DVLV ++++ TC P +
Sbjct: 524 EKQ-------LYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTC-PTFIDK 575
Query: 512 PCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRS 571
P ++ + + RHP+VE +I N + S + ++TGPNMGGKSTY+R
Sbjct: 576 PGIR--------ITEGRHPVVEQVLNEPFIANPLNL-SPQRRMLIITGPNMGGKSTYMRQ 626
Query: 572 IGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTE 631
+ +A IG +VP I +D+IFTRVGAAD G STFM+EM ETA ++ TE
Sbjct: 627 TALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATE 686
Query: 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQ 691
SLV++DE+GRGTST+DG +A + A LA+ + TLFATH+ E+ L + NV
Sbjct: 687 YSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 746
Query: 692 VSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
+ ALE D + ++ V+ G+ KSYG+ A +AG P++++++AR ++E E
Sbjct: 747 LDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 797
>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
pdb|1WBB|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 156/531 (29%), Positives = 264/531 (49%), Gaps = 63/531 (11%)
Query: 253 DSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRG 312
++L +LD TP G R+L +W+ P++D ++ER + L + T + LR
Sbjct: 289 NTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPV----LRQ 344
Query: 313 LPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSL 372
+ D++ + R+ + A +D R+ QLP+L + LE+ V + L + L
Sbjct: 345 VGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLET-VDSAPVQALREKMGEFAEL 403
Query: 373 K---------------------------MMDRKDAVMDKMKEYLESTARRLNLVAD-KTI 404
+ +D A+ D +YLE R T+
Sbjct: 404 RDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTL 463
Query: 405 KLE-NSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRF-------QDDRLATANTQYQAI 456
K+ N+ G+ +I+ ++ Y T++ R+ +D++ T+ + A+
Sbjct: 464 KVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALAL 523
Query: 457 QREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLV-----SFSIASTCAPKPYVR 511
+++ + EE+ + + + L Q + LA+ DVLV ++++ TC P +
Sbjct: 524 EKQ-------LYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTC-PTFIDK 575
Query: 512 PCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRS 571
P ++ + + RHP+VE +I N + S + ++TGPNMGGKSTY+R
Sbjct: 576 PGIR--------ITEGRHPVVEQVLNEPFIANPLNL-SPQRRMLIITGPNMGGKSTYMRQ 626
Query: 572 IGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTE 631
+ +A IG +VP I +D+IFTRVGAAD G STFM+EM ETA ++ TE
Sbjct: 627 TALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATE 686
Query: 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQ 691
SLV++DE+GRGTST+DG +A + A LA+ + TLFATH+ E+ L + NV
Sbjct: 687 YSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 746
Query: 692 VSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
+ ALE D + ++ V+ G+ KSYG+ A +AG P++++++AR ++E E
Sbjct: 747 LDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 797
>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
pdb|3K0S|B Chain B, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
Length = 799
Score = 225 bits (574), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 155/531 (29%), Positives = 264/531 (49%), Gaps = 63/531 (11%)
Query: 253 DSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRG 312
++L +LD TP G R+L +W+ P++D ++ER + L + T + LR
Sbjct: 288 NTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPV----LRQ 343
Query: 313 LPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSL 372
+ D++ + R+ + A +D R+ QLP+L + LE+ V + L + L
Sbjct: 344 VGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLET-VDSAPVQALREKMGEFAEL 402
Query: 373 K---------------------------MMDRKDAVMDKMKEYLESTARRLNLVAD-KTI 404
+ +D A+ D +YLE R T+
Sbjct: 403 RDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTL 462
Query: 405 KLE-NSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRF-------QDDRLATANTQYQAI 456
K+ N+ G+ +I+ ++ Y T++ R+ +D++ T+ + A+
Sbjct: 463 KVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALAL 522
Query: 457 QREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLV-----SFSIASTCAPKPYVR 511
+++ + EE+ + + + L Q + LA+ DVLV ++++ TC P +
Sbjct: 523 EKQ-------LYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTC-PTFIDK 574
Query: 512 PCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRS 571
P ++ + + RHP+VE +I N + S + ++TGPNMGGKSTY+R
Sbjct: 575 PGIR--------ITEGRHPVVEQVLNEPFIANPLNL-SPQRRMLIITGPNMGGKSTYMRQ 625
Query: 572 IGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTE 631
+ +A IG +VP I +D+IFTRVGAAD G STFM+EM ETA ++ TE
Sbjct: 626 TALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATE 685
Query: 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQ 691
SLV+++E+GRGTST+DG +A + A LA+ + TLFATH+ E+ L + NV
Sbjct: 686 YSLVLMNEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 745
Query: 692 VSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
+ ALE D + ++ V+ G+ KSYG+ A +AG P++++++AR ++E E
Sbjct: 746 LDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 796
>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
pdb|1NG9|B Chain B, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
Length = 800
Score = 224 bits (571), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 155/531 (29%), Positives = 263/531 (49%), Gaps = 63/531 (11%)
Query: 253 DSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRG 312
++L +LD TP G R+L +W+ P++D ++ER + L + T + LR
Sbjct: 289 NTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPV----LRQ 344
Query: 313 LPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSL 372
+ D++ + R+ + A +D R+ QLP+L + LE+ V + L + L
Sbjct: 345 VGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLET-VDSAPVQALREKMGEFAEL 403
Query: 373 K---------------------------MMDRKDAVMDKMKEYLESTARRLNLVAD-KTI 404
+ +D A+ D +YLE R T+
Sbjct: 404 RDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTL 463
Query: 405 KLE-NSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRF-------QDDRLATANTQYQAI 456
K+ N+ G+ +I+ ++ Y T++ R+ +D++ T+ + A+
Sbjct: 464 KVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALAL 523
Query: 457 QREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLV-----SFSIASTCAPKPYVR 511
+++ + EE+ + + + L Q + LA+ DVLV ++++ TC P +
Sbjct: 524 EKQ-------LYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTC-PTFIDK 575
Query: 512 PCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRS 571
P ++ + + RHP+VE +I N + S + ++TGPNMGGKSTY+R
Sbjct: 576 PGIR--------ITEGRHPVVEQVLNEPFIANPLNL-SPQRRMLIITGPNMGGKSTYMRQ 626
Query: 572 IGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTE 631
+ +A IG +VP I +D+IFTRVGAAD G STFM+EM ETA ++ TE
Sbjct: 627 TALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATE 686
Query: 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQ 691
SLV++DE+G GTST+DG +A + A LA+ + TLFATH+ E+ L + NV
Sbjct: 687 YSLVLMDEIGAGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 746
Query: 692 VSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
+ ALE D + ++ V+ G+ KSYG+ A +AG P++++++AR ++E E
Sbjct: 747 LDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 797
>pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
Length = 649
Score = 221 bits (562), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 156/532 (29%), Positives = 254/532 (47%), Gaps = 47/532 (8%)
Query: 223 DYSKYVHMSSAVMSSLHVL-PQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKD 281
D + + A + +L V P +G D+L +LD RT G RLL W++ PL D
Sbjct: 129 DPGAFXRLPEATLRALEVFEPLRGQ------DTLFSVLDETRTAPGRRLLQSWLRHPLLD 182
Query: 282 LDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVS 341
+ R V V R + R L D++ LA R+ +A KD + +
Sbjct: 183 RGPLEARLDRVEGFVREGALREGVRRLLYR-LADLERLATRLELGRASPKDLGALRRSLQ 241
Query: 342 QLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRK-----------------DAVMDK 384
LP+L ++L + V +L+ + L++ + D DA+
Sbjct: 242 ILPELRALLG---EEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAA 298
Query: 385 MKE----YLESTARRLNLVADKTIKLE-NSPQGFAYRITMKLNNSIDDRYTILDTVRGGV 439
+E +LE R T+K+ N+ G+ +T + Y + T++
Sbjct: 299 HREGVAYFLELEERERERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQ 358
Query: 440 RFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFS 499
R+ + + ++ ++ + EV + + L + + +LA+ DV +
Sbjct: 359 RYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAA-- 416
Query: 500 IASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTG 559
+A YVRP L + RHP+VE + ++PND+ L+TG
Sbjct: 417 LAEVAVRYGYVRPRF----GDRLQIRAGRHPVVERR--TEFVPNDLEXAH---ELVLITG 467
Query: 560 PNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEM 619
PN GKST++R + LAQ+G FVP + A + + D I+TR+GA+D G STF +E
Sbjct: 468 PNXAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFXVEX 527
Query: 620 KETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL 679
+E A ++K+ TENSLV++DE+GRGTS+ DG +A ++A L R+ +TLFATH+ E+
Sbjct: 528 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEAL-HERRAYTLFATHYFELTA 586
Query: 680 LSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDML 731
L +P +N+ V+A E+ LV +QV PG KSYGV A AG P++++
Sbjct: 587 LG--LPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAXAGLPKEVV 636
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
Length = 765
Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 156/532 (29%), Positives = 253/532 (47%), Gaps = 47/532 (8%)
Query: 223 DYSKYVHMSSAVMSSLHVL-PQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKD 281
D + + A + +L V P +G D+L +LD RT G RLL W++ PL D
Sbjct: 245 DPGAFXRLPEATLRALEVFEPLRGQ------DTLFSVLDETRTAPGRRLLQSWLRHPLLD 298
Query: 282 LDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVS 341
+ R V V R + R L D++ LA R+ +A KD + +
Sbjct: 299 RGPLEARLDRVEGFVREGALREGVRRLLYR-LADLERLATRLELGRASPKDLGALRRSLQ 357
Query: 342 QLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRK-----------------DAVMDK 384
LP+L ++L + V +L+ + L++ + D DA+
Sbjct: 358 ILPELRALLG---EEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAA 414
Query: 385 MKE----YLESTARRLNLVADKTIKLE-NSPQGFAYRITMKLNNSIDDRYTILDTVRGGV 439
+E +LE R T+K+ N+ G+ +T + Y + T++
Sbjct: 415 HREGVAYFLELEERERERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQ 474
Query: 440 RFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFS 499
R+ + ++ ++ + EV + + L + + +LA+ DV +
Sbjct: 475 RYTLPEXKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAA-- 532
Query: 500 IASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTG 559
+A YVRP L + RHP+VE + ++PND+ L+TG
Sbjct: 533 LAEVAVRYGYVRPRF----GDRLQIRAGRHPVVERR--TEFVPNDLEXAH---ELVLITG 583
Query: 560 PNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEM 619
PN GKST++R + LAQ+G FVP + A + + D I+TR+GA+D G STF +E
Sbjct: 584 PNXAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFXVEX 643
Query: 620 KETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL 679
+E A ++K+ TENSLV++DE+GRGTS+ DG +A ++A L R+ +TLFATH+ E+
Sbjct: 644 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEAL-HERRAYTLFATHYFELTA 702
Query: 680 LSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDML 731
L +P +N+ V+A E+ LV +QV PG KSYGV A AG P++++
Sbjct: 703 LG--LPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAXAGLPKEVV 752
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 156/532 (29%), Positives = 253/532 (47%), Gaps = 47/532 (8%)
Query: 223 DYSKYVHMSSAVMSSLHVL-PQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKD 281
D + + A + +L V P +G D+L +LD RT G RLL W++ PL D
Sbjct: 245 DPGAFXRLPEATLRALEVFEPLRGQ------DTLFSVLDETRTAPGRRLLQSWLRHPLLD 298
Query: 282 LDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVS 341
+ R V V R + R L D++ LA R+ +A KD + +
Sbjct: 299 RGPLEARLDRVEGFVREGALREGVRRLLYR-LADLERLATRLELGRASPKDLGALRRSLQ 357
Query: 342 QLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRK-----------------DAVMDK 384
LP+L ++L + V +L+ + L++ + D DA+
Sbjct: 358 ILPELRALLG---EEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAA 414
Query: 385 MKE----YLESTARRLNLVADKTIKLE-NSPQGFAYRITMKLNNSIDDRYTILDTVRGGV 439
+E +LE R T+K+ N+ G+ +T + Y + T++
Sbjct: 415 HREGVAYFLELEERERERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQ 474
Query: 440 RFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFS 499
R+ + ++ ++ + EV + + L + + +LA+ DV +
Sbjct: 475 RYTLPEXKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAA-- 532
Query: 500 IASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTG 559
+A YVRP L + RHP+VE + ++PND+ L+TG
Sbjct: 533 LAEVAVRYGYVRPRF----GDRLQIRAGRHPVVERR--TEFVPNDLEXAH---ELVLITG 583
Query: 560 PNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEM 619
PN GKST++R + LAQ+G FVP + A + + D I+TR+GA+D G STF +E
Sbjct: 584 PNXAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFXVEX 643
Query: 620 KETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL 679
+E A ++K+ TENSLV++DE+GRGTS+ DG +A ++A L R+ +TLFATH+ E+
Sbjct: 644 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEAL-HERRAYTLFATHYFELTA 702
Query: 680 LSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDML 731
L +P +N+ V+A E+ LV +QV PG KSYGV A AG P++++
Sbjct: 703 LG--LPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAXAGLPKEVV 752
>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 918
Score = 219 bits (557), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 209/762 (27%), Positives = 343/762 (45%), Gaps = 109/762 (14%)
Query: 69 SHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYY-----SNLEAIIVQKS 123
S++LC ISE+K E V G + + + GE+ D + S LE +
Sbjct: 150 SYLLC-ISENK--ENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQ 206
Query: 124 PKECLLPA------EYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDD 177
P E LLP+ E L + DR +V E+S Q V D
Sbjct: 207 PVELLLPSALSEQTEALIHRATSVSVQDDRIRVERMDNIYFEYSHA--FQAVTEFYAKDT 264
Query: 178 SELKNARLLPEMC-LTTATHC-LRSLINYLELMNNE------DNMNQFSIHSIDYSKYVH 229
++K ++++ + L C L ++I YL+ N E +N Q S +++
Sbjct: 265 VDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLS----SKMEFMT 320
Query: 230 MSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERH 289
++ + +L +L Q T +T SLL +LD +T G R L +W+ QPL L I R
Sbjct: 321 INGTTLRNLEIL--QNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARL 378
Query: 290 AAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQL-PKLIS 348
AV+ ++++ + E LR LPD++ I KK ++ + + + + L + +
Sbjct: 379 DAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQA 438
Query: 349 ILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKT----- 403
I+ ++ ++++ L T++ + L + ++ YL+ + V DKT
Sbjct: 439 IIPAVNSHIQSDLLRTVILEIPEL---------LSPVEHYLKILNEQAAKVGDKTELFKD 489
Query: 404 -------IKLENSPQGFAYRITMKLN------NSIDDRYTILDTVRGGVRFQDDRLATAN 450
K ++ QG I M L + +Y + + ++ ++
Sbjct: 490 LSDFPLIKKRKDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIP 549
Query: 451 TQY------QAIQREYETHQQSIVEE-----------VIGISAGYTQTLNQLSDV----- 488
T + +A+ R H IVE V+ SA + L + S+
Sbjct: 550 TDWVKVGSTKAVSR---FHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLC 606
Query: 489 -----LAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVS--YI 541
LA D + FS+A Y RP ++ +V+ RHP++++ G Y+
Sbjct: 607 KAVHHLATVDCI--FSLAKVAKQGDYCRPTVQE--ERKIVIKNGRHPVIDVLLGEQDQYV 662
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN+ ++TGPNMGGKS+YI+ + + +AQIG +VP + ATI +VD IFTR
Sbjct: 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTR 722
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA 661
+GAAD+ Y+G STFM E+ +TA +I+K T SLVI+DELGRGTST DG +A +
Sbjct: 723 MGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFI 782
Query: 662 SHRQPFTLFATHFHEIALLSR--------------VIPTFRNVQVSALEQ-EDNLVLLYQ 706
+ TLF TH+ + L + V + A EQ D + LYQ
Sbjct: 783 RDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQ 842
Query: 707 VKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTK 748
+ G +SYG++ AK+A P ++L++A KE E ++TK
Sbjct: 843 ITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTK 884
>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
pdb|1E3M|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
Length = 800
Score = 211 bits (537), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 153/531 (28%), Positives = 253/531 (47%), Gaps = 63/531 (11%)
Query: 253 DSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRG 312
++L +LD TP G R L +W+ P++D ++ER + L + T + LR
Sbjct: 289 NTLASVLDCTVTPXGSRXLKRWLHXPVRDTRVLLERQQTIGALQDFTAGLQPV----LRQ 344
Query: 313 LPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSL 372
+ D++ + R+ + A +D R QLP+L + LE+ V + L L
Sbjct: 345 VGDLERILARLALRTARPRDLARXRHAFQQLPELRAQLET-VDSAPVQALREKXGEFAEL 403
Query: 373 K---------------------------MMDRKDAVMDKMKEYLESTARRLNLVAD-KTI 404
+ +D A+ D +YLE R T+
Sbjct: 404 RDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTL 463
Query: 405 KLE-NSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRF-------QDDRLATANTQYQAI 456
K+ N+ G+ +I+ ++ Y T++ R+ +D++ T+ + A+
Sbjct: 464 KVGFNAVHGYYIQISRGQSHLAPINYXRRQTLKNAERYIIPELKEYEDKVLTSKGKALAL 523
Query: 457 QREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLV-----SFSIASTCAPKPYVR 511
+++ + EE+ + + + L Q + LA+ DVLV ++++ TC P +
Sbjct: 524 EKQ-------LYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTC-PTFIDK 575
Query: 512 PCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRS 571
P ++ + + RHP+VE +I N + S + ++TGPN GGKSTY R
Sbjct: 576 PGIR--------ITEGRHPVVEQVLNEPFIANPLNL-SPQRRXLIITGPNXGGKSTYXRQ 626
Query: 572 IGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTE 631
+ A IG +VP I +D+IFTRVGAAD G STF +E ETA ++ TE
Sbjct: 627 TALIALXAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFXVEXTETANILHNATE 686
Query: 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQ 691
SLV+ DE+GRGTST+DG +A + A LA+ + TLFATH+ E+ L NV
Sbjct: 687 YSLVLXDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKXEGVANVH 746
Query: 692 VSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
+ ALE D + + V+ G+ KSYG+ A +AG P++++++AR ++E E
Sbjct: 747 LDALEHGDTIAFXHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 797
>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|B Chain B, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8E|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
pdb|2O8F|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
Length = 1022
Score = 198 bits (504), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 197/813 (24%), Positives = 335/813 (41%), Gaps = 161/813 (19%)
Query: 68 FSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSP--- 124
+S L + E + + T GV VD KF++G+ DD + S ++ P
Sbjct: 197 YSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQV 256
Query: 125 -----------------------KECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFS 161
+E L+P D + T+L+ E+
Sbjct: 257 LFEKGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLE-----------EEYF 305
Query: 162 EEDLMQDVN----RLVRFDDSELKNARLLP----EMCLTTATHC------------LRSL 201
E L + ++++ SE + L P E+ L+ C L S+
Sbjct: 306 REKLSDGIGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSM 365
Query: 202 INYLELMN-NEDNMNQFSIHSIDYSKYVHM--SSAVMSSLHVLPQQGSTSAQTYDSLLGI 258
N+ E + + D ++ +I Y M + +++L + T+ T +LL
Sbjct: 366 ANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIF--LNGTNGSTEGTLLER 423
Query: 259 LDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQS 318
+D C TP G RLL QW+ PL + AI +R A+ L+ + + E L+ LPD++
Sbjct: 424 VDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVEL-LKKLPDLER 482
Query: 319 LAMRIGRKKAGLK-----------------------DCYRVYEGVSQLPKLISILESLVQ 355
L +I + LK D EG + K+I I+E +
Sbjct: 483 LLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVAD 542
Query: 356 NVEASNLNTILSSLQSLKM----------MDRKDAVMDKMK------------------- 386
++ L ++ SLQ+ ++R D D K
Sbjct: 543 GFKSKILKQVI-SLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQ 601
Query: 387 -------------EYLESTARRLNL-------VADKTIKLENSPQGFAYRITMKLNNSID 426
EYLE R+ + +LE P+ F R ++
Sbjct: 602 ALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLE-IPENFTTR-------NLP 653
Query: 427 DRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLS 486
+ Y + T +G R+ + + + + + + +
Sbjct: 654 EEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAV 713
Query: 487 DVLAQFDVLVSFSIASTCAPKPYVRPC-MKPMGTGSLV-LNQCRHP-IVELQGGVSYIPN 543
+ +A DVL+ + S P RP + P T + L RHP I + G +IPN
Sbjct: 714 ECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPN 773
Query: 544 DVYF-------KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVD 596
D+ ++G+ LVTGPNMGGKST +R G+ +AQ+GC+VP + ++ +D
Sbjct: 774 DILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPID 833
Query: 597 QIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSI 656
++FTR+GA+D G STF +E+ ETA+++ T +SLV++DELGRGT+TFDG +A ++
Sbjct: 834 RVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAV 893
Query: 657 ARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQE------DNLVLLYQVKP 709
+ELA + TLF+TH+H + S+ + +E E + + LY+
Sbjct: 894 VKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIK 953
Query: 710 GSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
G+C KSYG + A++A PE+++++ +E+E
Sbjct: 954 GACPKSYGFNAARLANLPEEVIQKGHRKAREFE 986
>pdb|4A1N|A Chain A, Human Mitochondrial Endo-Exonuclease
Length = 335
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 3 FYLF-FFPQKSKTTIRFFNRVEFYCVH-GEDAELIQRKSNVVYLVKTMGQKDKTLETVLV 60
FYL PQ ++NR+E YC E E + S + L +T G K + ++
Sbjct: 118 FYLSNIVPQDFDNNSGYWNRIEMYCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQVI 177
Query: 61 NKSNLSCFSHILCVI 75
+ N++ SH+ VI
Sbjct: 178 GEDNVAVPSHLYKVI 192
>pdb|2PI2|A Chain A, Full-Length Replication Protein A Subunits Rpa14 And Rpa32
pdb|2PI2|B Chain B, Full-Length Replication Protein A Subunits Rpa14 And Rpa32
pdb|2PI2|C Chain C, Full-Length Replication Protein A Subunits Rpa14 And Rpa32
pdb|2PI2|D Chain D, Full-Length Replication Protein A Subunits Rpa14 And Rpa32
pdb|2Z6K|A Chain A, Crystal Structure Of Full-Length Human Rpa1432 HETERODIMER
pdb|2Z6K|B Chain B, Crystal Structure Of Full-Length Human Rpa1432 HETERODIMER
Length = 270
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 33/156 (21%)
Query: 168 DVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLIN-----YLELMNNEDNMNQFSIHSI 222
DV + V DD+ +N + PE + A H LRS N ++M ED MN+F+ H +
Sbjct: 103 DVRQWVDTDDTSSENTVVPPETYVKVAGH-LRSFQNKKSLVAFKIMPLED-MNEFTTHIL 160
Query: 223 DY-------SKYVHMSSAVMSSL--------------HVLPQQGSTSAQTYDSLLGILDR 261
+ SK SA + + +P G T AQ + +L ++
Sbjct: 161 EVINAHMVLSKANSQPSAGRAPISNPGMSEAGNFGGNSFMPANGLTVAQ--NQVLNLIKA 218
Query: 262 CRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVN 297
C P+G L Q +K LK + ++ AV+ L N
Sbjct: 219 CPRPEG--LNFQDLKNQLKHM-SVSSIKQAVDFLSN 251
>pdb|2L5S|A Chain A, Solution Structure Of The Extracellular Domain Of The
Tgf-Beta Type I Receptor
Length = 88
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 59 LVNKSNLSCFSHILCVISEDKTLETVLTNTVGVAIVDL 96
L K N +C + LC +S +T + V+ N++ +A +DL
Sbjct: 12 LCTKDNFTCVTDGLCFVSVTETTDKVIHNSMCIAEIDL 49
>pdb|3KFD|I Chain I, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific
Ligand Re And Receptor Recruitment In The Superfamily
pdb|3KFD|J Chain J, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific
Ligand Re And Receptor Recruitment In The Superfamily
pdb|3KFD|K Chain K, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific
Ligand Re And Receptor Recruitment In The Superfamily
pdb|3KFD|L Chain L, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific
Ligand Re And Receptor Recruitment In The Superfamily
Length = 85
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 59 LVNKSNLSCFSHILCVISEDKTLETVLTNTVGVAIVDL 96
L K N +C + LC +S +T + V+ N++ +A +DL
Sbjct: 10 LCTKDNFTCVTDGLCFVSVTETTDKVIHNSMCIAEIDL 47
>pdb|2PJY|C Chain C, Structural Basis For Cooperative Assembly Of The
Tgf-Beta Signaling Complex
Length = 79
Score = 29.3 bits (64), Expect = 9.3, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 59 LVNKSNLSCFSHILCVISEDKTLETVLTNTVGVAIVDL 96
L K N +C + LC +S +T + V+ N+ +A +DL
Sbjct: 8 LCTKDNFTCVTDGLCFVSVTETTDKVIHNSSCIAEIDL 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,525,037
Number of Sequences: 62578
Number of extensions: 912742
Number of successful extensions: 2609
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2542
Number of HSP's gapped (non-prelim): 39
length of query: 813
length of database: 14,973,337
effective HSP length: 107
effective length of query: 706
effective length of database: 8,277,491
effective search space: 5843908646
effective search space used: 5843908646
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)