Query psy5289
Match_columns 813
No_of_seqs 616 out of 3301
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 22:45:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0249 MutS Mismatch repair A 100.0 1E-132 3E-137 1177.1 68.6 711 4-746 11-801 (843)
2 PRK05399 DNA mismatch repair p 100.0 2E-126 5E-131 1145.2 74.1 702 3-744 12-799 (854)
3 TIGR01070 mutS1 DNA mismatch r 100.0 2E-126 3E-131 1139.8 68.8 697 3-744 5-784 (840)
4 KOG0219|consensus 100.0 2E-122 4E-127 1027.7 49.6 736 2-747 18-840 (902)
5 KOG0218|consensus 100.0 6E-105 1E-109 869.2 48.5 717 5-745 168-1031(1070)
6 KOG0217|consensus 100.0 3.4E-99 7E-104 857.4 46.0 730 2-746 251-1094(1125)
7 KOG0220|consensus 100.0 8.7E-79 1.9E-83 667.8 43.8 690 86-807 117-866 (867)
8 KOG0221|consensus 100.0 2E-77 4.3E-82 645.5 37.3 581 191-784 193-829 (849)
9 PRK00409 recombination and DNA 100.0 2.5E-65 5.5E-70 609.3 46.0 465 258-740 18-513 (782)
10 TIGR01069 mutS2 MutS2 family p 100.0 4.3E-59 9.3E-64 554.3 46.8 466 257-741 17-509 (771)
11 PF00488 MutS_V: MutS domain V 100.0 2.4E-52 5.2E-57 433.3 16.7 233 509-743 1-234 (235)
12 cd03286 ABC_MSH6_euk MutS6 hom 100.0 1.5E-47 3.3E-52 391.7 17.8 211 524-734 2-218 (218)
13 cd03285 ABC_MSH2_euk MutS2 hom 100.0 5.8E-47 1.3E-51 390.6 20.8 219 524-742 2-222 (222)
14 cd03287 ABC_MSH3_euk MutS3 hom 100.0 4.5E-46 9.7E-51 382.0 17.6 213 522-734 1-222 (222)
15 cd03284 ABC_MutS1 MutS1 homolo 100.0 1.9E-43 4.2E-48 363.2 20.0 213 524-737 2-215 (216)
16 cd03282 ABC_MSH4_euk MutS4 hom 100.0 7.5E-41 1.6E-45 340.2 18.4 200 524-725 2-203 (204)
17 cd03281 ABC_MSH5_euk MutS5 hom 100.0 1.3E-40 2.8E-45 341.5 18.2 202 524-726 2-213 (213)
18 smart00534 MUTSac ATPase domai 100.0 2.9E-39 6.3E-44 325.2 16.5 184 554-737 1-184 (185)
19 COG1193 Mismatch repair ATPase 100.0 4.1E-38 8.9E-43 367.6 27.5 460 258-739 16-500 (753)
20 smart00533 MUTSd DNA-binding d 100.0 1.5E-36 3.3E-41 330.6 30.6 274 252-533 1-306 (308)
21 cd03283 ABC_MutS-like MutS-lik 100.0 1.9E-37 4.1E-42 314.7 18.1 196 524-726 2-199 (199)
22 cd03280 ABC_MutS2 MutS2 homolo 100.0 3.9E-37 8.5E-42 313.8 17.1 199 523-726 1-200 (200)
23 cd03243 ABC_MutS_homologs The 100.0 1.6E-36 3.5E-41 309.9 17.1 200 524-726 2-202 (202)
24 PF05192 MutS_III: MutS domain 99.9 1.5E-24 3.3E-29 221.7 18.1 204 232-500 1-204 (204)
25 cd03227 ABC_Class2 ABC-type Cl 99.9 1.7E-21 3.8E-26 191.8 13.3 138 524-685 2-151 (162)
26 COG1120 FepC ABC-type cobalami 99.8 5.1E-21 1.1E-25 197.8 13.4 162 538-700 14-225 (258)
27 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 7.9E-21 1.7E-25 195.3 13.4 156 540-698 18-222 (254)
28 COG1127 Ttg2A ABC-type transpo 99.8 6E-20 1.3E-24 183.6 14.8 172 520-697 7-229 (263)
29 COG1126 GlnQ ABC-type polar am 99.8 3.2E-20 7E-25 182.8 12.6 159 537-698 13-220 (240)
30 COG1136 SalX ABC-type antimicr 99.8 3.7E-20 8.1E-25 187.7 13.4 152 540-692 19-220 (226)
31 COG1116 TauB ABC-type nitrate/ 99.8 6.4E-20 1.4E-24 186.1 13.0 150 539-689 16-206 (248)
32 COG4555 NatA ABC-type Na+ tran 99.8 7.9E-20 1.7E-24 177.4 11.2 154 541-696 17-215 (245)
33 COG1131 CcmA ABC-type multidru 99.8 1.1E-19 2.4E-24 195.5 13.4 157 539-697 18-220 (293)
34 COG4152 ABC-type uncharacteriz 99.8 1.8E-19 3.9E-24 179.7 12.0 158 537-697 13-213 (300)
35 cd03214 ABC_Iron-Siderophores_ 99.8 7.7E-19 1.7E-23 176.1 13.8 153 539-693 12-177 (180)
36 PRK13536 nodulation factor exp 99.8 1.3E-18 2.9E-23 190.9 15.8 159 539-699 54-257 (340)
37 PRK13537 nodulation ABC transp 99.8 1.2E-18 2.7E-23 189.1 15.2 171 520-698 6-222 (306)
38 cd03293 ABC_NrtD_SsuB_transpor 99.8 2.2E-18 4.8E-23 178.5 14.5 157 539-696 17-216 (220)
39 TIGR01188 drrA daunorubicin re 99.8 2E-18 4.3E-23 187.4 14.7 156 539-697 6-207 (302)
40 COG3638 ABC-type phosphate/pho 99.8 1.2E-18 2.7E-23 173.8 11.4 160 538-698 16-232 (258)
41 cd03265 ABC_DrrA DrrA is the A 99.8 1.9E-18 4.1E-23 179.1 13.3 156 539-695 13-213 (220)
42 cd03226 ABC_cobalt_CbiO_domain 99.8 1.8E-18 3.9E-23 177.2 12.7 151 540-692 14-204 (205)
43 TIGR01288 nodI ATP-binding ABC 99.8 4.2E-18 9.2E-23 184.9 15.5 156 539-697 17-218 (303)
44 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 2.1E-18 4.5E-23 178.5 12.5 152 539-691 17-217 (218)
45 cd03238 ABC_UvrA The excision 99.8 2.1E-18 4.5E-23 171.3 11.7 149 539-689 8-163 (176)
46 PRK11247 ssuB aliphatic sulfon 99.8 4.4E-18 9.5E-23 180.1 15.0 155 539-694 25-214 (257)
47 cd03259 ABC_Carb_Solutes_like 99.8 4E-18 8.7E-23 175.7 14.1 154 539-693 13-210 (213)
48 TIGR00960 3a0501s02 Type II (G 99.8 2.8E-18 6E-23 177.3 12.8 150 540-691 17-215 (216)
49 cd03268 ABC_BcrA_bacitracin_re 99.8 4.2E-18 9.2E-23 174.9 13.2 153 539-693 13-205 (208)
50 cd03269 ABC_putative_ATPase Th 99.8 5.8E-18 1.3E-22 174.1 14.1 153 539-693 13-207 (210)
51 cd03301 ABC_MalK_N The N-termi 99.8 6.1E-18 1.3E-22 174.4 14.0 153 540-693 14-210 (213)
52 COG1137 YhbG ABC-type (unclass 99.8 1.1E-18 2.4E-23 169.3 7.7 163 537-701 15-226 (243)
53 cd03261 ABC_Org_Solvent_Resist 99.8 6.7E-18 1.5E-22 176.8 14.1 156 539-695 13-218 (235)
54 TIGR02315 ABC_phnC phosphonate 99.8 4.4E-18 9.4E-23 179.1 12.8 154 539-693 15-225 (243)
55 TIGR02211 LolD_lipo_ex lipopro 99.8 6.8E-18 1.5E-22 175.0 13.6 152 540-692 19-219 (221)
56 COG1125 OpuBA ABC-type proline 99.8 3.8E-18 8.3E-23 171.4 11.1 161 538-699 13-221 (309)
57 cd03219 ABC_Mj1267_LivG_branch 99.8 3.9E-18 8.5E-23 178.7 11.8 155 539-695 13-224 (236)
58 cd03218 ABC_YhbG The ABC trans 99.8 9.3E-18 2E-22 175.3 14.6 154 539-694 13-213 (232)
59 PRK10584 putative ABC transpor 99.8 8.4E-18 1.8E-22 175.2 14.2 153 540-693 24-225 (228)
60 TIGR02314 ABC_MetN D-methionin 99.8 6.8E-18 1.5E-22 185.1 14.0 156 540-697 19-224 (343)
61 cd03258 ABC_MetN_methionine_tr 99.7 9.3E-18 2E-22 175.5 14.3 155 540-695 19-222 (233)
62 COG1119 ModF ABC-type molybden 99.7 6.2E-18 1.4E-22 170.2 12.3 157 537-693 42-252 (257)
63 PRK11629 lolD lipoprotein tran 99.7 1.1E-17 2.3E-22 175.0 14.6 153 539-692 22-223 (233)
64 cd03296 ABC_CysA_sulfate_impor 99.7 6.1E-18 1.3E-22 177.6 12.6 156 539-695 15-218 (239)
65 cd03256 ABC_PhnC_transporter A 99.7 5.8E-18 1.3E-22 177.9 12.4 155 539-694 14-225 (241)
66 TIGR02673 FtsE cell division A 99.7 6.7E-18 1.4E-22 174.2 12.6 150 539-690 15-213 (214)
67 PRK11264 putative amino-acid A 99.7 1.3E-17 2.8E-22 176.3 15.0 154 539-694 16-224 (250)
68 COG2884 FtsE Predicted ATPase 99.7 1E-17 2.3E-22 161.5 12.8 154 539-694 15-217 (223)
69 cd03216 ABC_Carb_Monos_I This 99.7 3.6E-18 7.7E-23 168.4 9.9 144 540-693 14-161 (163)
70 TIGR03522 GldA_ABC_ATP gliding 99.7 9E-18 2E-22 182.1 13.9 156 539-697 15-215 (301)
71 cd03262 ABC_HisP_GlnQ_permease 99.7 9.3E-18 2E-22 173.0 13.3 151 539-691 13-212 (213)
72 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 1E-17 2.2E-22 175.5 13.7 154 539-693 14-211 (236)
73 PRK13637 cbiO cobalt transport 99.7 8.5E-18 1.8E-22 181.1 13.3 155 540-695 21-226 (287)
74 TIGR03265 PhnT2 putative 2-ami 99.7 7.6E-18 1.6E-22 185.9 13.2 158 539-697 17-218 (353)
75 cd03292 ABC_FtsE_transporter F 99.7 8.2E-18 1.8E-22 173.5 12.6 150 540-691 15-213 (214)
76 cd03267 ABC_NatA_like Similar 99.7 8.4E-18 1.8E-22 176.1 12.8 166 526-693 21-233 (236)
77 cd03263 ABC_subfamily_A The AB 99.7 8.3E-18 1.8E-22 174.2 12.6 154 539-695 15-213 (220)
78 cd03266 ABC_NatA_sodium_export 99.7 1.3E-17 2.8E-22 172.5 14.0 152 540-693 19-215 (218)
79 TIGR03258 PhnT 2-aminoethylpho 99.7 7.5E-18 1.6E-22 186.2 12.8 171 521-697 5-222 (362)
80 cd03225 ABC_cobalt_CbiO_domain 99.7 1.1E-17 2.4E-22 172.2 13.0 150 539-690 14-210 (211)
81 PRK11650 ugpC glycerol-3-phosp 99.7 7.3E-18 1.6E-22 186.2 12.3 157 539-697 17-218 (356)
82 TIGR03410 urea_trans_UrtE urea 99.7 1.1E-17 2.4E-22 174.5 12.9 156 539-695 13-213 (230)
83 COG1118 CysA ABC-type sulfate/ 99.7 7.1E-18 1.5E-22 174.1 11.1 158 540-699 16-223 (345)
84 PRK10895 lipopolysaccharide AB 99.7 1.9E-17 4.2E-22 174.0 14.7 154 539-694 16-217 (241)
85 PRK10253 iron-enterobactin tra 99.7 1.6E-17 3.5E-22 177.1 14.2 169 520-694 6-224 (265)
86 PRK11300 livG leucine/isoleuci 99.7 1.3E-17 2.9E-22 176.7 13.5 154 539-693 18-233 (255)
87 COG0411 LivG ABC-type branched 99.7 2.4E-18 5.1E-23 173.3 7.3 162 538-700 16-236 (250)
88 cd03235 ABC_Metallic_Cations A 99.7 1.5E-17 3.2E-22 171.5 13.5 149 539-689 12-207 (213)
89 PRK09536 btuD corrinoid ABC tr 99.7 1.3E-17 2.7E-22 186.2 13.8 156 539-697 16-222 (402)
90 PRK13647 cbiO cobalt transport 99.7 1.3E-17 2.8E-22 178.6 13.4 155 539-695 18-219 (274)
91 PRK10575 iron-hydroxamate tran 99.7 1.6E-17 3.4E-22 177.2 14.0 168 521-694 11-228 (265)
92 cd03294 ABC_Pro_Gly_Bertaine T 99.7 1.5E-17 3.3E-22 177.5 13.9 155 539-694 37-241 (269)
93 COG3839 MalK ABC-type sugar tr 99.7 4.7E-18 1E-22 182.5 9.9 180 541-731 18-241 (338)
94 TIGR03740 galliderm_ABC gallid 99.7 2E-17 4.4E-22 171.8 14.2 155 539-695 13-205 (223)
95 PRK13644 cbiO cobalt transport 99.7 1.4E-17 3.1E-22 178.2 13.2 155 540-696 16-217 (274)
96 COG1122 CbiO ABC-type cobalt t 99.7 6.3E-18 1.4E-22 174.8 10.1 155 539-694 17-219 (235)
97 PRK11248 tauB taurine transpor 99.7 2.3E-17 5E-22 174.7 14.7 154 539-694 14-211 (255)
98 PRK11432 fbpC ferric transport 99.7 1.2E-17 2.5E-22 184.1 12.8 170 521-697 6-220 (351)
99 PRK13651 cobalt transporter AT 99.7 1.1E-17 2.4E-22 181.3 12.2 154 540-695 21-246 (305)
100 cd03298 ABC_ThiQ_thiamine_tran 99.7 2E-17 4.3E-22 170.3 13.4 149 544-693 16-208 (211)
101 PRK11000 maltose/maltodextrin 99.7 2.3E-17 4.9E-22 183.5 14.6 157 539-697 16-217 (369)
102 TIGR01186 proV glycine betaine 99.7 1.1E-17 2.4E-22 184.4 11.9 158 539-697 6-213 (363)
103 PRK09452 potA putrescine/sperm 99.7 2.8E-17 6E-22 182.4 15.1 171 520-697 13-228 (375)
104 PRK11614 livF leucine/isoleuci 99.7 2.4E-17 5.2E-22 172.9 13.8 155 539-695 18-218 (237)
105 PRK13633 cobalt transporter AT 99.7 1.9E-17 4.1E-22 177.8 13.2 156 539-695 23-225 (280)
106 cd03224 ABC_TM1139_LivF_branch 99.7 2.2E-17 4.9E-22 171.2 13.3 153 540-694 14-212 (222)
107 PRK11153 metN DL-methionine tr 99.7 2.2E-17 4.8E-22 182.0 13.9 157 539-697 18-224 (343)
108 PRK13650 cbiO cobalt transport 99.7 2E-17 4.4E-22 177.5 13.2 155 540-695 21-221 (279)
109 PRK13548 hmuV hemin importer A 99.7 2.8E-17 6E-22 174.5 14.1 154 539-693 15-220 (258)
110 PRK10619 histidine/lysine/argi 99.7 2.6E-17 5.7E-22 174.7 14.0 168 520-694 4-232 (257)
111 PRK11831 putative ABC transpor 99.7 2.7E-17 5.9E-22 175.6 14.2 155 539-694 20-224 (269)
112 TIGR01184 ntrCD nitrate transp 99.7 2.3E-17 5E-22 172.1 13.3 151 543-694 2-195 (230)
113 cd03264 ABC_drug_resistance_li 99.7 3E-17 6.4E-22 169.0 13.9 151 539-693 13-208 (211)
114 PRK13640 cbiO cobalt transport 99.7 2.4E-17 5.1E-22 177.2 13.7 155 540-695 21-224 (282)
115 PRK13635 cbiO cobalt transport 99.7 2E-17 4.2E-22 177.5 13.0 156 539-695 20-221 (279)
116 cd03260 ABC_PstB_phosphate_tra 99.7 2.6E-17 5.7E-22 171.4 13.6 154 539-695 13-221 (227)
117 PRK10851 sulfate/thiosulfate t 99.7 1.4E-17 3E-22 183.8 12.1 157 539-697 15-220 (353)
118 PRK13638 cbiO cobalt transport 99.7 2.2E-17 4.8E-22 176.6 13.4 155 539-695 14-217 (271)
119 PRK09984 phosphonate/organopho 99.7 2.8E-17 6E-22 175.0 14.0 154 539-693 17-232 (262)
120 PRK10908 cell division protein 99.7 3E-17 6.4E-22 170.4 13.8 153 539-693 15-216 (222)
121 COG1124 DppF ABC-type dipeptid 99.7 2E-17 4.3E-22 166.5 11.7 159 540-699 21-227 (252)
122 PRK13648 cbiO cobalt transport 99.7 2.3E-17 4.9E-22 176.3 12.9 155 540-695 23-223 (269)
123 PRK09493 glnQ glutamine ABC tr 99.7 2.9E-17 6.4E-22 172.5 13.6 154 539-694 14-216 (240)
124 cd03230 ABC_DR_subfamily_A Thi 99.7 1.4E-17 3E-22 166.0 10.4 143 540-690 14-171 (173)
125 TIGR03005 ectoine_ehuA ectoine 99.7 3.5E-17 7.6E-22 173.2 14.1 155 539-694 13-227 (252)
126 TIGR03873 F420-0_ABC_ATP propo 99.7 2.1E-17 4.6E-22 175.3 12.4 153 539-693 14-216 (256)
127 COG3842 PotA ABC-type spermidi 99.7 1.3E-17 2.8E-22 180.1 10.6 174 520-699 4-222 (352)
128 TIGR01277 thiQ thiamine ABC tr 99.7 3.7E-17 8E-22 168.5 13.6 153 542-695 14-210 (213)
129 TIGR02770 nickel_nikD nickel i 99.7 3.2E-17 7E-22 171.0 13.3 153 541-694 1-206 (230)
130 PRK10247 putative ABC transpor 99.7 5.4E-17 1.2E-21 168.7 14.8 161 521-687 7-210 (225)
131 TIGR01978 sufC FeS assembly AT 99.7 4E-17 8.7E-22 171.8 13.9 156 539-696 13-227 (243)
132 TIGR01166 cbiO cobalt transpor 99.7 2.8E-17 6.1E-22 166.3 12.2 137 539-677 5-189 (190)
133 PRK13652 cbiO cobalt transport 99.7 3.4E-17 7.3E-22 175.7 13.5 155 540-696 18-220 (277)
134 PRK14250 phosphate ABC transpo 99.7 4.2E-17 9.1E-22 171.4 14.0 155 539-694 16-212 (241)
135 cd03232 ABC_PDR_domain2 The pl 99.7 1.1E-17 2.3E-22 169.7 9.0 146 539-693 20-189 (192)
136 PRK13641 cbiO cobalt transport 99.7 3.4E-17 7.3E-22 176.5 13.5 154 540-695 21-226 (287)
137 cd03246 ABCC_Protease_Secretio 99.7 1.9E-17 4.2E-22 164.9 10.7 141 540-690 16-171 (173)
138 PRK11607 potG putrescine trans 99.7 4.8E-17 1E-21 180.7 15.0 170 521-697 19-233 (377)
139 TIGR03411 urea_trans_UrtD urea 99.7 2.6E-17 5.7E-22 173.1 12.3 153 539-694 15-222 (242)
140 COG4619 ABC-type uncharacteriz 99.7 4E-17 8.7E-22 154.0 12.0 155 538-693 15-213 (223)
141 cd03295 ABC_OpuCA_Osmoprotecti 99.7 3.6E-17 7.8E-22 172.0 13.1 153 540-693 15-215 (242)
142 PRK09544 znuC high-affinity zi 99.7 3.7E-17 8E-22 172.6 13.2 148 539-687 17-194 (251)
143 cd03217 ABC_FeS_Assembly ABC-t 99.7 2.7E-17 5.8E-22 167.8 11.8 155 539-695 13-186 (200)
144 cd03215 ABC_Carb_Monos_II This 99.7 1.5E-17 3.3E-22 167.1 9.8 147 541-691 15-181 (182)
145 cd03257 ABC_NikE_OppD_transpor 99.7 4.9E-17 1.1E-21 169.4 14.0 152 540-693 19-225 (228)
146 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 4.6E-17 9.9E-22 169.1 13.7 153 539-693 35-221 (224)
147 PRK11124 artP arginine transpo 99.7 3.2E-17 7E-22 172.4 12.7 155 539-695 15-222 (242)
148 TIGR03608 L_ocin_972_ABC putat 99.7 3.8E-17 8.2E-22 167.5 12.9 143 539-683 11-202 (206)
149 COG1135 AbcC ABC-type metal io 99.7 4.5E-17 9.7E-22 168.6 13.2 157 540-697 20-225 (339)
150 PRK11231 fecE iron-dicitrate t 99.7 4E-17 8.7E-22 173.1 13.3 153 539-693 15-217 (255)
151 TIGR02769 nickel_nikE nickel i 99.7 3.2E-17 7E-22 174.8 12.6 155 539-694 24-231 (265)
152 TIGR02323 CP_lyasePhnK phospho 99.7 6.1E-17 1.3E-21 171.5 14.6 156 539-695 16-230 (253)
153 cd03245 ABCC_bacteriocin_expor 99.7 4.2E-17 9E-22 169.0 13.0 152 539-693 17-217 (220)
154 COG4586 ABC-type uncharacteriz 99.7 9.5E-17 2.1E-21 162.9 14.9 155 541-696 39-239 (325)
155 PRK13646 cbiO cobalt transport 99.7 3.7E-17 8.1E-22 176.1 12.8 154 540-695 21-227 (286)
156 COG1117 PstB ABC-type phosphat 99.7 4.4E-17 9.5E-22 160.0 12.0 157 538-697 19-231 (253)
157 TIGR03415 ABC_choXWV_ATP choli 99.7 3.2E-17 6.9E-22 181.6 12.4 159 539-698 37-249 (382)
158 PRK13632 cbiO cobalt transport 99.7 5E-17 1.1E-21 173.8 13.5 155 539-694 22-222 (271)
159 TIGR00972 3a0107s01c2 phosphat 99.7 8E-17 1.7E-21 170.0 14.7 152 540-694 15-223 (247)
160 PRK13643 cbiO cobalt transport 99.7 5.3E-17 1.2E-21 175.0 13.6 153 540-695 20-225 (288)
161 cd03247 ABCC_cytochrome_bd The 99.7 4.2E-17 9.1E-22 163.3 11.9 146 540-693 16-175 (178)
162 PRK11701 phnK phosphonate C-P 99.7 4.2E-17 9.2E-22 173.2 12.6 156 539-695 19-233 (258)
163 PRK14268 phosphate ABC transpo 99.7 8.1E-17 1.8E-21 171.0 14.7 154 539-695 25-234 (258)
164 TIGR02982 heterocyst_DevA ABC 99.7 6.9E-17 1.5E-21 167.4 13.8 152 539-691 18-218 (220)
165 cd03213 ABCG_EPDR ABCG transpo 99.7 2.6E-17 5.7E-22 167.1 10.4 145 539-693 22-191 (194)
166 cd03244 ABCC_MRP_domain2 Domai 99.7 6.1E-17 1.3E-21 167.9 13.4 152 539-693 17-216 (221)
167 TIGR00968 3a0106s01 sulfate AB 99.7 5.6E-17 1.2E-21 170.0 12.9 156 539-695 13-212 (237)
168 PRK13636 cbiO cobalt transport 99.7 7.2E-17 1.6E-21 173.6 14.0 156 539-695 19-223 (283)
169 PRK10418 nikD nickel transport 99.7 8.7E-17 1.9E-21 170.4 14.4 154 540-694 17-221 (254)
170 cd03297 ABC_ModC_molybdenum_tr 99.7 8.7E-17 1.9E-21 165.9 14.0 148 544-693 16-211 (214)
171 PRK14248 phosphate ABC transpo 99.7 1.1E-16 2.5E-21 170.8 15.4 176 510-694 11-243 (268)
172 PRK13634 cbiO cobalt transport 99.7 5E-17 1.1E-21 175.3 12.7 156 540-696 21-228 (290)
173 PRK03695 vitamin B12-transport 99.7 6.5E-17 1.4E-21 170.6 13.3 151 541-693 11-212 (248)
174 PRK14273 phosphate ABC transpo 99.7 1.3E-16 2.7E-21 169.1 14.9 168 520-695 6-230 (254)
175 PRK10771 thiQ thiamine transpo 99.7 8.7E-17 1.9E-21 168.0 13.5 150 543-693 16-209 (232)
176 PRK15112 antimicrobial peptide 99.7 7.4E-17 1.6E-21 172.1 13.1 154 539-693 26-229 (267)
177 PRK13639 cbiO cobalt transport 99.7 7.7E-17 1.7E-21 172.7 13.2 154 540-695 16-218 (275)
178 PRK14275 phosphate ABC transpo 99.7 1.6E-16 3.6E-21 171.0 15.9 153 539-694 52-261 (286)
179 PRK13631 cbiO cobalt transport 99.7 1.1E-16 2.3E-21 174.7 14.5 176 519-696 19-258 (320)
180 cd03229 ABC_Class3 This class 99.7 2E-17 4.4E-22 165.5 8.2 146 539-689 13-176 (178)
181 PRK13649 cbiO cobalt transport 99.7 7.9E-17 1.7E-21 173.2 13.3 154 540-695 21-226 (280)
182 PRK13538 cytochrome c biogenes 99.7 8.1E-17 1.7E-21 164.9 12.7 141 539-682 14-196 (204)
183 PRK10070 glycine betaine trans 99.7 8.7E-17 1.9E-21 179.4 13.7 156 539-696 41-247 (400)
184 cd03223 ABCD_peroxisomal_ALDP 99.7 2.6E-17 5.5E-22 162.8 8.4 134 540-687 15-160 (166)
185 PRK11022 dppD dipeptide transp 99.7 9E-17 1.9E-21 175.8 13.5 157 540-697 21-237 (326)
186 cd03250 ABCC_MRP_domain1 Domai 99.7 7.6E-17 1.7E-21 165.0 12.2 148 540-689 19-202 (204)
187 PRK13543 cytochrome c biogenes 99.7 1.6E-16 3.5E-21 163.9 14.6 158 520-684 10-207 (214)
188 PRK10419 nikE nickel transport 99.7 9.1E-17 2E-21 171.5 13.1 157 539-696 25-234 (268)
189 PRK15056 manganese/iron transp 99.7 7.3E-17 1.6E-21 172.6 12.4 152 539-693 20-220 (272)
190 PRK15093 antimicrobial peptide 99.7 1.2E-16 2.5E-21 175.5 14.2 156 539-696 20-241 (330)
191 PRK10744 pstB phosphate transp 99.7 1.6E-16 3.6E-21 168.9 14.9 168 520-695 12-236 (260)
192 COG3840 ThiQ ABC-type thiamine 99.7 9.4E-17 2E-21 153.6 11.6 155 543-698 16-214 (231)
193 COG4604 CeuD ABC-type enteroch 99.7 6.3E-17 1.4E-21 156.6 10.5 161 537-699 12-221 (252)
194 PRK13547 hmuV hemin importer A 99.7 1.1E-16 2.4E-21 170.8 13.6 155 539-694 14-235 (272)
195 PRK14242 phosphate transporter 99.7 1.7E-16 3.7E-21 168.1 14.9 153 539-694 19-228 (253)
196 CHL00131 ycf16 sulfate ABC tra 99.7 1.5E-16 3.3E-21 168.3 14.6 168 521-695 7-233 (252)
197 cd03228 ABCC_MRP_Like The MRP 99.7 5.9E-17 1.3E-21 161.1 10.5 139 540-689 16-169 (171)
198 PRK15079 oligopeptide ABC tran 99.7 9.3E-17 2E-21 175.9 12.8 156 539-696 34-244 (331)
199 PRK13546 teichoic acids export 99.7 1.4E-16 3.1E-21 169.2 13.9 153 539-693 37-222 (264)
200 cd03234 ABCG_White The White s 99.7 1.3E-16 2.9E-21 165.9 13.1 153 539-693 20-223 (226)
201 cd03252 ABCC_Hemolysin The ABC 99.7 1.1E-16 2.5E-21 167.7 12.6 153 539-694 15-216 (237)
202 PRK13642 cbiO cobalt transport 99.7 1.1E-16 2.5E-21 171.6 12.9 154 540-694 21-220 (277)
203 PRK13545 tagH teichoic acids e 99.7 8.9E-17 1.9E-21 181.3 12.4 155 539-695 37-224 (549)
204 COG0410 LivF ABC-type branched 99.7 1.1E-16 2.4E-21 160.1 11.6 159 538-697 15-220 (237)
205 PRK13539 cytochrome c biogenes 99.7 1.7E-16 3.6E-21 162.9 13.3 139 539-680 15-192 (207)
206 PRK13549 xylose transporter AT 99.7 1.1E-16 2.4E-21 186.2 13.6 157 539-697 18-226 (506)
207 PRK14235 phosphate transporter 99.7 2.4E-16 5.2E-21 168.2 15.0 167 520-694 18-242 (267)
208 PRK15177 Vi polysaccharide exp 99.7 1.6E-16 3.5E-21 163.6 12.9 150 541-694 2-183 (213)
209 PRK11144 modC molybdate transp 99.7 9.5E-17 2.1E-21 177.6 11.9 152 544-697 16-212 (352)
210 PRK15439 autoinducer 2 ABC tra 99.7 1.1E-16 2.5E-21 186.1 13.2 156 539-696 24-222 (510)
211 TIGR02142 modC_ABC molybdenum 99.7 1.6E-16 3.5E-21 176.0 13.7 152 544-696 15-214 (354)
212 cd03300 ABC_PotA_N PotA is an 99.7 1.9E-16 4.1E-21 165.5 13.5 154 539-693 13-210 (232)
213 PRK10762 D-ribose transporter 99.7 1.3E-16 2.9E-21 185.3 13.6 156 539-697 17-224 (501)
214 PRK10938 putative molybdenum t 99.7 2.1E-16 4.5E-21 183.4 15.1 155 539-695 16-216 (490)
215 PRK14237 phosphate transporter 99.7 2.9E-16 6.4E-21 167.5 15.1 168 520-695 19-243 (267)
216 PRK13645 cbiO cobalt transport 99.7 1.4E-16 3E-21 172.0 12.7 154 540-694 25-231 (289)
217 PRK14245 phosphate ABC transpo 99.7 2.5E-16 5.4E-21 166.5 14.3 155 539-696 16-227 (250)
218 COG1134 TagH ABC-type polysacc 99.7 5E-17 1.1E-21 164.0 8.3 161 539-701 40-234 (249)
219 PRK14247 phosphate ABC transpo 99.7 3.1E-16 6.8E-21 165.8 14.5 153 539-694 16-225 (250)
220 PRK13540 cytochrome c biogenes 99.7 2.4E-16 5.1E-21 160.9 13.1 142 539-683 14-195 (200)
221 PRK09580 sufC cysteine desulfu 99.7 2.7E-16 5.9E-21 166.0 13.9 153 539-693 14-225 (248)
222 cd03289 ABCC_CFTR2 The CFTR su 99.7 2.5E-16 5.3E-21 168.1 13.6 154 539-695 17-217 (275)
223 PRK09700 D-allose transporter 99.7 1.8E-16 4E-21 184.7 13.7 156 539-697 18-228 (510)
224 PRK14256 phosphate ABC transpo 99.7 3.5E-16 7.6E-21 165.6 14.6 154 539-695 17-228 (252)
225 cd03299 ABC_ModC_like Archeal 99.7 2.4E-16 5.2E-21 165.0 13.2 153 541-694 14-210 (235)
226 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 1.9E-16 4.1E-21 166.2 12.4 151 540-693 17-216 (238)
227 PRK14269 phosphate ABC transpo 99.7 2.4E-16 5.1E-21 166.2 13.1 153 539-694 15-221 (246)
228 cd03231 ABC_CcmA_heme_exporter 99.7 3.2E-16 7E-21 160.0 13.5 143 539-683 13-194 (201)
229 PRK14251 phosphate ABC transpo 99.7 4.7E-16 1E-20 164.5 15.2 153 539-694 17-226 (251)
230 PRK14274 phosphate ABC transpo 99.7 4.5E-16 9.7E-21 165.4 15.0 167 521-695 12-235 (259)
231 TIGR01189 ccmA heme ABC export 99.7 2.1E-16 4.5E-21 161.1 11.9 135 539-676 13-188 (198)
232 cd03251 ABCC_MsbA MsbA is an e 99.7 1.6E-16 3.6E-21 166.2 11.5 152 540-694 16-216 (234)
233 PRK14262 phosphate ABC transpo 99.7 4E-16 8.7E-21 164.9 14.5 154 539-695 16-226 (250)
234 cd03254 ABCC_Glucan_exporter_l 99.7 2.7E-16 5.8E-21 164.0 13.0 151 540-693 17-216 (229)
235 PRK14241 phosphate transporter 99.7 3.8E-16 8.2E-21 165.9 14.3 147 539-688 17-221 (258)
236 cd03237 ABC_RNaseL_inhibitor_d 99.7 2.4E-16 5.3E-21 165.7 12.6 138 546-684 19-186 (246)
237 PRK15439 autoinducer 2 ABC tra 99.7 2.4E-16 5.3E-21 183.4 13.9 154 541-696 278-485 (510)
238 PRK14264 phosphate ABC transpo 99.7 5E-16 1.1E-20 168.7 15.4 177 508-694 34-280 (305)
239 PRK10938 putative molybdenum t 99.7 2.2E-16 4.7E-21 183.2 13.2 169 520-695 259-484 (490)
240 cd03291 ABCC_CFTR1 The CFTR su 99.7 4.9E-16 1.1E-20 166.4 14.9 165 519-693 37-237 (282)
241 COG4133 CcmA ABC-type transpor 99.7 2.8E-16 6.1E-21 151.7 11.6 137 537-675 13-190 (209)
242 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 1E-16 2.2E-21 154.7 8.6 127 540-689 14-142 (144)
243 PRK11308 dppF dipeptide transp 99.7 2.9E-16 6.2E-21 171.8 13.2 157 539-697 28-238 (327)
244 PRK13549 xylose transporter AT 99.7 2.5E-16 5.5E-21 183.3 13.6 172 521-696 259-487 (506)
245 cd00267 ABC_ATPase ABC (ATP-bi 99.7 1.9E-16 4E-21 155.2 10.6 140 540-689 13-155 (157)
246 cd03248 ABCC_TAP TAP, the Tran 99.7 2.1E-16 4.6E-21 164.4 11.4 148 540-690 28-224 (226)
247 PRK14267 phosphate ABC transpo 99.7 4.7E-16 1E-20 164.7 14.2 153 539-694 17-228 (253)
248 PRK09473 oppD oligopeptide tra 99.7 6.7E-16 1.4E-20 169.1 15.6 176 520-697 11-245 (330)
249 TIGR03269 met_CoM_red_A2 methy 99.7 3.6E-16 7.8E-21 182.7 14.3 155 539-694 13-249 (520)
250 PRK14244 phosphate ABC transpo 99.7 5E-16 1.1E-20 164.3 14.0 153 539-694 18-228 (251)
251 PRK14239 phosphate transporter 99.7 5.7E-16 1.2E-20 164.0 14.4 153 539-694 18-227 (252)
252 cd03222 ABC_RNaseL_inhibitor T 99.7 2.9E-16 6.3E-21 156.1 11.2 126 541-684 15-142 (177)
253 TIGR03771 anch_rpt_ABC anchore 99.7 3.5E-16 7.6E-21 162.4 12.1 143 548-693 2-191 (223)
254 COG0396 sufC Cysteine desulfur 99.7 4.6E-16 1E-20 154.9 12.3 153 539-693 17-224 (251)
255 cd03253 ABCC_ATM1_transporter 99.7 3.8E-16 8.2E-21 163.6 12.4 152 539-693 14-214 (236)
256 TIGR02324 CP_lyasePhnL phospho 99.7 5.3E-16 1.1E-20 161.2 13.3 143 540-684 22-219 (224)
257 PRK10762 D-ribose transporter 99.7 5.2E-16 1.1E-20 180.4 14.7 151 541-694 267-475 (501)
258 PRK14240 phosphate transporter 99.7 7.4E-16 1.6E-20 162.9 14.6 154 539-695 16-226 (250)
259 cd03233 ABC_PDR_domain1 The pl 99.7 5.9E-16 1.3E-20 158.2 13.0 152 539-693 20-199 (202)
260 PRK10982 galactose/methyl gala 99.7 4.4E-16 9.5E-21 180.7 13.6 156 539-697 11-217 (491)
261 PRK10636 putative ABC transpor 99.7 4.2E-15 9.1E-20 176.9 22.2 149 539-693 325-506 (638)
262 PRK14265 phosphate ABC transpo 99.7 1E-15 2.2E-20 164.0 15.1 161 520-688 19-234 (274)
263 PRK14246 phosphate ABC transpo 99.7 7.1E-16 1.5E-20 163.5 13.8 153 539-694 23-232 (257)
264 PRK13541 cytochrome c biogenes 99.7 5.7E-16 1.2E-20 157.5 12.4 140 540-682 15-190 (195)
265 TIGR02633 xylG D-xylose ABC tr 99.7 4.5E-16 9.8E-21 181.0 13.2 155 539-695 14-222 (500)
266 PRK14254 phosphate ABC transpo 99.7 1E-15 2.2E-20 164.8 14.9 152 539-693 52-259 (285)
267 PRK14261 phosphate ABC transpo 99.7 7.8E-16 1.7E-20 163.0 13.7 153 539-694 19-228 (253)
268 PRK14270 phosphate ABC transpo 99.7 8.9E-16 1.9E-20 162.4 14.0 154 539-695 17-227 (251)
269 cd03290 ABCC_SUR1_N The SUR do 99.7 5.8E-16 1.2E-20 160.3 12.3 147 540-687 15-214 (218)
270 PRK14259 phosphate ABC transpo 99.7 1.4E-15 3E-20 162.5 15.4 162 520-689 12-228 (269)
271 TIGR02633 xylG D-xylose ABC tr 99.7 4.8E-16 1E-20 180.8 12.9 171 521-696 257-485 (500)
272 cd03369 ABCC_NFT1 Domain 2 of 99.7 8.6E-16 1.9E-20 157.6 13.3 164 520-693 5-202 (207)
273 PRK09700 D-allose transporter 99.7 5.4E-16 1.2E-20 180.8 13.2 165 520-694 264-489 (510)
274 PRK14253 phosphate ABC transpo 99.7 1.3E-15 2.8E-20 160.9 14.9 153 539-694 16-224 (249)
275 PRK14255 phosphate ABC transpo 99.6 9.5E-16 2.1E-20 162.3 13.8 154 539-695 18-228 (252)
276 PRK15134 microcin C ABC transp 99.6 5.8E-16 1.2E-20 181.2 13.3 155 539-695 22-238 (529)
277 PRK11288 araG L-arabinose tran 99.6 6.1E-16 1.3E-20 179.8 13.3 154 540-695 267-477 (501)
278 COG4598 HisP ABC-type histidin 99.6 4.4E-16 9.6E-21 148.4 9.8 153 539-693 19-231 (256)
279 PRK14236 phosphate transporter 99.6 1.6E-15 3.4E-20 162.4 15.1 168 520-695 24-248 (272)
280 PRK14252 phosphate ABC transpo 99.6 2.3E-15 4.9E-20 160.6 16.0 167 520-694 15-240 (265)
281 PRK15134 microcin C ABC transp 99.6 6.2E-16 1.3E-20 181.0 12.7 155 539-695 299-507 (529)
282 PRK14249 phosphate ABC transpo 99.6 1.8E-15 3.9E-20 160.0 14.9 153 539-694 17-226 (251)
283 PRK14257 phosphate ABC transpo 99.6 9.3E-16 2E-20 167.8 13.0 173 519-697 78-307 (329)
284 PRK14271 phosphate ABC transpo 99.6 1.9E-15 4.1E-20 161.9 15.1 166 521-694 21-242 (276)
285 PRK14238 phosphate transporter 99.6 1.7E-15 3.6E-20 162.0 14.6 154 539-695 37-247 (271)
286 PRK11288 araG L-arabinose tran 99.6 8.3E-16 1.8E-20 178.7 13.2 153 539-694 17-220 (501)
287 PRK14258 phosphate ABC transpo 99.6 2E-15 4.4E-20 160.6 15.0 169 521-695 7-237 (261)
288 PRK10982 galactose/methyl gala 99.6 7.1E-16 1.5E-20 178.9 12.6 167 520-695 249-472 (491)
289 COG1129 MglA ABC-type sugar tr 99.6 1.2E-15 2.6E-20 170.5 13.7 157 539-697 21-228 (500)
290 PRK14272 phosphate ABC transpo 99.6 1.5E-15 3.3E-20 160.7 13.9 154 539-695 17-228 (252)
291 cd03270 ABC_UvrA_I The excisio 99.6 1.3E-15 2.9E-20 158.2 12.7 147 539-687 8-211 (226)
292 COG4181 Predicted ABC-type tra 99.6 1.5E-15 3.2E-20 143.9 11.7 154 539-693 23-225 (228)
293 PRK10261 glutathione transport 99.6 6.8E-16 1.5E-20 183.5 11.5 156 540-697 338-547 (623)
294 COG0488 Uup ATPase components 99.6 5.1E-15 1.1E-19 169.7 18.0 146 538-690 15-226 (530)
295 PRK10636 putative ABC transpor 99.6 1.7E-15 3.7E-20 180.3 14.6 149 539-692 14-224 (638)
296 PRK14263 phosphate ABC transpo 99.6 2.1E-15 4.5E-20 160.4 13.5 147 539-688 21-222 (261)
297 PRK14243 phosphate transporter 99.6 3.7E-15 8.1E-20 158.8 15.3 147 539-688 23-224 (264)
298 COG4559 ABC-type hemin transpo 99.6 2.1E-15 4.6E-20 147.9 12.2 159 539-699 14-226 (259)
299 PRK14260 phosphate ABC transpo 99.6 3.6E-15 7.8E-20 158.5 15.0 147 539-688 20-223 (259)
300 TIGR01257 rim_protein retinal- 99.6 1.5E-15 3.2E-20 194.6 14.1 157 539-698 1952-2154(2272)
301 COG0444 DppD ABC-type dipeptid 99.6 1.3E-15 2.8E-20 160.1 11.2 157 540-697 19-237 (316)
302 PRK10261 glutathione transport 99.6 1E-15 2.2E-20 181.9 11.6 155 539-695 29-250 (623)
303 TIGR03269 met_CoM_red_A2 methy 99.6 2.4E-15 5.1E-20 175.8 14.3 154 539-694 297-508 (520)
304 PRK15064 ABC transporter ATP-b 99.6 1.8E-15 4E-20 177.1 13.2 148 539-692 14-230 (530)
305 PRK15064 ABC transporter ATP-b 99.6 2.6E-15 5.6E-20 175.8 14.2 149 539-693 332-514 (530)
306 COG4674 Uncharacterized ABC-ty 99.6 2E-15 4.4E-20 146.1 10.5 157 538-697 17-229 (249)
307 PRK14266 phosphate ABC transpo 99.6 4.3E-15 9.4E-20 157.1 14.0 154 539-695 16-226 (250)
308 cd03288 ABCC_SUR2 The SUR doma 99.6 2.4E-15 5.2E-20 159.6 12.0 153 539-694 34-234 (257)
309 PRK13409 putative ATPase RIL; 99.6 3.5E-15 7.5E-20 175.2 14.4 147 540-687 353-527 (590)
310 TIGR01257 rim_protein retinal- 99.6 2.5E-15 5.4E-20 192.5 13.9 155 539-697 943-1143(2272)
311 cd03236 ABC_RNaseL_inhibitor_d 99.6 4.1E-15 8.9E-20 157.1 13.0 143 540-685 15-210 (255)
312 COG4175 ProV ABC-type proline/ 99.6 2.5E-15 5.5E-20 155.4 10.9 161 541-702 43-253 (386)
313 COG4525 TauB ABC-type taurine 99.6 1.3E-14 2.8E-19 140.5 14.1 144 540-684 19-203 (259)
314 PRK11819 putative ABC transpor 99.6 4.2E-15 9.2E-20 174.8 12.6 147 539-692 20-238 (556)
315 COG2274 SunT ABC-type bacterio 99.6 6.6E-15 1.4E-19 174.1 14.2 172 520-697 470-690 (709)
316 PLN03073 ABC transporter F fam 99.6 4.9E-14 1.1E-18 168.6 21.7 149 539-693 522-703 (718)
317 PRK11147 ABC transporter ATPas 99.6 8.1E-15 1.8E-19 174.8 14.8 148 539-692 332-516 (635)
318 cd03278 ABC_SMC_barmotin Barmo 99.6 5.6E-15 1.2E-19 150.1 11.3 134 543-684 14-185 (197)
319 COG1123 ATPase components of v 99.6 6.4E-15 1.4E-19 165.8 12.5 157 540-697 23-238 (539)
320 PLN03211 ABC transporter G-25; 99.6 5.4E-15 1.2E-19 175.8 12.4 159 539-699 81-292 (659)
321 COG4148 ModC ABC-type molybdat 99.6 4.1E-15 8.9E-20 151.4 9.6 153 544-697 16-212 (352)
322 TIGR01842 type_I_sec_PrtD type 99.6 1.9E-14 4.2E-19 169.0 16.9 171 520-695 315-534 (544)
323 KOG0057|consensus 99.6 3.6E-14 7.7E-19 156.8 17.5 172 520-698 350-569 (591)
324 PRK11819 putative ABC transpor 99.6 8E-14 1.7E-18 164.0 21.6 144 539-688 337-516 (556)
325 PRK11147 ABC transporter ATPas 99.6 8.2E-15 1.8E-19 174.8 13.3 147 539-692 16-231 (635)
326 PRK10535 macrolide transporter 99.6 1.3E-14 2.8E-19 173.2 14.4 161 539-701 21-230 (648)
327 COG4988 CydD ABC-type transpor 99.6 3.7E-14 8E-19 159.0 17.0 158 539-699 334-539 (559)
328 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 1.2E-14 2.6E-19 170.9 13.5 145 539-689 335-515 (552)
329 COG4608 AppF ABC-type oligopep 99.6 8.3E-15 1.8E-19 150.9 10.4 160 540-701 27-197 (268)
330 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 1.2E-14 2.5E-19 171.0 12.9 147 539-692 18-236 (552)
331 COG3845 ABC-type uncharacteriz 99.6 1.4E-14 3E-19 158.8 12.5 155 541-697 19-223 (501)
332 PRK10522 multidrug transporter 99.6 1.7E-14 3.7E-19 169.6 13.9 169 521-694 322-529 (547)
333 TIGR02203 MsbA_lipidA lipid A 99.6 4.5E-14 9.8E-19 167.2 17.1 169 521-695 330-548 (571)
334 TIGR03375 type_I_sec_LssB type 99.6 8.4E-14 1.8E-18 168.4 19.7 170 520-695 462-680 (694)
335 COG0488 Uup ATPase components 99.6 1.3E-13 2.9E-18 158.1 20.1 143 539-687 335-509 (530)
336 TIGR03797 NHPM_micro_ABC2 NHPM 99.6 8E-14 1.7E-18 168.3 19.2 169 520-696 450-666 (686)
337 PRK13657 cyclic beta-1,2-gluca 99.6 8.9E-14 1.9E-18 165.1 18.9 166 521-693 334-548 (588)
338 PRK11160 cysteine/glutathione 99.5 1E-13 2.2E-18 163.8 18.8 171 520-696 337-555 (574)
339 PRK10790 putative multidrug tr 99.5 1.3E-13 2.8E-18 163.8 19.8 169 520-695 339-555 (592)
340 TIGR02204 MsbA_rel ABC transpo 99.5 9.4E-14 2E-18 164.6 18.5 171 520-695 336-555 (576)
341 PRK13409 putative ATPase RIL; 99.5 2.6E-14 5.6E-19 167.9 13.5 145 539-687 87-284 (590)
342 TIGR01194 cyc_pep_trnsptr cycl 99.5 4.5E-14 9.9E-19 166.1 15.1 154 539-694 355-550 (555)
343 TIGR01187 potA spermidine/putr 99.5 2.2E-14 4.8E-19 157.2 11.6 100 597-697 83-184 (325)
344 PRK10789 putative multidrug tr 99.5 1.6E-13 3.4E-18 162.1 19.5 153 539-694 328-529 (569)
345 TIGR01192 chvA glucan exporter 99.5 1.1E-13 2.4E-18 163.8 18.1 166 521-693 334-548 (585)
346 PRK11176 lipid transporter ATP 99.5 1.5E-13 3.3E-18 163.0 19.5 169 521-695 341-559 (582)
347 COG4161 ArtP ABC-type arginine 99.5 4.3E-14 9.4E-19 132.5 11.3 158 539-698 15-225 (242)
348 TIGR03796 NHPM_micro_ABC1 NHPM 99.5 5.1E-14 1.1E-18 170.8 15.3 170 520-697 476-694 (710)
349 TIGR01846 type_I_sec_HlyB type 99.5 1.6E-13 3.5E-18 165.8 19.6 170 520-695 454-672 (694)
350 TIGR00955 3a01204 The Eye Pigm 99.5 2.5E-14 5.4E-19 170.0 12.0 159 538-698 37-251 (617)
351 TIGR00954 3a01203 Peroxysomal 99.5 1.4E-13 2.9E-18 164.7 18.2 142 539-685 465-649 (659)
352 cd03271 ABC_UvrA_II The excisi 99.5 5.5E-14 1.2E-18 148.1 13.1 95 598-694 152-257 (261)
353 PLN03073 ABC transporter F fam 99.5 3.4E-14 7.3E-19 170.0 12.8 149 539-692 190-419 (718)
354 PRK11174 cysteine/glutathione 99.5 1.3E-13 2.8E-18 163.8 17.7 167 521-694 349-563 (588)
355 COG1123 ATPase components of v 99.5 5.2E-14 1.1E-18 158.5 12.3 156 540-696 305-512 (539)
356 TIGR01193 bacteriocin_ABC ABC- 99.5 2.6E-13 5.7E-18 164.4 19.0 169 520-696 472-690 (708)
357 COG4987 CydC ABC-type transpor 99.5 1.3E-13 2.8E-18 152.3 14.7 161 538-701 350-559 (573)
358 TIGR00958 3a01208 Conjugate Tr 99.5 2.1E-13 4.5E-18 164.9 17.9 171 520-697 477-696 (711)
359 COG4107 PhnK ABC-type phosphon 99.5 1.2E-13 2.6E-18 131.2 11.8 155 539-694 19-232 (258)
360 KOG0059|consensus 99.5 3.2E-14 6.9E-19 174.6 10.1 155 541-698 580-782 (885)
361 cd03279 ABC_sbcCD SbcCD and ot 99.5 1.4E-13 3E-18 142.0 12.7 145 543-689 18-208 (213)
362 PLN03140 ABC transporter G fam 99.5 1.1E-13 2.4E-18 176.3 13.6 157 539-697 893-1104(1470)
363 COG1101 PhnK ABC-type uncharac 99.5 1.7E-13 3.6E-18 135.0 11.5 153 539-692 19-227 (263)
364 KOG0927|consensus 99.5 6.2E-14 1.3E-18 154.3 9.2 149 540-693 404-585 (614)
365 TIGR02857 CydD thiol reductant 99.5 7.7E-13 1.7E-17 155.2 18.1 158 521-684 320-526 (529)
366 KOG0062|consensus 99.5 1.2E-13 2.5E-18 151.4 10.1 138 537-679 91-259 (582)
367 TIGR00956 3a01205 Pleiotropic 99.5 1.7E-13 3.7E-18 175.2 13.1 157 539-697 776-987 (1394)
368 cd03274 ABC_SMC4_euk Eukaryoti 99.5 1.6E-13 3.4E-18 141.1 9.4 79 604-685 117-200 (212)
369 PTZ00243 ABC transporter; Prov 99.5 2.2E-13 4.8E-18 175.7 12.7 156 539-696 673-863 (1560)
370 COG4618 ArpD ABC-type protease 99.4 9.6E-13 2.1E-17 144.2 14.9 176 519-700 332-557 (580)
371 TIGR01271 CFTR_protein cystic 99.4 3E-13 6.5E-18 174.4 12.6 157 539-697 439-630 (1490)
372 COG4778 PhnL ABC-type phosphon 99.4 6.2E-13 1.4E-17 126.0 10.7 143 539-684 24-222 (235)
373 COG4136 ABC-type uncharacteriz 99.4 3.2E-13 7E-18 125.4 8.5 139 540-679 16-199 (213)
374 TIGR00957 MRP_assoc_pro multi 99.4 1.4E-12 3.1E-17 168.6 17.9 173 521-696 636-843 (1522)
375 TIGR00956 3a01205 Pleiotropic 99.4 4.5E-13 9.7E-18 171.4 11.3 157 540-697 75-294 (1394)
376 COG4138 BtuD ABC-type cobalami 99.4 1.7E-13 3.7E-18 130.4 5.3 152 544-698 17-216 (248)
377 PF05188 MutS_II: MutS domain 99.4 1.5E-12 3.2E-17 124.2 11.9 123 86-217 12-136 (137)
378 PLN03140 ABC transporter G fam 99.4 3.7E-13 8E-18 171.7 9.8 157 540-697 179-421 (1470)
379 PLN03232 ABC transporter C fam 99.4 4.6E-12 9.9E-17 163.8 18.8 173 521-697 614-822 (1495)
380 cd03276 ABC_SMC6_euk Eukaryoti 99.4 1.4E-12 3E-17 132.7 10.8 139 544-683 14-184 (198)
381 COG1132 MdlB ABC-type multidru 99.4 8.4E-13 1.8E-17 156.1 10.5 159 538-700 341-549 (567)
382 cd03272 ABC_SMC3_euk Eukaryoti 99.4 1.8E-12 3.8E-17 136.5 11.7 74 610-686 154-232 (243)
383 KOG0055|consensus 99.4 1.4E-12 3.1E-17 157.2 11.8 176 520-701 349-574 (1228)
384 cd03240 ABC_Rad50 The catalyti 99.4 8.5E-13 1.8E-17 135.0 8.5 75 609-684 110-192 (204)
385 PTZ00265 multidrug resistance 99.4 1.7E-12 3.6E-17 166.5 13.1 79 612-691 577-656 (1466)
386 KOG0061|consensus 99.4 1.9E-12 4.1E-17 152.6 12.0 158 539-698 43-255 (613)
387 PLN03130 ABC transporter C fam 99.4 9.5E-12 2.1E-16 161.1 19.3 172 521-696 614-821 (1622)
388 PLN03232 ABC transporter C fam 99.4 7.8E-12 1.7E-16 161.6 17.5 175 520-700 1233-1455(1495)
389 TIGR02868 CydC thiol reductant 99.4 1.6E-11 3.4E-16 144.1 18.4 148 521-675 334-529 (529)
390 cd03273 ABC_SMC2_euk Eukaryoti 99.4 4.1E-12 8.9E-17 134.4 12.1 76 609-687 161-241 (251)
391 KOG0927|consensus 99.4 1.1E-11 2.4E-16 136.7 15.7 149 539-691 88-296 (614)
392 PLN03130 ABC transporter C fam 99.4 5.8E-12 1.3E-16 163.0 15.8 176 520-701 1236-1459(1622)
393 cd03275 ABC_SMC1_euk Eukaryoti 99.3 5.1E-12 1.1E-16 133.3 12.0 70 613-684 154-228 (247)
394 PF01624 MutS_I: MutS domain I 99.3 6.2E-13 1.3E-17 122.6 4.1 76 2-79 2-80 (113)
395 COG4615 PvdE ABC-type sideroph 99.3 2.4E-11 5.2E-16 129.2 14.4 171 520-695 321-529 (546)
396 PTZ00243 ABC transporter; Prov 99.3 6.5E-12 1.4E-16 162.3 12.3 157 539-698 1323-1528(1560)
397 TIGR01271 CFTR_protein cystic 99.3 6.5E-12 1.4E-16 162.2 12.1 155 539-696 1232-1433(1490)
398 COG4172 ABC-type uncharacteriz 99.3 6.8E-12 1.5E-16 133.8 9.5 157 540-697 301-510 (534)
399 TIGR00630 uvra excinuclease AB 99.3 1.1E-11 2.4E-16 150.6 12.5 95 599-695 812-917 (924)
400 TIGR00957 MRP_assoc_pro multi 99.3 3.3E-11 7.2E-16 156.1 17.6 173 520-698 1283-1503(1522)
401 PTZ00265 multidrug resistance 99.3 1.4E-11 3.1E-16 158.0 14.1 76 613-689 1357-1433(1466)
402 cd03239 ABC_SMC_head The struc 99.3 9.9E-12 2.1E-16 124.2 10.0 128 554-687 24-170 (178)
403 KOG0058|consensus 99.3 1.6E-11 3.4E-16 140.7 12.3 171 520-696 464-684 (716)
404 PF00005 ABC_tran: ABC transpo 99.3 6.9E-12 1.5E-16 119.7 7.2 100 543-642 2-137 (137)
405 cd03277 ABC_SMC5_euk Eukaryoti 99.2 1.4E-11 3.1E-16 126.7 8.5 71 611-682 123-200 (213)
406 PRK00635 excinuclease ABC subu 99.2 2.2E-11 4.7E-16 154.4 11.7 88 599-688 793-885 (1809)
407 PRK00349 uvrA excinuclease ABC 99.2 6.1E-11 1.3E-15 144.4 14.4 86 600-687 815-905 (943)
408 COG4172 ABC-type uncharacteriz 99.2 6.4E-11 1.4E-15 126.5 12.1 157 538-695 22-239 (534)
409 KOG0066|consensus 99.2 5.2E-11 1.1E-15 127.4 9.5 137 538-679 599-765 (807)
410 KOG2355|consensus 99.2 1.1E-10 2.3E-15 114.3 9.3 168 520-693 12-227 (291)
411 COG2401 ABC-type ATPase fused 99.2 1.8E-10 4E-15 123.2 11.5 150 539-689 396-584 (593)
412 COG4178 ABC-type uncharacteriz 99.1 1E-09 2.3E-14 125.6 18.2 142 539-683 406-582 (604)
413 KOG0055|consensus 99.1 1.5E-10 3.2E-15 140.1 11.3 175 520-700 986-1210(1228)
414 KOG0056|consensus 99.1 1.1E-10 2.3E-15 126.9 8.6 169 520-697 536-755 (790)
415 COG1245 Predicted ATPase, RNas 99.1 2.6E-10 5.6E-15 123.6 10.2 178 550-755 365-570 (591)
416 KOG0054|consensus 99.1 8.4E-10 1.8E-14 136.7 15.2 175 519-697 516-725 (1381)
417 COG4167 SapF ABC-type antimicr 99.0 8.2E-10 1.8E-14 106.2 9.0 154 542-696 29-232 (267)
418 COG1245 Predicted ATPase, RNas 99.0 1.6E-09 3.5E-14 117.5 12.0 148 540-690 84-288 (591)
419 PF05190 MutS_IV: MutS family 99.0 5.2E-09 1.1E-13 92.7 11.9 81 376-459 11-92 (92)
420 KOG0062|consensus 99.0 4.2E-09 9.1E-14 116.1 13.1 148 540-694 378-559 (582)
421 cd03241 ABC_RecN RecN ATPase i 99.0 1.2E-09 2.5E-14 117.3 8.0 73 615-690 171-248 (276)
422 COG1129 MglA ABC-type sugar tr 98.9 5.8E-09 1.2E-13 117.4 12.6 170 520-700 262-487 (500)
423 COG3910 Predicted ATPase [Gene 98.9 4.1E-09 9E-14 102.1 8.9 56 622-679 137-192 (233)
424 KOG0064|consensus 98.9 1.6E-08 3.4E-13 111.5 13.9 139 539-682 495-676 (728)
425 KOG0060|consensus 98.9 2.4E-08 5.2E-13 111.7 14.9 155 520-682 432-634 (659)
426 KOG0065|consensus 98.9 4.1E-09 9E-14 127.8 8.5 174 520-697 786-1015(1391)
427 COG5265 ATM1 ABC-type transpor 98.8 2.4E-08 5.2E-13 107.9 12.0 155 538-697 275-480 (497)
428 COG0178 UvrA Excinuclease ATPa 98.8 2.9E-08 6.3E-13 114.9 12.8 73 611-685 819-895 (935)
429 COG4170 SapD ABC-type antimicr 98.8 1.5E-08 3.2E-13 99.6 8.1 147 540-687 21-232 (330)
430 KOG0054|consensus 98.7 2.8E-08 6.2E-13 123.4 11.1 174 519-698 1136-1357(1381)
431 PRK00635 excinuclease ABC subu 98.7 6E-08 1.3E-12 123.8 12.3 75 610-686 1695-1773(1809)
432 KOG0066|consensus 98.7 5.7E-09 1.2E-13 112.1 2.7 146 540-690 278-485 (807)
433 PF02463 SMC_N: RecF/RecN/SMC 98.6 1.9E-07 4.2E-12 96.6 11.7 68 614-684 136-208 (220)
434 TIGR02858 spore_III_AA stage I 98.6 1.7E-07 3.6E-12 99.6 10.0 113 553-682 112-236 (270)
435 cd03242 ABC_RecF RecF is a rec 98.5 2.8E-07 6E-12 98.6 8.5 61 615-681 184-255 (270)
436 PRK08533 flagellar accessory p 98.4 2E-06 4.3E-11 89.7 11.4 124 549-676 21-163 (230)
437 PRK13695 putative NTPase; Prov 98.4 6.8E-07 1.5E-11 89.1 7.1 61 628-692 93-153 (174)
438 KOG0219|consensus 98.3 7.9E-08 1.7E-12 110.4 -0.5 293 444-748 544-844 (902)
439 cd01124 KaiC KaiC is a circadi 98.3 1.5E-06 3.2E-11 87.4 8.1 121 554-677 1-142 (187)
440 PF13304 AAA_21: AAA domain; P 98.3 1.5E-06 3.3E-11 90.7 7.7 61 616-678 238-302 (303)
441 PRK07721 fliI flagellum-specif 98.2 1E-05 2.2E-10 91.6 12.4 151 539-697 146-337 (438)
442 TIGR00630 uvra excinuclease AB 98.2 2.8E-06 6E-11 104.1 8.5 96 599-696 471-576 (924)
443 cd01120 RecA-like_NTPases RecA 98.2 4.8E-06 1E-10 81.0 8.7 122 554-676 1-138 (165)
444 PRK06067 flagellar accessory p 98.2 1.1E-05 2.4E-10 84.5 11.0 126 549-676 22-166 (234)
445 PRK00349 uvrA excinuclease ABC 98.1 3.9E-06 8.4E-11 103.0 8.2 97 598-696 472-578 (943)
446 smart00382 AAA ATPases associa 98.1 2.4E-05 5.2E-10 73.4 11.1 116 552-674 2-125 (148)
447 KOG0063|consensus 98.0 1.6E-05 3.6E-10 86.2 9.5 131 551-683 366-526 (592)
448 KOG0065|consensus 98.0 8E-06 1.7E-10 100.0 7.7 154 540-696 129-344 (1391)
449 cd01131 PilT Pilus retraction 98.0 1.3E-05 2.9E-10 81.6 6.9 114 554-683 3-117 (198)
450 TIGR02788 VirB11 P-type DNA tr 97.9 8.1E-06 1.8E-10 89.0 4.0 125 547-687 139-265 (308)
451 cd00820 PEPCK_HprK Phosphoenol 97.8 1.3E-05 2.8E-10 72.5 3.2 34 540-573 3-36 (107)
452 PRK04296 thymidine kinase; Pro 97.8 8.5E-05 1.8E-09 75.2 9.3 144 552-709 2-158 (190)
453 PRK06793 fliI flagellum-specif 97.8 0.00033 7.3E-09 78.8 14.3 141 546-694 150-302 (432)
454 COG3845 ABC-type uncharacteriz 97.8 7E-05 1.5E-09 83.4 8.6 174 519-698 255-487 (501)
455 PRK09183 transposase/IS protei 97.7 0.00014 3.1E-09 77.2 9.3 107 544-674 95-205 (259)
456 PF13555 AAA_29: P-loop contai 97.7 3E-05 6.5E-10 62.7 3.1 31 544-575 16-46 (62)
457 cd00009 AAA The AAA+ (ATPases 97.7 0.00019 4.1E-09 67.9 8.9 26 551-576 18-43 (151)
458 cd01130 VirB11-like_ATPase Typ 97.6 4.1E-05 8.9E-10 77.2 3.8 30 546-575 19-48 (186)
459 PRK14722 flhF flagellar biosyn 97.6 0.00011 2.4E-09 81.3 7.4 93 544-643 129-227 (374)
460 TIGR00634 recN DNA repair prot 97.6 0.00049 1.1E-08 81.4 13.0 114 614-738 440-561 (563)
461 PRK10869 recombination and rep 97.6 0.00052 1.1E-08 80.6 12.5 109 618-738 435-551 (553)
462 KOG0063|consensus 97.5 0.00024 5.1E-09 77.5 7.6 73 612-686 211-284 (592)
463 PRK06995 flhF flagellar biosyn 97.5 0.00015 3.3E-09 82.7 6.5 87 550-643 254-346 (484)
464 PRK14721 flhF flagellar biosyn 97.5 0.00031 6.6E-09 79.0 8.6 91 550-649 189-285 (420)
465 cd01125 repA Hexameric Replica 97.5 0.00066 1.4E-08 71.3 10.5 25 552-576 1-25 (239)
466 PF00004 AAA: ATPase family as 97.5 0.00047 1E-08 64.6 8.4 104 555-677 1-114 (132)
467 PRK14723 flhF flagellar biosyn 97.4 0.00038 8.3E-09 83.1 9.3 97 541-644 174-276 (767)
468 TIGR01420 pilT_fam pilus retra 97.4 0.00021 4.6E-09 79.1 6.6 113 551-679 121-234 (343)
469 PF13401 AAA_22: AAA domain; P 97.4 0.00043 9.2E-09 65.0 7.6 114 551-674 3-125 (131)
470 TIGR01026 fliI_yscN ATPase Fli 97.4 0.0027 5.9E-08 72.2 15.2 35 540-575 152-186 (440)
471 PRK06526 transposase; Provisio 97.4 0.00051 1.1E-08 72.6 8.2 104 551-674 97-200 (254)
472 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.002 4.3E-08 67.3 12.0 29 549-577 16-44 (235)
473 PRK06893 DNA replication initi 97.3 0.00064 1.4E-08 70.9 8.2 94 553-675 40-134 (229)
474 TIGR03238 dnd_assoc_3 dnd syst 97.3 0.00012 2.5E-09 82.4 2.5 34 540-574 20-53 (504)
475 PRK06731 flhF flagellar biosyn 97.3 0.0014 3.1E-08 69.7 10.6 90 551-644 74-167 (270)
476 PHA02562 46 endonuclease subun 97.3 0.00046 1E-08 81.9 7.6 75 611-689 465-551 (562)
477 PRK11889 flhF flagellar biosyn 97.3 0.0029 6.3E-08 70.0 13.0 89 552-646 241-335 (436)
478 cd01121 Sms Sms (bacterial rad 97.3 0.0016 3.5E-08 72.6 11.2 120 549-674 79-209 (372)
479 TIGR03015 pepcterm_ATPase puta 97.2 0.0023 5E-08 68.2 11.7 23 552-574 43-65 (269)
480 PRK07952 DNA replication prote 97.2 0.00093 2E-08 70.1 8.3 105 553-674 100-204 (244)
481 PRK05703 flhF flagellar biosyn 97.2 0.0014 3E-08 74.6 10.3 87 551-644 220-312 (424)
482 PRK03918 chromosome segregatio 97.2 0.00067 1.5E-08 85.0 8.5 73 613-687 787-866 (880)
483 TIGR03881 KaiC_arch_4 KaiC dom 97.2 0.0035 7.6E-08 65.2 12.5 26 549-574 17-42 (229)
484 PRK01156 chromosome segregatio 97.2 0.00078 1.7E-08 84.4 8.9 78 611-688 798-883 (895)
485 PRK06921 hypothetical protein; 97.2 0.0017 3.6E-08 69.3 10.0 101 552-674 117-224 (266)
486 PRK12727 flagellar biosynthesi 97.2 0.0016 3.6E-08 74.5 10.5 87 550-643 348-440 (559)
487 PLN03210 Resistant to P. syrin 97.2 0.00076 1.7E-08 86.5 8.7 28 547-574 202-229 (1153)
488 TIGR00416 sms DNA repair prote 97.2 0.0022 4.7E-08 73.6 11.5 121 549-675 91-222 (454)
489 cd02023 UMPK Uridine monophosp 97.1 0.0002 4.4E-09 72.8 2.1 22 554-575 1-22 (198)
490 TIGR03499 FlhF flagellar biosy 97.1 0.00095 2.1E-08 71.9 7.3 85 550-641 192-282 (282)
491 PTZ00454 26S protease regulato 97.1 0.0023 5.1E-08 72.0 10.7 24 552-575 179-202 (398)
492 PRK11823 DNA repair protein Ra 97.1 0.0022 4.7E-08 73.5 10.5 120 549-674 77-207 (446)
493 TIGR02237 recomb_radB DNA repa 97.1 0.0042 9.1E-08 63.6 11.7 41 549-589 9-50 (209)
494 cd01122 GP4d_helicase GP4d_hel 97.1 0.002 4.4E-08 68.8 9.7 34 543-576 21-54 (271)
495 TIGR00618 sbcc exonuclease Sbc 97.1 0.00096 2.1E-08 84.8 8.0 72 609-682 945-1027(1042)
496 PRK12723 flagellar biosynthesi 97.1 0.0029 6.4E-08 70.7 10.9 87 551-644 173-267 (388)
497 PTZ00132 GTP-binding nuclear p 97.1 0.0015 3.3E-08 67.2 8.0 34 628-662 167-205 (215)
498 PF13481 AAA_25: AAA domain; P 97.1 0.0031 6.7E-08 63.6 10.1 28 550-577 30-57 (193)
499 TIGR03880 KaiC_arch_3 KaiC dom 97.1 0.005 1.1E-07 63.9 11.8 123 549-675 13-154 (224)
500 PRK10416 signal recognition pa 97.1 0.003 6.5E-08 69.0 10.5 27 550-576 112-138 (318)
No 1
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-132 Score=1177.11 Aligned_cols=711 Identities=31% Similarity=0.483 Sum_probs=611.9
Q ss_pred cccc-ccCCCCCeEEEEecCCceeehhHHHHHHHHhcCccccccccCCCC-CCcceEEeccCChHHHHHHHHhcc-----
Q psy5289 4 YLFF-FPQKSKTTIRFFNRVEFYCVHGEDAELIQRKSNVVYLVKTMGQKD-KTLETVLVNKSNLSCFSHILCVIS----- 76 (813)
Q Consensus 4 ~~~~-lk~k~~d~ilffr~GDFYe~f~eDA~~~a~~t~~~~~~~~~g~~~-~gvp~~~~~~~~~~~yi~~L~~~~----- 76 (813)
-||| ||++||||+||||||||||+||+||+.||+.... .++..|.-| ||||||++ +.|+.+||..|
T Consensus 11 ~qy~~ik~~~~d~llffr~GdfYelf~~DA~~~s~~l~i--tlT~r~~~pm~gvP~h~~-----~~yl~~li~~g~kVAi 83 (843)
T COG0249 11 QQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDI--TLTKRGNIPMAGVPYHAL-----DYYLAKLIELGYKVAI 83 (843)
T ss_pred HHHHHHHHhCCccEEEEecccchhhhHHHHHHHHHhhCc--eeecCCCCcCCCCccccH-----HHHHHHHHhCCCeEEE
Confidence 4566 9999999999999999999999999999991111 122233345 89999999 99999999974
Q ss_pred ------------------------Cceeeeccc--------------CC-eEEEEEEECCCCeEEeeecCCchhHHHHHH
Q psy5289 77 ------------------------EDKTLETVL--------------TN-TVGVAIVDLDTKKFYMGEIPDDDYYSNLEA 117 (813)
Q Consensus 77 ------------------------~~~~~e~~l--------------~~-~vGiA~~D~stge~~~~ef~D~~~~~~L~s 117 (813)
||+..+.++ .. .+|+||+|+|||+|+++++. +..+.+
T Consensus 84 ceQ~e~~~~~k~~v~R~v~rv~TpGt~~d~~~l~~~~~n~l~a~~~~~~~~~gla~~dlstGef~~~~~~----~~~l~~ 159 (843)
T COG0249 84 CEQLEDPAEAKGVVERKVVRVVTPGTLTDEALLSDRENNYLAALAIDRDGKVGLAFIDLSTGEFFVSEFE----REKLLS 159 (843)
T ss_pred EEcccChhhhcCcceeEEEEEECCCeeeccccccccccceEEEEEecCCCEEEEEEEEcccCeEEEEEee----HHHHHH
Confidence 444322222 23 69999999999999999997 678999
Q ss_pred HHHhcCCcEEEeCCCCCCcchhHHHHhhhcCCeeeeccCCCCCChhHHHHHHHHhhccccchhhhccccccccchhHHHH
Q psy5289 118 IIVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHC 197 (813)
Q Consensus 118 ~L~~~~P~Eili~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~~~~~~~L~~l~~~~~~~~~~~~~l~~~~~~~a~~A 197 (813)
.|.+++|+|||++....+.. +.... ..+.++..+.|.|+...+.+.+...++. ....+++....+.+++|
T Consensus 160 ~l~r~~p~Eil~~~~~~~~~---~~~~~--~~~~~~~~~~~~f~~~~~~~~l~~~~~~-----~~l~~~~~~~~~~~~~a 229 (843)
T COG0249 160 ELKRLQPKELLLSESLLSST---LAEIQ--KGLFVVRLPASFFDEDDAEEILSEYFGV-----RDLDGFGLISTPLALSA 229 (843)
T ss_pred HHHhCCCcEEEeccccCchh---hhhhh--hceeeeecchhhcCccHHHHHHHHHhCc-----ccccccccccchHHHHH
Confidence 99999999999997411111 11211 1225677888999988888888888862 12333433446889999
Q ss_pred HHHHHHHHHHhcCCCCCCcceeEEeccCCeEeeCHHHHhhcccccccCCCccccccchhhhhhcccCchhHHHHHHHhhC
Q psy5289 198 LRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQ 277 (813)
Q Consensus 198 ~gaLL~YL~~~~~~~~~~~~~i~~~~~~~~M~LD~~Tl~~LeI~~~~~~~~~k~~~SLf~lLn~t~T~~G~RlLr~wL~~ 277 (813)
+|+++.|++.++.....+...+..+...++|.||.+|++||||++|.++++ + +||||++||+|+||||+|+|++||.+
T Consensus 230 ~~~ll~Y~~~t~~~~l~~~~~~~~~~~~~~m~lD~~t~~nLEl~~~~~~~~-~-~gSL~~~ld~t~T~mG~RlL~~wl~~ 307 (843)
T COG0249 230 AGALLSYLKDTQKTFLPHIQIIQRYDLEDYMVLDAATRRNLELFSNLRGNG-K-KGSLFWLLDRTVTPMGSRLLKRWLLQ 307 (843)
T ss_pred HHHHHHHHHHhhhccccccccceeeccCcEEEEcHHHHhcccccccCCCCC-C-CCcHHHHhccCCCchhHHHHHHHhhC
Confidence 999999999988755445567889999999999999999999999988754 4 78999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCcHHHHHHHHhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHhhH
Q psy5289 278 PLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNV 357 (813)
Q Consensus 278 PL~d~~~I~~R~d~Ve~l~~~~~lr~~l~~~~Lk~i~Dlerll~rl~~~~~~~~d~~~l~~~l~~l~~l~~~l~~~~~~~ 357 (813)
||+|.++|+.|||+|++|..+..+|+.++. .|+++||++|+++|+..++++++|+.++.+++..+|.+...+.......
T Consensus 308 PL~~~~~I~~Rld~Ve~l~~~~~l~~~L~~-~L~~v~DleRl~~Rl~~~~~~~rDl~~l~~~l~~~~~i~~~l~~~~~~~ 386 (843)
T COG0249 308 PLLDKEEIEERLDAVEELKDNPELREKLRE-MLKKVPDLERLLSRLSLGRASPRDLLRLRDSLEKIPEIFKLLSSLKSES 386 (843)
T ss_pred cccCHHHHHHHHHHHHHHHhhhHHHHHHHH-HHhcCcCHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHHhccccch
Confidence 999999999999999999999999999997 9999999999999999999999999999999999999998877511000
Q ss_pred -h---HH------hHHHHHHhhhh--------hhh--h------HHHHHHHHHHH---H----HHHHHHHHhCcccccce
Q psy5289 358 -E---AS------NLNTILSSLQS--------LKM--M------DRKDAVMDKMK---E----YLESTARRLNLVADKTI 404 (813)
Q Consensus 358 -~---~~------~l~~~~~~~~~--------~~~--~------~~l~~l~~~~~---~----~~~~~~~~~~~~~~~~l 404 (813)
+ .. .+.++...+.. ... + .+||++++..+ + +..+.++++|+ +++
T Consensus 387 ~l~~~~~~i~~~~~~~e~~~ll~~~i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~~~i~~le~~~r~~~gi---~sl 463 (843)
T COG0249 387 DLLLLLEDIESLDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWIAKLELEERERTGI---KSL 463 (843)
T ss_pred hhhHHhhhhhccccHHHHHHHHHHHhhhcchhhcchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chh
Confidence 0 00 00011111000 000 0 55666654433 2 22233455777 579
Q ss_pred eEeecCc-ceEEEEecccccccCcCceEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q psy5289 405 KLENSPQ-GFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLN 483 (813)
Q Consensus 405 k~~~~~~-gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~ 483 (813)
|+.+|++ |||++|++.....+|.+|++.++++|..||+|++++++++++.++++++..+|.+++.++.+.+..|.+.|+
T Consensus 464 ki~~n~v~Gy~ievt~~~~~~~p~~~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~lE~~l~~~~~~~i~~~~~~l~ 543 (843)
T COG0249 464 KIKYNKVYGYYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPELKELEEKLLDAEEKILALEYELFDELREKILAHINELQ 543 (843)
T ss_pred hhhhhccceeEEEechhccccCchHHHHHHHHhcceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCCcceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCC
Q psy5289 484 QLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMG 563 (813)
Q Consensus 484 ~~~~~ia~LD~l~S~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgs 563 (813)
.++.++|+|||++|||..|.. .+||||++++. ..+.|++||||++|...+..|||||++++. .+++++|||||||
T Consensus 544 ~~a~aLa~lD~l~slA~~a~~--~~y~rP~~~~~--~~l~i~~gRHPvvE~~~~~~fVpNd~~L~~-~~~i~lITGPNM~ 618 (843)
T COG0249 544 ALAKALAELDVLSSLAEIAAE--QNYVRPEFVDS--NDLEIKEGRHPVVEAVLDNGFVPNDIDLSG-NRRIILITGPNMG 618 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--CCCCCceecCC--CCEEEEecCcchhhhhccCCcccCceeeCC-CceEEEEECCCCC
Confidence 999999999999999999977 89999999873 239999999999998765559999999996 6799999999999
Q ss_pred ChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCC
Q psy5289 564 GKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRG 643 (813)
Q Consensus 564 GKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~G 643 (813)
||||||||+|++++|||+||||||+.+.++++|+||||+|+.|++..|.||||+||.+++.|+..||++|||||||.|||
T Consensus 619 GKSTylRQvali~imAQiGsfVPA~~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRG 698 (843)
T COG0249 619 GKSTYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRG 698 (843)
T ss_pred ccHHHHHHHHHHHHHHHcCCCeeHHHccccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCeEEEEEEeccCCCCCcHHHHHHHH
Q psy5289 644 TSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKM 723 (813)
Q Consensus 644 td~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i~~~y~l~~G~~~~s~gi~vA~~ 723 (813)
|++.||.+|||++++||+++.+|.+||||||||++.+....+.+.|+||.+...+++++|+|++++|+|++||||+||++
T Consensus 699 TsT~DGlaIA~Av~eyL~~~~~~~tLFATHy~ELt~l~~~~~~v~N~h~~~~e~~~~i~Fl~kv~~G~a~~SyGi~VAkl 778 (843)
T COG0249 699 TSTYDGLAIAWAVLEYLHEKIGCRTLFATHYHELTELEEKLPQVKNYHMSAVEEGGDITFLYKVKPGIADKSYGIHVAKL 778 (843)
T ss_pred CCcchhHHHHHHHHHHHHhccCceEEEeccHHHHHHhhhcccccceeEEEEEEcCCceEEEEEeccCCCCccHHHHHHHH
Confidence 99999999999999999986699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhc
Q psy5289 724 AGYPEDMLEQARDLMKEYEYSLD 746 (813)
Q Consensus 724 ag~p~~vi~~A~~~~~~le~~~~ 746 (813)
||+|.+||+||++++.+||....
T Consensus 779 aGlP~~Vi~rA~~il~~le~~~~ 801 (843)
T COG0249 779 AGLPEEVIERAREILAELEKESR 801 (843)
T ss_pred hCCCHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999998764
No 2
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=2.4e-126 Score=1145.24 Aligned_cols=702 Identities=29% Similarity=0.464 Sum_probs=601.1
Q ss_pred ccccc-ccCCCCCeEEEEecCCceeehhHHHHHHHH-----hcCccccccccC--C-CC-CCcceEEeccCChHHHHHHH
Q psy5289 3 FYLFF-FPQKSKTTIRFFNRVEFYCVHGEDAELIQR-----KSNVVYLVKTMG--Q-KD-KTLETVLVNKSNLSCFSHIL 72 (813)
Q Consensus 3 f~~~~-lk~k~~d~ilffr~GDFYe~f~eDA~~~a~-----~t~~~~~~~~~g--~-~~-~gvp~~~~~~~~~~~yi~~L 72 (813)
+.||| +|++|||||||||||||||+||+||++||+ +|.+ ..| . -| ||||+|++ +.|+++|
T Consensus 12 ~~Qy~~iK~~~~D~ilffr~GdFYElf~eDA~~~s~~L~i~lt~r-----~~~~~~~~pm~GvP~h~~-----~~yl~kL 81 (854)
T PRK05399 12 MQQYLEIKAQYPDALLFFRMGDFYELFFEDAKKASRLLDITLTKR-----GKSAGEPIPMAGVPYHAA-----EGYLAKL 81 (854)
T ss_pred HHHHHHHHhhCCCEEEEEEcCCEEEEeHhhHHHHHHHhCeEEeec-----cCCCCCCCCEecCcHHHH-----HHHHHHH
Confidence 45777 999999999999999999999999999999 4443 222 1 14 99999999 9999999
Q ss_pred Hhcc-----------------------------Cceeeeccc--------------CCeEEEEEEECCCCeEEeeecCCc
Q psy5289 73 CVIS-----------------------------EDKTLETVL--------------TNTVGVAIVDLDTKKFYMGEIPDD 109 (813)
Q Consensus 73 ~~~~-----------------------------~~~~~e~~l--------------~~~vGiA~~D~stge~~~~ef~D~ 109 (813)
|.+| ||+..++++ ...+|+||+|+|||+|++++|
T Consensus 82 v~~GyKVaI~EQ~e~~~~~k~~v~R~v~~i~TpGT~~~~~~l~~~~~~yl~ai~~~~~~~Gia~~D~stg~~~~~~~--- 158 (854)
T PRK05399 82 VKKGYKVAICEQVEDPATAKGPVKREVVRIVTPGTVTDEALLDEKQNNYLAAIAQDGGGYGLAYLDLSTGEFRVTEL--- 158 (854)
T ss_pred HHCCCEEEEEEecCChhhcCCccceEEEEEECCCeeecccccCCCCCcEEEEEEECCCeEEEEEEECCCCeEEEEEE---
Confidence 9885 333222222 357999999999999999999
Q ss_pred hhHHHHHHHHHhcCCcEEEeCCCCCCcchhHHHHhhhcCCeeeeccCCCCCChhHHHHHHHHhhccccchhhhccccccc
Q psy5289 110 DYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEM 189 (813)
Q Consensus 110 ~~~~~L~s~L~~~~P~Eili~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~~~~~~~L~~l~~~~~~~~~~~~~l~~~ 189 (813)
.+++|++.|.+++|+|||++++ .... .+.. ....+...+.+.|+.+.+.+.|.++++. .+...++.
T Consensus 159 -~~~~L~~~l~~~~P~Eil~~~~-~~~~--~~~~----~~~~~~~~~~~~f~~~~~~~~l~~~f~~-----~~~~~~~~- 224 (854)
T PRK05399 159 -DEEELLAELARLNPAEILVPED-FSED--ELLL----LRRGLRRRPPWEFDLDTAEKRLLEQFGV-----ASLDGFGV- 224 (854)
T ss_pred -cHHHHHHHHHhcCCcEEEEcCC-cchh--hHhh----ccccceeccccccChHHHHHHHHHHhCc-----CCccccCC-
Confidence 2678999999999999999864 2111 1111 1223344566788888888888888752 11222222
Q ss_pred cchhHHHHHHHHHHHHHHhcCCCCCCc-ceeEEeccCCeEeeCHHHHhhcccccccCCCccccccchhhhhhcccCchhH
Q psy5289 190 CLTTATHCLRSLINYLELMNNEDNMNQ-FSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGH 268 (813)
Q Consensus 190 ~~~~a~~A~gaLL~YL~~~~~~~~~~~-~~i~~~~~~~~M~LD~~Tl~~LeI~~~~~~~~~k~~~SLf~lLn~t~T~~G~ 268 (813)
..+.+++|+|+++.|++.++... ..+ .++..+..+++|.||++|++||||+++..++ + ++|||++||||+||||+
T Consensus 225 ~~~~~~~a~~all~Yl~~~~~~~-~~~~~~~~~~~~~~~m~lD~~tl~~Lei~~~~~~~--~-~gSL~~~ld~t~T~~G~ 300 (854)
T PRK05399 225 DLPLAIRAAGALLQYLKETQKRS-LPHLRSPKRYEESDYLILDAATRRNLELTENLRGG--R-KNSLLSVLDRTVTAMGG 300 (854)
T ss_pred CCHHHHHHHHHHHHHHHHhchhh-hhccCCCEEECCCCEEEcCHHHHHhccCCccCCCC--C-CCcHHHHhccCCCcHHH
Confidence 55779999999999999987632 333 3688899999999999999999999997654 3 67999999999999999
Q ss_pred HHHHHHhhCcCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCcHHHHHHHHhccCCCHHHHHHHHHHHhhHHHHHH
Q psy5289 269 RLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLIS 348 (813)
Q Consensus 269 RlLr~wL~~PL~d~~~I~~R~d~Ve~l~~~~~lr~~l~~~~Lk~i~Dlerll~rl~~~~~~~~d~~~l~~~l~~l~~l~~ 348 (813)
|+||+||++||+|+++|++|||+|++|.+|+.++..++. .|+++||++|+++|+..++++++|+..+++++..++.+.+
T Consensus 301 RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~-~L~~i~Dlerll~ri~~~~~~~~dl~~l~~~l~~~~~l~~ 379 (854)
T PRK05399 301 RLLRRWLHRPLRDREAIEARLDAVEELLEDPLLREDLRE-LLKGVYDLERLLSRIALGRANPRDLAALRDSLEALPELKE 379 (854)
T ss_pred HHHHHHHhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHH-HHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 9999999999999999999999999999999999999888
Q ss_pred HHHHH----HhhHh--HHhHHHHHHhhhhhhh------------h-----HHHHHHHHHHH-------HHHHHHHHHhCc
Q psy5289 349 ILESL----VQNVE--ASNLNTILSSLQSLKM------------M-----DRKDAVMDKMK-------EYLESTARRLNL 398 (813)
Q Consensus 349 ~l~~~----~~~~~--~~~l~~~~~~~~~~~~------------~-----~~l~~l~~~~~-------~~~~~~~~~~~~ 398 (813)
.+... +.... ...+.++...+....+ + ++||++++.++ +..++.++.+++
T Consensus 380 ~l~~~~~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~ 459 (854)
T PRK05399 380 LLAELDSPLLAELAEQLDPLEELADLLERAIVEEPPLLIRDGGVIADGYDAELDELRALSDNGKDWLAELEARERERTGI 459 (854)
T ss_pred HHHhcCcHHHHHHHhhcccHHHHHHHHHHHHccCCchhcccCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77541 11100 1112222211111100 0 56676665443 333344455676
Q ss_pred ccccceeEeecCc-ceEEEEecccccccCcCceEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5289 399 VADKTIKLENSPQ-GFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAG 477 (813)
Q Consensus 399 ~~~~~lk~~~~~~-gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 477 (813)
+++++.|+++ ||+|+|++.....+|++|++.+++++.+||+|++++++++++.++.+++...+.+++.++.+.+.+
T Consensus 460 ---~~l~~~~~~~~gy~iev~~~~~~~vp~~~~~~~s~~~~~rf~t~~l~~l~~~l~~~~~~~~~~e~~i~~~l~~~i~~ 536 (854)
T PRK05399 460 ---SSLKVGYNKVFGYYIEVTKANLDKVPEDYIRRQTLKNAERYITPELKELEDKILSAEEKALALEYELFEELREEVAE 536 (854)
T ss_pred ---CceEEEEcCceeEEEEEEcchhhhCChhhhheeeccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999 999999998888899889999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCCcceEEEEccccCeeEec-CCceeeccccccccCCceeEE
Q psy5289 478 YTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQ-GGVSYIPNDVYFKSGEVSFNL 556 (813)
Q Consensus 478 ~~~~l~~~~~~ia~LD~l~S~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~e~~-~~~~~i~n~v~l~~~~g~~~~ 556 (813)
+.+.|..+++++|+|||++|||.+|.. ++||||++.+ ++.+.|+++|||++|.. .+..|||||+.++ +.+++++
T Consensus 537 ~~~~l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~--~~~l~i~~~rHP~le~~~~~~~~vpnd~~l~-~~~~~~i 611 (854)
T PRK05399 537 HIERLQKLAKALAELDVLASLAEVAEE--NNYVRPEFTD--DPGIDIEEGRHPVVEQVLGGEPFVPNDCDLD-EERRLLL 611 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--CCccccEEeC--CCCEEEEeccCcEEecccCCCceEecceeeC-CCCcEEE
Confidence 999999999999999999999999998 8899999986 35799999999999975 3467999999999 5678999
Q ss_pred EEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCCCCcEEE
Q psy5289 557 VTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVI 636 (813)
Q Consensus 557 itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~~Lll 636 (813)
||||||||||||||++|++++|||+||||||..++++++|+||+|+|+.|++..|.||||.||.+++.|+..+++++|||
T Consensus 612 iTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvl 691 (854)
T PRK05399 612 ITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVL 691 (854)
T ss_pred EECCCCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCeEEEEEEeccCCCCCcH
Q psy5289 637 IDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSY 716 (813)
Q Consensus 637 lDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i~~~y~l~~G~~~~s~ 716 (813)
||||||||++.||.++++++++++.+..+|++||+||++++..++++.+.+.|+||.+...+++++|+||+.+|+|++||
T Consensus 692 lDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~l~~~~~~v~n~~m~~~~~~~~l~flYkl~~G~~~~Sy 771 (854)
T PRK05399 692 LDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEKLPGVKNVHVAVKEHGGDIVFLHKVVPGAADKSY 771 (854)
T ss_pred EecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHHHhhhcCCeEEEEEEEEEeCCeEEEEEEeCcCCCCCcH
Confidence 99999999999999999999999998557999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhh
Q psy5289 717 GVHCAKMAGYPEDMLEQARDLMKEYEYS 744 (813)
Q Consensus 717 gi~vA~~ag~p~~vi~~A~~~~~~le~~ 744 (813)
||+||++||+|++||+||++++++|++.
T Consensus 772 Gi~VA~laGlP~~VI~rA~~i~~~le~~ 799 (854)
T PRK05399 772 GIHVAKLAGLPASVIKRAREILAQLESA 799 (854)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999964
No 3
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=1.5e-126 Score=1139.78 Aligned_cols=697 Identities=28% Similarity=0.470 Sum_probs=592.1
Q ss_pred ccccc-ccCCCCCeEEEEecCCceeehhHHHHHHHH-----hcCccccccccCC-CC-CCcceEEeccCChHHHHHHHHh
Q psy5289 3 FYLFF-FPQKSKTTIRFFNRVEFYCVHGEDAELIQR-----KSNVVYLVKTMGQ-KD-KTLETVLVNKSNLSCFSHILCV 74 (813)
Q Consensus 3 f~~~~-lk~k~~d~ilffr~GDFYe~f~eDA~~~a~-----~t~~~~~~~~~g~-~~-~gvp~~~~~~~~~~~yi~~L~~ 74 (813)
+.||| +|++|||||||||||||||||||||++||+ +|.++ +..|. .| ||||+|++ +.|+++||.
T Consensus 5 ~~Qy~~iK~~~~D~iLffr~GdFYElf~eDA~~~a~~L~i~lt~r~---~~~~~~~pm~GvP~ha~-----~~yl~kLv~ 76 (840)
T TIGR01070 5 MQQYLKLKAEHPDALLFFRMGDFYELFYEDAKKAAQLLDISLTSRG---QSADEPIPMAGIPYHAV-----EAYLEKLVK 76 (840)
T ss_pred HHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCeEEeecC---CCCCCCCCcccCCHHHH-----HHHHHHHHH
Confidence 46788 999999999999999999999999999999 45431 11111 24 99999999 999999999
Q ss_pred cc-----------------------------Cceeeeccc--------------CCeEEEEEEECCCCeEEeeecCCchh
Q psy5289 75 IS-----------------------------EDKTLETVL--------------TNTVGVAIVDLDTKKFYMGEIPDDDY 111 (813)
Q Consensus 75 ~~-----------------------------~~~~~e~~l--------------~~~vGiA~~D~stge~~~~ef~D~~~ 111 (813)
.| ||+..+++| ...+|+||+|+|||+|++++|.|+
T Consensus 77 ~G~kVai~eQ~e~~~~~kg~v~Rev~ri~TpGT~~~~~~l~~~~~nyl~ai~~~~~~~gla~~D~sTG~~~~~~~~d~-- 154 (840)
T TIGR01070 77 QGESVAICEQIEDPKTAKGPVEREVVQLITPGTVSDEALLPERQDNLLAAIAQESNGFGLATLDLTTGEFKVTELADK-- 154 (840)
T ss_pred CCCEEEEEEecCCchhcCCceeeEEEEEECCCcccccccccCCCCceEEEEEeCCCeEEEEEEEccccEEEEEEecCH--
Confidence 85 332222222 346999999999999999999874
Q ss_pred HHHHHHHHHhcCCcEEEeCCCCCCcchhHHHHhhhcCCeeeeccCCCCCChhHHHHHHHHhhccccchhhhccccccccc
Q psy5289 112 YSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCL 191 (813)
Q Consensus 112 ~~~L~s~L~~~~P~Eili~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~~~~~~~L~~l~~~~~~~~~~~~~l~~~~~ 191 (813)
+.|.++|.+++|+|||++.+ .... ....+ + .|+...+...+...++. .....+...+.
T Consensus 155 -~~l~~~l~~~~P~Eil~~~~-~~~~---~~~~~-------~-----~f~~~~~~~~l~~~f~~-----~~l~~~~~~~~ 212 (840)
T TIGR01070 155 -ETLYAELQRLNPAEVLLAED-LSEM---EAIEL-------R-----EFRKDTAVMSLEAQFGT-----EDLGGLGLRNA 212 (840)
T ss_pred -HHHHHHHhccCCeEEEEcCC-CChH---HHHHh-------H-----hcchhHHHHHHHHhcCc-----cchhhcCCCCC
Confidence 35889999999999999864 2111 11111 1 35544455556665542 11222333345
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCcc-eeEEeccCCeEeeCHHHHhhcccccccCCCccccccchhhhhhcccCchhHHH
Q psy5289 192 TTATHCLRSLINYLELMNNEDNMNQF-SIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRL 270 (813)
Q Consensus 192 ~~a~~A~gaLL~YL~~~~~~~~~~~~-~i~~~~~~~~M~LD~~Tl~~LeI~~~~~~~~~k~~~SLf~lLn~t~T~~G~Rl 270 (813)
+.+++|+|++++|++.++... ..++ .++.+..+++|.||++|++||||++|..++ + ++|||++||+|+||||+|+
T Consensus 213 ~~~~~a~g~ll~Yl~~~~~~~-~~~~~~~~~~~~~~~m~lD~~t~~~LEl~~~~~~~--~-~gSL~~~ld~t~T~~G~Rl 288 (840)
T TIGR01070 213 PLGLTAAGCLLQYAKRTQRTA-LPHLQPVRLYELQDFMQLDAATRRNLELTENLRGG--K-QNTLFSVLDETKTAMGSRL 288 (840)
T ss_pred HHHHHHHHHHHHHHHHhChhh-hhhCCCcEEECCCCEEEeCHHHHHhccCCccCCCC--C-CCcHHHHHhhcCCHHHHHH
Confidence 678999999999999987643 3333 578899999999999999999999987754 4 7899999999999999999
Q ss_pred HHHHhhCcCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCcHHHHHHHHhccCCCHHHHHHHHHHHhhHHHHHHHH
Q psy5289 271 LAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISIL 350 (813)
Q Consensus 271 Lr~wL~~PL~d~~~I~~R~d~Ve~l~~~~~lr~~l~~~~Lk~i~Dlerll~rl~~~~~~~~d~~~l~~~l~~l~~l~~~l 350 (813)
||+||++|++|+++|++|||+|++|.+++.++..++. .|+++||++|+++|+..++++++|++.+++++..++.+.+.+
T Consensus 289 Lr~wl~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~l~~-~L~~i~Dlerll~ri~~~~~~~~dl~~l~~~l~~~~~l~~~l 367 (840)
T TIGR01070 289 LKRWLHRPLRDREVLEARQDTVEVLLRHFFLREGLRP-LLKEVGDLERLAARVALGNARPRDLARLRTSLEQLPELRALL 367 (840)
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHhCHHHHHHHHH-HhccCcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999999999998877
Q ss_pred HHH----HhhH--hHHhHHHHHHhhhhhhh------------h-----HHHHHHHHHHHHHH---H----HHHHHhCccc
Q psy5289 351 ESL----VQNV--EASNLNTILSSLQSLKM------------M-----DRKDAVMDKMKEYL---E----STARRLNLVA 400 (813)
Q Consensus 351 ~~~----~~~~--~~~~l~~~~~~~~~~~~------------~-----~~l~~l~~~~~~~~---~----~~~~~~~~~~ 400 (813)
... +... ....+.++.+.+....+ + ++||++++..++.. . +.++.+++
T Consensus 368 ~~~~~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~~Ld~lr~~~~~~~~~l~~l~~~~~~~~~i-- 445 (840)
T TIGR01070 368 EELEGPTLQALAAQIDDFSELLELLEAALIENPPLVVRDGGLIREGYDEELDELRAASREGTDYLARLEARERERTGI-- 445 (840)
T ss_pred HhcCcHHHHHHHHhcccHHHHHHHHHHHHhcCCccccccCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--
Confidence 641 1100 00111222211111110 0 66777766544332 2 23355677
Q ss_pred ccceeEeecCc-ceEEEEecccccccCcCceEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Q psy5289 401 DKTIKLENSPQ-GFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYT 479 (813)
Q Consensus 401 ~~~lk~~~~~~-gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 479 (813)
+++++.|+++ ||+|+|++.....+|.+|++.+++++.+||+|++++++++++.++.+++...+.+++.++.+.+.++.
T Consensus 446 -~~lk~~~~~~~gy~iev~~~~~~~vp~~~i~~~s~~~~~rf~tpel~~l~~~l~~~~~~~~~~e~~i~~~L~~~i~~~~ 524 (840)
T TIGR01070 446 -PTLKVGYNAVFGYYIEVTRGQLHLVPAHYRRRQTLKNAERYITPELKEKEDKVLEAEGKILALEKELFEELRELLKKYL 524 (840)
T ss_pred -CceEEEEecCceEEEEEehhhhhcCCcceEEEEeccCceEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999 99999999888889988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCCcceEEEEccccCeeEecCCceeeccccccccCCceeEEEEc
Q psy5289 480 QTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTG 559 (813)
Q Consensus 480 ~~l~~~~~~ia~LD~l~S~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itG 559 (813)
+.|..+++++|+|||++|||.+|.+ ++||||++.+ ++.+.|+++|||++|......|||||+.++. .+++++|||
T Consensus 525 ~~l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~--~~~i~i~~~RHP~le~~~~~~~VpNdi~l~~-~~~~~iITG 599 (840)
T TIGR01070 525 EALQEAARALAELDVLANLAEVAET--LHYTRPRFGD--DPQLRIREGRHPVVEQVLRTPFVPNDLEMAH-NRRMLLITG 599 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--CCCcCceecC--CCcEEEEeeECHHHHhccCCCeEeeeeecCC-CccEEEEEC
Confidence 9999999999999999999999998 8899999986 3579999999999986544579999999984 468999999
Q ss_pred cCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeC
Q psy5289 560 PNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDE 639 (813)
Q Consensus 560 pNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDE 639 (813)
|||||||||||++|++++|||+||||||..++++++|+||+|+|+.|++..|.||||.||.+++.|++.++++||||+||
T Consensus 600 PNmgGKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE 679 (840)
T TIGR01070 600 PNMGGKSTYMRQTALIALLAQIGSFVPAESAELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDE 679 (840)
T ss_pred CCCCCchHHHHHHHHHHHHHhcCCCccchheEeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCeEEEEEEeccCCCCCcHHHH
Q psy5289 640 LGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVH 719 (813)
Q Consensus 640 p~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i~~~y~l~~G~~~~s~gi~ 719 (813)
+|+||++.||.++++++++++.+..+|.+||+||+++++.+.+..+++.|+||.+..++++++|+|++.+|++++||||+
T Consensus 680 ~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l~~~~~~v~n~~~~~~~~~~~l~flYkl~~G~~~~Sygi~ 759 (840)
T TIGR01070 680 IGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTALEESLPGLKNVHVAALEHNGTIVFLHQVLPGPASKSYGLA 759 (840)
T ss_pred CCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHHhhhCCCeEEEEEEEEEECCcEEEEEEECCCCCCCcHHHH
Confidence 99999999999999999999997569999999999999999999999999999998889999999999999999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHhh
Q psy5289 720 CAKMAGYPEDMLEQARDLMKEYEYS 744 (813)
Q Consensus 720 vA~~ag~p~~vi~~A~~~~~~le~~ 744 (813)
||++||+|++||+||++++++||..
T Consensus 760 VA~laGlP~~VI~rA~~il~~le~~ 784 (840)
T TIGR01070 760 VAALAGLPKEVIARARQILTQLEAR 784 (840)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999964
No 4
>KOG0219|consensus
Probab=100.00 E-value=1.8e-122 Score=1027.67 Aligned_cols=736 Identities=44% Similarity=0.732 Sum_probs=665.4
Q ss_pred Cccccc--ccCCCCCeEEEEecCCceeehhHHHHHHHH---hcCccccccccCCCC-CCcceEEeccCChHHHHHHHHhc
Q psy5289 2 KFYLFF--FPQKSKTTIRFFNRVEFYCVHGEDAELIQR---KSNVVYLVKTMGQKD-KTLETVLVNKSNLSCFSHILCVI 75 (813)
Q Consensus 2 ~f~~~~--lk~k~~d~ilffr~GDFYe~f~eDA~~~a~---~t~~~~~~~~~g~~~-~gvp~~~~~~~~~~~yi~~L~~~ 75 (813)
+|++|| +++ +.+||+||++||||++|||||.+||+ +|.. ++|+.+... .-..++++|+++|+.++|.|+..
T Consensus 18 ~f~~f~~~l~~-p~~tvr~fdrge~ytv~geDa~~va~~v~kt~~--~~k~l~~~~~~~~~~v~ls~~~~e~~vr~~l~~ 94 (902)
T KOG0219|consen 18 NFLKFYEGLPK-PTTTVRFFDRGEYYTVHGEDAEFVARNVYKTQA--VIKTLSPDNAKNTKEVSLSKGNFEKVVRELLLV 94 (902)
T ss_pred HHHHHHhcCCC-CCceEEEecCcceEEEeccchhhhhhhhhhhhh--hheecCCcccccceEEEecHHHHHHHHHHHHHH
Confidence 689999 666 88999999999999999999999999 7776 788776554 45688999999999999999877
Q ss_pred c-----------Ccee------------eeccc----------------------CCeEEEEEEECCCCeEEeeecCCch
Q psy5289 76 S-----------EDKT------------LETVL----------------------TNTVGVAIVDLDTKKFYMGEIPDDD 110 (813)
Q Consensus 76 ~-----------~~~~------------~e~~l----------------------~~~vGiA~~D~stge~~~~ef~D~~ 110 (813)
. +.|. ++|++ ++.+|+|++|++...+++++|.||+
T Consensus 95 ~~~~Ve~y~~~~~~w~l~~~~sPGN~~~fedll~~~~~v~is~~~~~v~~~~~~~~~~vgv~~~d~~~~k~~~~ef~Dn~ 174 (902)
T KOG0219|consen 95 LRYRVEVYSSNQGDWKLTKRGSPGNLVQFEDLLFSNNDVPISIISLIVKHPGVDGQRRVGVAFVDTINVKIGLSEFVDDD 174 (902)
T ss_pred hccceEEeecCccceeEEecCCCCcHHHHHHHHcccccchhhhhheeEEeeccCCCceeEEEEechhheeeehhhhcCcH
Confidence 1 3343 34443 5689999999999999999999999
Q ss_pred hHHHHHHHHHhcCCcEEEeCCCCCCcchhHHHHhhhcCCeeeeccCCCCCChhHHHHHHHHhhccccchhhhcccccccc
Q psy5289 111 YYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMC 190 (813)
Q Consensus 111 ~~~~L~s~L~~~~P~Eili~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~~~~~~~L~~l~~~~~~~~~~~~~l~~~~ 190 (813)
.|++++..+.+++|+|||++.+...++.+++..+++++++.++.+..++|+.++..+++.+.++ + ......+++..
T Consensus 175 ~~snle~~l~~lg~kEcll~~~~~~~~~~kl~~~~~r~g~~~t~~~~~e~~~kdv~~~l~~~l~---~-~~~~~~~~e~~ 250 (902)
T KOG0219|consen 175 SFSNLEALLIQLGPKECVLPEGSVAGEMKKLRNIIDRCGVLITLRKKSESSWKDVEQDLNRLLK---S-QEHAAYLPELE 250 (902)
T ss_pred HHHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhccCeEEEEecccchhHHHHHHHHHhccc---c-hhhhccchHHH
Confidence 9999999999999999999953234556889999999999999999999999999999988876 2 22345567788
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCCCcceeEEeccCCeEeeCHHHHhhcccccccCCCccccccchhh-hhhcccCchhHH
Q psy5289 191 LTTATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLG-ILDRCRTPQGHR 269 (813)
Q Consensus 191 ~~~a~~A~gaLL~YL~~~~~~~~~~~~~i~~~~~~~~M~LD~~Tl~~LeI~~~~~~~~~k~~~SLf~-lLn~t~T~~G~R 269 (813)
..++++++.+++.|+....+..+.+++.+..+....+|.+|.+|.++|++|+...+...+ ..+|.. +||||+|++|.|
T Consensus 251 ~q~a~~~~~~~i~yl~~~~e~~~s~~~ei~~~~~~~~m~ld~~av~alnlf~~~~~~~~~-s~~L~~~~LN~c~t~~G~r 329 (902)
T KOG0219|consen 251 LQLAMSALSALIKYLDLENEYSNSGKYELTNHGLHQFMRLDSAAVRALNLFPLPYNNPEK-SNNLALSLLNHCKTLQGER 329 (902)
T ss_pred hHHHHHHHHHHHHHHhhcccccccceEEEeecchHHHhhHHHHHHHHHhhcCCCCCCccc-cchhhHHHHhhcccccchh
Confidence 899999999999999888777777888999999999999999999999999876554324 568887 999999999999
Q ss_pred HHHHHhhCcCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCcHHHHHHHHhccCCCHHHHHHHHHHHhhHHHHHHH
Q psy5289 270 LLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISI 349 (813)
Q Consensus 270 lLr~wL~~PL~d~~~I~~R~d~Ve~l~~~~~lr~~l~~~~Lk~i~Dlerll~rl~~~~~~~~d~~~l~~~l~~l~~l~~~ 349 (813)
+|++|+.+||+|++.|++|+|.|+.|+.+.+.|+.++.+.|..+||+.|+..|+. .++++|+.++|+....+|.+...
T Consensus 330 ll~~w~~qpL~~~~ri~~r~d~v~~l~~~~~~rq~L~~~lL~~~pdi~rl~~~l~--~~~L~d~~r~yq~~~~l~~~~~~ 407 (902)
T KOG0219|consen 330 LLRQWLKQPLRDIDRINERHDLVEALVEDAEIRQKLRDDLLRRIPDISRLARRLM--KANLQDVNRIYQAAKLLPTVVQV 407 (902)
T ss_pred hhhhhhhcchHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhhcChhHHHhhhhhh--hcchHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999999999999999888999999999999998 78999999999999999999887
Q ss_pred HHHH---HhhHhHHhHHHHHHhhhhhhhh-----------------------------HHHHHHHHHHHHHHHHHHHHhC
Q psy5289 350 LESL---VQNVEASNLNTILSSLQSLKMM-----------------------------DRKDAVMDKMKEYLESTARRLN 397 (813)
Q Consensus 350 l~~~---~~~~~~~~l~~~~~~~~~~~~~-----------------------------~~l~~l~~~~~~~~~~~~~~~~ 397 (813)
|..+ ....+.+++.+....+.+|.++ +.||+++..+.+++.++..+++
T Consensus 408 l~~~~~~~~~ll~~~l~~~~~~~~kf~~~ve~t~D~da~ee~ey~VR~eFdeeL~eLrq~LdeL~~~m~~~hkrv~~dl~ 487 (902)
T KOG0219|consen 408 LISLSESHNRLLKSPLTEHLKKLEKFQEMVETTVDLDAEEENEYRVRVDFDEELQELREKLDELERKMEKLHKKVSADLG 487 (902)
T ss_pred HHhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhhHhHHhcCcEEEecccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 7651 1111222333333333332222 6677788888888999999999
Q ss_pred cccccceeEeecCc-ceEEEEecccccccC--cCceEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5289 398 LVADKTIKLENSPQ-GFAYRITMKLNNSID--DRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGI 474 (813)
Q Consensus 398 ~~~~~~lk~~~~~~-gy~i~v~~~~~~~~~--~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~ 474 (813)
.+.+|.+|++.+.+ |||+++++++.+.++ ++|+.+++.|||++|+|.+|..||+++.+.+.+|...|.+++++++..
T Consensus 488 ~D~~kklkLe~~~~~G~~~RlTr~e~~~LR~~k~y~eLstqK~GV~FTtk~L~slN~e~~~~qk~Y~~~Q~~ivreviki 567 (902)
T KOG0219|consen 488 LDPKKQLKLENSAQFGWYFRVTRKEEKVLRKKKNYTELSTQKGGVKFTTKKLSSLNDEFMSLQKEYDEAQNEIVREIIKI 567 (902)
T ss_pred CCcccceeeeccchhheeeeeeehhhhHhhccCCceEEEEeeCcEEEEhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99889999999999 999999999999888 789999999999999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCCcceEEEEccccCeeEecCCceeeccccccccCCcee
Q psy5289 475 SAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSF 554 (813)
Q Consensus 475 ~~~~~~~l~~~~~~ia~LD~l~S~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~ 554 (813)
...|.|.|..++..+|.|||++|||++|..++.+|+||.+.+.+...+.++++|||++|.+....||||++.|..+++++
T Consensus 568 a~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~gs~rl~l~~~rHp~lE~Qd~~~fIpNdv~le~~~~~~ 647 (902)
T KOG0219|consen 568 AATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLGSKRLELKQSRHPVLEGQDEIPFIPNDVVLEKGKCRM 647 (902)
T ss_pred HhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccchhHHHHHhcccchhhccccCCCCCCccccccCCceE
Confidence 99999999999999999999999999999999999999999877668999999999999988889999999999999999
Q ss_pred EEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCCCCcE
Q psy5289 555 NLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSL 634 (813)
Q Consensus 555 ~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~~L 634 (813)
.+||||||+|||||+|++|.+++|||+|||||++.+.++++|.|++|+|+.|++.+|.||||.||.+.+.|++.++++||
T Consensus 648 ~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta~Ilr~at~~Sl 727 (902)
T KOG0219|consen 648 LIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQLKGISTFMAEMLETASILRRATKNSL 727 (902)
T ss_pred EEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhhcchHHHHHHHHHHHHHHHhcCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCeEEEEEEeccCCCCC
Q psy5289 635 VIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVK 714 (813)
Q Consensus 635 lllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i~~~y~l~~G~~~~ 714 (813)
||+|||||||+++||..++|++.+++..+.||.+|||||+||++.++...+.++|.||.+..++++++.+|++.+|+|++
T Consensus 728 iiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~lae~~~~vKn~h~~a~i~~~~~~llY~V~~Gv~d~ 807 (902)
T KOG0219|consen 728 IIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELTKLAEQLPTVKNLHVTAQIENDDITLLYKVFEGVCDQ 807 (902)
T ss_pred EEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhhhhhhhhhheeeeEecCcchhhHHHHhcccccC
Confidence 99999999999999999999999999987899999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHhhhcC
Q psy5289 715 SYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDT 747 (813)
Q Consensus 715 s~gi~vA~~ag~p~~vi~~A~~~~~~le~~~~~ 747 (813)
||||+||+++|||+.||+.|++++++||+....
T Consensus 808 SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~~ 840 (902)
T KOG0219|consen 808 SFGIHVAELVGFPEHVIEMAKQKAEELEDELVI 840 (902)
T ss_pred cchhhHHHHcCCChHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988653
No 5
>KOG0218|consensus
Probab=100.00 E-value=6.4e-105 Score=869.15 Aligned_cols=717 Identities=26% Similarity=0.385 Sum_probs=560.7
Q ss_pred ccc-ccCCCCCeEEEEecCCceeehhHHHHHHHHhcCccccccccCCC----CCCcceEEeccCChHHHHHHHHhcc---
Q psy5289 5 LFF-FPQKSKTTIRFFNRVEFYCVHGEDAELIQRKSNVVYLVKTMGQK----DKTLETVLVNKSNLSCFSHILCVIS--- 76 (813)
Q Consensus 5 ~~~-lk~k~~d~ilffr~GDFYe~f~eDA~~~a~~t~~~~~~~~~g~~----~~gvp~~~~~~~~~~~yi~~L~~~~--- 76 (813)
||- +|.+|+|+||..++|.-|.+|||||++|||..+. +|-.+ .|.+|-|.+ ...+++||..|
T Consensus 168 Q~~elK~~h~d~VL~ievGYkyRfFgeDAeiasrvLgI-----ych~dhnFmtaS~P~~Rl-----~vHleRLv~~g~KV 237 (1070)
T KOG0218|consen 168 QVKELKMHHRDKVLVIEVGYKYRFFGEDAEIASRVLGI-----YCHNDHNFMTASFPDVRL-----NVHLERLVHHGLKV 237 (1070)
T ss_pred HHHHHHhhCCceEEEEEecceEEeecccHHHHHHhhce-----EEEeccceeeccCCcchh-----hHHHHHHHhcCceE
Confidence 344 9999999999999999999999999999993332 22222 177888888 67788887774
Q ss_pred --------------------------------Cceeeecc---------c----------------------CCeEEEEE
Q psy5289 77 --------------------------------EDKTLETV---------L----------------------TNTVGVAI 93 (813)
Q Consensus 77 --------------------------------~~~~~e~~---------l----------------------~~~vGiA~ 93 (813)
+|. .||. + ...||+.-
T Consensus 238 aVVkQtETAAiKs~gasRsslF~RklsavyTKaTl-~eds~~~~r~e~~~~~~ssfllcv~dn~~ksk~ksg~v~vglig 316 (1070)
T KOG0218|consen 238 AVVKQTETAAIKSHGASRSSLFERKLSAVYTKATL-GEDSTFVLRGERILGDTSSFLLCVRDNVHKSKEKSGVVKVGLIG 316 (1070)
T ss_pred EEEeehhhHHHHhcCCcccchHHHHHHHHhhhhhh-ccccccccchhhhcCCcceEEEEEehhhhhhhhhcCceEEEEEE
Confidence 111 1221 1 23699999
Q ss_pred EECCCCeEEeeecCCchhHHHHHHHHHhcCCcEEEeCCCCCCcchhHHHHhhhcCCeeeeccCCCCCChhHH-HHHHH--
Q psy5289 94 VDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDL-MQDVN-- 170 (813)
Q Consensus 94 ~D~stge~~~~ef~D~~~~~~L~s~L~~~~P~Eili~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~~~~-~~~L~-- 170 (813)
+.++|||+.+.+|.|+...+.|++.|..++|.|+|++.+ .++.... .+.+.++.+.......|..+++ .+.+.
T Consensus 317 VqlstGevVydeFqdnf~rseLqtrisslqP~ElLl~~~-ls~qt~a---ll~~~~Vsve~~~~rv~r~~naV~q~ikla 392 (1070)
T KOG0218|consen 317 VQLSTGEVVYDEFQDNFARSELQTRISSLQPIELLLNTD-LSPQTVA---LLFKDNVSVELIHKRVYRLENAVVQAIKLA 392 (1070)
T ss_pred EecCCCcEehHhhhhhHHHHHHHHHHhccCcceeecCCC-CcHHHHH---HHHhcccchhhhhhhhhhchhHHHHHHHHH
Confidence 999999999999999999999999999999999999975 3333222 2222233322222223333321 11111
Q ss_pred --Hhhccccchhh-hcc----ccccccchhHHHHHHHHHHHHHHhcCCCCCCccee-EEeccCCeEeeCHHHHhhccccc
Q psy5289 171 --RLVRFDDSELK-NAR----LLPEMCLTTATHCLRSLINYLELMNNEDNMNQFSI-HSIDYSKYVHMSSAVMSSLHVLP 242 (813)
Q Consensus 171 --~l~~~~~~~~~-~~~----~l~~~~~~~a~~A~gaLL~YL~~~~~~~~~~~~~i-~~~~~~~~M~LD~~Tl~~LeI~~ 242 (813)
.+.++..+... +.+ ....+.++-.++.++++++||.+.+.+..+-.-++ ..++...+|.||++|+++||||.
T Consensus 393 ~e~~q~f~~~k~~l~gs~ii~li~nl~~psvic~la~~is~lkefnlE~~l~~psf~s~~ss~e~Mtls~ntLq~Leif~ 472 (1070)
T KOG0218|consen 393 NEKIQNFEDDKEMLEGSEIICLIMNLSHPSVICLLAKLISHLKEFNLEQVLLIPSFYSPFSSKEHMTLSPNTLQSLEIFT 472 (1070)
T ss_pred HHHHhhhhhhhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHhchHHheecccccCcccccceeeechhhhhceeeee
Confidence 11111111111 000 01122333344559999999998764322211011 12345568999999999999999
Q ss_pred ccCCCccccccchhhhhhcccCchhHHHHHHHhhCcCCCHHHHHHHHHHHHHHh---hCHHHHHHHHHHHhcCCCcHHHH
Q psy5289 243 QQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILV---NNTEARMNLHEYALRGLPDMQSL 319 (813)
Q Consensus 243 ~~~~~~~k~~~SLf~lLn~t~T~~G~RlLr~wL~~PL~d~~~I~~R~d~Ve~l~---~~~~lr~~l~~~~Lk~i~Dlerl 319 (813)
|.+|++ . +|||||+||||.|.+|.|+||.|+.+||+|.+.|++|+|+|+++. +|....+.+.. .|.+.||+.|-
T Consensus 473 nqtd~~-~-kGSLfwvldhT~TsfG~RmLr~WvtkPLvd~~~I~eRLDAVeeitshssnS~vf~si~~-~l~rlpDl~rg 549 (1070)
T KOG0218|consen 473 NQTDGS-E-KGSLFWVLDHTRTSFGLRMLREWVTKPLVDVHQIEERLDAVEEITSHSSNSIVFESINQ-MLNRLPDLLRG 549 (1070)
T ss_pred ecCCCC-c-ccceEEEeccchhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcccchHHHHHHHH-HHHhCcHhHhh
Confidence 998875 4 899999999999999999999999999999999999999999993 35568889987 99999999999
Q ss_pred HHHHhccCCCH-HHHHHHHHHH----hhHHHHHHHHHH-------------HHhh---------------HhHHhH----
Q psy5289 320 AMRIGRKKAGL-KDCYRVYEGV----SQLPKLISILES-------------LVQN---------------VEASNL---- 362 (813)
Q Consensus 320 l~rl~~~~~~~-~d~~~l~~~l----~~l~~l~~~l~~-------------~~~~---------------~~~~~l---- 362 (813)
+.|+..+++++ ++++.+..++ ..+..+...++. ++.. .|+..+
T Consensus 550 L~rIy~~tCtp~~eff~vlk~iy~a~s~fq~~~~~~~~~~~s~~~s~~qS~LLrrlisel~~p~~~s~~~hfL~mln~~a 629 (1070)
T KOG0218|consen 550 LNRIYYGTCTPRKEFFFVLKQIYSAVSHFQMHQSYLEHFKSSDGRSGKQSPLLRRLISELNEPLSTSQLPHFLTMLNVSA 629 (1070)
T ss_pred HHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhccHHHHHHHHHhcCccccccHHHHHHHhhHHH
Confidence 99999999988 6666544433 222222111110 0000 011111
Q ss_pred ------HHHHHhhhhhhhh----------HHHHHHHHHHHHHHHHHHHHhCcccccceeEeecCc-ceEEEEeccccccc
Q psy5289 363 ------NTILSSLQSLKMM----------DRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQ-GFAYRITMKLNNSI 425 (813)
Q Consensus 363 ------~~~~~~~~~~~~~----------~~l~~l~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~-gy~i~v~~~~~~~~ 425 (813)
.++..++.+|... .+...-+..++..++++++.+..+ ++.+..... .|+|||+.+..+++
T Consensus 630 a~~gnk~d~fkd~snfpl~~e~~di~~virE~~ms~~~~~~hLaeiRk~Lk~p---nlef~~vsgv~flIEvkns~~kki 706 (1070)
T KOG0218|consen 630 AMEGNKDDQFKDFSNFPLYDESEDIIKVIRESEMSRSQLKEHLAEIRKYLKRP---NLEFRQVSGVDFLIEVKNSQIKKI 706 (1070)
T ss_pred HhhCChHHhhhhhccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEecCeeEEEEecccccccC
Confidence 1122223333222 111122234556777777777653 444443344 69999998899999
Q ss_pred CcCceEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy5289 426 DDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCA 505 (813)
Q Consensus 426 ~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~S~A~~a~~~ 505 (813)
|.+|+.+..++...||+||++.++-.++...++.........+.+....+.+|...|..+...+|.+||+.|||..|..
T Consensus 707 P~dWiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~~~sFL~kiSehYtelrkat~~LatlDCi~SlA~~s~n- 785 (1070)
T KOG0218|consen 707 PDDWIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQYKSFLNKISEHYTELRKATLNLATLDCILSLAATSCN- 785 (1070)
T ss_pred CccceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 9999999999999999999999999999999888887778889999999999999999999999999999999999988
Q ss_pred CCCCCCCcccCCCcceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccc
Q psy5289 506 PKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFV 585 (813)
Q Consensus 506 ~~~~~rP~~~~~~~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~v 585 (813)
.+||||+|.+ +...|.|+++|||++|......|||||+.++.+.+++.+||||||+|||.|+||+|++.+|||+|+||
T Consensus 786 -~nYvRPtfvd-~~~eI~ikngRhPvIe~Ll~d~fVPNdi~ls~egerc~IITGPNMGGKSsyIrQvALitIMAQiGsfV 863 (1070)
T KOG0218|consen 786 -VNYVRPTFVD-GQQEIIIKNGRHPVIESLLVDYFVPNDIMLSPEGERCNIITGPNMGGKSSYIRQVALITIMAQIGSFV 863 (1070)
T ss_pred -CCccCccccc-chhhhhhhcCCCchHHHHhhhccCCCcceecCCCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCcc
Confidence 8999999997 34679999999999996655569999999999999999999999999999999999999999999999
Q ss_pred cCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q psy5289 586 PCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQ 665 (813)
Q Consensus 586 pa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~ 665 (813)
||+.+.++++|.+|+|||+.|++..|.||||.||..++.|++.|+++||+||||.||||++.||.+|++|.++|+.+..+
T Consensus 864 PAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDElGRGTsThDGiAIsYAtL~yf~~~~k 943 (1070)
T KOG0218|consen 864 PAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDELGRGTSTHDGIAISYATLKYFSELSK 943 (1070)
T ss_pred chHHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHhhcCCCccccchhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998779
Q ss_pred CEEEEEcCChHHHhhcCCCCc-eEeeEEEEEEE-------CCeEEEEEEeccCCCCCcHHHHHHHHCCCCHHHHHHHHHH
Q psy5289 666 PFTLFATHFHEIALLSRVIPT-FRNVQVSALEQ-------EDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDL 737 (813)
Q Consensus 666 ~~~l~~TH~~el~~~~~~~~~-v~~~~~~~~~~-------~~~i~~~y~l~~G~~~~s~gi~vA~~ag~p~~vi~~A~~~ 737 (813)
|.+||+||++.+.++...+|+ |.||||..... .+.++|+||+++|.|.+|||++||++|++|.+||.||-.+
T Consensus 944 ~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~~~d~dsVtfLYklvrGlasrSyGlnVAklA~ip~sii~rA~si 1023 (1070)
T KOG0218|consen 944 CLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKTGEDWDSVTFLYKLVRGLASRSYGLNVAKLARIPKSIINRAFSI 1023 (1070)
T ss_pred eeEEeeecCcchhhhhcCCCccccceeeeeeeeccccCCCchhhhhHHHHhhhhhhccccccHHHHhCCCHHHHHHHHHH
Confidence 999999999999999888765 89999988763 2569999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q psy5289 738 MKEYEYSL 745 (813)
Q Consensus 738 ~~~le~~~ 745 (813)
+++||...
T Consensus 1024 Seeleke~ 1031 (1070)
T KOG0218|consen 1024 SEELEKES 1031 (1070)
T ss_pred HHHHHHHH
Confidence 99998765
No 6
>KOG0217|consensus
Probab=100.00 E-value=3.4e-99 Score=857.40 Aligned_cols=730 Identities=26% Similarity=0.394 Sum_probs=572.5
Q ss_pred Cccccc-ccCCCCCeEEEEecCCceeehhHHHHHHHHhcCccccccccCCCC-CCcceEEeccCChHHHHHHHHhcc---
Q psy5289 2 KFYLFF-FPQKSKTTIRFFNRVEFYCVHGEDAELIQRKSNVVYLVKTMGQKD-KTLETVLVNKSNLSCFSHILCVIS--- 76 (813)
Q Consensus 2 ~f~~~~-lk~k~~d~ilffr~GDFYe~f~eDA~~~a~~t~~~~~~~~~g~~~-~gvp~~~~~~~~~~~yi~~L~~~~--- 76 (813)
|-.||| +|+++-|||+||.+|.|||+|..||.++++...- .. +.|..| +|+|-+++ +-|+..++++|
T Consensus 251 g~kqwWeiKs~~fD~ivfFk~GKFyELye~DA~vg~~~~dl--~f-~~vN~~~~GfPE~sf-----~~~a~q~iq~GYkv 322 (1125)
T KOG0217|consen 251 GEKQWWEIKSDNFDTIVFFKKGKFYELYEMDALVGARLFDL--KF-MDVNMPHSGFPEGSF-----DYWADQFIQKGYKV 322 (1125)
T ss_pred hhhhhhhhhhhcccEEEEEecchHHHHHhhhhhhhhhhcce--ee-cccccccCCCCccch-----hhHHHHHHhcccee
Confidence 447899 9999999999999999999999999999994332 11 123334 78888888 77888888885
Q ss_pred ------------------------------------Cceeeeccc---------------------CCeEEEEEEECCCC
Q psy5289 77 ------------------------------------EDKTLETVL---------------------TNTVGVAIVDLDTK 99 (813)
Q Consensus 77 ------------------------------------~~~~~e~~l---------------------~~~vGiA~~D~stg 99 (813)
||...++++ ...+|+|++|++||
T Consensus 323 arVEQtEt~l~~e~r~~~~~~kdkvvrRev~~ilt~GT~td~~l~~~~~akylmai~e~~~~~~~~~~s~gvc~iDtstg 402 (1125)
T KOG0217|consen 323 ARVEQTETPLGKEIRERKTGKKDKVVRREVCRILTNGTLTDIALLTSDLAKYLMAIKESEESYSTGEVSFGVCFIDTSTG 402 (1125)
T ss_pred eeeccccChHHhhhhhcccccchhhHHHHHHHHhcCCcchhHHHhccHHHHHHHHHhhcCCCCCcCceeeeEEEEEcccc
Confidence 111111111 24699999999999
Q ss_pred eEEeeecCCchhHHHHHHHHHhcCCcEEEeCCCCCCcchhHHHHhhhcCCeeeeccCCCCCChh-HHHHHH-H-Hhhccc
Q psy5289 100 KFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEE-DLMQDV-N-RLVRFD 176 (813)
Q Consensus 100 e~~~~ef~D~~~~~~L~s~L~~~~P~Eili~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~~-~~~~~L-~-~l~~~~ 176 (813)
+++++||+||...+.|.++|.++.|.|+|.+.+..+.......+..-.++......|.++|+.. .+...+ . +.+..
T Consensus 403 e~~~~eF~DDr~~s~L~tlLs~~rp~E~I~e~~~ls~~t~~~ik~~~~~~~~~n~~~~~eFwdsek~~~eii~~dy~~~- 481 (1125)
T KOG0217|consen 403 EINIGEFCDDRHCSKLDTLLSQVRPVELIEERKNLSDPTKVIIKLKLSSNLVENLVPKSEFWDSEKTGREIISEDYFES- 481 (1125)
T ss_pred eEEEEEeecchhhhHHHHHHHcccHHHHHHHhhccCCceeeeeeeeecchhhhcccChhhhcchhhHHHHHhhhhhhhc-
Confidence 9999999999999999999999999999987521111111111111112223344666677643 222211 1 11110
Q ss_pred cchhh--hccccccccchhHHHHHHHHHHHHHHhcCCCC---CCcceeEEeccCCeEeeCHHHHhhcccccccCCCcccc
Q psy5289 177 DSELK--NARLLPEMCLTTATHCLRSLINYLELMNNEDN---MNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQT 251 (813)
Q Consensus 177 ~~~~~--~~~~l~~~~~~~a~~A~gaLL~YL~~~~~~~~---~~~~~i~~~~~~~~M~LD~~Tl~~LeI~~~~~~~~~k~ 251 (813)
-|... +...-+..+.++++.|+|+++.||+....... ...+.........-|.||..|++|||||.|..+|+ .
T Consensus 482 ~g~e~~~sil~~p~~~~~la~safg~~~~Ylk~~~id~~llsm~n~~ey~~~~~s~mvlD~~tL~NleIf~Ns~~G~-~- 559 (1125)
T KOG0217|consen 482 LGLEDSPSILKSPNTDKELALSAFGGLFYYLKKLLIDEELLSMKNFEEYDSLDQSEMVLDGATLENLEIFSNSRNGG-D- 559 (1125)
T ss_pred ccccCchhhccCCCccchhhHHHHHHHHHHHHHHhhHHHHhhhhhhhhcchhcccceeecchhhhhhhhhccCCCCC-C-
Confidence 01000 01111233468999999999999996542111 11221111111233999999999999999998875 4
Q ss_pred ccchhhhhhcccCchhHHHHHHHhhCcCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCcHHHHHHHHhccCCC-H
Q psy5289 252 YDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAG-L 330 (813)
Q Consensus 252 ~~SLf~lLn~t~T~~G~RlLr~wL~~PL~d~~~I~~R~d~Ve~l~~~~~lr~~l~~~~Lk~i~Dlerll~rl~~~~~~-~ 330 (813)
+||||..+|+|.||+|+|||++||++||+|.+.|++||++|+.|..++..+..+.+ .|+++||+||++.|++.+... .
T Consensus 560 ~gtL~~~~~~csTpfGKRllk~Wl~~Pl~~~~~I~~R~dav~~l~~~~~~~~~~~e-~l~klPDlERlL~Rih~~~~~~~ 638 (1125)
T KOG0217|consen 560 EGTLFYAVNRCSTPFGKRLLKTWLMAPLCDKEDIKQRQDAVDSLGKAPMDRTKVGE-TLKKLPDLERLLVRIHNGGEKNK 638 (1125)
T ss_pred chhHHHHHhhccChHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHhcCchhHHHHHH-HHhhCCcHHHHHHHHHhcCccch
Confidence 79999999999999999999999999999999999999999999999999999997 999999999999999987655 3
Q ss_pred ---HHHHHHHHHHhhHHHHHHHHHHHHh--------hHhHHhHHHHHHhhhhhhhh------------------------
Q psy5289 331 ---KDCYRVYEGVSQLPKLISILESLVQ--------NVEASNLNTILSSLQSLKMM------------------------ 375 (813)
Q Consensus 331 ---~d~~~l~~~l~~l~~l~~~l~~~~~--------~~~~~~l~~~~~~~~~~~~~------------------------ 375 (813)
.|+++...+++.+..+...+.+.+. ..++..+.++...+..+.+.
T Consensus 639 k~i~~f~rvLegfk~~~~~~~~~~~v~~~~~~~~~is~~~~~~p~~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD~ 718 (1125)
T KOG0217|consen 639 KKIADFIRVLEGFKEINKLLGSLINVLKEGEGLRLISELLESMPNLSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYDE 718 (1125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcCccCCCccccHHHHH
Confidence 3555555555554444333322000 00000101111111111110
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhCcccccceeEeecCc-ceEEEEecccccccCcCceEeeeecceEEEeChhHHHHHHH
Q psy5289 376 --DRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQ-GFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQ 452 (813)
Q Consensus 376 --~~l~~l~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~-gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~ 452 (813)
..++++.+.+...++..+.+++. .+++...... -|.++|+.+-....+.+|+..++.++..||.|++++.+-..
T Consensus 719 a~k~~~e~e~~L~~~L~~~rk~l~c---~si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~tp~~~kli~~ 795 (1125)
T KOG0217|consen 719 AMKRVDEAENELLAYLEEYRKRLGC---SSIVFVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYYTPDLRKLIAH 795 (1125)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcCC---CceeEeecCceEEEEecCcccCCCCchHHHHHHhhcCcccccCHHHHHHHHH
Confidence 44555666777778888888876 3444444444 69999987665555566999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCCc--ceEEEEccccC
Q psy5289 453 YQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGT--GSLVLNQCRHP 530 (813)
Q Consensus 453 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~S~A~~a~~~~~~~~rP~~~~~~~--~~l~i~~~rhp 530 (813)
+.++++........+.+++...+.++...|+.+..++|.||||+|+|.+|...+.++|||++.++.+ +.+.++..+||
T Consensus 796 l~~aee~~~~~~~d~~~r~~~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~dt~~~l~~~~~~Hp 875 (1125)
T KOG0217|consen 796 LDEAEERKKSSLSDLKRRLIVRFDEHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVESTDTPGFLIVKGLRHP 875 (1125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecccCCCceeEEecccCc
Confidence 9999999988888999999999999999999999999999999999999998888999999976432 35899999999
Q ss_pred eeEecC-Cceeeccccccc-cCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhH
Q psy5289 531 IVELQG-GVSYIPNDVYFK-SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQ 608 (813)
Q Consensus 531 ~~e~~~-~~~~i~n~v~l~-~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~ 608 (813)
++.... +..||||++.+. ..+..+.++|||||+||||+||+++..++|||+||+|||..+.++++|+|++|+|+.|++
T Consensus 876 cfsl~s~~~~fipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~i 955 (1125)
T KOG0217|consen 876 CFSLPSTGTSFIPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDI 955 (1125)
T ss_pred eeecCcCCCccccchhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccch
Confidence 998653 347999999998 455566679999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceE
Q psy5289 609 YRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFR 688 (813)
Q Consensus 609 ~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~ 688 (813)
..|.|||+.|+.+++.|+..+++.|||++||.||||++.||.+||.++++++....+|..+|+||+|.++.-..+.|.|+
T Consensus 956 m~g~STF~vELsET~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~~~~~~~p~Vr 1035 (1125)
T KOG0217|consen 956 MSGESTFFVELSETKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLCVDFMHHPQVR 1035 (1125)
T ss_pred hcCCceEEEeccchHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccchhHhhhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999878999999999999998888899999
Q ss_pred eeEEEEEEECCe-EEEEEEeccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHhhhc
Q psy5289 689 NVQVSALEQEDN-LVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLD 746 (813)
Q Consensus 689 ~~~~~~~~~~~~-i~~~y~l~~G~~~~s~gi~vA~~ag~p~~vi~~A~~~~~~le~~~~ 746 (813)
.+||....+.+. ++|+||+.+|+|++|||++||++||+|..||++|...+.+++....
T Consensus 1036 l~~Ma~~vd~e~~vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e~~~~ 1094 (1125)
T KOG0217|consen 1036 LLHMACVVDEEIDVTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHELEKSSA 1094 (1125)
T ss_pred chhheeeecCCccEEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999988766 9999999999999999999999999999999999999999997763
No 7
>KOG0220|consensus
Probab=100.00 E-value=8.7e-79 Score=667.83 Aligned_cols=690 Identities=23% Similarity=0.388 Sum_probs=546.5
Q ss_pred CCeEEEEEEECCCCeEEeeecCCchhHHHHHHHHHhcCCcEEEeCCCCCCcchhHH-HHhh--hcCCeeeeccCCCCCCh
Q psy5289 86 TNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKI-VTIL--DRNKVCMTGRKKNEFSE 162 (813)
Q Consensus 86 ~~~vGiA~~D~stge~~~~ef~D~~~~~~L~s~L~~~~P~Eili~~~~~~~~~~~l-~~~l--~~~~~~i~~~~~~~F~~ 162 (813)
.+.||+|.+|.-++++++++|.|+..|..+.+.+.-++|-||++++........++ -.+. +..++.++...+.+|++
T Consensus 117 ~~~Ig~~~~~~~~~q~~l~~f~dst~y~~v~~~l~i~s~~ei~i~~~~~a~~~skl~~~~~~e~~~~v~~~~~s~k~fns 196 (867)
T KOG0220|consen 117 RGEIGMASIDLKNPQIILSQFADSTTYAKVITKLKILSPLEIIISNTACAVGNSKLLFTLITENFKNVNFTTISRKYFNS 196 (867)
T ss_pred cceeEEEEecCCCCceehhhhhccchhHHHHhHhhccChhheeecccccccchHHHHHHHHhhcccccceeehhhhhcCc
Confidence 57899999999999999999999999999999999999999999963111222222 2222 23355677777889998
Q ss_pred hHHHHHHHHhhccccchhhhccccccccchhHHHHHHHHHHHHHHhcCCCC-CCcceeEEeccCCeEeeCHHHHhhcccc
Q psy5289 163 EDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELMNNEDN-MNQFSIHSIDYSKYVHMSSAVMSSLHVL 241 (813)
Q Consensus 163 ~~~~~~L~~l~~~~~~~~~~~~~l~~~~~~~a~~A~gaLL~YL~~~~~~~~-~~~~~i~~~~~~~~M~LD~~Tl~~LeI~ 241 (813)
+++.+.+..++.- ++ +...-...+...+++|+|++++|+++.+..-+ ...+++......+.|.||..+..+|||+
T Consensus 197 ~~gl~~i~~~~~~-~~---s~vle~i~~k~~al~a~a~llky~~~~~~~~~~~~slri~~~gs~nT~~id~~~~~~lelV 272 (867)
T KOG0220|consen 197 TKGLEYIEQLCIA-EF---STVLEEIQSKTYALGAAAALLKYVEEIQSSVYAPKSLRICFQGSENTAMIDSSSAQSLELV 272 (867)
T ss_pred hhhHHHHHHHHhh-hh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeecccceeeeecccccceEEe
Confidence 8888888877641 11 11111123568899999999999998874221 2345778888999999999999999999
Q ss_pred cccCCCccccccchhhhhhcccCchhHHHHHHHhhCcCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCcHHHHHH
Q psy5289 242 PQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAM 321 (813)
Q Consensus 242 ~~~~~~~~k~~~SLf~lLn~t~T~~G~RlLr~wL~~PL~d~~~I~~R~d~Ve~l~~~~~lr~~l~~~~Lk~i~Dlerll~ 321 (813)
++..-. + +.+|++++|+|.|++|.|.||..+.||++|...|+.|++++++|..++++...++. .+++.+|++++++
T Consensus 273 ~~~~~k--n-~~~l~~vl~~T~t~~g~r~lRssilqpl~d~~ti~~rleaiqeL~a~~~L~~~Lr~-~~k~~~dld~~~s 348 (867)
T KOG0220|consen 273 INNQYK--N-NHTLFGVLNYTKTPGGYRRLRSSILQPLTDIETINMRLEAIQELLADEELFFGLRS-VIKRFLDLDQLLS 348 (867)
T ss_pred chhhhh--c-ccceeeeeeeeecccchhhHHhhhcccccchhhhhHHHHHHHHHhcCchHhhhhHH-HHhhhhhHHHHHH
Confidence 886522 3 67999999999999999999999999999999999999999999999999999997 9999999999998
Q ss_pred HHhccC---------CCHHHHHHHHHHHhhHHHHHHHHHH-----------HHh-hH---hHHhHHHHHHh-hh------
Q psy5289 322 RIGRKK---------AGLKDCYRVYEGVSQLPKLISILES-----------LVQ-NV---EASNLNTILSS-LQ------ 370 (813)
Q Consensus 322 rl~~~~---------~~~~d~~~l~~~l~~l~~l~~~l~~-----------~~~-~~---~~~~l~~~~~~-~~------ 370 (813)
++.... ........+..++..+..++..+.+ .+. .. +..++.+.+.+ +-
T Consensus 349 ~~~~~~~~~~i~~~~s~I~~~~~Lk~tL~lv~~~~~al~~~~s~~~~e~~~~~~~~r~~~i~~~i~e~I~dd~l~a~~~l 428 (867)
T KOG0220|consen 349 VLVQIPTQDTVNAAESKINNLIYLKHTLELVDPLKIALKNCNSNLLREYYGSFKDKRFGIILEKIKEVINDDALYAKGCL 428 (867)
T ss_pred HHHhhhhHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHhccchh
Confidence 764321 1122233444444444444433332 000 00 11222222211 10
Q ss_pred ---------------hhhhh--HHHHHHHHHHHHHHHHHHHHhCcccccceeEeecCc-ceEEEEeccc----ccccCcC
Q psy5289 371 ---------------SLKMM--DRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQ-GFAYRITMKL----NNSIDDR 428 (813)
Q Consensus 371 ---------------~~~~~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~-gy~i~v~~~~----~~~~~~~ 428 (813)
.+.++ ....++.++......++.+... .++++.++.. ||+++++... ...+|..
T Consensus 429 ~~~~qkcyAvks~i~~~LDiaR~ty~ei~~~~~~~i~~l~E~~~----~nl~~~f~sarGF~~ri~~~~~~~~~~~lP~~ 504 (867)
T KOG0220|consen 429 NLRTQKCYAVKSNINGFLDIARRTYTEIVDDIAGMISQLGEKFS----LNLRLSFSSARGFFIRITTDCIALPSDTLPSE 504 (867)
T ss_pred hhhccceeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----ccccccccccccEEEEeeccccccccccCchh
Confidence 00000 1122222333334445555553 3678888888 9999998762 3467788
Q ss_pred ceEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy5289 429 YTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKP 508 (813)
Q Consensus 429 ~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~S~A~~a~~~~~~ 508 (813)
|+.+...++.++|+|..+..+|.++.+...++.-....++.++.+.+..+++.+..++++++-||+++|||+.... .+
T Consensus 505 fi~~~~~~~~~~~~s~~~ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~--~~ 582 (867)
T KOG0220|consen 505 FIKISKVKNSYSFTSADLIKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTL--SD 582 (867)
T ss_pred hhhhhhhcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcc--cc
Confidence 9999999999999999999999999999999988889999999999999999999999999999999999999988 68
Q ss_pred CCCCcccCCCcceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCC
Q psy5289 509 YVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCD 588 (813)
Q Consensus 509 ~~rP~~~~~~~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~ 588 (813)
|++|++++ .+.|++||||++|......+|.|+..++.+ .++.+|||||||||||||||+|++++|||+||||||.
T Consensus 583 y~~P~fT~----slaI~qGRHPILe~i~~ek~i~N~t~~t~~-s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IPA~ 657 (867)
T KOG0220|consen 583 YVRPEFTD----SLAIKQGRHPILEKISAEKPIANNTYVTEG-SNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVPAE 657 (867)
T ss_pred ccccccCC----ceeeccCCCchhhhhcccCcccCcceeecc-cceEEEECCCCCcchHHHHHHHHHHHHHHhccCcchh
Confidence 99999985 399999999999987766789999988855 5899999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEE
Q psy5289 589 SATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFT 668 (813)
Q Consensus 589 ~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~ 668 (813)
.+.++++++||+|||..|++....|+||.||++.+.|+..+++++||+|||.||||++.||.++.|++.|++.+ ..+.+
T Consensus 658 YaS~pIf~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TSteeGiaityAvCE~lL~-LkayT 736 (867)
T KOG0220|consen 658 YASFRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEEGIAITYAVCEYLLS-LKAYT 736 (867)
T ss_pred hccchHHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCccccchhhHHHHHHHHHH-hhHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 68999
Q ss_pred EEEcCChHHHhhcCCCCceEeeEEEEEEECCeEEE-EEEeccCCC-CCcHHHHHHHHCCCCHHHHHHHHHHHHHHHhhhc
Q psy5289 669 LFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVL-LYQVKPGSC-VKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLD 746 (813)
Q Consensus 669 l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i~~-~y~l~~G~~-~~s~gi~vA~~ag~p~~vi~~A~~~~~~le~~~~ 746 (813)
+++||+.+++.++...|.|.|+|+.+..+++...+ .|+|..|.. ..-||+++|++.-+|++|++.|+.++-++.....
T Consensus 737 flATHFldIa~lan~~paVdnlHF~~q~~eNssk~~k~kLsrg~~~~~~yG~~~vE~s~iPd~i~e~a~~~~t~i~A~v~ 816 (867)
T KOG0220|consen 737 FLATHFLDIAAIANYYPAVDNLHFLVQTDENSSKNKKYKLSRGLTEEKNYGLKAAEVSSLPDSIVEDAKEITTQITAQIL 816 (867)
T ss_pred HHHHHHHHHHHHhhcCccccceeeeeeecccchhhhhhhhhhhhhhcccccceEEEEecCCHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999988777665 799999975 5679999999999999999999999999887765
Q ss_pred CCCCCCCCccchhhhhHhhHHHHHHHHHHHHHHHhcc-ccccchhHHHHHHhhhhhhhhhhh
Q psy5289 747 TKTPSGDETNNREEEYFKTVQEGEYQMFDFLQQCLSL-SKQKDTNRILHLQETQEPGIEEYQ 807 (813)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 807 (813)
..+..- .++ +.+..+......+.+. .++++...+..+.+|.+-|++++.
T Consensus 817 ~~~rd~-----~~~-------~rq~~Vy~~a~~~~~t~gn~~e~~~~~klk~l~k~~ve~~~ 866 (867)
T KOG0220|consen 817 QNQRDT-----PEM-------ERQRAVYHLATRLVQTAGNSDEDSLRIKLKNLKKKYKEDFP 866 (867)
T ss_pred hhccCc-----hHH-------HHHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHhhcc
Confidence 333211 111 1111111122333333 233566668889999999999863
No 8
>KOG0221|consensus
Probab=100.00 E-value=2e-77 Score=645.46 Aligned_cols=581 Identities=24% Similarity=0.413 Sum_probs=481.9
Q ss_pred chhHHHHHHHHHHHHHHhcCC-----CCC--CcceeEEeccCCeEeeCHHHHhhcccccccCC-----Cccccccchhhh
Q psy5289 191 LTTATHCLRSLINYLELMNNE-----DNM--NQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGS-----TSAQTYDSLLGI 258 (813)
Q Consensus 191 ~~~a~~A~gaLL~YL~~~~~~-----~~~--~~~~i~~~~~~~~M~LD~~Tl~~LeI~~~~~~-----~~~k~~~SLf~l 258 (813)
-..++.++|+++.++...... .++ ....++.+.+.+.|.||.+|+.+|+|||+.+. ...++..|||++
T Consensus 193 i~~~~r~~g~ll~fl~~~rigv~l~~~~v~~pI~gik~f~l~~lv~iD~nTisaL~Ifp~e~~~~~~k~~~~~g~Slf~l 272 (849)
T KOG0221|consen 193 IEAVVRALGGLLKFLGRRRIGVELEDYNVSVPILGIKKFMLTHLVNIDQNTISALQIFPSESHPSKVKSGLKEGLSLFGL 272 (849)
T ss_pred hHHHHHhhhhHHhhcccceeeeeeccccccccccceeEEeecceeeeccchHHHHHhcccccccchhhhhhhcchhHHHH
Confidence 466789999999999865421 111 22467899999999999999999999987543 111215599999
Q ss_pred hhcccCchhHHHHHHHhhCcCCCHHHHHHHHHHHHHHhh--CHHHHHHHHHHHhcCCCcHHHHHHHHhccCCCHHHHHHH
Q psy5289 259 LDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVN--NTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRV 336 (813)
Q Consensus 259 Ln~t~T~~G~RlLr~wL~~PL~d~~~I~~R~d~Ve~l~~--~~~lr~~l~~~~Lk~i~Dlerll~rl~~~~~~~~d~~~l 336 (813)
+|+|.+.-|+|+||.|+.+|++|..+|..|+++|.+|.. |.++.+.|.. .|+++||+.-+++|++.|..++.+|-.+
T Consensus 273 ~n~c~s~~g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~~~~~Ls~-~lgr~k~~~~~~~~~~sg~t~l~~W~~~ 351 (849)
T KOG0221|consen 273 LNRCHSKWGEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQMLSR-LLGRIKNVPLILKRMKSGHTKLSDWQVL 351 (849)
T ss_pred HHHHhhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhHHHHHHHH-HHhhcccHHHHHHHHhcCCceechHHHH
Confidence 999999999999999999999999999999999999985 6788999987 9999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHH---------HHhhHhHHhHHHHHHhhhhhhhh----------------HHHHHHHHH---HHHH
Q psy5289 337 YEGVSQLPKLISILES---------LVQNVEASNLNTILSSLQSLKMM----------------DRKDAVMDK---MKEY 388 (813)
Q Consensus 337 ~~~l~~l~~l~~~l~~---------~~~~~~~~~l~~~~~~~~~~~~~----------------~~l~~l~~~---~~~~ 388 (813)
+.++...-.+.++... .+...+.+.+.++..-+.+..+. +++||.++. +...
T Consensus 352 ~stv~~~~~i~~~~rslp~s~~~~~~~~~~~~~~l~eia~~~g~vIdF~~S~~~~r~Tv~~giD~elDE~r~~y~~lp~~ 431 (849)
T KOG0221|consen 352 YSTVYSALGIRDACRSLPQSIQLFRDIAQEFSDDLHEIASLIGKVIDFEGSLAENRFTVLPGIDPELDEKRRRYMGLPSF 431 (849)
T ss_pred HHHHHHHHHHHHHHHhCccchhhhhHHHHHHHHHHHHHHHHhhheeccccccccceEEecCCCChHHHHHHHHHccchHH
Confidence 9988877666666554 12344555555555433333332 778887664 5667
Q ss_pred HHHHHHH----hCcccccceeEeecCc-ceEEEEecccccccC----cCceEeeeecceEEEeChhHHHHHHHHHHHHHH
Q psy5289 389 LESTARR----LNLVADKTIKLENSPQ-GFAYRITMKLNNSID----DRYTILDTVRGGVRFQDDRLATANTQYQAIQRE 459 (813)
Q Consensus 389 ~~~~~~~----~~~~~~~~lk~~~~~~-gy~i~v~~~~~~~~~----~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~ 459 (813)
+.+++++ ++..+ .++.+.|.|. ||++.|++.-..... ..|..+..+....+|.+...++|++.++++..+
T Consensus 432 Lt~vAr~e~~~L~~~~-psv~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~s~E~l~~rnart~eLD~~~GDIy~~ 510 (849)
T KOG0221|consen 432 LTEVARKELENLDSRI-PSVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFLSEEKLHYRNARTKELDALLGDIYCE 510 (849)
T ss_pred HHHHHHHHHHhhCCCC-CceeEEEeeceeeEEecccccchhhcCCcccchHHHhcccceeEeecccHHhHHHHhhhHHHh
Confidence 7777755 33322 4588999999 999999875433222 347888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCCcceEEEEccccCeeEecCCce
Q psy5289 460 YETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVS 539 (813)
Q Consensus 460 ~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~S~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~e~~~~~~ 539 (813)
+.+.|..|+-.|...+......|.++....++||+|+|||.+|.+ ++|.||.++++ .-.+.|.+||||++|... .+
T Consensus 511 i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~--~gy~~P~lv~e-~~il~I~ngrh~l~e~~~-dt 586 (849)
T KOG0221|consen 511 IRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAAD--YGYSRPRLVPE-VLILRIQNGRHPLMELCA-DT 586 (849)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCccccH-HHHHHHHcCChhHHHHHH-Hh
Confidence 999999999999999999999999999999999999999999988 99999999973 345889999999998764 38
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHH
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEM 619 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~ 619 (813)
||||++..+.++|++.+|||||.||||.||||+|++++|||+||||||+.|+++++|+|++||+..+++..+.||||.+.
T Consensus 587 fvPNst~iggdkgri~vITGpNasGKSiYlkqvglivfLahIGsFVPAe~A~IGivDrI~tri~s~esv~~gqSTFmiD~ 666 (849)
T KOG0221|consen 587 FVPNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVPAEEAEIGIVDRIFTRIHSCESVSLGQSTFMIDL 666 (849)
T ss_pred cCCCceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhhccccchhhhhcchHHHHHHHhhhhhhhhhhhhHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcC-C-CEEEEEcCChHHHhhc--CCCCceEeeEEEEE
Q psy5289 620 KETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHR-Q-PFTLFATHFHEIALLS--RVIPTFRNVQVSAL 695 (813)
Q Consensus 620 ~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~-~-~~~l~~TH~~el~~~~--~~~~~v~~~~~~~~ 695 (813)
.|++.+++.||..||+|+||.|+||++.||.++..+++.++.... . ++++++||+|++.+.. ...+.++.+.|.+.
T Consensus 667 ~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~~rg~~~PrifvcThfheL~ne~~L~~n~i~qfltm~vl 746 (849)
T KOG0221|consen 667 NQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLARGPTCPRIFVCTHFHELVNEQLLPQNPIVQFLTMEVL 746 (849)
T ss_pred HHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHHhcCCCCCeEEEeccHHHhhhhccCCcchhhhhhhHHHH
Confidence 999999999999999999999999999999999999999988732 2 4688899999998743 33445666666554
Q ss_pred E-ECCeEEEEEEeccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhhhHhhHHHHHHHHH
Q psy5289 696 E-QEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETNNREEEYFKTVQEGEYQMF 774 (813)
Q Consensus 696 ~-~~~~i~~~y~l~~G~~~~s~gi~vA~~ag~p~~vi~~A~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (813)
. +.++|+|+|++.+|.++.|||+++|+.+|+|++||.||++++..++......... ....+ .+-++...++.
T Consensus 747 r~~ge~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~~v~~ai~sg~~vk~~k--~~l~~-----~q~~~~q~~Vd 819 (849)
T KOG0221|consen 747 REDGEDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKEVSDAIRSGKPVKPVK--DLLKK-----NQMENCQTLVD 819 (849)
T ss_pred HhccCCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHHHHHHHHHcCCCchhhh--hhhhh-----hHHHHHHHHHH
Confidence 4 6789999999999999999999999999999999999999998887644322211 11111 23346677778
Q ss_pred HHHHHHhccc
Q psy5289 775 DFLQQCLSLS 784 (813)
Q Consensus 775 ~~l~~~~~~~ 784 (813)
+|+..-...+
T Consensus 820 kf~~lDl~lp 829 (849)
T KOG0221|consen 820 KFMKLDLELP 829 (849)
T ss_pred HHHHhcccCC
Confidence 7776444333
No 9
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=2.5e-65 Score=609.27 Aligned_cols=465 Identities=20% Similarity=0.327 Sum_probs=389.2
Q ss_pred hhhcccCchhHHHHHHHhhCcCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCcHHHHHHHHhccC-CCHHHHHHH
Q psy5289 258 ILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKK-AGLKDCYRV 336 (813)
Q Consensus 258 lLn~t~T~~G~RlLr~wL~~PL~d~~~I~~R~d~Ve~l~~~~~lr~~l~~~~Lk~i~Dlerll~rl~~~~-~~~~d~~~l 336 (813)
+-++|.|++|+|+|++| +|+.|.++|++||+.|+++.. .+...... .+++++|+++++.|+..+. .++.|+..+
T Consensus 18 l~~~~~t~~Gk~~l~~l--~P~~~~~~i~~~l~~~~e~~~--~~~~~~~~-~l~~~~Di~~~l~r~~~g~~l~~~eL~~i 92 (782)
T PRK00409 18 LKTFAASELGKEKVLQL--DPETDFEEVEELLEETDEAAK--LLRLKGLP-PFEGVKDIDDALKRAEKGGVLSGDELLEI 92 (782)
T ss_pred HHhHcCCHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH--HHHhcCCC-CCCCCccHHHHHHHHhCCCCCCHHHHHHH
Confidence 34789999999999994 999999999999999999873 23333343 6899999999999999754 889999999
Q ss_pred HHHHhhHHHHHHHHHHHHhhHhHHhHHHHHHhh----------hhhhh----h-----HHHHHHHHHHHHHHHHHHHHh-
Q psy5289 337 YEGVSQLPKLISILESLVQNVEASNLNTILSSL----------QSLKM----M-----DRKDAVMDKMKEYLESTARRL- 396 (813)
Q Consensus 337 ~~~l~~l~~l~~~l~~~~~~~~~~~l~~~~~~~----------~~~~~----~-----~~l~~l~~~~~~~~~~~~~~~- 396 (813)
..++..+..+...+...-.......+..+...+ ....+ + ++|++++..+.....++.+.+
T Consensus 93 ~~~l~~~~~l~~~l~~~~~~~~~~~L~~~~~~l~~~~~l~~~i~~~id~~g~i~d~aS~eL~~iR~~~~~~~~~i~~~l~ 172 (782)
T PRK00409 93 AKTLRYFRQLKRFIEDLEEEEELPILEEWVAKIRTLPELEQEIHNCIDEEGEVKDSASEKLRGIRRQLRRKKSRIREKLE 172 (782)
T ss_pred HHHHHHHHHHHHHHHhcccccchhHHHHHHHcCcCcHHHHHHHHHHhCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888877765310000111222222211 11111 1 778888877766555444332
Q ss_pred ------Ccccccce--eEeecCc-ceEEEEecccccccCcCceEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHH
Q psy5289 397 ------NLVADKTI--KLENSPQ-GFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSI 467 (813)
Q Consensus 397 ------~~~~~~~l--k~~~~~~-gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i 467 (813)
+. .+.+ ++..... +|++.|+......+|..|+..+.+....|+.|..+.++++++.++..++.+.+..|
T Consensus 173 ~~~~~~~~--~~~L~d~~it~r~~r~~i~vk~~~~~~~~g~v~~~s~sg~t~y~ep~~~~~ln~~l~~l~~~~~~~~~~i 250 (782)
T PRK00409 173 SIIRSKSL--QKYLQDTIITIRNDRYVLPVKAEYKHAIKGIVHDQSSSGATLYIEPQSVVELNNEIRELRNKEEQEIERI 250 (782)
T ss_pred HHHHhccc--ccccccceEEEECCEEEEEechhhhccCCCceeeEECCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1223 3445556 89999988777777755555555555566667779999999999999999999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCCcceEEEEccccCeeEecCCceeecccccc
Q psy5289 468 VEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYF 547 (813)
Q Consensus 468 ~~~l~~~~~~~~~~l~~~~~~ia~LD~l~S~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~e~~~~~~~i~n~v~l 547 (813)
+.+|...+.++.+.|..+.+++++||+++|+|.+|.. ++||+|.+++ ++.+.++++|||+++. ..+||||+.+
T Consensus 251 l~~l~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~--~~~~~P~~~~--~~~i~l~~~rHPll~~---~~~Vpndi~l 323 (782)
T PRK00409 251 LKELSAKVAKNLDFLKFLNKIFDELDFIFARARYAKA--LKATFPLFND--EGKIDLRQARHPLLDG---EKVVPKDISL 323 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCccceEcC--CCcEEEcCcCCceecc---CceECceeEE
Confidence 9999999999999999999999999999999999998 8899999985 4679999999999963 4699999999
Q ss_pred ccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCc-cchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHH
Q psy5289 548 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS-ATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI 626 (813)
Q Consensus 548 ~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~-~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il 626 (813)
+. .+++++|||||||||||+||++|++++|||+|+||||.. +.++++|+||+++|..|++..+.|+||++|++++.++
T Consensus 324 ~~-~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il 402 (782)
T PRK00409 324 GF-DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRIL 402 (782)
T ss_pred CC-CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHH
Confidence 84 468999999999999999999999999999999999996 6899999999999999999999999999999999999
Q ss_pred HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCeEEEEEE
Q psy5289 627 KKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQ 706 (813)
Q Consensus 627 ~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i~~~y~ 706 (813)
+.+++|+|+||||||+|||+.++.+++.++++++.+ .|+++|++||++++..++...+.+.|++|.+ +.+.+.|+|+
T Consensus 403 ~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~el~~~~~~~~~v~~~~~~~--d~~~l~~~Yk 479 (782)
T PRK00409 403 EKADKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKELKALMYNREGVENASVEF--DEETLRPTYR 479 (782)
T ss_pred HhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHHHHHHHhcCCCeEEEEEEE--ecCcCcEEEE
Confidence 999999999999999999999999999999999987 6899999999999999888888999998875 5678999999
Q ss_pred eccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHH
Q psy5289 707 VKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKE 740 (813)
Q Consensus 707 l~~G~~~~s~gi~vA~~ag~p~~vi~~A~~~~~~ 740 (813)
+.+|.+++|||++||+++|+|++||++|++++.+
T Consensus 480 l~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~ 513 (782)
T PRK00409 480 LLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGE 513 (782)
T ss_pred EeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999764
No 10
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=4.3e-59 Score=554.26 Aligned_cols=466 Identities=22% Similarity=0.303 Sum_probs=381.0
Q ss_pred hhhhcccCchhHHHHHHHhhCcCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCcHHHHHHHHhccC-CCHHH-HH
Q psy5289 257 GILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKK-AGLKD-CY 334 (813)
Q Consensus 257 ~lLn~t~T~~G~RlLr~wL~~PL~d~~~I~~R~d~Ve~l~~~~~lr~~l~~~~Lk~i~Dlerll~rl~~~~-~~~~d-~~ 334 (813)
.+.++|.|++|++++++ +.|+.|.++|++|++.++++..... . ..+..++|+.+++.|+..+. .++.+ +.
T Consensus 17 ~l~~~~~t~~gk~~~~~--l~P~~~~~~i~~~l~~~~e~~~~~~-----~-~~l~~~~di~~~l~r~~~g~~l~~~e~l~ 88 (771)
T TIGR01069 17 NLLKQTFTPLGKEDAIG--LKPPKSVEESKEIIIKLTALGSIEN-----N-VRFFGFEDIRELLKRAELGGIVKGLEYIL 88 (771)
T ss_pred HHHHHcCCHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHhhc-----c-CCcCCCccHHHHHHHHhcCCcCChHHHHH
Confidence 45688999999999999 6999999999999999999976332 3 26999999999999999865 67766 99
Q ss_pred HHHHHHhhHHHHHHHHHHH-----HhhH------hHHhHHHHHHhhhhhhhh-----HHHHHHHHHHHHHHHHHHHHhCc
Q psy5289 335 RVYEGVSQLPKLISILESL-----VQNV------EASNLNTILSSLQSLKMM-----DRKDAVMDKMKEYLESTARRLNL 398 (813)
Q Consensus 335 ~l~~~l~~l~~l~~~l~~~-----~~~~------~~~~l~~~~~~~~~~~~~-----~~l~~l~~~~~~~~~~~~~~~~~ 398 (813)
.+..++.....+...+... +... +......+...++.-.++ ++|++++..+.....++.+.+.-
T Consensus 89 ~i~~~l~~~~~l~~~l~~~~~~~~L~~~~~~l~~~~~l~~~i~~~id~~g~i~d~aS~~L~~ir~~~~~~~~~i~~~l~~ 168 (771)
T TIGR01069 89 VIQNALKTVKHLKVLSEHVLDLEILFHLRLNLITLPPLENDIIACIDDDGKVKDGASEELDAIRESLKALEEEVVKRLHK 168 (771)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHhcCCCcHHHHHHHHHHhCCCCEECCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877777666420 0000 000011111111111111 67777777766555544433210
Q ss_pred -----ccccce--eEeecCc-ceEEEEecccccccCcCceEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5289 399 -----VADKTI--KLENSPQ-GFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEE 470 (813)
Q Consensus 399 -----~~~~~l--k~~~~~~-gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~ 470 (813)
...+.+ .+..... +|++.|+......+|..++..+.+....|+.|..+.++|+++.++..+..+.+..|+.+
T Consensus 169 ~~~~~~~~~~l~~~~it~r~~r~vipvk~~~~~~i~g~v~~~S~sg~t~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~ 248 (771)
T TIGR01069 169 IIRSKELAKYLSDTIVTIRNGRYVLPLKSGFKGKIKGIVHDTSSSGETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRT 248 (771)
T ss_pred HHHhhchhhhhcCceEEEECCEEEEEeeHHHhhcCCCeEEEEeCCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111 1222233 69999987766777754554444444455556679999999999999999999999999
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCCcceEEEEccccCeeEecCCceeeccccccccC
Q psy5289 471 VIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSG 550 (813)
Q Consensus 471 l~~~~~~~~~~l~~~~~~ia~LD~l~S~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~ 550 (813)
|...+.++.+.|..+.+++++||+++|+|.+|.. .+||+|.+.+ .+.+.++++|||+++ ...+||||+.+..+
T Consensus 249 L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~--~~~~~P~~~~--~~~i~l~~~rhPll~---~~~~vp~di~l~~~ 321 (771)
T TIGR01069 249 LSEKVQEYLLELKFLFKEFDFLDSLQARARYAKA--VKGEFPMPSF--TGKIILENARHPLLK---EPKVVPFTLNLKFE 321 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCeeceecC--CCCEEEccccCceec---CCceEeceeEeCCC
Confidence 9999999999999999999999999999999998 8899999876 357999999999996 23599999999743
Q ss_pred CceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCc-cchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhC
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS-ATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC 629 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~-~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~ 629 (813)
.++++||||||||||||||+++++++|+|.|++||+.. ..++++++++++++..+++..+.|+|+.+|.+++.++..+
T Consensus 322 -~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~ 400 (771)
T TIGR01069 322 -KRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKT 400 (771)
T ss_pred -ceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhc
Confidence 47999999999999999999999999999999999987 5899999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCeEEEEEEecc
Q psy5289 630 TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKP 709 (813)
Q Consensus 630 ~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i~~~y~l~~ 709 (813)
++++|||+||||+|||+.++.++++++++++.+ .|+++|++||++++..++...+++.|++|.+ +.+++.|+|++.+
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~eL~~~~~~~~~v~~~~~~~--d~~~l~p~Ykl~~ 477 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKELKALMYNNEGVENASVLF--DEETLSPTYKLLK 477 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHHHHhcCCCCeEEeEEEE--cCCCCceEEEECC
Confidence 999999999999999999999999999999987 6999999999999998888888999988864 5678999999999
Q ss_pred CCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHH
Q psy5289 710 GSCVKSYGVHCAKMAGYPEDMLEQARDLMKEY 741 (813)
Q Consensus 710 G~~~~s~gi~vA~~ag~p~~vi~~A~~~~~~l 741 (813)
|.+++|||++||+++|+|++||++|++++.+.
T Consensus 478 G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~ 509 (771)
T TIGR01069 478 GIPGESYAFEIAQRYGIPHFIIEQAKTFYGEF 509 (771)
T ss_pred CCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998753
No 11
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=2.4e-52 Score=433.27 Aligned_cols=233 Identities=42% Similarity=0.762 Sum_probs=202.1
Q ss_pred CCCCcccCCCcceEEEEccccCeeEec-CCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccC
Q psy5289 509 YVRPCMKPMGTGSLVLNQCRHPIVELQ-GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC 587 (813)
Q Consensus 509 ~~rP~~~~~~~~~l~i~~~rhp~~e~~-~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa 587 (813)
||||+|.+ +..+.|+++|||+++.. ....+||||+.++.+..++++||||||||||||||+||++++|||+|+||||
T Consensus 1 y~~P~~~~--~~~l~i~~~~HPll~~~~~~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA 78 (235)
T PF00488_consen 1 YCRPKISE--EKSLKIKEGRHPLLEEKLENKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPA 78 (235)
T ss_dssp EB-EEEES--TTEEEEEEE--TTHHHHTTTSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSS
T ss_pred CcccEEcC--CCCEEEEeccCCEEeccccCCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeee
Confidence 89999997 35899999999999876 4568999999998766589999999999999999999999999999999999
Q ss_pred CccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCE
Q psy5289 588 DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPF 667 (813)
Q Consensus 588 ~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~ 667 (813)
+.+.++++|+|+++++..|++..+.|+|+.||++++.|+..+++++|||+||+|+||++.||.+++++++++|.++.++.
T Consensus 79 ~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~ 158 (235)
T PF00488_consen 79 ESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCF 158 (235)
T ss_dssp SEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-E
T ss_pred cccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999745899
Q ss_pred EEEEcCChHHHhhcCCCCceEeeEEEEEEECCeEEEEEEeccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Q psy5289 668 TLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEY 743 (813)
Q Consensus 668 ~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i~~~y~l~~G~~~~s~gi~vA~~ag~p~~vi~~A~~~~~~le~ 743 (813)
++++||++++.++....+.+.++||.+..+++.++|+|++.+|.++.|||+++|+++|+|++||+||+++++++++
T Consensus 159 ~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~f~Ykl~~G~~~~S~ai~iA~~~g~p~~II~rA~~i~~~l~~ 234 (235)
T PF00488_consen 159 VIIATHFHELAELLERNPNVQNYHMEVEEDNDSLTFTYKLKEGICSSSYAIEIAKLAGLPEEIIERAKEILKQLEE 234 (235)
T ss_dssp EEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEES--SSTCHHHHHHHTT--HHHHHHHHHHHHHHHT
T ss_pred EEEEeccchhHHHhhhCccccccceeeeeeccccceeEEEeECCCCCcHHHHHHHHhCcCHHHHHHHHHHHHHHhc
Confidence 9999999999998888889999999999999999999999999999999999999999999999999999999985
No 12
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.5e-47 Score=391.72 Aligned_cols=211 Identities=40% Similarity=0.679 Sum_probs=200.7
Q ss_pred EEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcC
Q psy5289 524 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVG 603 (813)
Q Consensus 524 i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~ 603 (813)
++++|||+++...+..+||||++++.+.+++++||||||+|||||+|+++++++|||+|+||||+.++++++|+|+++++
T Consensus 2 ~~~~rHPll~~~~~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~ 81 (218)
T cd03286 2 FEELRHPCLNASTASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIG 81 (218)
T ss_pred cccccCCEEecccCCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecC
Confidence 68999999986655679999999998888999999999999999999999999999999999999999999999999999
Q ss_pred CchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCC
Q psy5289 604 AADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRV 683 (813)
Q Consensus 604 ~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~ 683 (813)
..|++..+.|+|+.||++++.|++.+++++|+|||||++||++.|+.++++++++++.+..++++|++||++++......
T Consensus 82 ~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~ 161 (218)
T cd03286 82 ARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHE 161 (218)
T ss_pred cccccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999987348999999999999988777
Q ss_pred CCceEeeEEEEEEEC------CeEEEEEEeccCCCCCcHHHHHHHHCCCCHHHHHHH
Q psy5289 684 IPTFRNVQVSALEQE------DNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQA 734 (813)
Q Consensus 684 ~~~v~~~~~~~~~~~------~~i~~~y~l~~G~~~~s~gi~vA~~ag~p~~vi~~A 734 (813)
.+.+.++||.+..++ ++++|+||+.+|++++|||+++|+++|+|++||+||
T Consensus 162 ~~~v~~~~m~~~~~~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 162 HGGVRLGHMACAVKNESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred CcceEEEEEEEEEeccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 889999999987765 789999999999999999999999999999999997
No 13
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=5.8e-47 Score=390.60 Aligned_cols=219 Identities=55% Similarity=0.960 Sum_probs=207.6
Q ss_pred EEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcC
Q psy5289 524 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVG 603 (813)
Q Consensus 524 i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~ 603 (813)
|+++|||+++.+.+..+||||++++.+++++++||||||||||||||+||.+++|+|+|+||||..+.+++++.++++++
T Consensus 2 ~~~~~hpll~~~~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~ 81 (222)
T cd03285 2 LKEARHPCVEAQDDVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVG 81 (222)
T ss_pred ccccCCCEEeccCCCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeec
Confidence 68999999998656689999999999889999999999999999999999999999999999999999999999999999
Q ss_pred CchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCC
Q psy5289 604 AADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRV 683 (813)
Q Consensus 604 ~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~ 683 (813)
..|++..+.|+|+.+|.+++.+++.+++|+||||||||+||++.|+.++++++++++.+..|+++|++||++++.+++++
T Consensus 82 l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~ 161 (222)
T cd03285 82 ASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADE 161 (222)
T ss_pred cccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999899876458999999999999999999
Q ss_pred CCceEeeEEEEEEEC--CeEEEEEEeccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q psy5289 684 IPTFRNVQVSALEQE--DNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742 (813)
Q Consensus 684 ~~~v~~~~~~~~~~~--~~i~~~y~l~~G~~~~s~gi~vA~~ag~p~~vi~~A~~~~~~le 742 (813)
++.+.+|+|.....+ ++++|+|++.+|.+++|||+++|+++|+|++||+||++++++++
T Consensus 162 ~~~i~~g~~~~~~~~~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~~~ 222 (222)
T cd03285 162 VPNVKNLHVTALTDDASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALELE 222 (222)
T ss_pred CCCeEEEEEEEEEeCCCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhcC
Confidence 999999999888765 89999999999999999999999999999999999999998763
No 14
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=4.5e-46 Score=381.98 Aligned_cols=213 Identities=40% Similarity=0.736 Sum_probs=199.3
Q ss_pred EEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHh
Q psy5289 522 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601 (813)
Q Consensus 522 l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~ 601 (813)
|.|+++|||+++......+||||+++..+.|++++|+||||+|||||||+++++.+++|.|+++|+..++++++++|+++
T Consensus 1 ~~i~~~rHPlle~~~~~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~ 80 (222)
T cd03287 1 ILIKEGRHPMIESLLDKSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTR 80 (222)
T ss_pred CeeecccCCEEeccCCCCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEE
Confidence 46899999999976556799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhc
Q psy5289 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLS 681 (813)
Q Consensus 602 ~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~ 681 (813)
++..|++..+.|+|+.||++++.++..+++++|+||||||+|||+.|+.++++++++++.+..++++|++||++++..+.
T Consensus 81 ~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 81 MGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred ecCccccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999874489999999999999987
Q ss_pred CCC-CceEeeEEEEEE--------ECCeEEEEEEeccCCCCCcHHHHHHHHCCCCHHHHHHH
Q psy5289 682 RVI-PTFRNVQVSALE--------QEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQA 734 (813)
Q Consensus 682 ~~~-~~v~~~~~~~~~--------~~~~i~~~y~l~~G~~~~s~gi~vA~~ag~p~~vi~~A 734 (813)
.+. ..+.|+||.+.. ++++++|+||+.+|+++.|||++||+++|+|++||+||
T Consensus 161 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 161 RRFEGSIRNYHMSYLESQKDFETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred HhcccCeEEEEEEEEEeccccccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 654 468999998654 24689999999999999999999999999999999997
No 15
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=1.9e-43 Score=363.16 Aligned_cols=213 Identities=45% Similarity=0.762 Sum_probs=202.0
Q ss_pred EEccccCeeEecC-CceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhc
Q psy5289 524 LNQCRHPIVELQG-GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRV 602 (813)
Q Consensus 524 i~~~rhp~~e~~~-~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~ 602 (813)
|+++|||+++... ...+||||++++.+. ++++||||||||||||||+++++++++|.|+++|+..+.+++++++++++
T Consensus 2 i~~~~hp~~~~~~~~~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~ 80 (216)
T cd03284 2 IEGGRHPVVEQVLDNEPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRI 80 (216)
T ss_pred cccccCCEEeeccCCCceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccC
Confidence 6899999999753 357999999999765 89999999999999999999999999999999999999999999999999
Q ss_pred CCchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcC
Q psy5289 603 GAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSR 682 (813)
Q Consensus 603 ~~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~ 682 (813)
+..|++..+.|+|+.||.+++.++..+++|+|+|||||++||++.|+.++++++++++.+..++++|++||++++..+++
T Consensus 81 ~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~ 160 (216)
T cd03284 81 GASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEG 160 (216)
T ss_pred CchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999899999998733899999999999999999
Q ss_pred CCCceEeeEEEEEEECCeEEEEEEeccCCCCCcHHHHHHHHCCCCHHHHHHHHHH
Q psy5289 683 VIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDL 737 (813)
Q Consensus 683 ~~~~v~~~~~~~~~~~~~i~~~y~l~~G~~~~s~gi~vA~~ag~p~~vi~~A~~~ 737 (813)
+.+.+.+++|.+..++++++|+|++.+|++..|||+++|+++|+|++||+||+++
T Consensus 161 ~~~~v~~~~~~~~~~~~~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~ 215 (216)
T cd03284 161 KLPRVKNFHVAVKEKGGGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREI 215 (216)
T ss_pred cCCCeEEEEEEEEeeCCeEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHh
Confidence 9999999999999899999999999999999999999999999999999999976
No 16
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=7.5e-41 Score=340.17 Aligned_cols=200 Identities=36% Similarity=0.664 Sum_probs=188.5
Q ss_pred EEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcC
Q psy5289 524 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVG 603 (813)
Q Consensus 524 i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~ 603 (813)
|+++|||+++.. ..+++|||++++...|++++||||||+||||++|+++++++|+|+|+|+||..+.++++++++++++
T Consensus 2 i~~~~hpll~~~-~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~ 80 (204)
T cd03282 2 IRDSRHPILDRD-KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLS 80 (204)
T ss_pred cccccCCeEecc-CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecC
Confidence 689999999864 3579999999999989999999999999999999999999999999999999999999999999999
Q ss_pred CchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCC
Q psy5289 604 AADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRV 683 (813)
Q Consensus 604 ~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~ 683 (813)
..|++..+.|+|+.||+++..++..+++++|+|||||++|||+.|+.++++++++++.+ .++++|++||++++++....
T Consensus 81 ~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 81 NDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred CccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999987 59999999999999998887
Q ss_pred CCceEeeEEEEEEE-CCeEEEEEEeccCCCC-CcHHHHHHHHCC
Q psy5289 684 IPTFRNVQVSALEQ-EDNLVLLYQVKPGSCV-KSYGVHCAKMAG 725 (813)
Q Consensus 684 ~~~v~~~~~~~~~~-~~~i~~~y~l~~G~~~-~s~gi~vA~~ag 725 (813)
.+.+.++||..... ++++.|+||+.+|++. .|||++|||+..
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 160 KSCVVHLHMKAQSINSNGIEMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred CCCeEEEEEEEEEcCCCceeeEEEEeeCCCCCCccHHHHHHHhh
Confidence 88899999988764 4889999999999999 999999999753
No 17
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.3e-40 Score=341.47 Aligned_cols=202 Identities=39% Similarity=0.667 Sum_probs=185.6
Q ss_pred EEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcC
Q psy5289 524 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVG 603 (813)
Q Consensus 524 i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~ 603 (813)
|+++|||+++.. ...+||||+.++.+.+++++||||||+|||||||+++.+.+++|.|+++|+..+.++++|+++++++
T Consensus 2 i~~~rHPll~~~-~~~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~ 80 (213)
T cd03281 2 IQGGRHPLLELF-VDSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMS 80 (213)
T ss_pred cccccCCEEecc-CCceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeC
Confidence 689999999863 3479999999986545899999999999999999999999999999999999999999999999999
Q ss_pred CchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc--CCCEEEEEcCChHHHhhc
Q psy5289 604 AADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASH--RQPFTLFATHFHEIALLS 681 (813)
Q Consensus 604 ~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~--~~~~~l~~TH~~el~~~~ 681 (813)
..|++..+.|+|+.||++++.++..+++++|+|||||++|||+.++.++++++++++.+. .++++|++||++++....
T Consensus 81 ~~~si~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 81 SRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CccChhhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999998762 135899999999999866
Q ss_pred C--CCCceEeeEEEEEEE------CCeEEEEEEeccCCCCCcHHHHHHHHCCC
Q psy5289 682 R--VIPTFRNVQVSALEQ------EDNLVLLYQVKPGSCVKSYGVHCAKMAGY 726 (813)
Q Consensus 682 ~--~~~~v~~~~~~~~~~------~~~i~~~y~l~~G~~~~s~gi~vA~~ag~ 726 (813)
. ..+.+.++||.+..+ .++++|+|++.+|++++|||++||+++|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 161 LLPERLKIKFLTMEVLLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred hhccCCceEEEEEEEEEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 4 568899999998776 48999999999999999999999999996
No 18
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=2.9e-39 Score=325.18 Aligned_cols=184 Identities=52% Similarity=0.896 Sum_probs=175.9
Q ss_pred eEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCCCCc
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENS 633 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~~ 633 (813)
+++||||||||||||||++++++++||.|+++||+.+.++++|+++++++..+++..+.|+|+.||++++.++..+++|+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCeEEEEEEeccCCCC
Q psy5289 634 LVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCV 713 (813)
Q Consensus 634 LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i~~~y~l~~G~~~ 713 (813)
|+|+|||++|||+.++..+.+++++++.++.++++|++||++++..+++..+.+.++||.+..+++++.|+|++.+|++.
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~Y~l~~G~~~ 160 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEETENLTFLYKLTPGVAG 160 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEecCceeEEEEEeECCCC
Confidence 99999999999999999999999998876348999999999999999988889999999998888899999999999999
Q ss_pred CcHHHHHHHHCCCCHHHHHHHHHH
Q psy5289 714 KSYGVHCAKMAGYPEDMLEQARDL 737 (813)
Q Consensus 714 ~s~gi~vA~~ag~p~~vi~~A~~~ 737 (813)
.|||+++|+++|+|++|++||+++
T Consensus 161 ~s~a~~~a~~~g~~~~i~~~a~~~ 184 (185)
T smart00534 161 KSYGIEVAKLAGLPKEVIERAKEI 184 (185)
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHh
Confidence 999999999999999999999876
No 19
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.1e-38 Score=367.61 Aligned_cols=460 Identities=21% Similarity=0.338 Sum_probs=362.4
Q ss_pred hhhcccCchhHHHHHHHhhCcCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCcHHHHHHHHhcc-CCCHHHHHHH
Q psy5289 258 ILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRK-KAGLKDCYRV 336 (813)
Q Consensus 258 lLn~t~T~~G~RlLr~wL~~PL~d~~~I~~R~d~Ve~l~~~~~lr~~l~~~~Lk~i~Dlerll~rl~~~-~~~~~d~~~l 336 (813)
+..++.|+.|+..|++. .|..|.+.|+...+-++++....+. ... ..+.++.|+...+.++..+ ...+.++..+
T Consensus 16 ~~~~~~s~~g~~~~~~l--~p~~~~~~i~~~~~e~~~~~~~~~~-~g~--~~~~~l~~i~~~l~~~e~g~~l~~~el~~i 90 (753)
T COG1193 16 LASYAQSSLGLEELKNL--KPRTDLELIEEELSETAEALDILED-EGL--PPLGGLNDVSEALGRLEKGGRLHVEELLEI 90 (753)
T ss_pred HHHhccCHHHHHHHHhc--CccccHHHHHHHHHHHHHHHHHHhc-cCC--CCchhhhhhHHHHHHHhhcccCCHHHHHHH
Confidence 46789999999999996 9999999999999998877642211 000 1467777888889888754 5678888888
Q ss_pred HHHHhhHHHHHHHHHHH--HhhHhHHh---HHHHHHh----hhh---hhhh--HHHHHHHHHHHHHHHHHHHHhC----c
Q psy5289 337 YEGVSQLPKLISILESL--VQNVEASN---LNTILSS----LQS---LKMM--DRKDAVMDKMKEYLESTARRLN----L 398 (813)
Q Consensus 337 ~~~l~~l~~l~~~l~~~--~~~~~~~~---l~~~~~~----~~~---~~~~--~~l~~l~~~~~~~~~~~~~~~~----~ 398 (813)
...+.....+...+... ....+... +..+... ++. ..+. ..+..++..+.....++.+.+. .
T Consensus 91 ~~~l~~~~~lkr~~~~~e~~~~~~~~~~~~~~~l~~~i~~~id~~g~i~d~as~~l~~ir~~lr~~~~~i~~~l~~~~~~ 170 (753)
T COG1193 91 SDFLRGFRALKRAIKKLERIKRTLALALIELSDLELEINIPIDDDGLIKDRASFELDAIRRQLRDLEEEIRDKLESLIRS 170 (753)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHhhhhcccccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 87777666666555431 11011111 1111111 111 1111 5566666665444444433221 1
Q ss_pred ccccce--eEeecCc-ceEEEEecccccccCcCceEeeeecce--EEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5289 399 VADKTI--KLENSPQ-GFAYRITMKLNNSIDDRYTILDTVRGG--VRFQDDRLATANTQYQAIQREYETHQQSIVEEVIG 473 (813)
Q Consensus 399 ~~~~~l--k~~~~~~-gy~i~v~~~~~~~~~~~~~~~~~~~~~--~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~ 473 (813)
...+.+ .+...+. .|++.|.......++. +..+++.++ .+..|.....+++++..+..+-......++.++..
T Consensus 171 ~~~~~L~e~~v~~r~~r~vlpvk~~fk~~i~g--iv~d~sssg~tl~ieP~~vv~l~n~~~~l~~eE~~e~e~il~~lsa 248 (753)
T COG1193 171 KEAKYLQDRIVTTRDGREVLPVKAEFKGAIKG--IVHDTSSSGATLYIEPRSVVKLNNELRALLVEEDEEEERILRELSA 248 (753)
T ss_pred hhhHhhhhceEeccCCeEEeHHHHHhhhhcCc--eEeecccccCeeeecchHHHhhccHhhhhhccchHhHHHHHHHHHH
Confidence 101112 2333444 5666654443344442 344455555 66669999999999999988888888899999999
Q ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCCcceEEEEccccCeeEecCCceeeccccccccCCce
Q psy5289 474 ISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVS 553 (813)
Q Consensus 474 ~~~~~~~~l~~~~~~ia~LD~l~S~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~ 553 (813)
.+.++.+.+..+...++++|++.|-+.++.. ..+++|.+.+ +..+.+.+++||++. ..||+++.+..+ -.
T Consensus 249 ~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~--~~~v~P~~~~--~~~l~l~~~~HPll~-----~~v~~~i~~~~e-~~ 318 (753)
T COG1193 249 LVAPVIPELEILLEIIGELDFIEAKVRYAKA--LKGVKPDFSN--DGVLELLDARHPLLK-----EDVPNDLELGEE-LD 318 (753)
T ss_pred HHhhhhHHHHHHHHHhhhhHHHHHHHHHHHh--hccCCCccCC--CceEEeccccCccCc-----cccccccccccc-cc
Confidence 9999999999999999999999999999998 8899999984 578999999999987 238999999865 47
Q ss_pred eEEEEccCCCChhHHHhhhhhhhhhhhccccccCCcc-chhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCCCC
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSA-TISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTEN 632 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~-~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~ 632 (813)
.++|||||++|||+.||++|+..+|+|.|.++|+... ++++|+.+|..+|..+++....|||++.|..++.++..+.
T Consensus 319 ~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~i~aDIGDeQsIeqsLSTFSshm~~i~~il~~~d-- 396 (753)
T COG1193 319 RLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIVEILEKAD-- 396 (753)
T ss_pred eeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHHhhhccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--
Confidence 8999999999999999999999999999999999988 8999999999999999999999999999999999996544
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCeEEEEEEeccCCC
Q psy5289 633 SLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSC 712 (813)
Q Consensus 633 ~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i~~~y~l~~G~~ 712 (813)
+|+++||.|+||||.+|.+++.++++++.+ .++.++.+||+.++..++...+.+.|..|. .+.+.+.++|++..|..
T Consensus 397 sLvl~DElg~GTdp~EgaaLai~ile~l~~-~~~~~~~tTH~~elk~~~~~~~~v~nas~~--fd~etL~ptY~l~~G~~ 473 (753)
T COG1193 397 SLVLFDELGSGTDPDEGAALAIAILEDLLE-KPAKIVATTHYRELKALAAEREGVENASME--FDAETLRPTYRLLEGVP 473 (753)
T ss_pred hhHHHHHhhcCCCcchhHHHHHHHHHHHHh-cccceehHhhHHHHHHHHhcchhhhchhhh--hhHHHhhHHHHHhcCCc
Confidence 999999999999999999999999999998 799999999999999998888889887775 45678999999999999
Q ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHH
Q psy5289 713 VKSYGVHCAKMAGYPEDMLEQARDLMK 739 (813)
Q Consensus 713 ~~s~gi~vA~~ag~p~~vi~~A~~~~~ 739 (813)
++||++++|..+|+|..+|++|+....
T Consensus 474 g~S~Af~ia~rlGl~~~iie~a~~~~g 500 (753)
T COG1193 474 GRSNAFDIALRLGLPEPIIEEAKTEFG 500 (753)
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHhcC
Confidence 999999999999999999999998763
No 20
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=1.5e-36 Score=330.64 Aligned_cols=274 Identities=30% Similarity=0.506 Sum_probs=230.7
Q ss_pred ccchhhhhhcccCchhHHHHHHHhhCcCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCcHHHHHHHHhccCCCHH
Q psy5289 252 YDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLK 331 (813)
Q Consensus 252 ~~SLf~lLn~t~T~~G~RlLr~wL~~PL~d~~~I~~R~d~Ve~l~~~~~lr~~l~~~~Lk~i~Dlerll~rl~~~~~~~~ 331 (813)
++|||++||+|+|++|+|+|++|+++|++|.++|++||++|++|.++..++..++. .|+++||++|++.|+..+..++.
T Consensus 1 ~~sL~~~l~~~~T~~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~~l~~~l~~-~L~~~~Di~~~l~~~~~~~~~~~ 79 (308)
T smart00533 1 KGSLFELLNHTKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVENPELRQKLRQ-LLKRIPDLERLLSRIERGRASPR 79 (308)
T ss_pred CCCHHHHHccCCCcHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhChHHHHHHHH-HHccCCcHHHHHHHHHcCCCCHH
Confidence 37999999999999999999999999999999999999999999999999999997 99999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH-------HhhHh----HHhHHHH---HHhhhhhh-----hh-----HHHHHHHHHHH-
Q psy5289 332 DCYRVYEGVSQLPKLISILESL-------VQNVE----ASNLNTI---LSSLQSLK-----MM-----DRKDAVMDKMK- 386 (813)
Q Consensus 332 d~~~l~~~l~~l~~l~~~l~~~-------~~~~~----~~~l~~~---~~~~~~~~-----~~-----~~l~~l~~~~~- 386 (813)
|+..+++++..++.+.+.+... +...+ ...+..+ ..++.... .+ ++||++++.+.
T Consensus 80 el~~l~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~s~~Ld~lr~~~~~ 159 (308)
T smart00533 80 DLLRLYDSLEGLKEIRQLLESLDGPLLGLLLKVILEPLLELLELLLELLNDDDPLEVNDGGLIKDGFDPELDELREKLEE 159 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhccchHHHHHHHHHHhccCCcccccCCCeeCCCCCHHHHHHHHHHHH
Confidence 9999999999888888777541 00111 1111111 11111000 01 56666665544
Q ss_pred ------HHHHHHHHHhCcccccceeEeecCc-ceEEEEecccccccCcCceEeeeecceEEEeChhHHHHHHHHHHHHHH
Q psy5289 387 ------EYLESTARRLNLVADKTIKLENSPQ-GFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQRE 459 (813)
Q Consensus 387 ------~~~~~~~~~~~~~~~~~lk~~~~~~-gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~ 459 (813)
+.++++.++++. +.+++.+.++ ||+++|+.+....+|+.|+..+++++.++|+|+++.++++++.++..+
T Consensus 160 l~~~l~~~~~~~~~~~~~---~~l~~~~~~~~g~~i~v~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~l~~~~~~~~~~ 236 (308)
T smart00533 160 LEEELEELLKKEREELGI---DSLKLGYNKVHGYYIEVTKSEAKKVPKDFIRRSSLKNTERFTTPELKELENELLEAKEE 236 (308)
T ss_pred HHHHHHHHHHHHHHHhCC---CceEEeEeccEEEEEEecchhhccCChHHHHHhhhcccceeeCHHHHHHHHHHHHHHHH
Confidence 344444444544 4678899999 999999988888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCCcceEEEEccccCeeE
Q psy5289 460 YETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVE 533 (813)
Q Consensus 460 ~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~S~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~e 533 (813)
+.+.+..+++++.+.+.++.+.|..+.+++|+|||++|+|.+|.. ++||||+|++ ++.+.|+++|||+++
T Consensus 237 ~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~a~~--~~~~~P~i~~--~~~l~i~~~rHPlle 306 (308)
T smart00533 237 IERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAE--GNYVRPEFVD--SGELEIKNGRHPVLE 306 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCcCCeeCC--CCCEEEeeCCCCccc
Confidence 999999999999999999999999999999999999999999988 8899999986 357999999999997
No 21
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=100.00 E-value=1.9e-37 Score=314.66 Aligned_cols=196 Identities=28% Similarity=0.434 Sum_probs=182.8
Q ss_pred EEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcC
Q psy5289 524 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVG 603 (813)
Q Consensus 524 i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~ 603 (813)
++++|||+++ ..++|+||++++. |++++||||||||||||||+|++.+++++.|+++|+..+.++ .+.+|.+++
T Consensus 2 ~~~~~hp~~~---~~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~~~~ 75 (199)
T cd03283 2 AKNLGHPLIG---REKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFTSIR 75 (199)
T ss_pred CcccCCCeec---CCCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEEecc
Confidence 6899999998 3479999999985 589999999999999999999999999999999999988888 788999999
Q ss_pred CchhHhhccchhHHHHHHHHHHHHhCC--CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhc
Q psy5289 604 AADSQYRGISTFMMEMKETATVIKKCT--ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLS 681 (813)
Q Consensus 604 ~~d~~~~~~s~f~~e~~~~~~il~~~~--~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~ 681 (813)
..|++..+.|.|..++.++..++..+. +|+++|+|||++|||+.++..+.+++++.+.+ .+.++|++||+++++...
T Consensus 76 ~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 76 VSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELADLL 154 (199)
T ss_pred chhccccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHHHHhh
Confidence 999999999999999999999999988 99999999999999999998888888888876 589999999999999988
Q ss_pred CCCCceEeeEEEEEEECCeEEEEEEeccCCCCCcHHHHHHHHCCC
Q psy5289 682 RVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGY 726 (813)
Q Consensus 682 ~~~~~v~~~~~~~~~~~~~i~~~y~l~~G~~~~s~gi~vA~~ag~ 726 (813)
+..+.+.++||.+..+++.++|+|++.+|+|+.|||+++|+++|+
T Consensus 155 ~~~~~v~~~~~~~~~~~~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 155 DLDSAVRNYHFREDIDDNKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred hcCCCeEEEEEEEEEECCeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 888899999999999999999999999999999999999999996
No 22
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=100.00 E-value=3.9e-37 Score=313.80 Aligned_cols=199 Identities=29% Similarity=0.497 Sum_probs=181.7
Q ss_pred EEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCc-cchhHHHHHHHh
Q psy5289 523 VLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS-ATISVVDQIFTR 601 (813)
Q Consensus 523 ~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~-~~~~~~d~i~~~ 601 (813)
+|+++|||+++.. ..+++|+++++..+ .++++||||||||||||||+++.+.+++|.|+++|+.. ..++++++++++
T Consensus 1 ~~~~~~hp~~~~~-~~~~~~~~~~i~~~-~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~ 78 (200)
T cd03280 1 RLREARHPLLPLQ-GEKVVPLDIQLGEN-KRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFAD 78 (200)
T ss_pred CCcccCCCEEecc-CCceEcceEEECCC-ceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEe
Confidence 3789999999965 55799999998743 26899999999999999999999999999999999985 478889999999
Q ss_pred cCCchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhc
Q psy5289 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLS 681 (813)
Q Consensus 602 ~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~ 681 (813)
++..+++..+.|+|+.||+++..++..+++|+++|+|||++|||+.++..+.+.+++.+.+ .++++|++||++++..++
T Consensus 79 lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~~l~~~~ 157 (200)
T cd03280 79 IGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHYGELKAYA 157 (200)
T ss_pred cCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888888876 589999999999999999
Q ss_pred CCCCceEeeEEEEEEECCeEEEEEEeccCCCCCcHHHHHHHHCCC
Q psy5289 682 RVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGY 726 (813)
Q Consensus 682 ~~~~~v~~~~~~~~~~~~~i~~~y~l~~G~~~~s~gi~vA~~ag~ 726 (813)
++...+.+|++... .+++.|+|++++|++++|||+++|+.+|+
T Consensus 158 d~~~~l~~g~l~~~--~~~~~~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 158 YKREGVENASMEFD--PETLKPTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred hcCCCeEEEEEEEe--cCcccEEEEEeECCCCCcHHHHHHHHcCC
Confidence 99999999999754 67899999999999999999999999996
No 23
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=100.00 E-value=1.6e-36 Score=309.87 Aligned_cols=200 Identities=47% Similarity=0.781 Sum_probs=187.4
Q ss_pred EEccccCeeEec-CCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhc
Q psy5289 524 LNQCRHPIVELQ-GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRV 602 (813)
Q Consensus 524 i~~~rhp~~e~~-~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~ 602 (813)
++++|||+++.. ...++||||++++. |++++||||||||||||||+|+...+++|.|+++|+..+.+++++++++.+
T Consensus 2 ~~~~~~p~l~~~~~~~~~~~~~~~l~~--~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~ 79 (202)
T cd03243 2 IKGGRHPVLLALTKGETFVPNDINLGS--GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRI 79 (202)
T ss_pred cccccCCEEeccccCCceEeeeEEEcC--CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEe
Confidence 689999999864 34579999999984 689999999999999999999999999999999999999999999999999
Q ss_pred CCchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcC
Q psy5289 603 GAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSR 682 (813)
Q Consensus 603 ~~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~ 682 (813)
+..+++..+.|+|+.||+++..++..+.+|+++|+|||++|||+.++..+.+.+++.+.+ .++++|++||++++...++
T Consensus 80 ~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 80 GAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHFHELADLPE 158 (202)
T ss_pred cCcccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECChHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999988888888876 5899999999999999999
Q ss_pred CCCceEeeEEEEEEECCeEEEEEEeccCCCCCcHHHHHHHHCCC
Q psy5289 683 VIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGY 726 (813)
Q Consensus 683 ~~~~v~~~~~~~~~~~~~i~~~y~l~~G~~~~s~gi~vA~~ag~ 726 (813)
+.+.+.+++|....+++++.|+|++.+|.+.+|||+.+|+..|+
T Consensus 159 ~~~~l~~~~~~~~~~~~~~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 159 QVPGVKNLHMEELITTGGLTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred cCCCeEEEEEEEEecCCeeeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 88999999999988888999999999999999999999999986
No 24
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=99.92 E-value=1.5e-24 Score=221.66 Aligned_cols=204 Identities=27% Similarity=0.511 Sum_probs=148.0
Q ss_pred HHHHhhcccccccCCCccccccchhhhhhcccCchhHHHHHHHhhCcCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHhc
Q psy5289 232 SAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALR 311 (813)
Q Consensus 232 ~~Tl~~LeI~~~~~~~~~k~~~SLf~lLn~t~T~~G~RlLr~wL~~PL~d~~~I~~R~d~Ve~l~~~~~lr~~l~~~~Lk 311 (813)
++|+++|||+++..++. + ++|||++||+|.|++|+|+|++||++|++|+++|++||++|++|.+|++++..++. .|+
T Consensus 1 ~~Tl~~L~i~~~~~~~~-~-~~sL~~~ln~t~T~~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~n~~~~~~~~~-~l~ 77 (204)
T PF05192_consen 1 ANTLKSLEIFENSRSGK-K-KGSLFSLLNRTSTPMGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQNEELREELRS-ILK 77 (204)
T ss_dssp HHHHHHTTSSSBTTTSS-S-STSHHHHH---SSHHHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHHTHHHHHHHHH-HHT
T ss_pred ChhHHhccCCCCCCCCC-C-CCcHHHHHhcCCChHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhhhHhhhhhh-hhh
Confidence 58999999998876553 4 78999999999999999999999999999999999999999999999999999997 999
Q ss_pred CCCcHHHHHHHHhccCCCHHHHHHHHHHHhhHHHHHHHHHHHHhhHhHHhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q psy5289 312 GLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLES 391 (813)
Q Consensus 312 ~i~Dlerll~rl~~~~~~~~d~~~l~~~l~~l~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 391 (813)
+++|+++++.++..+.++++++..+++++..++.+.+.+....... +.+..+...+.. +..+.+.++..
T Consensus 78 ~~~di~~~l~~l~~~~~~~~~~~~l~~~l~~~~~i~~~~~~~~~~~--~~L~~l~~~l~~------~~~l~~~i~~~--- 146 (204)
T PF05192_consen 78 KIPDIERILKRLRSGRASPQDLLKLYKTLRSIIEIKKLLSERLESS--PLLRKLLSSLPD------FSELLDEIEST--- 146 (204)
T ss_dssp TC-SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCTSSST--HHHHHHHHHHCS------HHHHHHHHHHH---
T ss_pred ccchHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHhhcccH--HHHHHHHHhccc------HHHHHHHHHHH---
Confidence 9999999999999998899999999999988888876643211110 223333332221 11222222211
Q ss_pred HHHHhCcccccceeEeecCcceEEEEecccccccCcCceEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5289 392 TARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEV 471 (813)
Q Consensus 392 ~~~~~~~~~~~~lk~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l 471 (813)
+..+ +.. . ......++. +...+..++.++
T Consensus 147 ----id~~--~~~----~---------~~~~~~I~~--------------------------------~~~~~~~i~~~L 175 (204)
T PF05192_consen 147 ----IDED--KSL----A---------IREQDIIRD--------------------------------INDEEQRILREL 175 (204)
T ss_dssp ----BHTS---CC----H---------CTTSSSBST--------------------------------HHHHHHHHHHHH
T ss_pred ----HhcC--cHH----H---------HhcccHHHH--------------------------------HHHHHHHHHHHH
Confidence 1110 000 0 000001110 666778899999
Q ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHH
Q psy5289 472 IGISAGYTQTLNQLSDVLAQFDVLVSFSI 500 (813)
Q Consensus 472 ~~~~~~~~~~l~~~~~~ia~LD~l~S~A~ 500 (813)
...+.+|.+.|..+.+++|+|||++|||.
T Consensus 176 ~~~i~~~~~~l~~~~~~i~eLD~l~s~A~ 204 (204)
T PF05192_consen 176 TNEIRKYSPELRELSEAIAELDVLISFAK 204 (204)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999995
No 25
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.86 E-value=1.7e-21 Score=191.81 Aligned_cols=138 Identities=35% Similarity=0.509 Sum_probs=115.7
Q ss_pred EEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh----------ccccccCCccchh
Q psy5289 524 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ----------IGCFVPCDSATIS 593 (813)
Q Consensus 524 i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq----------~g~~vpa~~~~~~ 593 (813)
|..++||.+ ++||++.+.. +.+++|||||||||||++|+++.+..+++ .|+++|+....+
T Consensus 2 i~~~~~~~~-------~~~~~i~~~~--~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~- 71 (162)
T cd03227 2 IVLGRFPSY-------FVPNDVTFGE--GSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL- 71 (162)
T ss_pred ceeCCCCEE-------EeccEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE-
Confidence 567899976 5799999863 37999999999999999999999999998 999999888665
Q ss_pred HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCC--CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEE
Q psy5289 594 VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCT--ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFA 671 (813)
Q Consensus 594 ~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~--~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~ 671 (813)
++++++ .|..+.++..++.++..++ +|+++|+|||++|||+.++..++..+.+++.+ ++++|++
T Consensus 72 ----i~~~~~--------lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~--~~~vii~ 137 (162)
T cd03227 72 ----IFTRLQ--------LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK--GAQVIVI 137 (162)
T ss_pred ----ehheee--------ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEE
Confidence 455444 5556777777788877655 89999999999999999999999988887654 8999999
Q ss_pred cCChHHHhhcCCCC
Q psy5289 672 THFHEIALLSRVIP 685 (813)
Q Consensus 672 TH~~el~~~~~~~~ 685 (813)
||++++...+++..
T Consensus 138 TH~~~~~~~~d~~~ 151 (162)
T cd03227 138 THLPELAELADKLI 151 (162)
T ss_pred cCCHHHHHhhhhEE
Confidence 99999998876543
No 26
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.85 E-value=5.1e-21 Score=197.78 Aligned_cols=162 Identities=15% Similarity=0.220 Sum_probs=129.6
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh--------------------hhhhccccccCCcc-------
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV--------------------FLAQIGCFVPCDSA------- 590 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~--------------------~laq~g~~vpa~~~------- 590 (813)
+.+|.++++|++.+|++++|+||||||||||||+++.+. -+|+.-.|+|....
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV 93 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTV 93 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEE
Confidence 467888999999999999999999999999999996532 12344455554421
Q ss_pred ---------------------chhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q psy5289 591 ---------------------TISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 591 ---------------------~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d 648 (813)
....++..+..+|+.+...+...++|++.+|++.|+++ |.++++++|||||+.+|...
T Consensus 94 ~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~ 173 (258)
T COG1120 94 YELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173 (258)
T ss_pred eehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHH
Confidence 11134456888899988899999999998888887776 68999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEEECCe
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQEDN 700 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~~~~~ 700 (813)
...+.. ++..+.++.|.++|+++||.+++. +++++..+++|.+.+.+.+.+
T Consensus 174 Q~evl~-ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 174 QIEVLE-LLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcch
Confidence 888855 666677557999999999998875 788888899999988776543
No 27
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=7.9e-21 Score=195.33 Aligned_cols=156 Identities=21% Similarity=0.211 Sum_probs=120.9
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-----------------hccccccCCcc------------
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-----------------QIGCFVPCDSA------------ 590 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-----------------q~g~~vpa~~~------------ 590 (813)
.+..|++|++.+|++++|+||||||||||+|++.++.... +.-.|||....
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~ 97 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDV 97 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHH
Confidence 5778999999999999999999999999999996532110 11236665330
Q ss_pred -------ch-----------hHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q psy5289 591 -------TI-----------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFG 651 (813)
Q Consensus 591 -------~~-----------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~ 651 (813)
+. ..+++.+.++|+.+-..+..+.+|++++|+..++++ +++|+|++||||+.|.|+.....
T Consensus 98 V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~ 177 (254)
T COG1121 98 VLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKE 177 (254)
T ss_pred HHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHH
Confidence 11 234567889999999999999999998888877776 69999999999999999977666
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEEC
Q psy5289 652 MACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 652 i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~~ 698 (813)
+ ..++..++++ |++||++|||++.. ..+|++. .-|.++.+....
T Consensus 178 i-~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi-~Ln~~~~~~G~~ 222 (254)
T COG1121 178 I-YDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVI-CLNRHLIASGPP 222 (254)
T ss_pred H-HHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEE-EEcCeeEeccCh
Confidence 6 6688889885 99999999996554 5667654 446667665544
No 28
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.83 E-value=6e-20 Score=183.60 Aligned_cols=172 Identities=16% Similarity=0.147 Sum_probs=125.3
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh----------------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF---------------------- 577 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~---------------------- 577 (813)
..|++++...-. +.+.|.++++|++.+|++++|+||+|+||||+||+|+++..
T Consensus 7 ~~I~vr~v~~~f-----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~ 81 (263)
T COG1127 7 PLIEVRGVTKSF-----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELY 81 (263)
T ss_pred ceEEEeeeeeec-----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHH
Confidence 456665543222 45789999999999999999999999999999999964321
Q ss_pred --hhhccccc--cCCccchhHHHH----------------------HHHhcCCchh-HhhccchhHHHHHHHHHHHHh-C
Q psy5289 578 --LAQIGCFV--PCDSATISVVDQ----------------------IFTRVGAADS-QYRGISTFMMEMKETATVIKK-C 629 (813)
Q Consensus 578 --laq~g~~v--pa~~~~~~~~d~----------------------i~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~-~ 629 (813)
..++|... -|-...++++++ -+..+|+... ...-.|.+|++|++.+.++++ +
T Consensus 82 ~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAia 161 (263)
T COG1127 82 EIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIA 161 (263)
T ss_pred HHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHh
Confidence 11122100 000001112111 1445677666 667789999999988777766 6
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCCh-HHHhhcCCCCceEeeEEEEEEE
Q psy5289 630 TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFH-EIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 630 ~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~-el~~~~~~~~~v~~~~~~~~~~ 697 (813)
.+|+|+++||||+|+||.....+ ..++..+.+..|.|++++|||. ++..++|++..+.++++.+...
T Consensus 162 ldPell~~DEPtsGLDPI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 162 LDPELLFLDEPTSGLDPISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred cCCCEEEecCCCCCCCcchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCC
Confidence 89999999999999999987766 5566777776899999999995 5667889998899999988765
No 29
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=3.2e-20 Score=182.77 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=122.8
Q ss_pred CceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------------------hhccccccCCcc---c
Q psy5289 537 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------------------AQIGCFVPCDSA---T 591 (813)
Q Consensus 537 ~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----------------------aq~g~~vpa~~~---~ 591 (813)
+..-|.+++++++.+|++++|+||+|||||||||++..+... .++| +|..... .
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG-mVFQ~fnLFPH 91 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG-MVFQQFNLFPH 91 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC-eeccccccccc
Confidence 346789999999999999999999999999999999543211 1122 1211110 1
Q ss_pred hhH----------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q psy5289 592 ISV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 592 ~~~----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d 648 (813)
.++ .-.++.++|+.|......+.+|++++|+..|+++ |.+|.++|+||||+.+||.-
T Consensus 92 lTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPEl 171 (240)
T COG1126 92 LTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL 171 (240)
T ss_pred chHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHH
Confidence 111 1247889999999999999999999988887776 68999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEEEC
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~~~ 698 (813)
...+.. ++..|++ .|.|.+++||++.++. .+|++..+..|.+....++
T Consensus 172 v~EVL~-vm~~LA~-eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p 220 (240)
T COG1126 172 VGEVLD-VMKDLAE-EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPP 220 (240)
T ss_pred HHHHHH-HHHHHHH-cCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCH
Confidence 666644 6677887 6999999999999996 6788887888877655443
No 30
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.83 E-value=3.7e-20 Score=187.74 Aligned_cols=152 Identities=17% Similarity=0.230 Sum_probs=118.7
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------------hhccc------cccCC
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------------AQIGC------FVPCD 588 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------------aq~g~------~vpa~ 588 (813)
.+.++++|++++|++++|+||+||||||||++++++--. .++|+ .+|.-
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~l 98 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDL 98 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCC
Confidence 578999999999999999999999999999999754210 11221 22221
Q ss_pred cc-----------------chhHHHHHHHhcCCchhHh-hccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 589 SA-----------------TISVVDQIFTRVGAADSQY-RGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 589 ~~-----------------~~~~~d~i~~~~~~~d~~~-~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
.+ .......++.++|+.+... ...+.+|++++|+..|+++ +.+|++|+.||||..+|...+
T Consensus 99 tv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~ 178 (226)
T COG1136 99 TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178 (226)
T ss_pred CHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHH
Confidence 11 0112345677788887777 7788999998888777776 699999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQV 692 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~ 692 (813)
..+.. ++..+.++.|.++|+||||.+++..++++..+++|.+
T Consensus 179 ~~V~~-ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 179 KEVLE-LLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHH-HHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence 88855 5666665469999999999999999999988888873
No 31
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=6.4e-20 Score=186.08 Aligned_cols=150 Identities=19% Similarity=0.187 Sum_probs=115.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh-----cc----------ccccCCccc------------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-----IG----------CFVPCDSAT------------ 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-----~g----------~~vpa~~~~------------ 591 (813)
..+..|++|++.+|++++|+||+|||||||||.||++.-... .| .+|.++.+-
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l 95 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVAL 95 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhhee
Confidence 457889999999999999999999999999999986532110 00 112111111
Q ss_pred ------------hhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHH
Q psy5289 592 ------------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIAR 658 (813)
Q Consensus 592 ------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~ 658 (813)
....+..+..+|+.+........+|++|+|...|++. +.+|.+++||||++.+|...+..+-..+++
T Consensus 96 ~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~ 175 (248)
T COG1116 96 GLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLR 175 (248)
T ss_pred hhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHH
Confidence 1235567888999999999999999999998888876 699999999999999999998888666666
Q ss_pred HHHhcCCCEEEEEcCChHHH-hhcCCCCceEe
Q psy5289 659 ELASHRQPFTLFATHFHEIA-LLSRVIPTFRN 689 (813)
Q Consensus 659 ~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~ 689 (813)
-..+ .+.|++++|||.+.+ .++|++..+.+
T Consensus 176 lw~~-~~~TvllVTHdi~EAv~LsdRivvl~~ 206 (248)
T COG1116 176 LWEE-TRKTVLLVTHDVDEAVYLADRVVVLSN 206 (248)
T ss_pred HHHh-hCCEEEEEeCCHHHHHhhhCEEEEecC
Confidence 5554 789999999996555 57777655554
No 32
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.81 E-value=7.9e-20 Score=177.40 Aligned_cols=154 Identities=18% Similarity=0.270 Sum_probs=116.0
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh--------------------cccc-----ccCCc---cch
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ--------------------IGCF-----VPCDS---ATI 592 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq--------------------~g~~-----vpa~~---~~~ 592 (813)
...|++|+..+|++++|.|||||||||+||+||.+....+ +|.. +++.- ..+
T Consensus 17 AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl 96 (245)
T COG4555 17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENL 96 (245)
T ss_pred hhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHH
Confidence 3679999999999999999999999999999986543322 2211 11100 011
Q ss_pred hHH---------------HHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHH
Q psy5289 593 SVV---------------DQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSI 656 (813)
Q Consensus 593 ~~~---------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i 656 (813)
.+| +.+..++++.+.+.+....||.+|++...|+++ ..+|+++++|||++|+|......+ ..+
T Consensus 97 ~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~-~df 175 (245)
T COG4555 97 KYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKF-HDF 175 (245)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHH-HHH
Confidence 111 234456778888888889999999998887776 589999999999999998776655 556
Q ss_pred HHHHHhcCCCEEEEEcCChH-HHhhcCCCCceEeeEEEEEE
Q psy5289 657 ARELASHRQPFTLFATHFHE-IALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 657 ~~~l~~~~~~~~l~~TH~~e-l~~~~~~~~~v~~~~~~~~~ 696 (813)
+.++.+ .|.++||+||.++ +..+||++..+.+|++.+..
T Consensus 176 i~q~k~-egr~viFSSH~m~EvealCDrvivlh~Gevv~~g 215 (245)
T COG4555 176 IKQLKN-EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEG 215 (245)
T ss_pred HHHhhc-CCcEEEEecccHHHHHHhhheEEEEecCcEEEcC
Confidence 777776 6899999999965 55599999888888886544
No 33
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.81 E-value=1.1e-19 Score=195.52 Aligned_cols=157 Identities=21% Similarity=0.268 Sum_probs=120.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hhhccccccCCcc--------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LAQIGCFVPCDSA-------- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------laq~g~~vpa~~~-------- 590 (813)
..+.++++|++.+|++++|+|||||||||+||+++++.. ..++| ++|....
T Consensus 18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig-y~~~~~~~~~~lT~~ 96 (293)
T COG1131 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG-YVPQEPSLYPELTVR 96 (293)
T ss_pred CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE-EEccCCCCCccccHH
Confidence 578999999999999999999999999999999965431 11222 3333211
Q ss_pred ----------------chhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHH
Q psy5289 591 ----------------TISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMA 653 (813)
Q Consensus 591 ----------------~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~ 653 (813)
.-..++.++..+|+.+......++||.+|++...++.. +.+|+|+||||||+|+||.....+
T Consensus 97 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~- 175 (293)
T COG1131 97 ENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI- 175 (293)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHH-
Confidence 01234567888888875556689999999987766654 699999999999999999887776
Q ss_pred HHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 654 CSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 654 ~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
+.++..+.++.+.+||++||.++.+ .++|++..+.+|++.+...
T Consensus 176 ~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~ 220 (293)
T COG1131 176 WELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGT 220 (293)
T ss_pred HHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCC
Confidence 5577777764348999999997555 5688888899999988765
No 34
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=1.8e-19 Score=179.73 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=121.0
Q ss_pred CceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh-----------------hhhccccccCCcc---chhHH-
Q psy5289 537 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-----------------LAQIGCFVPCDSA---TISVV- 595 (813)
Q Consensus 537 ~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~-----------------laq~g~~vpa~~~---~~~~~- 595 (813)
+...+.++++|+..+|++.+++|||||||||.+|+|..+.- ...+ .|.|.+.. .+.+.
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rI-GyLPEERGLy~k~tv~d 91 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRI-GYLPEERGLYPKMTVED 91 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhc-ccChhhhccCccCcHHH
Confidence 34568899999999999999999999999999999954421 1123 35665543 23332
Q ss_pred --------------------HHHHHhcCCchhHhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHH
Q psy5289 596 --------------------DQIFTRVGAADSQYRGISTFMMEMKETATVI-KKCTENSLVIIDELGRGTSTFDGFGMAC 654 (813)
Q Consensus 596 --------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~~~~~~LlllDEp~~Gtd~~d~~~i~~ 654 (813)
+.++.|+.+.....+.+.++|.+++|....+ ..+.+|.|+|||||++|+||.....+-.
T Consensus 92 ql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~ 171 (300)
T COG4152 92 QLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKD 171 (300)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHH
Confidence 3456777777777788889999988865544 4579999999999999999999888866
Q ss_pred HHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 655 SIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 655 ~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
+|.+ +++ .|+|+||+||.++-+ ++||++--++.|.....++
T Consensus 172 ~I~~-lk~-~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~ 213 (300)
T COG4152 172 AIFE-LKE-EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGT 213 (300)
T ss_pred HHHH-HHh-cCCEEEEecchHHHHHHHhhhhheecCCceEEecc
Confidence 6665 565 699999999998665 5889887777777766554
No 35
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.79 E-value=7.7e-19 Score=176.15 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=115.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhcccc------ccC----C-ccchhHHHHHHHhcCCchh
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCF------VPC----D-SATISVVDQIFTRVGAADS 607 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~------vpa----~-~~~~~~~d~i~~~~~~~d~ 607 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... ..|.. +.. . ...++++.+++..+|+.+.
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~ 90 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHL 90 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhH
Confidence 3577899999999999999999999999999999775432 22311 110 0 1134555557888898887
Q ss_pred HhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCC
Q psy5289 608 QYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIP 685 (813)
Q Consensus 608 ~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~ 685 (813)
+......+|+++++...+++ .+.+|+++|||||++|+|+.....+.. ++..+.++.++++|++||+.+.. .+++++.
T Consensus 91 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~-~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~ 169 (180)
T cd03214 91 ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE-LLRRLARERGKTVVMVLHDLNLAARYADRVI 169 (180)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 77778889988887666655 468999999999999999987776654 55555542378999999998775 7888877
Q ss_pred ceEeeEEE
Q psy5289 686 TFRNVQVS 693 (813)
Q Consensus 686 ~v~~~~~~ 693 (813)
.+.+|++.
T Consensus 170 ~l~~g~i~ 177 (180)
T cd03214 170 LLKDGRIV 177 (180)
T ss_pred EEECCEEE
Confidence 77777664
No 36
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.78 E-value=1.3e-18 Score=190.92 Aligned_cols=159 Identities=21% Similarity=0.167 Sum_probs=118.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhccccccCCcc---chhH--
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQIGCFVPCDSA---TISV-- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~g~~vpa~~~---~~~~-- 594 (813)
..+.++++|++++|++++|+||||||||||||+++++... .+.-.++|.... .+++
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e 133 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRE 133 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHH
Confidence 4689999999999999999999999999999999654210 011123333211 1111
Q ss_pred -------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHH
Q psy5289 595 -------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMAC 654 (813)
Q Consensus 595 -------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~ 654 (813)
.+.++.++++.+.......++|++|++...+++. +.+|+++|||||++|+|+.....+ +
T Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l-~ 212 (340)
T PRK13536 134 NLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI-W 212 (340)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-H
Confidence 1234556677666677788999999987776664 689999999999999999887777 5
Q ss_pred HHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEECC
Q psy5289 655 SIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQED 699 (813)
Q Consensus 655 ~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~~~ 699 (813)
.++..+.+ .|.++|++||+++.. .+++++..+.+|++.+..+.+
T Consensus 213 ~~l~~l~~-~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~ 257 (340)
T PRK13536 213 ERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPH 257 (340)
T ss_pred HHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 55666665 589999999997665 689999889999988766543
No 37
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.78 E-value=1.2e-18 Score=189.06 Aligned_cols=171 Identities=19% Similarity=0.204 Sum_probs=124.0
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------h
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------A 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------a 579 (813)
..+.+++....+ +...+.++++|++.+|++++|+||||||||||+|+++++... .
T Consensus 6 ~~i~i~~l~k~~-----~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~ 80 (306)
T PRK13537 6 APIDFRNVEKRY-----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQ 80 (306)
T ss_pred ceEEEEeEEEEE-----CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHh
Confidence 346666554332 224688999999999999999999999999999999654211 1
Q ss_pred hccccccCCcc---chhH---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcE
Q psy5289 580 QIGCFVPCDSA---TISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSL 634 (813)
Q Consensus 580 q~g~~vpa~~~---~~~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~L 634 (813)
++| ++|.... .+++ .+.++..+++.+......+++|++|++...+++. +.+|++
T Consensus 81 ~ig-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~l 159 (306)
T PRK13537 81 RVG-VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV 159 (306)
T ss_pred cEE-EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCE
Confidence 122 3443321 1111 1234556666666667778999999887666655 689999
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEEC
Q psy5289 635 VIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 635 lllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~~ 698 (813)
+|||||++|+|+.....+ +.++..+.+ .|.++|++||+++.+ .+++++..+.+|++.+..+.
T Consensus 160 llLDEPt~gLD~~~~~~l-~~~l~~l~~-~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~ 222 (306)
T PRK13537 160 LVLDEPTTGLDPQARHLM-WERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAP 222 (306)
T ss_pred EEEeCCCcCCCHHHHHHH-HHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999887776 556666765 589999999997655 68999888999998776543
No 38
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2.2e-18 Score=178.55 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=111.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh---------------hccccccCCcc---chhH------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA---------------QIGCFVPCDSA---TISV------ 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la---------------q~g~~vpa~~~---~~~~------ 594 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.... +.-.++|.... ..++
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 96 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL 96 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHH
Confidence 35788999999999999999999999999999997653110 01123333211 0111
Q ss_pred ---------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHH
Q psy5289 595 ---------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIAR 658 (813)
Q Consensus 595 ---------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~ 658 (813)
+..++.++++.+.+....+.+|+++++...+++. +.+|+++|||||++|+|+.....+.. ++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~-~l~ 175 (220)
T cd03293 97 GLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQE-ELL 175 (220)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHH-HHH
Confidence 2234566677666666778899888877666655 68999999999999999988777755 444
Q ss_pred HHHhcCCCEEEEEcCChHH-HhhcCCCCceE--eeEEEEEE
Q psy5289 659 ELASHRQPFTLFATHFHEI-ALLSRVIPTFR--NVQVSALE 696 (813)
Q Consensus 659 ~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~--~~~~~~~~ 696 (813)
.+.++.+.++|++||+.+. ..+++++..+. +|++....
T Consensus 176 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~ 216 (220)
T cd03293 176 DIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEV 216 (220)
T ss_pred HHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEE
Confidence 4543258899999999864 56788877777 57775543
No 39
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.77 E-value=2e-18 Score=187.39 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=116.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc---chh--
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA---TIS-- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~---~~~-- 593 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .++| ++|.... .++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIG-IVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcE-EecCCCCCCCCCcHH
Confidence 3577899999999999999999999999999999654210 1122 3333211 011
Q ss_pred -------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHH
Q psy5289 594 -------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMA 653 (813)
Q Consensus 594 -------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~ 653 (813)
.++.++..+++.+......+++|++|++...+++. +.+|+++|||||++|+|+.....+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l- 163 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI- 163 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-
Confidence 12345667777766777788999999887666654 689999999999999999877766
Q ss_pred HHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 654 CSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 654 ~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
+.++..+.+ .|.++|++||+.+.. .+++++..+.+|++....+
T Consensus 164 ~~~l~~~~~-~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~ 207 (302)
T TIGR01188 164 WDYIRALKE-EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGT 207 (302)
T ss_pred HHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 456666665 489999999997655 5889888888998876544
No 40
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.2e-18 Score=173.80 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=125.2
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh------------------------hhhhccc------cccC
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV------------------------FLAQIGC------FVPC 587 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~------------------------~laq~g~------~vpa 587 (813)
+..+..+|+|++++|++++|+||+|||||||||++..++ +.+++|+ .||-
T Consensus 16 ~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r 95 (258)
T COG3638 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPR 95 (258)
T ss_pred CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccc
Confidence 467888999999999999999999999999999996432 1234443 2222
Q ss_pred Cc----------cchhHHH---------------HHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q psy5289 588 DS----------ATISVVD---------------QIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELG 641 (813)
Q Consensus 588 ~~----------~~~~~~d---------------~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~ 641 (813)
.+ +..+.+. ..++|+|..+......+++|++.+|+..|++. +.+|.++|.|||.
T Consensus 96 ~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPv 175 (258)
T COG3638 96 LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPV 175 (258)
T ss_pred cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcc
Confidence 11 0111111 24788999999999999999999888887776 5899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEEEC
Q psy5289 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 642 ~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~~~ 698 (813)
+++||.....+.. ++..+.++.|.|+|+.-|+.+++. +++++..+++|++.+....
T Consensus 176 asLDp~~a~~Vm~-~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 176 ASLDPESAKKVMD-ILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred cccChhhHHHHHH-HHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 9999998888755 566676668999999999999986 8899999999888765543
No 41
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.9e-18 Score=179.05 Aligned_cols=156 Identities=18% Similarity=0.161 Sum_probs=112.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhccccccCCcc---chh---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQIGCFVPCDSA---TIS--- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~g~~vpa~~~---~~~--- 593 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..+
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWE 92 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHH
Confidence 4578899999999999999999999999999999764210 001123333211 011
Q ss_pred ------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q psy5289 594 ------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMAC 654 (813)
Q Consensus 594 ------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~ 654 (813)
.++.++.++++.+......+.+|+++++...+++ .+.+|+++|+|||++|+|+.....+..
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 172 (220)
T cd03265 93 NLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE 172 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence 1233556677766666777888988887666555 468999999999999999987776644
Q ss_pred HHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 655 SIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 655 ~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
++..+.++.|.++|++||+.+.. .+++++..+.+|++...
T Consensus 173 -~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 173 -YIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred -HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 55555543488999999997665 57888877888877543
No 42
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.77 E-value=1.8e-18 Score=177.23 Aligned_cols=151 Identities=18% Similarity=0.118 Sum_probs=109.5
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------hhccccccCCcc----chh-----
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------AQIGCFVPCDSA----TIS----- 593 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------aq~g~~vpa~~~----~~~----- 593 (813)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.++|.... ..+
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l 93 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREEL 93 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHH
Confidence 467899999999999999999999999999999754210 001123333310 111
Q ss_pred ------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q psy5289 594 ------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIAREL 660 (813)
Q Consensus 594 ------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l 660 (813)
.+..++.++++.+........+|+++++...+++. +.+|+++|||||++|+|+.....+.. ++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 172 (205)
T cd03226 94 LLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE-LIREL 172 (205)
T ss_pred hhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 12345666777666666778889888887666654 68999999999999999987777644 55556
Q ss_pred HhcCCCEEEEEcCChHHH-hhcCCCCceEeeEE
Q psy5289 661 ASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQV 692 (813)
Q Consensus 661 ~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~ 692 (813)
.+ .|.++|++||+.+.. .+++++..+.+|++
T Consensus 173 ~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 173 AA-QGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred HH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 55 488999999998765 47887777777654
No 43
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.77 E-value=4.2e-18 Score=184.94 Aligned_cols=156 Identities=22% Similarity=0.199 Sum_probs=115.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc---chhH-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA---TISV- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~---~~~~- 594 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .++ .++|.... ..++
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i-~~v~q~~~~~~~~tv~ 95 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI-GVVPQFDNLDPEFTVR 95 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE-EEEeccccCCcCCcHH
Confidence 4588999999999999999999999999999999654210 112 23333211 1111
Q ss_pred --------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHH
Q psy5289 595 --------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMA 653 (813)
Q Consensus 595 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~ 653 (813)
++.++..+++.+......+++|++|++...+++. +.+|+++|||||++|+|+.....+.
T Consensus 96 e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 175 (303)
T TIGR01288 96 ENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 175 (303)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 1234555666666666778899998887766665 6899999999999999998877764
Q ss_pred HHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 654 CSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 654 ~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
.++..+.+ .|.++|++||+.+.. .+++++..+.+|++....+
T Consensus 176 -~~l~~~~~-~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 218 (303)
T TIGR01288 176 -ERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGR 218 (303)
T ss_pred -HHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 45555665 589999999997765 5889888888988876544
No 44
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.77 E-value=2.1e-18 Score=178.48 Aligned_cols=152 Identities=18% Similarity=0.188 Sum_probs=107.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------hhccccccCCcc---c
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------AQIGCFVPCDSA---T 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------aq~g~~vpa~~~---~ 591 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... .
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 3577899999999999999999999999999999654210 011122332210 0
Q ss_pred hh---------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 592 IS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 592 ~~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
.+ .++.++..+|+.+.......++|+++++...+++. +.+|+++|||||++|+|+...
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176 (218)
T ss_pred CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence 01 12345566777666666778899888887666654 689999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQ 691 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~ 691 (813)
..+.. ++..+.++.|.++|++||+.+...+++++..+.+|+
T Consensus 177 ~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~ 217 (218)
T cd03255 177 KEVME-LLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGK 217 (218)
T ss_pred HHHHH-HHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCc
Confidence 76644 555555424889999999987777777766565553
No 45
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.76 E-value=2.1e-18 Score=171.34 Aligned_cols=149 Identities=18% Similarity=0.119 Sum_probs=103.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCcc-chhHH--HHHHHhcCCch-hHhhccch
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSA-TISVV--DQIFTRVGAAD-SQYRGIST 614 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~-~~~~~--d~i~~~~~~~d-~~~~~~s~ 614 (813)
.++.++++|++.+|++++|+||||||||||||++..-.--..++...+.... .+.++ .+.+.++++.+ .+.....+
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~ 87 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLST 87 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCc
Confidence 4678899999999999999999999999999987310000001111111000 01111 34677888765 36667788
Q ss_pred hHHHHHHHHHHHHh-CCC--CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEe
Q psy5289 615 FMMEMKETATVIKK-CTE--NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRN 689 (813)
Q Consensus 615 f~~e~~~~~~il~~-~~~--~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~ 689 (813)
+++++++...+++. +.+ |+++|+|||++|+|+.....+.. .+..+.+ .|.++|++||+.+....++++..+.+
T Consensus 88 LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~-~l~~~~~-~g~tvIivSH~~~~~~~~d~i~~l~~ 163 (176)
T cd03238 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLID-LGNTVILIEHNLDVLSSADWIIDFGP 163 (176)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHh-CCCEEEEEeCCHHHHHhCCEEEEECC
Confidence 99888877666655 577 99999999999999988777755 4444554 58999999999888777776544433
No 46
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.76 E-value=4.4e-18 Score=180.10 Aligned_cols=155 Identities=16% Similarity=0.106 Sum_probs=112.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh---------------hccccccCCccc---hh-------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA---------------QIGCFVPCDSAT---IS------- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la---------------q~g~~vpa~~~~---~~------- 593 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.... +.-.++|....- .+
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 104 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGL 104 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHh
Confidence 45788999999999999999999999999999997542110 001133322110 01
Q ss_pred --------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcC
Q psy5289 594 --------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHR 664 (813)
Q Consensus 594 --------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~ 664 (813)
.+..++..+++.+......+.+|+++++...+++. +.+|+++|||||++|+|+.....+.. ++..+.++.
T Consensus 105 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~ 183 (257)
T PRK11247 105 GLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQD-LIESLWQQH 183 (257)
T ss_pred cccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHHc
Confidence 12345667777777777788999988887666655 68999999999999999987776655 444454335
Q ss_pred CCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 665 QPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 665 ~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
+.++|++||+.+.. .+++++..+.+|++..
T Consensus 184 ~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 184 GFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 88999999998764 6788877777777654
No 47
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=4e-18 Score=175.72 Aligned_cols=154 Identities=19% Similarity=0.139 Sum_probs=110.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh------------------hccccccCCcc---chhH---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA------------------QIGCFVPCDSA---TISV--- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la------------------q~g~~vpa~~~---~~~~--- 594 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.... +.-.++|.... ..++
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 92 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAEN 92 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHH
Confidence 35788999999999999999999999999999997542110 01123333211 0111
Q ss_pred ------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHH
Q psy5289 595 ------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACS 655 (813)
Q Consensus 595 ------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~ 655 (813)
+..++..+++.+......+.+|+++++...+++. +.+|+++|||||++|+|+.....+..
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~- 171 (213)
T cd03259 93 IAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELRE- 171 (213)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-
Confidence 1234556666666666677888888887666665 68999999999999999988777654
Q ss_pred HHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEE
Q psy5289 656 IARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVS 693 (813)
Q Consensus 656 i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~ 693 (813)
++..+.++.|.++|++||+.+. ..+++++..+.+|++.
T Consensus 172 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 210 (213)
T cd03259 172 ELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210 (213)
T ss_pred HHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 4555554248899999999765 5678887777777764
No 48
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.76 E-value=2.8e-18 Score=177.32 Aligned_cols=150 Identities=15% Similarity=0.092 Sum_probs=107.5
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------------hhccccccCCcc---chh
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------------AQIGCFVPCDSA---TIS 593 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------------aq~g~~vpa~~~---~~~ 593 (813)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..+
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRT 96 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccccc
Confidence 578899999999999999999999999999999654210 011123333211 011
Q ss_pred H---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q psy5289 594 V---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFG 651 (813)
Q Consensus 594 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~ 651 (813)
+ +..++..+|+.+.......++|+++++...+++. +.+|+++|||||++|+|+.....
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 176 (216)
T TIGR00960 97 VYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRD 176 (216)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHH
Confidence 1 1234556677666666778888888877666654 68999999999999999988777
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeE
Q psy5289 652 MACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQ 691 (813)
Q Consensus 652 i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~ 691 (813)
+.. ++..+.+ .|.++|++||+.+.. .+++++..+.+|+
T Consensus 177 l~~-~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 177 IMR-LFEEFNR-RGTTVLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred HHH-HHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 755 5555655 488999999998766 4778766665553
No 49
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.76 E-value=4.2e-18 Score=174.88 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=111.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------hhccccccCCcc---chh----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------AQIGCFVPCDSA---TIS---- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------aq~g~~vpa~~~---~~~---- 593 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..+
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 92 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAREN 92 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHH
Confidence 4578899999999999999999999999999999754210 011123443321 111
Q ss_pred -------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q psy5289 594 -------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARE 659 (813)
Q Consensus 594 -------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~ 659 (813)
.++.++.++++.+........+|+++++...+++. +.+|+++|||||++|+|+.....+. .++..
T Consensus 93 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~ 171 (208)
T cd03268 93 LRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELR-ELILS 171 (208)
T ss_pred HHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH-HHHHH
Confidence 12335566677666667777888888876655554 6899999999999999998777664 45556
Q ss_pred HHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEE
Q psy5289 660 LASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 660 l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~ 693 (813)
+.+ .|.++|++||+.+.. .+++++..+.+|++.
T Consensus 172 ~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 172 LRD-QGITVLISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred HHH-CCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 665 588999999998766 578887777777764
No 50
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=5.8e-18 Score=174.12 Aligned_cols=153 Identities=19% Similarity=0.224 Sum_probs=108.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----------------hccccccCCcc---chhH-----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----------------QIGCFVPCDSA---TISV----- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----------------q~g~~vpa~~~---~~~~----- 594 (813)
..+.++++|++.+|++++|+||||||||||||+++++.... ..-.++|.... ..++
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 92 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLV 92 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHH
Confidence 45788999999999999999999999999999997653110 00123332211 0111
Q ss_pred ----------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q psy5289 595 ----------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIA 657 (813)
Q Consensus 595 ----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~ 657 (813)
+..++..+++.+........+|+++++...+++ .+.+|+++|||||++|+|+.....+.. ++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~-~l 171 (210)
T cd03269 93 YLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKD-VI 171 (210)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH-HH
Confidence 223455566665556666788888887665555 468999999999999999987777655 55
Q ss_pred HHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEE
Q psy5289 658 RELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 658 ~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~ 693 (813)
+.+.+ .++++|++||+.+.. .+++++..+.+|++.
T Consensus 172 ~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 172 RELAR-AGKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred HHHHH-CCCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 55555 488999999997765 578877777777664
No 51
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.76 E-value=6.1e-18 Score=174.35 Aligned_cols=153 Identities=15% Similarity=0.113 Sum_probs=109.9
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh------------------hccccccCCcc---chh-----
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA------------------QIGCFVPCDSA---TIS----- 593 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la------------------q~g~~vpa~~~---~~~----- 593 (813)
.+.++++|++.+|++++|+||||||||||+|+++++.... ..-.++|.... ..+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 93 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI 93 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHH
Confidence 4678999999999999999999999999999997652110 00123332211 011
Q ss_pred ----------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHH
Q psy5289 594 ----------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSI 656 (813)
Q Consensus 594 ----------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i 656 (813)
.++.++.++|+.+.......++|+++++...+++. +.+|+++|||||++|+|+.....+.. +
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~-~ 172 (213)
T cd03301 94 AFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA-E 172 (213)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-H
Confidence 12334566777666677778899888887666554 68999999999999999988777655 5
Q ss_pred HHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEE
Q psy5289 657 ARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVS 693 (813)
Q Consensus 657 ~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~ 693 (813)
+..+.++.|+++|++||+.+. ..+++++..+.+|++.
T Consensus 173 l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 173 LKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 555554348999999999765 4578877777777664
No 52
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=1.1e-18 Score=169.33 Aligned_cols=163 Identities=17% Similarity=0.191 Sum_probs=121.0
Q ss_pred CceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hhhcc-ccccCCcc---ch
Q psy5289 537 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LAQIG-CFVPCDSA---TI 592 (813)
Q Consensus 537 ~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------laq~g-~~vpa~~~---~~ 592 (813)
+.+.|.|+++|++.+|+++++.|||||||||.+.+|.+++. -|+.| .|+|++.. .+
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~L 94 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKL 94 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcC
Confidence 34789999999999999999999999999999999854421 24555 35665532 23
Q ss_pred hHHHH-----------------------HHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q psy5289 593 SVVDQ-----------------------IFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 593 ~~~d~-----------------------i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d 648 (813)
++.+. ++..++...-....-.++|++.++...|++. +.+|++++||||++|.||..
T Consensus 95 tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPia 174 (243)
T COG1137 95 TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174 (243)
T ss_pred cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchh
Confidence 33333 3333333333333445666666665555554 68999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCC-hHHHhhcCCCCceEeeEEEEEEECCeE
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHF-HEIALLSRVIPTFRNVQVSALEQEDNL 701 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~-~el~~~~~~~~~v~~~~~~~~~~~~~i 701 (813)
...| +.++.+|.+ .|..+|++-|+ .|...++|+...+..|++.++++++++
T Consensus 175 V~dI-q~iI~~L~~-rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 175 VIDI-QRIIKHLKD-RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred HHHH-HHHHHHHHh-CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHH
Confidence 8887 668999998 69999999999 577789999888999999887765443
No 53
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=6.7e-18 Score=176.77 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=110.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------------hhccccccCCcc---ch
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------------AQIGCFVPCDSA---TI 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------------aq~g~~vpa~~~---~~ 592 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSL 92 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCC
Confidence 3578899999999999999999999999999999654210 011123333211 11
Q ss_pred hH----------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 593 SV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 593 ~~----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
++ +..++.++++.+......+.+|+++++...+++. +.+|+++|||||++|+|+...
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 172 (235)
T cd03261 93 TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172 (235)
T ss_pred cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence 11 1234555666666666678899888887666654 689999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
..+.. ++..+.++.|.++|++||+.+.. .+++++..+.+|++...
T Consensus 173 ~~l~~-~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~ 218 (235)
T cd03261 173 GVIDD-LIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAE 218 (235)
T ss_pred HHHHH-HHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEe
Confidence 76644 45555542488999999998755 57888777777776543
No 54
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.75 E-value=4.4e-18 Score=179.11 Aligned_cols=154 Identities=15% Similarity=0.166 Sum_probs=108.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------------hhccccccCCcc---ch
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------------AQIGCFVPCDSA---TI 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------------aq~g~~vpa~~~---~~ 592 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.++|.... ..
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERL 94 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccc
Confidence 3578899999999999999999999999999999654210 011123333211 01
Q ss_pred hH-----------------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q psy5289 593 SV-----------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGR 642 (813)
Q Consensus 593 ~~-----------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~ 642 (813)
++ +..++..+++.+........+|+++++...+++. +.+|+++|||||++
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 174 (243)
T TIGR02315 95 TVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIA 174 (243)
T ss_pred cHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 11 1234555666666666778888888877666655 68999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~ 693 (813)
|+|+.....+.. +++.+.++.|+++|++||+.+.. .+++++..+.+|++.
T Consensus 175 ~LD~~~~~~l~~-~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 175 SLDPKTSKQVMD-YLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225 (243)
T ss_pred cCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 999987766644 55555443488999999998765 578877666666554
No 55
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.75 E-value=6.8e-18 Score=175.02 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=108.6
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------------h-hccccccCCcc---ch
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------------A-QIGCFVPCDSA---TI 592 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------------a-q~g~~vpa~~~---~~ 592 (813)
.+.++++|++.+|++++|+||||||||||||+++++... . +.-.++|.... ..
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF 98 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence 578899999999999999999999999999999654210 0 11123333211 01
Q ss_pred hH---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 593 SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 593 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
++ +..++..+|+.+.+.....++|+++++...+++. +.+|+++|||||++|+|+....
T Consensus 99 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~ 178 (221)
T TIGR02211 99 TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178 (221)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHH
Confidence 11 2235566677666667778899888887666664 6899999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQV 692 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~ 692 (813)
.+.. ++..+.++.+.++|++||+.+....++++..+.+|.+
T Consensus 179 ~l~~-~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i 219 (221)
T TIGR02211 179 IIFD-LMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQL 219 (221)
T ss_pred HHHH-HHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEe
Confidence 7754 5555554347899999999887776676655666554
No 56
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.75 E-value=3.8e-18 Score=171.39 Aligned_cols=161 Identities=20% Similarity=0.241 Sum_probs=119.7
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh---------------------------h-hhhcccc-----
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV---------------------------F-LAQIGCF----- 584 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~---------------------------~-laq~g~~----- 584 (813)
...+.++++|++++|++++++||+||||||+||+|..++ + .-|+|.|
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv 92 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTV 92 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccH
Confidence 356788999999999999999999999999999985321 1 1234433
Q ss_pred ------ccCCcc----c-hhHHHHHHHhcCCc--hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 585 ------VPCDSA----T-ISVVDQIFTRVGAA--DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 585 ------vpa~~~----~-~~~~d~i~~~~~~~--d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
||.-.. + -...+.++..+|+. +...+..+.+|++.+|..-++++ |.+|.++|||||++.+||..+.
T Consensus 93 ~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~ 172 (309)
T COG1125 93 AENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRK 172 (309)
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHH
Confidence 221110 0 01245677888875 45677788999888887666665 6899999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEECC
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQED 699 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~~~ 699 (813)
.+-. -+..++++.|.|++|+|||++.+ .+++++..++.|++.-...++
T Consensus 173 ~lQ~-e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~ 221 (309)
T COG1125 173 QLQE-EIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPD 221 (309)
T ss_pred HHHH-HHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHH
Confidence 8855 44456666899999999997555 688988878888776544433
No 57
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.75 E-value=3.9e-18 Score=178.66 Aligned_cols=155 Identities=20% Similarity=0.187 Sum_probs=110.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------------hhccccccCCcc---chh-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------------------AQIGCFVPCDSA---TIS- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------------------aq~g~~vpa~~~---~~~- 593 (813)
..+.++++|++.+|++++|+||||||||||||+++++... ...-.++|.... ..+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTV 92 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCH
Confidence 3578899999999999999999999999999999754210 000123333211 011
Q ss_pred ------------------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q psy5289 594 ------------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGR 642 (813)
Q Consensus 594 ------------------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~ 642 (813)
.+..++..+|+.+......+++|+++++...+++. +.+|+++|||||++
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 172 (236)
T cd03219 93 LENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAA 172 (236)
T ss_pred HHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 12234455666655666677888888877666554 68999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
|+|+.....+.. ++..+.+ .|.++|++||+.+.. .+++++..+.+|++...
T Consensus 173 ~LD~~~~~~l~~-~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 173 GLNPEETEELAE-LIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred cCCHHHHHHHHH-HHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEee
Confidence 999987776644 5555665 588999999998766 57888877888777543
No 58
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.75 E-value=9.3e-18 Score=175.34 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=110.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------h-hccccccCCcc---chhH
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------A-QIGCFVPCDSA---TISV 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------a-q~g~~vpa~~~---~~~~ 594 (813)
..+.++++|++.+|++++|+||||||||||||+++++... . ..-.++|.... ..++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTV 92 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcH
Confidence 3578899999999999999999999999999999754210 0 00113332211 0111
Q ss_pred ---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHH
Q psy5289 595 ---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGM 652 (813)
Q Consensus 595 ---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i 652 (813)
++.++..++..+........+|+++++...+++. +.+|+++|||||++|+|+.....+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~ 172 (232)
T cd03218 93 EENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI 172 (232)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 1234555666666666677888888876665554 689999999999999999877766
Q ss_pred HHHHHHHHHhcCCCEEEEEcCChH-HHhhcCCCCceEeeEEEE
Q psy5289 653 ACSIARELASHRQPFTLFATHFHE-IALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 653 ~~~i~~~l~~~~~~~~l~~TH~~e-l~~~~~~~~~v~~~~~~~ 694 (813)
.. +++.+.+ .+.++|++||+.+ +..+++++..+.+|++..
T Consensus 173 ~~-~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 213 (232)
T cd03218 173 QK-IIKILKD-RGIGVLITDHNVRETLSITDRAYIIYEGKVLA 213 (232)
T ss_pred HH-HHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 44 5556665 5889999999975 566888887777777654
No 59
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.75 E-value=8.4e-18 Score=175.22 Aligned_cols=153 Identities=14% Similarity=0.042 Sum_probs=109.5
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------hhccccccCCcc---ch
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------AQIGCFVPCDSA---TI 592 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------aq~g~~vpa~~~---~~ 592 (813)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 478899999999999999999999999999999754210 011123333211 11
Q ss_pred hH---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 593 SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 593 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
++ +..++..+++.+.+......+|+++++...+++. +.+|+++|||||++|+|+....
T Consensus 104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 183 (228)
T PRK10584 104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183 (228)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 11 1234556666666666777888888877666654 6899999999999999998777
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
.+.. ++..+.++.|.++|++||+.+....++++..+.+|++.
T Consensus 184 ~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 184 KIAD-LLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQ 225 (228)
T ss_pred HHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 6644 55555543488999999998877777777667777663
No 60
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.75 E-value=6.8e-18 Score=185.06 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=118.2
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------hhccccccCCccc---h
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------AQIGCFVPCDSAT---I 592 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------aq~g~~vpa~~~~---~ 592 (813)
.+.++++|++.+|++++|+||||||||||+|+|+++... ..+| ++|....- .
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig-~v~Q~~~l~~~~ 97 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIG-MIFQHFNLLSSR 97 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEE-EEECCccccccC
Confidence 578899999999999999999999999999999654210 0122 23322110 0
Q ss_pred h---------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 593 S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 593 ~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
+ .+..++.++|+.+......+.+|++++|...++++ +++|+++|+||||+|+|+....
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~ 177 (343)
T TIGR02314 98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 1 12345677888877788889999999887776665 6899999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
.+ ..++..+.++.|.++|++||+++.. ++++++..+.+|++.....
T Consensus 178 ~i-~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~ 224 (343)
T TIGR02314 178 SI-LELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGT 224 (343)
T ss_pred HH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 77 4466666654589999999998876 6789888888888875543
No 61
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=9.3e-18 Score=175.47 Aligned_cols=155 Identities=15% Similarity=0.092 Sum_probs=111.2
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------------hhccccccCCcc---chh
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------------AQIGCFVPCDSA---TIS 593 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------------aq~g~~vpa~~~---~~~ 593 (813)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..+
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 577899999999999999999999999999999654210 011123333211 111
Q ss_pred H---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q psy5289 594 V---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFG 651 (813)
Q Consensus 594 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~ 651 (813)
+ +..++.++++.+......+++|+++++...+++ .+.+|+++|||||++|+|+.....
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~ 178 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS 178 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHH
Confidence 1 223455667666666677888988877666555 468999999999999999987776
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 652 MACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 652 i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
+.. ++..+.++.|.++|++||+.+.. .+++++..+.+|++...
T Consensus 179 l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 179 ILA-LLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred HHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 644 45455542488999999998765 57888877888877543
No 62
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.75 E-value=6.2e-18 Score=170.19 Aligned_cols=157 Identities=17% Similarity=0.192 Sum_probs=110.0
Q ss_pred CceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh----------------------hhhccc-----------
Q psy5289 537 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF----------------------LAQIGC----------- 583 (813)
Q Consensus 537 ~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~----------------------laq~g~----------- 583 (813)
+++.|..++++.+++|+-++|+|||||||||||+.++.--. -..+|.
T Consensus 42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~ 121 (257)
T COG1119 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRV 121 (257)
T ss_pred CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccc
Confidence 45789999999999999999999999999999999853210 111221
Q ss_pred ------------------cc-cCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q psy5289 584 ------------------FV-PCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRG 643 (813)
Q Consensus 584 ------------------~v-pa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~G 643 (813)
+- +.+.........++..+|+.+-..+...++|.+++++..|.++ +.+|.|+|||||+.|
T Consensus 122 ~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~G 201 (257)
T COG1119 122 RETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201 (257)
T ss_pred ccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcccc
Confidence 11 1111112223456778888887788889999999998888887 489999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEE
Q psy5289 644 TSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 644 td~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~ 693 (813)
+|......+...+.+......+.++|++||+.|.+ .-.++.-.+++|++.
T Consensus 202 LDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~ 252 (257)
T COG1119 202 LDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252 (257)
T ss_pred CChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCcee
Confidence 99988767655444433333477899999996543 233333334444443
No 63
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.1e-17 Score=174.99 Aligned_cols=153 Identities=17% Similarity=0.139 Sum_probs=106.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------hhccccccCCcc---c
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------AQIGCFVPCDSA---T 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------aq~g~~vpa~~~---~ 591 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... .
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD 101 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence 3588899999999999999999999999999999754210 011123333211 0
Q ss_pred hhH---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q psy5289 592 ISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 592 ~~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~ 649 (813)
.++ +..++.++|+.+........+|+++++...+++ .+.+|+++|||||++|+|+...
T Consensus 102 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 181 (233)
T PRK11629 102 FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181 (233)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 011 223556667766666667788888887766665 4689999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQV 692 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~ 692 (813)
..+. .++..+.+..|.++|++||+.+....++++..+.+|++
T Consensus 182 ~~l~-~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i 223 (233)
T PRK11629 182 DSIF-QLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRL 223 (233)
T ss_pred HHHH-HHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEE
Confidence 6664 45555554348999999999887765554433444443
No 64
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=6.1e-18 Score=177.56 Aligned_cols=156 Identities=17% Similarity=0.109 Sum_probs=110.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh------------------hccccccCCcc---chhH---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA------------------QIGCFVPCDSA---TISV--- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la------------------q~g~~vpa~~~---~~~~--- 594 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.... +.-.++|.... ..++
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 94 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDN 94 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHH
Confidence 45788999999999999999999999999999997652110 00112332210 0111
Q ss_pred ----------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q psy5289 595 ----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFG 651 (813)
Q Consensus 595 ----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~ 651 (813)
+..++.++++.+.......++|+++++...+++. +.+|+++|||||++|+|+.....
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~ 174 (239)
T cd03296 95 VAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE 174 (239)
T ss_pred HhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 1234556666655666677888888887666664 68999999999999999987776
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEEE
Q psy5289 652 MACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 652 i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~~ 695 (813)
+.. ++..+.++.|+++|++||+.+. ..+++++..+.+|++...
T Consensus 175 l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (239)
T cd03296 175 LRR-WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218 (239)
T ss_pred HHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 644 5555554348899999999765 567888777777776543
No 65
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=5.8e-18 Score=177.91 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=109.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------------hhccccccCCcc---ch
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------------AQIGCFVPCDSA---TI 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------------aq~g~~vpa~~~---~~ 592 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL 93 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence 3578899999999999999999999999999999654210 011123333211 01
Q ss_pred hH-----------------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q psy5289 593 SV-----------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGR 642 (813)
Q Consensus 593 ~~-----------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~ 642 (813)
++ +..++..+++.+.......++|+++++...+++ .+.+|+++|||||++
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 173 (241)
T cd03256 94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA 173 (241)
T ss_pred cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 11 122345566655555666788888887766665 468999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSA 694 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~ 694 (813)
|+|+.....+.. ++..+.++.|.++|++||+.+... +++++..+.+|++..
T Consensus 174 ~LD~~~~~~l~~-~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 174 SLDPASSRQVMD-LLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF 225 (241)
T ss_pred cCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999987776644 555565434889999999987765 788877777776643
No 66
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.75 E-value=6.7e-18 Score=174.19 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=105.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------------hhccccccCCcc---ch
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------------AQIGCFVPCDSA---TI 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------------aq~g~~vpa~~~---~~ 592 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR 94 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCC
Confidence 3578899999999999999999999999999999654210 011123333211 01
Q ss_pred hH---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 593 SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 593 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
++ +..++..+++.+........+|+++++...+++. +.+|+++|||||++|+|+....
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~ 174 (214)
T TIGR02673 95 TVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSE 174 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHH
Confidence 11 1234556676666666778888888877666654 6899999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEee
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNV 690 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~ 690 (813)
.+.. +++.+.+ .|.++|++||+.+.. .+++++..+.+|
T Consensus 175 ~l~~-~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 175 RILD-LLKRLNK-RGTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred HHHH-HHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 7755 4444555 488999999997655 467766555443
No 67
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.75 E-value=1.3e-17 Score=176.29 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=109.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------------------------hhccccccCCcc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------------------------AQIGCFVPCDSA 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----------------------------aq~g~~vpa~~~ 590 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... ...-.++|....
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFN 95 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcc
Confidence 3578899999999999999999999999999999754210 001123333211
Q ss_pred ---chhH----------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q psy5289 591 ---TISV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGT 644 (813)
Q Consensus 591 ---~~~~----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gt 644 (813)
..++ +..++.++|+.+......+++|+++++...+++. +.+|+++|||||++|+
T Consensus 96 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~L 175 (250)
T PRK11264 96 LFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSAL 175 (250)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 0111 1233455566555566677888888876665554 6899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 645 STFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 645 d~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
|+.....+.. +++.+.+ .|.++|++||+.+.. .+++++..+.+|++..
T Consensus 176 D~~~~~~l~~-~l~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 176 DPELVGEVLN-TIRQLAQ-EKRTMVIVTHEMSFARDVADRAIFMDQGRIVE 224 (250)
T ss_pred CHHHHHHHHH-HHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9987776644 5556665 488999999997765 5788877777776653
No 68
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.75 E-value=1e-17 Score=161.47 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=114.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh-----------------------h-hhhccccc------cCC
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV-----------------------F-LAQIGCFV------PCD 588 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~-----------------------~-laq~g~~v------pa~ 588 (813)
....+|++|++++|+++-||||+|||||||||.|.... + -.|+|.-. |..
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~ 94 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDR 94 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccc
Confidence 44788999999999999999999999999999985331 1 12333211 100
Q ss_pred c----------------cch-hHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 589 S----------------ATI-SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 589 ~----------------~~~-~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
. .++ ..+...+.++|+.+....-.+++|++.+|...|+++ +.+|.++|.||||..+||.-..
T Consensus 95 tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~ 174 (223)
T COG2884 95 TVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSW 174 (223)
T ss_pred hHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHH
Confidence 0 000 113356788999988888899999888887777776 5899999999999999998766
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHHhhc-CCCCceEeeEEEE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIALLS-RVIPTFRNVQVSA 694 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~-~~~~~v~~~~~~~ 694 (813)
.+.. +++.+.. .|.|||+||||.++.+-. .++..+.+|++..
T Consensus 175 ~im~-lfeeinr-~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 175 EIMR-LFEEINR-LGTTVLMATHDLELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred HHHH-HHHHHhh-cCcEEEEEeccHHHHHhccCcEEEEeCCEEEe
Confidence 6644 6666765 799999999999988754 4445567777654
No 69
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.75 E-value=3.6e-18 Score=168.42 Aligned_cols=144 Identities=15% Similarity=0.154 Sum_probs=97.5
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccc-cccCCc-cchhHHHHHHHhcCCchhHhhccchhHH
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC-FVPCDS-ATISVVDQIFTRVGAADSQYRGISTFMM 617 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~-~vpa~~-~~~~~~d~i~~~~~~~d~~~~~~s~f~~ 617 (813)
.+.++++|++.+|++++|+||||||||||+|+++++.... .|. .+.... ......+..-..++. ...+|+
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~~~~~~~~~~~~~~~i~~-------~~qLS~ 85 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGKEVSFASPRDARRAGIAM-------VYQLSV 85 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEECCcCCHHHHHhcCeEE-------EEecCH
Confidence 5778999999999999999999999999999997654321 221 111100 011111111111221 112777
Q ss_pred HHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChH-HHhhcCCCCceEeeEEE
Q psy5289 618 EMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHE-IALLSRVIPTFRNVQVS 693 (813)
Q Consensus 618 e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~e-l~~~~~~~~~v~~~~~~ 693 (813)
++++...+++ .+.+|+++|+|||++|+|+.....+.. ++..+.+ .+.++|++||+.+ +...++++..+.+|++.
T Consensus 86 G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~-~l~~~~~-~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 86 GERQMVEIARALARNARLLILDEPTAALTPAEVERLFK-VIRRLRA-QGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH-HHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 7776655554 578999999999999999988777754 5555555 4889999999986 45678887777777664
No 70
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.75 E-value=9e-18 Score=182.13 Aligned_cols=156 Identities=15% Similarity=0.215 Sum_probs=115.6
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhccccccCCcc---chh---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQIGCFVPCDSA---TIS--- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~g~~vpa~~~---~~~--- 593 (813)
..+.++++|++++|++++|+||||||||||||+++++... .+.-.++|.... .++
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e 94 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVRE 94 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHH
Confidence 4578899999999999999999999999999999654210 011123333211 111
Q ss_pred ------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHH
Q psy5289 594 ------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMAC 654 (813)
Q Consensus 594 ------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~ 654 (813)
.++.++..+|+.+...+..+.+|++|++...+++. +.+|+++|||||++|+|+.....+ +
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l-~ 173 (301)
T TIGR03522 95 YLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI-R 173 (301)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 12345566777766777788899988887665554 699999999999999999877666 5
Q ss_pred HHHHHHHhcCCCEEEEEcCChH-HHhhcCCCCceEeeEEEEEEE
Q psy5289 655 SIARELASHRQPFTLFATHFHE-IALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 655 ~i~~~l~~~~~~~~l~~TH~~e-l~~~~~~~~~v~~~~~~~~~~ 697 (813)
.++..+.+ +.++|++||+++ +.++++++..+.+|++....+
T Consensus 174 ~~l~~~~~--~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~ 215 (301)
T TIGR03522 174 NVIKNIGK--DKTIILSTHIMQEVEAICDRVIIINKGKIVADKK 215 (301)
T ss_pred HHHHHhcC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 45666654 689999999976 556899988899999886554
No 71
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.74 E-value=9.3e-18 Score=172.96 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=107.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------------------hhccccccCCcc---chh
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------------------AQIGCFVPCDSA---TIS 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----------------------aq~g~~vpa~~~---~~~ 593 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..+
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLT 92 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCc
Confidence 4578899999999999999999999999999999754210 011123333211 011
Q ss_pred H----------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 594 V----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 594 ~----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
+ +..++.++|+.+.+.....++|+++++...+++. +.+|+++|||||++|+|+....
T Consensus 93 ~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~ 172 (213)
T cd03262 93 VLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVG 172 (213)
T ss_pred HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 1 1234556666666667778888888876666554 6899999999999999997766
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQ 691 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~ 691 (813)
.+ ..++..+.+ .|.++|++||+.+.. .+++++..+.+|+
T Consensus 173 ~l-~~~l~~~~~-~~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 173 EV-LDVMKDLAE-EGMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred HH-HHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 66 445556665 488999999997765 5788766565543
No 72
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.74 E-value=1e-17 Score=175.52 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=109.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-------------------hccccccCCcc---chhH--
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------------------QIGCFVPCDSA---TISV-- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-------------------q~g~~vpa~~~---~~~~-- 594 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.... +...++|.... ..++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 93 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQ 93 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHH
Confidence 45788999999999999999999999999999997542100 01123333211 1111
Q ss_pred -------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHH
Q psy5289 595 -------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMAC 654 (813)
Q Consensus 595 -------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~ 654 (813)
+..++..+|+.+........+|+++++...+++. +.+|+++|||||++|+|+.....+..
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~ 173 (236)
T TIGR03864 94 NLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVA 173 (236)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence 1234556666666666778888888876655554 68999999999999999988777755
Q ss_pred HHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 655 SIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 655 ~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
++..+.++.|.++|++||+.+....++++..+.+|++.
T Consensus 174 -~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~ 211 (236)
T TIGR03864 174 -HVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVL 211 (236)
T ss_pred -HHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEE
Confidence 44455532488999999998877767776666666654
No 73
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=8.5e-18 Score=181.09 Aligned_cols=155 Identities=16% Similarity=0.111 Sum_probs=113.6
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh----------------------hhhccccccCCc----cchh
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF----------------------LAQIGCFVPCDS----ATIS 593 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~----------------------laq~g~~vpa~~----~~~~ 593 (813)
.+.++++|++.+|++++|+||||||||||+|+++++.. +.+...++|... ...+
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 100 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET 100 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence 57889999999999999999999999999999965421 011112444431 0111
Q ss_pred H---------------------HHHHHHhcCCc--hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 594 V---------------------VDQIFTRVGAA--DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 594 ~---------------------~d~i~~~~~~~--d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
+ ++.++..+|+. +......+.+|++|++...+++. +.+|+++|||||++|+|+...
T Consensus 101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~ 180 (287)
T PRK13637 101 IEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR 180 (287)
T ss_pred HHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHH
Confidence 1 23355666775 44566678899998887776665 689999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
..+. .++..+.++.|.++|++||+++.+ .+++++..+.+|++.+.
T Consensus 181 ~~l~-~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~ 226 (287)
T PRK13637 181 DEIL-NKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQ 226 (287)
T ss_pred HHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 7764 456566553489999999998765 67898887888877654
No 74
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.74 E-value=7.6e-18 Score=185.86 Aligned_cols=158 Identities=16% Similarity=0.118 Sum_probs=117.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh------------------hccccccCCccc---h-----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA------------------QIGCFVPCDSAT---I----- 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la------------------q~g~~vpa~~~~---~----- 592 (813)
..+.++++|++.+|++++|+||||||||||||+|+++.... ..-.+++...+- .
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eN 96 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADN 96 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHH
Confidence 34788999999999999999999999999999997653110 001233322211 1
Q ss_pred ----------------hHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHH
Q psy5289 593 ----------------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACS 655 (813)
Q Consensus 593 ----------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~ 655 (813)
..++.++..+++.+........+|++++|...+++. +.+|+++|||||++|+|+.....+...
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~ 176 (353)
T TIGR03265 97 IAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE 176 (353)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 123456677788777778888999888876666654 689999999999999999888877554
Q ss_pred HHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEEEEE
Q psy5289 656 IARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 656 i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~~~~ 697 (813)
+..+.++.|.++|++||+.+. ..+++++..+.+|++....+
T Consensus 177 -L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~ 218 (353)
T TIGR03265 177 -IRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGT 218 (353)
T ss_pred -HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 444554368999999999765 57899988899999876554
No 75
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.74 E-value=8.2e-18 Score=173.48 Aligned_cols=150 Identities=14% Similarity=0.129 Sum_probs=106.1
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------------hhccccccCCcc---chh
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------------AQIGCFVPCDSA---TIS 593 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------------aq~g~~vpa~~~---~~~ 593 (813)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..+
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 94 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRN 94 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCc
Confidence 467899999999999999999999999999999754210 011123333211 011
Q ss_pred H---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q psy5289 594 V---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFG 651 (813)
Q Consensus 594 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~ 651 (813)
+ +..++.++|+.+.......++|+++++...+++. +.+|+++|||||++|+|+.....
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 174 (214)
T cd03292 95 VYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE 174 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence 1 2234556676666666677888888876665554 68999999999999999988777
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeE
Q psy5289 652 MACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQ 691 (813)
Q Consensus 652 i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~ 691 (813)
+.. +++.+.+ .|.++|++||+.+... +++++..+.+|+
T Consensus 175 ~~~-~l~~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 175 IMN-LLKKINK-AGTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred HHH-HHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 655 4455555 4889999999987664 677766565553
No 76
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.74 E-value=8.4e-18 Score=176.08 Aligned_cols=166 Identities=13% Similarity=0.139 Sum_probs=113.7
Q ss_pred ccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccc
Q psy5289 526 QCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFV 585 (813)
Q Consensus 526 ~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~v 585 (813)
+.-|+++....+...+.++++|++.+|++++|+||||||||||||+++++... .++ .++
T Consensus 21 ~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i-~~~ 99 (236)
T cd03267 21 GSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRI-GVV 99 (236)
T ss_pred hhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccE-EEE
Confidence 33444432222345688999999999999999999999999999999754210 012 233
Q ss_pred cCCc----cchhHH---------------------HHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeC
Q psy5289 586 PCDS----ATISVV---------------------DQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDE 639 (813)
Q Consensus 586 pa~~----~~~~~~---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDE 639 (813)
|.+. ...++. ..++..+|+.+........+|+++++...+++ .+.+|+++||||
T Consensus 100 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 179 (236)
T cd03267 100 FGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDE 179 (236)
T ss_pred cCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3211 011111 22344556655555666788888887766555 468999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEE
Q psy5289 640 LGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVS 693 (813)
Q Consensus 640 p~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~ 693 (813)
|++|+|+.....+.. ++..+.++.++++|++||+.+. ..+++++..+.+|++.
T Consensus 180 Pt~~LD~~~~~~l~~-~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 233 (236)
T cd03267 180 PTIGLDVVAQENIRN-FLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233 (236)
T ss_pred CCCCCCHHHHHHHHH-HHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 999999988777755 4445554357899999999876 4678888777777764
No 77
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.74 E-value=8.3e-18 Score=174.25 Aligned_cols=154 Identities=16% Similarity=0.149 Sum_probs=109.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-------------------hccccccCCcc---chh---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------------------QIGCFVPCDSA---TIS--- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-------------------q~g~~vpa~~~---~~~--- 593 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.... +.-.++|.... ..+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 94 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE 94 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHH
Confidence 35788999999999999999999999999999997542110 00123332211 001
Q ss_pred ------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q psy5289 594 ------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMAC 654 (813)
Q Consensus 594 ------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~ 654 (813)
.++.++..+++.+......+++|+++++...+++ .+.+|+++|||||++|+|+.....+..
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 174 (220)
T cd03263 95 HLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD 174 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHH
Confidence 1233456667766666667788888777666555 578999999999999999987776644
Q ss_pred HHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 655 SIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 655 ~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
++..+.+ +.++|++||+++.. .+++++..+.+|++...
T Consensus 175 -~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 213 (220)
T cd03263 175 -LILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCI 213 (220)
T ss_pred -HHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 5555554 58999999998776 57888777778777543
No 78
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.74 E-value=1.3e-17 Score=172.52 Aligned_cols=152 Identities=18% Similarity=0.257 Sum_probs=110.2
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-------------------hccccccCCcc---chh----
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------------------QIGCFVPCDSA---TIS---- 593 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-------------------q~g~~vpa~~~---~~~---- 593 (813)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.++|.... ..+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 5788999999999999999999999999999997653110 01113332210 011
Q ss_pred -----------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHH
Q psy5289 594 -----------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACS 655 (813)
Q Consensus 594 -----------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~ 655 (813)
.++.++.++|+.+.+......+|+++++...+++. +.+|+++|||||++|+|+.....+..
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~- 177 (218)
T cd03266 99 LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE- 177 (218)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHH-
Confidence 12335666777766677778888888776666554 68999999999999999988777655
Q ss_pred HHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEE
Q psy5289 656 IARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVS 693 (813)
Q Consensus 656 i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~ 693 (813)
++..+.+ .|+++|++||+.+. ..+++++..+.+|++.
T Consensus 178 ~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~ 215 (218)
T cd03266 178 FIRQLRA-LGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215 (218)
T ss_pred HHHHHHH-CCCEEEEEeCCHHHHHHhcCEEEEEECCEEe
Confidence 5555555 48999999999765 4578887777777664
No 79
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.74 E-value=7.5e-18 Score=186.21 Aligned_cols=171 Identities=16% Similarity=0.157 Sum_probs=123.4
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh-cc-----------------
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IG----------------- 582 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-~g----------------- 582 (813)
.+.+++..+-+ +...+.++++|++..|++++|+||||||||||||+|+++..... .|
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r 79 (362)
T TIGR03258 5 GIRIDHLRVAY-----GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79 (362)
T ss_pred EEEEEEEEEEE-----CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHC
Confidence 45566554433 12457899999999999999999999999999999976532211 01
Q ss_pred --ccccCCcc---chh---------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEE
Q psy5289 583 --CFVPCDSA---TIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLV 635 (813)
Q Consensus 583 --~~vpa~~~---~~~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~Ll 635 (813)
.+++...+ ..+ .++.++..+++.+...+...++|++++|...+++. +.+|+++
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ll 159 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL 159 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 12222211 001 12345667787777777888999888887666654 6899999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHHhcC-CCEEEEEcCChHH-HhhcCCCCceEeeEEEEEEE
Q psy5289 636 IIDELGRGTSTFDGFGMACSIARELASHR-QPFTLFATHFHEI-ALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 636 llDEp~~Gtd~~d~~~i~~~i~~~l~~~~-~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~~~~ 697 (813)
|||||++|+|+.....+.. .+..+.++. |.++|++|||.+. ..+++++..+.+|++....+
T Consensus 160 LLDEP~s~LD~~~r~~l~~-~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 160 LLDEPLSALDANIRANMRE-EIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGE 222 (362)
T ss_pred EEcCccccCCHHHHHHHHH-HHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999988777755 455565534 7899999999765 46889988899998876554
No 80
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.74 E-value=1.1e-17 Score=172.21 Aligned_cols=150 Identities=18% Similarity=0.197 Sum_probs=106.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc----chhH
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA----TISV 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~----~~~~ 594 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..++
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~ 93 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV 93 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence 3577899999999999999999999999999999654210 011123333210 1111
Q ss_pred ---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHH
Q psy5289 595 ---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGM 652 (813)
Q Consensus 595 ---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i 652 (813)
+..++.++++.+.+....+.+|+++++...+++. +.+|+++|||||++|+|+.....+
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 173 (211)
T cd03225 94 EEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173 (211)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1234556676666667778899888887666664 689999999999999999887777
Q ss_pred HHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEee
Q psy5289 653 ACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNV 690 (813)
Q Consensus 653 ~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~ 690 (813)
.. ++..+.+ .|+++|++||+.+... +++++..+.+|
T Consensus 174 ~~-~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 174 LE-LLKKLKA-EGKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred HH-HHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 55 4555555 4899999999977654 57776555443
No 81
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=7.3e-18 Score=186.20 Aligned_cols=157 Identities=14% Similarity=0.125 Sum_probs=117.6
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-------------------hccccccCCcc---ch----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------------------QIGCFVPCDSA---TI---- 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-------------------q~g~~vpa~~~---~~---- 592 (813)
..+.++++|++++|++++|+||||||||||||+|+++.... .+| +||...+ ..
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig-~v~Q~~~lfp~~tv~e 95 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIA-MVFQNYALYPHMSVRE 95 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE-EEeCCccccCCCCHHH
Confidence 45788999999999999999999999999999997652110 111 2322211 01
Q ss_pred -----------------hHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHH
Q psy5289 593 -----------------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMAC 654 (813)
Q Consensus 593 -----------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~ 654 (813)
..++.++..+|+.+...+...++|++++|...+++. +.+|+++|||||++|+|+.....+..
T Consensus 96 Ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~ 175 (356)
T PRK11650 96 NMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRL 175 (356)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 112346677788777778888999888887666665 68999999999999999988877755
Q ss_pred HHHHHHHhcCCCEEEEEcCChH-HHhhcCCCCceEeeEEEEEEE
Q psy5289 655 SIARELASHRQPFTLFATHFHE-IALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 655 ~i~~~l~~~~~~~~l~~TH~~e-l~~~~~~~~~v~~~~~~~~~~ 697 (813)
. +..+.++.|.++|++|||.+ ...+++++..+.+|++....+
T Consensus 176 ~-l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~ 218 (356)
T PRK11650 176 E-IQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGT 218 (356)
T ss_pred H-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECC
Confidence 4 44555535899999999965 557899988888998876544
No 82
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.74 E-value=1.1e-17 Score=174.52 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=107.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------------hhccccccCCcc---chhH
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------------------AQIGCFVPCDSA---TISV 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------------------aq~g~~vpa~~~---~~~~ 594 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTV 92 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcH
Confidence 3577899999999999999999999999999999754210 011124443321 1111
Q ss_pred H------------------HHHHHhcC-CchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHH
Q psy5289 595 V------------------DQIFTRVG-AADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMAC 654 (813)
Q Consensus 595 ~------------------d~i~~~~~-~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~ 654 (813)
. ..++..++ ..+......+.+|+++++...+++. +.+|+++|||||++|+|+.....+..
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~ 172 (230)
T TIGR03410 93 EENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGR 172 (230)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH
Confidence 1 12233333 2333455566788888776666554 68999999999999999988777754
Q ss_pred HHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEE
Q psy5289 655 SIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSAL 695 (813)
Q Consensus 655 ~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~ 695 (813)
++..+.+..++++|++||+.+... +++++..+.+|++...
T Consensus 173 -~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~ 213 (230)
T TIGR03410 173 -VIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVAS 213 (230)
T ss_pred -HHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 555555424789999999987665 7888777777776543
No 83
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=7.1e-18 Score=174.07 Aligned_cols=158 Identities=19% Similarity=0.184 Sum_probs=110.3
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----------------------hccccccCCcc---chhH
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----------------------QIGCFVPCDSA---TISV 594 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----------------------q~g~~vpa~~~---~~~~ 594 (813)
...+|+++++..|+.++++|||||||||+||+||++-... .+| ||-...+ .+++
T Consensus 16 ~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG-fvFQ~YALF~HmtV 94 (345)
T COG1118 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG-FVFQHYALFPHMTV 94 (345)
T ss_pred cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee-EEEechhhcccchH
Confidence 3456899999999999999999999999999998653211 112 1111110 1111
Q ss_pred -----------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q psy5289 595 -----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 595 -----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
+..++.-+.+.+--......+|++++|+..+.+ .|..|+++|||||++++|..-..
T Consensus 95 a~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~ 174 (345)
T COG1118 95 ADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 174 (345)
T ss_pred HhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHH
Confidence 222334444444444455667777766554444 57899999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEECC
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQED 699 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~~~ 699 (813)
.+- ..+..+.++.|++++|+|||.+.+ ++++++..+.+|.++...+++
T Consensus 175 ~lr-~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ 223 (345)
T COG1118 175 ELR-RWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPD 223 (345)
T ss_pred HHH-HHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHH
Confidence 774 455556665799999999997555 689999999999987766543
No 84
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.9e-17 Score=174.02 Aligned_cols=154 Identities=13% Similarity=0.107 Sum_probs=109.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------------hhccccccCCcc---chhH
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------------------AQIGCFVPCDSA---TISV 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------------------aq~g~~vpa~~~---~~~~ 594 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..++
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSV 95 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcH
Confidence 4688899999999999999999999999999999754210 011123333211 0111
Q ss_pred ----------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q psy5289 595 ----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFG 651 (813)
Q Consensus 595 ----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~ 651 (813)
.+.++..++..+.......++|+++++...+++. +.+|+++|||||++|+|+.....
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (241)
T PRK10895 96 YDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVID 175 (241)
T ss_pred HHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 2334555566555556667888888876665554 68999999999999999987766
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCChH-HHhhcCCCCceEeeEEEE
Q psy5289 652 MACSIARELASHRQPFTLFATHFHE-IALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 652 i~~~i~~~l~~~~~~~~l~~TH~~e-l~~~~~~~~~v~~~~~~~ 694 (813)
+ +.++..+.+ .|.++|++||+.+ +..+++++..+.+|++..
T Consensus 176 l-~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 217 (241)
T PRK10895 176 I-KRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIA 217 (241)
T ss_pred H-HHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe
Confidence 6 445666665 5889999999974 567888877777777654
No 85
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.6e-17 Score=177.08 Aligned_cols=169 Identities=15% Similarity=0.157 Sum_probs=118.0
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------h
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------A 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------a 579 (813)
..+.+++...-+ +...+.++++|++.+|++++|+||||||||||||+++++... .
T Consensus 6 ~~l~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (265)
T PRK10253 6 ARLRGEQLTLGY-----GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80 (265)
T ss_pred cEEEEEEEEEEE-----CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHh
Confidence 456776654322 124689999999999999999999999999999999754210 0
Q ss_pred hccccccCCcc---chh-------------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CC
Q psy5289 580 QIGCFVPCDSA---TIS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CT 630 (813)
Q Consensus 580 q~g~~vpa~~~---~~~-------------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~ 630 (813)
..-.++|.... ... .++.++..+++.+........+|+++++...+++. +.
T Consensus 81 ~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 160 (265)
T PRK10253 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ 160 (265)
T ss_pred hheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhc
Confidence 00112332210 001 12334556676666667778888888876666655 68
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChH-HHhhcCCCCceEeeEEEE
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHE-IALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~e-l~~~~~~~~~v~~~~~~~ 694 (813)
+|+++|||||++|+|+.....+.. ++..+.+..|.++|++||+.+ +..+++++..+.+|++..
T Consensus 161 ~p~llllDEPt~gLD~~~~~~l~~-~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (265)
T PRK10253 161 ETAIMLLDEPTTWLDISHQIDLLE-LLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA 224 (265)
T ss_pred CCCEEEEeCccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999988777755 444555434889999999986 557888877777776653
No 86
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.3e-17 Score=176.75 Aligned_cols=154 Identities=17% Similarity=0.176 Sum_probs=109.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhcc-ccccCCcc---chhH
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIG-CFVPCDSA---TISV 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g-~~vpa~~~---~~~~ 594 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... ...+ .++|.... ..++
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTV 97 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcH
Confidence 4678899999999999999999999999999999754210 0111 12332211 0111
Q ss_pred ------------------------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEE
Q psy5289 595 ------------------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVII 637 (813)
Q Consensus 595 ------------------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~Llll 637 (813)
+..++..+|+.+........+|+++++...+++. +.+|+++||
T Consensus 98 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 177 (255)
T PRK11300 98 IENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILML 177 (255)
T ss_pred HHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1223445666666667777888888876666655 689999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEE
Q psy5289 638 DELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 638 DEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~ 693 (813)
|||++|+|+.....+ +.++..+.++.|+++|++||+.+.. .+++++..+.+|++.
T Consensus 178 DEPt~~LD~~~~~~l-~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 233 (255)
T PRK11300 178 DEPAAGLNPKETKEL-DELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL 233 (255)
T ss_pred cCCccCCCHHHHHHH-HHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 999999999877776 4455556553489999999998765 678877667776664
No 87
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.74 E-value=2.4e-18 Score=173.26 Aligned_cols=162 Identities=19% Similarity=0.168 Sum_probs=114.9
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hhhcccc----ccCCccchh
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LAQIGCF----VPCDSATIS 593 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------laq~g~~----vpa~~~~~~ 593 (813)
+-.+.|||+|+..+|++++|+|||||||||+++.|.+... .++.|.. ++.-...++
T Consensus 16 Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lT 95 (250)
T COG0411 16 GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLT 95 (250)
T ss_pred CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCc
Confidence 3457899999999999999999999999999999853210 0111100 000000111
Q ss_pred ---------------------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeC
Q psy5289 594 ---------------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDE 639 (813)
Q Consensus 594 ---------------------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDE 639 (813)
....++.++|+.+......+.++.+.+++..|.+ .|++|.|++|||
T Consensus 96 VlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDE 175 (250)
T COG0411 96 VLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDE 175 (250)
T ss_pred HHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecC
Confidence 1123566677776666666677766666555554 479999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEECCe
Q psy5289 640 LGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQEDN 700 (813)
Q Consensus 640 p~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~~~~ 700 (813)
|.+|+++.+...++. ++..+.+..|.+++++-||+.+. .++|++..+..|++.+...+++
T Consensus 176 PaAGln~~e~~~l~~-~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 176 PAAGLNPEETEELAE-LIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred ccCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHH
Confidence 999999999998866 55567764679999999998876 4889888888887776665443
No 88
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.74 E-value=1.5e-17 Score=171.51 Aligned_cols=149 Identities=22% Similarity=0.230 Sum_probs=106.6
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------hhccccccCCcc-----chh-----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------------AQIGCFVPCDSA-----TIS----- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------------aq~g~~vpa~~~-----~~~----- 593 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..+
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l 91 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVV 91 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHH
Confidence 3477899999999999999999999999999999754211 011123332210 001
Q ss_pred --------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHH
Q psy5289 594 --------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGM 652 (813)
Q Consensus 594 --------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i 652 (813)
.+..++..+++.+......+++|+++++...+++. +.+|+++|||||++|+|+.....+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 171 (213)
T cd03235 92 LMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDI 171 (213)
T ss_pred HhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 12335566677666667778899888887666654 689999999999999999887777
Q ss_pred HHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEe
Q psy5289 653 ACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRN 689 (813)
Q Consensus 653 ~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~ 689 (813)
.. ++..+.+ .|.++|++||+.+.. .+++++..+.+
T Consensus 172 ~~-~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~ 207 (213)
T cd03235 172 YE-LLRELRR-EGMTILVVTHDLGLVLEYFDRVLLLNR 207 (213)
T ss_pred HH-HHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcC
Confidence 55 4445555 588999999998665 56777655544
No 89
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.74 E-value=1.3e-17 Score=186.20 Aligned_cols=156 Identities=18% Similarity=0.240 Sum_probs=117.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------h-hccccccCCcc---c---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------A-QIGCFVPCDSA---T--- 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------a-q~g~~vpa~~~---~--- 591 (813)
..+.++++|++.+|++++|+||||||||||||+++++... + ++| ++|.+.. .
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig-~v~q~~~l~~~~tv 94 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA-SVPQDTSLSFEFDV 94 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE-EEccCCCCCCCCCH
Confidence 4578899999999999999999999999999999754210 0 122 2332211 0
Q ss_pred ----------------------hhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q psy5289 592 ----------------------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 592 ----------------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d 648 (813)
...++.++..+++.+...+....+|++++|...+++. +.+|+++|||||++|+|+..
T Consensus 95 ~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~ 174 (402)
T PRK09536 95 RQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINH 174 (402)
T ss_pred HHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 0123445667777777777788899888887766665 68999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
...+. .++..+.+ .|.++|++||+.+++ ++++++..+.+|++.....
T Consensus 175 ~~~l~-~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 175 QVRTL-ELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred HHHHH-HHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecC
Confidence 77774 46666665 588999999998777 6899988899998876544
No 90
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.3e-17 Score=178.55 Aligned_cols=155 Identities=17% Similarity=0.116 Sum_probs=113.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc----chhH
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA----TISV 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~----~~~~ 594 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..++
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 97 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTV 97 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcH
Confidence 3578899999999999999999999999999999754210 011123333210 0111
Q ss_pred ---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHH
Q psy5289 595 ---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGM 652 (813)
Q Consensus 595 ---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i 652 (813)
++.++..+|+.+........+|+++++...+++. +.+|+++|||||++|+|+.....+
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l 177 (274)
T PRK13647 98 WDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL 177 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence 2234555666666666778899888887766665 689999999999999999887777
Q ss_pred HHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 653 ACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 653 ~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
. .++..+++ .|+++|++||+++.+ ++++++..+.+|++...
T Consensus 178 ~-~~l~~~~~-~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (274)
T PRK13647 178 M-EILDRLHN-QGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE 219 (274)
T ss_pred H-HHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 4 45556665 489999999998876 68898888888877644
No 91
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.6e-17 Score=177.18 Aligned_cols=168 Identities=14% Similarity=0.152 Sum_probs=116.2
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hh
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQ 580 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq 580 (813)
.+.+++....+ ++..+.++++|++.+|++++|+||||||||||+|+++++... .+
T Consensus 11 ~l~i~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (265)
T PRK10575 11 TFALRNVSFRV-----PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 (265)
T ss_pred eEEEeeEEEEE-----CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhh
Confidence 46666654332 124688999999999999999999999999999999754210 00
Q ss_pred ccccccCCcc---chh-------------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCC
Q psy5289 581 IGCFVPCDSA---TIS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTE 631 (813)
Q Consensus 581 ~g~~vpa~~~---~~~-------------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~ 631 (813)
...++|.... ..+ .++.++.++++.+.+......+|+++++...+++ .+.+
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 165 (265)
T PRK10575 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQD 165 (265)
T ss_pred heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 0113332210 001 1233556666666566667788888877666555 4689
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 632 ~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
|+++|||||++|+|+.....+.. ++..+.+..|+++|++||+.+.. .+++++..+.+|++..
T Consensus 166 p~lllLDEPt~~LD~~~~~~~~~-~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 166 SRCLLLDEPTSALDIAHQVDVLA-LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred CCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 99999999999999987776644 55555543489999999998765 6888877777777653
No 92
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.5e-17 Score=177.53 Aligned_cols=155 Identities=17% Similarity=0.120 Sum_probs=110.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------hhccccccCCcc---c
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------AQIGCFVPCDSA---T 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------aq~g~~vpa~~~---~ 591 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... ...-.++|.... .
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 116 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH 116 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCC
Confidence 3567899999999999999999999999999999754210 001123332211 0
Q ss_pred hhH---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 592 ISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 592 ~~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
.++ +..++..+++.+.+......+|+++++...+++. +.+|+++|||||++|+|+...
T Consensus 117 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~ 196 (269)
T cd03294 117 RTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIR 196 (269)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 111 2234556777666677778889888877666655 689999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~ 694 (813)
..+.. ++..+.+..|.++|++||+.+. ..+++++..+.+|++..
T Consensus 197 ~~l~~-~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 241 (269)
T cd03294 197 REMQD-ELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ 241 (269)
T ss_pred HHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 77644 5555544348899999999865 46788777777776643
No 93
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.74 E-value=4.7e-18 Score=182.46 Aligned_cols=180 Identities=18% Similarity=0.191 Sum_probs=127.3
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh-----cc-------------ccccCCcc---chhH-----
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-----IG-------------CFVPCDSA---TISV----- 594 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-----~g-------------~~vpa~~~---~~~~----- 594 (813)
+.+++++++.+|++++|+|||||||||+||+||++.-... .| .+|++..+ .+++
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Nia 97 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIA 97 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhh
Confidence 8889999999999999999999999999999987632110 00 11222211 2222
Q ss_pred ----------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q psy5289 595 ----------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIA 657 (813)
Q Consensus 595 ----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~ 657 (813)
+..+...+++.+.+.+..+.+|++.+|...+.++ +.+|+++|||||.+.+|..-...+... +
T Consensus 98 f~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~e-i 176 (338)
T COG3839 98 FGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSE-I 176 (338)
T ss_pred hhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHH-H
Confidence 2234556788888888899999988876666655 689999999999999998877776544 4
Q ss_pred HHHHhcCCCEEEEEcCCh-HHHhhcCCCCceEeeEEEEEEECCeEEEEEEeccCCCCCcHHHHHHHHCCCCHHHH
Q psy5289 658 RELASHRQPFTLFATHFH-EIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDML 731 (813)
Q Consensus 658 ~~l~~~~~~~~l~~TH~~-el~~~~~~~~~v~~~~~~~~~~~~~i~~~y~l~~G~~~~s~gi~vA~~ag~p~~vi 731 (813)
..++++.|.|+|++|||. |...+++++..+.+|++.-...+.++. . -++ ..-||...|.|+--+
T Consensus 177 ~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely---~---~P~----n~fVA~FiG~p~mn~ 241 (338)
T COG3839 177 KKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY---E---RPA----NLFVAGFIGSPPMNF 241 (338)
T ss_pred HHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh---h---Ccc----chhhhhhcCChhhcC
Confidence 446666799999999995 666688888877778887655544331 1 011 345777777765433
No 94
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.74 E-value=2e-17 Score=171.77 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=111.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----------------hccccccCCcc---chhH-----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----------------QIGCFVPCDSA---TISV----- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----------------q~g~~vpa~~~---~~~~----- 594 (813)
..+.++++|++.+|++++|+||||||||||+++++++.... +.-.++|.... ..++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~ 92 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLK 92 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHH
Confidence 45778999999999999999999999999999997652110 00113333211 1111
Q ss_pred ------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHH
Q psy5289 595 ------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELA 661 (813)
Q Consensus 595 ------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~ 661 (813)
+..++.++|+.+........+|+++++...+++ .+.+|+++|||||++|+|+.....+.. ++..+.
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~L~~~~ 171 (223)
T TIGR03740 93 VHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRE-LIRSFP 171 (223)
T ss_pred HHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHH-HHHHHH
Confidence 233456677766666677788887777655555 468999999999999999987777644 555565
Q ss_pred hcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 662 SHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 662 ~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
+ .|.++|++||+.+.. .+++++..+.+|++...
T Consensus 172 ~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~ 205 (223)
T TIGR03740 172 E-QGITVILSSHILSEVQQLADHIGIISEGVLGYQ 205 (223)
T ss_pred H-CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 5 488999999998766 57888877888777543
No 95
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.4e-17 Score=178.22 Aligned_cols=155 Identities=15% Similarity=0.096 Sum_probs=112.6
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------------hhccccccCCcc----chhH
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------------------AQIGCFVPCDSA----TISV 594 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------------------aq~g~~vpa~~~----~~~~ 594 (813)
.+.++++|++.+|++++|+||||||||||||+++++... ...-.++|.... ..++
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 95 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTV 95 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchH
Confidence 478899999999999999999999999999999754210 001123333210 0111
Q ss_pred ---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHH
Q psy5289 595 ---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGM 652 (813)
Q Consensus 595 ---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i 652 (813)
+..++..+|+.+........+|+++++...+++. +.+|+++|||||++|+|+.....+
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 175 (274)
T PRK13644 96 EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 2234555666666666778888888887766664 689999999999999999876666
Q ss_pred HHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEE
Q psy5289 653 ACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 653 ~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~ 696 (813)
+.++..+.+ .|.++|++||+.+....++++..+.+|++....
T Consensus 176 -~~~l~~l~~-~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g 217 (274)
T PRK13644 176 -LERIKKLHE-KGKTIVYITHNLEELHDADRIIVMDRGKIVLEG 217 (274)
T ss_pred -HHHHHHHHh-CCCEEEEEecCHHHHhhCCEEEEEECCEEEEEC
Confidence 445555665 589999999998887778887778887776543
No 96
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=6.3e-18 Score=174.76 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=113.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----------------------hcccc--ccCCcc----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----------------------QIGCF--VPCDSA---- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----------------------q~g~~--vpa~~~---- 590 (813)
..+.+++++++.+|+.++|+|||||||||++++++++.... ++|.- -|....
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t 96 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT 96 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence 46788999999999999999999999999999996553211 11110 011100
Q ss_pred ------------------chhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHH
Q psy5289 591 ------------------TISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFG 651 (813)
Q Consensus 591 ------------------~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~ 651 (813)
-...++..+..+|..+...+...++|++.+|+..|+. .|.+|.++||||||+|+|+.....
T Consensus 97 V~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~ 176 (235)
T COG1122 97 VEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176 (235)
T ss_pred HHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHH
Confidence 0112345667788888888888888877766555544 578999999999999999987777
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEE
Q psy5289 652 MACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSA 694 (813)
Q Consensus 652 i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~ 694 (813)
+. .++..+.+..|.++|++|||++... +++++..+.+|++..
T Consensus 177 l~-~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~ 219 (235)
T COG1122 177 LL-ELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA 219 (235)
T ss_pred HH-HHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEee
Confidence 64 4666777645789999999987665 588887777777733
No 97
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.3e-17 Score=174.68 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=109.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----------------hccccccCCcc---chh------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----------------QIGCFVPCDSA---TIS------ 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----------------q~g~~vpa~~~---~~~------ 593 (813)
..+.++++|++.+|++++|+||||||||||||+++++.... .+ .++|.... ..+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~-~~v~q~~~~~~~~tv~e~l~ 92 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER-GVVFQNEGLLPWRNVQDNVA 92 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcE-EEEeCCCccCCCCcHHHHHH
Confidence 45788999999999999999999999999999997553110 01 12332211 001
Q ss_pred ---------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q psy5289 594 ---------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIA 657 (813)
Q Consensus 594 ---------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~ 657 (813)
.+..++.++|+.+........+|+++++...+++. +.+|+++|||||++|+|+.....+.. ++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L 171 (255)
T PRK11248 93 FGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQT-LL 171 (255)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HH
Confidence 12345566777666666778888888876666554 68999999999999999987776644 55
Q ss_pred HHHHhcCCCEEEEEcCChHHH-hhcCCCCceE--eeEEEE
Q psy5289 658 RELASHRQPFTLFATHFHEIA-LLSRVIPTFR--NVQVSA 694 (813)
Q Consensus 658 ~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~--~~~~~~ 694 (813)
..+.+..|+++|++||+.+.. .+++++..+. +|++..
T Consensus 172 ~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 172 LKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 555432489999999997765 5778776676 366644
No 98
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.2e-17 Score=184.09 Aligned_cols=170 Identities=16% Similarity=0.146 Sum_probs=122.5
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-------------------hc
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------------------QI 581 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-------------------q~ 581 (813)
.|.+++..+.+ +...+.++++|++.+|++++|+||||||||||||+|+++.... .+
T Consensus 6 ~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRF-----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDI 80 (351)
T ss_pred EEEEEeEEEEE-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 45666554433 2245788999999999999999999999999999997643110 11
Q ss_pred cccccCCcc---chh---------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEE
Q psy5289 582 GCFVPCDSA---TIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVI 636 (813)
Q Consensus 582 g~~vpa~~~---~~~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~Lll 636 (813)
| +++.+.+ ..+ .++.++..+++.+...+..+.+|++++|...+.+. +.+|+++|
T Consensus 81 g-~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL 159 (351)
T PRK11432 81 C-MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLL 159 (351)
T ss_pred E-EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 1 2222221 111 12345666777766667778899888876666554 68999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 637 IDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 637 lDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
||||++|+|+.....+.. .+..+.++.|.++|++|||.+.+ .+++++..+.+|++.....
T Consensus 160 LDEP~s~LD~~~r~~l~~-~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~ 220 (351)
T PRK11432 160 FDEPLSNLDANLRRSMRE-KIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGS 220 (351)
T ss_pred EcCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999988887755 44555544589999999997655 7899998899998876554
No 99
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.1e-17 Score=181.33 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=112.2
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----------------------------------------
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA---------------------------------------- 579 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la---------------------------------------- 579 (813)
.+.++++|++.+|++++|+||||||||||+|+++++....
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 4788999999999999999999999999999997542110
Q ss_pred ----hccccccCCc----cchhH---------------------HHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-
Q psy5289 580 ----QIGCFVPCDS----ATISV---------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK- 628 (813)
Q Consensus 580 ----q~g~~vpa~~----~~~~~---------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~- 628 (813)
+.-.++|... ...++ +..++..+|+. +.......++|+++++...+++.
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL 180 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGIL 180 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 0012344321 00011 23345667775 55667778899888887666655
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEEE
Q psy5289 629 CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 629 ~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~~ 695 (813)
+.+|+++|||||++|+|+.....+ ..++..+.+ .|.++|++||+.+. ..+++++..+.+|.+...
T Consensus 181 ~~~P~lLlLDEPt~~LD~~~~~~l-~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~ 246 (305)
T PRK13651 181 AMEPDFLVFDEPTAGLDPQGVKEI-LEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKD 246 (305)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEE
Confidence 689999999999999999776665 456666665 58999999999875 578888877878776543
No 100
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=2e-17 Score=170.27 Aligned_cols=149 Identities=15% Similarity=0.152 Sum_probs=106.6
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh------------------hccccccCCcc---chh---------
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA------------------QIGCFVPCDSA---TIS--------- 593 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la------------------q~g~~vpa~~~---~~~--------- 593 (813)
+++|++.+|++++|+||||||||||+|+++++.... ..-.++|.... ..+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 889999999999999999999999999996542110 00112222211 001
Q ss_pred ------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q psy5289 594 ------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIAREL 660 (813)
Q Consensus 594 ------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l 660 (813)
.+..++.++++.+........+|+++++...+++. +.+|+++|||||++|+|+.....+.. ++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~ 174 (211)
T cd03298 96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLD-LVLDL 174 (211)
T ss_pred ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 12334556666665666677888888887766665 58999999999999999988777755 44455
Q ss_pred HhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEE
Q psy5289 661 ASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 661 ~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~ 693 (813)
.++.++++|++||+.+.. .+++++..+.+|++.
T Consensus 175 ~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 208 (211)
T cd03298 175 HAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208 (211)
T ss_pred HHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEe
Confidence 443589999999998765 678888777777764
No 101
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.3e-17 Score=183.45 Aligned_cols=157 Identities=19% Similarity=0.153 Sum_probs=115.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhccccccCCcc---chh---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQIGCFVPCDSA---TIS--- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~g~~vpa~~~---~~~--- 593 (813)
..+.++++|++.+|++++|+||||||||||||+|+++... ..+ .++|.... ..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i-~~v~Q~~~l~~~~tv~e 94 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGV-GMVFQSYALYPHLSVAE 94 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCE-EEEeCCcccCCCCCHHH
Confidence 4578899999999999999999999999999999765211 011 23333211 111
Q ss_pred ------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHH
Q psy5289 594 ------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMAC 654 (813)
Q Consensus 594 ------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~ 654 (813)
.+..++..+++.+......+++|++++|...+++. +.+|+++|||||++|+|+.....+..
T Consensus 95 ni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~ 174 (369)
T PRK11000 95 NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 174 (369)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 12345666777766777778899888887666655 68999999999999999988777755
Q ss_pred HHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEEEEE
Q psy5289 655 SIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 655 ~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~~~~ 697 (813)
++..+.++.|.++|++||+.+. ..+++++..+.+|++....+
T Consensus 175 -~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~ 217 (369)
T PRK11000 175 -EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217 (369)
T ss_pred -HHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 4455554358999999999765 56889888888888865543
No 102
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.73 E-value=1.1e-17 Score=184.43 Aligned_cols=158 Identities=15% Similarity=0.112 Sum_probs=117.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------hhccccccCCccc---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------AQIGCFVPCDSAT--- 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------aq~g~~vpa~~~~--- 591 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.++|....-
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 4567899999999999999999999999999999654210 1111233322110
Q ss_pred hh---------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 592 IS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 592 ~~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
.+ .+..++..+|+.+......+.+|++|+|...+++. +.+|+++|||||++|+|+...
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r 165 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR 165 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 01 12345677788777788888999999887766665 689999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEEEEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~~~~ 697 (813)
..+...+. .+.++.|.|+|++||+++. ..+++++..+.+|++.....
T Consensus 166 ~~l~~~l~-~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~ 213 (363)
T TIGR01186 166 DSMQDELK-KLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGT 213 (363)
T ss_pred HHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCC
Confidence 88755444 4554358999999999865 57889888888888865443
No 103
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.73 E-value=2.8e-17 Score=182.39 Aligned_cols=171 Identities=15% Similarity=0.076 Sum_probs=123.7
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-------------------h
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------------------Q 580 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-------------------q 580 (813)
..+.+++....+ +...+.++++|++.+|++++|+||||||||||||+|+++.... .
T Consensus 13 ~~L~l~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ 87 (375)
T PRK09452 13 PLVELRGISKSF-----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRH 87 (375)
T ss_pred ceEEEEEEEEEE-----CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCC
Confidence 457777665433 1245788999999999999999999999999999997653210 0
Q ss_pred ccccccCCcc---chh---------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEE
Q psy5289 581 IGCFVPCDSA---TIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLV 635 (813)
Q Consensus 581 ~g~~vpa~~~---~~~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~Ll 635 (813)
+ .+++...+ ..+ .++.++..+++.+.+.+...++|++++|...+++. +.+|+++
T Consensus 88 i-g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ll 166 (375)
T PRK09452 88 V-NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVL 166 (375)
T ss_pred E-EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1 12222211 111 12345666777777777888898888776666654 6899999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEEEEE
Q psy5289 636 IIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 636 llDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~~~~ 697 (813)
|||||++|+|+.....+.. .+..+.++.|.++|++|||.+. ..+++++..+.+|++.....
T Consensus 167 LLDEP~s~LD~~~r~~l~~-~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~ 228 (375)
T PRK09452 167 LLDESLSALDYKLRKQMQN-ELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228 (375)
T ss_pred EEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999988777755 4445554358999999999765 56899998899999876543
No 104
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.4e-17 Score=172.85 Aligned_cols=155 Identities=12% Similarity=0.083 Sum_probs=106.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------------hhccccccCCcc---chhH
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------------------AQIGCFVPCDSA---TISV 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------------------aq~g~~vpa~~~---~~~~ 594 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..++
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTV 97 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcH
Confidence 4688899999999999999999999999999999654210 011123333221 1112
Q ss_pred HH-------------------HHHHhc-CCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q psy5289 595 VD-------------------QIFTRV-GAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMA 653 (813)
Q Consensus 595 ~d-------------------~i~~~~-~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~ 653 (813)
.+ .++..+ +..+......+++|+++++...+++ .+.+|+++|||||++|+|+.....+.
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~ 177 (237)
T PRK11614 98 EENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIF 177 (237)
T ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHH
Confidence 22 122333 2333344455678877777665555 46899999999999999997766664
Q ss_pred HHHHHHHHhcCCCEEEEEcCChH-HHhhcCCCCceEeeEEEEE
Q psy5289 654 CSIARELASHRQPFTLFATHFHE-IALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 654 ~~i~~~l~~~~~~~~l~~TH~~e-l~~~~~~~~~v~~~~~~~~ 695 (813)
.++..+.+ .|.++|++||+.+ +.++++++..+.+|++...
T Consensus 178 -~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (237)
T PRK11614 178 -DTIEQLRE-QGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218 (237)
T ss_pred -HHHHHHHH-CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEee
Confidence 45556665 4899999999975 5678888777777766543
No 105
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.9e-17 Score=177.84 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=113.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------------hhccccccCCcc----ch-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------------------AQIGCFVPCDSA----TI- 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------------------aq~g~~vpa~~~----~~- 592 (813)
.++.++++|++.+|++++|+||||||||||+|+++++... .+...++|.... ..
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 102 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI 102 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcccc
Confidence 3588999999999999999999999999999999654210 111123333210 00
Q ss_pred --------------------hHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q psy5289 593 --------------------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFG 651 (813)
Q Consensus 593 --------------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~ 651 (813)
..+..++.++|+.+.......++|+++++...+++. +.+|+++|||||++|+|+.....
T Consensus 103 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 182 (280)
T PRK13633 103 VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE 182 (280)
T ss_pred HHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 012334566777777777788999888887666665 68999999999999999988877
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEE
Q psy5289 652 MACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 652 i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~ 695 (813)
+.. ++..+.++.|.++|++||+++....++++..+.+|.+...
T Consensus 183 l~~-~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~ 225 (280)
T PRK13633 183 VVN-TIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVME 225 (280)
T ss_pred HHH-HHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEe
Confidence 754 5556654358999999999888776777766777766544
No 106
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.73 E-value=2.2e-17 Score=171.24 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=106.4
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------------hhccccccCCcc---chhHH
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------------------AQIGCFVPCDSA---TISVV 595 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------------------aq~g~~vpa~~~---~~~~~ 595 (813)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..++.
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVE 93 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHH
Confidence 467899999999999999999999999999999654210 010123333221 11111
Q ss_pred -------------------HHHHHhc-CCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHH
Q psy5289 596 -------------------DQIFTRV-GAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMAC 654 (813)
Q Consensus 596 -------------------d~i~~~~-~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~ 654 (813)
..++..+ +..+........+|+++++...+++. +.+|+++|||||++|+|+.....+..
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 173 (222)
T cd03224 94 ENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 173 (222)
T ss_pred HHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHH
Confidence 1233334 23444455566788888877666654 68999999999999999987776644
Q ss_pred HHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEE
Q psy5289 655 SIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 655 ~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~ 694 (813)
++..+.+ .++++|++||+.+. ..+++++..+.+|++..
T Consensus 174 -~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (222)
T cd03224 174 -AIRELRD-EGVTILLVEQNARFALEIADRAYVLERGRVVL 212 (222)
T ss_pred -HHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE
Confidence 5555665 58999999999875 56788877777777653
No 107
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.2e-17 Score=181.99 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=115.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------hhccccccCCcc---c
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------AQIGCFVPCDSA---T 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------aq~g~~vpa~~~---~ 591 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .++ .++|.... .
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i-g~v~q~~~l~~~ 96 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQI-GMIFQHFNLLSS 96 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCE-EEEeCCCccCCC
Confidence 3578899999999999999999999999999999654210 112 23333211 0
Q ss_pred hhH---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 592 ISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 592 ~~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
.++ +..++..+|+.+......+++|+++++...+++. +.+|+++||||||+|+|+...
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~ 176 (343)
T PRK11153 97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 111 1234566777766677778899888887766654 689999999999999999887
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
..+.. ++..+.++.|.++|++||+++.. .+++++..+.+|++.....
T Consensus 177 ~~l~~-~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~ 224 (343)
T PRK11153 177 RSILE-LLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224 (343)
T ss_pred HHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 77644 55555543589999999998765 5789888888888865443
No 108
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2e-17 Score=177.52 Aligned_cols=155 Identities=20% Similarity=0.168 Sum_probs=112.3
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc----chh--
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA----TIS-- 593 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~----~~~-- 593 (813)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVE 100 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHH
Confidence 478899999999999999999999999999999754210 001123333210 011
Q ss_pred -------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q psy5289 594 -------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMA 653 (813)
Q Consensus 594 -------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~ 653 (813)
.+..++..+|+.+.......++|+++++...+++ .+.+|+++|||||++|+|+.....+.
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~ 180 (279)
T PRK13650 101 DDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180 (279)
T ss_pred HHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 1233556667776677777889988877665555 46899999999999999998776664
Q ss_pred HHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEE
Q psy5289 654 CSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 654 ~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~ 695 (813)
.++..+.++.|.++|++||+.+....++++..+.+|++...
T Consensus 181 -~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~ 221 (279)
T PRK13650 181 -KTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVEST 221 (279)
T ss_pred -HHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 45555665348999999999887777887777777776543
No 109
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.73 E-value=2.8e-17 Score=174.52 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=109.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc---chhH-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA---TISV- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~---~~~~- 594 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... ...-.++|.... ..++
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 94 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVE 94 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHH
Confidence 4578899999999999999999999999999999754210 011123332211 0111
Q ss_pred --------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCC-------CCcEEEEeCCCCCCChh
Q psy5289 595 --------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCT-------ENSLVIIDELGRGTSTF 647 (813)
Q Consensus 595 --------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~-------~~~LlllDEp~~Gtd~~ 647 (813)
+..++..+++.+........+|+++++...+++... +|+++|||||++|+|+.
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~ 174 (258)
T PRK13548 95 EVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLA 174 (258)
T ss_pred HHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHH
Confidence 223455566666666667788888888777776643 89999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEE
Q psy5289 648 DGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 648 d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~ 693 (813)
....+.. ++..+.+..|.++|++||+++.. .+++++..+.+|++.
T Consensus 175 ~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 220 (258)
T PRK13548 175 HQHHVLR-LARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV 220 (258)
T ss_pred HHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE
Confidence 8777755 44445522588999999998765 478877667666554
No 110
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.73 E-value=2.6e-17 Score=174.65 Aligned_cols=168 Identities=14% Similarity=0.113 Sum_probs=116.3
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--------------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------------------- 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-------------------- 579 (813)
+.+.+++....+ +...+.++++|++.+|++++|+||||||||||+|++++.....
T Consensus 4 ~~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (257)
T PRK10619 4 NKLNVIDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78 (257)
T ss_pred ccEEEeeeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccc
Confidence 456666654322 1245888999999999999999999999999999996542110
Q ss_pred -------------hccccccCCcc---chhHH----------------------HHHHHhcCCchhH-hhccchhHHHHH
Q psy5289 580 -------------QIGCFVPCDSA---TISVV----------------------DQIFTRVGAADSQ-YRGISTFMMEMK 620 (813)
Q Consensus 580 -------------q~g~~vpa~~~---~~~~~----------------------d~i~~~~~~~d~~-~~~~s~f~~e~~ 620 (813)
+.-.++|.... ..++. ..++.++|+.+.. ....+.+|++++
T Consensus 79 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~ 158 (257)
T PRK10619 79 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQ 158 (257)
T ss_pred cccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHH
Confidence 00122332211 01111 2345556665543 556678888888
Q ss_pred HHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEE
Q psy5289 621 ETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSA 694 (813)
Q Consensus 621 ~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~ 694 (813)
+...+++. +.+|+++|||||++|+|+.....+.. ++..+.+ .|+++|++||+.+... +++++..+.+|++..
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 232 (257)
T PRK10619 159 QRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 232 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 77666655 68999999999999999988777654 5555665 5899999999987665 688877777776653
No 111
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.73 E-value=2.7e-17 Score=175.64 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=109.6
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------------hhccccccCCcc---ch
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------------AQIGCFVPCDSA---TI 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------------aq~g~~vpa~~~---~~ 592 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.++|.... ..
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 99 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM 99 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence 4678899999999999999999999999999999754210 011123333211 11
Q ss_pred hHH----------------------HHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 593 SVV----------------------DQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 593 ~~~----------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
++. ..++.++++.+......+++|+++++...+++. +.+|+++|||||++|+|+...
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 179 (269)
T PRK11831 100 NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM 179 (269)
T ss_pred CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 111 123455666655666678899888887766655 689999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~ 694 (813)
..+.. ++..+.+..|.++|++||+.+. ..+++++..+.+|++..
T Consensus 180 ~~l~~-~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 224 (269)
T PRK11831 180 GVLVK-LISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA 224 (269)
T ss_pred HHHHH-HHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE
Confidence 76655 4455554348899999999654 45788776677776643
No 112
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.73 E-value=2.3e-17 Score=172.11 Aligned_cols=151 Identities=16% Similarity=0.128 Sum_probs=107.6
Q ss_pred cccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh---------------ccccccCCcc---chhH----------
Q psy5289 543 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ---------------IGCFVPCDSA---TISV---------- 594 (813)
Q Consensus 543 n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq---------------~g~~vpa~~~---~~~~---------- 594 (813)
++++|++.+|++++|+||||||||||+|+++++..... ...++|.... ..++
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999975432100 0013332211 0111
Q ss_pred -------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q psy5289 595 -------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIAREL 660 (813)
Q Consensus 595 -------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l 660 (813)
+..++.++++.+......+.+|+++++...+++. +.+|+++|||||++|+|+.....+... +..+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~ 160 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE-LMQI 160 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH-HHHH
Confidence 2234555666666666778888888877666655 689999999999999999887777554 4444
Q ss_pred HhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEE
Q psy5289 661 ASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 661 ~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~ 694 (813)
.++.|+++|++||+.+. ..+++++..+.+|++..
T Consensus 161 ~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 195 (230)
T TIGR01184 161 WEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN 195 (230)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec
Confidence 44358899999999865 56788888788887764
No 113
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=3e-17 Score=169.00 Aligned_cols=151 Identities=19% Similarity=0.273 Sum_probs=107.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhccccccCCcc---chhH--
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQIGCFVPCDSA---TISV-- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~g~~vpa~~~---~~~~-- 594 (813)
..+.++++|++.+| +++|+||||||||||+|+++++... .+.-.++|.... ..++
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVRE 91 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHH
Confidence 35788999999999 9999999999999999999754210 011123333221 0111
Q ss_pred -------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHH
Q psy5289 595 -------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMAC 654 (813)
Q Consensus 595 -------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~ 654 (813)
++.++..+++.+........+|+++++...+++. +.+|+++|||||++|+|+.....+ .
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~ 170 (211)
T cd03264 92 FLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF-R 170 (211)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 1234555666665666677888888776666554 689999999999999999877666 4
Q ss_pred HHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEE
Q psy5289 655 SIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 655 ~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~ 693 (813)
.+++.+.+ +.++|++||+.+.. .+++++..+.+|++.
T Consensus 171 ~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~i~ 208 (211)
T cd03264 171 NLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLV 208 (211)
T ss_pred HHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 45666664 58999999998766 578887777777654
No 114
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.4e-17 Score=177.25 Aligned_cols=155 Identities=18% Similarity=0.135 Sum_probs=112.6
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh-----------------------ccccccCCcc----ch
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-----------------------IGCFVPCDSA----TI 592 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-----------------------~g~~vpa~~~----~~ 592 (813)
.+.++++|++.+|++++|+||||||||||+|+++++....+ ...++|.... ..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 57889999999999999999999999999999976532111 0123332210 01
Q ss_pred hH---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 593 SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 593 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
++ ++.++..+|+.+........+|+++++...+++. +.+|+++|||||++|+|+....
T Consensus 101 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~ 180 (282)
T PRK13640 101 TVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE 180 (282)
T ss_pred CHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence 11 2234555666666666778888888877666654 6899999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~ 695 (813)
.+.. ++..+.+..|.++|++||+++....++++..+.+|.+...
T Consensus 181 ~l~~-~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 181 QILK-LIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQ 224 (282)
T ss_pred HHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence 7755 5555554348999999999888888887777777776643
No 115
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2e-17 Score=177.53 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=113.6
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc----chhH
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA----TISV 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~----~~~~ 594 (813)
.++.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv 99 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATV 99 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccH
Confidence 3578899999999999999999999999999999754210 001123332210 0111
Q ss_pred ---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHH
Q psy5289 595 ---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGM 652 (813)
Q Consensus 595 ---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i 652 (813)
+..++..+|+.+.+......+|+++++...+++. +.+|+|+|||||++|+|+.....+
T Consensus 100 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 179 (279)
T PRK13635 100 QDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV 179 (279)
T ss_pred HHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 2345566677777777788899888887666665 689999999999999999887776
Q ss_pred HHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEE
Q psy5289 653 ACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 653 ~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~ 695 (813)
.. ++..+.++.|.++|++||+++....++++..+.+|.+.+.
T Consensus 180 ~~-~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~ 221 (279)
T PRK13635 180 LE-TVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEE 221 (279)
T ss_pred HH-HHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 44 5556665348999999999887777787777777776543
No 116
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.73 E-value=2.6e-17 Score=171.36 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=109.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh-----hhh----------------------hccccccCCcc-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV-----FLA----------------------QIGCFVPCDSA- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~-----~la----------------------q~g~~vpa~~~- 590 (813)
..+.++++|++.+|++++|+||||||||||+|+++++. ... +.-.++|....
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 92 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNP 92 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchh
Confidence 35788999999999999999999999999999997764 210 00113333211
Q ss_pred -chhH----------------------HHHHHHhcCCchhHhhc--cchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q psy5289 591 -TISV----------------------VDQIFTRVGAADSQYRG--ISTFMMEMKETATVIKK-CTENSLVIIDELGRGT 644 (813)
Q Consensus 591 -~~~~----------------------~d~i~~~~~~~d~~~~~--~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gt 644 (813)
..++ +..++..+|+.+..... ...+|+++++...+++. +.+|+++|||||++|+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 172 (227)
T cd03260 93 FPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172 (227)
T ss_pred ccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 0111 12344555665554454 37899888887766665 6899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 645 STFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 645 d~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
|+.....+.. ++..+.+ . .++|++||+.+.. .+++++..+.+|++...
T Consensus 173 D~~~~~~l~~-~l~~~~~-~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 173 DPISTAKIEE-LIAELKK-E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred CHHHHHHHHH-HHHHHhh-C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 9987776644 5555665 3 8999999998764 57888888888877644
No 117
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.73 E-value=1.4e-17 Score=183.83 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=116.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhccccccCCccc--------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQIGCFVPCDSAT-------- 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~g~~vpa~~~~-------- 591 (813)
..+.++++|++.+|++++|+||||||||||||+|+++... ..+ .++|.+.+-
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i-~~v~Q~~~l~p~~tv~e 93 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKV-GFVFQHYALFRHMTVFD 93 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCE-EEEecCcccCCCCcHHH
Confidence 3578899999999999999999999999999999754211 011 122221110
Q ss_pred --------------------hhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 592 --------------------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 592 --------------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
...+..++..+++.+...+....+|++++|...+++. +.+|+++|||||++|+|+....
T Consensus 94 ni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~ 173 (353)
T PRK10851 94 NIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRK 173 (353)
T ss_pred HHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 0122345667777777777788899988887766665 6899999999999999998887
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEEEEE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~~~~ 697 (813)
.+.. ++..+.++.|.++|++|||.+. ..+++++..+.+|++....+
T Consensus 174 ~l~~-~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~ 220 (353)
T PRK10851 174 ELRR-WLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220 (353)
T ss_pred HHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 7755 4545555358999999999765 56889888889998876543
No 118
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.2e-17 Score=176.56 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=110.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------------------hhccccccCCcc----ch
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------------------AQIGCFVPCDSA----TI 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----------------------aq~g~~vpa~~~----~~ 592 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .+...++|.... ..
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYT 93 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccc
Confidence 4578899999999999999999999999999999654210 011123443311 00
Q ss_pred hH---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 593 SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 593 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
.+ ++.++..+|+.+......+.+|+++++...+++. +.+|+++|||||++|+|+....
T Consensus 94 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~ 173 (271)
T PRK13638 94 DIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRT 173 (271)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 01 1123445565555556677888888877666654 6899999999999999998777
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
.+.. ++..+.+ .|.++|++||+.+.. .+++++..+.+|++...
T Consensus 174 ~l~~-~l~~~~~-~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~ 217 (271)
T PRK13638 174 QMIA-IIRRIVA-QGNHVIISSHDIDLIYEISDAVYVLRQGQILTH 217 (271)
T ss_pred HHHH-HHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 7644 5555655 488999999998766 57888777778777543
No 119
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.73 E-value=2.8e-17 Score=175.01 Aligned_cols=154 Identities=16% Similarity=0.112 Sum_probs=110.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----------------------------hccccccCCcc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----------------------------QIGCFVPCDSA 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----------------------------q~g~~vpa~~~ 590 (813)
..+.++++|++.+|++++|+||||||||||+|+|+++.... +.-.++|....
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 45788999999999999999999999999999997653210 00123333211
Q ss_pred ---chhH-----------------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEE
Q psy5289 591 ---TISV-----------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVII 637 (813)
Q Consensus 591 ---~~~~-----------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~Llll 637 (813)
..++ +..++.++|+.+........+|+++++...+++ .+.+|+|+||
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 176 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILA 176 (262)
T ss_pred cccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEe
Confidence 0111 223455567666666777788888877666655 4689999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEE
Q psy5289 638 DELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVS 693 (813)
Q Consensus 638 DEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~ 693 (813)
|||++|+|+.....+.. +++.+.++.|.++|++||+.+. ..+++++..+.+|++.
T Consensus 177 DEPt~~LD~~~~~~l~~-~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~ 232 (262)
T PRK09984 177 DEPIASLDPESARIVMD-TLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF 232 (262)
T ss_pred cCccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999988777755 5555554348999999999875 5678877666666654
No 120
>PRK10908 cell division protein FtsE; Provisional
Probab=99.73 E-value=3e-17 Score=170.38 Aligned_cols=153 Identities=16% Similarity=0.091 Sum_probs=109.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------------hhccccccCCcc---ch
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------------AQIGCFVPCDSA---TI 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------------aq~g~~vpa~~~---~~ 592 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDR 94 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccc
Confidence 3578899999999999999999999999999999654210 011123333211 01
Q ss_pred hH---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 593 SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 593 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
++ +..++.++++.+......+.+|+++++...+++. +.+|+++|||||++|+|+....
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 174 (222)
T PRK10908 95 TVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSE 174 (222)
T ss_pred cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 11 1234566676666667778899888887666665 5899999999999999998777
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~ 693 (813)
.+.. ++..+.+ .+.++|++||+.+.. .+++++..+.+|++.
T Consensus 175 ~l~~-~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 175 GILR-LFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHH-HHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 7755 5555555 488999999998765 467777667776653
No 121
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.72 E-value=2e-17 Score=166.49 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=118.4
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh-----ccc----------------cccCCcc-----c--
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-----IGC----------------FVPCDSA-----T-- 591 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-----~g~----------------~vpa~~~-----~-- 591 (813)
.+.|+|+|++.+|++++|+|++||||||+.|+++++.-..+ -|. +|+.+.. .
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 58899999999999999999999999999999976532111 010 1111100 0
Q ss_pred --------hhH---------HHHHHHhcCCchhH-hhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHH
Q psy5289 592 --------ISV---------VDQIFTRVGAADSQ-YRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGM 652 (813)
Q Consensus 592 --------~~~---------~d~i~~~~~~~d~~-~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i 652 (813)
+.+ ...++..+|+.... .+....||++.+|+..|+++ +.+|+++|+|||++++|..-...+
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 001 34577788876654 45567899888877776665 689999999999999999776665
Q ss_pred HHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEEECC
Q psy5289 653 ACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQED 699 (813)
Q Consensus 653 ~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~~~~ 699 (813)
+.++..+.++.+.+.||+|||..+.. +|+++..+.+|++.......
T Consensus 181 -lnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~ 227 (252)
T COG1124 181 -LNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTE 227 (252)
T ss_pred -HHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechh
Confidence 66777888777899999999988876 78998889998887655433
No 122
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.3e-17 Score=176.31 Aligned_cols=155 Identities=15% Similarity=0.067 Sum_probs=110.4
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc----chh--
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA----TIS-- 593 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~----~~~-- 593 (813)
++.++++|++.+|++++|+||||||||||+|+|+++... .+.-.++|.... ...
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~ 102 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVK 102 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHH
Confidence 578899999999999999999999999999999754210 001123333211 000
Q ss_pred -------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHH
Q psy5289 594 -------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMA 653 (813)
Q Consensus 594 -------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~ 653 (813)
.+..++..+++.+........+|+++++...+++. +.+|+++|||||++|+|+.....+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~ 182 (269)
T PRK13648 103 YDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLL 182 (269)
T ss_pred HHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 12234556666666666777888888776666554 6899999999999999998877775
Q ss_pred HHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEE
Q psy5289 654 CSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 654 ~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~ 695 (813)
. ++..+.+..|.++|++||+.+....++++..+.+|++...
T Consensus 183 ~-~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 183 D-LVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKE 223 (269)
T ss_pred H-HHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEe
Confidence 5 4445554348899999999877766777766777766543
No 123
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.72 E-value=2.9e-17 Score=172.49 Aligned_cols=154 Identities=14% Similarity=0.158 Sum_probs=110.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------------------hhccccccCCcc---chh
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------------------AQIGCFVPCDSA---TIS 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----------------------aq~g~~vpa~~~---~~~ 593 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..+
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLT 93 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCc
Confidence 4578899999999999999999999999999999754210 001123332211 001
Q ss_pred ----------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 594 ----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 594 ----------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
.+..++.++|+.+......+.+|+++++...+++. +.+|+++|||||++|+|+....
T Consensus 94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~ 173 (240)
T PRK09493 94 ALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRH 173 (240)
T ss_pred HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 11234566676666667778888888776665554 6899999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
.+.. ++..+.+ .|.++|++||+.+.. .+++++..+.+|++..
T Consensus 174 ~l~~-~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 216 (240)
T PRK09493 174 EVLK-VMQDLAE-EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE 216 (240)
T ss_pred HHHH-HHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 7755 5555665 488999999998766 5788877777777653
No 124
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.4e-17 Score=165.99 Aligned_cols=143 Identities=20% Similarity=0.201 Sum_probs=94.6
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhcccc-c---cCCc------cchhHH---HHHHHhcCCch
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCF-V---PCDS------ATISVV---DQIFTRVGAAD 606 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~-v---pa~~------~~~~~~---d~i~~~~~~~d 606 (813)
.+.++++|++.+|++++|+||||||||||+|+++++... ..|.. + +... ..++++ ..++..+...+
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRE 92 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHH
Confidence 478899999999999999999999999999999765321 11211 0 0000 001100 00111122223
Q ss_pred hHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCC
Q psy5289 607 SQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVI 684 (813)
Q Consensus 607 ~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~ 684 (813)
++. +|+++++...+++ .+.+|+++|+|||++|+|+.....+.. +++.+.+ .|.++|++||+.+... .++++
T Consensus 93 ~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~-~g~tiii~th~~~~~~~~~d~i 165 (173)
T cd03230 93 NLK-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWE-LLRELKK-EGKTILLSSHILEEAERLCDRV 165 (173)
T ss_pred Hhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHH-CCCEEEEECCCHHHHHHhCCEE
Confidence 332 6666666554444 578999999999999999988777755 5555665 3889999999987655 77766
Q ss_pred CceEee
Q psy5289 685 PTFRNV 690 (813)
Q Consensus 685 ~~v~~~ 690 (813)
..+.+|
T Consensus 166 ~~l~~g 171 (173)
T cd03230 166 AILNNG 171 (173)
T ss_pred EEEeCC
Confidence 555554
No 125
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.72 E-value=3.5e-17 Score=173.19 Aligned_cols=155 Identities=16% Similarity=0.115 Sum_probs=109.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------------------------hhccccc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------------------------------AQIGCFV 585 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------------------------------aq~g~~v 585 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v 92 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMV 92 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEE
Confidence 3578899999999999999999999999999999754210 0111223
Q ss_pred cCCcc---chhH----------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeC
Q psy5289 586 PCDSA---TISV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDE 639 (813)
Q Consensus 586 pa~~~---~~~~----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDE 639 (813)
|.... ..++ +..++.++|+.+.+......+|+++++...+++. +.+|+++||||
T Consensus 93 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 172 (252)
T TIGR03005 93 FQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDE 172 (252)
T ss_pred ecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 32211 0111 1234555666655666677888888776665554 68999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 640 LGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 640 p~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
|++|+|+.....+.. ++..+.+..|.++|++||+.+.. .+++++..+.+|.+..
T Consensus 173 P~~~LD~~~~~~l~~-~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 173 VTSALDPELVGEVLN-VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 999999987776655 44445442489999999998765 6788877777777643
No 126
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.72 E-value=2.1e-17 Score=175.29 Aligned_cols=153 Identities=23% Similarity=0.236 Sum_probs=109.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc---chhH-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA---TISV- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~---~~~~- 594 (813)
..+.++++|++.+|++++|+||||||||||+|+|+++... .+.-.++|.... ..++
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVR 93 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHH
Confidence 4678899999999999999999999999999999754210 011123333210 0111
Q ss_pred ------------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 595 ------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 595 ------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
+...+.++++.+........+|+++++...+++. +.+|+++|||||++|+|+...
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 173 (256)
T TIGR03873 94 DVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQ 173 (256)
T ss_pred HHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHH
Confidence 2234455666655666677888888876666554 689999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~ 693 (813)
..+.. ++..+.+ .|.++|++||+++.. .+++++..+.+|++.
T Consensus 174 ~~l~~-~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (256)
T TIGR03873 174 LETLA-LVRELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRVV 216 (256)
T ss_pred HHHHH-HHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEE
Confidence 76644 5556665 488999999998776 688887777777654
No 127
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.72 E-value=1.3e-17 Score=180.08 Aligned_cols=174 Identities=17% Similarity=0.143 Sum_probs=125.8
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh--------ccccccC----
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ--------IGCFVPC---- 587 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq--------~g~~vpa---- 587 (813)
..+.|++..+-+ +...+.+|++|++.+|+++.|.||+||||||+||+||++.-... --..+|+
T Consensus 4 ~~l~i~~v~k~y-----g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ 78 (352)
T COG3842 4 PALEIRNVSKSF-----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRP 78 (352)
T ss_pred ceEEEEeeeeec-----CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcc
Confidence 346666644332 34678899999999999999999999999999999987532111 0011222
Q ss_pred ------Ccc---ch----------------------hHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEE
Q psy5289 588 ------DSA---TI----------------------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLV 635 (813)
Q Consensus 588 ------~~~---~~----------------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~Ll 635 (813)
+.| ++ ..+.+.+..+++.+...+..+.+|++++|...++++ +.+|.++
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vL 158 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVL 158 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchh
Confidence 111 11 123445667777777778888899888876665554 6999999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEECC
Q psy5289 636 IIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQED 699 (813)
Q Consensus 636 llDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~~~ 699 (813)
|||||.+.+|..-+..+...+.+ +.++.|.|+|++|||.+.+ .++|++..+.+|++.-...+.
T Consensus 159 LLDEPlSaLD~kLR~~mr~Elk~-lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ 222 (352)
T COG3842 159 LLDEPLSALDAKLREQMRKELKE-LQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPE 222 (352)
T ss_pred hhcCcccchhHHHHHHHHHHHHH-HHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHH
Confidence 99999999999877777555554 4444799999999997655 588999989999887665543
No 128
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.72 E-value=3.7e-17 Score=168.55 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=109.0
Q ss_pred ccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------hhccccccCCcc---chh-------
Q psy5289 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------AQIGCFVPCDSA---TIS------- 593 (813)
Q Consensus 542 ~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------aq~g~~vpa~~~---~~~------- 593 (813)
..+++|++.+|++++|+||||||||||+|+++++... .....++|.... ..+
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~ 93 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGL 93 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHh
Confidence 4589999999999999999999999999999754211 011123333211 011
Q ss_pred --------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHH
Q psy5289 594 --------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIAR 658 (813)
Q Consensus 594 --------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~ 658 (813)
.+..++..+|+.+........+|+++++...+++ .+.+|+++|||||++|+|+.....+.. +++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~-~l~ 172 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLA-LVK 172 (213)
T ss_pred HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHH
Confidence 1223556667666666667788888887766665 468999999999999999988777755 454
Q ss_pred HHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 659 ELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 659 ~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
.+.++.+.++|++||+.+.. .+++++..+.+|++...
T Consensus 173 ~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~ 210 (213)
T TIGR01277 173 QLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVV 210 (213)
T ss_pred HHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEe
Confidence 55543488999999998764 57888877888777543
No 129
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.72 E-value=3.2e-17 Score=171.02 Aligned_cols=153 Identities=13% Similarity=0.076 Sum_probs=106.4
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh---hcc-------------------ccccCCcc-----chh
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA---QIG-------------------CFVPCDSA-----TIS 593 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la---q~g-------------------~~vpa~~~-----~~~ 593 (813)
+.++++|++.+|++++|+||||||||||+|+++++.... ..| .++|.+.. ..+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 357899999999999999999999999999997764320 011 12332210 011
Q ss_pred H---------------------HHHHHHhcCCc---hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q psy5289 594 V---------------------VDQIFTRVGAA---DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 594 ~---------------------~d~i~~~~~~~---d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d 648 (813)
+ +..++.++++. +......+.+|+++++...+++. +.+|+++|||||++|+|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 1 12234455554 34455667888888776665554 68999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
...+.. ++..+.++.|.++|++||+.+.. .+++++..+.+|.+..
T Consensus 161 ~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 206 (230)
T TIGR02770 161 QARVLK-LLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE 206 (230)
T ss_pred HHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 776644 44455542488999999997665 5788877777777654
No 130
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.72 E-value=5.4e-17 Score=168.74 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=109.9
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hh
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQ 580 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq 580 (813)
.+.+++....+ +...+.++++|++.+|++++|+||||||||||+|+++++... .+
T Consensus 7 ~i~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (225)
T PRK10247 7 LLQLQNVGYLA-----GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ 81 (225)
T ss_pred eEEEeccEEee-----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHh
Confidence 46666654332 124688999999999999999999999999999999764210 01
Q ss_pred ccccccCCccc--hh-------------------HHHHHHHhcCCch-hHhhccchhHHHHHHHHHHHHh-CCCCcEEEE
Q psy5289 581 IGCFVPCDSAT--IS-------------------VVDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKK-CTENSLVII 637 (813)
Q Consensus 581 ~g~~vpa~~~~--~~-------------------~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-~~~~~Llll 637 (813)
...++|....- .+ .+..++..+++.+ .......++|+++++...+.+. +.+|+++||
T Consensus 82 ~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (225)
T PRK10247 82 QVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLL 161 (225)
T ss_pred ccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11233332110 01 1234566677643 4566677888887776655554 689999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCce
Q psy5289 638 DELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTF 687 (813)
Q Consensus 638 DEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v 687 (813)
|||++|+|+.....+.. ++..+.++.|.++|++||+.+....++++..+
T Consensus 162 DEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l 210 (225)
T PRK10247 162 DEITSALDESNKHNVNE-IIHRYVREQNIAVLWVTHDKDEINHADKVITL 210 (225)
T ss_pred eCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECChHHHHhCCEEEEE
Confidence 99999999987666654 44445443588999999998877766655444
No 131
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.72 E-value=4e-17 Score=171.75 Aligned_cols=156 Identities=18% Similarity=0.200 Sum_probs=107.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh---hh-------------------hhcc-ccccCCccc---h
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV---FL-------------------AQIG-CFVPCDSAT---I 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~---~l-------------------aq~g-~~vpa~~~~---~ 592 (813)
..+.++++|++.+|++++|+||||||||||+|+++++. .. ...+ .++|....- .
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 35778999999999999999999999999999997752 10 0111 233332110 0
Q ss_pred h----------------------------HHHHHHHhcCCchh-Hhhccc-hhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q psy5289 593 S----------------------------VVDQIFTRVGAADS-QYRGIS-TFMMEMKETATVIKK-CTENSLVIIDELG 641 (813)
Q Consensus 593 ~----------------------------~~d~i~~~~~~~d~-~~~~~s-~f~~e~~~~~~il~~-~~~~~LlllDEp~ 641 (813)
+ .+..++.++++.+. ...... .+|+++++...+++. +.+|+++|||||+
T Consensus 93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 172 (243)
T TIGR01978 93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEID 172 (243)
T ss_pred CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 0 11223444555432 334444 488888776665554 6899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-h-cCCCCceEeeEEEEEE
Q psy5289 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-L-SRVIPTFRNVQVSALE 696 (813)
Q Consensus 642 ~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~-~~~~~~v~~~~~~~~~ 696 (813)
+|+|+.....+.. ++..+.+ .|.++|++||+.+... . ++++..+.+|++....
T Consensus 173 ~~LD~~~~~~l~~-~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 173 SGLDIDALKIVAE-GINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred ccCCHHHHHHHHH-HHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 9999988777754 5555555 5889999999988775 4 6777777788775443
No 132
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.72 E-value=2.8e-17 Score=166.34 Aligned_cols=137 Identities=20% Similarity=0.179 Sum_probs=98.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------------------hhccccccCCcc----ch
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------------------AQIGCFVPCDSA----TI 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----------------------aq~g~~vpa~~~----~~ 592 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 4578899999999999999999999999999999654210 011123343320 00
Q ss_pred hH---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 593 SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 593 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
++ +..++..+++.+......+.+|+++++...+++. +.+|+++|||||++|+|+....
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 164 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGRE 164 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 11 1234556677666667778888888876666654 6899999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHH
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEI 677 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el 677 (813)
.+.. ++..+.+ .|.++|++||+.++
T Consensus 165 ~~~~-~l~~~~~-~~~tili~sH~~~~ 189 (190)
T TIGR01166 165 QMLA-ILRRLRA-EGMTVVISTHDVDL 189 (190)
T ss_pred HHHH-HHHHHHH-cCCEEEEEeecccc
Confidence 7644 5555555 48999999999764
No 133
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=3.4e-17 Score=175.67 Aligned_cols=155 Identities=18% Similarity=0.161 Sum_probs=112.8
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------------hhccccccCCc----cchhH
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------------------AQIGCFVPCDS----ATISV 594 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------------------aq~g~~vpa~~----~~~~~ 594 (813)
.+.++++|++.+|++++|+||||||||||+|+++++... .++ .++|... ...++
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i-~~v~q~~~~~~~~~tv 96 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV-GLVFQNPDDQIFSPTV 96 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe-EEEecCcccccccccH
Confidence 478899999999999999999999999999999754210 112 2333321 01111
Q ss_pred ---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHH
Q psy5289 595 ---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGM 652 (813)
Q Consensus 595 ---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i 652 (813)
++.++.++++.+........+|+++++...+++. +.+|+++|||||++|+|+.....+
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l 176 (277)
T PRK13652 97 EQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176 (277)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 2334556677666677778888888876666554 689999999999999999877766
Q ss_pred HHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEE
Q psy5289 653 ACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 653 ~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~ 696 (813)
.. ++..+.++.|.++|++||+.+.. ++++++..+.+|++....
T Consensus 177 ~~-~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g 220 (277)
T PRK13652 177 ID-FLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYG 220 (277)
T ss_pred HH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEEC
Confidence 44 55555543489999999998765 688988878888776543
No 134
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.2e-17 Score=171.42 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=109.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCccc--hh---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSAT--IS--- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~~--~~--- 593 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+...++|.+..- .+
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e 95 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKD 95 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHH
Confidence 4578899999999999999999999999999999754210 0011233332110 00
Q ss_pred --------------HHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q psy5289 594 --------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIA 657 (813)
Q Consensus 594 --------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~ 657 (813)
....++.++++. +........+|+++++...+++ .+.+|+++|||||++|+|+.....+.. ++
T Consensus 96 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l 174 (241)
T PRK14250 96 NIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEE-LI 174 (241)
T ss_pred HHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HH
Confidence 123355667775 3455667788888777666555 468999999999999999987666644 55
Q ss_pred HHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 658 RELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 658 ~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
..+.+..|.++|++||+.+.. .+++++..+.+|++..
T Consensus 175 ~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (241)
T PRK14250 175 VKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE 212 (241)
T ss_pred HHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence 555543488999999998764 5788877777777653
No 135
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.1e-17 Score=169.71 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=100.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-hhccc-----------------cccCCccchhHHHHHHH
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIGC-----------------FVPCDSATISVVDQIFT 600 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-aq~g~-----------------~vpa~~~~~~~~d~i~~ 600 (813)
..+.++++|++.+|++++|+||||||||||+|++++.... ...|. ++|... .++.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~-------~~~~ 92 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQD-------VHSP 92 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccC-------cccc
Confidence 4578899999999999999999999999999999865321 12221 122111 1122
Q ss_pred hcCCchhHhhcc--chhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChH-
Q psy5289 601 RVGAADSQYRGI--STFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHE- 676 (813)
Q Consensus 601 ~~~~~d~~~~~~--s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~e- 676 (813)
.+...+++..+. ..+|+++++...+++ .+.+|+++|+|||++|+|+.....+.. ++..+.+ .|+++|++||+.+
T Consensus 93 ~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~-~l~~~~~-~~~tiiivtH~~~~ 170 (192)
T cd03232 93 NLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVR-FLKKLAD-SGQAILCTIHQPSA 170 (192)
T ss_pred CCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHH-HHHHHHH-cCCEEEEEEcCChH
Confidence 222333332211 167777777665554 468999999999999999987776644 5556665 5899999999976
Q ss_pred -HHhhcCCCCceEe-eEEE
Q psy5289 677 -IALLSRVIPTFRN-VQVS 693 (813)
Q Consensus 677 -l~~~~~~~~~v~~-~~~~ 693 (813)
+...++++..+.+ |++.
T Consensus 171 ~~~~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 171 SIFEKFDRLLLLKRGGKTV 189 (192)
T ss_pred HHHhhCCEEEEEcCCCeEE
Confidence 3677887766666 5554
No 136
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=3.4e-17 Score=176.51 Aligned_cols=154 Identities=14% Similarity=0.082 Sum_probs=111.6
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------hhccccccCCc----cc
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------AQIGCFVPCDS----AT 591 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------aq~g~~vpa~~----~~ 591 (813)
.+.++++|++.+|++++|+||||||||||||+|+++... .+.-.++|... ..
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 100 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFE 100 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhcc
Confidence 578899999999999999999999999999999754210 01112344321 01
Q ss_pred hhH---------------------HHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q psy5289 592 ISV---------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 592 ~~~---------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d 648 (813)
.++ +..++..+|+. +......+++|++|++...+++. +.+|+++|||||++|+|+..
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~ 180 (287)
T PRK13641 101 NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG 180 (287)
T ss_pred chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 111 12334556664 44566678899888887666655 68999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
...+ ..++..+.+ .|.++|++||+.+.+ .+++++..+.+|++...
T Consensus 181 ~~~l-~~~l~~l~~-~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 181 RKEM-MQLFKDYQK-AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHH-HHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 7766 445666665 589999999998765 68888877888877544
No 137
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.72 E-value=1.9e-17 Score=164.90 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=94.2
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccc-cccCCc-c---------chhHHH---HHHHhcCCc
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC-FVPCDS-A---------TISVVD---QIFTRVGAA 605 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~-~vpa~~-~---------~~~~~d---~i~~~~~~~ 605 (813)
.+.++++|++.+|++++|+||||||||||+|+++++.... .|. .+.... . .++++. .++. ....
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 93 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-SGRVRLDGADISQWDPNELGDHVGYLPQDDELFS-GSIA 93 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCEEcccCCHHHHHhheEEECCCCcccc-CcHH
Confidence 4677999999999999999999999999999997654321 221 111000 0 000000 0111 0112
Q ss_pred hhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCC
Q psy5289 606 DSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVI 684 (813)
Q Consensus 606 d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~ 684 (813)
+++ +|+++++...+++ .+.+|+++|||||++|+|+.....+.. ++..+.+ .|.++|++||+.+....++++
T Consensus 94 ~~l------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~-~~~tii~~sh~~~~~~~~d~v 165 (173)
T cd03246 94 ENI------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ-AIAALKA-AGATRIVIAHRPETLASADRI 165 (173)
T ss_pred HHC------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHH-HHHHHHh-CCCEEEEEeCCHHHHHhCCEE
Confidence 222 6767766655555 579999999999999999988777755 5555655 488999999998877777766
Q ss_pred CceEee
Q psy5289 685 PTFRNV 690 (813)
Q Consensus 685 ~~v~~~ 690 (813)
..+.+|
T Consensus 166 ~~l~~G 171 (173)
T cd03246 166 LVLEDG 171 (173)
T ss_pred EEEECC
Confidence 555544
No 138
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=4.8e-17 Score=180.75 Aligned_cols=170 Identities=14% Similarity=0.091 Sum_probs=122.5
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-------------------hc
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------------------QI 581 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-------------------q~ 581 (813)
.+.+++.+..+ +...+.++++|++..|++++|+||||||||||||+|+++.... .+
T Consensus 19 ~l~l~~v~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 19 LLEIRNLTKSF-----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred eEEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 46666665433 2246788999999999999999999999999999997653211 11
Q ss_pred cccccCCcc---chhH---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEE
Q psy5289 582 GCFVPCDSA---TISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVI 636 (813)
Q Consensus 582 g~~vpa~~~---~~~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~Lll 636 (813)
| +++.+.+ .+++ +..++..+++.+........+|++++|...+.+. +.+|+++|
T Consensus 94 g-~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 94 N-MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred E-EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1 2322211 1111 2345566677666667777888888876666554 68999999
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEEEEE
Q psy5289 637 IDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 637 lDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~~~~ 697 (813)
||||++|+|+.....+...+.+...+ .|.++|++|||.+. ..+++++..+.+|++....+
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~ 233 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDILER-VGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGE 233 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcC
Confidence 99999999998887776555554443 68999999999765 57899988888998876554
No 139
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.72 E-value=2.6e-17 Score=173.08 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=108.6
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------------hhccccccCCcc---chh-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------------------AQIGCFVPCDSA---TIS- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------------------aq~g~~vpa~~~---~~~- 593 (813)
..+.++++|++.+|++++|+||||||||||||++++.... .+.-.++|.... ..+
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTV 94 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCH
Confidence 4578899999999999999999999999999999754210 000112222110 001
Q ss_pred ----------------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q psy5289 594 ----------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGT 644 (813)
Q Consensus 594 ----------------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gt 644 (813)
.+..++.++|..+......+++|+++++...+++. +.+|+++|||||++|+
T Consensus 95 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~L 174 (242)
T TIGR03411 95 FENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174 (242)
T ss_pred HHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCC
Confidence 12334556676666666777888888776665554 6899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 645 STFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 645 d~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
|+.....+.. ++..+.+ +.++|++||+.+.. .+++++..+.+|++..
T Consensus 175 D~~~~~~l~~-~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~ 222 (242)
T TIGR03411 175 TDEETEKTAE-LLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLA 222 (242)
T ss_pred CHHHHHHHHH-HHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeEEe
Confidence 9988777644 5555554 57999999998766 5788877777777653
No 140
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=4e-17 Score=154.00 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=112.9
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh---------------------------hhhhccccccCC--
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV---------------------------FLAQIGCFVPCD-- 588 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~---------------------------~laq~g~~vpa~-- 588 (813)
...|.|+++|....|++++||||+|||||||+|++|.+. +.+|.....|..
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 468999999999999999999999999999999998653 222221111110
Q ss_pred ------------ccchhHHHHHHHhcCCchhHhh-ccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHH
Q psy5289 589 ------------SATISVVDQIFTRVGAADSQYR-GISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMAC 654 (813)
Q Consensus 589 ------------~~~~~~~d~i~~~~~~~d~~~~-~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~ 654 (813)
...-..+-.++.|++..+.+.. ....+|++.+|+..+++. ..-|.+++|||||+.+|+.....+-.
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~ 174 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEE 174 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHH
Confidence 0111123347788888776644 445566666665555554 58999999999999999999998866
Q ss_pred HHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEE
Q psy5289 655 SIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVS 693 (813)
Q Consensus 655 ~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~ 693 (813)
-|..++.+ .+..++++|||.+. ++.++++..+..||..
T Consensus 175 mi~~~v~~-q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 175 MIHRYVRE-QNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred HHHHHhhh-hceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 56666655 68999999999766 6788887777776654
No 141
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=3.6e-17 Score=172.03 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=108.3
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc---chhH--
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA---TISV-- 594 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~---~~~~-- 594 (813)
.+.++++|++.+|++++|+||||||||||||+++++... ...-.++|.... ..++
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE 94 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHH
Confidence 467899999999999999999999999999999654210 001123333211 0111
Q ss_pred -------------------HHHHHHhcCCch--hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHH
Q psy5289 595 -------------------VDQIFTRVGAAD--SQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGM 652 (813)
Q Consensus 595 -------------------~d~i~~~~~~~d--~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i 652 (813)
+..++.++++.. ......+.+|+++++...+++. +.+|+++|||||++|+|+.....+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 174 (242)
T cd03295 95 NIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174 (242)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 223456667664 4556677888888887666655 689999999999999999876666
Q ss_pred HHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEE
Q psy5289 653 ACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVS 693 (813)
Q Consensus 653 ~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~ 693 (813)
.. ++..+.+..|+++|++||+.+. ..+++++..+.+|++.
T Consensus 175 ~~-~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 215 (242)
T cd03295 175 QE-EFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV 215 (242)
T ss_pred HH-HHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 44 5555554248899999999764 5678887777777664
No 142
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.72 E-value=3.7e-17 Score=172.59 Aligned_cols=148 Identities=16% Similarity=0.137 Sum_probs=105.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh---------hccccccCCcc---c--hh-----------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA---------QIGCFVPCDSA---T--IS----------- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la---------q~g~~vpa~~~---~--~~----------- 593 (813)
..+.++++|++.+|++++|+||||||||||+|+|+++.... ..-.++|.... . ..
T Consensus 17 ~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~ 96 (251)
T PRK09544 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGT 96 (251)
T ss_pred ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccc
Confidence 35788999999999999999999999999999997653211 01123333211 0 01
Q ss_pred ---HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEE
Q psy5289 594 ---VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTL 669 (813)
Q Consensus 594 ---~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l 669 (813)
.+..++..+++.+.+......+|+++++...+++. +.+|+++|||||++|+|+.....+.. ++..+.+..|.++|
T Consensus 97 ~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~g~tii 175 (251)
T PRK09544 97 KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD-LIDQLRRELDCAVL 175 (251)
T ss_pred cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHHhcCCEEE
Confidence 12334567777777777788899888876666554 68999999999999999987777644 45455542488999
Q ss_pred EEcCChHHH-hhcCCCCce
Q psy5289 670 FATHFHEIA-LLSRVIPTF 687 (813)
Q Consensus 670 ~~TH~~el~-~~~~~~~~v 687 (813)
++||+.+.. .+++++..+
T Consensus 176 ivsH~~~~i~~~~d~i~~l 194 (251)
T PRK09544 176 MVSHDLHLVMAKTDEVLCL 194 (251)
T ss_pred EEecCHHHHHHhCCEEEEE
Confidence 999998765 567765444
No 143
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.72 E-value=2.7e-17 Score=167.82 Aligned_cols=155 Identities=17% Similarity=0.127 Sum_probs=104.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh-hhhhcccc-c---cCCc--------cchhHH---HHHHHhc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV-FLAQIGCF-V---PCDS--------ATISVV---DQIFTRV 602 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~-~laq~g~~-v---pa~~--------~~~~~~---d~i~~~~ 602 (813)
..+.++++|++.+|++++|+||||||||||+|++++.. .-...|.. + +... ..++++ ..++...
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGV 92 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCc
Confidence 35788999999999999999999999999999998763 11122211 0 0000 001110 0112222
Q ss_pred CCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh--
Q psy5289 603 GAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-- 679 (813)
Q Consensus 603 ~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-- 679 (813)
...+.+......+|+++++...+++. +.+|+++|||||++|+|+.....+ +.++..+.+ .++++|++||+++...
T Consensus 93 ~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~~L~~~~~-~~~tiii~sh~~~~~~~~ 170 (200)
T cd03217 93 KNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLV-AEVINKLRE-EGKSVLIITHYQRLLDYI 170 (200)
T ss_pred cHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHH-CCCEEEEEecCHHHHHHh
Confidence 22233323335788777776665554 689999999999999999877766 445555665 4889999999998887
Q ss_pred hcCCCCceEeeEEEEE
Q psy5289 680 LSRVIPTFRNVQVSAL 695 (813)
Q Consensus 680 ~~~~~~~v~~~~~~~~ 695 (813)
+++++..+.+|++...
T Consensus 171 ~~d~i~~l~~G~i~~~ 186 (200)
T cd03217 171 KPDRVHVLYDGRIVKS 186 (200)
T ss_pred hCCEEEEEECCEEEEE
Confidence 6888777777776543
No 144
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.72 E-value=1.5e-17 Score=167.06 Aligned_cols=147 Identities=17% Similarity=0.103 Sum_probs=96.7
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccc------cccC----C--ccchhHHH------HHHHhc
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC------FVPC----D--SATISVVD------QIFTRV 602 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~------~vpa----~--~~~~~~~d------~i~~~~ 602 (813)
+.++++|++.+|++++|+||||||||||+|++++..... .|. .+.. . ...++++. .++...
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA-SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence 788999999999999999999999999999997653211 111 0000 0 00111110 122223
Q ss_pred CCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChH-HHhh
Q psy5289 603 GAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHE-IALL 680 (813)
Q Consensus 603 ~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~e-l~~~ 680 (813)
...+++.... .+|+++++...+++ .+.+|+++|||||++|+|+.....+.. ++..+.+ .+.++|++||+.+ +..+
T Consensus 94 t~~e~l~~~~-~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~-~~~tiii~sh~~~~~~~~ 170 (182)
T cd03215 94 SVAENIALSS-LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYR-LIRELAD-AGKAVLLISSELDELLGL 170 (182)
T ss_pred cHHHHHHHHh-hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHH-HHHHHHH-CCCEEEEEeCCHHHHHHh
Confidence 3334433221 17777776655554 468999999999999999988777755 5555555 4889999999975 4567
Q ss_pred cCCCCceEeeE
Q psy5289 681 SRVIPTFRNVQ 691 (813)
Q Consensus 681 ~~~~~~v~~~~ 691 (813)
++++..+.+|.
T Consensus 171 ~d~v~~l~~G~ 181 (182)
T cd03215 171 CDRILVMYEGR 181 (182)
T ss_pred CCEEEEecCCc
Confidence 88766565553
No 145
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.72 E-value=4.9e-17 Score=169.39 Aligned_cols=152 Identities=16% Similarity=0.111 Sum_probs=106.9
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------hhccccccCCcc-----
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------AQIGCFVPCDSA----- 590 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------aq~g~~vpa~~~----- 590 (813)
.+.++++|++.+|++++|+|||||||||||++++++... .++ .++|....
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~ 97 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEI-QMVFQDPMSSLNP 97 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccE-EEEecCchhhcCC
Confidence 578899999999999999999999999999999654210 011 22332210
Q ss_pred chhHH-----------------------HHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q psy5289 591 TISVV-----------------------DQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTS 645 (813)
Q Consensus 591 ~~~~~-----------------------d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd 645 (813)
..++. ..++..+++. +........+|+++++...+++. +.+|+++|||||++|+|
T Consensus 98 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 177 (228)
T cd03257 98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177 (228)
T ss_pred cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 01111 1234455553 34455667788888877666654 68999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEE
Q psy5289 646 TFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVS 693 (813)
Q Consensus 646 ~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~ 693 (813)
+.....+.. ++..+.++.|.++|++||+.+... +++++..+.+|++.
T Consensus 178 ~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 178 VSVQAQILD-LLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred HHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 987776655 444455424889999999987765 78887777777664
No 146
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.72 E-value=4.6e-17 Score=169.13 Aligned_cols=153 Identities=18% Similarity=0.113 Sum_probs=108.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------hhcc-ccccCCcc----c-------h
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------AQIG-CFVPCDSA----T-------I 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------aq~g-~~vpa~~~----~-------~ 592 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.+ .+.|.... . .
T Consensus 35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~ 114 (224)
T cd03220 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGL 114 (224)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCC
Confidence 5688899999999999999999999999999999765311 0111 11121100 0 0
Q ss_pred ------hHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q psy5289 593 ------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQ 665 (813)
Q Consensus 593 ------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~ 665 (813)
.....++..+++.+........+|+++++...+++. +.+|+++|||||++|+|+.....+.. ++..+.+ .+
T Consensus 115 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~-~l~~~~~-~~ 192 (224)
T cd03220 115 SRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQR-RLRELLK-QG 192 (224)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHh-CC
Confidence 012234455666666666778888888877665554 68999999999999999988777755 4455555 47
Q ss_pred CEEEEEcCChHHH-hhcCCCCceEeeEEE
Q psy5289 666 PFTLFATHFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 666 ~~~l~~TH~~el~-~~~~~~~~v~~~~~~ 693 (813)
.++|++||+.+.. .+++++..+.+|++.
T Consensus 193 ~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 221 (224)
T cd03220 193 KTVILVSHDPSSIKRLCDRALVLEKGKIR 221 (224)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 8999999997655 578877777777664
No 147
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=3.2e-17 Score=172.41 Aligned_cols=155 Identities=15% Similarity=0.130 Sum_probs=110.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------------hhccccccCCcc--
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------------AQIGCFVPCDSA-- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------------aq~g~~vpa~~~-- 590 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|....
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLW 94 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcccc
Confidence 3578899999999999999999999999999999754210 000123333211
Q ss_pred -chhH----------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCh
Q psy5289 591 -TISV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTST 646 (813)
Q Consensus 591 -~~~~----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~ 646 (813)
..++ +..++..+|+.+.+......+|+++++...+++. +.+|+++|||||++|+|+
T Consensus 95 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~ 174 (242)
T PRK11124 95 PHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174 (242)
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCH
Confidence 1111 1223455666655566667888888776665554 689999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 647 FDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 647 ~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
.....+.. +++.+.+ .|.++|++||+.+.. .+++++..+.+|++...
T Consensus 175 ~~~~~l~~-~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 175 EITAQIVS-IIRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHHHHH-HHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 87666644 5556665 589999999997765 57888777878777543
No 148
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.72 E-value=3.8e-17 Score=167.50 Aligned_cols=143 Identities=15% Similarity=0.126 Sum_probs=101.6
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------hhccccccCCcc---c
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------AQIGCFVPCDSA---T 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------aq~g~~vpa~~~---~ 591 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+...++|.... .
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIEN 90 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccC
Confidence 3577899999999999999999999999999999754210 001112222210 0
Q ss_pred hh---------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 592 IS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 592 ~~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
.+ .+..++.++|+.+........+|+++++...+++. +.+|+++|||||++|+|+...
T Consensus 91 ~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~ 170 (206)
T TIGR03608 91 ETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNR 170 (206)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHH
Confidence 11 12235566677666666677888888776665554 689999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCC
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIALLSRV 683 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~ 683 (813)
..+.. ++..+.+ .|.++|++||+.++..++++
T Consensus 171 ~~l~~-~l~~~~~-~~~tii~~sh~~~~~~~~d~ 202 (206)
T TIGR03608 171 DEVLD-LLLELND-EGKTIIIVTHDPEVAKQADR 202 (206)
T ss_pred HHHHH-HHHHHHh-cCCEEEEEeCCHHHHhhcCE
Confidence 76644 5555555 48899999999887776654
No 149
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=4.5e-17 Score=168.65 Aligned_cols=157 Identities=15% Similarity=0.158 Sum_probs=123.9
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh------------------------hhhcccc-----------
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF------------------------LAQIGCF----------- 584 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~------------------------laq~g~~----------- 584 (813)
...+|++|+++.|++.+|+|++|||||||+|++..+-- -.++|+.
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrT 99 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRT 99 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccch
Confidence 46779999999999999999999999999999854310 1112211
Q ss_pred ------ccCCccc------hhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q psy5289 585 ------VPCDSAT------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFG 651 (813)
Q Consensus 585 ------vpa~~~~------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~ 651 (813)
.|-+-+. -..+..++..+|+.|......+.+|++.+|+..|+++ |++|+++|.||+|+.+||....+
T Consensus 100 V~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~s 179 (339)
T COG1135 100 VFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQS 179 (339)
T ss_pred HHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHH
Confidence 0111011 1124567888999999999999999999998888876 69999999999999999998888
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEEE
Q psy5289 652 MACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 652 i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~~ 697 (813)
|.. ++..+.++.|.|++++||.++..+ +|+++..+.+|++.....
T Consensus 180 IL~-LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~ 225 (339)
T COG1135 180 ILE-LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225 (339)
T ss_pred HHH-HHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEecc
Confidence 755 666677668999999999999886 899999999999876654
No 150
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=4e-17 Score=173.07 Aligned_cols=153 Identities=18% Similarity=0.171 Sum_probs=107.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc---chhH-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA---TISV- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~---~~~~- 594 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.++|.+.. ..++
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 94 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVR 94 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHH
Confidence 4578899999999999999999999999999999754210 011123333211 1111
Q ss_pred ------------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 595 ------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 595 ------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
+..++..+|+.+........+|+++++...+++. +.+|+++|||||++|+|+...
T Consensus 95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 174 (255)
T PRK11231 95 ELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQ 174 (255)
T ss_pred HHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 1233445566555566667888888776655554 689999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVS 693 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~ 693 (813)
..+.. ++..+.+ .|.++|++||+.+. .++++++..+.+|++.
T Consensus 175 ~~l~~-~l~~l~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 217 (255)
T PRK11231 175 VELMR-LMRELNT-QGKTVVTVLHDLNQASRYCDHLVVLANGHVM 217 (255)
T ss_pred HHHHH-HHHHHHH-CCCEEEEEECCHHHHHHhcCEEEEEECCeEE
Confidence 76655 4455555 48899999999876 4678887777777664
No 151
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.72 E-value=3.2e-17 Score=174.76 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=109.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------------hhccccccCCcc-----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------------AQIGCFVPCDSA----- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------------aq~g~~vpa~~~----- 590 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.++|....
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 103 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP 103 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence 4688999999999999999999999999999999654210 011123333210
Q ss_pred chhH----------------------HHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCh
Q psy5289 591 TISV----------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTST 646 (813)
Q Consensus 591 ~~~~----------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~ 646 (813)
..++ +..++..+|+. +........+|+++++...+++. +.+|+++|||||++|+|+
T Consensus 104 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~ 183 (265)
T TIGR02769 104 RMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183 (265)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 0111 12345566664 34455667888888877666654 689999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEE
Q psy5289 647 FDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSA 694 (813)
Q Consensus 647 ~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~ 694 (813)
.....+.. +++.+.+..|.++|++||+.+... +++++..+.+|.+..
T Consensus 184 ~~~~~l~~-~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 184 VLQAVILE-LLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHH-HHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 87666655 444555424889999999987765 788777777766653
No 152
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.72 E-value=6.1e-17 Score=171.48 Aligned_cols=156 Identities=17% Similarity=0.085 Sum_probs=108.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------h------------hccccccCCc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------A------------QIGCFVPCDS 589 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------a------------q~g~~vpa~~ 589 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... . +.-.++|...
T Consensus 16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (253)
T TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNP 95 (253)
T ss_pred ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCc
Confidence 3578899999999999999999999999999999654210 0 0012333221
Q ss_pred c-----chh----------------------HHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q psy5289 590 A-----TIS----------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDEL 640 (813)
Q Consensus 590 ~-----~~~----------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp 640 (813)
. ... .+..++..++.. +......+.+|+++++...+++. +.+|+++|||||
T Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP 175 (253)
T TIGR02323 96 RDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP 175 (253)
T ss_pred ccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 0 000 112345556664 34566677888888776666554 689999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEE
Q psy5289 641 GRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSAL 695 (813)
Q Consensus 641 ~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~ 695 (813)
++|+|+.....+...+. .+.++.|.++|++||+.+... +++++..+.+|++...
T Consensus 176 ~~~LD~~~~~~l~~~l~-~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 176 TGGLDVSVQARLLDLLR-GLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred CccCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 99999988777755444 444325889999999987765 7887777777776543
No 153
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.71 E-value=4.2e-17 Score=169.01 Aligned_cols=152 Identities=13% Similarity=0.052 Sum_probs=106.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCccc--hhHH-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSAT--ISVV- 595 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~~--~~~~- 595 (813)
..+.++++|++.+|++++|+||||||||||+++++++... .....++|....- .++.
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 96 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRD 96 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHH
Confidence 3578899999999999999999999999999999754210 0111233433211 1111
Q ss_pred --------------HHHHHhcCCchhHhh-----------ccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 596 --------------DQIFTRVGAADSQYR-----------GISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 596 --------------d~i~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
..++..+++.+.+.. ....+|+++++...+++. +.+|+++|||||++|+|+...
T Consensus 97 ~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 176 (220)
T cd03245 97 NITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176 (220)
T ss_pred HhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 223444455443332 225788888877666664 689999999999999999887
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
..+.. ++..+.+ +.++|++||++++..+++++..+.+|++.
T Consensus 177 ~~l~~-~l~~~~~--~~tii~~sH~~~~~~~~d~v~~l~~g~i~ 217 (220)
T cd03245 177 ERLKE-RLRQLLG--DKTLIIITHRPSLLDLVDRIIVMDSGRIV 217 (220)
T ss_pred HHHHH-HHHHhcC--CCEEEEEeCCHHHHHhCCEEEEEeCCeEe
Confidence 77755 4545554 37999999999888888877777777654
No 154
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=9.5e-17 Score=162.90 Aligned_cols=155 Identities=15% Similarity=0.127 Sum_probs=111.0
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----hccccccCCcc-----c--------------------
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----QIGCFVPCDSA-----T-------------------- 591 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----q~g~~vpa~~~-----~-------------------- 591 (813)
.-.|++|+++.|++++++|||||||||+||++.++.... .++.++|-+.. .
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds 118 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDS 118 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhh
Confidence 456999999999999999999999999999985543221 13344554311 0
Q ss_pred hhHH---------------HHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q psy5289 592 ISVV---------------DQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACS 655 (813)
Q Consensus 592 ~~~~---------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~ 655 (813)
+.+. +.+-.-+++...+.....++|-+.+..+.+++ ...+|.+++|||||-|+|......+...
T Consensus 119 ~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~F 198 (325)
T COG4586 119 LEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREF 198 (325)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHH
Confidence 1111 11122234444555556667766666555554 4689999999999999999888777665
Q ss_pred HHHHHHhcCCCEEEEEcCC-hHHHhhcCCCCceEeeEEEEEE
Q psy5289 656 IARELASHRQPFTLFATHF-HEIALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 656 i~~~l~~~~~~~~l~~TH~-~el~~~~~~~~~v~~~~~~~~~ 696 (813)
+-++-.+ .++||+++||+ -+++.+|+++..+..|++...+
T Consensus 199 lke~n~~-~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg 239 (325)
T COG4586 199 LKEYNEE-RQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDG 239 (325)
T ss_pred HHHHHHh-hCceEEEEecchhhHHHhhhheEEeeCCcEeecc
Confidence 5555444 79999999999 4888999999999999998753
No 155
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=3.7e-17 Score=176.08 Aligned_cols=154 Identities=12% Similarity=0.137 Sum_probs=111.4
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------------hhccccccCCcc----
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------------AQIGCFVPCDSA---- 590 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------------aq~g~~vpa~~~---- 590 (813)
.+.++++|++.+|++++|+||||||||||+|+++++... ..+ .++|....
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i-g~v~q~~~~~l~ 99 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRI-GMVFQFPESQLF 99 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhe-EEEecChHhccc
Confidence 588899999999999999999999999999999654210 011 23333210
Q ss_pred chhH---------------------HHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChh
Q psy5289 591 TISV---------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTF 647 (813)
Q Consensus 591 ~~~~---------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~ 647 (813)
..++ +..++..+|+. +.......++|+++++...+++. +.+|+++|||||++|+|+.
T Consensus 100 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~ 179 (286)
T PRK13646 100 EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQ 179 (286)
T ss_pred hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 0011 12345566765 44556778888888877666665 6899999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 648 DGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 648 d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
....+. .++..+.++.|.|+|++||+.+.. .+++++..+.+|++...
T Consensus 180 ~~~~l~-~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~ 227 (286)
T PRK13646 180 SKRQVM-RLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ 227 (286)
T ss_pred HHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 877764 456666543589999999998765 67888877777776543
No 156
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=4.4e-17 Score=159.97 Aligned_cols=157 Identities=14% Similarity=0.181 Sum_probs=109.1
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh----------------------------hhhhcccccc-CC
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV----------------------------FLAQIGCFVP-CD 588 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~----------------------------~laq~g~~vp-a~ 588 (813)
..-+..++++++.++++++++||+|||||||||++..+. +-.++|.... +.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 356788999999999999999999999999999984321 1122332110 00
Q ss_pred ccchhHHHH-----------------H----HHhcCC----chhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q psy5289 589 SATISVVDQ-----------------I----FTRVGA----ADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGR 642 (813)
Q Consensus 589 ~~~~~~~d~-----------------i----~~~~~~----~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~ 642 (813)
.+..+++|. + +....+ .|.+....-.+|++++|+..|++. |.+|+++|||||++
T Consensus 99 PFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtS 178 (253)
T COG1117 99 PFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTS 178 (253)
T ss_pred CCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCccc
Confidence 111222222 1 222233 344545555688888888777775 68999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
++||.....| ..++..|++ .-|++++||.+.-+ +.+|....+-+|.+....+
T Consensus 179 ALDPIsT~kI-EeLi~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~ 231 (253)
T COG1117 179 ALDPISTLKI-EELITELKK--KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGP 231 (253)
T ss_pred ccCchhHHHH-HHHHHHHHh--ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcC
Confidence 9999998887 556666775 78999999997665 4677777777887765443
No 157
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.71 E-value=3.2e-17 Score=181.57 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=116.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------h--------------------hccccccCCcc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------A--------------------QIGCFVPCDSA 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------a--------------------q~g~~vpa~~~ 590 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... . +.-.++|....
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 4567899999999999999999999999999999643210 0 01122332211
Q ss_pred c---hhH---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q psy5289 591 T---ISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTS 645 (813)
Q Consensus 591 ~---~~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd 645 (813)
- .++ ...++..+|+.+........+|++|+|...+.+. +.+|+++|||||++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD 196 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD 196 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 0 111 1234566777766677778899999887766665 68999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEEC
Q psy5289 646 TFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 646 ~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~~ 698 (813)
+.....+...+. .+.++.+.++||+||+.+.+ .+++++..+.+|++......
T Consensus 197 ~~~r~~l~~~L~-~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~ 249 (382)
T TIGR03415 197 PLIRTQLQDELL-ELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTP 249 (382)
T ss_pred HHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 998888755544 45543589999999998765 78999888999988765443
No 158
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=5e-17 Score=173.79 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=110.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc----chhH
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA----TISV 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~----~~~~ 594 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.... ..++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 101 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATV 101 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccH
Confidence 4688899999999999999999999999999999755211 011123443310 1111
Q ss_pred ---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHH
Q psy5289 595 ---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGM 652 (813)
Q Consensus 595 ---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i 652 (813)
+..++.++++.+.+......+|+++++...+++. +.+|+++|||||++|+|+.....+
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l 181 (271)
T PRK13632 102 EDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREI 181 (271)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 1234455666666667778888888877666655 689999999999999999876666
Q ss_pred HHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEE
Q psy5289 653 ACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 653 ~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~ 694 (813)
.. ++..+.+..+.++|++||+.+....++++..+.+|++..
T Consensus 182 ~~-~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~ 222 (271)
T PRK13632 182 KK-IMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIA 222 (271)
T ss_pred HH-HHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEE
Confidence 44 555555423589999999988777777777677777654
No 159
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.71 E-value=8e-17 Score=169.97 Aligned_cols=152 Identities=14% Similarity=0.134 Sum_probs=107.3
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-----h----------------------ccccccCCccc-
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-----Q----------------------IGCFVPCDSAT- 591 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-----q----------------------~g~~vpa~~~~- 591 (813)
.+.++++|++.+|++++|+||||||||||+|+++++.... . .-.++|....-
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 4778999999999999999999999999999997653211 0 01123322110
Q ss_pred -hhHH----------------------HHHHHhcCCc----hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q psy5289 592 -ISVV----------------------DQIFTRVGAA----DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRG 643 (813)
Q Consensus 592 -~~~~----------------------d~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~G 643 (813)
.++. ..++..+|+. +.+......+|+++++...+++. +.+|+++|||||++|
T Consensus 95 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~ 174 (247)
T TIGR00972 95 PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSA 174 (247)
T ss_pred CCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 1111 1234445555 44555667888888877666655 689999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEE
Q psy5289 644 TSTFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 644 td~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~ 694 (813)
+|+.....+.. ++..+.+ ++++|++||+.+. ..+++++..+.+|++..
T Consensus 175 LD~~~~~~l~~-~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 223 (247)
T TIGR00972 175 LDPIATGKIEE-LIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDGELVE 223 (247)
T ss_pred CCHHHHHHHHH-HHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99987777644 5555655 4899999999875 46788887788877654
No 160
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=5.3e-17 Score=175.00 Aligned_cols=153 Identities=12% Similarity=0.094 Sum_probs=110.1
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------------hhccccccCCc----c
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------------AQIGCFVPCDS----A 590 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------------aq~g~~vpa~~----~ 590 (813)
.+.++++|++.+|++++|+||||||||||+|+++++... ..+ .+++... .
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i-g~v~q~~~~~l~ 98 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKV-GVVFQFPESQLF 98 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhE-EEEecCcchhcc
Confidence 578899999999999999999999999999999754211 011 2333321 0
Q ss_pred chhH---------------------HHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChh
Q psy5289 591 TISV---------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTF 647 (813)
Q Consensus 591 ~~~~---------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~ 647 (813)
..++ +..++..+++. +........+|+++++...+++. +.+|+++|||||++|+|+.
T Consensus 99 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~ 178 (288)
T PRK13643 99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 (288)
T ss_pred cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence 0111 22344555664 33456667788888776666554 6899999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 648 DGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 648 d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
....+. .++..+++ .|.++|++||+++.+ .+++++..+.+|++...
T Consensus 179 ~~~~l~-~~l~~l~~-~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~ 225 (288)
T PRK13643 179 ARIEMM-QLFESIHQ-SGQTVVLVTHLMDDVADYADYVYLLEKGHIISC 225 (288)
T ss_pred HHHHHH-HHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 766664 46666765 589999999998766 68898887888877644
No 161
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.71 E-value=4.2e-17 Score=163.29 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=97.4
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhcccc-ccCCcc---------chhHHH---HHHHhcCCch
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCF-VPCDSA---------TISVVD---QIFTRVGAAD 606 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~-vpa~~~---------~~~~~d---~i~~~~~~~d 606 (813)
.+.++++|++.+|++++|+||||||||||+|+++++... ..|.. +..... .++++. .++ .....+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~~ 93 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVPVSDLEKALSSLISVLNQRPYLF-DTTLRN 93 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEEHHHHHHHHHhhEEEEccCCeee-cccHHH
Confidence 467799999999999999999999999999999765321 12211 000000 000000 011 012223
Q ss_pred hHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCC
Q psy5289 607 SQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIP 685 (813)
Q Consensus 607 ~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~ 685 (813)
++ ...+++++++...+++ .+.+|+++|||||++|+|+.....+.. ++..+. .+.++|++||+.+....++++.
T Consensus 94 ~i---~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~-~l~~~~--~~~tii~~sh~~~~~~~~d~~~ 167 (178)
T cd03247 94 NL---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS-LIFEVL--KDKTLIWITHHLTGIEHMDKIL 167 (178)
T ss_pred hh---cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH-HHHHHc--CCCEEEEEecCHHHHHhCCEEE
Confidence 33 4567777766555555 478999999999999999987666644 445554 3789999999988877777776
Q ss_pred ceEeeEEE
Q psy5289 686 TFRNVQVS 693 (813)
Q Consensus 686 ~v~~~~~~ 693 (813)
.+.+|++.
T Consensus 168 ~l~~g~i~ 175 (178)
T cd03247 168 FLENGKII 175 (178)
T ss_pred EEECCEEE
Confidence 67776654
No 162
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.71 E-value=4.2e-17 Score=173.18 Aligned_cols=156 Identities=19% Similarity=0.126 Sum_probs=111.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh-----------------hh------------hccccccCCc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-----------------LA------------QIGCFVPCDS 589 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~-----------------la------------q~g~~vpa~~ 589 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.. +. +...++|...
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~ 98 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP 98 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCc
Confidence 457889999999999999999999999999999965421 10 0122444332
Q ss_pred c-----chh----------------------HHHHHHHhcCCch-hHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCC
Q psy5289 590 A-----TIS----------------------VVDQIFTRVGAAD-SQYRGISTFMMEMKETATVIK-KCTENSLVIIDEL 640 (813)
Q Consensus 590 ~-----~~~----------------------~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp 640 (813)
. .+. .+..++..++..+ ......+++|+++++...+++ .+.+|+++|||||
T Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEP 178 (258)
T PRK11701 99 RDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEP 178 (258)
T ss_pred ccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1 000 1123455666653 556777888888887666665 4689999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEE
Q psy5289 641 GRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSAL 695 (813)
Q Consensus 641 ~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~ 695 (813)
++|+|+.....+.. ++..+.+..|.++|++||+.+... +++++..+.+|++...
T Consensus 179 t~~LD~~~~~~l~~-~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 179 TGGLDVSVQARLLD-LLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred cccCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999987776644 444555434889999999987775 7888888888877543
No 163
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=8.1e-17 Score=170.99 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=106.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------h---------------------hccccccCCcc-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------A---------------------QIGCFVPCDSA- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------a---------------------q~g~~vpa~~~- 590 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... + +.-.++|....
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 4688999999999999999999999999999999765321 0 00123332211
Q ss_pred -chhHH---------------------HHHHHhcCCc----hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q psy5289 591 -TISVV---------------------DQIFTRVGAA----DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRG 643 (813)
Q Consensus 591 -~~~~~---------------------d~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~G 643 (813)
..++. ..++..++.. +.+......+|+++++...+++. +.+|+++|||||++|
T Consensus 105 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~ 184 (258)
T PRK14268 105 FPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSA 184 (258)
T ss_pred CcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 01111 1233334432 22344556788888776666554 689999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 644 TSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 644 td~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
+|+.....+.. +++.+.+ ++++|++||+.+.. .+++++..+.+|.+...
T Consensus 185 LD~~~~~~l~~-~l~~l~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 185 LDPISTARIED-LIMNLKK--DYTIVIVTHNMQQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred cCHHHHHHHHH-HHHHHhh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 99988777644 5555553 68999999998765 67888777777776543
No 164
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.71 E-value=6.9e-17 Score=167.41 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=109.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------------hhccccccCCcc---ch
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------------AQIGCFVPCDSA---TI 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------------aq~g~~vpa~~~---~~ 592 (813)
..+.++++|+..+|++++|+||||||||||++++++.... .+.-.++|.... ..
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL 97 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence 3578899999999999999999999999999999754210 011122332210 00
Q ss_pred h----------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 593 S----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 593 ~----------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
+ .+..++.++|+.+........+++++++...+++. +.+|+++|+|||++|+|+...
T Consensus 98 t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~ 177 (220)
T TIGR02982 98 TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG 177 (220)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 0 12345566777666677778888888876666554 689999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQ 691 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~ 691 (813)
..+.. +++.+.+..++++|++||++++..+++++..+.+|.
T Consensus 178 ~~l~~-~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~ 218 (220)
T TIGR02982 178 RDVVE-LMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGK 218 (220)
T ss_pred HHHHH-HHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCE
Confidence 77644 455555435899999999998888888776666554
No 165
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.71 E-value=2.6e-17 Score=167.05 Aligned_cols=145 Identities=17% Similarity=0.201 Sum_probs=100.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh--hhhhcc------------------ccccCCccchhHHHHH
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV--FLAQIG------------------CFVPCDSATISVVDQI 598 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~--~laq~g------------------~~vpa~~~~~~~~d~i 598 (813)
..+.++++|++.+|++++|+||||||||||+|+++++. ... .| .++|... .+
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~i~~~~q~~-------~~ 93 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV-SGEVLINGRPLDKRSFRKIIGYVPQDD-------IL 93 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEeCchHhhhheEEEccCcc-------cC
Confidence 46888999999999999999999999999999998764 211 12 1222211 11
Q ss_pred HHhcCCchhHhhcc--chhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCCh
Q psy5289 599 FTRVGAADSQYRGI--STFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFH 675 (813)
Q Consensus 599 ~~~~~~~d~~~~~~--s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~ 675 (813)
+..+...+++.... ..+|+++++...+++ .+.+|+++|+|||++|+|+.....+. .+++.+.+ .+.++|++||+.
T Consensus 94 ~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~-~~~tiii~sh~~ 171 (194)
T cd03213 94 HPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVM-SLLRRLAD-TGRTIICSIHQP 171 (194)
T ss_pred CCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHh-CCCEEEEEecCc
Confidence 11122223332211 157777776655554 46899999999999999998777664 45555665 489999999997
Q ss_pred H--HHhhcCCCCceEeeEEE
Q psy5289 676 E--IALLSRVIPTFRNVQVS 693 (813)
Q Consensus 676 e--l~~~~~~~~~v~~~~~~ 693 (813)
+ +..+++++..+.+|++.
T Consensus 172 ~~~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 172 SSEIFELFDKLLLLSQGRVI 191 (194)
T ss_pred hHHHHHhcCEEEEEeCCEEE
Confidence 4 55678888778777764
No 166
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.71 E-value=6.1e-17 Score=167.87 Aligned_cols=152 Identities=15% Similarity=0.119 Sum_probs=105.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCccch--hH--
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSATI--SV-- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~~~--~~-- 594 (813)
..+.++++|++.+|++++|+||||||||||+|++++.... .+.-.++|....-+ ++
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~e 96 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRS 96 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHH
Confidence 3688999999999999999999999999999999754211 01112333322100 11
Q ss_pred ------------HHHHHHhcCCchhHh-----------hccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 595 ------------VDQIFTRVGAADSQY-----------RGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 595 ------------~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
+...+.++++.+.+. ...+.+|+++++...+++. +.+|+++|||||++|+|+....
T Consensus 97 nl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~ 176 (221)
T cd03244 97 NLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176 (221)
T ss_pred HhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 122344455544432 3567788877776666554 6899999999999999998776
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
.+.. +++.+.+ +.++|++||+.+....++++..+.+|++.
T Consensus 177 ~l~~-~l~~~~~--~~tii~~sh~~~~~~~~d~i~~l~~g~~~ 216 (221)
T cd03244 177 LIQK-TIREAFK--DCTVLTIAHRLDTIIDSDRILVLDKGRVV 216 (221)
T ss_pred HHHH-HHHHhcC--CCEEEEEeCCHHHHhhCCEEEEEECCeEE
Confidence 6644 4554543 58999999998877777777667777664
No 167
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.71 E-value=5.6e-17 Score=170.02 Aligned_cols=156 Identities=19% Similarity=0.141 Sum_probs=112.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------h------hccccccCCcc---chh----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------A------QIGCFVPCDSA---TIS---- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------a------q~g~~vpa~~~---~~~---- 593 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... . +.-.++|.... ..+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~en 92 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDN 92 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHH
Confidence 4588899999999999999999999999999999754210 0 01123332211 001
Q ss_pred -----------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHH
Q psy5289 594 -----------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACS 655 (813)
Q Consensus 594 -----------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~ 655 (813)
.++.++.++++.+........+|+++++...+++. +.+|+++|||||++|+|+.....+..
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~- 171 (237)
T TIGR00968 93 IAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRS- 171 (237)
T ss_pred HHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-
Confidence 12345666776666666677888888776665554 68999999999999999987666644
Q ss_pred HHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEEE
Q psy5289 656 IARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 656 i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~~ 695 (813)
++..+.+..++++|++||+++. ..+++++..+.+|++...
T Consensus 172 ~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~ 212 (237)
T TIGR00968 172 WLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQI 212 (237)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 5555555348999999999875 567888878888887644
No 168
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=7.2e-17 Score=173.60 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=113.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------------------hhccccccCCcc----ch
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------------------AQIGCFVPCDSA----TI 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----------------------aq~g~~vpa~~~----~~ 592 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .....++|.... ..
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 98 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA 98 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccc
Confidence 4578899999999999999999999999999999754210 011123443320 11
Q ss_pred hH---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 593 SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 593 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
++ ++.++.++|+.+........+|+++++...+++. +.+|+++|||||++|+|+....
T Consensus 99 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~ 178 (283)
T PRK13636 99 SVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178 (283)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 11 2334556666666666778888888887776665 5899999999999999998777
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
.+.. ++..+.++.|.++|++||+.+.. .+++++..+.+|++...
T Consensus 179 ~l~~-~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~ 223 (283)
T PRK13636 179 EIMK-LLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQ 223 (283)
T ss_pred HHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 6644 55555543489999999998776 48888877888877644
No 169
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.71 E-value=8.7e-17 Score=170.35 Aligned_cols=154 Identities=11% Similarity=0.019 Sum_probs=107.8
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------h----------------hccccccCCcc---c--h
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------A----------------QIGCFVPCDSA---T--I 592 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------a----------------q~g~~vpa~~~---~--~ 592 (813)
.+.++++|++.+|++++|+||||||||||+|+++++... . +.-.++|.+.. . .
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 578899999999999999999999999999999765321 0 01123333321 0 0
Q ss_pred h-------------------HHHHHHHhcCCch---hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 593 S-------------------VVDQIFTRVGAAD---SQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 593 ~-------------------~~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
. .+..++.++++.+ .+......+|+++++...+++. +.+|+++|||||++|+|+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~ 176 (254)
T PRK10418 97 TMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQ 176 (254)
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHH
Confidence 0 1122344555544 2455667888888776666554 689999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
..+.. +++.+.++.|.++|++||+.+.. .+++++..+.+|++..
T Consensus 177 ~~l~~-~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~ 221 (254)
T PRK10418 177 ARILD-LLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE 221 (254)
T ss_pred HHHHH-HHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 66644 55555543588999999998765 5788877777777653
No 170
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=8.7e-17 Score=165.91 Aligned_cols=148 Identities=18% Similarity=0.151 Sum_probs=105.7
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh------------------------hccccccCCcc---chhH--
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA------------------------QIGCFVPCDSA---TISV-- 594 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la------------------------q~g~~vpa~~~---~~~~-- 594 (813)
+++|++.+ ++++|+||||||||||+|+++++.... +.-.++|.... ..++
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 89999999 999999999999999999996542110 00113332211 0111
Q ss_pred -----------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHH
Q psy5289 595 -----------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSI 656 (813)
Q Consensus 595 -----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i 656 (813)
+..++.++|..+......+.+|+++++...+++. +.+|+++|||||++|+|+.....+.. +
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~ 173 (214)
T cd03297 95 NLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLP-E 173 (214)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-H
Confidence 2235566777666667778888888876666554 68999999999999999987776654 5
Q ss_pred HHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEE
Q psy5289 657 ARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 657 ~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~ 693 (813)
+..+.++.|+++|++||+.+.. .+++++..+.+|++.
T Consensus 174 l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (214)
T cd03297 174 LKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211 (214)
T ss_pred HHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 5555543488999999998665 578887777777764
No 171
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.1e-16 Score=170.82 Aligned_cols=176 Identities=16% Similarity=0.166 Sum_probs=115.4
Q ss_pred CCCcccCCCcceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh-h---hhcc---
Q psy5289 510 VRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-L---AQIG--- 582 (813)
Q Consensus 510 ~rP~~~~~~~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~-l---aq~g--- 582 (813)
++|...+ ++..+.+++...-+ +...+.++++|++.+|++++|+||||||||||+|+++++.. . ...|
T Consensus 11 ~~~~~~~-~~~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 84 (268)
T PRK14248 11 IAPFPEA-KEHILEVKDLSIYY-----GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEIL 84 (268)
T ss_pred cccCCCC-CCceEEEEEEEEEe-----CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEE
Confidence 4454433 23456777664322 12468899999999999999999999999999999976421 0 0111
Q ss_pred --------------------ccccCCccc--hhHHHH----------------------HHHhcCCc----hhHhhccch
Q psy5289 583 --------------------CFVPCDSAT--ISVVDQ----------------------IFTRVGAA----DSQYRGIST 614 (813)
Q Consensus 583 --------------------~~vpa~~~~--~~~~d~----------------------i~~~~~~~----d~~~~~~s~ 614 (813)
.++|....- .++.+. .+..++.. +......+.
T Consensus 85 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 164 (268)
T PRK14248 85 YEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALS 164 (268)
T ss_pred ECCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCccc
Confidence 123322110 011111 12223321 223445677
Q ss_pred hHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEE
Q psy5289 615 FMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQV 692 (813)
Q Consensus 615 f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~ 692 (813)
+|+++++...+++. +.+|+++|||||++|+|+.....+.. ++..+.+ +.++|++||+.+. ..+++++..+.+|++
T Consensus 165 LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~~G~i 241 (268)
T PRK14248 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEE-LITELKE--EYSIIIVTHNMQQALRVSDRTAFFLNGDL 241 (268)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHH-HHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEEECCEE
Confidence 88888877666655 68999999999999999988777744 5555554 5799999999764 567888777777776
Q ss_pred EE
Q psy5289 693 SA 694 (813)
Q Consensus 693 ~~ 694 (813)
..
T Consensus 242 ~~ 243 (268)
T PRK14248 242 VE 243 (268)
T ss_pred EE
Confidence 54
No 172
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=5e-17 Score=175.35 Aligned_cols=156 Identities=16% Similarity=0.065 Sum_probs=112.2
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh------------------------hccccccCCcc----c
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA------------------------QIGCFVPCDSA----T 591 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la------------------------q~g~~vpa~~~----~ 591 (813)
.+.++++|++.+|++++|+||||||||||+|+++++.... +...++|.... .
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE 100 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh
Confidence 5788999999999999999999999999999996542110 11123443210 0
Q ss_pred hh---------------------HHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q psy5289 592 IS---------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 592 ~~---------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d 648 (813)
.+ .++.++..+|+. +.......++|+++++...+++. +.+|+++|||||++|+|+..
T Consensus 101 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~ 180 (290)
T PRK13634 101 ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 (290)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 11 123345566775 34466678888888877666654 68999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEE
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~ 696 (813)
...+.. ++..+.++.|.++|++||+.+.. .+++++..+.+|++....
T Consensus 181 ~~~l~~-~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 181 RKEMME-MFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 776644 55566553589999999997765 678888888888776543
No 173
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.71 E-value=6.5e-17 Score=170.64 Aligned_cols=151 Identities=11% Similarity=0.106 Sum_probs=110.1
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-------------------hccccccCCcc---chh-----
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------------------QIGCFVPCDSA---TIS----- 593 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-------------------q~g~~vpa~~~---~~~----- 593 (813)
+.++++|++.+|++++|+||||||||||+|+++++...+ +.-.++|.... ..+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl 90 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL 90 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence 578999999999999999999999999999997553110 00123332210 001
Q ss_pred ---------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhC-C-------CCcEEEEeCCCCCCChhhHH
Q psy5289 594 ---------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T-------ENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 594 ---------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~-~-------~~~LlllDEp~~Gtd~~d~~ 650 (813)
.++.++.++++.+........+|+++++...+++.. . +|+++|||||++|+|+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~ 170 (248)
T PRK03695 91 TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA 170 (248)
T ss_pred HhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHH
Confidence 124456667777666777788999998887777765 3 56999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChH-HHhhcCCCCceEeeEEE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHE-IALLSRVIPTFRNVQVS 693 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~e-l~~~~~~~~~v~~~~~~ 693 (813)
.+.. ++..+.+ .|.++|++||+.+ +..+++++..+.+|++.
T Consensus 171 ~l~~-~L~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~ 212 (248)
T PRK03695 171 ALDR-LLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLL 212 (248)
T ss_pred HHHH-HHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 7654 5555655 4889999999976 55788887777777664
No 174
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.3e-16 Score=169.15 Aligned_cols=168 Identities=15% Similarity=0.119 Sum_probs=112.8
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----hcc-------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----QIG------------- 582 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----q~g------------- 582 (813)
..+.+++..+.+ +...+.++++|++.+|++++|+||||||||||+|+++++.... ..|
T Consensus 6 ~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (254)
T PRK14273 6 AIIETENLNLFY-----TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN 80 (254)
T ss_pred ceEEEeeeEEEe-----CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc
Confidence 356777665443 1245889999999999999999999999999999997653210 011
Q ss_pred ----------ccccCCcc--chhHHHH----------------------HHHhcCC----chhHhhccchhHHHHHHHHH
Q psy5289 583 ----------CFVPCDSA--TISVVDQ----------------------IFTRVGA----ADSQYRGISTFMMEMKETAT 624 (813)
Q Consensus 583 ----------~~vpa~~~--~~~~~d~----------------------i~~~~~~----~d~~~~~~s~f~~e~~~~~~ 624 (813)
.++|.+.. ..++.+. .+..+++ .+......+.+|+++++...
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~ 160 (254)
T PRK14273 81 FDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC 160 (254)
T ss_pred ccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH
Confidence 12332211 1122221 1222232 12234445678888887766
Q ss_pred HHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 625 VIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 625 il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
+++. +.+|+++|||||++|+|+.....+.. ++..+.+ +.++|++||+.+.+ .+++++..+.+|++...
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~--~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 161 IARTLAIEPNVILMDEPTSALDPISTGKIEE-LIINLKE--SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE 230 (254)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 6655 68999999999999999988777755 5555553 68999999998765 67888777777776543
No 175
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=8.7e-17 Score=168.02 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=106.0
Q ss_pred cccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------h------hccccccCCcc---chhH-------
Q psy5289 543 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------A------QIGCFVPCDSA---TISV------- 594 (813)
Q Consensus 543 n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------a------q~g~~vpa~~~---~~~~------- 594 (813)
.+++|++.+|++++|+||||||||||+|+++++... . ....++|.... ..++
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLG 95 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcc
Confidence 378999999999999999999999999999654210 0 00123332210 0111
Q ss_pred --------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q psy5289 595 --------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARE 659 (813)
Q Consensus 595 --------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~ 659 (813)
+..++..+|+.+.+......+|+++++...+++ .+.+|+++|||||++|+|+.....+.. ++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~-~l~~ 174 (232)
T PRK10771 96 LNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLT-LVSQ 174 (232)
T ss_pred cccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHH
Confidence 233456667666666777788888887766665 468999999999999999988777655 4444
Q ss_pred HHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEE
Q psy5289 660 LASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 660 l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~ 693 (813)
+.+..|+++|++||+.+.. .+++++..+.+|++.
T Consensus 175 ~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 209 (232)
T PRK10771 175 VCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA 209 (232)
T ss_pred HHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 5432488999999998764 578877767776664
No 176
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.70 E-value=7.4e-17 Score=172.12 Aligned_cols=154 Identities=14% Similarity=0.059 Sum_probs=106.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc-----chh
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA-----TIS 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~-----~~~ 593 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.++|.... ...
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t 105 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR 105 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence 3578899999999999999999999999999999754311 011123333211 000
Q ss_pred ----------------------HHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q psy5289 594 ----------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 594 ----------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~ 649 (813)
.+..++..+++. +......+.+|+++++...+++ .+.+|+++|||||++|+|+...
T Consensus 106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 185 (267)
T PRK15112 106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMR 185 (267)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHH
Confidence 112345566663 3344455788888877666554 4689999999999999999776
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVS 693 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~ 693 (813)
..+.. ++..+.+..|.++|++||+.+... +++++..+.+|++.
T Consensus 186 ~~l~~-~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~ 229 (267)
T PRK15112 186 SQLIN-LMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229 (267)
T ss_pred HHHHH-HHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 66644 444555434889999999987665 68877767776664
No 177
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=7.7e-17 Score=172.71 Aligned_cols=154 Identities=14% Similarity=0.144 Sum_probs=110.2
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------------------hhccccccCCc----cchh
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------------------AQIGCFVPCDS----ATIS 593 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----------------------aq~g~~vpa~~----~~~~ 593 (813)
.+.++++|++.+|++++|+||||||||||+|+++++... .+.-.++|.+. ...+
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPT 95 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcccc
Confidence 467899999999999999999999999999999654211 01112334331 0111
Q ss_pred H---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q psy5289 594 V---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFG 651 (813)
Q Consensus 594 ~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~ 651 (813)
+ +..++.++++.+.......++|+++++...+++. +.+|+++|||||++|+|+.....
T Consensus 96 v~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 175 (275)
T PRK13639 96 VEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175 (275)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 1 1234455666555556677888888877666554 68999999999999999988777
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 652 MACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 652 i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
+.. ++..+.+ .|.++|++||+.+.. .+++++..+.+|++...
T Consensus 176 l~~-~l~~l~~-~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~ 218 (275)
T PRK13639 176 IMK-LLYDLNK-EGITIIISTHDVDLVPVYADKVYVMSDGKIIKE 218 (275)
T ss_pred HHH-HHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 755 4455555 489999999998765 47888777777777654
No 178
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.6e-16 Score=171.01 Aligned_cols=153 Identities=16% Similarity=0.127 Sum_probs=105.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--h--hhcc-----------------------ccccCCccc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--L--AQIG-----------------------CFVPCDSAT 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--l--aq~g-----------------------~~vpa~~~~ 591 (813)
..+.++++|++.+|++++|+||||||||||||+++++.. . ...| .++|....-
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 458899999999999999999999999999999987421 0 0111 133332110
Q ss_pred h--hHHH----------------------HHHHhcCC----chhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q psy5289 592 I--SVVD----------------------QIFTRVGA----ADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGR 642 (813)
Q Consensus 592 ~--~~~d----------------------~i~~~~~~----~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~ 642 (813)
+ ++.+ .++..+++ .+.+.....++|+++++...+++. +.+|+++|||||++
T Consensus 132 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~ 211 (286)
T PRK14275 132 FPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTS 211 (286)
T ss_pred CccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 0 1111 22333343 233445567788888776666554 68999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
|+|+.....+.. ++..+.+ +.++|++||+.+.. .+++++..+.+|++..
T Consensus 212 gLD~~~~~~l~~-~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~ 261 (286)
T PRK14275 212 ALDPKATAKIED-LIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYEGVLVE 261 (286)
T ss_pred cCCHHHHHHHHH-HHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999987766644 5555554 58999999998775 5788877777776643
No 179
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=1.1e-16 Score=174.67 Aligned_cols=176 Identities=12% Similarity=0.043 Sum_probs=119.5
Q ss_pred cceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-------------------
Q psy5289 519 TGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA------------------- 579 (813)
Q Consensus 519 ~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la------------------- 579 (813)
...|.+++...-+-........+.++++|++.+|++++|+||||||||||+|+++++....
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 3557777765433110001135899999999999999999999999999999996542100
Q ss_pred -----------------hccccccCCc----cchh---------------------HHHHHHHhcCCc-hhHhhccchhH
Q psy5289 580 -----------------QIGCFVPCDS----ATIS---------------------VVDQIFTRVGAA-DSQYRGISTFM 616 (813)
Q Consensus 580 -----------------q~g~~vpa~~----~~~~---------------------~~d~i~~~~~~~-d~~~~~~s~f~ 616 (813)
+.-.+++... ...+ .+..++..+|+. +........+|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 178 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS 178 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 0011233221 0001 112344556664 34556667888
Q ss_pred HHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEE
Q psy5289 617 MEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 617 ~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~ 694 (813)
+++++...+++. +.+|+++|||||++|+|+.....+.. ++..+.+ .|.|+|++||+.+. ..+++++..+.+|++..
T Consensus 179 gGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~-~L~~l~~-~g~TiiivtHd~~~~~~~adri~vl~~G~i~~ 256 (320)
T PRK13631 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDAKA-NNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256 (320)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 888877666655 68999999999999999988777754 5555655 48999999999875 46889888788887765
Q ss_pred EE
Q psy5289 695 LE 696 (813)
Q Consensus 695 ~~ 696 (813)
..
T Consensus 257 ~g 258 (320)
T PRK13631 257 TG 258 (320)
T ss_pred eC
Confidence 43
No 180
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=2e-17 Score=165.53 Aligned_cols=146 Identities=16% Similarity=0.220 Sum_probs=93.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhcccc-ccCCc-c-----------chhHHH---HHHHhc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCF-VPCDS-A-----------TISVVD---QIFTRV 602 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~-vpa~~-~-----------~~~~~d---~i~~~~ 602 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... ..|.. +.... . .++++. .++...
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHL 91 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCC
Confidence 3578899999999999999999999999999999765321 12211 10000 0 000000 011111
Q ss_pred CCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-h
Q psy5289 603 GAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-L 680 (813)
Q Consensus 603 ~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~ 680 (813)
...+++... +|+++++...+++ .+.+|+++|||||++|+|+.....+.. ++..+.++.+.++|++||+.+... +
T Consensus 92 t~~~~l~~~---lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~~~ 167 (178)
T cd03229 92 TVLENIALG---LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRA-LLKSLQAQLGITVVLVTHDLDEAARL 167 (178)
T ss_pred CHHHheeec---CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 122222111 6767666555444 568999999999999999987766644 555566523789999999987765 6
Q ss_pred cCCCCceEe
Q psy5289 681 SRVIPTFRN 689 (813)
Q Consensus 681 ~~~~~~v~~ 689 (813)
++++..+.+
T Consensus 168 ~d~i~~l~~ 176 (178)
T cd03229 168 ADRVVVLRD 176 (178)
T ss_pred cCEEEEEeC
Confidence 776554444
No 181
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=7.9e-17 Score=173.18 Aligned_cols=154 Identities=12% Similarity=0.067 Sum_probs=108.7
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------hhccccccCCc----cc
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------AQIGCFVPCDS----AT 591 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------aq~g~~vpa~~----~~ 591 (813)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.++|... ..
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE 100 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc
Confidence 478899999999999999999999999999999754210 00112444331 01
Q ss_pred hhHH---------------------HHHHHhcCCch-hHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhh
Q psy5289 592 ISVV---------------------DQIFTRVGAAD-SQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 592 ~~~~---------------------d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d 648 (813)
.++. +.++..+++.+ ........+|+++++...+++ .+.+|+++|||||++|+|+..
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 180 (280)
T PRK13649 101 ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180 (280)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 1111 22334556643 345566788888887766665 468999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
...+.. ++..+.+ .|.++|++||+.+.. .+++++..+.+|++...
T Consensus 181 ~~~l~~-~l~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 181 RKELMT-LFKKLHQ-SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHH-HHHHHHH-CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence 776644 4555555 488999999998765 57888777777776543
No 182
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.70 E-value=8.1e-17 Score=164.88 Aligned_cols=141 Identities=13% Similarity=0.149 Sum_probs=101.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc---ch---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA---TI--- 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~---~~--- 592 (813)
..+.++++|++.+|++++|+||||||||||+|++++.... .+++ ++|.... ..
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~tv~ 92 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL-YLGHQPGIKTELTAL 92 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheE-EeCCccccCcCCcHH
Confidence 3578899999999999999999999999999999654210 0111 2222110 00
Q ss_pred ---------------hHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHH
Q psy5289 593 ---------------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSI 656 (813)
Q Consensus 593 ---------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i 656 (813)
..++.++.++|+.+......+.+|+++++...+++. +.+|+++|+|||++|+|+.....+.. +
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~ 171 (204)
T PRK13538 93 ENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEA-L 171 (204)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-H
Confidence 112345667777766677778898888877666554 68999999999999999988777744 5
Q ss_pred HHHHHhcCCCEEEEEcCChHHHhhcC
Q psy5289 657 ARELASHRQPFTLFATHFHEIALLSR 682 (813)
Q Consensus 657 ~~~l~~~~~~~~l~~TH~~el~~~~~ 682 (813)
+..+.+ .+.++|++||+.+....++
T Consensus 172 l~~~~~-~~~tiii~sh~~~~i~~~~ 196 (204)
T PRK13538 172 LAQHAE-QGGMVILTTHQDLPVASDK 196 (204)
T ss_pred HHHHHH-CCCEEEEEecChhhhccCC
Confidence 555554 4889999999987775543
No 183
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=8.7e-17 Score=179.36 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=114.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------------hhccccccCCcc---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------------AQIGCFVPCDSA--- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------------aq~g~~vpa~~~--- 590 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .++ .++|....
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~i-gyv~Q~~~l~~ 119 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI-AMVFQSFALMP 119 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCE-EEEECCCcCCC
Confidence 3467899999999999999999999999999999654210 012 23333211
Q ss_pred chh---------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q psy5289 591 TIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 591 ~~~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d 648 (813)
..+ .+..++..+|+.+......+.+|++++|...+++. +.+|+++|||||++|+|+..
T Consensus 120 ~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~ 199 (400)
T PRK10070 120 HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI 199 (400)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 001 12235666777777777788999988887776664 68999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEE
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~ 696 (813)
...+.. ++..+.++.|+++|++||+.+.+ .+++++..+.+|++....
T Consensus 200 r~~l~~-~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g 247 (400)
T PRK10070 200 RTEMQD-ELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVG 247 (400)
T ss_pred HHHHHH-HHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecC
Confidence 777754 45555543589999999997665 678888888888876543
No 184
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.70 E-value=2.6e-17 Score=162.84 Aligned_cols=134 Identities=13% Similarity=0.045 Sum_probs=93.2
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhcc----------ccccCCccchhHHHHHHHhcCCchhHh
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG----------CFVPCDSATISVVDQIFTRVGAADSQY 609 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g----------~~vpa~~~~~~~~d~i~~~~~~~d~~~ 609 (813)
.+.++++|++.+|++++|+||||||||||+|++++..... .| .++|.+..- + .....+++.
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~-------~-~~tv~~nl~ 85 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYL-------P-LGTLREQLI 85 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCcc-------c-cccHHHHhh
Confidence 4678999999999999999999999999999997653221 11 234433210 1 122333333
Q ss_pred h-ccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCce
Q psy5289 610 R-GISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTF 687 (813)
Q Consensus 610 ~-~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v 687 (813)
. ....+|+++++...+++ .+.+|+++|+|||++|+|+.....+.. .+.+ .+.++|++||+.++...++++..+
T Consensus 86 ~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~----~l~~-~~~tiiivsh~~~~~~~~d~i~~l 160 (166)
T cd03223 86 YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ----LLKE-LGITVISVGHRPSLWKFHDRVLDL 160 (166)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHH----HHHH-hCCEEEEEeCChhHHhhCCEEEEE
Confidence 2 45677777777655555 468999999999999999977665543 3333 268999999998877777655433
No 185
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=9e-17 Score=175.84 Aligned_cols=157 Identities=14% Similarity=0.044 Sum_probs=114.7
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------h----hccccccCCcc-
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------A----QIGCFVPCDSA- 590 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------a----q~g~~vpa~~~- 590 (813)
.+.++++|++.+|++++|+||||||||||+|+++++... . +.-.++|.+..
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 578899999999999999999999999999999664320 0 00123443321
Q ss_pred ------chh--------------------HHHHHHHhcCCch---hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q psy5289 591 ------TIS--------------------VVDQIFTRVGAAD---SQYRGISTFMMEMKETATVIKK-CTENSLVIIDEL 640 (813)
Q Consensus 591 ------~~~--------------------~~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp 640 (813)
.+. .+..++.++|+.+ .+......+|++|+|...|++. +.+|+|+|+|||
T Consensus 101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEP 180 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP 180 (326)
T ss_pred hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 000 1223556677653 3456678899999987776665 689999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 641 GRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 641 ~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
|+|+|+.....+.. ++..+.++.|.++|++|||++++ .+++++..+.+|++....+
T Consensus 181 ts~LD~~~~~~il~-lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~ 237 (326)
T PRK11022 181 TTALDVTIQAQIIE-LLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGK 237 (326)
T ss_pred CCCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999988777754 55556554589999999998776 6889888888888765443
No 186
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.70 E-value=7.6e-17 Score=165.05 Aligned_cols=148 Identities=11% Similarity=0.123 Sum_probs=98.3
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhcc--------ccccCCcc--chhHHH-------------
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG--------CFVPCDSA--TISVVD------------- 596 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g--------~~vpa~~~--~~~~~d------------- 596 (813)
.+.++++|++++|++++|+||||||||||+|+++++.... .| .++|.... ..++.+
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~-~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~ 97 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL-SGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERY 97 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC-CCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHH
Confidence 4778999999999999999999999999999997653211 11 23333311 111111
Q ss_pred -HHHHhcCCchhH-----------hhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q psy5289 597 -QIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASH 663 (813)
Q Consensus 597 -~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~ 663 (813)
.....+++.+.+ ......+++++++...+++. +.+|+++|+|||++|+|+.....+...++....+
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~- 176 (204)
T cd03250 98 EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL- 176 (204)
T ss_pred HHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-
Confidence 122222332222 22345677777776555554 6899999999999999997766665555554444
Q ss_pred CCCEEEEEcCChHHHhhcCCCCceEe
Q psy5289 664 RQPFTLFATHFHEIALLSRVIPTFRN 689 (813)
Q Consensus 664 ~~~~~l~~TH~~el~~~~~~~~~v~~ 689 (813)
.|.++|++||+++....++++..+.+
T Consensus 177 ~~~tvi~~sh~~~~~~~~d~i~~l~~ 202 (204)
T cd03250 177 NNKTRILVTHQLQLLPHADQIVVLDN 202 (204)
T ss_pred CCCEEEEEeCCHHHHhhCCEEEEEeC
Confidence 47899999999877766665544433
No 187
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.70 E-value=1.6e-16 Score=163.85 Aligned_cols=158 Identities=14% Similarity=0.068 Sum_probs=107.3
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------hhcc
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------AQIG 582 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------aq~g 582 (813)
..+.+++....+ +...+.++++|++.+|++++|+||||||||||+|+++++... ...-
T Consensus 10 ~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i 84 (214)
T PRK13543 10 PLLAAHALAFSR-----NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFM 84 (214)
T ss_pred ceEEEeeEEEec-----CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhce
Confidence 346666654322 124588999999999999999999999999999999754210 0001
Q ss_pred ccccCCcc---chhHH------------------HHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q psy5289 583 CFVPCDSA---TISVV------------------DQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDEL 640 (813)
Q Consensus 583 ~~vpa~~~---~~~~~------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp 640 (813)
.|+|.... ..++. ..++..+++.+........+|+++++...+++. +.+|+++|||||
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEP 164 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 23332211 11111 234455666555556667888887776665554 689999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCC
Q psy5289 641 GRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVI 684 (813)
Q Consensus 641 ~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~ 684 (813)
++|+|+.....+ ..++..+.+ .|.++|++||+++.. .+++++
T Consensus 165 t~~LD~~~~~~l-~~~l~~~~~-~~~tiii~sH~~~~~~~~~~~i 207 (214)
T PRK13543 165 YANLDLEGITLV-NRMISAHLR-GGGAALVTTHGAYAAPPVRTRM 207 (214)
T ss_pred cccCCHHHHHHH-HHHHHHHHh-CCCEEEEEecChhhhhhhcceE
Confidence 999999876666 446655555 588999999997655 566654
No 188
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.70 E-value=9.1e-17 Score=171.47 Aligned_cols=157 Identities=16% Similarity=0.076 Sum_probs=110.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------------hhccccccCCcc-----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------------AQIGCFVPCDSA----- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------------aq~g~~vpa~~~----- 590 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .+...++|....
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 104 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP 104 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCC
Confidence 4688899999999999999999999999999999754210 001122332210
Q ss_pred chh----------------------HHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCh
Q psy5289 591 TIS----------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTST 646 (813)
Q Consensus 591 ~~~----------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~ 646 (813)
..+ .++.++.++|.. +........+|+++++...+++ .+.+|+++|||||++|+|+
T Consensus 105 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~ 184 (268)
T PRK10419 105 RKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL 184 (268)
T ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 000 123355566664 3455666778877776655555 4689999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEE
Q psy5289 647 FDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALE 696 (813)
Q Consensus 647 ~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~ 696 (813)
.....+.. +++.+.+..+.++|++||+.+... +++++..+.+|.+....
T Consensus 185 ~~~~~~~~-~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g 234 (268)
T PRK10419 185 VLQAGVIR-LLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQ 234 (268)
T ss_pred HHHHHHHH-HHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeC
Confidence 87666644 555555434889999999987764 78888778787776443
No 189
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.70 E-value=7.3e-17 Score=172.63 Aligned_cols=152 Identities=19% Similarity=0.188 Sum_probs=106.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------hhccccccCCcc-------c---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------AQIGCFVPCDSA-------T--- 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------aq~g~~vpa~~~-------~--- 591 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... ...-.++|.... .
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 99 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVED 99 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhh
Confidence 4578899999999999999999999999999999654210 011123332210 0
Q ss_pred --------------------hhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 592 --------------------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 592 --------------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
-.....++.++|+.+........+|+++++...+++. +.+|+++|||||++|+|+....
T Consensus 100 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~ 179 (272)
T PRK15056 100 VVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA 179 (272)
T ss_pred heecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 0012345566777766667778899888877666654 6899999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVS 693 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~ 693 (813)
.+.. ++..+.+ .|.++|++||+.+. ..+++++. +.+|++.
T Consensus 180 ~l~~-~L~~~~~-~g~tviivsH~~~~~~~~~d~v~-~~~G~i~ 220 (272)
T PRK15056 180 RIIS-LLRELRD-EGKTMLVSTHNLGSVTEFCDYTV-MVKGTVL 220 (272)
T ss_pred HHHH-HHHHHHh-CCCEEEEEeCCHHHHHHhCCEEE-EECCEEE
Confidence 7754 5555655 48899999999765 46777643 2355543
No 190
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.2e-16 Score=175.48 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=112.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh-----hh------------------------hccccccCCc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-----LA------------------------QIGCFVPCDS 589 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~-----la------------------------q~g~~vpa~~ 589 (813)
..+.++++|++.+|++++|+||||||||||+|+|+++.. -+ .+ .++|.+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i-~~v~Q~~ 98 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNV-SMIFQEP 98 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCE-EEEecCc
Confidence 457899999999999999999999999999999976531 00 11 2333321
Q ss_pred c-----chh---------------------------HHHHHHHhcCCch---hHhhccchhHHHHHHHHHHHHh-CCCCc
Q psy5289 590 A-----TIS---------------------------VVDQIFTRVGAAD---SQYRGISTFMMEMKETATVIKK-CTENS 633 (813)
Q Consensus 590 ~-----~~~---------------------------~~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~~-~~~~~ 633 (813)
. ... .+..++.++|+.+ .+......+|++|+|...|++. +.+|+
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ 178 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCC
Confidence 1 000 1123455666653 2345567899999887776665 68999
Q ss_pred EEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEE
Q psy5289 634 LVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 634 LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~ 696 (813)
|+|+|||++|+|+.....+.. ++..+.++.|.++|++|||++++ .+++++..+.+|++....
T Consensus 179 llilDEPts~LD~~~~~~i~~-lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g 241 (330)
T PRK15093 179 LLIADEPTNAMEPTTQAQIFR-LLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241 (330)
T ss_pred EEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999988777755 55556653589999999998777 578888878888776543
No 191
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.6e-16 Score=168.86 Aligned_cols=168 Identities=13% Similarity=0.104 Sum_probs=113.0
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----hhcc-------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----AQIG------------- 582 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----aq~g------------- 582 (813)
+.+.+++....+ +...+.++++|++.+|++++|+||||||||||+|+++++... ...|
T Consensus 12 ~~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 12 SKIQVRNLNFYY-----GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred ceEEEEEEEEEe-----CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 457777765433 124588999999999999999999999999999999866320 0111
Q ss_pred ----------ccccCCcc--chhHH----------------------HHHHHhcCCc----hhHhhccchhHHHHHHHHH
Q psy5289 583 ----------CFVPCDSA--TISVV----------------------DQIFTRVGAA----DSQYRGISTFMMEMKETAT 624 (813)
Q Consensus 583 ----------~~vpa~~~--~~~~~----------------------d~i~~~~~~~----d~~~~~~s~f~~e~~~~~~ 624 (813)
.++|.... ..++. ..++..+++. +.+.....++|+++++...
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 166 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC 166 (260)
T ss_pred cchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence 12332211 01111 1223334432 2234455678888777666
Q ss_pred HHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 625 VIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 625 il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
+++. +.+|+++|||||++|+|+.....+.. ++..+.+ +.++|++||+.+.. .+++++..+.+|++...
T Consensus 167 laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEE-LITELKQ--DYTVVIVTHNMQQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHCCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 5554 68999999999999999987766644 4555543 67999999998765 57888777777776543
No 192
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.70 E-value=9.4e-17 Score=153.62 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=113.8
Q ss_pred cccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhcccc---------ccCCcc-----------------------
Q psy5289 543 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCF---------VPCDSA----------------------- 590 (813)
Q Consensus 543 n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~---------vpa~~~----------------------- 590 (813)
=.+++.+..|++++|+||+||||||||+.||+....++.... -|++..
T Consensus 16 ~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLG 95 (231)
T COG3840 16 MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLG 95 (231)
T ss_pred EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhccc
Confidence 356667788999999999999999999999865433221111 122110
Q ss_pred ----------chhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q psy5289 591 ----------TISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI-KKCTENSLVIIDELGRGTSTFDGFGMACSIARE 659 (813)
Q Consensus 591 ----------~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~ 659 (813)
.-..++.+..++|+.+...+-..++|++.+|...+. +...++++++||||++.+||.-+..+. +++..
T Consensus 96 l~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl-~Lv~~ 174 (231)
T COG3840 96 LSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEML-ALVSQ 174 (231)
T ss_pred CCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHH-HHHHH
Confidence 011234567788888888888888887777655544 456889999999999999998777764 46666
Q ss_pred HHhcCCCEEEEEcCCh-HHHhhcCCCCceEeeEEEEEEEC
Q psy5289 660 LASHRQPFTLFATHFH-EIALLSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 660 l~~~~~~~~l~~TH~~-el~~~~~~~~~v~~~~~~~~~~~ 698 (813)
++.+.+.|+|++||.. +...+++++..+.+|++.+...-
T Consensus 175 l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~ 214 (231)
T COG3840 175 LCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGST 214 (231)
T ss_pred HHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccH
Confidence 7666899999999996 55668899888999999876543
No 193
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=6.3e-17 Score=156.65 Aligned_cols=161 Identities=19% Similarity=0.236 Sum_probs=124.1
Q ss_pred CceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh---------------------------hhhh---------
Q psy5289 537 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV---------------------------FLAQ--------- 580 (813)
Q Consensus 537 ~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~---------------------------~laq--------- 580 (813)
+...|.+++++++++|.++.|+|||||||||||-.++-+. ++.|
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlT 91 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT 91 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeE
Confidence 3467888999999999999999999999999999886332 1111
Q ss_pred ------ccccccCCccch-----hHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q psy5289 581 ------IGCFVPCDSATI-----SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 581 ------~g~~vpa~~~~~-----~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d 648 (813)
.|- .|-..++. ..+++.+..+.+.+--.+...++|++.+|++.++.. |.+.+.|+||||...+|...
T Consensus 92 V~dLv~FGR-fPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkH 170 (252)
T COG4604 92 VRDLVGFGR-FPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKH 170 (252)
T ss_pred HHHHhhcCC-CcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHH
Confidence 111 23333332 234556667777777777788899999999998876 57889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEEECC
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQED 699 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~~~~ 699 (813)
..++.. +++.+.++.|.|++++-||..++. ++|++..++||.+...+.++
T Consensus 171 sv~iMk-~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~ 221 (252)
T COG4604 171 SVQIMK-ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPD 221 (252)
T ss_pred HHHHHH-HHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHH
Confidence 888865 666777668999999999999886 67888889998886654443
No 194
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.70 E-value=1.1e-16 Score=170.84 Aligned_cols=155 Identities=16% Similarity=0.121 Sum_probs=109.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----------------------------hccccccCCc-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----------------------------QIGCFVPCDS- 589 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----------------------------q~g~~vpa~~- 589 (813)
..+.++++|++.+|++++|+||||||||||||+++++.... ....++|...
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 45788999999999999999999999999999997653211 0112333321
Q ss_pred --cchhHH-------------------------HHHHHhcCCchhHhhccchhHHHHHHHHHHHHhC----------CCC
Q psy5289 590 --ATISVV-------------------------DQIFTRVGAADSQYRGISTFMMEMKETATVIKKC----------TEN 632 (813)
Q Consensus 590 --~~~~~~-------------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~----------~~~ 632 (813)
...++. ..++..+++.+......+++|+++++...+++.. .+|
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p 173 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPP 173 (272)
T ss_pred CCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCC
Confidence 111121 2234445555555566778888888877766654 389
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 633 SLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 633 ~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
+++|||||++|+|+.....+.. ++..+.+..|.++|++||+.+.. .+++++..+.+|++..
T Consensus 174 ~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~ 235 (272)
T PRK13547 174 RYLLLDEPTAALDLAHQHRLLD-TVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVA 235 (272)
T ss_pred CEEEEcCccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEE
Confidence 9999999999999988777755 45455542488999999997765 5788777777776543
No 195
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.7e-16 Score=168.09 Aligned_cols=153 Identities=15% Similarity=0.138 Sum_probs=104.6
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--h--hhcc-----------------------ccccCCccc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--L--AQIG-----------------------CFVPCDSAT 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--l--aq~g-----------------------~~vpa~~~~ 591 (813)
..+.++++|++.+|++++|+||||||||||||+++++.. . ...| .++|....-
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 98 (253)
T PRK14242 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNP 98 (253)
T ss_pred eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCC
Confidence 458899999999999999999999999999999976521 0 0111 123322110
Q ss_pred --hhHHHH----------------------HHHhcCCch----hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q psy5289 592 --ISVVDQ----------------------IFTRVGAAD----SQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGR 642 (813)
Q Consensus 592 --~~~~d~----------------------i~~~~~~~d----~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~ 642 (813)
.++.+. ++..+++.+ .+......+|+++++...+++. +.+|+++|||||++
T Consensus 99 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~ 178 (253)
T PRK14242 99 FPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPAS 178 (253)
T ss_pred CcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 011121 222333322 2234456788888877666654 68999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
|+|+.....+.. ++..+.+ +.++|++||+.+.. .+++++..+.+|++..
T Consensus 179 ~LD~~~~~~l~~-~l~~~~~--~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14242 179 ALDPIATQKIEE-LIHELKA--RYTIIIVTHNMQQAARVSDVTAFFYMGKLIE 228 (253)
T ss_pred cCCHHHHHHHHH-HHHHHhc--CCeEEEEEecHHHHHHhCCEEEEEECCEEEE
Confidence 999988777755 4555543 68999999998665 6788877777776653
No 196
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.70 E-value=1.5e-16 Score=168.29 Aligned_cols=168 Identities=16% Similarity=0.196 Sum_probs=111.1
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh-hhhhcc-----------------
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV-FLAQIG----------------- 582 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~-~laq~g----------------- 582 (813)
.+.+++....+ +...+.++++|++.+|++++|+||||||||||+|+++++. .-...|
T Consensus 7 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T CHL00131 7 ILEIKNLHASV-----NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81 (252)
T ss_pred eEEEEeEEEEe-----CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhh
Confidence 45666554322 1246899999999999999999999999999999998752 101111
Q ss_pred -----ccccCCccc---hh----------------------------HHHHHHHhcCCch-hHhhccc-hhHHHHHHHHH
Q psy5289 583 -----CFVPCDSAT---IS----------------------------VVDQIFTRVGAAD-SQYRGIS-TFMMEMKETAT 624 (813)
Q Consensus 583 -----~~vpa~~~~---~~----------------------------~~d~i~~~~~~~d-~~~~~~s-~f~~e~~~~~~ 624 (813)
.++|..... .. .+..++..+++.+ .+..... .+|+++++...
T Consensus 82 ~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 161 (252)
T CHL00131 82 AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE 161 (252)
T ss_pred heeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence 122221100 00 0122344555542 2333443 48888777666
Q ss_pred HHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-h-cCCCCceEeeEEEEE
Q psy5289 625 VIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-L-SRVIPTFRNVQVSAL 695 (813)
Q Consensus 625 il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~-~~~~~~v~~~~~~~~ 695 (813)
+++. +.+|+++|+|||++|+|+.....+.. ++..+.+ .|.++|++||+.++.. + ++++..+.+|++...
T Consensus 162 la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 162 ILQMALLDSELAILDETDSGLDIDALKIIAE-GINKLMT-SENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHh-CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 5554 68999999999999999988777754 5555555 5899999999988776 3 576666777776544
No 197
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=5.9e-17 Score=161.09 Aligned_cols=139 Identities=14% Similarity=0.094 Sum_probs=91.6
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccc-cccCCcc----------chhHH---HHHHHhcCCc
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC-FVPCDSA----------TISVV---DQIFTRVGAA 605 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~-~vpa~~~----------~~~~~---d~i~~~~~~~ 605 (813)
.+.++++|++.+|++++|+||||||||||+|+++++.... .|. .+..... .++++ ..++. ....
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~ 93 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIR 93 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHH
Confidence 5778999999999999999999999999999997754321 121 1110000 00000 01111 1222
Q ss_pred hhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCC
Q psy5289 606 DSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVI 684 (813)
Q Consensus 606 d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~ 684 (813)
|++ +|+++++...+++ .+.+|+++|||||++|+|+.....+.. ++..+.+ ++++|++||+++....++++
T Consensus 94 e~l------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~--~~tii~~sh~~~~~~~~d~~ 164 (171)
T cd03228 94 ENI------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE-ALRALAK--GKTVIVIAHRLSTIRDADRI 164 (171)
T ss_pred HHh------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH-HHHHhcC--CCEEEEEecCHHHHHhCCEE
Confidence 332 6666666655554 568999999999999999987776644 5555543 68999999998877666655
Q ss_pred CceEe
Q psy5289 685 PTFRN 689 (813)
Q Consensus 685 ~~v~~ 689 (813)
..+.+
T Consensus 165 ~~l~~ 169 (171)
T cd03228 165 IVLDD 169 (171)
T ss_pred EEEcC
Confidence 44443
No 198
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.69 E-value=9.3e-17 Score=175.85 Aligned_cols=156 Identities=18% Similarity=0.103 Sum_probs=113.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------hhccccccCCcc----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------AQIGCFVPCDSA---- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------aq~g~~vpa~~~---- 590 (813)
..+.++++|++.+|++++|+||||||||||+|+|+++... .++ .+|+.+..
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i-~~v~Q~~~~~l~ 112 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDI-QMIFQDPLASLN 112 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCce-EEEecCchhhcC
Confidence 4578999999999999999999999999999999654210 011 22332210
Q ss_pred -chhH-----------------------HHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q psy5289 591 -TISV-----------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGT 644 (813)
Q Consensus 591 -~~~~-----------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gt 644 (813)
..++ +..++.++++. +........+|++|+|...|++. +.+|+|+|+|||++|+
T Consensus 113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~L 192 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 192 (331)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 1111 12345566663 34556677899999887776665 6899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEE
Q psy5289 645 STFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALE 696 (813)
Q Consensus 645 d~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~ 696 (813)
|+.....+.. ++..+.++.|.++|++|||++++. +++++..+.+|++....
T Consensus 193 D~~~~~~i~~-lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 193 DVSIQAQVVN-LLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred CHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9988777755 555565535899999999988775 78888778888776543
No 199
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.69 E-value=1.4e-16 Score=169.16 Aligned_cols=153 Identities=15% Similarity=0.114 Sum_probs=104.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhc-----c--ccccCCc---cchhHH-------------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQI-----G--CFVPCDS---ATISVV------------- 595 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~-----g--~~vpa~~---~~~~~~------------- 595 (813)
..+.++++|++.+|++++|+||||||||||+++++++...... | .+++... ...++.
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~ 116 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFK 116 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCC
Confidence 4577899999999999999999999999999999765321110 0 0111000 011111
Q ss_pred --------HHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCC
Q psy5289 596 --------DQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQP 666 (813)
Q Consensus 596 --------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~ 666 (813)
+.++..+++.+.+.....++|+++++...+++ .+.+|+++|||||++|+|+.....+.. ++..+.+ .|.
T Consensus 117 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~-~L~~~~~-~g~ 194 (264)
T PRK13546 117 RKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLD-KIYEFKE-QNK 194 (264)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHH-HHHHHHH-CCC
Confidence 12334445555566667788888777655544 468999999999999999977666655 4444554 589
Q ss_pred EEEEEcCChHHH-hhcCCCCceEeeEEE
Q psy5289 667 FTLFATHFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 667 ~~l~~TH~~el~-~~~~~~~~v~~~~~~ 693 (813)
++|++||+.+.. .+++++..+.+|++.
T Consensus 195 tiIiisH~~~~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 195 TIFFVSHNLGQVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred EEEEEcCCHHHHHHHcCEEEEEECCEEE
Confidence 999999997764 577876666666553
No 200
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.69 E-value=1.3e-16 Score=165.94 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=105.6
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh---h-hh----------------ccccccCCcc---chhHH
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF---L-AQ----------------IGCFVPCDSA---TISVV 595 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~---l-aq----------------~g~~vpa~~~---~~~~~ 595 (813)
..+.++++|++.+|++++|+||||||||||+|++++... . +. .-.++|.... .+++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 457889999999999999999999999999999976543 1 10 0123333211 11222
Q ss_pred HH-------------------------HHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q psy5289 596 DQ-------------------------IFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 596 d~-------------------------i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~ 649 (813)
+. ++..++..+......+.+|+++++...+++ .+.+|+++|||||++|+|+...
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~ 179 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHH
Confidence 21 222233333333445677777776655544 4689999999999999999887
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCh--HHHhhcCCCCceEeeEEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFH--EIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~--el~~~~~~~~~v~~~~~~ 693 (813)
..+.. ++..+.+ .+.++|++||+. ++..+++++..+.+|++.
T Consensus 180 ~~~~~-~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 180 LNLVS-TLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223 (226)
T ss_pred HHHHH-HHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEE
Confidence 77755 5555555 488999999996 677889988778887765
No 201
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.69 E-value=1.1e-16 Score=167.70 Aligned_cols=153 Identities=12% Similarity=0.072 Sum_probs=103.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--------------------hccccccCCcc--chhHHH
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--------------------QIGCFVPCDSA--TISVVD 596 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--------------------q~g~~vpa~~~--~~~~~d 596 (813)
.++.++++|++.+|++++|+||||||||||+|+++++.... +.-.++|.... ..++.+
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 94 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRD 94 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHH
Confidence 35778999999999999999999999999999997542110 01123333221 011111
Q ss_pred HH---------------HHhcCCch-----------hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 597 QI---------------FTRVGAAD-----------SQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 597 ~i---------------~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
.+ ....++.+ .+.....++|+++++...+++. +.+|+++|||||++|+|+...
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~ 174 (237)
T cd03252 95 NIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174 (237)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 11 11122221 2233457788888887666654 689999999999999999887
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~ 694 (813)
..+.. ++..+.+ |+++|++||+.+....++++..+.+|++..
T Consensus 175 ~~l~~-~l~~~~~--~~tiii~sH~~~~~~~~d~v~~l~~G~i~~ 216 (237)
T cd03252 175 HAIMR-NMHDICA--GRTVIIIAHRLSTVKNADRIIVMEKGRIVE 216 (237)
T ss_pred HHHHH-HHHHhcC--CCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 77755 4444543 789999999988877777777677776654
No 202
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.1e-16 Score=171.57 Aligned_cols=154 Identities=19% Similarity=0.092 Sum_probs=110.9
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc----chhHH
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA----TISVV 595 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~----~~~~~ 595 (813)
.+.++++|++.+|++++|+||||||||||+++++++... .+.-.++|.... ..++.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 478899999999999999999999999999999654210 011123333210 11111
Q ss_pred ---------------------HHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHH
Q psy5289 596 ---------------------DQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMA 653 (813)
Q Consensus 596 ---------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~ 653 (813)
+.++..+|+.+........+|+++++...+++. +.+|+++|||||++|+|+.....+.
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~ 180 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 233445565555566677888888887776665 6899999999999999998888775
Q ss_pred HHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEE
Q psy5289 654 CSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 654 ~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~ 694 (813)
. ++..+.++.|.++|++||+.+....++++..+.+|.+..
T Consensus 181 ~-~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~ 220 (277)
T PRK13642 181 R-VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIK 220 (277)
T ss_pred H-HHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 5 555565534899999999988877788777777776654
No 203
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.69 E-value=8.9e-17 Score=181.34 Aligned_cols=155 Identities=16% Similarity=0.096 Sum_probs=111.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhc-----c---------ccccCCcc-----------ch-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQI-----G---------CFVPCDSA-----------TI- 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~-----g---------~~vpa~~~-----------~~- 592 (813)
.++.++++|++.+|++++|+||||||||||||+++++...... | .+.|.... ..
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~ 116 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLT 116 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCC
Confidence 3578899999999999999999999999999999765321100 0 01110000 00
Q ss_pred -----hHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCC
Q psy5289 593 -----SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQP 666 (813)
Q Consensus 593 -----~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~ 666 (813)
..++.++..+++.+.+......+|+++++...+++ .+.+|+++|||||++|+|+.....+.. ++..+.+ .|+
T Consensus 117 ~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~Lle-lL~el~~-~G~ 194 (549)
T PRK13545 117 KEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLD-KMNEFKE-QGK 194 (549)
T ss_pred HHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH-HHHHHHh-CCC
Confidence 01223556677777777778899998888766655 468999999999999999987777655 4555555 589
Q ss_pred EEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 667 FTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 667 ~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
++|++||+++.. .+++++..+.+|++...
T Consensus 195 TIIIVSHdl~~i~~l~DrIivL~~GkIv~~ 224 (549)
T PRK13545 195 TIFFISHSLSQVKSFCTKALWLHYGQVKEY 224 (549)
T ss_pred EEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999997665 57888777777776543
No 204
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.69 E-value=1.1e-16 Score=160.09 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=114.2
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhcc-ccccCCcc---chh
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIG-CFVPCDSA---TIS 593 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g-~~vpa~~~---~~~ 593 (813)
...+..+++|+.+.|++++|+||||+||||+||+|++++.. +..| ++||.... .++
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LT 94 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLT 94 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCc
Confidence 35688899999999999999999999999999999755321 1122 34553321 111
Q ss_pred H--------------------HHHHHHhcC-CchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q psy5289 594 V--------------------VDQIFTRVG-AADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFG 651 (813)
Q Consensus 594 ~--------------------~d~i~~~~~-~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~ 651 (813)
+ .+.+|+.+- +.+.....-.++|++.+|+..|.+. +++|+|++||||+-|+.|.=...
T Consensus 95 VeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~ 174 (237)
T COG0410 95 VEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE 174 (237)
T ss_pred HHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHH
Confidence 1 333444443 3444445556778777776666655 68999999999999999987777
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 652 MACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 652 i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
|.. ++..+.++.|.+||++-++...+ +++|+...+.+|++.....
T Consensus 175 I~~-~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~ 220 (237)
T COG0410 175 IFE-AIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGT 220 (237)
T ss_pred HHH-HHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecC
Confidence 755 55567754578999999997766 4888888888888876654
No 205
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.69 E-value=1.7e-16 Score=162.94 Aligned_cols=139 Identities=17% Similarity=0.136 Sum_probs=99.6
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------hhccccccCCcc---chhH---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------AQIGCFVPCDSA---TISV--- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------aq~g~~vpa~~~---~~~~--- 594 (813)
..+.++++|++.+|++++|+||||||||||+++++++... .++ .++|.... ..++
T Consensus 15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~tv~~~ 93 (207)
T PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC-HYLGHRNAMKPALTVAEN 93 (207)
T ss_pred eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhc-EEecCCCcCCCCCcHHHH
Confidence 4578899999999999999999999999999999654210 011 23332210 0111
Q ss_pred --------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q psy5289 595 --------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARE 659 (813)
Q Consensus 595 --------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~ 659 (813)
+..++..+|+.+.......++|+++++...+++. +.+|+++|+|||++|+|+.....+.. ++..
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~ 172 (207)
T PRK13539 94 LEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE-LIRA 172 (207)
T ss_pred HHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHH
Confidence 2334556666655556667888888776665554 68999999999999999988777744 5555
Q ss_pred HHhcCCCEEEEEcCChHHHhh
Q psy5289 660 LASHRQPFTLFATHFHEIALL 680 (813)
Q Consensus 660 l~~~~~~~~l~~TH~~el~~~ 680 (813)
+.+ .|.++|++||+.+....
T Consensus 173 ~~~-~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 173 HLA-QGGIVIAATHIPLGLPG 192 (207)
T ss_pred HHH-CCCEEEEEeCCchhhcc
Confidence 555 48999999999876654
No 206
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.1e-16 Score=186.19 Aligned_cols=157 Identities=14% Similarity=0.123 Sum_probs=115.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---h--------------------hccccccCCcc---ch
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---A--------------------QIGCFVPCDSA---TI 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---a--------------------q~g~~vpa~~~---~~ 592 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... . +.-.++|.... .+
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 97 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKEL 97 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCC
Confidence 4688999999999999999999999999999999765431 0 00112332210 00
Q ss_pred h------------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChh
Q psy5289 593 S------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTF 647 (813)
Q Consensus 593 ~------------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~ 647 (813)
+ .+..++.++++.+......+++|+++++...+++. +.+|+++|||||++|+|+.
T Consensus 98 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~ 177 (506)
T PRK13549 98 SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTES 177 (506)
T ss_pred cHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 1 12335566676655666778899988887766665 6899999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 648 DGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 648 d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
....+.. ++..+.+ .|.++|++||+.+.. .+++++..+.+|++.....
T Consensus 178 ~~~~l~~-~l~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 178 ETAVLLD-IIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHHH-HHHHHHH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 8777754 5555665 588999999997665 5788888888888765443
No 207
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.4e-16 Score=168.18 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=111.9
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----hhcc-------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----AQIG------------- 582 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----aq~g------------- 582 (813)
+.|.+++....+ +...+.++++|++.+|++++|+||||||||||+|+++++... ...|
T Consensus 18 ~~l~~~nl~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 18 IKMRARDVSVFY-----GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred ceEEEEeEEEEE-----CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 456666654332 124688999999999999999999999999999999765421 0111
Q ss_pred ----------ccccCCccc--hhHH-----------------------HHHHHhcCCch----hHhhccchhHHHHHHHH
Q psy5289 583 ----------CFVPCDSAT--ISVV-----------------------DQIFTRVGAAD----SQYRGISTFMMEMKETA 623 (813)
Q Consensus 583 ----------~~vpa~~~~--~~~~-----------------------d~i~~~~~~~d----~~~~~~s~f~~e~~~~~ 623 (813)
.++|....- .++. ..++..+++.+ .+.....++|+++++..
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 172 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRL 172 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 123322110 0111 12333444432 23345567888887766
Q ss_pred HHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 624 TVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 624 ~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
.+++. +.+|+++|||||++|+|+.....+.. ++..+.+ +.++|++||+.+.. .+++++..+.+|++..
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~ 242 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSALDPIATAKVEE-LIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFHLGNLVE 242 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 65554 68999999999999999987776644 5555554 67999999998766 5778777777776653
No 208
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.69 E-value=1.6e-16 Score=163.65 Aligned_cols=150 Identities=14% Similarity=0.073 Sum_probs=99.7
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhcccc-------ccC-----CccchhHHHHH----------
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCF-------VPC-----DSATISVVDQI---------- 598 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~-------vpa-----~~~~~~~~d~i---------- 598 (813)
|.++++|++++|++++|+||||||||||+|+++++... .-|.. ++. -...+++.+.+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP-DEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLD 80 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-CCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCC
Confidence 57899999999999999999999999999999765321 11110 000 00011211211
Q ss_pred --------HHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEE
Q psy5289 599 --------FTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTL 669 (813)
Q Consensus 599 --------~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l 669 (813)
....++.+......+.++++|++...+++ .+.+|+++|+|||+.+.|+.....+.+.+.+.+. +.++|
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~---~~~ii 157 (213)
T PRK15177 81 GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ---QKGLI 157 (213)
T ss_pred HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh---CCcEE
Confidence 11223333334455678888877655444 4689999999999999999887776555555443 34689
Q ss_pred EEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 670 FATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 670 ~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
++||+++.. .+++++..+.+|++..
T Consensus 158 ~vsH~~~~~~~~~d~i~~l~~G~i~~ 183 (213)
T PRK15177 158 VLTHNPRLIKEHCHAFGVLLHGKITM 183 (213)
T ss_pred EEECCHHHHHHhcCeeEEEECCeEEE
Confidence 999998766 5788776666666653
No 209
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=9.5e-17 Score=177.62 Aligned_cols=152 Identities=17% Similarity=0.130 Sum_probs=112.6
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-------------------------hccccccCCcc---chh--
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------------------------QIGCFVPCDSA---TIS-- 593 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-------------------------q~g~~vpa~~~---~~~-- 593 (813)
+++|++.+|++++|+||||||||||||+++++.... ++ .++|.... ..+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i-~~v~q~~~l~~~~tv~ 94 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI-GYVFQDARLFPHYKVR 94 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCE-EEEcCCcccCCCCcHH
Confidence 799999999999999999999999999997642110 01 12332211 111
Q ss_pred -------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q psy5289 594 -------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARE 659 (813)
Q Consensus 594 -------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~ 659 (813)
.++.++..+|+.+.......++|++++|...+++. +.+|+++|||||++|+|+.....+.. ++..
T Consensus 95 enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~-~L~~ 173 (352)
T PRK11144 95 GNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLP-YLER 173 (352)
T ss_pred HHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH-HHHH
Confidence 12345677788777777888999888887666655 68999999999999999988777755 4555
Q ss_pred HHhcCCCEEEEEcCChH-HHhhcCCCCceEeeEEEEEEE
Q psy5289 660 LASHRQPFTLFATHFHE-IALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 660 l~~~~~~~~l~~TH~~e-l~~~~~~~~~v~~~~~~~~~~ 697 (813)
+.++.|.++|++||+.+ +..+++++..+.+|++....+
T Consensus 174 l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~ 212 (352)
T PRK11144 174 LAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212 (352)
T ss_pred HHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecC
Confidence 55435889999999976 456889888888998876543
No 210
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.69 E-value=1.1e-16 Score=186.14 Aligned_cols=156 Identities=17% Similarity=0.196 Sum_probs=116.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--------------------hc-cccccCCcc---chh-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--------------------QI-GCFVPCDSA---TIS- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--------------------q~-g~~vpa~~~---~~~- 593 (813)
..+.++++|++.+|++++|+||||||||||||+++++.... .. -.|+|.... ..+
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 103 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSV 103 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcH
Confidence 45789999999999999999999999999999997542110 00 113443211 011
Q ss_pred ----------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHH
Q psy5289 594 ----------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSI 656 (813)
Q Consensus 594 ----------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i 656 (813)
.+..++..+++.+......+++|+++++...+++. +.+|+++|||||++|+|+.....+.. +
T Consensus 104 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~-~ 182 (510)
T PRK15439 104 KENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFS-R 182 (510)
T ss_pred HHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHH-H
Confidence 12335666777666677788999999887777665 68999999999999999988777744 5
Q ss_pred HHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEE
Q psy5289 657 ARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 657 ~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~ 696 (813)
+..+.+ .|.++|++||+.+.. .+++++..+.+|++....
T Consensus 183 l~~~~~-~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g 222 (510)
T PRK15439 183 IRELLA-QGVGIVFISHKLPEIRQLADRISVMRDGTIALSG 222 (510)
T ss_pred HHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 555665 489999999997765 678988888899886543
No 211
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.69 E-value=1.6e-16 Score=176.02 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=111.2
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh------------------------hccccccCCcc---chhH--
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA------------------------QIGCFVPCDSA---TISV-- 594 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la------------------------q~g~~vpa~~~---~~~~-- 594 (813)
+++|++.+|++++|+||||||||||||+++++.... ..-.++|.... ..++
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 789999999999999999999999999997542110 00112332211 0111
Q ss_pred -----------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHH
Q psy5289 595 -----------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSI 656 (813)
Q Consensus 595 -----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i 656 (813)
++.++..+|+.+.......++|++++|...+++. +.+|+++|||||++|+|+.....+.. +
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~-~ 173 (354)
T TIGR02142 95 NLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILP-Y 173 (354)
T ss_pred HHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH-H
Confidence 2345666777776777788899888887666655 68999999999999999988777755 4
Q ss_pred HHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEE
Q psy5289 657 ARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 657 ~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~ 696 (813)
+..+.++.|.++|++||+.+.. .+++++..+.+|++....
T Consensus 174 L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g 214 (354)
T TIGR02142 174 LERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAG 214 (354)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEEC
Confidence 5555543488999999997665 578988889999887553
No 212
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.9e-16 Score=165.47 Aligned_cols=154 Identities=18% Similarity=0.089 Sum_probs=109.6
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh------------------hccccccCCccc---hh----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA------------------QIGCFVPCDSAT---IS---- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la------------------q~g~~vpa~~~~---~~---- 593 (813)
..+.++++|++.+|++++|+||||||||||+|++++..... ..-.++|.+... .+
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n 92 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFEN 92 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHH
Confidence 35788999999999999999999999999999997542210 011223322110 01
Q ss_pred -----------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q psy5289 594 -----------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACS 655 (813)
Q Consensus 594 -----------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~ 655 (813)
.++.++.++|+.+.+......+|+++++...+++ .+.+|+++|||||++|+|+.....+..
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~- 171 (232)
T cd03300 93 IAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQL- 171 (232)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-
Confidence 1223456667766666677788887777655555 468999999999999999988777644
Q ss_pred HHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEE
Q psy5289 656 IARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVS 693 (813)
Q Consensus 656 i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~ 693 (813)
++..+.++.|+++|++||+.+. ..+++++..+.+|++.
T Consensus 172 ~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~ 210 (232)
T cd03300 172 ELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210 (232)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 5555554348999999999875 5678887777777664
No 213
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.69 E-value=1.3e-16 Score=185.31 Aligned_cols=156 Identities=17% Similarity=0.174 Sum_probs=115.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------------------hhccccccCCcc---chh
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------------------AQIGCFVPCDSA---TIS 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----------------------aq~g~~vpa~~~---~~~ 593 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .++| ++|.... .++
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~t 95 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG-IIHQELNLIPQLT 95 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE-EEEcchhccCCCc
Confidence 4578899999999999999999999999999999754210 0111 2222110 001
Q ss_pred -------------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChh
Q psy5289 594 -------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTF 647 (813)
Q Consensus 594 -------------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~ 647 (813)
.+..++.++|+.+......+++|+++++...+++. +.+|+++||||||+|+|+.
T Consensus 96 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 175 (501)
T PRK10762 96 IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175 (501)
T ss_pred HHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHH
Confidence 12345666777666666778999998887776665 6899999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 648 DGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 648 d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
....+.. ++..+.+ .|.++|++||+.+.. .+++++..+.+|++.....
T Consensus 176 ~~~~l~~-~l~~l~~-~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~ 224 (501)
T PRK10762 176 ETESLFR-VIRELKS-QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAERE 224 (501)
T ss_pred HHHHHHH-HHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecC
Confidence 8777744 5666665 588999999997655 6889888888988865443
No 214
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.69 E-value=2.1e-16 Score=183.41 Aligned_cols=155 Identities=12% Similarity=0.035 Sum_probs=115.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--------------------hccccccCCcc--------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--------------------QIGCFVPCDSA-------- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--------------------q~g~~vpa~~~-------- 590 (813)
..+.++++|++.+|++++|+||||||||||||+++++.... +.-.++|....
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 95 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGE 95 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccch
Confidence 35889999999999999999999999999999997542110 00112222100
Q ss_pred ---chh-------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHH
Q psy5289 591 ---TIS-------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMA 653 (813)
Q Consensus 591 ---~~~-------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~ 653 (813)
... .+..++.++|+.+......+++|+++++...+++. +.+|+++||||||+|+|+.....+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 175 (490)
T PRK10938 96 DDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLA 175 (490)
T ss_pred hhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH
Confidence 001 12346677888777777889999999887776665 6899999999999999998877774
Q ss_pred HHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 654 CSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 654 ~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
. ++..+.+ .|.++|++||+.+.. .+++++..+.+|++...
T Consensus 176 ~-~l~~~~~-~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 216 (490)
T PRK10938 176 E-LLASLHQ-SGITLVLVLNRFDEIPDFVQFAGVLADCTLAET 216 (490)
T ss_pred H-HHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe
Confidence 4 5555665 488999999997654 57888888888887543
No 215
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.9e-16 Score=167.51 Aligned_cols=168 Identities=14% Similarity=0.097 Sum_probs=113.5
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----hhc--------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----AQI-------------- 581 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----aq~-------------- 581 (813)
..+.+++...-+ +...+.++++|++.+|++++|+||||||||||||++++.... ..-
T Consensus 19 ~~l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 19 IALSTKDLHVYY-----GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred eEEEEeeEEEEE-----CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 456666554322 235689999999999999999999999999999999875421 001
Q ss_pred ---------cccccCCccc--hhHHHH----------------------HHHhcCCc----hhHhhccchhHHHHHHHHH
Q psy5289 582 ---------GCFVPCDSAT--ISVVDQ----------------------IFTRVGAA----DSQYRGISTFMMEMKETAT 624 (813)
Q Consensus 582 ---------g~~vpa~~~~--~~~~d~----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~ 624 (813)
-.++|....- .++.+. ++..+++. +.+.....++|+++++...
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~ 173 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC 173 (267)
T ss_pred CChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence 1233332110 111111 22333332 2334556778888877666
Q ss_pred HHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 625 VIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 625 il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
+++. +.+|+++|||||++|+|+.....+.. ++..+.+ +.++|++||+.+.. .+++++..+.+|++...
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~--~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLEE-TMFELKK--NYTIIIVTHNMQQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhc--CCEEEEEecCHHHHHHhcCEEEEEECCEEEEe
Confidence 6554 68999999999999999987776654 4555543 68999999998665 68888877888877644
No 216
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.4e-16 Score=172.01 Aligned_cols=154 Identities=14% Similarity=0.077 Sum_probs=107.5
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-------------------------hccccccCCcc----
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------------------------QIGCFVPCDSA---- 590 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-------------------------q~g~~vpa~~~---- 590 (813)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.++|....
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 104 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence 4888999999999999999999999999999996542110 00123333310
Q ss_pred chhH---------------------HHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChh
Q psy5289 591 TISV---------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTF 647 (813)
Q Consensus 591 ~~~~---------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~ 647 (813)
..++ ++.++..+++. +......+.+|+++++...+++. +.+|+++|||||++|+|+.
T Consensus 105 ~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~ 184 (289)
T PRK13645 105 QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPK 184 (289)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 0111 11234445553 34445567888888887666654 6899999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEE
Q psy5289 648 DGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 648 d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~ 694 (813)
....+.. ++..+.+..|+++|++||+.+. ..+++++..+.+|++..
T Consensus 185 ~~~~l~~-~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 231 (289)
T PRK13645 185 GEEDFIN-LFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS 231 (289)
T ss_pred HHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 7766644 5555544248899999999875 46788877777777653
No 217
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.5e-16 Score=166.48 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=106.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh--hhh--hcc-----------------------ccccCCccc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV--FLA--QIG-----------------------CFVPCDSAT 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~--~la--q~g-----------------------~~vpa~~~~ 591 (813)
..+.++++|++.+|++++|+||||||||||+|+++++. ... ..| .++|....-
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 45788999999999999999999999999999997541 000 011 223322110
Q ss_pred --hhHH----------------------HHHHHhcCCch----hHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q psy5289 592 --ISVV----------------------DQIFTRVGAAD----SQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGR 642 (813)
Q Consensus 592 --~~~~----------------------d~i~~~~~~~d----~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~ 642 (813)
.++. +.++..+++.+ .+......+|+++++...+++ .+.+|+++|||||++
T Consensus 96 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 175 (250)
T PRK14245 96 FPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS 175 (250)
T ss_pred CcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 0111 12333444432 233445678888777665555 468999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~ 696 (813)
|+|+.....+.. ++..+.+ ++++|++||+.+.. .+++++..+.+|++....
T Consensus 176 ~LD~~~~~~l~~-~l~~~~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 176 ALDPISTAKVEE-LIHELKK--DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred cCCHHHHHHHHH-HHHHHhc--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEEC
Confidence 999988777654 4445543 68999999998765 678888878888776543
No 218
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=5e-17 Score=164.01 Aligned_cols=161 Identities=15% Similarity=0.065 Sum_probs=117.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------hhccccccCCccc--h---------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------------AQIGCFVPCDSAT--I--------- 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------------aq~g~~vpa~~~~--~--------- 592 (813)
-++++|++|+..+|+.++|+|+||||||||||.|+++... +-.+.|-|.-.+. +
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~ 119 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGL 119 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCc
Confidence 4688999999999999999999999999999999765321 2122344432221 0
Q ss_pred ------hHHHHHHHhcCCchhHhhccchhHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q psy5289 593 ------SVVDQIFTRVGAADSQYRGISTFMMEMK-ETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQ 665 (813)
Q Consensus 593 ------~~~d~i~~~~~~~d~~~~~~s~f~~e~~-~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~ 665 (813)
..++.|..--.+.+.+..+..++|.+|. |++..++...+|+++||||..+--|+.-.......+-+... .+
T Consensus 120 ~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~--~~ 197 (249)
T COG1134 120 TRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE--KN 197 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHH--cC
Confidence 1124454445567788889999999997 56777777899999999999776666554444343444333 36
Q ss_pred CEEEEEcCChHHH-hhcCCCCceEeeEEEEEEECCeE
Q psy5289 666 PFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQEDNL 701 (813)
Q Consensus 666 ~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~~~~i 701 (813)
.++++|||+++.. ++|++...+++|++...++.+++
T Consensus 198 ~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~v 234 (249)
T COG1134 198 KTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEV 234 (249)
T ss_pred CEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHH
Confidence 8999999997665 58999999999998876654433
No 219
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3.1e-16 Score=165.76 Aligned_cols=153 Identities=15% Similarity=0.165 Sum_probs=106.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----hhcc---------------------ccccCCcc---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----AQIG---------------------CFVPCDSA--- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----aq~g---------------------~~vpa~~~--- 590 (813)
..+.++++|++.+|++++|+||||||||||+++++++... ...| .++|....
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 4578899999999999999999999999999999765321 0011 13332211
Q ss_pred chhHHHH-----------------------HHHhcCCc----hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q psy5289 591 TISVVDQ-----------------------IFTRVGAA----DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGR 642 (813)
Q Consensus 591 ~~~~~d~-----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~ 642 (813)
..++.+. ++..+++. +.+.....++|+++++...+++. +.+|+++|||||++
T Consensus 96 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~ 175 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTA 175 (250)
T ss_pred CCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 1122222 23334432 12344557788888877666654 68999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
|+|+.....+.. ++..+.+ +.++|++||+.+.. .+++++..+.+|++..
T Consensus 176 ~LD~~~~~~l~~-~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 176 NLDPENTAKIES-LFLELKK--DMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225 (250)
T ss_pred cCCHHHHHHHHH-HHHHHhc--CCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence 999988777755 4445543 78999999998765 6788877777777654
No 220
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.68 E-value=2.4e-16 Score=160.89 Aligned_cols=142 Identities=13% Similarity=0.091 Sum_probs=99.6
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hhhccccccCCcc---chhH-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LAQIGCFVPCDSA---TISV- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------laq~g~~vpa~~~---~~~~- 594 (813)
..+.++++|++.+|++++|+||||||||||+|++++... ..++| ++|.... ..++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~ 92 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLC-FVGHRSGINPYLTLR 92 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheE-EeccccccCcCCCHH
Confidence 357889999999999999999999999999999965421 11222 2332110 1111
Q ss_pred ---------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHH
Q psy5289 595 ---------------VDQIFTRVGAADSQYRGISTFMMEMKETATVI-KKCTENSLVIIDELGRGTSTFDGFGMACSIAR 658 (813)
Q Consensus 595 ---------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il-~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~ 658 (813)
++.++..++..+........+|+++++...++ ..+.+|+++|+|||++|+|+.....+.. ++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~-~l~ 171 (200)
T PRK13540 93 ENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIIT-KIQ 171 (200)
T ss_pred HHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH-HHH
Confidence 23355556665555555667887766655444 4578999999999999999988777655 444
Q ss_pred HHHhcCCCEEEEEcCChHHHhhcCC
Q psy5289 659 ELASHRQPFTLFATHFHEIALLSRV 683 (813)
Q Consensus 659 ~l~~~~~~~~l~~TH~~el~~~~~~ 683 (813)
.+.+ .|+++|++||+.++...+|.
T Consensus 172 ~~~~-~~~tiii~sh~~~~~~~~d~ 195 (200)
T PRK13540 172 EHRA-KGGAVLLTSHQDLPLNKADY 195 (200)
T ss_pred HHHH-cCCEEEEEeCCchhccccch
Confidence 4555 58899999999888876654
No 221
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.68 E-value=2.7e-16 Score=165.98 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=99.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh-hhhcc----------------------ccccCCccchh--
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-LAQIG----------------------CFVPCDSATIS-- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~-laq~g----------------------~~vpa~~~~~~-- 593 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.. -...| .++|......+
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV 93 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence 357889999999999999999999999999999987631 11111 12222210000
Q ss_pred -----------------------------HHHHHHHhcCCchh-Hhhcc-chhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q psy5289 594 -----------------------------VVDQIFTRVGAADS-QYRGI-STFMMEMKETATVIKK-CTENSLVIIDELG 641 (813)
Q Consensus 594 -----------------------------~~d~i~~~~~~~d~-~~~~~-s~f~~e~~~~~~il~~-~~~~~LlllDEp~ 641 (813)
.++.++..++..+. ..... +.+|+++++...+++. +.+|+++|||||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt 173 (248)
T PRK09580 94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD 173 (248)
T ss_pred hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 00112222222211 11222 2688888776666554 6899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhh--cCCCCceEeeEEE
Q psy5289 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALL--SRVIPTFRNVQVS 693 (813)
Q Consensus 642 ~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~--~~~~~~v~~~~~~ 693 (813)
+|+|+.....+.. ++..+.+ .++++|++||++++... ++++..+.+|++.
T Consensus 174 ~~LD~~~~~~l~~-~l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~ 225 (248)
T PRK09580 174 SGLDIDALKIVAD-GVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 225 (248)
T ss_pred ccCCHHHHHHHHH-HHHHHHh-CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEE
Confidence 9999987776644 5555665 58899999999887764 5655545555443
No 222
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.68 E-value=2.5e-16 Score=168.05 Aligned_cols=154 Identities=10% Similarity=0.053 Sum_probs=107.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhccccccCCccch--hH---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQIGCFVPCDSATI--SV--- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~g~~vpa~~~~~--~~--- 594 (813)
.++.++++|++.+|++++|+||||||||||+|+++.+... ...-.++|....-+ ++
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~n 96 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN 96 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHH
Confidence 4578899999999999999999999999999999755321 01113344432110 11
Q ss_pred -----------HHHHHHhcCCchhHhhccc-----------hhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q psy5289 595 -----------VDQIFTRVGAADSQYRGIS-----------TFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFG 651 (813)
Q Consensus 595 -----------~d~i~~~~~~~d~~~~~~s-----------~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~ 651 (813)
+...+..+|+.+.+..... .+|+++++...+++. +.+|+++|||||++|+|+.....
T Consensus 97 l~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~ 176 (275)
T cd03289 97 LDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176 (275)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHH
Confidence 1223445565554444333 388888887666665 68999999999999999987766
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEE
Q psy5289 652 MACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 652 i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~ 695 (813)
+... +..+. .++++|++||+++....++++..+.+|.+...
T Consensus 177 l~~~-l~~~~--~~~tii~isH~~~~i~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 177 IRKT-LKQAF--ADCTVILSEHRIEAMLECQRFLVIEENKVRQY 217 (275)
T ss_pred HHHH-HHHhc--CCCEEEEEECCHHHHHhCCEEEEecCCeEeec
Confidence 6444 44343 37999999999988777887766666666543
No 223
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.8e-16 Score=184.65 Aligned_cols=156 Identities=12% Similarity=0.094 Sum_probs=114.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------------------hhccccccCCcc---chh
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------------------AQIGCFVPCDSA---TIS 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----------------------aq~g~~vpa~~~---~~~ 593 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .++ .++|.... .++
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i-~~v~q~~~~~~~~t 96 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI-GIIYQELSVIDELT 96 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe-EEEeecccccCCCc
Confidence 4578999999999999999999999999999999654210 012 23332210 001
Q ss_pred ----------------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q psy5289 594 ----------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGT 644 (813)
Q Consensus 594 ----------------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gt 644 (813)
.+..++.++|+.+......+++|+++++...+++. +.+|+++|||||++|+
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~L 176 (510)
T PRK09700 97 VLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176 (510)
T ss_pred HHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 12234556676666666778999998887776665 6899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 645 STFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 645 d~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
|+.....+.. ++..+.+ .|.++|++||+.+.. .+++++..+.+|++.....
T Consensus 177 D~~~~~~l~~-~l~~l~~-~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 177 TNKEVDYLFL-IMNQLRK-EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred CHHHHHHHHH-HHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecc
Confidence 9987777644 5666665 489999999997665 5788888888888865433
No 224
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3.5e-16 Score=165.59 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=105.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--h--hhc-----------------------cccccCCcc-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--L--AQI-----------------------GCFVPCDSA- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--l--aq~-----------------------g~~vpa~~~- 590 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.. . ... -.++|....
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 458899999999999999999999999999999977631 0 000 122333211
Q ss_pred --chhHH----------------------HHHHHhcCCch----hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q psy5289 591 --TISVV----------------------DQIFTRVGAAD----SQYRGISTFMMEMKETATVIKK-CTENSLVIIDELG 641 (813)
Q Consensus 591 --~~~~~----------------------d~i~~~~~~~d----~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~ 641 (813)
..++. ..++..+++.. ........+|+++++...+++. +.+|+++|||||+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 176 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPA 176 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 01111 12233444321 2334456788888776666654 6899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 642 ~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
+|+|+.....+.. +++.+.+ +.++|++||+.+.. .+++++..+.+|++...
T Consensus 177 ~gLD~~~~~~l~~-~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14256 177 SALDPISTLKIEE-LIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC 228 (252)
T ss_pred ccCCHHHHHHHHH-HHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999987776644 5555654 57999999998765 67888777777776543
No 225
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=2.4e-16 Score=165.02 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=107.8
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh------------------hccccccCCccc---hhH-----
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA------------------QIGCFVPCDSAT---ISV----- 594 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la------------------q~g~~vpa~~~~---~~~----- 594 (813)
+.++++|++.+|++++|+||||||||||+|+++++.... +.-.++|....- .++
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 577999999999999999999999999999996542110 011222222110 011
Q ss_pred ----------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q psy5289 595 ----------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIA 657 (813)
Q Consensus 595 ----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~ 657 (813)
+..++..+|+.+.+.....++|+++++...+++. +.+|+++|+|||++|+|+.....+ +.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l-~~~l 172 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL-REEL 172 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHH-HHHH
Confidence 1234556676666666777888887776665554 689999999999999999877666 4455
Q ss_pred HHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEE
Q psy5289 658 RELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 658 ~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~ 694 (813)
..+..+.++++|++||+.+. ..+++++..+.+|.+..
T Consensus 173 ~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 173 KKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 55654348999999999876 45788777777766643
No 226
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.68 E-value=1.9e-16 Score=166.16 Aligned_cols=151 Identities=13% Similarity=0.028 Sum_probs=101.9
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc--chhHHHH
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA--TISVVDQ 597 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~--~~~~~d~ 597 (813)
.+.++++|++.+|++++|+||||||||||+|++++.... .+.-.++|.... ..++.+.
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 96 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAEN 96 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHH
Confidence 577899999999999999999999999999999765211 011123333211 0111111
Q ss_pred H---------------HHhcCCch-----------hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 598 I---------------FTRVGAAD-----------SQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 598 i---------------~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
+ ....++.+ ........+|+++++...+++. +.+|+++|||||++|+|+....
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~ 176 (238)
T cd03249 97 IRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEK 176 (238)
T ss_pred hhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 1 11112211 1122345778888776666654 6899999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
.+.. ++..+. .|+++|++||+.+....++++..+.+|.+.
T Consensus 177 ~l~~-~l~~~~--~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~ 216 (238)
T cd03249 177 LVQE-ALDRAM--KGRTTIVIAHRLSTIRNADLIAVLQNGQVV 216 (238)
T ss_pred HHHH-HHHHhc--CCCEEEEEeCCHHHHhhCCEEEEEECCEEE
Confidence 7644 455454 388999999998887788877777777664
No 227
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.4e-16 Score=166.24 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=105.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--hhhc---------------------cccccCCccc--hh
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--LAQI---------------------GCFVPCDSAT--IS 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--laq~---------------------g~~vpa~~~~--~~ 593 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.. .... -.++|....- .+
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~t 94 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKS 94 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccccc
Confidence 457889999999999999999999999999999976531 0000 1233332110 01
Q ss_pred H-----------------------HHHHHHhcCCc----hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q psy5289 594 V-----------------------VDQIFTRVGAA----DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTS 645 (813)
Q Consensus 594 ~-----------------------~d~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd 645 (813)
+ +..++..+++. +........+++++++...+++. +.+|+++|||||++|+|
T Consensus 95 v~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD 174 (246)
T PRK14269 95 IYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALD 174 (246)
T ss_pred HHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 1 12344555553 22344556788887776666554 68999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 646 TFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 646 ~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
+.....+.. ++..+.+ +.++|++||+.+.. .+++++..+.+|++..
T Consensus 175 ~~~~~~l~~-~l~~~~~--~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 221 (246)
T PRK14269 175 PISSGVIEE-LLKELSH--NLSMIMVTHNMQQGKRVADYTAFFHLGELIE 221 (246)
T ss_pred HHHHHHHHH-HHHHHhC--CCEEEEEecCHHHHHhhCcEEEEEECCEEEE
Confidence 987766644 4444543 78999999997754 6788877777777654
No 228
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.68 E-value=3.2e-16 Score=160.02 Aligned_cols=143 Identities=18% Similarity=0.164 Sum_probs=100.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhccccccCCcc---chh---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQIGCFVPCDSA---TIS--- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~g~~vpa~~~---~~~--- 593 (813)
..+.++++|++.+|++++|+||||||||||+|++++.... .+.-.++|.... ..+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 92 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLE 92 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHH
Confidence 4578899999999999999999999999999999754210 000112332110 011
Q ss_pred ------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q psy5289 594 ------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIAREL 660 (813)
Q Consensus 594 ------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l 660 (813)
.++.++..+++.+........+|+++++...+++. +.+|+++|||||++|+|+.....+.. ++..+
T Consensus 93 ~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 171 (201)
T cd03231 93 NLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAE-AMAGH 171 (201)
T ss_pred HHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHH
Confidence 12345566777666666677888888876665554 68999999999999999988777755 44445
Q ss_pred HhcCCCEEEEEcCCh-HHHhhcCC
Q psy5289 661 ASHRQPFTLFATHFH-EIALLSRV 683 (813)
Q Consensus 661 ~~~~~~~~l~~TH~~-el~~~~~~ 683 (813)
.+ .|+++|++||+. ++...+++
T Consensus 172 ~~-~g~tiii~sH~~~~~~~~~~~ 194 (201)
T cd03231 172 CA-RGGMVVLTTHQDLGLSEAGAR 194 (201)
T ss_pred Hh-CCCEEEEEecCchhhhhccce
Confidence 54 488999999985 45554444
No 229
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=4.7e-16 Score=164.51 Aligned_cols=153 Identities=17% Similarity=0.151 Sum_probs=104.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----hhcc-----------------------ccccCCcc-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----AQIG-----------------------CFVPCDSA- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----aq~g-----------------------~~vpa~~~- 590 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... ...| .++|.+..
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTP 96 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCcc
Confidence 4578899999999999999999999999999999876420 0111 12222211
Q ss_pred -chhHHH----------------------HHHHhcCCc----hhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q psy5289 591 -TISVVD----------------------QIFTRVGAA----DSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGR 642 (813)
Q Consensus 591 -~~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~ 642 (813)
..++.+ .++..+++. +.+.....++|+++++...+++ .+.+|+++|||||++
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~ 176 (251)
T PRK14251 97 FPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTS 176 (251)
T ss_pred CCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCc
Confidence 011111 123333442 2234455678887777666555 468999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~ 694 (813)
|+|+.....+.. +++.+.+ +.++|++||+.+. ..+++++..+.+|++..
T Consensus 177 ~LD~~~~~~l~~-~l~~~~~--~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 177 ALDPISSSEIEE-TLMELKH--QYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred cCCHHHHHHHHH-HHHHHHc--CCeEEEEECCHHHHHhhcCEEEEEECCEEEE
Confidence 999987766644 4555543 6899999999876 46788877777777654
No 230
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=4.5e-16 Score=165.44 Aligned_cols=167 Identities=15% Similarity=0.153 Sum_probs=111.5
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-h---hcc--------------
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-A---QIG-------------- 582 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-a---q~g-------------- 582 (813)
.+.+++...-+ +...+.++++|++.+|++++|+||||||||||+|++++.... . ..|
T Consensus 12 ~l~i~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 12 VYQINGMNLWY-----GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred eEEEeeEEEEE-----CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 46666654322 124688899999999999999999999999999999765320 0 011
Q ss_pred ---------ccccCCccc--hhHHH----------------------HHHHhcCCc----hhHhhccchhHHHHHHHHHH
Q psy5289 583 ---------CFVPCDSAT--ISVVD----------------------QIFTRVGAA----DSQYRGISTFMMEMKETATV 625 (813)
Q Consensus 583 ---------~~vpa~~~~--~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~i 625 (813)
.++|....- .++.+ .++..+++. +.+.....++|+++++...+
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~l 166 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCI 166 (259)
T ss_pred CHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHH
Confidence 122222110 01111 122334432 22344556788888776666
Q ss_pred HHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 626 IKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 626 l~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
++. +.+|+++|||||++|+|+.....+.. ++..+.+ +.++|++||+.+.. .+++++..+.+|++...
T Consensus 167 aral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 235 (259)
T PRK14274 167 ARALATNPDVLLMDEPTSALDPVSTRKIEE-LILKLKE--KYTIVIVTHNMQQAARVSDQTAFFYMGELVEC 235 (259)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 654 68999999999999999987776644 5555554 68999999998764 67888777888777544
No 231
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.68 E-value=2.1e-16 Score=161.08 Aligned_cols=135 Identities=18% Similarity=0.164 Sum_probs=96.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc---chhH-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA---TISV- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~---~~~~- 594 (813)
..+.++++|++.+|++++|+||||||||||+|++++.... .++ .++|.... ..++
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i-~~~~q~~~~~~~~tv~ 91 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNI-LYLGHLPGLKPELSAL 91 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhhe-EEeccCcccccCCcHH
Confidence 4578899999999999999999999999999999654210 111 23332211 0111
Q ss_pred ----------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q psy5289 595 ----------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIA 657 (813)
Q Consensus 595 ----------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~ 657 (813)
+..++..+++.+.......++|+++++...+++. +.+|+++|||||++|+|+.....+.. ++
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l 170 (198)
T TIGR01189 92 ENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAG-LL 170 (198)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH-HH
Confidence 2334566677666666778888887776666554 68999999999999999987666644 55
Q ss_pred HHHHhcCCCEEEEEcCChH
Q psy5289 658 RELASHRQPFTLFATHFHE 676 (813)
Q Consensus 658 ~~l~~~~~~~~l~~TH~~e 676 (813)
..+.+ .|.++|++||++.
T Consensus 171 ~~~~~-~~~tii~~sH~~~ 188 (198)
T TIGR01189 171 RAHLA-RGGIVLLTTHQDL 188 (198)
T ss_pred HHHHh-CCCEEEEEEcccc
Confidence 55555 4889999999863
No 232
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.6e-16 Score=166.16 Aligned_cols=152 Identities=14% Similarity=0.066 Sum_probs=102.3
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--------------------hccccccCCcc--chhHHHH
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--------------------QIGCFVPCDSA--TISVVDQ 597 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--------------------q~g~~vpa~~~--~~~~~d~ 597 (813)
.+.++++|++.+|++++|+||||||||||+|+++++.... +.-.++|.... ..++.+.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 95 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN 95 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence 5778999999999999999999999999999997553110 11123333211 0111111
Q ss_pred H---------------HHhcCC-----------chhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 598 I---------------FTRVGA-----------ADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 598 i---------------~~~~~~-----------~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
+ ....++ .........++|+++++...+++. +.+|+++|||||++|+|+....
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 175 (234)
T cd03251 96 IAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER 175 (234)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 1 111111 111223345777777776665554 6899999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~ 694 (813)
.+.. ++..+.+ +.++|++||+.+....++++..+.+|++..
T Consensus 176 ~l~~-~l~~~~~--~~tii~~sh~~~~~~~~d~v~~l~~G~i~~ 216 (234)
T cd03251 176 LVQA-ALERLMK--NRTTFVIAHRLSTIENADRIVVLEDGKIVE 216 (234)
T ss_pred HHHH-HHHHhcC--CCEEEEEecCHHHHhhCCEEEEecCCeEee
Confidence 7744 5555543 789999999988877788777777777653
No 233
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=4e-16 Score=164.91 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=103.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------h---------------------hccccccCCcc-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------A---------------------QIGCFVPCDSA- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------a---------------------q~g~~vpa~~~- 590 (813)
..+.++++|++.+|++++|+||||||||||||+|+++... + +.-.++|....
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 4578899999999999999999999999999999864310 0 01122332211
Q ss_pred -chhHHHH----------------------HHHhcCCch----hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q psy5289 591 -TISVVDQ----------------------IFTRVGAAD----SQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGR 642 (813)
Q Consensus 591 -~~~~~d~----------------------i~~~~~~~d----~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~ 642 (813)
..++.+. .+..++..+ ........+|+++++...+++. +.+|+++|||||++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~ 175 (250)
T PRK14262 96 FPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTS 175 (250)
T ss_pred CcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence 0111111 122233321 1334456778877776665554 68999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChH-HHhhcCCCCceEeeEEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHE-IALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~e-l~~~~~~~~~v~~~~~~~~ 695 (813)
|+|+.....+.. ++..+.+ +.++|++||+.+ +..+++++..+.+|++...
T Consensus 176 ~LD~~~~~~l~~-~l~~~~~--~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14262 176 ALDPIATQRIEK-LLEELSE--NYTIVIVTHNIGQAIRIADYIAFMYRGELIEY 226 (250)
T ss_pred ccCHHHHHHHHH-HHHHHhc--CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999988777644 4555554 689999999987 4567888777777776543
No 234
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=2.7e-16 Score=163.97 Aligned_cols=151 Identities=13% Similarity=0.098 Sum_probs=101.1
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCccch--hHHH-
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSATI--SVVD- 596 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~~~--~~~d- 596 (813)
.+.++++|++..|++++|+||||||||||||++++.... ...-.++|....-+ ++.+
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~ 96 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMEN 96 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHH
Confidence 578899999999999999999999999999999754311 01112333322100 1111
Q ss_pred --------------HHHHhcCCch-----------hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 597 --------------QIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 597 --------------~i~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
..+..+++.+ ........+|+++++...+++. +.+|+++|||||++|+|+....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~ 176 (229)
T cd03254 97 IRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK 176 (229)
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 1112222221 1222345777777776655554 6899999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
.+.. ++..+. .+.++|++||+.+....++++..+.+|.+.
T Consensus 177 ~l~~-~l~~~~--~~~tii~~sh~~~~~~~~d~i~~l~~g~~~ 216 (229)
T cd03254 177 LIQE-ALEKLM--KGRTSIIIAHRLSTIKNADKILVLDDGKII 216 (229)
T ss_pred HHHH-HHHHhc--CCCEEEEEecCHHHHhhCCEEEEEeCCeEE
Confidence 7644 445554 378999999998877777777667776654
No 235
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.8e-16 Score=165.90 Aligned_cols=147 Identities=18% Similarity=0.157 Sum_probs=100.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----hcc-----------------------ccccCCcc-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----QIG-----------------------CFVPCDSA- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----q~g-----------------------~~vpa~~~- 590 (813)
..+.++++|++.+|++++|+||||||||||||+++++.... ..| .++|....
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 35788999999999999999999999999999998754210 011 12222211
Q ss_pred --chhHHH----------------------HHHHhcCCc----hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q psy5289 591 --TISVVD----------------------QIFTRVGAA----DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELG 641 (813)
Q Consensus 591 --~~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~ 641 (813)
..++.+ .++..+++. +.......++|+++++...+++. +.+|+++|||||+
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 176 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPC 176 (258)
T ss_pred CCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 111111 123334432 23344557788888776666555 5899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceE
Q psy5289 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFR 688 (813)
Q Consensus 642 ~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~ 688 (813)
+|+|+.....+.. ++..+.+ ++++|++||+.+.. .+++++..+.
T Consensus 177 ~~LD~~~~~~l~~-~l~~~~~--~~tviivsH~~~~~~~~~d~i~~l~ 221 (258)
T PRK14241 177 SALDPISTLAIED-LINELKQ--DYTIVIVTHNMQQAARVSDQTAFFN 221 (258)
T ss_pred ccCCHHHHHHHHH-HHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEe
Confidence 9999988777644 5555554 58999999998664 6788765554
No 236
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.67 E-value=2.4e-16 Score=165.74 Aligned_cols=138 Identities=13% Similarity=0.071 Sum_probs=95.6
Q ss_pred ccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--------hccccccCCcc---chhH-----------------HHH
Q psy5289 546 YFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--------QIGCFVPCDSA---TISV-----------------VDQ 597 (813)
Q Consensus 546 ~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--------q~g~~vpa~~~---~~~~-----------------~d~ 597 (813)
.+++..|++++|+||||||||||+|+++++.... +.-.++|.... ..++ ...
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 98 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE 98 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHH
Confidence 3444578999999999999999999997653211 01123333211 1111 233
Q ss_pred HHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChH
Q psy5289 598 IFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHE 676 (813)
Q Consensus 598 i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~e 676 (813)
++..+++.+......+.+|+++++...+++ .+.+|+++|||||++|+|+.....+... +..+.++.+.++|++||+.+
T Consensus 99 ~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tiiivsHd~~ 177 (246)
T cd03237 99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKV-IRRFAENNEKTAFVVEHDII 177 (246)
T ss_pred HHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHH
Confidence 556677766666777889988877665555 4689999999999999999887777554 44454435899999999987
Q ss_pred HHh-hcCCC
Q psy5289 677 IAL-LSRVI 684 (813)
Q Consensus 677 l~~-~~~~~ 684 (813)
+.. +++++
T Consensus 178 ~~~~~~d~i 186 (246)
T cd03237 178 MIDYLADRL 186 (246)
T ss_pred HHHHhCCEE
Confidence 665 66654
No 237
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.67 E-value=2.4e-16 Score=183.38 Aligned_cols=154 Identities=13% Similarity=0.100 Sum_probs=110.5
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhh-------h--------------hhccccccCCc------cchh
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-------L--------------AQIGCFVPCDS------ATIS 593 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~-------l--------------aq~g~~vpa~~------~~~~ 593 (813)
+.++++|++.+|++++|+||||||||||||+++++.. + ...-.|+|... ...+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 4789999999999999999999999999999965421 0 00112444321 0001
Q ss_pred H------------------------HHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChh
Q psy5289 594 V------------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTF 647 (813)
Q Consensus 594 ~------------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~ 647 (813)
+ ++.++.++++. +......+.+|++|++...+++. +.+|+|+||||||+|+|+.
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 1 22345666665 45666678899888887776655 5899999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEE
Q psy5289 648 DGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 648 d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~ 696 (813)
....+.. ++..+.+ .|.++|++|||.+.. .+++++..+.+|++....
T Consensus 438 ~~~~l~~-~l~~l~~-~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~ 485 (510)
T PRK15439 438 ARNDIYQ-LIRSIAA-QNVAVLFISSDLEEIEQMADRVLVMHQGEISGAL 485 (510)
T ss_pred HHHHHHH-HHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 8777744 5566665 489999999997665 578887767777665443
No 238
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=5e-16 Score=168.74 Aligned_cols=177 Identities=14% Similarity=0.084 Sum_probs=115.0
Q ss_pred CCCCCcccCCCcceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----hhc--
Q psy5289 508 PYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----AQI-- 581 (813)
Q Consensus 508 ~~~rP~~~~~~~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----aq~-- 581 (813)
.|+-|++.. +..|.+.+....+ +...+.++++|++.+|++++|+|||||||||||++|+++... ..-
T Consensus 34 ~~~~~~~~~--~~~l~i~nl~~~~-----~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~ 106 (305)
T PRK14264 34 EWTDYEFDG--DAKLSVEDLDVYY-----GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGS 106 (305)
T ss_pred cccccccCC--CceEEEEEEEEEe-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE
Confidence 466777654 3457777765432 124689999999999999999999999999999999765310 001
Q ss_pred ---------------------cccccCCccc--hhHHHH----------------------------------HHHhcCC
Q psy5289 582 ---------------------GCFVPCDSAT--ISVVDQ----------------------------------IFTRVGA 604 (813)
Q Consensus 582 ---------------------g~~vpa~~~~--~~~~d~----------------------------------i~~~~~~ 604 (813)
..++|....- .++.+. ++..+++
T Consensus 107 I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 186 (305)
T PRK14264 107 VELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL 186 (305)
T ss_pred EEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC
Confidence 1233332210 011111 1222232
Q ss_pred c----hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-
Q psy5289 605 A----DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA- 678 (813)
Q Consensus 605 ~----d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~- 678 (813)
. +........+|+++++...+++. +.+|+++|||||++|+|+.....+.. ++..+.+ +.++|++||+.+..
T Consensus 187 ~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~-~L~~~~~--~~tiiivtH~~~~i~ 263 (305)
T PRK14264 187 WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIED-LIEELAE--EYTVVVVTHNMQQAA 263 (305)
T ss_pred chhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhc--CCEEEEEEcCHHHHH
Confidence 1 12234456788887776665554 68999999999999999987776644 5555655 47899999998765
Q ss_pred hhcCCC-CceEeeEEEE
Q psy5289 679 LLSRVI-PTFRNVQVSA 694 (813)
Q Consensus 679 ~~~~~~-~~v~~~~~~~ 694 (813)
.+++++ ..+.+|.+..
T Consensus 264 ~~~d~i~~~l~~G~i~~ 280 (305)
T PRK14264 264 RISDQTAVFLTGGELVE 280 (305)
T ss_pred HhcCEEEEEecCCEEEE
Confidence 577764 3346666543
No 239
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.67 E-value=2.2e-16 Score=183.25 Aligned_cols=169 Identities=18% Similarity=0.200 Sum_probs=116.6
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------- 578 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------- 578 (813)
..+++++....+ +...+.++++|++.+|++++|+||||||||||+|++++....
T Consensus 259 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~ 333 (490)
T PRK10938 259 PRIVLNNGVVSY-----NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWD 333 (490)
T ss_pred ceEEEeceEEEE-----CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHH
Confidence 346666553322 224588999999999999999999999999999999764321
Q ss_pred --hhccccccCCcc---c---------------------------hhHHHHHHHhcCCch-hHhhccchhHHHHHHHHHH
Q psy5289 579 --AQIGCFVPCDSA---T---------------------------ISVVDQIFTRVGAAD-SQYRGISTFMMEMKETATV 625 (813)
Q Consensus 579 --aq~g~~vpa~~~---~---------------------------~~~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~i 625 (813)
.++| ++|.... . -..+..++..+++.+ ......+++|+++++...+
T Consensus 334 ~~~~i~-~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 412 (490)
T PRK10938 334 IKKHIG-YVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALI 412 (490)
T ss_pred HHhhce-EECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHH
Confidence 0111 2221100 0 001234556677765 5566678899988887766
Q ss_pred HHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh--hcCCCCceEeeEEEEE
Q psy5289 626 IKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL--LSRVIPTFRNVQVSAL 695 (813)
Q Consensus 626 l~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~--~~~~~~~v~~~~~~~~ 695 (813)
++. +.+|+++||||||+|+|+.....+.. ++..+.++.++++|++||+.+... +++++..+.+|++...
T Consensus 413 a~al~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 413 VRALVKHPTLLILDEPLQGLDPLNRQLVRR-FVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHH-HHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 655 68999999999999999988777755 555565533457999999987764 4677777777776543
No 240
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.67 E-value=4.9e-16 Score=166.40 Aligned_cols=165 Identities=12% Similarity=0.049 Sum_probs=108.8
Q ss_pred cceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhcc--------ccccCCcc
Q psy5289 519 TGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG--------CFVPCDSA 590 (813)
Q Consensus 519 ~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g--------~~vpa~~~ 590 (813)
.+.|.+++.... ...+.++++|++.+|++++|+||||||||||+|+++++.... .| .|+|....
T Consensus 37 ~~~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~-~G~I~i~g~i~yv~q~~~ 108 (282)
T cd03291 37 DNNLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS-EGKIKHSGRISFSSQFSW 108 (282)
T ss_pred CCeEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEEEEeCccc
Confidence 356777777542 135788999999999999999999999999999997653211 11 23333221
Q ss_pred --chhHHHH--------------HHHhcCCchhHh-----------hccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q psy5289 591 --TISVVDQ--------------IFTRVGAADSQY-----------RGISTFMMEMKETATVIK-KCTENSLVIIDELGR 642 (813)
Q Consensus 591 --~~~~~d~--------------i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~ 642 (813)
..++.+. .+...++.+.+. ...+.+|+++++...+++ .+.+|+++|+|||++
T Consensus 109 l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~ 188 (282)
T cd03291 109 IMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188 (282)
T ss_pred ccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 0011111 222223322111 123567777777655554 468999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
|+|+.....+...++..+.+ +.++|++||+.+....++++..+.+|++.
T Consensus 189 gLD~~~~~~l~~~ll~~~~~--~~tIiiisH~~~~~~~~d~i~~l~~G~i~ 237 (282)
T cd03291 189 YLDVFTEKEIFESCVCKLMA--NKTRILVTSKMEHLKKADKILILHEGSSY 237 (282)
T ss_pred cCCHHHHHHHHHHHHHHhhC--CCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 99998766665555555543 68999999998877777766556665543
No 241
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.8e-16 Score=151.69 Aligned_cols=137 Identities=19% Similarity=0.167 Sum_probs=99.8
Q ss_pred CceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh-----cccc---c--------------cCCccchhH
Q psy5289 537 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-----IGCF---V--------------PCDSATISV 594 (813)
Q Consensus 537 ~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-----~g~~---v--------------pa~~~~~~~ 594 (813)
+...+..+++|....|+++.|+||||+|||||||+++++.-... -|.. + |+-+.+++.
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 44678889999999999999999999999999999976532110 0000 0 111111221
Q ss_pred H------------------HHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHH
Q psy5289 595 V------------------DQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACS 655 (813)
Q Consensus 595 ~------------------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~ 655 (813)
+ ...++.+|+.+-......++|.+++++..+.+. ++.++|+|||||++++|......+..-
T Consensus 93 ~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l 172 (209)
T COG4133 93 LENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTAL 172 (209)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHH
Confidence 1 234566777777777788999999998888886 589999999999999998765555555
Q ss_pred HHHHHHhcCCCEEEEEcCCh
Q psy5289 656 IARELASHRQPFTLFATHFH 675 (813)
Q Consensus 656 i~~~l~~~~~~~~l~~TH~~ 675 (813)
+.+|..+ |..||++||..
T Consensus 173 ~~~H~~~--GGiVllttHq~ 190 (209)
T COG4133 173 MAAHAAQ--GGIVLLTTHQP 190 (209)
T ss_pred HHHHhcC--CCEEEEecCCc
Confidence 6666654 88899999974
No 242
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.67 E-value=1e-16 Score=154.68 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=84.9
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHH
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEM 619 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~ 619 (813)
.+.++++|+..+|++++|+||||||||||++++++.... ...++.+-.. ..++. ...+|.++
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---------~~G~i~~~~~--~~i~~-------~~~lS~G~ 75 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP---------DEGIVTWGST--VKIGY-------FEQLSGGE 75 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC---------CceEEEECCe--EEEEE-------EccCCHHH
Confidence 467789999999999999999999999999998665322 1111111000 01110 01166666
Q ss_pred HHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEe
Q psy5289 620 KETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRN 689 (813)
Q Consensus 620 ~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~ 689 (813)
++...+++ .+.+|+++|+|||++|+|+.....+.. +++ + .++++|++||+.+.. .+++++..+.+
T Consensus 76 ~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~-~l~---~-~~~til~~th~~~~~~~~~d~v~~l~~ 142 (144)
T cd03221 76 KMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE-ALK---E-YPGTVILVSHDRYFLDQVATKIIELED 142 (144)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHH---H-cCCEEEEEECCHHHHHHhCCEEEEEeC
Confidence 66554444 468999999999999999977665533 333 2 257999999997766 46676544444
No 243
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.9e-16 Score=171.84 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=114.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------hhccccccCCcc----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------AQIGCFVPCDSA---- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------aq~g~~vpa~~~---- 590 (813)
..+.++++|++..|++++|+||||||||||+|+|+++... .++ .++|.+..
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i-~~v~Q~~~~~l~ 106 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKI-QIVFQNPYGSLN 106 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCE-EEEEcCchhhcC
Confidence 3578999999999999999999999999999999654210 011 23333210
Q ss_pred ---ch--------------------hHHHHHHHhcCCch-hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q psy5289 591 ---TI--------------------SVVDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTS 645 (813)
Q Consensus 591 ---~~--------------------~~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd 645 (813)
.+ ..+..++.++|+.+ ........+|++|+|...|++. +.+|++||+||||+|+|
T Consensus 107 p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD 186 (327)
T PRK11308 107 PRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186 (327)
T ss_pred CccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCC
Confidence 00 01234566677653 4566678899999887776665 68999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEEE
Q psy5289 646 TFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 646 ~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~~ 697 (813)
......+.. ++..+.++.|.++|++|||++++. +++++..+.+|++.....
T Consensus 187 ~~~~~~i~~-lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~ 238 (327)
T PRK11308 187 VSVQAQVLN-LMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT 238 (327)
T ss_pred HHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 988777755 444555435899999999988775 788888888888765443
No 244
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.5e-16 Score=183.27 Aligned_cols=172 Identities=13% Similarity=0.054 Sum_probs=118.4
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--h-------------------
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--A------------------- 579 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--a------------------- 579 (813)
.+.+++....+ . ..+...+.++++|++.+|++++|+||||||||||+|+++++... +
T Consensus 259 ~l~~~~l~~~~-~-~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 259 ILEVRNLTAWD-P-VNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred eEEEecCcccc-c-cccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 46666654332 0 00123578999999999999999999999999999999765310 0
Q ss_pred -hccccccCCc------cchh--------------------------HHHHHHHhcCCc-hhHhhccchhHHHHHHHHHH
Q psy5289 580 -QIGCFVPCDS------ATIS--------------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATV 625 (813)
Q Consensus 580 -q~g~~vpa~~------~~~~--------------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~i 625 (813)
+.-.++|... ..++ .++.++.++++. +.......++|+++++...+
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence 0012333321 0011 123345566664 34566678899988887777
Q ss_pred HHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEE
Q psy5289 626 IKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 626 l~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~ 696 (813)
++. +.+|+++||||||+|+|+.....+ +.++..+.+ .|.++|++|||.+.. .+++++..+.+|++....
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~l~~-~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEI-YKLINQLVQ-QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHH-HHHHHHHHH-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 665 689999999999999999877776 456666776 589999999997655 678887777777765433
No 245
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=1.9e-16 Score=155.24 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=90.7
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhcc-ccccCCccchhHHHHHHHhcCCchhHhhccchhHHH
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG-CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMME 618 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g-~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e 618 (813)
.+.++++|++.+|++++|+||||||||||+++++++.... .| .++......-.........++.. ..++++
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~~~~~~~~~~~~~~~~~~i~~~-------~qlS~G 84 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILIDGKDIAKLPLEELRRRIGYV-------PQLSGG 84 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEEcccCCHHHHHhceEEE-------eeCCHH
Confidence 4677899999999999999999999999999997654321 12 11111100000001111112211 116666
Q ss_pred HHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhh-cCCCCceEe
Q psy5289 619 MKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALL-SRVIPTFRN 689 (813)
Q Consensus 619 ~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~-~~~~~~v~~ 689 (813)
+++...+.+ .+.+|+++|+|||++|+|+.....+.. ++..+.+ .+++++++||+++.... ++++..+.+
T Consensus 85 ~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~-~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~ 155 (157)
T cd00267 85 QRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLE-LLRELAE-EGRTVIIVTHDPELAELAADRVIVLKD 155 (157)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 666555444 468999999999999999988777655 4445555 37899999999877664 466544443
No 246
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.67 E-value=2.1e-16 Score=164.41 Aligned_cols=148 Identities=14% Similarity=0.079 Sum_probs=100.9
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--------------------hccccccCCccc--hhHH--
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--------------------QIGCFVPCDSAT--ISVV-- 595 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--------------------q~g~~vpa~~~~--~~~~-- 595 (813)
.+.++++|++.+|++++|+||||||||||+++++++.... +.-.++|....- .++.
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~n 107 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDN 107 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHH
Confidence 5889999999999999999999999999999997552110 001122222110 0111
Q ss_pred ----------------------HHHHHhc--CCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHH
Q psy5289 596 ----------------------DQIFTRV--GAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 596 ----------------------d~i~~~~--~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
..++..+ |..+.+......+|+++++...+++. +.+|+++|||||++|+|+....
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 187 (226)
T cd03248 108 IAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187 (226)
T ss_pred hccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 1122233 44444555567788887776665554 6899999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEee
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNV 690 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~ 690 (813)
.+.. ++..+.+ +.++|++||+++....++++..+.+|
T Consensus 188 ~l~~-~l~~~~~--~~tii~~sh~~~~~~~~d~i~~l~~g 224 (226)
T cd03248 188 QVQQ-ALYDWPE--RRTVLVIAHRLSTVERADQILVLDGG 224 (226)
T ss_pred HHHH-HHHHHcC--CCEEEEEECCHHHHHhCCEEEEecCC
Confidence 7755 4444544 58999999998887777766555544
No 247
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=4.7e-16 Score=164.71 Aligned_cols=153 Identities=15% Similarity=0.119 Sum_probs=104.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----hcc-----------------------ccccCCcc-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----QIG-----------------------CFVPCDSA- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----q~g-----------------------~~vpa~~~- 590 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.... ..| .++|....
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 45888999999999999999999999999999997663210 011 12232211
Q ss_pred --chhHHH-----------------------HHHHhcCCc----hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q psy5289 591 --TISVVD-----------------------QIFTRVGAA----DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDEL 640 (813)
Q Consensus 591 --~~~~~d-----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp 640 (813)
..++.+ .++..+++. +........+|+++++...+++. +.+|+++|||||
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 176 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 111111 122233331 12334456778777776666654 689999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEE
Q psy5289 641 GRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 641 ~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~ 694 (813)
++|+|+.....+.. ++..+.+ ++++|++||+.+. ..+++++..+.+|++..
T Consensus 177 ~~~LD~~~~~~l~~-~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 228 (253)
T PRK14267 177 TANIDPVGTAKIEE-LLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYLGKLIE 228 (253)
T ss_pred CccCCHHHHHHHHH-HHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence 99999987766644 4555554 5899999999876 45788877777777653
No 248
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.67 E-value=6.7e-16 Score=169.15 Aligned_cols=176 Identities=13% Similarity=0.046 Sum_probs=119.6
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--------------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------------------- 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-------------------- 579 (813)
..+++++....+-. ..+...+.++++|++..|++++|+|+||||||||+|+|+++....
T Consensus 11 ~~L~i~~l~~~~~~-~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFST-PDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEec-CCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 34566655433211 111235788999999999999999999999999999997553210
Q ss_pred -------hccccccCCcc-----chhH----------------------HHHHHHhcCCch---hHhhccchhHHHHHHH
Q psy5289 580 -------QIGCFVPCDSA-----TISV----------------------VDQIFTRVGAAD---SQYRGISTFMMEMKET 622 (813)
Q Consensus 580 -------q~g~~vpa~~~-----~~~~----------------------~d~i~~~~~~~d---~~~~~~s~f~~e~~~~ 622 (813)
..-.++|.+.. .+.+ ...++..+|+.+ .+......+|++|+|.
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 00123333321 0111 122445556543 2344567889999887
Q ss_pred HHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 623 ATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 623 ~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
..|++. +.+|+|+|+|||++|+|......+.. ++..+.++.|.++||+|||.+++ .+++++..+.+|++....+
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMT-LLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 776665 68999999999999999988777755 55556554589999999998876 4889888888888765443
No 249
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.67 E-value=3.6e-16 Score=182.65 Aligned_cols=155 Identities=13% Similarity=0.032 Sum_probs=112.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh---hhh-h----------------------------------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV---FLA-Q---------------------------------- 580 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~---~la-q---------------------------------- 580 (813)
..+.++++|++.+|++++|+||||||||||||+++++. .-. +
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 92 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE 92 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence 35788999999999999999999999999999997763 100 0
Q ss_pred -----------------ccccccCC-cc---chhH---------------------HHHHHHhcCCchhHhhccchhHHH
Q psy5289 581 -----------------IGCFVPCD-SA---TISV---------------------VDQIFTRVGAADSQYRGISTFMME 618 (813)
Q Consensus 581 -----------------~g~~vpa~-~~---~~~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e 618 (813)
.-.++|.. .. ...+ +..++..+|+.+......+++|++
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG 172 (520)
T TIGR03269 93 EVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGG 172 (520)
T ss_pred chhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHH
Confidence 00122221 00 0111 123455666666666677899999
Q ss_pred HHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 619 MKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 619 ~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
++++..+++. +.+|+++|||||++|+|+.....+.. +++.+.++.|.++|++||+.+.. .+++++..+.+|++..
T Consensus 173 q~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~ 249 (520)
T TIGR03269 173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHN-ALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKE 249 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEee
Confidence 8887776665 68999999999999999988777755 55555443589999999998765 5788888788877653
No 250
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=5e-16 Score=164.27 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=105.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--h--hhcc-----------------------ccccCCccc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--L--AQIG-----------------------CFVPCDSAT 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--l--aq~g-----------------------~~vpa~~~~ 591 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.. . ...| .++|....-
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 457889999999999999999999999999999976532 0 0011 233332110
Q ss_pred h--hHH-----------------------HHHHHhcCCch----hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q psy5289 592 I--SVV-----------------------DQIFTRVGAAD----SQYRGISTFMMEMKETATVIKK-CTENSLVIIDELG 641 (813)
Q Consensus 592 ~--~~~-----------------------d~i~~~~~~~d----~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~ 641 (813)
+ ++. ..++..+++.+ .+......+|+++++...+++. +.+|+++|||||+
T Consensus 98 ~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 177 (251)
T PRK14244 98 FPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPC 177 (251)
T ss_pred ccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0 111 12334445432 2334456778777776665554 6899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 642 ~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
+|+|+.....+.. ++..+.+ +.++|++||+.+.. .+++++..+.+|++..
T Consensus 178 ~~LD~~~~~~l~~-~l~~~~~--~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 228 (251)
T PRK14244 178 SALDPVATNVIEN-LIQELKK--NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228 (251)
T ss_pred ccCCHHHHHHHHH-HHHHHhc--CCeEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 9999987766644 5555543 78999999998765 5788887788877654
No 251
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=5.7e-16 Score=163.98 Aligned_cols=153 Identities=15% Similarity=0.106 Sum_probs=103.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh-hh---hcc-----------------------ccccCCcc-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-LA---QIG-----------------------CFVPCDSA- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~-la---q~g-----------------------~~vpa~~~- 590 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.. .. ..| .++|....
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 457889999999999999999999999999999976421 00 011 23333211
Q ss_pred -chhHHHHH----------------------HHhcCCc----hhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q psy5289 591 -TISVVDQI----------------------FTRVGAA----DSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGR 642 (813)
Q Consensus 591 -~~~~~d~i----------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~ 642 (813)
..++.+.+ +.+++.. +........+|+++++...+++ .+.+|+++|||||++
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 177 (252)
T PRK14239 98 FPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTS 177 (252)
T ss_pred CcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 01222221 1222221 1223445678888777666655 468999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~ 694 (813)
|+|+.....+.. ++..+.+ +.++|++||+.+. ..+++++..+.+|.+..
T Consensus 178 ~LD~~~~~~l~~-~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 178 ALDPISAGKIEE-TLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227 (252)
T ss_pred ccCHHHHHHHHH-HHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999988777754 5555554 5899999999865 56788887777777654
No 252
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.66 E-value=2.9e-16 Score=156.12 Aligned_cols=126 Identities=15% Similarity=0.042 Sum_probs=83.3
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHH
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMK 620 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~ 620 (813)
+.++. +++++|++++|+||||||||||+|+++++.... .|...- ....+++.. +.. .+|++++
T Consensus 15 ~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~-~g~~i~~~~---------q~~-----~LSgGq~ 77 (177)
T cd03222 15 LLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEW-DGITPVYKP---------QYI-----DLSGGEL 77 (177)
T ss_pred EEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEE-CCEEEEEEc---------ccC-----CCCHHHH
Confidence 34453 677889999999999999999999987654221 121100 000111100 000 1677777
Q ss_pred HHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCC
Q psy5289 621 ETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVI 684 (813)
Q Consensus 621 ~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~ 684 (813)
+...+++ .+.+|+++|+|||++|+|+.....+...+. .+.++.+.++|++||+++... +++++
T Consensus 78 qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~-~~~~~~~~tiiivsH~~~~~~~~~d~i 142 (177)
T cd03222 78 QRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIR-RLSEEGKKTALVVEHDLAVLDYLSDRI 142 (177)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH-HHHHcCCCEEEEEECCHHHHHHhCCEE
Confidence 6655554 468999999999999999988777755444 444423489999999987665 66654
No 253
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.66 E-value=3.5e-16 Score=162.43 Aligned_cols=143 Identities=23% Similarity=0.189 Sum_probs=97.9
Q ss_pred ccCCceeEEEEccCCCChhHHHhhhhhhhhhh---------------hccccccCCcc-----chhH-------------
Q psy5289 548 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA---------------QIGCFVPCDSA-----TISV------------- 594 (813)
Q Consensus 548 ~~~~g~~~~itGpNgsGKSTllr~i~~~~~la---------------q~g~~vpa~~~-----~~~~------------- 594 (813)
++.+|++++|+||||||||||+|+++++.... +.-.++|.... ..++
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 81 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG 81 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence 45679999999999999999999997542110 01123332210 0111
Q ss_pred ------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHH
Q psy5289 595 ------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELA 661 (813)
Q Consensus 595 ------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~ 661 (813)
+..++..+++.+........+|+++++...+++. +.+|+++|+|||++|+|+.....+... +..+.
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~-l~~~~ 160 (223)
T TIGR03771 82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL-FIELA 160 (223)
T ss_pred cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHH
Confidence 2234555666655566667888888877666554 689999999999999999888777554 45555
Q ss_pred hcCCCEEEEEcCChHH-HhhcCCCCceEeeEEE
Q psy5289 662 SHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVS 693 (813)
Q Consensus 662 ~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~ 693 (813)
+ .|.++|++||+.+. ..+++++..+ +|++.
T Consensus 161 ~-~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~ 191 (223)
T TIGR03771 161 G-AGTAILMTTHDLAQAMATCDRVVLL-NGRVI 191 (223)
T ss_pred H-cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE
Confidence 5 48899999999874 4577765544 55554
No 254
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.6e-16 Score=154.93 Aligned_cols=153 Identities=20% Similarity=0.225 Sum_probs=108.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh----------------------hhhhccccc----cCCccch
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV----------------------FLAQIGCFV----PCDSATI 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~----------------------~laq~g~~v----pa~~~~~ 592 (813)
..|.++++++++.|++.+|.||||||||||.++|++.. =-|..|.|+ |++-.-+
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 47999999999999999999999999999999996431 024455543 3222111
Q ss_pred h------------------------HHHHHHHhcCCch-hHhhcc-chhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q psy5289 593 S------------------------VVDQIFTRVGAAD-SQYRGI-STFMMEMKETATVIKK-CTENSLVIIDELGRGTS 645 (813)
Q Consensus 593 ~------------------------~~d~i~~~~~~~d-~~~~~~-s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd 645 (813)
. .++.....++..+ .+.+.. -.||++-+....++.. +.+|+++|||||-+|+|
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 1 1222344555544 233333 3578877777777776 47999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhc--CCCCceEeeEEE
Q psy5289 646 TFDGFGMACSIARELASHRQPFTLFATHFHEIALLS--RVIPTFRNVQVS 693 (813)
Q Consensus 646 ~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~--~~~~~v~~~~~~ 693 (813)
. |+..+....++.+.+ .+..+|++||+.++.... |.+..+.+|++.
T Consensus 177 I-dalk~V~~~i~~lr~-~~~~~liITHy~rll~~i~pD~vhvl~~GrIv 224 (251)
T COG0396 177 I-DALKIVAEGINALRE-EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIV 224 (251)
T ss_pred H-HHHHHHHHHHHHHhc-CCCeEEEEecHHHHHhhcCCCEEEEEECCEEE
Confidence 7 666666667788887 699999999999998876 443334455444
No 255
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=3.8e-16 Score=163.64 Aligned_cols=152 Identities=14% Similarity=0.106 Sum_probs=100.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--------------------hccccccCCcc--chhHHH
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--------------------QIGCFVPCDSA--TISVVD 596 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--------------------q~g~~vpa~~~--~~~~~d 596 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.... +.-.|+|.... ..++.+
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 93 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGY 93 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHH
Confidence 34778999999999999999999999999999997653211 00123332211 011111
Q ss_pred H---------------HHHhcCCchh-----------HhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q psy5289 597 Q---------------IFTRVGAADS-----------QYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 597 ~---------------i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~ 649 (813)
. .....++.+. +......+|+++++...+++ .+.+|+++|||||++|+|+...
T Consensus 94 nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~ 173 (236)
T cd03253 94 NIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTE 173 (236)
T ss_pred HHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1 1112222221 12223467777777655555 4689999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
..+.. ++..+.+ |.++|++||+.+....++++..+.+|++.
T Consensus 174 ~~l~~-~l~~~~~--~~tiii~sh~~~~~~~~d~~~~l~~g~i~ 214 (236)
T cd03253 174 REIQA-ALRDVSK--GRTTIVIAHRLSTIVNADKIIVLKDGRIV 214 (236)
T ss_pred HHHHH-HHHHhcC--CCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 76644 4445543 78999999998887777777666666654
No 256
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.66 E-value=5.3e-16 Score=161.23 Aligned_cols=143 Identities=13% Similarity=0.149 Sum_probs=99.7
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------h---------------------hccccccCCccc
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------A---------------------QIGCFVPCDSAT 591 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------a---------------------q~g~~vpa~~~~ 591 (813)
.+.++++|++.+|++++|+||||||||||+|+++++... . +...++|.....
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 101 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV 101 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence 578899999999999999999999999999999654210 0 011233333210
Q ss_pred ---hhH---------------------HHHHHHhcCCchhH-hhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q psy5289 592 ---ISV---------------------VDQIFTRVGAADSQ-YRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTS 645 (813)
Q Consensus 592 ---~~~---------------------~d~i~~~~~~~d~~-~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd 645 (813)
.++ ...++..+|+.+.. ......+|+++++...+++. +.+|+++|||||++|+|
T Consensus 102 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 181 (224)
T TIGR02324 102 IPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD 181 (224)
T ss_pred CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 000 11234455655432 44566788887776666554 68999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCC
Q psy5289 646 TFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVI 684 (813)
Q Consensus 646 ~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~ 684 (813)
+.....+.. ++..+.+ .|+++|++||+.++.. +++++
T Consensus 182 ~~~~~~l~~-~l~~~~~-~g~tii~vsH~~~~~~~~~d~i 219 (224)
T TIGR02324 182 AANRQVVVE-LIAEAKA-RGAALIGIFHDEEVRELVADRV 219 (224)
T ss_pred HHHHHHHHH-HHHHHHh-cCCEEEEEeCCHHHHHHhccee
Confidence 988777755 4555555 4899999999988774 67754
No 257
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.66 E-value=5.2e-16 Score=180.44 Aligned_cols=151 Identities=15% Similarity=0.132 Sum_probs=108.9
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------------------hhccccccCCc------cch
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------------------AQIGCFVPCDS------ATI 592 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----------------------aq~g~~vpa~~------~~~ 592 (813)
+.++++|++.+|++++|+||||||||||||+++++... .++ .|+|... ...
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i-~~v~q~~~~~~~~~~~ 345 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI-VYISEDRKRDGLVLGM 345 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC-EEecCccccCCCcCCC
Confidence 57899999999999999999999999999999654210 012 2334331 001
Q ss_pred hH---------------------------HHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q psy5289 593 SV---------------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRG 643 (813)
Q Consensus 593 ~~---------------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~G 643 (813)
++ ++.++.++++. +.......++|+++++...+++. +.+|+++||||||+|
T Consensus 346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~ 425 (501)
T PRK10762 346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG 425 (501)
T ss_pred cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 11 22355566663 44556677889888887776665 589999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 644 TSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 644 td~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
+|+.....+.. ++..+.+ .|.++|++||+.+.. .+++++..+.+|++..
T Consensus 426 LD~~~~~~l~~-~l~~~~~-~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 426 VDVGAKKEIYQ-LINQFKA-EGLSIILVSSEMPEVLGMSDRILVMHEGRISG 475 (501)
T ss_pred CCHhHHHHHHH-HHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99988777744 5555665 489999999997665 5788777777776644
No 258
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=7.4e-16 Score=162.88 Aligned_cols=154 Identities=15% Similarity=0.176 Sum_probs=104.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------h---------------------hccccccCCcc-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------A---------------------QIGCFVPCDSA- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------a---------------------q~g~~vpa~~~- 590 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... + +.-.++|....
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14240 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNP 95 (250)
T ss_pred ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCcc
Confidence 3578899999999999999999999999999999764210 0 00123333211
Q ss_pred -chhHHHHH----------------------HHhcCCc----hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q psy5289 591 -TISVVDQI----------------------FTRVGAA----DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGR 642 (813)
Q Consensus 591 -~~~~~d~i----------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~ 642 (813)
..++.+.+ +..++.. +.......++|+++++...+++. +.+|+++|||||++
T Consensus 96 ~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 175 (250)
T PRK14240 96 FPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTS 175 (250)
T ss_pred CcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 11222221 1222221 12234456788888776666555 68999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~~ 695 (813)
|+|+.....+.. ++..+.+ +.++|++||+.+. ..+++++..+.+|++...
T Consensus 176 ~LD~~~~~~l~~-~l~~~~~--~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 226 (250)
T PRK14240 176 ALDPISTLKIEE-LIQELKK--DYTIVIVTHNMQQASRISDKTAFFLNGEIVEF 226 (250)
T ss_pred cCCHHHHHHHHH-HHHHHhc--CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe
Confidence 999988777754 4455543 6899999999875 567888777777776543
No 259
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=5.9e-16 Score=158.19 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=99.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--hhcc--------------------ccccCCcc---chh
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--AQIG--------------------CFVPCDSA---TIS 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--aq~g--------------------~~vpa~~~---~~~ 593 (813)
..+.++++|++.+|++++|+||||||||||+++++++... ...| .++|.... ..+
T Consensus 20 ~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 99 (202)
T cd03233 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLT 99 (202)
T ss_pred ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCc
Confidence 4578899999999999999999999999999999876431 1111 12222111 122
Q ss_pred HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEE-
Q psy5289 594 VVDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFA- 671 (813)
Q Consensus 594 ~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~- 671 (813)
+.+.+...... ........+++++++...+.+ .+.+|+++|||||++|+|+.....+.. +++.+.++.+.+++++
T Consensus 100 v~~~l~~~~~~--~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~~t~ii~~ 176 (202)
T cd03233 100 VRETLDFALRC--KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK-CIRTMADVLKTTTFVSL 176 (202)
T ss_pred HHHHHhhhhhh--ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHH-HHHHHHHhCCCEEEEEE
Confidence 22322111000 023345677777776655444 568999999999999999987776644 5555554335666665
Q ss_pred cCCh-HHHhhcCCCCceEeeEEE
Q psy5289 672 THFH-EIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 672 TH~~-el~~~~~~~~~v~~~~~~ 693 (813)
+|+. ++..+++++..+.+|++.
T Consensus 177 ~h~~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 177 YQASDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred cCCHHHHHHhCCeEEEEECCEEE
Confidence 5553 566788888888888765
No 260
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.4e-16 Score=180.65 Aligned_cols=156 Identities=21% Similarity=0.172 Sum_probs=113.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------------------hhccccccCCcc---chh
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------------------AQIGCFVPCDSA---TIS 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----------------------aq~g~~vpa~~~---~~~ 593 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .++ .++|.... ..+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i-~~v~q~~~~~~~~t 89 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGI-SMVHQELNLVLQRS 89 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCE-EEEecccccccCCC
Confidence 3577899999999999999999999999999999654210 011 23333211 011
Q ss_pred H------------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q psy5289 594 V------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 594 ~------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d 648 (813)
+ +..++.+++..+......+++|+++++...+++. +.+|+++|||||++|+|+..
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~ 169 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE 169 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 1 2234555666555566678899888887776664 68999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
...+.. ++..+.+ .|.++|++||+.+.. .+++++..+.+|++....+
T Consensus 170 ~~~l~~-~l~~l~~-~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 217 (491)
T PRK10982 170 VNHLFT-IIRKLKE-RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQP 217 (491)
T ss_pred HHHHHH-HHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecC
Confidence 777744 5556665 589999999997765 5788888888888765443
No 261
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.2e-15 Score=176.93 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=106.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------h---hccccccCCc-----cchh----------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------A---QIGCFVPCDS-----ATIS---------- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------a---q~g~~vpa~~-----~~~~---------- 593 (813)
..+.++++|++.+|++++|+||||||||||||++++.... . .+| |+|... ....
T Consensus 325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig-y~~Q~~~~~l~~~~~~~~~~~~~~~ 403 (638)
T PRK10636 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLG-YFAQHQLEFLRADESPLQHLARLAP 403 (638)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEE-EecCcchhhCCccchHHHHHHHhCc
Confidence 5688999999999999999999999999999999754311 0 122 233221 0001
Q ss_pred -----HHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCC
Q psy5289 594 -----VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQP 666 (813)
Q Consensus 594 -----~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~ 666 (813)
.+..++.+++.. +......+++|+++++...+++. +.+|.++||||||+|+|+.....+...+. + .+.
T Consensus 404 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~----~-~~g 478 (638)
T PRK10636 404 QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALI----D-FEG 478 (638)
T ss_pred hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHH----H-cCC
Confidence 123456667774 45677788999988887666655 58999999999999999987666544333 2 234
Q ss_pred EEEEEcCChHHH-hhcCCCCceEeeEEE
Q psy5289 667 FTLFATHFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 667 ~~l~~TH~~el~-~~~~~~~~v~~~~~~ 693 (813)
++|++|||.++. .+++++..+.+|++.
T Consensus 479 tvi~vSHd~~~~~~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 479 ALVVVSHDRHLLRSTTDDLYLVHDGKVE 506 (638)
T ss_pred eEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 899999998766 478877667666654
No 262
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=1e-15 Score=163.98 Aligned_cols=161 Identities=16% Similarity=0.110 Sum_probs=105.1
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-h---hcc-------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-A---QIG------------- 582 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-a---q~g------------- 582 (813)
..|.+++....+ +...+.++++|++.+|++++|+||||||||||+++++++... . ..|
T Consensus 19 ~~l~~~nl~~~~-----~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 19 SVFEVEGVKVFY-----GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred ceEEEeeEEEEe-----CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 346665554322 124688999999999999999999999999999999765310 0 011
Q ss_pred ----------ccccCCccc--hhHHHH--------------------HHHhcCCc----hhHhhccchhHHHHHHHHHHH
Q psy5289 583 ----------CFVPCDSAT--ISVVDQ--------------------IFTRVGAA----DSQYRGISTFMMEMKETATVI 626 (813)
Q Consensus 583 ----------~~vpa~~~~--~~~~d~--------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il 626 (813)
.++|....- .++.+. .+..++.. +......+.+|+++++...++
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred chhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 133333210 012221 12222321 223344567887777765555
Q ss_pred H-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceE
Q psy5289 627 K-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFR 688 (813)
Q Consensus 627 ~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~ 688 (813)
+ .+.+|+++|||||++|+|+.....+.. ++..+.+ ++++|++||+.+.. .+++++..+.
T Consensus 174 raL~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 174 RAIAMKPDVLLMDEPCSALDPISTRQVEE-LCLELKE--QYTIIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 5 468999999999999999988777755 4444554 68999999997655 5788766665
No 263
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=7.1e-16 Score=163.53 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=104.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--------------------------hccccccCCcc--
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--------------------------QIGCFVPCDSA-- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--------------------------q~g~~vpa~~~-- 590 (813)
..+.++++|++.+|++++|+||||||||||+++|++..... +.-.++|....
T Consensus 23 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 102 (257)
T PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPF 102 (257)
T ss_pred ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccC
Confidence 46789999999999999999999999999999997542110 00122332211
Q ss_pred -chhHHH----------------------HHHHhcCCc----hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q psy5289 591 -TISVVD----------------------QIFTRVGAA----DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGR 642 (813)
Q Consensus 591 -~~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~ 642 (813)
..++.+ .++..+++. +........+++++++...+++. +.+|+++|||||++
T Consensus 103 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~ 182 (257)
T PRK14246 103 PHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTS 182 (257)
T ss_pred CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 111111 223334442 22334456788887776666554 68999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
|+|+.....+.. ++..+.+ ++++|++||+.+.. .+++++..+.+|++..
T Consensus 183 ~LD~~~~~~l~~-~l~~~~~--~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~ 232 (257)
T PRK14246 183 MIDIVNSQAIEK-LITELKN--EIAIVIVSHNPQQVARVADYVAFLYNGELVE 232 (257)
T ss_pred cCCHHHHHHHHH-HHHHHhc--CcEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999987776644 5555554 68999999998776 6788777777776644
No 264
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.66 E-value=5.7e-16 Score=157.45 Aligned_cols=140 Identities=12% Similarity=0.117 Sum_probs=97.2
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----------------hccccccCCcc---chhH------
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----------------QIGCFVPCDSA---TISV------ 594 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----------------q~g~~vpa~~~---~~~~------ 594 (813)
.+.+ ++|++.+|++++|+||||||||||+|+++++.... +.-.++|.... ..++
T Consensus 15 ~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~ 93 (195)
T PRK13541 15 NLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKF 93 (195)
T ss_pred EEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHH
Confidence 3455 99999999999999999999999999997652100 00112332110 1111
Q ss_pred ----------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q psy5289 595 ----------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASH 663 (813)
Q Consensus 595 ----------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~ 663 (813)
...++..++..+......+.+|+++++...+++. +.+|+++|+|||++|+|+.....+.. ++....+
T Consensus 94 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~-~l~~~~~- 171 (195)
T PRK13541 94 WSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNN-LIVMKAN- 171 (195)
T ss_pred HHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHh-
Confidence 2234455666666666778888888776666554 68999999999999999987666544 5544444
Q ss_pred CCCEEEEEcCChHHHhhcC
Q psy5289 664 RQPFTLFATHFHEIALLSR 682 (813)
Q Consensus 664 ~~~~~l~~TH~~el~~~~~ 682 (813)
.+.++|++||+.+....++
T Consensus 172 ~~~tiii~sh~~~~i~~~~ 190 (195)
T PRK13541 172 SGGIVLLSSHLESSIKSAQ 190 (195)
T ss_pred CCCEEEEEeCCccccchhh
Confidence 5899999999987666554
No 265
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.66 E-value=4.5e-16 Score=181.03 Aligned_cols=155 Identities=14% Similarity=0.111 Sum_probs=111.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---h--------------------hccccccCCcc---ch
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---A--------------------QIGCFVPCDSA---TI 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---a--------------------q~g~~vpa~~~---~~ 592 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... . +.-.++|.... .+
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPEL 93 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCC
Confidence 4578899999999999999999999999999999765421 0 00123333211 01
Q ss_pred hH-------------------------HHHHHHhcCCchhH-hhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q psy5289 593 SV-------------------------VDQIFTRVGAADSQ-YRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTS 645 (813)
Q Consensus 593 ~~-------------------------~d~i~~~~~~~d~~-~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd 645 (813)
++ +..++.++++.+.. ....+++|+++++...+++. +.+|+++|||||++|+|
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD 173 (500)
T TIGR02633 94 SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT 173 (500)
T ss_pred cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 11 12344555554433 34467899998887777665 68999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 646 TFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 646 ~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
+.....+.. ++..+.+ .|.++|++||+.+.. .+++++..+.+|++...
T Consensus 174 ~~~~~~l~~-~l~~l~~-~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 174 EKETEILLD-IIRDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred HHHHHHHHH-HHHHHHh-CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 988777755 5555665 589999999997665 57888888888887544
No 266
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1e-15 Score=164.79 Aligned_cols=152 Identities=17% Similarity=0.160 Sum_probs=102.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----hhcc-----------------------ccccCCccc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----AQIG-----------------------CFVPCDSAT 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----aq~g-----------------------~~vpa~~~~ 591 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... ...| .++|....-
T Consensus 52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (285)
T PRK14254 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP 131 (285)
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 4689999999999999999999999999999999765320 0011 123322110
Q ss_pred --hhHH--------------------HHHHHhcCCc----hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q psy5289 592 --ISVV--------------------DQIFTRVGAA----DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGT 644 (813)
Q Consensus 592 --~~~~--------------------d~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gt 644 (813)
..+. ..++..+++. +.+....+.+|+++++...+++. +.+|+++|||||++|+
T Consensus 132 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~L 211 (285)
T PRK14254 132 FPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASAL 211 (285)
T ss_pred CcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 0111 1233344442 23445567888888776666554 6899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCC-ceEeeEEE
Q psy5289 645 STFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIP-TFRNVQVS 693 (813)
Q Consensus 645 d~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~-~v~~~~~~ 693 (813)
|+.....+.. ++..+.+ +.++|++||+.+.. .+++++. .+.+|.+.
T Consensus 212 D~~~~~~l~~-~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i~ 259 (285)
T PRK14254 212 DPVATSKIED-LIEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGELV 259 (285)
T ss_pred CHHHHHHHHH-HHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEE
Confidence 9987766644 5555654 47899999998775 4677643 23555553
No 267
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7.8e-16 Score=163.02 Aligned_cols=153 Identities=13% Similarity=0.092 Sum_probs=102.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-h---hcc-----------------------ccccCCccc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-A---QIG-----------------------CFVPCDSAT 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-a---q~g-----------------------~~vpa~~~~ 591 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... . ..| .++|....-
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 98 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCcc
Confidence 4688999999999999999999999999999999764210 0 011 122222110
Q ss_pred --hhHHH----------------------HHHHhcCCc----hhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q psy5289 592 --ISVVD----------------------QIFTRVGAA----DSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGR 642 (813)
Q Consensus 592 --~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~ 642 (813)
.++.+ .++.+++.. +.+......+|+++++...+++ .+.+|+++|||||++
T Consensus 99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~ 178 (253)
T PRK14261 99 FPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCS 178 (253)
T ss_pred CcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 01111 112222321 1233445567777776655555 468999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
|+|+.....+.. ++..+.+ +.++|++||+.+.. .+++++..+.+|++..
T Consensus 179 gLD~~~~~~l~~-~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14261 179 ALDPIATAKIED-LIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKLIE 228 (253)
T ss_pred cCCHHHHHHHHH-HHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 999988777644 5555554 57999999997665 5788777777776643
No 268
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=8.9e-16 Score=162.37 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=105.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----hhcc-----------------------ccccCCcc-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----AQIG-----------------------CFVPCDSA- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----aq~g-----------------------~~vpa~~~- 590 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... ...| .++|....
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 3578899999999999999999999999999999875321 0011 22332211
Q ss_pred -chhHHH----------------------HHHHhcCCc----hhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q psy5289 591 -TISVVD----------------------QIFTRVGAA----DSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGR 642 (813)
Q Consensus 591 -~~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~ 642 (813)
..++.+ .++..+++. +........+|+++++...+++ .+.+|+++|||||++
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 176 (251)
T PRK14270 97 FPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTS 176 (251)
T ss_pred CCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 011111 122333331 2234455678887777666555 468999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~~ 695 (813)
|+|+.....+.. ++..+.+ +.++|++||+.+. ..+++++..+.+|++...
T Consensus 177 ~LD~~~~~~l~~-~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 177 ALDPISTLKIED-LMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred cCCHHHHHHHHH-HHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEe
Confidence 999987777744 5555554 5789999999876 467888877888877644
No 269
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.65 E-value=5.8e-16 Score=160.26 Aligned_cols=147 Identities=10% Similarity=0.024 Sum_probs=99.3
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh------------------------hccccccCCcc--chh
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA------------------------QIGCFVPCDSA--TIS 593 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la------------------------q~g~~vpa~~~--~~~ 593 (813)
.+.++++|++.+|++++|+|||||||||||++++++.... +.-.++|.... ..+
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t 94 (218)
T cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNAT 94 (218)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCcccccc
Confidence 4778999999999999999999999999999997542100 00112333221 111
Q ss_pred HHH--------------HHHHhcCCchhH-----------hhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChh
Q psy5289 594 VVD--------------QIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTF 647 (813)
Q Consensus 594 ~~d--------------~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~ 647 (813)
+.+ .+...++..+.+ ......+++++++...+++. +.+|+++|+|||++|+|+.
T Consensus 95 ~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~ 174 (218)
T cd03290 95 VEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIH 174 (218)
T ss_pred HHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHH
Confidence 111 222333332221 12346788888776666655 6899999999999999998
Q ss_pred hHHHHHHH-HHHHHHhcCCCEEEEEcCChHHHhhcCCCCce
Q psy5289 648 DGFGMACS-IARELASHRQPFTLFATHFHEIALLSRVIPTF 687 (813)
Q Consensus 648 d~~~i~~~-i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v 687 (813)
....+... +++.+.+ .|.++|++||+.+....++++..+
T Consensus 175 ~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~~~~d~i~~l 214 (218)
T cd03290 175 LSDHLMQEGILKFLQD-DKRTLVLVTHKLQYLPHADWIIAM 214 (218)
T ss_pred HHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHhhCCEEEEe
Confidence 87777653 6666665 589999999998877666654333
No 270
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.4e-15 Score=162.53 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=105.6
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----hhc--------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----AQI-------------- 581 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----aq~-------------- 581 (813)
..+.+++....+ +...+.++++|++.+|++++|+||||||||||||+++++... ...
T Consensus 12 ~~l~i~nl~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISY-----GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEE-----CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 356666654322 124588999999999999999999999999999999765320 011
Q ss_pred ---------cccccCCccch--hHHHH--------------------HHHhcCCc----hhHhhccchhHHHHHHHHHHH
Q psy5289 582 ---------GCFVPCDSATI--SVVDQ--------------------IFTRVGAA----DSQYRGISTFMMEMKETATVI 626 (813)
Q Consensus 582 ---------g~~vpa~~~~~--~~~d~--------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il 626 (813)
-.++|....-+ ++.+. ++..++.. +.+......+|+++++...++
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~la 166 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIA 166 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHH
Confidence 12333321100 11111 22223321 123334466888887766655
Q ss_pred Hh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEe
Q psy5289 627 KK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRN 689 (813)
Q Consensus 627 ~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~ 689 (813)
+. +.+|+++|||||++|+|+.....+.. ++..+.+ +.++|++||+.+.. .+++++..+.+
T Consensus 167 ral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 167 RTIAIEPEVILMDEPCSALDPISTLKIEE-TMHELKK--NFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhc--CCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 54 68999999999999999987777644 5555543 68999999997655 57777655554
No 271
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.65 E-value=4.8e-16 Score=180.78 Aligned_cols=171 Identities=16% Similarity=0.106 Sum_probs=118.5
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------------------
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------------------- 578 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------------------- 578 (813)
.+++++.....-. .+...+.++++|++.+|++++|+||||||||||||+++++...
T Consensus 257 ~l~~~~l~~~~~~--~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 257 ILEARNLTCWDVI--NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI 334 (500)
T ss_pred eEEEeCCcccccc--cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 4666665432200 0123578899999999999999999999999999999765321
Q ss_pred -hhccccccCCcc------c--------------h------------hHHHHHHHhcCCch-hHhhccchhHHHHHHHHH
Q psy5289 579 -AQIGCFVPCDSA------T--------------I------------SVVDQIFTRVGAAD-SQYRGISTFMMEMKETAT 624 (813)
Q Consensus 579 -aq~g~~vpa~~~------~--------------~------------~~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~ 624 (813)
.++ .++|.... . . ..+..++.+++..+ .......++|+++++...
T Consensus 335 ~~~i-~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 413 (500)
T TIGR02633 335 RAGI-AMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAV 413 (500)
T ss_pred hCCC-EEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHH
Confidence 011 12222210 0 0 01234566677653 456667889999888777
Q ss_pred HHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEE
Q psy5289 625 VIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 625 il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~ 696 (813)
+++. +.+|+++||||||+|+|+.....+ ..++..+.+ .|.++|++|||.+.. .+++++..+.+|++....
T Consensus 414 la~al~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~l~~-~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 414 LAKMLLTNPRVLILDEPTRGVDVGAKYEI-YKLINQLAQ-EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HHHHHhhCCCEEEEcCCCCCcCHhHHHHH-HHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 7765 589999999999999999876666 446666766 588999999997655 578887777777765443
No 272
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.65 E-value=8.6e-16 Score=157.64 Aligned_cols=164 Identities=13% Similarity=0.064 Sum_probs=105.8
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------h
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------A 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------a 579 (813)
+.+.+++....+- .....+.++++|++.+|++++|+||||||||||+|+++++... .
T Consensus 5 ~~l~~~~l~~~~~---~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 81 (207)
T cd03369 5 GEIEVENLSVRYA---PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81 (207)
T ss_pred CeEEEEEEEEEeC---CCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHH
Confidence 4466665543221 0113688999999999999999999999999999999754211 0
Q ss_pred hccccccCCccc--hhHHHHH-----------HHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCC
Q psy5289 580 QIGCFVPCDSAT--ISVVDQI-----------FTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTS 645 (813)
Q Consensus 580 q~g~~vpa~~~~--~~~~d~i-----------~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd 645 (813)
+.-.++|....- .++.+.+ ...+. +......+++++++...+++ .+.+|+++|||||++|+|
T Consensus 82 ~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 157 (207)
T cd03369 82 SSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASID 157 (207)
T ss_pred hhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCC
Confidence 111233333210 1122211 11111 22345667776666555444 468999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 646 TFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 646 ~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
+.....+.. ++..+. .+.++|++||+.+....++++..+.+|++.
T Consensus 158 ~~~~~~l~~-~l~~~~--~~~tiii~th~~~~~~~~d~v~~l~~g~i~ 202 (207)
T cd03369 158 YATDALIQK-TIREEF--TNSTILTIAHRLRTIIDYDKILVMDAGEVK 202 (207)
T ss_pred HHHHHHHHH-HHHHhc--CCCEEEEEeCCHHHHhhCCEEEEEECCEEE
Confidence 987666544 444443 378999999998877667777667777664
No 273
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.4e-16 Score=180.77 Aligned_cols=165 Identities=12% Similarity=0.088 Sum_probs=117.0
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------- 578 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------- 578 (813)
..+.+++..... ..+.++++|++.+|++++|+||||||||||+|+++++...
T Consensus 264 ~~l~~~~l~~~~-------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 336 (510)
T PRK09700 264 TVFEVRNVTSRD-------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAV 336 (510)
T ss_pred cEEEEeCccccC-------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHH
Confidence 346666665331 1278999999999999999999999999999999654210
Q ss_pred -hhccccccCCc---c---chh------------------------------HHHHHHHhcCCc-hhHhhccchhHHHHH
Q psy5289 579 -AQIGCFVPCDS---A---TIS------------------------------VVDQIFTRVGAA-DSQYRGISTFMMEMK 620 (813)
Q Consensus 579 -aq~g~~vpa~~---~---~~~------------------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~ 620 (813)
..+ .++|... . ..+ .++.++.++++. +.......++|++++
T Consensus 337 ~~~i-~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 415 (510)
T PRK09700 337 KKGM-AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQ 415 (510)
T ss_pred HCCc-EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHH
Confidence 011 2344321 0 001 123456667775 556677788999888
Q ss_pred HHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 621 ETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 621 ~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
+...+++. +.+|+++||||||+|+|+.....+.. ++..+.+ .|.++|++|||.+.. .+++++..+.+|++..
T Consensus 416 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~-~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 416 QKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK-VMRQLAD-DGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHH-HHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 87776665 58999999999999999987777644 5555665 589999999997655 5788776677766543
No 274
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.3e-15 Score=160.90 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=103.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----hcc----------------------ccccCCccc-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----QIG----------------------CFVPCDSAT- 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----q~g----------------------~~vpa~~~~- 591 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.... ..| .++|....-
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 46889999999999999999999999999999997653210 011 133322110
Q ss_pred -hhHHHHH----------------------HHhcCCc----hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q psy5289 592 -ISVVDQI----------------------FTRVGAA----DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRG 643 (813)
Q Consensus 592 -~~~~d~i----------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~G 643 (813)
.++.+.+ +..++.. +.+......+|+++++...+++. +.+|+|+|||||++|
T Consensus 96 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 175 (249)
T PRK14253 96 PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSA 175 (249)
T ss_pred cccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 1111211 1122221 12233445677777776665554 689999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEE
Q psy5289 644 TSTFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 644 td~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~ 694 (813)
+|+.....+.. +++.+.+ +.++|++||+.+. ..+++++..+.+|++..
T Consensus 176 LD~~~~~~l~~-~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~ 224 (249)
T PRK14253 176 LDPIATHKIEE-LMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELVE 224 (249)
T ss_pred CCHHHHHHHHH-HHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99987666644 5556654 5899999999776 45788877777777654
No 275
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=9.5e-16 Score=162.26 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=104.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--hh--hcc-----------------------ccccCCccc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--LA--QIG-----------------------CFVPCDSAT 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--la--q~g-----------------------~~vpa~~~~ 591 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.. .. +.| .++|....-
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 457889999999999999999999999999999976521 00 011 133332110
Q ss_pred --hhHHHHH----------------------HHhcCCc----hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q psy5289 592 --ISVVDQI----------------------FTRVGAA----DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGR 642 (813)
Q Consensus 592 --~~~~d~i----------------------~~~~~~~----d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~ 642 (813)
.++.+.+ +.+++.. +........+|+++++...+++. +.+|+++|||||++
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~ 177 (252)
T PRK14255 98 FPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTS 177 (252)
T ss_pred CCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 1111111 1222221 22334456778888776666554 68999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
|+|+.....+.. ++..+.+ +.++|++||+.+.. ..++++..+.+|++...
T Consensus 178 ~LD~~~~~~l~~-~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 178 ALDPISSTQIEN-MLLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred cCCHHHHHHHHH-HHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 999988777755 4545554 47999999998765 57888777777777543
No 276
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.65 E-value=5.8e-16 Score=181.25 Aligned_cols=155 Identities=18% Similarity=0.099 Sum_probs=112.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------h------------------------hccccccCC
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------A------------------------QIGCFVPCD 588 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------a------------------------q~g~~vpa~ 588 (813)
..+.++++|++..|++++|+||||||||||+|+++++... + ++ .++|..
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i-g~v~Q~ 100 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKI-AMIFQE 100 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCce-EEEecC
Confidence 3578899999999999999999999999999999765421 0 11 233332
Q ss_pred cc-----chh----------------------HHHHHHHhcCCch---hHhhccchhHHHHHHHHHHHHh-CCCCcEEEE
Q psy5289 589 SA-----TIS----------------------VVDQIFTRVGAAD---SQYRGISTFMMEMKETATVIKK-CTENSLVII 637 (813)
Q Consensus 589 ~~-----~~~----------------------~~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~~-~~~~~Llll 637 (813)
.. ... .++.++..+|+.+ ......+++|++++|...+++. +.+|+++||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llll 180 (529)
T PRK15134 101 PMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIA 180 (529)
T ss_pred chhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 10 000 0123445566643 2455678899888887776665 689999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 638 DELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 638 DEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
||||+|+|+.....+.. ++..+.++.|.++|++||+.+.+ .+++++..+.+|++...
T Consensus 181 DEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~ 238 (529)
T PRK15134 181 DEPTTALDVSVQAQILQ-LLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQ 238 (529)
T ss_pred cCCCCccCHHHHHHHHH-HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999988777744 55556543488999999998765 57898888899887654
No 277
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6.1e-16 Score=179.82 Aligned_cols=154 Identities=15% Similarity=0.100 Sum_probs=110.2
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh-------hh--------------hccccccCCc------cch
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-------LA--------------QIGCFVPCDS------ATI 592 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~-------la--------------q~g~~vpa~~------~~~ 592 (813)
.+.++++|++..|++++|+||||||||||+|++++... +. +.-.++|... ...
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 37889999999999999999999999999999864321 00 0001222221 000
Q ss_pred h---------------------------HHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q psy5289 593 S---------------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRG 643 (813)
Q Consensus 593 ~---------------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~G 643 (813)
+ ....++.++++. +.......++|+++++...+++. +.+|+|+||||||+|
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 0 123355666763 45666778999998887777665 589999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 644 TSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 644 td~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
+|+.....+.. ++..+.+ .|.++|++|||.+.. .+++++..+.+|.+...
T Consensus 427 LD~~~~~~l~~-~l~~l~~-~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~ 477 (501)
T PRK11288 427 IDVGAKHEIYN-VIYELAA-QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE 477 (501)
T ss_pred CCHhHHHHHHH-HHHHHHh-CCCEEEEECCCHHHHHhhCCEEEEEECCEEEEE
Confidence 99988777754 5555666 589999999997765 57887776767665543
No 278
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=4.4e-16 Score=148.38 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=113.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh----------------hhhccccccCCccchh---------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF----------------LAQIGCFVPCDSATIS--------- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~----------------laq~g~~vpa~~~~~~--------- 593 (813)
.-|..++++....|+++.|+|.+|||||||||+|..+-. ....|-.+|++...+.
T Consensus 19 ~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mV 98 (256)
T COG4598 19 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMV 98 (256)
T ss_pred chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHh
Confidence 447889999999999999999999999999999954321 1223444555432111
Q ss_pred -----------H----------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeC
Q psy5289 594 -----------V----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDE 639 (813)
Q Consensus 594 -----------~----------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDE 639 (813)
+ ....+.++|+.+........++++.+|.+.|.+. |..|+++++||
T Consensus 99 FQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDE 178 (256)
T COG4598 99 FQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDE 178 (256)
T ss_pred hhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecC
Confidence 1 1235667787777777778889999888888776 68999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEE
Q psy5289 640 LGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVS 693 (813)
Q Consensus 640 p~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~ 693 (813)
||+.+||.-.-.+. .++..|++ .|.|.+++||.+.+++ ...++..+.+|.++
T Consensus 179 PTSALDPElVgEVL-kv~~~LAe-EgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE 231 (256)
T COG4598 179 PTSALDPELVGEVL-KVMQDLAE-EGRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231 (256)
T ss_pred CcccCCHHHHHHHH-HHHHHHHH-hCCeEEEEeeehhHHHhhhhheEEeecceec
Confidence 99999997655553 47778887 6999999999999886 33444445555444
No 279
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.6e-15 Score=162.40 Aligned_cols=168 Identities=15% Similarity=0.107 Sum_probs=111.3
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----hhcc-------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----AQIG------------- 582 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----aq~g------------- 582 (813)
+.+.+++....+ +...+.++++|++.+|++++|+||||||||||+|++++.... ...|
T Consensus 24 ~~l~~~nl~~~~-----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 24 TALEVRNLNLFY-----GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred cEEEEEEEEEEE-----CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 457777665433 124688999999999999999999999999999999765321 0111
Q ss_pred ----------ccccCCccc--hhHHHHH----------------------HHhcCCch----hHhhccchhHHHHHHHHH
Q psy5289 583 ----------CFVPCDSAT--ISVVDQI----------------------FTRVGAAD----SQYRGISTFMMEMKETAT 624 (813)
Q Consensus 583 ----------~~vpa~~~~--~~~~d~i----------------------~~~~~~~d----~~~~~~s~f~~e~~~~~~ 624 (813)
.++|.+..- .++.+.+ +..++..+ .+......+|+++++...
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred cCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 133332110 0122221 22223321 122344567777777665
Q ss_pred HHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 625 VIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 625 il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
+++ .+.+|+++|||||++|+|+.....+.. ++..+.+ +.++|++||+.+.. .+++++..+.+|++...
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEE-LITELKS--KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHh--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEec
Confidence 555 468999999999999999987666644 5555554 57999999998764 67888877888777543
No 280
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=2.3e-15 Score=160.58 Aligned_cols=167 Identities=14% Similarity=0.089 Sum_probs=110.3
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------- 578 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------- 578 (813)
+.|.+++....+ +...+.++++|++.+|++++|+||||||||||+|+++++...
T Consensus 15 ~~l~~~~l~~~~-----~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYY-----GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEE-----CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 456666654332 124689999999999999999999999999999999765310
Q ss_pred --------hhccccccCCccc--hhHHHH----------------------HHHhcCCc----hhHhhccchhHHHHHHH
Q psy5289 579 --------AQIGCFVPCDSAT--ISVVDQ----------------------IFTRVGAA----DSQYRGISTFMMEMKET 622 (813)
Q Consensus 579 --------aq~g~~vpa~~~~--~~~~d~----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~ 622 (813)
.+.-.++|....- .++.+. .+..++.. +........+|+++++.
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 0001233332110 011111 12223321 22234456677777776
Q ss_pred HHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 623 ATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 623 ~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
..+.+ .+.+|+++|||||++|+|+.....+.. ++..+.+ ++++|++||+.+.. .+++++..+.+|.+..
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~-~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIEE-LISDLKN--KVTILIVTHNMQQAARVSDYTAYMYMGELIE 240 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 66555 468999999999999999987776644 5555554 58999999998766 5788877777777654
No 281
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.64 E-value=6.2e-16 Score=180.98 Aligned_cols=155 Identities=18% Similarity=0.177 Sum_probs=112.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh------h-----------------hhccccccCCcc-----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF------L-----------------AQIGCFVPCDSA----- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~------l-----------------aq~g~~vpa~~~----- 590 (813)
..+.++++|++..|++++|+||||||||||+|+++++.. + ..+ .++|....
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i-~~v~q~~~~~l~~ 377 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRI-QVVFQDPNSSLNP 377 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhce-EEEEeCchhhcCC
Confidence 357899999999999999999999999999999976421 0 011 23333210
Q ss_pred chhH-----------------------HHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q psy5289 591 TISV-----------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTS 645 (813)
Q Consensus 591 ~~~~-----------------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd 645 (813)
..++ +..++.++++. +......+++|+++++...+++. +.+|+++||||||+|+|
T Consensus 378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 457 (529)
T PRK15134 378 RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457 (529)
T ss_pred cccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccC
Confidence 0111 12345566765 34566778899998887776665 58999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 646 TFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 646 ~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
+.....+.. ++..+.++.|.++|++||+.+.+ .+++++..+.+|++...
T Consensus 458 ~~~~~~l~~-~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 507 (529)
T PRK15134 458 KTVQAQILA-LLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQ 507 (529)
T ss_pred HHHHHHHHH-HHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEE
Confidence 988777755 55555543488999999997665 57888888888877544
No 282
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.8e-15 Score=160.02 Aligned_cols=153 Identities=14% Similarity=0.135 Sum_probs=102.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh----cc-----------------------ccccCCccc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ----IG-----------------------CFVPCDSAT 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq----~g-----------------------~~vpa~~~~ 591 (813)
..+.++++|++.+|++++|+||||||||||+|+++++..... .| .++|....-
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence 357889999999999999999999999999999976532110 11 122222110
Q ss_pred --hhHHHH----------------------HHHhcCCc----hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q psy5289 592 --ISVVDQ----------------------IFTRVGAA----DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGR 642 (813)
Q Consensus 592 --~~~~d~----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~ 642 (813)
.++.+. ++..+++. +........+|+++++...+++. +.+|+++|||||++
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~ 176 (251)
T PRK14249 97 FPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCS 176 (251)
T ss_pred CcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 011111 11222321 12334456677777776655554 68999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
|+|+.....+.. ++..+. .++++|++||+.+.. .+++++..+.+|++..
T Consensus 177 ~LD~~~~~~l~~-~l~~~~--~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14249 177 ALDPVSTMRIEE-LMQELK--QNYTIAIVTHNMQQAARASDWTGFLLTGDLVE 226 (251)
T ss_pred cCCHHHHHHHHH-HHHHHh--cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE
Confidence 999988777644 555554 378999999997665 5678777777776654
No 283
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=9.3e-16 Score=167.85 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=118.4
Q ss_pred cceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------h-------------
Q psy5289 519 TGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------A------------- 579 (813)
Q Consensus 519 ~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------a------------- 579 (813)
.+.+.+++...-+-. +..++.++++|++.+|++++|+|||||||||||+++++.... +
T Consensus 78 ~~~i~~~nls~~y~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 78 ANVFEIRNFNFWYMN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CceEEEEeeEEEecC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 356777776543321 234689999999999999999999999999999999765421 0
Q ss_pred --------hccccccCCcc--chhHHHH----------------------HHHhcCCc----hhHhhccchhHHHHHHHH
Q psy5289 580 --------QIGCFVPCDSA--TISVVDQ----------------------IFTRVGAA----DSQYRGISTFMMEMKETA 623 (813)
Q Consensus 580 --------q~g~~vpa~~~--~~~~~d~----------------------i~~~~~~~----d~~~~~~s~f~~e~~~~~ 623 (813)
+.-.++|.... ..++.+. .+...++. +.+......+|++++++.
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl 234 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL 234 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHH
Confidence 01123333321 1111111 12233322 234455677888888877
Q ss_pred HHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 624 TVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 624 ~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
.++++ +.+|+++|||||++|+|+.....+ ..++..+.+ ++|+|++||+++.. .+++++..+.+|++....+
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i-~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKI-EELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 66665 689999999999999999877775 445555654 68999999998775 5689988888888865544
No 284
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.9e-15 Score=161.95 Aligned_cols=166 Identities=14% Similarity=0.111 Sum_probs=110.5
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----hc---------------
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----QI--------------- 581 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----q~--------------- 581 (813)
.+.+++...-+ +...+.++++|++.+|++++|+||||||||||+|+++++.... ..
T Consensus 21 ~l~i~nl~~~~-----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 95 (276)
T PRK14271 21 AMAAVNLTLGF-----AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95 (276)
T ss_pred EEEEeeEEEEE-----CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch
Confidence 45555544322 2356889999999999999999999999999999997653210 00
Q ss_pred -------cccccCCcc--chhHHH----------------------HHHHhcCCch----hHhhccchhHHHHHHHHHHH
Q psy5289 582 -------GCFVPCDSA--TISVVD----------------------QIFTRVGAAD----SQYRGISTFMMEMKETATVI 626 (813)
Q Consensus 582 -------g~~vpa~~~--~~~~~d----------------------~i~~~~~~~d----~~~~~~s~f~~e~~~~~~il 626 (813)
..++|.... ..++.+ .++..+++.+ .+......+|+++++...++
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred hHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 113333211 011111 1233344432 23344567888877766655
Q ss_pred Hh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEE
Q psy5289 627 KK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 627 ~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~ 694 (813)
+. +.+|+++|||||++|+|+.....+.. ++..+.+ ++++|++||+.+. ..+++++..+.+|++..
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i~~ 242 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEE-FIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVE 242 (276)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 54 68999999999999999987776644 5555554 4799999999875 56788877777777654
No 285
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.7e-15 Score=162.01 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=103.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----hhcc-----------------------ccccCCccc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----AQIG-----------------------CFVPCDSAT 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----aq~g-----------------------~~vpa~~~~ 591 (813)
..+.++++|++.+|++++|+||||||||||+|+|+++... ...| .|+|.+..-
T Consensus 37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 116 (271)
T PRK14238 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNP 116 (271)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcc
Confidence 3578999999999999999999999999999999775420 1111 122322110
Q ss_pred --hhHHHHHH----------------------HhcC----CchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q psy5289 592 --ISVVDQIF----------------------TRVG----AADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGR 642 (813)
Q Consensus 592 --~~~~d~i~----------------------~~~~----~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~ 642 (813)
.++.+.+. ..++ ..+.+......+|+++++...+++. +.+|+++|||||++
T Consensus 117 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~ 196 (271)
T PRK14238 117 FPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTS 196 (271)
T ss_pred ccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 11222221 1111 1112233455677777776665554 68999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
|+|+.....+.. ++..+.+ +.++|++||+.+.. .+++++..+.+|++...
T Consensus 197 ~LD~~~~~~l~~-~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 197 ALDPISTLKVEE-LVQELKK--DYSIIIVTHNMQQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred cCCHHHHHHHHH-HHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence 999988777755 4555554 68999999998764 57888777777776543
No 286
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.64 E-value=8.3e-16 Score=178.71 Aligned_cols=153 Identities=16% Similarity=0.207 Sum_probs=111.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------------------hhccccccCCcc---chh
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------------------AQIGCFVPCDSA---TIS 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----------------------aq~g~~vpa~~~---~~~ 593 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... .++ .++|.... ..+
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i-~~v~q~~~~~~~~t 95 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV-AIIYQELHLVPEMT 95 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE-EEEEechhccCCCC
Confidence 4578899999999999999999999999999999654210 012 23332210 011
Q ss_pred H------------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q psy5289 594 V------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 594 ~------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d 648 (813)
+ +..++.++|+.+......+++|+++++...+++. +.+|+++||||||+|+|+..
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (501)
T PRK11288 96 VAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175 (501)
T ss_pred HHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHH
Confidence 1 2234555666555556678899888887766655 68999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
...+.. ++..+.+ .|.++|++||+.+.. .+++++..+.+|++..
T Consensus 176 ~~~l~~-~l~~~~~-~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 176 IEQLFR-VIRELRA-EGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred HHHHHH-HHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 777744 5555665 589999999997665 5788888888888754
No 287
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=2e-15 Score=160.58 Aligned_cols=169 Identities=15% Similarity=0.183 Sum_probs=109.9
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----hcc--------------
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----QIG-------------- 582 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----q~g-------------- 582 (813)
.+.+++...-+ +...+.++++|++.+|++++|+||||||||||+++++++.... ..|
T Consensus 7 ~l~~~nl~~~~-----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 7 AIKVNNLSFYY-----DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred eEEEeeEEEEe-----CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 45555554322 1235788999999999999999999999999999997653321 011
Q ss_pred ---------ccccCCcc--chhHHHH----------------------HHHhcCCch----hHhhccchhHHHHHHHHHH
Q psy5289 583 ---------CFVPCDSA--TISVVDQ----------------------IFTRVGAAD----SQYRGISTFMMEMKETATV 625 (813)
Q Consensus 583 ---------~~vpa~~~--~~~~~d~----------------------i~~~~~~~d----~~~~~~s~f~~e~~~~~~i 625 (813)
.++|.... ..++.+. ++..+++.+ ........+|+++++...+
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 161 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCI 161 (261)
T ss_pred chHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 12222211 0111111 122233211 2234446788888776666
Q ss_pred HHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEe-----eEEEEE
Q psy5289 626 IKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRN-----VQVSAL 695 (813)
Q Consensus 626 l~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~-----~~~~~~ 695 (813)
++. +.+|+++|||||++|+|+.....+.. ++..++...+.++|++||+.+.. .+++++..+.+ |++...
T Consensus 162 aral~~~p~vllLDEP~~~LD~~~~~~l~~-~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 162 ARALAVKPKVLLMDEPCFGLDPIASMKVES-LIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 554 68999999999999999987766644 44445432488999999997655 57888777777 666544
No 288
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.64 E-value=7.1e-16 Score=178.92 Aligned_cols=167 Identities=12% Similarity=0.044 Sum_probs=116.5
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh-------h--------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-------L-------------- 578 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~-------l-------------- 578 (813)
..|++++.... ...+.++++|++..|++++|+||||||||||+|+++++.. +
T Consensus 249 ~~i~~~~l~~~-------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 321 (491)
T PRK10982 249 VILEVRNLTSL-------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAI 321 (491)
T ss_pred cEEEEeCcccc-------cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHH
Confidence 35666665432 1247889999999999999999999999999999965421 0
Q ss_pred hhccccccCCcc------chh---------------------------HHHHHHHhcCCc-hhHhhccchhHHHHHHHHH
Q psy5289 579 AQIGCFVPCDSA------TIS---------------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETAT 624 (813)
Q Consensus 579 aq~g~~vpa~~~------~~~---------------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~ 624 (813)
.+.-.++|.... ..+ .+..++.+++.. +.......++|+++++...
T Consensus 322 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 401 (491)
T PRK10982 322 NHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVI 401 (491)
T ss_pred HCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHH
Confidence 000123333210 000 012234455553 3456667889988888777
Q ss_pred HHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 625 VIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 625 il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
+++. +.+|.++||||||+|+|+.....+.. ++..+.+ .|.++|++|||.+.. .+++++..+.+|++...
T Consensus 402 la~al~~~p~illLDEPt~gLD~~~~~~~~~-~l~~l~~-~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 402 IGRWLLTQPEILMLDEPTRGIDVGAKFEIYQ-LIAELAK-KDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred HHHHHhcCCCEEEEcCCCcccChhHHHHHHH-HHHHHHH-CCCEEEEECCChHHHHhhCCEEEEEECCEEEEE
Confidence 6665 68999999999999999988777744 5666666 589999999997655 57888877877777643
No 289
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.2e-15 Score=170.47 Aligned_cols=157 Identities=15% Similarity=0.189 Sum_probs=119.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh----------------------------hhhccccccCCc-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF----------------------------LAQIGCFVPCDS- 589 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~----------------------------laq~g~~vpa~~- 589 (813)
-.+.++++|+..+|++++|+|.||||||||+|.+++... ..|--..+|.-+
T Consensus 21 V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsV 100 (500)
T COG1129 21 VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSV 100 (500)
T ss_pred ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccH
Confidence 457889999999999999999999999999999965421 111111222110
Q ss_pred ----------cc-hhHH---------HHHHHhcCCchhHhhccchhHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChhh
Q psy5289 590 ----------AT-ISVV---------DQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 590 ----------~~-~~~~---------d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~-~~~~LlllDEp~~Gtd~~d 648 (813)
.. .+++ ..++.+++...........++...+|+..|++.+ .++.+|||||||+.++..+
T Consensus 101 aeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E 180 (500)
T COG1129 101 AENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKE 180 (500)
T ss_pred HHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 01 2222 3467778875457777888999999988888875 5777999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCC-hHHHhhcCCCCceEeeEEEEEEE
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHF-HEIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~-~el~~~~~~~~~v~~~~~~~~~~ 697 (813)
...+.. +++.|++ .|.++||+||. .|+.+++|++..+++|.+....+
T Consensus 181 ~~~Lf~-~ir~Lk~-~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 181 TERLFD-LIRRLKA-QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHH-HHHHHHh-CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 888755 7777886 69999999998 57788999999999998876544
No 290
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.5e-15 Score=160.73 Aligned_cols=154 Identities=17% Similarity=0.166 Sum_probs=103.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----hcc-----------------------ccccCCcc-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----QIG-----------------------CFVPCDSA- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----q~g-----------------------~~vpa~~~- 590 (813)
..+.++++|++.+|++++|+||||||||||+|++++..... ..| .++|....
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 46888999999999999999999999999999998753210 011 12332211
Q ss_pred --chhHHHHHH----------------------HhcCCc----hhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCC
Q psy5289 591 --TISVVDQIF----------------------TRVGAA----DSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELG 641 (813)
Q Consensus 591 --~~~~~d~i~----------------------~~~~~~----d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~ 641 (813)
..++.+.+. ..++.. +......+.+|+++++...+++ .+.+|+++|||||+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 176 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPT 176 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 112222221 111111 1223345677877777655554 46899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 642 ~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
+|+|+.....+.. +++.+.+ +.++|++||+.+.. .+++++..+.+|++...
T Consensus 177 ~~LD~~~~~~l~~-~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 177 SALDPASTARIED-LMTDLKK--VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred ccCCHHHHHHHHH-HHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999987666644 5555553 68999999997765 47888877888877543
No 291
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.63 E-value=1.3e-15 Score=158.22 Aligned_cols=147 Identities=15% Similarity=0.124 Sum_probs=97.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHH-hhhhh---hhhh--------hhcc-ccccC--------------C---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYI-RSIGV---SVFL--------AQIG-CFVPC--------------D--- 588 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTll-r~i~~---~~~l--------aq~g-~~vpa--------------~--- 588 (813)
..+.++++|++..|++++|+||||||||||+ ..+.. ..+. ...| .+.|. +
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTT 87 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCC
Confidence 3567899999999999999999999999996 22210 0000 0000 00010 0
Q ss_pred ----ccchhH-------H------------HHHHHhcCCch-hHhhccchhHHHHHHHHHHHHh-CCCC--cEEEEeCCC
Q psy5289 589 ----SATISV-------V------------DQIFTRVGAAD-SQYRGISTFMMEMKETATVIKK-CTEN--SLVIIDELG 641 (813)
Q Consensus 589 ----~~~~~~-------~------------d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-~~~~--~LlllDEp~ 641 (813)
...++. + ...+.++++.+ ......+++|+++++...+++. +.+| +++|+|||+
T Consensus 88 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt 167 (226)
T cd03270 88 SRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPS 167 (226)
T ss_pred CCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 001110 0 12334455544 3566778899988887776665 4555 699999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCce
Q psy5289 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTF 687 (813)
Q Consensus 642 ~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v 687 (813)
+|+|+.....+... +..+.+ .|.++|++||+++....++++..+
T Consensus 168 ~gLD~~~~~~l~~~-l~~~~~-~g~tii~itH~~~~~~~~d~i~~l 211 (226)
T cd03270 168 IGLHPRDNDRLIET-LKRLRD-LGNTVLVVEHDEDTIRAADHVIDI 211 (226)
T ss_pred cCCCHHHHHHHHHH-HHHHHh-CCCEEEEEEeCHHHHHhCCEEEEe
Confidence 99999887777554 445565 589999999999888888877666
No 292
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.63 E-value=1.5e-15 Score=143.94 Aligned_cols=154 Identities=14% Similarity=0.087 Sum_probs=118.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh------------h-------------hhccc------ccc-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF------------L-------------AQIGC------FVP- 586 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~------------l-------------aq~g~------~vp- 586 (813)
-.|..+|++.++.|+.++|+||+||||||||-.++++-- + .++|+ .+|
T Consensus 23 l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ 102 (228)
T COG4181 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPN 102 (228)
T ss_pred eeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecccc
Confidence 468899999999999999999999999999998865411 0 11221 112
Q ss_pred ----------CCcc------chhHHHHHHHhcCCchhHhhccchhHHHHHHHHH-HHHhCCCCcEEEEeCCCCCCChhhH
Q psy5289 587 ----------CDSA------TISVVDQIFTRVGAADSQYRGISTFMMEMKETAT-VIKKCTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 587 ----------a~~~------~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~-il~~~~~~~LlllDEp~~Gtd~~d~ 649 (813)
..-. .......++.++|+.+.+.....+++++-+|... +...+..|++++-||||..+|...|
T Consensus 103 ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg 182 (228)
T COG4181 103 LTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATG 182 (228)
T ss_pred chhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHH
Confidence 1100 1222346788999999998888888866555544 4455799999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
..++.-+...-. +.|.|.+++|||..++.-|++...+.+|++.
T Consensus 183 ~~iaDLlF~lnr-e~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~ 225 (228)
T COG4181 183 DKIADLLFALNR-ERGTTLVLVTHDPQLAARCDRQLRLRSGRLV 225 (228)
T ss_pred HHHHHHHHHHhh-hcCceEEEEeCCHHHHHhhhheeeeecceec
Confidence 999876655444 4799999999999999999999889998875
No 293
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.63 E-value=6.8e-16 Score=183.48 Aligned_cols=156 Identities=17% Similarity=0.112 Sum_probs=114.7
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh-------h-----------------hhccccccCCcc-----
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-------L-----------------AQIGCFVPCDSA----- 590 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~-------l-----------------aq~g~~vpa~~~----- 590 (813)
.+.++++|++.+|++++|+||||||||||+|+|+++.. + .++ .++|....
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i-~~v~Q~~~~~l~~ 416 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDI-QFIFQDPYASLDP 416 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCe-EEEecCchhhcCC
Confidence 57899999999999999999999999999999965421 0 012 23333210
Q ss_pred chh----------------------HHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCh
Q psy5289 591 TIS----------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTST 646 (813)
Q Consensus 591 ~~~----------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~ 646 (813)
... .+..++..+|+. +.......++|++|+|...+++. +.+|+|+|+|||++|+|+
T Consensus 417 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~ 496 (623)
T PRK10261 417 RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV 496 (623)
T ss_pred CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 011 122355667774 45667778999999987777665 589999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 647 FDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 647 ~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
.....+.. ++..+.++.|.++|++|||.+.+ .+++++..+.+|++....+
T Consensus 497 ~~~~~i~~-ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~ 547 (623)
T PRK10261 497 SIRGQIIN-LLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGP 547 (623)
T ss_pred HHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 88777754 55556553589999999998765 5788888888888765443
No 294
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.63 E-value=5.1e-15 Score=169.67 Aligned_cols=146 Identities=15% Similarity=0.170 Sum_probs=100.6
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----------hccccccCCcc---chhH----------
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----------QIGCFVPCDSA---TISV---------- 594 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----------q~g~~vpa~~~---~~~~---------- 594 (813)
...+.+++++.+.+|+.++|+|+||+|||||||++++..... .+| +++.... ..++
T Consensus 15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~-~l~Q~~~~~~~~tv~~~v~~~~~~ 93 (530)
T COG0488 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVG-YLSQEPPLDPEKTVLDYVIEGFGE 93 (530)
T ss_pred CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEE-EeCCCCCcCCCccHHHHHHhhhHH
Confidence 467888999999999999999999999999999997532100 011 1111110 0001
Q ss_pred -----------------------------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCC
Q psy5289 595 -----------------------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTEN 632 (813)
Q Consensus 595 -----------------------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~ 632 (813)
...++..+|..+. ....+++|++.+....+++. ..+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~p 172 (530)
T COG0488 94 LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEP 172 (530)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCC
Confidence 1123334455444 66778999988876666655 5899
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEee
Q psy5289 633 SLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNV 690 (813)
Q Consensus 633 ~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~ 690 (813)
+++||||| |++.|..++.| +-++|.+..| ++|++|||.++.. ++.++..+.+|
T Consensus 173 DlLLLDEP---TNHLD~~~i~W-Le~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~g 226 (530)
T COG0488 173 DLLLLDEP---TNHLDLESIEW-LEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDRG 226 (530)
T ss_pred CEEEEcCC---CcccCHHHHHH-HHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecCC
Confidence 99999999 66666677877 6778877556 9999999977664 66766555555
No 295
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.7e-15 Score=180.28 Aligned_cols=149 Identities=13% Similarity=0.122 Sum_probs=102.6
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh-----cc----ccccCCc-----cchh-----------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-----IG----CFVPCDS-----ATIS----------- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-----~g----~~vpa~~-----~~~~----------- 593 (813)
..+.++++|++.+|++++|+||||||||||||+|++...... -| .++|... ..++
T Consensus 14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~ 93 (638)
T PRK10636 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQ 93 (638)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHH
Confidence 567889999999999999999999999999999976421100 00 0111100 0000
Q ss_pred ----------------------------------HHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEE
Q psy5289 594 ----------------------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVII 637 (813)
Q Consensus 594 ----------------------------------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~Llll 637 (813)
.+..++..+|.. +......+++|+++++...+++. +.+|+++||
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLL 173 (638)
T PRK10636 94 LEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLL 173 (638)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEE
Confidence 112244556664 34566778999999887776665 689999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEE
Q psy5289 638 DELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQV 692 (813)
Q Consensus 638 DEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~ 692 (813)
||||+|+|+..... +.+.+.+ .+.++|++|||.++. .+++++..+.+|++
T Consensus 174 DEPtn~LD~~~~~~----L~~~L~~-~~~tviivsHd~~~l~~~~d~i~~L~~G~i 224 (638)
T PRK10636 174 DEPTNHLDLDAVIW----LEKWLKS-YQGTLILISHDRDFLDPIVDKIIHIEQQSL 224 (638)
T ss_pred cCCCCcCCHHHHHH----HHHHHHh-CCCeEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence 99999999865433 4455554 467999999997665 57777665665544
No 296
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.1e-15 Score=160.36 Aligned_cols=147 Identities=16% Similarity=0.100 Sum_probs=98.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------h---------------------hccccccCCcc-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------A---------------------QIGCFVPCDSA- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------a---------------------q~g~~vpa~~~- 590 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... + +.-.++|....
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 100 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence 4578899999999999999999999999999999765321 0 00122332211
Q ss_pred -chhHHH--------------------HHHHhcCCch----hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q psy5289 591 -TISVVD--------------------QIFTRVGAAD----SQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGT 644 (813)
Q Consensus 591 -~~~~~d--------------------~i~~~~~~~d----~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gt 644 (813)
..++.+ .++..+++.. ........+++++++...+++. +.+|+++|||||++|+
T Consensus 101 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgL 180 (261)
T PRK14263 101 FSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSAL 180 (261)
T ss_pred ccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence 111111 2333344322 1223445688888776665554 6899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceE
Q psy5289 645 STFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFR 688 (813)
Q Consensus 645 d~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~ 688 (813)
|+.....+.. ++..+.+ +.++|++||+.+. ..+++++..+.
T Consensus 181 D~~~~~~l~~-~l~~~~~--~~tii~isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 181 DPIATRRVEE-LMVELKK--DYTIALVTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred CHHHHHHHHH-HHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEe
Confidence 9988777644 4455543 6899999999875 56788765553
No 297
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=3.7e-15 Score=158.77 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=97.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----hhcc-----------------------ccccCCccc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----AQIG-----------------------CFVPCDSAT 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----aq~g-----------------------~~vpa~~~~ 591 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... ...| .++|....-
T Consensus 23 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 102 (264)
T PRK14243 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNP 102 (264)
T ss_pred EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcc
Confidence 4578899999999999999999999999999999764310 0111 122222110
Q ss_pred --hhHHHH--------------------HHHhcCCch----hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q psy5289 592 --ISVVDQ--------------------IFTRVGAAD----SQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGT 644 (813)
Q Consensus 592 --~~~~d~--------------------i~~~~~~~d----~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gt 644 (813)
.++.+. ++..++..+ ........+|+++++...+++. +.+|+++|||||++|+
T Consensus 103 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L 182 (264)
T PRK14243 103 FPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSAL 182 (264)
T ss_pred ccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 011111 122223221 1233445678777776665554 6899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceE
Q psy5289 645 STFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFR 688 (813)
Q Consensus 645 d~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~ 688 (813)
|+.....+.. ++..+.+ +.++|++||+.+. ..+++++..++
T Consensus 183 D~~~~~~l~~-~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 183 DPISTLRIEE-LMHELKE--QYTIIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred CHHHHHHHHH-HHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEe
Confidence 9988777644 5555554 4799999999765 56778766565
No 298
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=2.1e-15 Score=147.92 Aligned_cols=159 Identities=18% Similarity=0.168 Sum_probs=112.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh---------------------------hhhh---cccc----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV---------------------------FLAQ---IGCF---- 584 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~---------------------------~laq---~g~~---- 584 (813)
+-+.++++|+...|++++|+||||+|||||||.+.+-. +|.| +.++
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~ 93 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQ 93 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHH
Confidence 56788999999999999999999999999999984310 1111 1111
Q ss_pred -------ccCCcc-----chhHHHHHHHhcCCchhHhhccchhHHHHHHH---HHHHHhCC----CCcEEEEeCCCCCCC
Q psy5289 585 -------VPCDSA-----TISVVDQIFTRVGAADSQYRGISTFMMEMKET---ATVIKKCT----ENSLVIIDELGRGTS 645 (813)
Q Consensus 585 -------vpa~~~-----~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~---~~il~~~~----~~~LlllDEp~~Gtd 645 (813)
+|-... .-.+..+.+.+.++..-..+..-++|++.++. +..++... .+..++|||||+.+|
T Consensus 94 eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLD 173 (259)
T COG4559 94 EVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD 173 (259)
T ss_pred HHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccc
Confidence 122111 12234556666666655566666777665554 44444433 345999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEEECC
Q psy5289 646 TFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQED 699 (813)
Q Consensus 646 ~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~~~~ 699 (813)
......+.. +.+.+.. .|+.|+.+-||..++. ++|++..+.+|++.+...+.
T Consensus 174 i~HQ~~tl~-laR~la~-~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 174 IAHQHHTLR-LARQLAR-EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred hHHHHHHHH-HHHHHHh-cCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 988777655 5666776 5899999999999986 78998889999998876643
No 299
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.6e-15 Score=158.49 Aligned_cols=147 Identities=15% Similarity=0.154 Sum_probs=98.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----hcc-----------------------ccccCCcc-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----QIG-----------------------CFVPCDSA- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----q~g-----------------------~~vpa~~~- 590 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.... ..| .++|....
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 99 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP 99 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccccc
Confidence 45788999999999999999999999999999997653210 011 12222211
Q ss_pred -chhHHH----------------------HHHHhcCCc----hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q psy5289 591 -TISVVD----------------------QIFTRVGAA----DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGR 642 (813)
Q Consensus 591 -~~~~~d----------------------~i~~~~~~~----d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~ 642 (813)
..++.+ .++..++.. +........+|+++++...+++. +.+|+++|||||++
T Consensus 100 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 179 (259)
T PRK14260 100 FPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCS 179 (259)
T ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 011111 122233332 22334456778777776665554 68999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFR 688 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~ 688 (813)
|+|+.....+.. ++..+.+ +.++|++||+.+.. .+++++..+.
T Consensus 180 ~LD~~~~~~l~~-~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~ 223 (259)
T PRK14260 180 ALDPIATMKVEE-LIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFS 223 (259)
T ss_pred cCCHHHHHHHHH-HHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEe
Confidence 999987766644 4545554 58999999997665 5777765554
No 300
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.62 E-value=1.5e-15 Score=194.59 Aligned_cols=157 Identities=15% Similarity=0.081 Sum_probs=119.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hhhccccccCCcc---chh--
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LAQIGCFVPCDSA---TIS-- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------laq~g~~vpa~~~---~~~-- 593 (813)
..+.++++|++.+|++++|+|||||||||++|++++... ..++| ++|...+ .++
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG-y~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG-YCPQFDAIDDLLTGR 2030 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE-EEeccccCCCCCCHH
Confidence 468899999999999999999999999999999965421 11122 3444321 111
Q ss_pred -------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHH
Q psy5289 594 -------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMA 653 (813)
Q Consensus 594 -------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~ 653 (813)
.++.++..+++.+...+..+++|+|++|...++. .+.+|+++|||||++|+|+.....+
T Consensus 2031 E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l- 2109 (2272)
T TIGR01257 2031 EHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRML- 2109 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-
Confidence 1233566677776667778899999988766555 4689999999999999999887776
Q ss_pred HHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEEC
Q psy5289 654 CSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 654 ~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~~ 698 (813)
|.+++.+.+ .|+++|++||+++.+ .+++++..+.+|++.+.++.
T Consensus 2110 ~~lL~~l~~-~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~ 2154 (2272)
T TIGR01257 2110 WNTIVSIIR-EGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTI 2154 (2272)
T ss_pred HHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 667777766 489999999998766 58999988999999887653
No 301
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.3e-15 Score=160.11 Aligned_cols=157 Identities=15% Similarity=0.112 Sum_probs=114.9
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh---hhhc-----------------------c---ccccCCcc
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF---LAQI-----------------------G---CFVPCDSA 590 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~---laq~-----------------------g---~~vpa~~~ 590 (813)
.+.++++|++.+|++++|+|.+||||||+.++|..+.. .... | ++++++..
T Consensus 19 ~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~ 98 (316)
T COG0444 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM 98 (316)
T ss_pred EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCch
Confidence 56789999999999999999999999999999854432 0111 1 12222110
Q ss_pred -------ch---------------------hHHHHHHHhcCCch---hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEe
Q psy5289 591 -------TI---------------------SVVDQIFTRVGAAD---SQYRGISTFMMEMKETATVIKK-CTENSLVIID 638 (813)
Q Consensus 591 -------~~---------------------~~~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllD 638 (813)
++ ...-.++..+|..+ .+..-...||++|+|+..|+.. +.+|+|||.|
T Consensus 99 ~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIAD 178 (316)
T COG0444 99 TSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIAD 178 (316)
T ss_pred hhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeC
Confidence 00 01123455666654 3445567899999998777665 6899999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 639 ELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 639 Ep~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
|||+++|..-...+.. +++.+.++.|+++||+|||+.+. +++|++..+..|++.....
T Consensus 179 EPTTALDvt~QaqIl~-Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~ 237 (316)
T COG0444 179 EPTTALDVTVQAQILD-LLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGP 237 (316)
T ss_pred CCcchhhHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCC
Confidence 9999999988777755 66677766899999999998765 5889888888888876554
No 302
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1e-15 Score=181.92 Aligned_cols=155 Identities=11% Similarity=0.066 Sum_probs=114.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh-------hh----------------------------hccc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-------LA----------------------------QIGC 583 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~-------la----------------------------q~g~ 583 (813)
..+.++++|++..|++++|+||||||||||+|+++++.. +. .+ .
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~i-g 107 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADM-A 107 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCE-E
Confidence 368899999999999999999999999999999965421 00 12 2
Q ss_pred cccCCc-----cchhH----------------------HHHHHHhcCCch---hHhhccchhHHHHHHHHHHHHh-CCCC
Q psy5289 584 FVPCDS-----ATISV----------------------VDQIFTRVGAAD---SQYRGISTFMMEMKETATVIKK-CTEN 632 (813)
Q Consensus 584 ~vpa~~-----~~~~~----------------------~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~~-~~~~ 632 (813)
+|+... ...++ +..++..+|+.+ .+.....++|++|+|...|++. +.+|
T Consensus 108 ~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P 187 (623)
T PRK10261 108 MIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRP 187 (623)
T ss_pred EEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCC
Confidence 233321 00111 123456667643 3566778999999987777765 6899
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEEE
Q psy5289 633 SLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 633 ~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~~ 695 (813)
+|+||||||+|+|+.....+.+ ++..+.++.|.++|++||+.+. ..+++++..+.+|++...
T Consensus 188 ~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~ 250 (623)
T PRK10261 188 AVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVET 250 (623)
T ss_pred CEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeeccc
Confidence 9999999999999988777755 6666765358999999999765 468999888899988653
No 303
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.62 E-value=2.4e-15 Score=175.80 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=109.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh-------h--h-------------------hccccccCCcc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-------L--A-------------------QIGCFVPCDSA 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~-------l--a-------------------q~g~~vpa~~~ 590 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.. + . ++ .++|....
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i-~~v~q~~~ 375 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYI-GILHQEYD 375 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhE-EEEccCcc
Confidence 357889999999999999999999999999999965421 1 0 01 23333211
Q ss_pred ---chhH--------------------HHHHHHhcCCch-----hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q psy5289 591 ---TISV--------------------VDQIFTRVGAAD-----SQYRGISTFMMEMKETATVIKK-CTENSLVIIDELG 641 (813)
Q Consensus 591 ---~~~~--------------------~d~i~~~~~~~d-----~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~ 641 (813)
..++ +..++.++++.+ .......++|++|++...+++. +.+|+++|||||+
T Consensus 376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt 455 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPT 455 (520)
T ss_pred cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0111 122455666643 3556678899888887666654 6899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 642 ~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
+|+|+.....+.. ++..+.++.|.++|++||+.+.+ .+++++..+.+|++..
T Consensus 456 ~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 508 (520)
T TIGR03269 456 GTMDPITKVDVTH-SILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK 508 (520)
T ss_pred ccCCHHHHHHHHH-HHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999988777755 44455543588999999997765 5788877777776643
No 304
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.8e-15 Score=177.07 Aligned_cols=148 Identities=14% Similarity=0.147 Sum_probs=103.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------hhccccccCCcc---ch-------------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------AQIGCFVPCDSA---TI------------- 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----------aq~g~~vpa~~~---~~------------- 592 (813)
..+.++++|++.+|++++|+||||||||||||+++++... ..+| ++|.... ..
T Consensus 14 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~ 92 (530)
T PRK15064 14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLG-KLRQDQFAFEEFTVLDTVIMGHTEL 92 (530)
T ss_pred cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEeccCCcCCCCcHHHHHHHhhHHH
Confidence 4578899999999999999999999999999999764321 0122 2222110 00
Q ss_pred ----------------------------------------hHHHHHHHhcCCchhHh-hccchhHHHHHHHHHHHHh-CC
Q psy5289 593 ----------------------------------------SVVDQIFTRVGAADSQY-RGISTFMMEMKETATVIKK-CT 630 (813)
Q Consensus 593 ----------------------------------------~~~d~i~~~~~~~d~~~-~~~s~f~~e~~~~~~il~~-~~ 630 (813)
..+..++..+|+.+... ...+++|++|++...+++. +.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~ 172 (530)
T PRK15064 93 WEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFS 172 (530)
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhc
Confidence 01223455666654332 4568899999887777665 58
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEE
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQV 692 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~ 692 (813)
+|+++||||||+|+|+.....+ .+.+.+ .|.++|++||+.++. .+++++..+.+|++
T Consensus 173 ~p~lLlLDEPt~~LD~~~~~~l----~~~l~~-~~~tiiivsHd~~~~~~~~d~i~~l~~g~i 230 (530)
T PRK15064 173 NPDILLLDEPTNNLDINTIRWL----EDVLNE-RNSTMIIISHDRHFLNSVCTHMADLDYGEL 230 (530)
T ss_pred CCCEEEEcCCCcccCHHHHHHH----HHHHHh-CCCeEEEEeCCHHHHHhhcceEEEEeCCEE
Confidence 9999999999999999775554 333444 588999999997765 57787766666554
No 305
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.6e-15 Score=175.80 Aligned_cols=149 Identities=15% Similarity=0.105 Sum_probs=105.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------h---hccccccCCcc-----chh----------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------A---QIGCFVPCDSA-----TIS---------- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------a---q~g~~vpa~~~-----~~~---------- 593 (813)
..+.++++|++.+|++++|+||||||||||||+++++... . .+ .++|.... ..+
T Consensus 332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i-~~~~q~~~~~~~~~~t~~~~~~~~~~ 410 (530)
T PRK15064 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANI-GYYAQDHAYDFENDLTLFDWMSQWRQ 410 (530)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEE-EEEcccccccCCCCCcHHHHHHHhcc
Confidence 4588999999999999999999999999999999754211 0 11 23333210 011
Q ss_pred ------HHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q psy5289 594 ------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQ 665 (813)
Q Consensus 594 ------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~ 665 (813)
.+..++.+++.. +......+++|+++++...+++. +.+|+++|||||++|+|+.....+.. .+.+ .+
T Consensus 411 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~----~l~~-~~ 485 (530)
T PRK15064 411 EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM----ALEK-YE 485 (530)
T ss_pred CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH----HHHH-CC
Confidence 123455667763 55667788999988887766665 68999999999999999987655533 3333 24
Q ss_pred CEEEEEcCChHHHh-hcCCCCceEeeEEE
Q psy5289 666 PFTLFATHFHEIAL-LSRVIPTFRNVQVS 693 (813)
Q Consensus 666 ~~~l~~TH~~el~~-~~~~~~~v~~~~~~ 693 (813)
.++|++|||.++.. +++++..+.+|++.
T Consensus 486 ~tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 486 GTLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 59999999987654 67777666666553
No 306
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=2e-15 Score=146.07 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=116.6
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh---------------------hhhhcccc----ccCCc---
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV---------------------FLAQIGCF----VPCDS--- 589 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~---------------------~laq~g~~----vpa~~--- 589 (813)
+-...|+++|+++.|+.-+|+||||+||||+|-.|.+-+ -.|+.|.- .|.-.
T Consensus 17 GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~l 96 (249)
T COG4674 17 GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENL 96 (249)
T ss_pred ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhc
Confidence 345689999999999999999999999999999985322 12333311 11100
Q ss_pred --------------------------cchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q psy5289 590 --------------------------ATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGR 642 (813)
Q Consensus 590 --------------------------~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~ 642 (813)
..-..+|.++..+|+.+......+.+|-+.+|...|-+. +.+|.|+++|||.+
T Consensus 97 tV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvA 176 (249)
T COG4674 97 TVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVA 176 (249)
T ss_pred cHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccC
Confidence 011123556777777777777777778788877777665 57999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~~ 697 (813)
|....+....+. ++..++. +++++++.||+++.+ +++++..+..|++.+..+
T Consensus 177 GMTd~Et~~tae-Ll~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGs 229 (249)
T COG4674 177 GMTDAETEKTAE-LLKSLAG--KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229 (249)
T ss_pred CCcHHHHHHHHH-HHHHHhc--CceEEEEeccHHHHHHhhheeEEEeccceeeccc
Confidence 999888777755 6666775 789999999999886 677777788888887765
No 307
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=4.3e-15 Score=157.06 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=101.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--h--hhcc-----------------------ccccCCccc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--L--AQIG-----------------------CFVPCDSAT 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--l--aq~g-----------------------~~vpa~~~~ 591 (813)
..+.++++|++.+|++++|+||||||||||+|+++++.- . ...| .++|....-
T Consensus 16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14266 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP 95 (250)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCcc
Confidence 457889999999999999999999999999999976521 0 0111 223322110
Q ss_pred h--hHHHH----------------------HHHhcCCch----hHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCC
Q psy5289 592 I--SVVDQ----------------------IFTRVGAAD----SQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGR 642 (813)
Q Consensus 592 ~--~~~d~----------------------i~~~~~~~d----~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~ 642 (813)
+ ++.+. ++..+++.+ ........+|+++++...+++ .+.+|+++|||||++
T Consensus 96 ~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~ 175 (250)
T PRK14266 96 FPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCS 175 (250)
T ss_pred CcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 0 11111 122233221 123344567777776655555 468999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEE
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~ 695 (813)
|+|+.....+.. ++..+.+ +.++|++||+.+.. ..++++..+.+|++...
T Consensus 176 gLD~~~~~~l~~-~l~~~~~--~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~ 226 (250)
T PRK14266 176 ALDPISTTKIED-LIHKLKE--DYTIVIVTHNMQQATRVSKYTSFFLNGEIIES 226 (250)
T ss_pred cCCHHHHHHHHH-HHHHHhc--CCeEEEEECCHHHHHhhcCEEEEEECCeEEEe
Confidence 999987777644 4445543 78999999997654 45666556777777644
No 308
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.61 E-value=2.4e-15 Score=159.65 Aligned_cols=153 Identities=10% Similarity=-0.002 Sum_probs=100.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCccch--hH--
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSATI--SV-- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~~~--~~-- 594 (813)
..+.++++|++.+|++++|+||||||||||+|++++.... ...-.++|....-+ ++
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~ 113 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRF 113 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHH
Confidence 3578899999999999999999999999999999754210 00112233221100 00
Q ss_pred ------------HHHHHHhcCCchhH-----------hhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHH
Q psy5289 595 ------------VDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 595 ------------~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
+...+...++.+.+ ......+++++++...+++ .+.+|+++|||||++|+|+....
T Consensus 114 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~ 193 (257)
T cd03288 114 NLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193 (257)
T ss_pred hcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 11122223332211 1223467777776655555 46899999999999999998765
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEE
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~ 694 (813)
.+ ..++..+. .++++|++||+++....++++..+.+|++..
T Consensus 194 ~l-~~~l~~~~--~~~tiii~sh~~~~~~~~dri~~l~~G~i~~ 234 (257)
T cd03288 194 IL-QKVVMTAF--ADRTVVTIAHRVSTILDADLVLVLSRGILVE 234 (257)
T ss_pred HH-HHHHHHhc--CCCEEEEEecChHHHHhCCEEEEEECCEEEE
Confidence 55 44444443 3789999999988877777777777776643
No 309
>PRK13409 putative ATPase RIL; Provisional
Probab=99.61 E-value=3.5e-15 Score=175.24 Aligned_cols=147 Identities=14% Similarity=0.070 Sum_probs=106.8
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-------hccccccCCcc---chh----------------
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------QIGCFVPCDSA---TIS---------------- 593 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-------q~g~~vpa~~~---~~~---------------- 593 (813)
+..++++|++..|++++|+||||||||||+|+++++.... ..-.++|.... ..+
T Consensus 353 ~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~ 432 (590)
T PRK13409 353 FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSY 432 (590)
T ss_pred EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHH
Confidence 4467889999999999999999999999999997643110 00123333211 111
Q ss_pred HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q psy5289 594 VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFAT 672 (813)
Q Consensus 594 ~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~T 672 (813)
....++.++++.+......+++|++++|...+++. +.+|+++||||||+|+|+.....+.. +++.+.++.|.++|++|
T Consensus 433 ~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tviivs 511 (590)
T PRK13409 433 YKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAK-AIRRIAEEREATALVVD 511 (590)
T ss_pred HHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHhCCCEEEEEe
Confidence 12456777888777788889999888887666655 68999999999999999988877755 55555543589999999
Q ss_pred CChHHHh-hcCCCCce
Q psy5289 673 HFHEIAL-LSRVIPTF 687 (813)
Q Consensus 673 H~~el~~-~~~~~~~v 687 (813)
||.+++. +++++..+
T Consensus 512 HD~~~~~~~aDrvivl 527 (590)
T PRK13409 512 HDIYMIDYISDRLMVF 527 (590)
T ss_pred CCHHHHHHhCCEEEEE
Confidence 9987664 67765433
No 310
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.61 E-value=2.5e-15 Score=192.55 Aligned_cols=155 Identities=13% Similarity=0.161 Sum_probs=118.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc---chh--
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA---TIS-- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~---~~~-- 593 (813)
..+.++++|++.+|++++|+|||||||||+||+++++... .++| ++|.... .++
T Consensus 943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG-~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG-MCPQHNILFHHLTVA 1021 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE-EEecCCcCCCCCCHH
Confidence 4688999999999999999999999999999999755211 1122 3443321 111
Q ss_pred -------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHH
Q psy5289 594 -------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMA 653 (813)
Q Consensus 594 -------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~ 653 (813)
.++.++.++|+.+......+++|+||+|...++++ +.+|+++|||||++|+|+.....+
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l- 1100 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI- 1100 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH-
Confidence 12345677787777777788999999887766655 689999999999999999887777
Q ss_pred HHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEEE
Q psy5289 654 CSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 654 ~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~~ 697 (813)
+.+++.+. .|.++|++||+++.+. +++++..+.+|++.+.++
T Consensus 1101 ~~lL~~l~--~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs 1143 (2272)
T TIGR01257 1101 WDLLLKYR--SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143 (2272)
T ss_pred HHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecC
Confidence 55666664 3889999999987765 789888899999887654
No 311
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.61 E-value=4.1e-15 Score=157.12 Aligned_cols=143 Identities=17% Similarity=0.161 Sum_probs=99.7
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--hc--------------c-----------------cccc
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--QI--------------G-----------------CFVP 586 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--q~--------------g-----------------~~vp 586 (813)
.+.+++++ +.+|++++|+||||||||||||+++++.... ++ | .++|
T Consensus 15 ~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 15 FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 35667874 7889999999999999999999996542110 00 1 0111
Q ss_pred CCccc------------------hhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChh
Q psy5289 587 CDSAT------------------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTF 647 (813)
Q Consensus 587 a~~~~------------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~ 647 (813)
..... -.....++.++|+.+.......++++++++...+.+. +.+|+++|+|||++|+|+.
T Consensus 94 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~ 173 (255)
T cd03236 94 QYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK 173 (255)
T ss_pred chhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 10000 0112345667777776777778888888776666554 5899999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCC
Q psy5289 648 DGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIP 685 (813)
Q Consensus 648 d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~ 685 (813)
....+.+ +++.+.+ .++++|++||+.+... +++++.
T Consensus 174 ~~~~l~~-~l~~l~~-~~~tIIiiSHd~~~~~~~ad~i~ 210 (255)
T cd03236 174 QRLNAAR-LIRELAE-DDNYVLVVEHDLAVLDYLSDYIH 210 (255)
T ss_pred HHHHHHH-HHHHHHh-cCCEEEEEECCHHHHHHhCCEEE
Confidence 8777755 5555665 4899999999987765 676543
No 312
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.61 E-value=2.5e-15 Score=155.41 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=120.9
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------------------hhccccccCCc
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------------------AQIGCFVPCDS 589 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------------------aq~g~~vpa~~ 589 (813)
-.++++|++.+|++.+|.|-+|||||||+|++..+.-. .|.-...|-..
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 36799999999999999999999999999998432110 01101112110
Q ss_pred ----c-------------chhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q psy5289 590 ----A-------------TISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFG 651 (813)
Q Consensus 590 ----~-------------~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~ 651 (813)
. +-......+..+|+.+.-......+|++|+|..-+.++ +++|+++|+|||++.+||.=+..
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~ 202 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTE 202 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHH
Confidence 0 01112346778899888888899999999998776665 68999999999999999998888
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEECCeEE
Q psy5289 652 MACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQEDNLV 702 (813)
Q Consensus 652 i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~~~~i~ 702 (813)
+-..+++ |..+.+.|++|+|||.+.+ ++.+++..+++|++.-.+.+++|.
T Consensus 203 mQdeLl~-Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 203 MQDELLE-LQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred HHHHHHH-HHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHH
Confidence 7666665 4444789999999997655 688888889999988777766653
No 313
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.3e-14 Score=140.45 Aligned_cols=144 Identities=20% Similarity=0.156 Sum_probs=106.9
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhc----c-cc----------ccCCccchhH----------
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQI----G-CF----------VPCDSATISV---------- 594 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~----g-~~----------vpa~~~~~~~---------- 594 (813)
.+..|+++++.+|+++++.||+||||||+|+.+|+++..++. + -. |-...+-+++
T Consensus 19 ~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafg 98 (259)
T COG4525 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFG 98 (259)
T ss_pred hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHH
Confidence 467799999999999999999999999999999887654321 1 11 1111121221
Q ss_pred --------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q psy5289 595 --------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARE 659 (813)
Q Consensus 595 --------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~ 659 (813)
.++.+..+|+.+.-.+.+-.+|++|+|..-+.+. +.+|.+++||||+..+|...+..+-.-+++.
T Consensus 99 L~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldl 178 (259)
T COG4525 99 LQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDL 178 (259)
T ss_pred HHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHH
Confidence 2345666777776677777889999998887776 5899999999999999998888775555555
Q ss_pred HHhcCCCEEEEEcCChHHHh-hcCCC
Q psy5289 660 LASHRQPFTLFATHFHEIAL-LSRVI 684 (813)
Q Consensus 660 l~~~~~~~~l~~TH~~el~~-~~~~~ 684 (813)
... .|..++++||+.|.+- ++++.
T Consensus 179 w~~-tgk~~lliTH~ieEAlflatrL 203 (259)
T COG4525 179 WQE-TGKQVLLITHDIEEALFLATRL 203 (259)
T ss_pred HHH-hCCeEEEEeccHHHHHhhhhee
Confidence 454 7999999999977665 45544
No 314
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.59 E-value=4.2e-15 Score=174.75 Aligned_cols=147 Identities=12% Similarity=0.043 Sum_probs=99.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------hhccccccCCcc---chhHHHH--------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------AQIGCFVPCDSA---TISVVDQ-------- 597 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----------aq~g~~vpa~~~---~~~~~d~-------- 597 (813)
..+.++++|++.+|++++|+||||||||||||+|+++... .++ .++|.... .+++.+.
T Consensus 20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i-~~v~Q~~~~~~~~tv~e~l~~~~~~~ 98 (556)
T PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKV-GYLPQEPQLDPEKTVRENVEEGVAEV 98 (556)
T ss_pred CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEE-EEEecCCCCCCCCcHHHHHHHhhHHH
Confidence 4578899999999999999999999999999999765321 112 23443321 1122221
Q ss_pred -------------------------------------------------HHHhcCCchhHhhccchhHHHHHHHHHHHHh
Q psy5289 598 -------------------------------------------------IFTRVGAADSQYRGISTFMMEMKETATVIKK 628 (813)
Q Consensus 598 -------------------------------------------------i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~ 628 (813)
++.++|+. ......+++|+++++...+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~LSgGqkqrv~la~a 177 (556)
T PRK11819 99 KAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTKLSGGERRRVALCRL 177 (556)
T ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhhcCHHHHHHHHHHHH
Confidence 12222332 1344567889888877666665
Q ss_pred -CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEE
Q psy5289 629 -CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQV 692 (813)
Q Consensus 629 -~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~ 692 (813)
+.+|+++|||||++|+|+.....+ .+.+.+ .+.++|++||+.++.. +++++..+.+|++
T Consensus 178 l~~~p~vlLLDEPt~~LD~~~~~~l----~~~L~~-~~~tviiisHd~~~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 178 LLEKPDMLLLDEPTNHLDAESVAWL----EQFLHD-YPGTVVAVTHDRYFLDNVAGWILELDRGRG 238 (556)
T ss_pred HhCCCCEEEEcCCCCcCChHHHHHH----HHHHHh-CCCeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence 689999999999999999765544 333443 3458999999987664 6777666666554
No 315
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.59 E-value=6.6e-15 Score=174.09 Aligned_cols=172 Identities=11% Similarity=0.060 Sum_probs=117.8
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hh
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LA 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------la 579 (813)
+.+.+++...-+-. +..++.+|+++++++|+.++|+|+||||||||+|.+.++-. +.
T Consensus 470 g~I~~~nvsf~y~~---~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR 546 (709)
T COG2274 470 GEIEFENVSFRYGP---DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLR 546 (709)
T ss_pred ceEEEEEEEEEeCC---CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHH
Confidence 46777776543322 23479999999999999999999999999999999854311 11
Q ss_pred hccccccCCccc--hhHH------------HHH---HHhcCCchhH-----------hhccchhHHHHHHHHHHHHh-CC
Q psy5289 580 QIGCFVPCDSAT--ISVV------------DQI---FTRVGAADSQ-----------YRGISTFMMEMKETATVIKK-CT 630 (813)
Q Consensus 580 q~g~~vpa~~~~--~~~~------------d~i---~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~~-~~ 630 (813)
+.-.+||.+..- -++. +++ ...-|+.+.+ ..+-+.+|+|++|+..++++ ..
T Consensus 547 ~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~ 626 (709)
T COG2274 547 RQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS 626 (709)
T ss_pred hheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence 222345544320 0111 111 1222333333 34456678888887777766 59
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEE
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~ 697 (813)
+|+++||||||+++|+..-..+...+.+ +. .|+|+|++||.+...+.+|++..++.|++...+.
T Consensus 627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~-~~--~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs 690 (709)
T COG2274 627 KPKILLLDEATSALDPETEAIILQNLLQ-IL--QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGS 690 (709)
T ss_pred CCCEEEEeCcccccCHhHHHHHHHHHHH-Hh--cCCeEEEEEccchHhhhccEEEEccCCceeccCC
Confidence 9999999999999999775555444333 33 3799999999999999999988888888765443
No 316
>PLN03073 ABC transporter F family; Provisional
Probab=99.59 E-value=4.9e-14 Score=168.59 Aligned_cols=149 Identities=14% Similarity=0.081 Sum_probs=105.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----------hccccccCCcc---c--------------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----------QIGCFVPCDSA---T-------------- 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----------q~g~~vpa~~~---~-------------- 591 (813)
..+.++++|++..|++++|+||||||||||||+++++.... .+| ++|.... .
T Consensus 522 ~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~ig-yv~Q~~~~~l~~~~~~~~~~~~~~~ 600 (718)
T PLN03073 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMA-VFSQHHVDGLDLSSNPLLYMMRCFP 600 (718)
T ss_pred CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEE-EEeccccccCCcchhHHHHHHHhcC
Confidence 35889999999999999999999999999999997653211 111 2222110 0
Q ss_pred ---hhHHHHHHHhcCCch-hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCC
Q psy5289 592 ---ISVVDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQP 666 (813)
Q Consensus 592 ---~~~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~ 666 (813)
-..+..++.++|..+ ......+.+|+++++...+++. +.+|+++||||||+|+|+.....+ ++.+.+ .+.
T Consensus 601 ~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l----~~~L~~-~~g 675 (718)
T PLN03073 601 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEAL----IQGLVL-FQG 675 (718)
T ss_pred CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH----HHHHHH-cCC
Confidence 011234566777764 4566778999888887666654 689999999999999999765544 444444 235
Q ss_pred EEEEEcCChHHHh-hcCCCCceEeeEEE
Q psy5289 667 FTLFATHFHEIAL-LSRVIPTFRNVQVS 693 (813)
Q Consensus 667 ~~l~~TH~~el~~-~~~~~~~v~~~~~~ 693 (813)
++|++|||.++.. +++++..+.+|++.
T Consensus 676 tvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 676 GVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred EEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9999999977665 67777666666553
No 317
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.59 E-value=8.1e-15 Score=174.81 Aligned_cols=148 Identities=14% Similarity=0.073 Sum_probs=102.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------h---hccccccCCcc----chhHH---------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------A---QIGCFVPCDSA----TISVV--------- 595 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------a---q~g~~vpa~~~----~~~~~--------- 595 (813)
..+.++++|++..|++++|+||||||||||||++++.... . .+| |+|.... ..++.
T Consensus 332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~-y~~q~~~~l~~~~tv~e~l~~~~~~ 410 (635)
T PRK11147 332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVA-YFDQHRAELDPEKTVMDNLAEGKQE 410 (635)
T ss_pred eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEE-EEeCcccccCCCCCHHHHHHhhccc
Confidence 4688999999999999999999999999999999754211 1 112 2332210 11111
Q ss_pred ----------HHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q psy5289 596 ----------DQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASH 663 (813)
Q Consensus 596 ----------d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~ 663 (813)
..++.+++.. +......+++|+++++...+++. +.+|.++||||||+|+|+.....+ .+.+.+
T Consensus 411 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l----~~~l~~- 485 (635)
T PRK11147 411 VMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELL----EELLDS- 485 (635)
T ss_pred ccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH----HHHHHh-
Confidence 2334455653 45666778899998887766665 589999999999999999765444 333443
Q ss_pred CCCEEEEEcCChHHH-hhcCCCCceE-eeEE
Q psy5289 664 RQPFTLFATHFHEIA-LLSRVIPTFR-NVQV 692 (813)
Q Consensus 664 ~~~~~l~~TH~~el~-~~~~~~~~v~-~~~~ 692 (813)
.+.++|++|||.++. .+++++..+. +|++
T Consensus 486 ~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i 516 (635)
T PRK11147 486 YQGTVLLVSHDRQFVDNTVTECWIFEGNGKI 516 (635)
T ss_pred CCCeEEEEECCHHHHHHhcCEEEEEeCCCeE
Confidence 356999999997665 5777665554 4443
No 318
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.59 E-value=5.6e-15 Score=150.10 Aligned_cols=134 Identities=14% Similarity=0.128 Sum_probs=89.5
Q ss_pred cccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh---------------------------hccccccCCccc----
Q psy5289 543 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA---------------------------QIGCFVPCDSAT---- 591 (813)
Q Consensus 543 n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la---------------------------q~g~~vpa~~~~---- 591 (813)
.+++++..+| +++|+|||||||||++++++.+.... ++| +++.....
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~vfq~~~~~~~~ 91 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVT-LTFDNSDGRYSI 91 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEE-EEEEcCCCceeE
Confidence 4566777778 99999999999999999996543110 111 12211110
Q ss_pred --hhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcC
Q psy5289 592 --ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-----TENSLVIIDELGRGTSTFDGFGMACSIARELASHR 664 (813)
Q Consensus 592 --~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~-----~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~ 664 (813)
...++.++.. .+........+++++++...+.... .+|+++|+|||++|+|+.....+.. +++.+.+
T Consensus 92 ~~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~-~l~~~~~-- 165 (197)
T cd03278 92 ISQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR-LLKEFSK-- 165 (197)
T ss_pred EehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcc--
Confidence 1123444544 2333455677888888876665542 5679999999999999987776644 5555543
Q ss_pred CCEEEEEcCChHHHhhcCCC
Q psy5289 665 QPFTLFATHFHEIALLSRVI 684 (813)
Q Consensus 665 ~~~~l~~TH~~el~~~~~~~ 684 (813)
+.++|++||+++....++++
T Consensus 166 ~~tiIiitH~~~~~~~~d~v 185 (197)
T cd03278 166 ETQFIVITHRKGTMEAADRL 185 (197)
T ss_pred CCEEEEEECCHHHHhhcceE
Confidence 68899999999887766654
No 319
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.58 E-value=6.4e-15 Score=165.78 Aligned_cols=157 Identities=17% Similarity=0.119 Sum_probs=118.6
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----------------------------hccccccCCcc-
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----------------------------QIGCFVPCDSA- 590 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----------------------------q~g~~vpa~~~- 590 (813)
.+.+|++|++.+|++++|+|.+||||||+.+++..+.... ..-+++|.+..
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~ 102 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT 102 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence 5788999999999999999999999999999984321100 00012222211
Q ss_pred ------ch--------------------hHHHHHHHhcCCchhHhh--ccchhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q psy5289 591 ------TI--------------------SVVDQIFTRVGAADSQYR--GISTFMMEMKETATVIKK-CTENSLVIIDELG 641 (813)
Q Consensus 591 ------~~--------------------~~~d~i~~~~~~~d~~~~--~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~ 641 (813)
++ ....+++.++|+.+.... -...||++|+|.+.|+++ +.+|+|+|+||||
T Consensus 103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPT 182 (539)
T COG1123 103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT 182 (539)
T ss_pred hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCc
Confidence 00 012346778888777665 678899999998887765 6899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEEE
Q psy5289 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 642 ~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~~ 697 (813)
.++|+.-...|.. +++.+.++.|.++||+|||+++.. ++|++..+.+|.+.....
T Consensus 183 TaLDvt~q~qIL~-llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 183 TALDVTTQAQILD-LLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred cccCHHHHHHHHH-HHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 9999988777765 455566558999999999998875 889999999999876654
No 320
>PLN03211 ABC transporter G-25; Provisional
Probab=99.58 E-value=5.4e-15 Score=175.78 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=111.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh------------------hccccccCCcc---chhH---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA------------------QIGCFVPCDSA---TISV--- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la------------------q~g~~vpa~~~---~~~~--- 594 (813)
..+.+++++++.+|++++|+|||||||||||+++++..... +.-++||.+.. ..++
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence 45788999999999999999999999999999997653110 01124443221 1111
Q ss_pred ---------------------HHHHHHhcCCchhHh-----hccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh
Q psy5289 595 ---------------------VDQIFTRVGAADSQY-----RGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTF 647 (813)
Q Consensus 595 ---------------------~d~i~~~~~~~d~~~-----~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~ 647 (813)
++.++..+|+.+... .....+|++++++..+++ .+.+|++++||||++|+|+.
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~ 240 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT 240 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHH
Confidence 233445555543221 123567777776655554 46899999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEEcCChH--HHhhcCCCCceEeeEEEEEEECC
Q psy5289 648 DGFGMACSIARELASHRQPFTLFATHFHE--IALLSRVIPTFRNVQVSALEQED 699 (813)
Q Consensus 648 d~~~i~~~i~~~l~~~~~~~~l~~TH~~e--l~~~~~~~~~v~~~~~~~~~~~~ 699 (813)
....+.. ++..+++ .|.|+|++||+++ +.+++|++..+.+|++...++.+
T Consensus 241 ~~~~l~~-~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~ 292 (659)
T PLN03211 241 AAYRLVL-TLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGS 292 (659)
T ss_pred HHHHHHH-HHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHH
Confidence 8777755 5556665 5899999999974 57889998888888887765543
No 321
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.58 E-value=4.1e-15 Score=151.35 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=122.2
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------hhhccccccCCccchh----------------
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------LAQIGCFVPCDSATIS---------------- 593 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------laq~g~~vpa~~~~~~---------------- 593 (813)
+++|..+...+++|.|++||||||++++|+++.- -+.-|.++|....+++
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 5566666557999999999999999999986532 2344556665443322
Q ss_pred ------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q psy5289 594 ------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIAREL 660 (813)
Q Consensus 594 ------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l 660 (813)
.+|++..-+|...-+.+-.+++|++.+|...|-++ .+.|.|++||||.+.+|..-..++. -.+|.|
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eil-pylERL 174 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREIL-PYLERL 174 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHH-HHHHHH
Confidence 36778888888888889999999888877777665 5999999999999999987777764 478888
Q ss_pred HhcCCCEEEEEcCC-hHHHhhcCCCCceEeeEEEEEEE
Q psy5289 661 ASHRQPFTLFATHF-HEIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 661 ~~~~~~~~l~~TH~-~el~~~~~~~~~v~~~~~~~~~~ 697 (813)
.++.+..++++||. .|++.+++++..+.||++.+...
T Consensus 175 ~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~ 212 (352)
T COG4148 175 RDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGP 212 (352)
T ss_pred HHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCc
Confidence 88789999999999 57888999999999999988754
No 322
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.58 E-value=1.9e-14 Score=169.04 Aligned_cols=171 Identities=18% Similarity=0.165 Sum_probs=113.0
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------h
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------A 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------a 579 (813)
+.+.+++....+- .+..++.++++|++++|+.++|+||||||||||+|.+++.... .
T Consensus 315 ~~i~~~~v~~~y~---~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 315 GHLSVENVTIVPP---GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred CeEEEEEEEEEcC---CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHh
Confidence 3577777654331 1224789999999999999999999999999999999654211 0
Q ss_pred hccccccCCccc--hhHHHHH---------------HHhcCCch-----------hHhhccchhHHHHHHHHHHHHh-CC
Q psy5289 580 QIGCFVPCDSAT--ISVVDQI---------------FTRVGAAD-----------SQYRGISTFMMEMKETATVIKK-CT 630 (813)
Q Consensus 580 q~g~~vpa~~~~--~~~~d~i---------------~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~~-~~ 630 (813)
+.-.++|.+..- -++.+.+ +...++.+ .+..+...+|++++|...+++. ..
T Consensus 392 ~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 392 KHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred hheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 111234443210 0111111 11122211 2223345677777776666655 68
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEE
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~ 695 (813)
+|+++||||||+|+|+.....+...+ ..+.. .++++|++||+.+....+|++..+.+|++...
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l-~~~~~-~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~ 534 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAI-KALKA-RGITVVVITHRPSLLGCVDKILVLQDGRIARF 534 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHH-HHHhh-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999998766665443 34443 47899999999988888888877888877543
No 323
>KOG0057|consensus
Probab=99.58 E-value=3.6e-14 Score=156.81 Aligned_cols=172 Identities=18% Similarity=0.100 Sum_probs=123.5
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhh-------------------hhhhh
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS-------------------VFLAQ 580 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~-------------------~~laq 580 (813)
+.|.+.+..--+. ++..|.++++|+++.|+-++|+|+|||||||+||++... --+.+
T Consensus 350 ~~I~F~dV~f~y~----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~ 425 (591)
T KOG0057|consen 350 GSIEFDDVHFSYG----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQ 425 (591)
T ss_pred CcEEEEeeEEEeC----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhh
Confidence 3477666533332 245699999999999999999999999999999998321 11344
Q ss_pred ccccccCCccch-----------------hHHHHHHHhcCCchhHhhcc---chh--------H-HHHHHHHHHHHhCCC
Q psy5289 581 IGCFVPCDSATI-----------------SVVDQIFTRVGAADSQYRGI---STF--------M-MEMKETATVIKKCTE 631 (813)
Q Consensus 581 ~g~~vpa~~~~~-----------------~~~d~i~~~~~~~d~~~~~~---s~f--------~-~e~~~~~~il~~~~~ 631 (813)
.-.+||++..-+ .-+-++..+.|..|.+.+-. +|. | +|+++++.+.+...+
T Consensus 426 ~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKd 505 (591)
T KOG0057|consen 426 SIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKD 505 (591)
T ss_pred heeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcC
Confidence 556788775311 11223556777777665432 222 3 455666666666799
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEEC
Q psy5289 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 632 ~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~ 698 (813)
++++++||||+.+|...-..+...+.. . ..+.|+|++-|++++..-+|++..+.||.|......
T Consensus 506 a~Il~~DEaTS~LD~~TE~~i~~~i~~-~--~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth 569 (591)
T KOG0057|consen 506 APILLLDEATSALDSETEREILDMIMD-V--MSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTH 569 (591)
T ss_pred CCeEEecCcccccchhhHHHHHHHHHH-h--cCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccH
Confidence 999999999999998776666665555 2 258899999999999999999999999999866553
No 324
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.58 E-value=8e-14 Score=163.99 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=100.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------h---hccccccCCc-c---chhH----------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------A---QIGCFVPCDS-A---TISV---------- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------a---q~g~~vpa~~-~---~~~~---------- 594 (813)
..+.++++|++.+|++++|+||||||||||+|+++++... . .+ .++|... . ..++
T Consensus 337 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i-~~v~q~~~~~~~~~tv~e~l~~~~~~ 415 (556)
T PRK11819 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKL-AYVDQSRDALDPNKTVWEEISGGLDI 415 (556)
T ss_pred eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEE-EEEeCchhhcCCCCCHHHHHHhhccc
Confidence 4689999999999999999999999999999999754311 1 11 2344321 0 1111
Q ss_pred ---------HHHHHHhcCCch-hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q psy5289 595 ---------VDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASH 663 (813)
Q Consensus 595 ---------~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~ 663 (813)
...++.+++..+ ......+++|+++++...+++. +.+|+++||||||+|+|+.....+.. ++..+
T Consensus 416 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~--- 491 (556)
T PRK11819 416 IKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEE-ALLEF--- 491 (556)
T ss_pred ccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH-HHHhC---
Confidence 123556677653 4566778999988887666665 68999999999999999987666543 33322
Q ss_pred CCCEEEEEcCChHHH-hhcCCCCceE
Q psy5289 664 RQPFTLFATHFHEIA-LLSRVIPTFR 688 (813)
Q Consensus 664 ~~~~~l~~TH~~el~-~~~~~~~~v~ 688 (813)
+.++|++|||.++. .+++++..+.
T Consensus 492 -~~tvi~vtHd~~~~~~~~d~i~~l~ 516 (556)
T PRK11819 492 -PGCAVVISHDRWFLDRIATHILAFE 516 (556)
T ss_pred -CCeEEEEECCHHHHHHhCCEEEEEE
Confidence 23799999998765 4677654444
No 325
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.58 E-value=8.2e-15 Score=174.75 Aligned_cols=147 Identities=14% Similarity=0.139 Sum_probs=97.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh-----cc----ccccCCc---cchhH------------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-----IG----CFVPCDS---ATISV------------ 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-----~g----~~vpa~~---~~~~~------------ 594 (813)
..+.++++|++.+|++++|+||||||||||||+|+++..... .| .++|... ....+
T Consensus 16 ~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~ 95 (635)
T PRK11147 16 APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQA 95 (635)
T ss_pred ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHH
Confidence 457889999999999999999999999999999976532110 00 0111110 00000
Q ss_pred -------------------------------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CC
Q psy5289 595 -------------------------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CT 630 (813)
Q Consensus 595 -------------------------------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~ 630 (813)
+..++..+|.. .....+++|+++++...+++. +.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~ 173 (635)
T PRK11147 96 EYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVS 173 (635)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhc
Confidence 11122333332 134567889888877666665 68
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEE
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQV 692 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~ 692 (813)
+|+|+||||||+|+|+..... +.+.|.+ .+.++|++|||.++. .+++++..+.+|++
T Consensus 174 ~P~lLLLDEPt~~LD~~~~~~----L~~~L~~-~~~tvlivsHd~~~l~~~~d~i~~L~~G~i 231 (635)
T PRK11147 174 NPDVLLLDEPTNHLDIETIEW----LEGFLKT-FQGSIIFISHDRSFIRNMATRIVDLDRGKL 231 (635)
T ss_pred CCCEEEEcCCCCccCHHHHHH----HHHHHHh-CCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 999999999999999876443 4444544 356999999997765 46777655555543
No 326
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.57 E-value=1.3e-14 Score=173.25 Aligned_cols=161 Identities=13% Similarity=0.147 Sum_probs=119.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------hhccccccCCcc---c
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------AQIGCFVPCDSA---T 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------aq~g~~vpa~~~---~ 591 (813)
..+.++++|++.+|++++|+||||||||||+|++++.... .+...++|.+.. .
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 3578899999999999999999999999999999754211 011123332221 0
Q ss_pred hhH---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 592 ISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 592 ~~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
.+. ...++..+|+.+.+......+++++++...+++. +.+|+++|+|||++|+|+...
T Consensus 101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~ 180 (648)
T PRK10535 101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180 (648)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 111 1234556677666677778899888877666665 689999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCeE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNL 701 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i 701 (813)
..+.. +++.+.+ .+.++|++||+.++...++++..+.+|++......++.
T Consensus 181 ~~l~~-ll~~l~~-~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 181 EEVMA-ILHQLRD-RGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred HHHHH-HHHHHHh-cCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCcccc
Confidence 76644 5566665 58999999999999888998888999999876655443
No 327
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3.7e-14 Score=159.05 Aligned_cols=158 Identities=16% Similarity=0.049 Sum_probs=107.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc----c---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA----T--- 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~----~--- 591 (813)
.++++|++|+..+|+.++|+|||||||||++..+++...- -+.-++||...- +
T Consensus 334 ~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTire 413 (559)
T COG4988 334 KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRE 413 (559)
T ss_pred CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHH
Confidence 4899999999999999999999999999999998643210 011123332211 0
Q ss_pred ----------hhHHHHHHHhcCCchh----------HhhccchhHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChhhHH
Q psy5289 592 ----------ISVVDQIFTRVGAADS----------QYRGISTFMMEMKE-TATVIKKCTENSLVIIDELGRGTSTFDGF 650 (813)
Q Consensus 592 ----------~~~~d~i~~~~~~~d~----------~~~~~s~f~~e~~~-~~~il~~~~~~~LlllDEp~~Gtd~~d~~ 650 (813)
-.-+.+...+.|+.+- +..+-+.+|++..| ++.+.....+++++|+||||+++|.....
T Consensus 414 Ni~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~ 493 (559)
T COG4988 414 NILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQ 493 (559)
T ss_pred HhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHH
Confidence 0111223344443333 33333456665555 44444456889999999999999997766
Q ss_pred HHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECC
Q psy5289 651 GMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQED 699 (813)
Q Consensus 651 ~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~ 699 (813)
.+.. .+..+.+ +.|+|++||..+...-+|++..+++|++......+
T Consensus 494 ~i~~-~l~~l~~--~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~ 539 (559)
T COG4988 494 IILQ-ALQELAK--QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHE 539 (559)
T ss_pred HHHH-HHHHHHh--CCeEEEEEcChHHHhcCCEEEEecCCceeccCCHH
Confidence 5544 4445555 58999999999999989999889999887665443
No 328
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.57 E-value=1.2e-14 Score=170.87 Aligned_cols=145 Identities=17% Similarity=0.152 Sum_probs=101.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------h---hccccccCCcc----chhH----------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------A---QIGCFVPCDSA----TISV---------- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------a---q~g~~vpa~~~----~~~~---------- 594 (813)
..+.++++|++..|++++|+||||||||||||+++++... . .+ .++|.... ..++
T Consensus 335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i-~~v~q~~~~~~~~~tv~e~l~~~~~~ 413 (552)
T TIGR03719 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKL-AYVDQSRDALDPNKTVWEEISGGLDI 413 (552)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEE-EEEeCCccccCCCCcHHHHHHhhccc
Confidence 4689999999999999999999999999999999654211 0 01 13333210 0111
Q ss_pred ---------HHHHHHhcCCch-hHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q psy5289 595 ---------VDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASH 663 (813)
Q Consensus 595 ---------~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~ 663 (813)
...++.+++..+ ......+++|+++++...+++. +.+|+++|||||++|+|+.....+.. ++..+
T Consensus 414 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~--- 489 (552)
T TIGR03719 414 IQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEE-ALLEF--- 489 (552)
T ss_pred cccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHC---
Confidence 124566677753 4566778999988887666655 68999999999999999987666543 33322
Q ss_pred CCCEEEEEcCChHHHh-hcCCCCceEe
Q psy5289 664 RQPFTLFATHFHEIAL-LSRVIPTFRN 689 (813)
Q Consensus 664 ~~~~~l~~TH~~el~~-~~~~~~~v~~ 689 (813)
+.++|++|||.++.. +++++..+.+
T Consensus 490 -~~~viivsHd~~~~~~~~d~i~~l~~ 515 (552)
T TIGR03719 490 -AGCAVVISHDRWFLDRIATHILAFEG 515 (552)
T ss_pred -CCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 247999999987654 6776544443
No 329
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.57 E-value=8.3e-15 Score=150.95 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=119.2
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccc-cccC-------CccchhHHHHHHHhcCCch-hHhh
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC-FVPC-------DSATISVVDQIFTRVGAAD-SQYR 610 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~-~vpa-------~~~~~~~~d~i~~~~~~~d-~~~~ 610 (813)
...++|+|++.+|++++|+|.+||||||+-|++..+.-.. .|. +.-. .......+..++..+|... .+.+
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~r 105 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYR 105 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhc
Confidence 5688999999999999999999999999999986543211 111 1100 1112234566888899765 5667
Q ss_pred ccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceE
Q psy5289 611 GISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFR 688 (813)
Q Consensus 611 ~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~ 688 (813)
....|+++.+|...|+++ +.+|+++++|||++.+|.--...+. .++..+.++.|.+.+|+|||...+. +++++..+.
T Consensus 106 yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIl-nLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy 184 (268)
T COG4608 106 YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQIL-NLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMY 184 (268)
T ss_pred CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHH-HHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEe
Confidence 788999999888777776 6899999999999998876555553 4677777767999999999998887 567777777
Q ss_pred eeEEEEEEECCeE
Q psy5289 689 NVQVSALEQEDNL 701 (813)
Q Consensus 689 ~~~~~~~~~~~~i 701 (813)
.|++......+++
T Consensus 185 ~G~iVE~g~~~~~ 197 (268)
T COG4608 185 LGKIVEIGPTEEV 197 (268)
T ss_pred cCceeEecCHHHH
Confidence 7777665554443
No 330
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.56 E-value=1.2e-14 Score=171.02 Aligned_cols=147 Identities=13% Similarity=0.069 Sum_probs=98.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh----------hccccccCCcc---chhHHHHH-------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----------QIGCFVPCDSA---TISVVDQI------- 598 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la----------q~g~~vpa~~~---~~~~~d~i------- 598 (813)
..+.++++|++.+|++++|+||||||||||||++++..... ++ .++|.... ..++.+.+
T Consensus 18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i-~~v~Q~~~~~~~~tv~e~i~~~~~~~ 96 (552)
T TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKV-GYLPQEPQLDPTKTVRENVEEGVAEI 96 (552)
T ss_pred CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEE-EEEeccCCCCCCCcHHHHHHHhhHHH
Confidence 45788999999999999999999999999999997653210 11 23443321 11222211
Q ss_pred --------------------------------------------------HHhcCCchhHhhccchhHHHHHHHHHHHHh
Q psy5289 599 --------------------------------------------------FTRVGAADSQYRGISTFMMEMKETATVIKK 628 (813)
Q Consensus 599 --------------------------------------------------~~~~~~~d~~~~~~s~f~~e~~~~~~il~~ 628 (813)
+..+|.. ......+++|+++++...+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~LSgGqkqrv~la~a 175 (552)
T TIGR03719 97 KDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVTKLSGGERRRVALCRL 175 (552)
T ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchhhcCHHHHHHHHHHHH
Confidence 1112221 1234567888888887666665
Q ss_pred -CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEE
Q psy5289 629 -CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQV 692 (813)
Q Consensus 629 -~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~ 692 (813)
+.+|+++|||||++|+|+.....+ .+.+.+ .+.++|++||+.++.. +++++..+.+|++
T Consensus 176 l~~~p~lLLLDEPt~~LD~~~~~~l----~~~L~~-~~~tvIiisHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 176 LLSKPDMLLLDEPTNHLDAESVAWL----EQHLQE-YPGTVVAVTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred HhcCCCEEEEcCCCCCCChHHHHHH----HHHHHh-CCCeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence 689999999999999999765544 333444 3469999999987664 6676655655543
No 331
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.56 E-value=1.4e-14 Score=158.79 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=120.3
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhh----------------------hhhcc------ccccCCc---
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF----------------------LAQIG------CFVPCDS--- 589 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~----------------------laq~g------~~vpa~~--- 589 (813)
..++|+|++..|++++|.|.|||||||||+++.++.- -..+| ..+|.-.
T Consensus 19 And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~E 98 (501)
T COG3845 19 ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAE 98 (501)
T ss_pred ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhh
Confidence 4668999999999999999999999999999854310 11122 1222110
Q ss_pred -----------cc------hhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChhhHHH
Q psy5289 590 -----------AT------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFG 651 (813)
Q Consensus 590 -----------~~------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~-~~~~LlllDEp~~Gtd~~d~~~ 651 (813)
.. -.-+..+..++|+.=+.....+.++.+++|...|++.+ .+++++||||||+-+.|.+...
T Consensus 99 NiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~ 178 (501)
T COG3845 99 NIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADE 178 (501)
T ss_pred hhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 00 01234566778887788888889999999999999875 8899999999999999999888
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCC-hHHHhhcCCCCceEeeEEEEEEE
Q psy5289 652 MACSIARELASHRQPFTLFATHF-HEIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 652 i~~~i~~~l~~~~~~~~l~~TH~-~el~~~~~~~~~v~~~~~~~~~~ 697 (813)
+.. +++.+.+ .|+++||+||- .|..+++|++..++.|++....+
T Consensus 179 lf~-~l~~l~~-~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 179 LFE-ILRRLAA-EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHH-HHHHHHH-CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 855 6677876 69999999997 57778999999999998876554
No 332
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.56 E-value=1.7e-14 Score=169.58 Aligned_cols=169 Identities=14% Similarity=0.068 Sum_probs=116.0
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hh
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQ 580 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq 580 (813)
.+++++...-+ .+..++.++++|++++|+.++|+||||||||||++.+++.... .+
T Consensus 322 ~i~~~~v~f~y----~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 397 (547)
T PRK10522 322 TLELRNVTFAY----QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRK 397 (547)
T ss_pred eEEEEEEEEEe----CCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhh
Confidence 46666543221 0224689999999999999999999999999999999653211 11
Q ss_pred ccccccCCccc-------------hhHHHHHHHhcCCchhHhhc-----cchhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q psy5289 581 IGCFVPCDSAT-------------ISVVDQIFTRVGAADSQYRG-----ISTFMMEMKETATVIKK-CTENSLVIIDELG 641 (813)
Q Consensus 581 ~g~~vpa~~~~-------------~~~~d~i~~~~~~~d~~~~~-----~s~f~~e~~~~~~il~~-~~~~~LlllDEp~ 641 (813)
.-.++|.+..- -..+...+.+++..+....+ -..+|++++|...+++. +.+|+++|+||||
T Consensus 398 ~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~t 477 (547)
T PRK10522 398 LFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWA 477 (547)
T ss_pred heEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 11234433210 01122345556655443221 24677777776665554 6899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEE
Q psy5289 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 642 ~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~ 694 (813)
+|+|+.....+...+.+.+.+ .++|+|++||+.+....+|++..+.+|++..
T Consensus 478 s~LD~~~~~~i~~~l~~~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 478 ADQDPHFRREFYQVLLPLLQE-MGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529 (547)
T ss_pred CCCCHHHHHHHHHHHHHHHHh-CCCEEEEEEechHHHHhCCEEEEEECCEEEE
Confidence 999998877776655555443 4789999999999888999888888888764
No 333
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.56 E-value=4.5e-14 Score=167.19 Aligned_cols=169 Identities=11% Similarity=0.041 Sum_probs=112.7
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hh
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQ 580 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq 580 (813)
.+.+++...-+ .....++.++++|++++|+.++|+||||||||||+|.+++..-. .+
T Consensus 330 ~i~~~~v~f~y---~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~ 406 (571)
T TIGR02203 330 DVEFRNVTFRY---PGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406 (571)
T ss_pred eEEEEEEEEEc---CCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHh
Confidence 46665543222 11235789999999999999999999999999999998644210 11
Q ss_pred ccccccCCcc------------------chhHHHHHHHhcCCchhHh-----------hccchhHHHHHHHHHHHH-hCC
Q psy5289 581 IGCFVPCDSA------------------TISVVDQIFTRVGAADSQY-----------RGISTFMMEMKETATVIK-KCT 630 (813)
Q Consensus 581 ~g~~vpa~~~------------------~~~~~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~-~~~ 630 (813)
.-+++|.+.. .-.-+...+...|+.+.+. .+-..+|++.+|+..+++ .+.
T Consensus 407 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~ 486 (571)
T TIGR02203 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486 (571)
T ss_pred hceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 1234444321 1111223344444443322 222457777766655555 468
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEE
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~ 695 (813)
+|+++||||||+++|+.....+...+. .+. .++|+|++||+.+....+|++..+.+|++...
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~L~-~~~--~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~ 548 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAALE-RLM--QGRTTLVIAHRLSTIEKADRIVVMDDGRIVER 548 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHH-HHh--CCCEEEEEehhhHHHHhCCEEEEEeCCEEEee
Confidence 999999999999999988777755443 333 37899999999999999998887877776543
No 334
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.56 E-value=8.4e-14 Score=168.37 Aligned_cols=170 Identities=12% Similarity=0.062 Sum_probs=114.7
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------h
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------A 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------a 579 (813)
+.|.+++...-+ ..+..++.++++|++++|+.++|+||||||||||+|.+++.... .
T Consensus 462 ~~I~~~~vsf~Y---~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr 538 (694)
T TIGR03375 462 GEIEFRNVSFAY---PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLR 538 (694)
T ss_pred ceEEEEEEEEEe---CCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHH
Confidence 346776654322 11235789999999999999999999999999999999643211 1
Q ss_pred hccccccCCccc-----------------hhHHHHHHHhcCCchhHh-----------hccchhHHHHHHHHHHHHh-CC
Q psy5289 580 QIGCFVPCDSAT-----------------ISVVDQIFTRVGAADSQY-----------RGISTFMMEMKETATVIKK-CT 630 (813)
Q Consensus 580 q~g~~vpa~~~~-----------------~~~~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~~-~~ 630 (813)
+.-.+||++..- -.-+.+.....++.+.+. .+-..+|++++|+..+++. +.
T Consensus 539 ~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~ 618 (694)
T TIGR03375 539 RNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR 618 (694)
T ss_pred hccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 122345544210 011112233344433322 2234677777776666654 68
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEE
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~ 695 (813)
+|+++||||||+++|+.....+...+ ..+. .++|+|++||.++....+|++..+.+|++...
T Consensus 619 ~p~iliLDE~Ts~LD~~te~~i~~~l-~~~~--~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~ 680 (694)
T TIGR03375 619 DPPILLLDEPTSAMDNRSEERFKDRL-KRWL--AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVAD 680 (694)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH-HHHh--CCCEEEEEecCHHHHHhCCEEEEEeCCEEEee
Confidence 99999999999999998877775544 3344 37999999999999999998888888777543
No 335
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.56 E-value=1.3e-13 Score=158.10 Aligned_cols=143 Identities=17% Similarity=0.156 Sum_probs=96.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh-hh------h---hccccccCCccc-----------------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV-FL------A---QIGCFVPCDSAT----------------- 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~-~l------a---q~g~~vpa~~~~----------------- 591 (813)
..+..+++|.+..|+.++|+||||+|||||||.++... .. . ++| |++.....
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~ig-yf~Q~~~~l~~~~t~~d~l~~~~~~ 413 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIG-YFDQHRDELDPDKTVLEELSEGFPD 413 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEE-EEEehhhhcCccCcHHHHHHhhCcc
Confidence 57899999999999999999999999999999984321 10 0 111 11111110
Q ss_pred --hhHHHHHHHhcCC-chhHhhccchhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCE
Q psy5289 592 --ISVVDQIFTRVGA-ADSQYRGISTFMMEMKET-ATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPF 667 (813)
Q Consensus 592 --~~~~d~i~~~~~~-~d~~~~~~s~f~~e~~~~-~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~ 667 (813)
...+...+.+++. .+...+...++|++.+.. ..+...+.+|.++||||||+-+|.... .++.+.|.+ ...+
T Consensus 414 ~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~----~aLe~aL~~-f~Gt 488 (530)
T COG0488 414 GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL----EALEEALLD-FEGT 488 (530)
T ss_pred ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHH----HHHHHHHHh-CCCe
Confidence 1223345667774 456667788898776654 444445689999999999777776543 334455555 5678
Q ss_pred EEEEcCChHHHh-hcCCCCce
Q psy5289 668 TLFATHFHEIAL-LSRVIPTF 687 (813)
Q Consensus 668 ~l~~TH~~el~~-~~~~~~~v 687 (813)
+|+||||..+.+ +++++..+
T Consensus 489 vl~VSHDr~Fl~~va~~i~~~ 509 (530)
T COG0488 489 VLLVSHDRYFLDRVATRIWLV 509 (530)
T ss_pred EEEEeCCHHHHHhhcceEEEE
Confidence 999999988876 55544333
No 336
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.55 E-value=8e-14 Score=168.34 Aligned_cols=169 Identities=14% Similarity=0.083 Sum_probs=114.5
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hh
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LA 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------la 579 (813)
+.+.+++...-+-. +..++.++++|++++|+.++|+||||||||||+|.+++... +.
T Consensus 450 ~~I~~~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 526 (686)
T TIGR03797 450 GAIEVDRVTFRYRP---DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVR 526 (686)
T ss_pred ceEEEEEEEEEcCC---CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHH
Confidence 35777765443311 23579999999999999999999999999999999964321 11
Q ss_pred hccccccCCccc----------------hhHHHHHHHhcCCchhHh-----------hccchhHHHHHHHHHHHHh-CCC
Q psy5289 580 QIGCFVPCDSAT----------------ISVVDQIFTRVGAADSQY-----------RGISTFMMEMKETATVIKK-CTE 631 (813)
Q Consensus 580 q~g~~vpa~~~~----------------~~~~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~~-~~~ 631 (813)
+.-++||.+..- -.-+.......++.+.+. .+-+.+|++++|...+++. ..+
T Consensus 527 ~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 527 RQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred hccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 122345544321 011122334444444332 2234577777776666654 689
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEE
Q psy5289 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 632 ~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~ 696 (813)
|+++||||||+++|+.....+.. .+.+ .++|+|++||..+....+|++..+.+|++...+
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~----~L~~-~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSE----SLER-LKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQG 666 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHH----HHHH-hCCeEEEEecChHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999977555543 4444 368999999999999999998888888876443
No 337
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.55 E-value=8.9e-14 Score=165.07 Aligned_cols=166 Identities=16% Similarity=0.111 Sum_probs=111.1
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hh
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQ 580 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq 580 (813)
.+.+++....+- +..++.+++++++.+|+.++|+||||||||||+|.+++.... .+
T Consensus 334 ~I~~~~vsf~y~----~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 409 (588)
T PRK13657 334 AVEFDDVSFSYD----NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRR 409 (588)
T ss_pred eEEEEEEEEEeC----CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHh
Confidence 467766544331 124689999999999999999999999999999999644211 11
Q ss_pred ccccccCCccch--hH---------------HHHHHHhcCCchh-----------HhhccchhHHHHHHHHHHHH-hCCC
Q psy5289 581 IGCFVPCDSATI--SV---------------VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIK-KCTE 631 (813)
Q Consensus 581 ~g~~vpa~~~~~--~~---------------~d~i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~-~~~~ 631 (813)
.-+++|.+..-+ ++ +...+.+.++.+. +..+-..+|++.+|...+++ .+.+
T Consensus 410 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 410 NIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred heEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 223455443100 11 1112233333222 22233457777666655554 4689
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 632 ~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
|+++||||||+++|+.....+...+. .+. .++|+|++||+.+....+|++..+.+|++.
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~-~~~--~~~tvIiitHr~~~~~~~D~ii~l~~G~i~ 548 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALD-ELM--KGRTTFIIAHRLSTVRNADRILVFDNGRVV 548 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHH-HHh--cCCEEEEEEecHHHHHhCCEEEEEECCEEE
Confidence 99999999999999988777655443 333 378999999999999989988878777765
No 338
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.55 E-value=1e-13 Score=163.78 Aligned_cols=171 Identities=15% Similarity=0.040 Sum_probs=116.5
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------h
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------A 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------a 579 (813)
+.+.+++...-+- .+..++.++++|++++|+.++|+||||||||||+|.++..... .
T Consensus 337 ~~i~~~~v~f~y~---~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r 413 (574)
T PRK11160 337 VSLTLNNVSFTYP---DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALR 413 (574)
T ss_pred CeEEEEEEEEECC---CCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHH
Confidence 3466666543221 1224689999999999999999999999999999999643210 1
Q ss_pred hccccccCCccc-----------------hhHHHHHHHhcCCchhHhh----------ccchhHHHHHHHHHHHHh-CCC
Q psy5289 580 QIGCFVPCDSAT-----------------ISVVDQIFTRVGAADSQYR----------GISTFMMEMKETATVIKK-CTE 631 (813)
Q Consensus 580 q~g~~vpa~~~~-----------------~~~~d~i~~~~~~~d~~~~----------~~s~f~~e~~~~~~il~~-~~~ 631 (813)
+.-+++|.+..- -.-+...+...++.+.+.. +-..+|++++|...+++. +.+
T Consensus 414 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~ 493 (574)
T PRK11160 414 QAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493 (574)
T ss_pred hheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 112345544210 0112234455566555443 334577777776666554 689
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEE
Q psy5289 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 632 ~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~ 696 (813)
|+++||||||+++|+.....+...+.+ +. .++|+|++||.++....+|++..+.+|++...+
T Consensus 494 ~~ililDE~ts~lD~~t~~~i~~~l~~-~~--~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 494 APLLLLDEPTEGLDAETERQILELLAE-HA--QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555 (574)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHH-Hc--CCCEEEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence 999999999999999887766554433 33 378999999999888888888778887776443
No 339
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.55 E-value=1.3e-13 Score=163.85 Aligned_cols=169 Identities=14% Similarity=0.105 Sum_probs=113.4
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------h
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------A 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------a 579 (813)
+.+++++....+- +..++.++++|++++|+.++|+||||||||||+|.+++.... .
T Consensus 339 ~~i~~~~v~f~y~----~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~ 414 (592)
T PRK10790 339 GRIDIDNVSFAYR----DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLR 414 (592)
T ss_pred CeEEEEEEEEEeC----CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHH
Confidence 3467766544321 124689999999999999999999999999999999643211 1
Q ss_pred hccccccCCccch--h--------------HHHHHHHhcCCchhHh-----------hccchhHHHHHHHHHHHH-hCCC
Q psy5289 580 QIGCFVPCDSATI--S--------------VVDQIFTRVGAADSQY-----------RGISTFMMEMKETATVIK-KCTE 631 (813)
Q Consensus 580 q~g~~vpa~~~~~--~--------------~~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~-~~~~ 631 (813)
+.-+++|++..-+ + -+.+.....|+.+.+. .+-..+|++.+|...+++ .+.+
T Consensus 415 ~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~ 494 (592)
T PRK10790 415 QGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQT 494 (592)
T ss_pred hheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 1223455543211 1 1122344445444332 122347776666555555 4689
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEE
Q psy5289 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 632 ~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~ 695 (813)
|+++||||||+++|+.....+...+. .+. .++|+|++||..+....+|++..+.+|++...
T Consensus 495 ~~illlDEpts~LD~~t~~~i~~~l~-~~~--~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~ 555 (592)
T PRK10790 495 PQILILDEATANIDSGTEQAIQQALA-AVR--EHTTLVVIAHRLSTIVEADTILVLHRGQAVEQ 555 (592)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHH-HHh--CCCEEEEEecchHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999987666655443 333 36899999999988888998877777777643
No 340
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.55 E-value=9.4e-14 Score=164.63 Aligned_cols=171 Identities=15% Similarity=0.072 Sum_probs=112.2
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--------------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------------------- 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-------------------- 579 (813)
+.+.+++....+-+ .+..++.++++|++++|+.++|+||||||||||+|.+++.....
T Consensus 336 ~~i~~~~v~f~y~~--~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 336 GEIEFEQVNFAYPA--RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred ceEEEEEEEEECCC--CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHH
Confidence 35777765443311 11257899999999999999999999999999999986542110
Q ss_pred hccccccCCccc--hhH---------------HHHHHHhcCCchh-----------HhhccchhHHHHHHHHHHHH-hCC
Q psy5289 580 QIGCFVPCDSAT--ISV---------------VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIK-KCT 630 (813)
Q Consensus 580 q~g~~vpa~~~~--~~~---------------~d~i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~-~~~ 630 (813)
+.-+++|.+..- -++ +...+...++.+. +..+...+|++.+|...+++ .+.
T Consensus 414 ~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~ 493 (576)
T TIGR02204 414 ARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK 493 (576)
T ss_pred HhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 112345544310 011 1122233333222 22334457776666555554 468
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEE
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~ 695 (813)
+|+++|+||||+++|+.....+.. .+..+. .++++|++||+.+....+|++..+.+|++...
T Consensus 494 ~~~ililDEpts~lD~~~~~~i~~-~l~~~~--~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~ 555 (576)
T TIGR02204 494 DAPILLLDEATSALDAESEQLVQQ-ALETLM--KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQ 555 (576)
T ss_pred CCCeEEEeCcccccCHHHHHHHHH-HHHHHh--CCCEEEEEecchHHHHhCCEEEEEECCEEEee
Confidence 999999999999999987655544 333443 37899999999999888998888888877644
No 341
>PRK13409 putative ATPase RIL; Provisional
Probab=99.55 E-value=2.6e-14 Score=167.93 Aligned_cols=145 Identities=17% Similarity=0.183 Sum_probs=104.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--h--------------cc-----------------ccc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--Q--------------IG-----------------CFV 585 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--q--------------~g-----------------~~v 585 (813)
.|+.++++ .+.+|++++|+|||||||||+||++++..... . -| .+.
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 165 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK 165 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeec
Confidence 47899998 78999999999999999999999996542100 0 00 011
Q ss_pred cCCcc--------c----------hhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCh
Q psy5289 586 PCDSA--------T----------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTST 646 (813)
Q Consensus 586 pa~~~--------~----------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~ 646 (813)
|.... + ...++.++..+++.+......+++|+++++...+++. +.+|+++|||||++|+|+
T Consensus 166 ~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~ 245 (590)
T PRK13409 166 PQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI 245 (590)
T ss_pred ccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 11000 0 0112446667788777778889999988887766665 589999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCce
Q psy5289 647 FDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTF 687 (813)
Q Consensus 647 ~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v 687 (813)
.....+.. ++..+.+ |.++|++||+.+.. .+++++..+
T Consensus 246 ~~~~~l~~-~i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl 284 (590)
T PRK13409 246 RQRLNVAR-LIRELAE--GKYVLVVEHDLAVLDYLADNVHIA 284 (590)
T ss_pred HHHHHHHH-HHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 88777755 5556664 88999999997665 466665433
No 342
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.54 E-value=4.5e-14 Score=166.10 Aligned_cols=154 Identities=12% Similarity=0.105 Sum_probs=110.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------------hhccccccCCcc-------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------------------AQIGCFVPCDSA------- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------------------aq~g~~vpa~~~------- 590 (813)
.++.++++|++++|++++|+|||||||||+++.++..... .++ .++|.+..
T Consensus 355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i-~~v~q~~~lf~~ti~ 433 (555)
T TIGR01194 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLF-SAIFADFHLFDDLIG 433 (555)
T ss_pred CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhC-cEEccChhhhhhhhh
Confidence 3689999999999999999999999999999999643211 111 23333211
Q ss_pred -------chhHHHHHHHhcCCchhHhh---c---cchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHH
Q psy5289 591 -------TISVVDQIFTRVGAADSQYR---G---ISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSI 656 (813)
Q Consensus 591 -------~~~~~d~i~~~~~~~d~~~~---~---~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i 656 (813)
.-..+...+...++.+.+.. | ...+|++++|+..+++. +.+|+++|+||||+|+|+.....+...+
T Consensus 434 ~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 434 PDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred cccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 00112234555665554322 2 24677777776555554 6899999999999999998877776666
Q ss_pred HHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEE
Q psy5289 657 ARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 657 ~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~ 694 (813)
++.+.. .+.|+|++||+.+....+|++..+.+|++..
T Consensus 514 ~~~~~~-~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 514 LPDLKR-QGKTIIIISHDDQYFELADQIIKLAAGCIVK 550 (555)
T ss_pred HHHHHh-CCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 655544 4899999999998888899888888887753
No 343
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.54 E-value=2.2e-14 Score=157.15 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=76.9
Q ss_pred HHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCCh
Q psy5289 597 QIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFH 675 (813)
Q Consensus 597 ~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~ 675 (813)
.++..+++.+...+..+++|++++|...+++. +.+|+++|||||++|+|+.....+.. ++..+.++.|.++|++||+.
T Consensus 83 ~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~-~l~~l~~~~g~tiiivTHd~ 161 (325)
T TIGR01187 83 EALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQL-ELKTIQEQLGITFVFVTHDQ 161 (325)
T ss_pred HHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCH
Confidence 35566677666667778899888887666665 68999999999999999988777744 45555543589999999997
Q ss_pred HH-HhhcCCCCceEeeEEEEEEE
Q psy5289 676 EI-ALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 676 el-~~~~~~~~~v~~~~~~~~~~ 697 (813)
+. ..+++++..+.+|++....+
T Consensus 162 ~e~~~~~d~i~vl~~G~i~~~g~ 184 (325)
T TIGR01187 162 EEAMTMSDRIAIMRKGKIAQIGT 184 (325)
T ss_pred HHHHHhCCEEEEEECCEEEEEcC
Confidence 65 56889888889998865543
No 344
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.54 E-value=1.6e-13 Score=162.07 Aligned_cols=153 Identities=11% Similarity=0.084 Sum_probs=103.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCccch--hH--
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSATI--SV-- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~~~--~~-- 594 (813)
.++.++++|++++|+.++|+||||||||||++.+++.... .+.-.++|.+..-+ ++
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 407 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVAN 407 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHH
Confidence 4689999999999999999999999999999999654211 01112344332100 11
Q ss_pred -------------HHHHHHhcCCchhHh-----------hccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH
Q psy5289 595 -------------VDQIFTRVGAADSQY-----------RGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 595 -------------~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~ 649 (813)
+...+...++.+.+. .+...+|++++|...+++ .+.+|+++|||||++|+|+...
T Consensus 408 Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~ 487 (569)
T PRK10789 408 NIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTE 487 (569)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHH
Confidence 112233334333221 222457777776655555 4689999999999999999887
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~ 694 (813)
..+...+. .+. .++|+|++||+.+....+|++..+.+|++..
T Consensus 488 ~~i~~~l~-~~~--~~~tii~itH~~~~~~~~d~i~~l~~G~i~~ 529 (569)
T PRK10789 488 HQILHNLR-QWG--EGRTVIISAHRLSALTEASEILVMQHGHIAQ 529 (569)
T ss_pred HHHHHHHH-HHh--CCCEEEEEecchhHHHcCCEEEEEeCCEEEE
Confidence 77755443 333 3789999999998888888877777776653
No 345
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.54 E-value=1.1e-13 Score=163.84 Aligned_cols=166 Identities=13% Similarity=0.070 Sum_probs=108.5
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hh
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQ 580 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq 580 (813)
.+.+++....+- +...+.++++|++++|+.++|+||||||||||++.+++.... .+
T Consensus 334 ~i~~~~v~~~y~----~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 409 (585)
T TIGR01192 334 AVEFRHITFEFA----NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRK 409 (585)
T ss_pred eEEEEEEEEECC----CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHh
Confidence 466666543221 124689999999999999999999999999999999643211 11
Q ss_pred ccccccCCcc--chhHHH---------------HHHHhcCCch-----------hHhhccchhHHHHHHHHHHHH-hCCC
Q psy5289 581 IGCFVPCDSA--TISVVD---------------QIFTRVGAAD-----------SQYRGISTFMMEMKETATVIK-KCTE 631 (813)
Q Consensus 581 ~g~~vpa~~~--~~~~~d---------------~i~~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~-~~~~ 631 (813)
.-.++|.+.. .-++.+ ......++.+ .+..+...+|++++|...+++ .+.+
T Consensus 410 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 410 SIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred heEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 1124444321 001111 1112222222 122333456777766555554 4689
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 632 ~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
|+++||||||+|+|+.....+...+ +.+. .+.|+|++||+.+....+|++..+.+|++.
T Consensus 490 p~ililDEpts~LD~~~~~~i~~~l-~~~~--~~~tvI~isH~~~~~~~~d~i~~l~~G~i~ 548 (585)
T TIGR01192 490 APILVLDEATSALDVETEARVKNAI-DALR--KNRTTFIIAHRLSTVRNADLVLFLDQGRLI 548 (585)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHH-HHHh--CCCEEEEEEcChHHHHcCCEEEEEECCEEE
Confidence 9999999999999998877775444 4443 378999999999888888887777777664
No 346
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.54 E-value=1.5e-13 Score=162.99 Aligned_cols=169 Identities=11% Similarity=0.072 Sum_probs=112.2
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hh
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQ 580 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq 580 (813)
.+.+++..-.+ ..+..++.+++++++++|+.++|+||||||||||+|.++++... .+
T Consensus 341 ~i~~~~vsf~y---~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 417 (582)
T PRK11176 341 DIEFRNVTFTY---PGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRN 417 (582)
T ss_pred eEEEEEEEEec---CCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHh
Confidence 46776643221 11235799999999999999999999999999999999654211 11
Q ss_pred ccccccCCccc--hhH----------------HHHHHHhcCCchhHh-----------hccchhHHHHHHHHHHHHh-CC
Q psy5289 581 IGCFVPCDSAT--ISV----------------VDQIFTRVGAADSQY-----------RGISTFMMEMKETATVIKK-CT 630 (813)
Q Consensus 581 ~g~~vpa~~~~--~~~----------------~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~~-~~ 630 (813)
.-+++|.+..- -++ +...+...|+.+.+. .+-..+|++.+|...+++. ..
T Consensus 418 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 418 QVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred hceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 12345544210 011 111222333332221 1224577777776666654 68
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEE
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~ 695 (813)
+|+++||||||+++|+.....+...+.+ +. .++|+|++||+.+....+|++..+.+|++...
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~-~~--~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~ 559 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDE-LQ--KNRTSLVIAHRLSTIEKADEILVVEDGEIVER 559 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHH-Hh--CCCEEEEEecchHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999887776554443 33 37999999999999999998887887776543
No 347
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.54 E-value=4.3e-14 Score=132.53 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=115.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh-------cc---ccccCCcc------------------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-------IG---CFVPCDSA------------------ 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-------~g---~~vpa~~~------------------ 590 (813)
.-..-|++|+..+|+.+++.||+|+|||||+|.+.++-.... .. +-.|.+.+
T Consensus 15 ~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lw 94 (242)
T COG4161 15 HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLW 94 (242)
T ss_pred chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccC
Confidence 345668999999999999999999999999999865432110 00 01111110
Q ss_pred -chh----------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCh
Q psy5289 591 -TIS----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTST 646 (813)
Q Consensus 591 -~~~----------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~ 646 (813)
.++ ..-+++.|+.+.+...+..-.++++.++...|.+. +.+|.++++|||++.+||
T Consensus 95 phltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldp 174 (242)
T COG4161 95 PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174 (242)
T ss_pred chhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCH
Confidence 011 11246677777777777777788888877766665 589999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEEEC
Q psy5289 647 FDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 647 ~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~~~ 698 (813)
.-...+ -.|++.+.. .|.|-+++||..+.++ .+.++..+.+||+...++.
T Consensus 175 eitaqv-v~iikel~~-tgitqvivthev~va~k~as~vvyme~g~ive~g~a 225 (242)
T COG4161 175 EITAQI-VSIIKELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred HHHHHH-HHHHHHHHh-cCceEEEEEeehhHHHhhhhheEeeecCeeEeecch
Confidence 766655 457778887 7999999999999886 6677888999999876654
No 348
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.54 E-value=5.1e-14 Score=170.79 Aligned_cols=170 Identities=14% Similarity=0.029 Sum_probs=113.4
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hh
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LA 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------la 579 (813)
+.|++++....+- ....++.++++|++++|+.++|+||||||||||+|.+++... +.
T Consensus 476 ~~I~~~~vsf~y~---~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 552 (710)
T TIGR03796 476 GYVELRNITFGYS---PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLA 552 (710)
T ss_pred CeEEEEEEEEecC---CCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHH
Confidence 3466665543221 123578999999999999999999999999999999964321 01
Q ss_pred hccccccCCccc--hhH---------------HHHHHHhcCCchhH-----------hhccchhHHHHHHHHHHHHh-CC
Q psy5289 580 QIGCFVPCDSAT--ISV---------------VDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKK-CT 630 (813)
Q Consensus 580 q~g~~vpa~~~~--~~~---------------~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~~-~~ 630 (813)
+.-++||.+..- -++ +.+.+...++.+.+ ..+-..+|++++|...+++. +.
T Consensus 553 ~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 553 NSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred hheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 112345544311 011 11222333333322 22234577777776665554 68
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEE
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~ 697 (813)
+|+++||||||+++|+.....+. +.+.+ .++|+|++||..+....+|++..+.+|++...++
T Consensus 633 ~p~iliLDEptS~LD~~te~~i~----~~l~~-~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~ 694 (710)
T TIGR03796 633 NPSILILDEATSALDPETEKIID----DNLRR-RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGT 694 (710)
T ss_pred CCCEEEEECccccCCHHHHHHHH----HHHHh-cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecC
Confidence 99999999999999997655554 44444 4899999999999999999988888888875544
No 349
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.54 E-value=1.6e-13 Score=165.84 Aligned_cols=170 Identities=12% Similarity=0.080 Sum_probs=114.5
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------h
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------A 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------a 579 (813)
+.+.+++....+- .+...+.++++|++++|+.++|+||||||||||+|.+++.... .
T Consensus 454 ~~i~~~~vsf~y~---~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r 530 (694)
T TIGR01846 454 GAITFENIRFRYA---PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLR 530 (694)
T ss_pred CeEEEEEEEEEcC---CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHH
Confidence 3567766543321 1224689999999999999999999999999999999654211 1
Q ss_pred hccccccCCccc-----------------hhHHHHHHHhcCCchhH-----------hhccchhHHHHHHHHHHHHh-CC
Q psy5289 580 QIGCFVPCDSAT-----------------ISVVDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKK-CT 630 (813)
Q Consensus 580 q~g~~vpa~~~~-----------------~~~~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~~-~~ 630 (813)
+.-++||.+..- ..-+.......++.+.+ ..+-..+|++++|...+++. +.
T Consensus 531 ~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 531 RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred HhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 112345544210 01111223333433322 23335677777776665554 68
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEE
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~ 695 (813)
+|+++||||||+|+|+.....+...+.+ +. .++|+|++||..+....+|++..+.+|++...
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~l~~-~~--~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~ 672 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMRE-IC--RGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHH-Hh--CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999887776554443 33 47899999999998888998888888877654
No 350
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.53 E-value=2.5e-14 Score=169.98 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=113.4
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--------------------hccccccCCcc---chh-
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--------------------QIGCFVPCDSA---TIS- 593 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--------------------q~g~~vpa~~~---~~~- 593 (813)
...+.+++++.+.+|++++|+|||||||||||+++++..... +.-.++|.+.. ..+
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467899999999999999999999999999999997542110 01134443321 111
Q ss_pred -----------------------HHHHHHHhcCCchhHhhcc------chhHHHHHHH-HHHHHhCCCCcEEEEeCCCCC
Q psy5289 594 -----------------------VVDQIFTRVGAADSQYRGI------STFMMEMKET-ATVIKKCTENSLVIIDELGRG 643 (813)
Q Consensus 594 -----------------------~~d~i~~~~~~~d~~~~~~------s~f~~e~~~~-~~il~~~~~~~LlllDEp~~G 643 (813)
.++.++..+|+.+...... ..+++++++. +.+...+++|++++||||++|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 2345566666554322222 2466665554 445555799999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCEEEEEcCCh--HHHhhcCCCCceEeeEEEEEEEC
Q psy5289 644 TSTFDGFGMACSIARELASHRQPFTLFATHFH--EIALLSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 644 td~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~--el~~~~~~~~~v~~~~~~~~~~~ 698 (813)
+|+.....+.. .++.+++ .|.++|++||++ ++.+++|++..+.+|++...+..
T Consensus 197 LD~~~~~~l~~-~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~ 251 (617)
T TIGR00955 197 LDSFMAYSVVQ-VLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSP 251 (617)
T ss_pred hhHHHHHHHHH-HHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCH
Confidence 99998888865 4555665 589999999996 57789999888899988776654
No 351
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.53 E-value=1.4e-13 Score=164.66 Aligned_cols=142 Identities=17% Similarity=0.104 Sum_probs=99.6
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh---------ccccccCCcc-------------------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ---------IGCFVPCDSA------------------- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq---------~g~~vpa~~~------------------- 590 (813)
..+.++++|++.+|++++|+||||||||||+|.+++...... .-.++|.+..
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 544 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDM 544 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhh
Confidence 468999999999999999999999999999999976532110 0123443321
Q ss_pred -----chhHHHHHHHhcCCchhHhhc---------cchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHH
Q psy5289 591 -----TISVVDQIFTRVGAADSQYRG---------ISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACS 655 (813)
Q Consensus 591 -----~~~~~d~i~~~~~~~d~~~~~---------~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~ 655 (813)
.-..+..++..+++.+.+... ...+|++++|...+++. +.+|+++||||||+|+|+.....+
T Consensus 545 ~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l--- 621 (659)
T TIGR00954 545 KRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYM--- 621 (659)
T ss_pred hccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH---
Confidence 001122345556665544332 25788888877666665 689999999999999999754443
Q ss_pred HHHHHHhcCCCEEEEEcCChHHHhhcCCCC
Q psy5289 656 IARELASHRQPFTLFATHFHEIALLSRVIP 685 (813)
Q Consensus 656 i~~~l~~~~~~~~l~~TH~~el~~~~~~~~ 685 (813)
.+.+.+ .|.++|++||+.++...++++.
T Consensus 622 -~~~l~~-~~~tvI~isH~~~~~~~~d~il 649 (659)
T TIGR00954 622 -YRLCRE-FGITLFSVSHRKSLWKYHEYLL 649 (659)
T ss_pred -HHHHHH-cCCEEEEEeCchHHHHhCCEEE
Confidence 344444 4899999999999888777653
No 352
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.53 E-value=5.5e-14 Score=148.06 Aligned_cols=95 Identities=17% Similarity=0.119 Sum_probs=71.6
Q ss_pred HHHhcCCch-hHhhccchhHHHHHHHHHHHHhC-C---CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q psy5289 598 IFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-T---ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFAT 672 (813)
Q Consensus 598 i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~~-~---~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~T 672 (813)
++.++|+.. .+....+++|++++|...+++.. . +|+++|||||++|+|+.+...+.. ++..+.+ .|.++|++|
T Consensus 152 ~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~-~L~~l~~-~g~tvIiit 229 (261)
T cd03271 152 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLE-VLQRLVD-KGNTVVVIE 229 (261)
T ss_pred HHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHH-HHHHHHh-CCCEEEEEe
Confidence 344567665 46677789999988877776654 3 379999999999999999887755 5555665 589999999
Q ss_pred CChHHHhhcCCCCce------EeeEEEE
Q psy5289 673 HFHEIALLSRVIPTF------RNVQVSA 694 (813)
Q Consensus 673 H~~el~~~~~~~~~v------~~~~~~~ 694 (813)
|++++...++++..+ .+|++.+
T Consensus 230 H~~~~i~~aD~ii~Lgp~~g~~~G~iv~ 257 (261)
T cd03271 230 HNLDVIKCADWIIDLGPEGGDGGGQVVA 257 (261)
T ss_pred CCHHHHHhCCEEEEecCCcCCCCCEEEE
Confidence 999888877766555 4555543
No 353
>PLN03073 ABC transporter F family; Provisional
Probab=99.53 E-value=3.4e-14 Score=169.95 Aligned_cols=149 Identities=14% Similarity=0.146 Sum_probs=98.6
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--hhhcc--ccccCC----ccc-------------------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--LAQIG--CFVPCD----SAT------------------- 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--laq~g--~~vpa~----~~~------------------- 591 (813)
..+.++++|++..|+.++|+||||||||||||++++..+ ...-| .+++.. ...
T Consensus 190 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~ 269 (718)
T PLN03073 190 RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEE 269 (718)
T ss_pred CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHH
Confidence 458999999999999999999999999999999975310 00000 001100 000
Q ss_pred hhH---------------------------------------------------HHHHHHhcCCc-hhHhhccchhHHHH
Q psy5289 592 ISV---------------------------------------------------VDQIFTRVGAA-DSQYRGISTFMMEM 619 (813)
Q Consensus 592 ~~~---------------------------------------------------~d~i~~~~~~~-d~~~~~~s~f~~e~ 619 (813)
+++ ...++..+|.. +......+++|+++
T Consensus 270 ~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~ 349 (718)
T PLN03073 270 AQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGW 349 (718)
T ss_pred HHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHH
Confidence 000 01122333332 22345668899998
Q ss_pred HHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEE
Q psy5289 620 KETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQV 692 (813)
Q Consensus 620 ~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~ 692 (813)
++...+++. +.+|+++||||||+|+|+..... +.+.+.+ .+.++|++||+.++. .+++++..+.+|++
T Consensus 350 k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~----l~~~L~~-~~~tviivsHd~~~l~~~~d~i~~l~~g~i 419 (718)
T PLN03073 350 RMRIALARALFIEPDLLLLDEPTNHLDLHAVLW----LETYLLK-WPKTFIVVSHAREFLNTVVTDILHLHGQKL 419 (718)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH----HHHHHHH-cCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 887777665 58999999999999999875433 4455554 478999999997765 46777766665544
No 354
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.53 E-value=1.3e-13 Score=163.77 Aligned_cols=167 Identities=11% Similarity=0.041 Sum_probs=111.2
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhc
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQI 581 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~ 581 (813)
.+.+++...-.. ++.++.++++|++++|+.++|+||+||||||+++.++....- .+.
T Consensus 349 ~i~~~~vsf~~~----~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~ 424 (588)
T PRK11174 349 TIEAEDLEILSP----DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKH 424 (588)
T ss_pred eEEEEeeEEecc----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhh
Confidence 477776632111 125789999999999999999999999999999999654310 001
Q ss_pred cccccCCccc--hhHH---------------HHHHHhcCCchh-----------HhhccchhHHHHHHHHHHHHh-CCCC
Q psy5289 582 GCFVPCDSAT--ISVV---------------DQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKK-CTEN 632 (813)
Q Consensus 582 g~~vpa~~~~--~~~~---------------d~i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~~-~~~~ 632 (813)
-++||++..- -++. ...+...++.+. +..+-..+|++.+|+..+++. +.+|
T Consensus 425 i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 425 LSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred eEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 1245544210 0111 112222233222 222234577777776666554 6899
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEE
Q psy5289 633 SLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 633 ~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~ 694 (813)
+++||||||+++|+.....+...+. .+. .+.|+|++||.++....+|++..+.+|++..
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~-~~~--~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e 563 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALN-AAS--RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQ 563 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHH-HHh--CCCEEEEEecChHHHHhCCEEEEEeCCeEee
Confidence 9999999999999988777755443 333 3789999999999888899887777776653
No 355
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.52 E-value=5.2e-14 Score=158.50 Aligned_cols=156 Identities=17% Similarity=0.125 Sum_probs=116.3
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-------------------------hccccccCCc-----
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------------------------QIGCFVPCDS----- 589 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-------------------------q~g~~vpa~~----- 589 (813)
...++|+|+..+|++++|+|++||||||+.|+++.+.... |+++--|-.+
T Consensus 305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~ 384 (539)
T COG1123 305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRM 384 (539)
T ss_pred eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccc
Confidence 4678999999999999999999999999999996543210 1111111100
Q ss_pred ------------------cch-hHHHHHHHhcCCchh-HhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q psy5289 590 ------------------ATI-SVVDQIFTRVGAADS-QYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 590 ------------------~~~-~~~d~i~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d 648 (813)
+.. ..++.++.++|+..+ +.+....||++.+|...|++. +.+|.++|+|||++.+|+.-
T Consensus 385 tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsv 464 (539)
T COG1123 385 TVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSV 464 (539)
T ss_pred cHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHH
Confidence 000 124567888888764 667778999988887666665 79999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEE
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALE 696 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~ 696 (813)
...+.. ++..+.++.|.+.||+|||+.+.+ +||++..+.+|++....
T Consensus 465 qa~Vln-Ll~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G 512 (539)
T COG1123 465 QAQVLN-LLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512 (539)
T ss_pred HHHHHH-HHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeC
Confidence 777755 444455557999999999998876 78888888888876554
No 356
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.51 E-value=2.6e-13 Score=164.45 Aligned_cols=169 Identities=17% Similarity=0.132 Sum_probs=113.1
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hh
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LA 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------la 579 (813)
+.|.+++...-+ . +...+.++++|++++|+.++|+||||||||||+|.++++.. +.
T Consensus 472 ~~I~~~~vsf~y-~---~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 547 (708)
T TIGR01193 472 GDIVINDVSYSY-G---YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLR 547 (708)
T ss_pred CcEEEEEEEEEc-C---CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHH
Confidence 346666654322 1 12468999999999999999999999999999999964321 01
Q ss_pred hccccccCCccc------------------hhHHHHHHHhcCCchhH-----------hhccchhHHHHHHHHHHHHh-C
Q psy5289 580 QIGCFVPCDSAT------------------ISVVDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKK-C 629 (813)
Q Consensus 580 q~g~~vpa~~~~------------------~~~~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~~-~ 629 (813)
+.-++||.+..- -.-+.+.....++.+.+ ..+-..+|++++|...+++. +
T Consensus 548 ~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall 627 (708)
T TIGR01193 548 QFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALL 627 (708)
T ss_pred HheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHh
Confidence 112345544210 00112223333433322 22334577777776666655 5
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEE
Q psy5289 630 TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 630 ~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~ 696 (813)
.+|+++||||||+++|+.....+...+.+ + .++|+|++||..+....+|++..+.+|++...+
T Consensus 628 ~~p~iliLDE~Ts~LD~~te~~i~~~L~~-~---~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 628 TDSKVLILDESTSNLDTITEKKIVNNLLN-L---QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHH-h---cCCEEEEEecchHHHHcCCEEEEEECCEEEEEC
Confidence 89999999999999999876666554433 2 378999999999999999988888888776443
No 357
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.3e-13 Score=152.30 Aligned_cols=161 Identities=13% Similarity=0.013 Sum_probs=111.2
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh--------------------ccccccCCc--------
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ--------------------IGCFVPCDS-------- 589 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq--------------------~g~~vpa~~-------- 589 (813)
...+.++++|+..+|+-++|+|++||||||++..++..-...| .-++++.+.
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr 429 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLR 429 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHH
Confidence 3579999999999999999999999999999999864211111 111122111
Q ss_pred ---------cchhHHHHHHHhcCCchhHh-----------hccchhHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChhh
Q psy5289 590 ---------ATISVVDQIFTRVGAADSQY-----------RGISTFMMEMKE-TATVIKKCTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 590 ---------~~~~~~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~-~~~il~~~~~~~LlllDEp~~Gtd~~d 648 (813)
+.-.-+-.++..+|+.+-+. .+-..||++.+| ++.+.....+.+++||||||-|+|+..
T Consensus 430 ~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~T 509 (573)
T COG4987 430 DNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPIT 509 (573)
T ss_pred HHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhh
Confidence 00001123455566544332 222355655554 444444568999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCeE
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNL 701 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i 701 (813)
...+...+.+++. |+|+|++||..-..+.+|++..+.||++...++..++
T Consensus 510 E~~vL~ll~~~~~---~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~L 559 (573)
T COG4987 510 ERQVLALLFEHAE---GKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAEL 559 (573)
T ss_pred HHHHHHHHHHHhc---CCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhh
Confidence 8888776666643 7899999999888888999999999988766554433
No 358
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.51 E-value=2.1e-13 Score=164.94 Aligned_cols=171 Identities=13% Similarity=0.039 Sum_probs=111.9
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hh
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LA 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------la 579 (813)
+.|++++...-+-. ..+.++.++++|++++|+.++|+|||||||||+++.+....- +.
T Consensus 477 ~~I~~~nVsf~Y~~--~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 477 GLIEFQDVSFSYPN--RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLH 554 (711)
T ss_pred CeEEEEEEEEECCC--CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHH
Confidence 34666654322100 112578999999999999999999999999999999854321 11
Q ss_pred hccccccCCcc-----------------chhHHHHHHHhcCCchhH-----------hhccchhHHHHHHHHHHHHh-CC
Q psy5289 580 QIGCFVPCDSA-----------------TISVVDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKK-CT 630 (813)
Q Consensus 580 q~g~~vpa~~~-----------------~~~~~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~~-~~ 630 (813)
+.-.+||++.. .-..+.+.+...++.+.+ ..+-..+|++++|+..+++. ..
T Consensus 555 ~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~ 634 (711)
T TIGR00958 555 RQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634 (711)
T ss_pred hhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence 11234444321 001112233334443322 22234577777776666655 68
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEE
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~ 697 (813)
+|+++||||||+++|+.....+ .+ .....++|+|++||..+....+|++..+++|++...++
T Consensus 635 ~p~ILILDEpTSaLD~~te~~i----~~-~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt 696 (711)
T TIGR00958 635 KPRVLILDEATSALDAECEQLL----QE-SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGT 696 (711)
T ss_pred CCCEEEEEccccccCHHHHHHH----HH-hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeC
Confidence 9999999999999999654433 22 22225789999999999988899988888988876554
No 359
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.2e-13 Score=131.18 Aligned_cols=155 Identities=21% Similarity=0.193 Sum_probs=105.6
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh--------hhhhcc---------------------ccc---c
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV--------FLAQIG---------------------CFV---P 586 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~--------~laq~g---------------------~~v---p 586 (813)
..-..+++|+.-+|++++|+|.+||||||||+++..-. +-..-| .|| |
T Consensus 19 ~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP 98 (258)
T COG4107 19 GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNP 98 (258)
T ss_pred CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCc
Confidence 34577999999999999999999999999999985211 100000 011 1
Q ss_pred CCc--------cchhH----------------HHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q psy5289 587 CDS--------ATISV----------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDEL 640 (813)
Q Consensus 587 a~~--------~~~~~----------------~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp 640 (813)
.+. +.++- ....+.++... +.+.....+|+++|+|...|.++ .+.|.|+++|||
T Consensus 99 ~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEP 178 (258)
T COG4107 99 RDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEP 178 (258)
T ss_pred cccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCC
Confidence 111 01110 01133344332 34455568999999999888887 599999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhh-cCCCCceEeeEEEE
Q psy5289 641 GRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALL-SRVIPTFRNVQVSA 694 (813)
Q Consensus 641 ~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~-~~~~~~v~~~~~~~ 694 (813)
|.|+|..-...+.. ++.-+..+.+..++++|||...+.+ +++...++.|.+..
T Consensus 179 TGGLDVSVQARLLD-llrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 179 TGGLDVSVQARLLD-LLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred CCCcchhhHHHHHH-HHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 99999865555533 5555555578999999999999985 45666677776654
No 360
>KOG0059|consensus
Probab=99.50 E-value=3.2e-14 Score=174.60 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=120.4
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhh----------------------hhhhccccccCCccchh-----
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV----------------------FLAQIGCFVPCDSATIS----- 593 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~----------------------~laq~g~~vpa~~~~~~----- 593 (813)
.-+++++.+++|++.++.|||||||||++|++.+.. ...++| |+|...+-..
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iG-yCPQ~d~l~~~lT~r 658 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLG-YCPQFDALWEELTGR 658 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcc-cCCchhhhhhhccHH
Confidence 567999999999999999999999999999874321 112233 5565432110
Q ss_pred -------------------HHHHHHHhcCCchhHhhccchhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHH
Q psy5289 594 -------------------VVDQIFTRVGAADSQYRGISTFMMEMKET-ATVIKKCTENSLVIIDELGRGTSTFDGFGMA 653 (813)
Q Consensus 594 -------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~-~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~ 653 (813)
.++.++..+++.+......++++++++|. ..+++...+|++|+||||++|+||.....+
T Consensus 659 EhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~l- 737 (885)
T KOG0059|consen 659 EHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHL- 737 (885)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHH-
Confidence 13445666777777777888999998874 556666789999999999999999766655
Q ss_pred HHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEEEC
Q psy5289 654 CSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 654 ~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~~~ 698 (813)
|.++..+.+ .|..+|++||.+|.++ +|++...+.+|++.+.+..
T Consensus 738 W~ii~~~~k-~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~ 782 (885)
T KOG0059|consen 738 WDIIARLRK-NGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSP 782 (885)
T ss_pred HHHHHHHHh-cCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecCh
Confidence 888888887 4559999999988876 8899999999999998763
No 361
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.50 E-value=1.4e-13 Score=141.97 Aligned_cols=145 Identities=13% Similarity=0.086 Sum_probs=88.7
Q ss_pred cccccccC-CceeEEEEccCCCChhHHHhhhhhhhh--h----------hh---------cccc--ccCCc------cch
Q psy5289 543 NDVYFKSG-EVSFNLVTGPNMGGKSTYIRSIGVSVF--L----------AQ---------IGCF--VPCDS------ATI 592 (813)
Q Consensus 543 n~v~l~~~-~g~~~~itGpNgsGKSTllr~i~~~~~--l----------aq---------~g~~--vpa~~------~~~ 592 (813)
++++|... +|++++|+|||||||||+|++|....+ . .. ++.. .+... ..+
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl 97 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGL 97 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCC
Confidence 45666543 478999999999999999999863210 0 00 0000 00000 000
Q ss_pred hH--HHH-HHHh-cCCchhHhhccchhHHHHHHHHHHHHhC-----------CCCcEEEEeCCCCCCChhhHHHHHHHHH
Q psy5289 593 SV--VDQ-IFTR-VGAADSQYRGISTFMMEMKETATVIKKC-----------TENSLVIIDELGRGTSTFDGFGMACSIA 657 (813)
Q Consensus 593 ~~--~d~-i~~~-~~~~d~~~~~~s~f~~e~~~~~~il~~~-----------~~~~LlllDEp~~Gtd~~d~~~i~~~i~ 657 (813)
.. +.+ +... .+..+.+.....++++++++...+.+.. .+|+++|+|||++|+|+.....+.. ++
T Consensus 98 ~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~-~l 176 (213)
T cd03279 98 DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVAT-AL 176 (213)
T ss_pred CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHH-HH
Confidence 10 111 1111 1234455666778888888776665543 2578999999999999987777644 55
Q ss_pred HHHHhcCCCEEEEEcCChHHHhh-cCCCCceEe
Q psy5289 658 RELASHRQPFTLFATHFHEIALL-SRVIPTFRN 689 (813)
Q Consensus 658 ~~l~~~~~~~~l~~TH~~el~~~-~~~~~~v~~ 689 (813)
+.+.+ .+.++|++||++++... ++++..+.+
T Consensus 177 ~~~~~-~~~tii~itH~~~~~~~~~~~i~~~~~ 208 (213)
T cd03279 177 ELIRT-ENRMVGVISHVEELKERIPQRLEVIKT 208 (213)
T ss_pred HHHHh-CCCEEEEEECchHHHHhhCcEEEEEec
Confidence 56665 48899999999887754 344333333
No 362
>PLN03140 ABC transporter G family member; Provisional
Probab=99.49 E-value=1.1e-13 Score=176.33 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=110.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhccccccCCcc---chh---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQIGCFVPCDSA---TIS--- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~g~~vpa~~~---~~~--- 593 (813)
..+.+++++.+.+|++++|+|||||||||||+++++.... ...-.++|.... .++
T Consensus 893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E 972 (1470)
T PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRE 972 (1470)
T ss_pred ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHH
Confidence 3689999999999999999999999999999999764210 001123333211 011
Q ss_pred ---------------------HHHHHHHhcCCchhHhhc-----cchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCh
Q psy5289 594 ---------------------VVDQIFTRVGAADSQYRG-----ISTFMMEMKETATVIK-KCTENSLVIIDELGRGTST 646 (813)
Q Consensus 594 ---------------------~~d~i~~~~~~~d~~~~~-----~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~ 646 (813)
.++.++..+++.+..... ...+|+|++++..|+. .+.+|++++|||||+|+|+
T Consensus 973 ~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~ 1052 (1470)
T PLN03140 973 SLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1052 (1470)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 123455556655433322 2467888777666555 4699999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEEEcCChH--HHhhcCCCCceEe-eEEEEEEE
Q psy5289 647 FDGFGMACSIARELASHRQPFTLFATHFHE--IALLSRVIPTFRN-VQVSALEQ 697 (813)
Q Consensus 647 ~d~~~i~~~i~~~l~~~~~~~~l~~TH~~e--l~~~~~~~~~v~~-~~~~~~~~ 697 (813)
.....+.. +++.+++ .|.++|++||+++ +.+++|++..+.+ |++...+.
T Consensus 1053 ~~a~~v~~-~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140 1053 RAAAIVMR-TVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred HHHHHHHH-HHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECC
Confidence 88777754 5556666 5899999999975 4678888877775 77766554
No 363
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.49 E-value=1.7e-13 Score=135.03 Aligned_cols=153 Identities=17% Similarity=0.189 Sum_probs=101.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhc-----cc------------c---c---cC--Cccchh
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQI-----GC------------F---V---PC--DSATIS 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~-----g~------------~---v---pa--~~~~~~ 593 (813)
..+.+++++++.+|+++.|+|.|||||||+++.|++-..+... |. + | |. ....++
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT 98 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT 98 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence 6789999999999999999999999999999999753321100 00 0 0 00 000111
Q ss_pred H---------------------------HHHHHHhc--CCchhHhhccchhHHHHHHHH-HHHHhCCCCcEEEEeCCCCC
Q psy5289 594 V---------------------------VDQIFTRV--GAADSQYRGISTFMMEMKETA-TVIKKCTENSLVIIDELGRG 643 (813)
Q Consensus 594 ~---------------------------~d~i~~~~--~~~d~~~~~~s~f~~e~~~~~-~il~~~~~~~LlllDEp~~G 643 (813)
+ +..-++++ |....+......||++.+|.. .+++.+.+|.+++|||=|+.
T Consensus 99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAA 178 (263)
T COG1101 99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178 (263)
T ss_pred HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhc
Confidence 1 11122232 345556666777888888754 45555799999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEE
Q psy5289 644 TSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQV 692 (813)
Q Consensus 644 td~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~ 692 (813)
+||.-+..+...-.+ +.++.+.|++++||.++-+ .+-++...+..|.+
T Consensus 179 LDPkta~~vm~lT~k-iV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~I 227 (263)
T COG1101 179 LDPKTAEFVMELTAK-IVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227 (263)
T ss_pred CCcchHHHHHHHHHH-HHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeE
Confidence 999887777664444 4444789999999998765 34454444444333
No 364
>KOG0927|consensus
Probab=99.48 E-value=6.2e-14 Score=154.30 Aligned_cols=149 Identities=18% Similarity=0.160 Sum_probs=108.5
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh----------------hhhc-----c-------ccccCC--c
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF----------------LAQI-----G-------CFVPCD--S 589 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~----------------laq~-----g-------~~vpa~--~ 589 (813)
.+.++++|.++.++-++++||||+||||+||.+..... +.|- + ..+|+- .
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~ 483 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDE 483 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhcccc
Confidence 58889999999999999999999999999999843210 0110 0 011111 1
Q ss_pred cchhHHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCE
Q psy5289 590 ATISVVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPF 667 (813)
Q Consensus 590 ~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~ 667 (813)
.+...+..++.|+|+. |......+++|.+++.+...... ...|.|++|||||+|+|...-.+++ +++.+ ...+
T Consensus 484 ~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~la----eaiNe-~~Gg 558 (614)
T KOG0927|consen 484 KELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALA----EAINE-FPGG 558 (614)
T ss_pred chHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHH----HHHhc-cCCc
Confidence 2344556789999976 77778889999988876655554 5899999999999999987654444 44554 4557
Q ss_pred EEEEcCChHHH-hhcCCCCceEeeEEE
Q psy5289 668 TLFATHFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 668 ~l~~TH~~el~-~~~~~~~~v~~~~~~ 693 (813)
++++|||..+. +++++++.+.|+.+.
T Consensus 559 vv~vSHDfrlI~qVaeEi~~c~~~~~~ 585 (614)
T KOG0927|consen 559 VVLVSHDFRLISQVAEEIWVCENGTVT 585 (614)
T ss_pred eeeeechhhHHHHHHHHhHhhccCcee
Confidence 89999997666 478888888887653
No 365
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.47 E-value=7.7e-13 Score=155.17 Aligned_cols=158 Identities=17% Similarity=0.097 Sum_probs=104.5
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hh
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQ 580 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq 580 (813)
.+.+++..-.+- .+..++.++++|++++|+.++|+||||||||||+|.+++.... .+
T Consensus 320 ~i~~~~v~f~y~---~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 320 SLEFSGLSVAYP---GRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred eEEEEEEEEECC---CCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 466665432221 1124789999999999999999999999999999999643211 11
Q ss_pred ccccccCCccc-----------------hhHHHHHHHhcCCchhH-----------hhccchhHHHHHHHHHHHHh-CCC
Q psy5289 581 IGCFVPCDSAT-----------------ISVVDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKK-CTE 631 (813)
Q Consensus 581 ~g~~vpa~~~~-----------------~~~~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~~-~~~ 631 (813)
.-.+||.+..- -.-+...+...++.+.+ ..+-..+|++++|...+++. +.+
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 12234443210 01112233444444322 22335678887777666655 689
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCC
Q psy5289 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVI 684 (813)
Q Consensus 632 ~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~ 684 (813)
|+++|+||||+++|+.....+...+.+ +. .++|+|++||+++....+|++
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~-~~--~~~t~i~itH~~~~~~~~d~i 526 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRA-LA--QGRTVLLVTHRLALAERADRI 526 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHH-hc--CCCEEEEEecCHHHHHhCCEE
Confidence 999999999999999887777554443 33 479999999999888777754
No 366
>KOG0062|consensus
Probab=99.47 E-value=1.2e-13 Score=151.38 Aligned_cols=138 Identities=17% Similarity=0.168 Sum_probs=99.7
Q ss_pred CceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh--hhh----hccccccCCcc----c---------------
Q psy5289 537 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV--FLA----QIGCFVPCDSA----T--------------- 591 (813)
Q Consensus 537 ~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~--~la----q~g~~vpa~~~----~--------------- 591 (813)
+...+.++.++....|+-++++||||+|||||||+|+--. .+. -.|+++|+... .
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~ 170 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLA 170 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhc
Confidence 4567888888888899999999999999999999997511 110 12555554321 0
Q ss_pred ----hhHHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q psy5289 592 ----ISVVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQ 665 (813)
Q Consensus 592 ----~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~ 665 (813)
..+.++++.-+|.. +-......+||++.+....++++ ..+|+|+||||| |+..|..+++| +-+||.. .+
T Consensus 171 ~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEP---TNhLDv~av~W-Le~yL~t-~~ 245 (582)
T KOG0062|consen 171 GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEP---TNHLDVVAVAW-LENYLQT-WK 245 (582)
T ss_pred cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCC---cccchhHHHHH-HHHHHhh-CC
Confidence 11122355566743 45567778999998765555554 589999999999 77777788988 7788887 56
Q ss_pred CEEEEEcCChHHHh
Q psy5289 666 PFTLFATHFHEIAL 679 (813)
Q Consensus 666 ~~~l~~TH~~el~~ 679 (813)
.|+|++|||..+..
T Consensus 246 ~T~liVSHDr~FLn 259 (582)
T KOG0062|consen 246 ITSLIVSHDRNFLN 259 (582)
T ss_pred ceEEEEeccHHHHH
Confidence 89999999976654
No 367
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.47 E-value=1.7e-13 Score=175.20 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=110.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh---hh----------------hccccccCCcc---chh---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF---LA----------------QIGCFVPCDSA---TIS--- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~---la----------------q~g~~vpa~~~---~~~--- 593 (813)
..+.+++++.+.+|++++|+|||||||||||+++++... .. +.-.++|.+.. ..+
T Consensus 776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E 855 (1394)
T TIGR00956 776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRE 855 (1394)
T ss_pred cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHH
Confidence 468999999999999999999999999999999976532 00 01124443311 111
Q ss_pred ---------------------HHHHHHHhcCCchhHhhccc----hhHHHHHHHHHHHH-hCCCCc-EEEEeCCCCCCCh
Q psy5289 594 ---------------------VVDQIFTRVGAADSQYRGIS----TFMMEMKETATVIK-KCTENS-LVIIDELGRGTST 646 (813)
Q Consensus 594 ---------------------~~d~i~~~~~~~d~~~~~~s----~f~~e~~~~~~il~-~~~~~~-LlllDEp~~Gtd~ 646 (813)
.++.++..+++.+......+ .+|+|++++..|.. .+.+|+ +++|||||+|+|+
T Consensus 856 ~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~ 935 (1394)
T TIGR00956 856 SLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDS 935 (1394)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCH
Confidence 12345555665544333333 57887777666555 468885 9999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEEEcCChHH--HhhcCCCCceEee-EEEEEEE
Q psy5289 647 FDGFGMACSIARELASHRQPFTLFATHFHEI--ALLSRVIPTFRNV-QVSALEQ 697 (813)
Q Consensus 647 ~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el--~~~~~~~~~v~~~-~~~~~~~ 697 (813)
.....+. .+++.+++ .|+++|++||+++. ...+|++..+.+| ++.....
T Consensus 936 ~~~~~i~-~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 936 QTAWSIC-KLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred HHHHHHH-HHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 8877774 45666665 58999999999764 4678888778776 7766554
No 368
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.46 E-value=1.6e-13 Score=141.13 Aligned_cols=79 Identities=10% Similarity=0.083 Sum_probs=57.9
Q ss_pred CchhHhhccchhHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH
Q psy5289 604 AADSQYRGISTFMMEMKETATVIKKC-----TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA 678 (813)
Q Consensus 604 ~~d~~~~~~s~f~~e~~~~~~il~~~-----~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~ 678 (813)
+.+......+.++.+|++...+.+.. .+|+++++|||++|+|+.....+ +.++..+.+ +.+++++||+.++.
T Consensus 117 L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l-~~~l~~~~~--~~~~iivs~~~~~~ 193 (212)
T cd03274 117 MPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIV-ANYIKERTK--NAQFIVISLRNNMF 193 (212)
T ss_pred cccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHH-HHHHHHHcC--CCEEEEEECcHHHH
Confidence 33334444567888888877766643 35799999999999999877766 445555543 67899999999888
Q ss_pred hhcCCCC
Q psy5289 679 LLSRVIP 685 (813)
Q Consensus 679 ~~~~~~~ 685 (813)
.+++++.
T Consensus 194 ~~~d~v~ 200 (212)
T cd03274 194 ELADRLV 200 (212)
T ss_pred HhCCEEE
Confidence 8888754
No 369
>PTZ00243 ABC transporter; Provisional
Probab=99.45 E-value=2.2e-13 Score=175.75 Aligned_cols=156 Identities=13% Similarity=0.095 Sum_probs=108.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------hhccccccCCcc--chhHHHH------------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------AQIGCFVPCDSA--TISVVDQ------------ 597 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------aq~g~~vpa~~~--~~~~~d~------------ 597 (813)
.++.++++|++.+|++++|+|||||||||||+++++.... .+.-.++|.... ..++.+.
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~ 752 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARL 752 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHH
Confidence 4689999999999999999999999999999999754211 111124444321 0111111
Q ss_pred -----------HHHhc--CCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q psy5289 598 -----------IFTRV--GAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASH 663 (813)
Q Consensus 598 -----------i~~~~--~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~ 663 (813)
.+..+ |....+......+|++++++..+++. +.+|+++|||||++|+|+..+..+...++....
T Consensus 753 ~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~-- 830 (1560)
T PTZ00243 753 ADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL-- 830 (1560)
T ss_pred HHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh--
Confidence 11222 23333344556788888877666665 589999999999999999877777655443322
Q ss_pred CCCEEEEEcCChHHHhhcCCCCceEeeEEEEEE
Q psy5289 664 RQPFTLFATHFHEIALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 664 ~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~ 696 (813)
.|.|+|++||+.++...+|++..+++|++...+
T Consensus 831 ~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G 863 (1560)
T PTZ00243 831 AGKTRVLATHQVHVVPRADYVVALGDGRVEFSG 863 (1560)
T ss_pred CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEec
Confidence 378999999999988888888888888776543
No 370
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.45 E-value=9.6e-13 Score=144.24 Aligned_cols=176 Identities=17% Similarity=0.184 Sum_probs=120.2
Q ss_pred cceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------h
Q psy5289 519 TGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------L 578 (813)
Q Consensus 519 ~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------l 578 (813)
++.+.+++..- -......++.++++|....|+.++|+||+|||||||.|.+.++.. +
T Consensus 332 ~g~L~Ve~l~~---~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~l 408 (580)
T COG4618 332 QGALSVERLTA---APPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQL 408 (580)
T ss_pred CceeeEeeeee---cCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHh
Confidence 35666665432 111123689999999999999999999999999999999854421 1
Q ss_pred -hhccccccCCccch-hHHHHHHHhcC----------------C-----------chhHhhccchhHHHHHHHHHHHHh-
Q psy5289 579 -AQIGCFVPCDSATI-SVVDQIFTRVG----------------A-----------ADSQYRGISTFMMEMKETATVIKK- 628 (813)
Q Consensus 579 -aq~g~~vpa~~~~~-~~~d~i~~~~~----------------~-----------~d~~~~~~s~f~~e~~~~~~il~~- 628 (813)
.++ .|.|.+-.-+ +-+.+-..|++ + .-.+..+-+++|++++|...+.+.
T Consensus 409 G~hi-GYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 409 GRHI-GYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL 487 (580)
T ss_pred cccc-CcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH
Confidence 122 2455432100 00001111221 1 123334456778888776655555
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCe
Q psy5289 629 CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDN 700 (813)
Q Consensus 629 ~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~ 700 (813)
-.+|.||+||||-+.+|..--.+++.+|.+ ++. .|++++++||-+.+...+|++-.+++|.+......++
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~-~k~-rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~e 557 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILA-AKA-RGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREE 557 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHH-HHH-cCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHH
Confidence 589999999999999999766677666665 554 6999999999999999999998899998887665443
No 371
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.44 E-value=3e-13 Score=174.35 Aligned_cols=157 Identities=15% Similarity=0.059 Sum_probs=110.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh-------ccccccCCccc--hhHHHHH-----------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-------IGCFVPCDSAT--ISVVDQI----------- 598 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-------~g~~vpa~~~~--~~~~d~i----------- 598 (813)
.++.++++|++++|++++|+|||||||||||+++++...... .-.|+|....- -++.+.|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 518 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRY 518 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHH
Confidence 468899999999999999999999999999999965432110 01234433210 0121211
Q ss_pred ---HHhcCCchh-----------HhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q psy5289 599 ---FTRVGAADS-----------QYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASH 663 (813)
Q Consensus 599 ---~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~ 663 (813)
....++.+. +.....++|++++++..++++ +.+|+++|||||++|+|+..+..+...++..+.+
T Consensus 519 ~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~- 597 (1490)
T TIGR01271 519 TSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMS- 597 (1490)
T ss_pred HHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-
Confidence 111122222 222345788888887777665 5899999999999999999888887655554443
Q ss_pred CCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEE
Q psy5289 664 RQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 664 ~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~ 697 (813)
++|+|++||+++....+|++..+.+|++.....
T Consensus 598 -~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~ 630 (1490)
T TIGR01271 598 -NKTRILVTSKLEHLKKADKILLLHEGVCYFYGT 630 (1490)
T ss_pred -CCeEEEEeCChHHHHhCCEEEEEECCEEEEEcC
Confidence 789999999988888888888888888765543
No 372
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.43 E-value=6.2e-13 Score=126.04 Aligned_cols=143 Identities=16% Similarity=0.202 Sum_probs=102.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhh-------hhhhhcccc---------------------------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS-------VFLAQIGCF--------------------------- 584 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~-------~~laq~g~~--------------------------- 584 (813)
-+|.++++|+.+.|+++++-||+|+||||+||++-.. +...|.|..
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 3688899999999999999999999999999997321 111122211
Q ss_pred -ccCCc------------------cchhHHHHHHHhcCCchhH-hhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q psy5289 585 -VPCDS------------------ATISVVDQIFTRVGAADSQ-YRGISTFMMEMKETATVIKK-CTENSLVIIDELGRG 643 (813)
Q Consensus 585 -vpa~~------------------~~~~~~d~i~~~~~~~d~~-~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~G 643 (813)
+|--. +. .....+++|+++.+.+ ....+||+++.+|...|.+. +.+-++++|||||+.
T Consensus 104 viPRV~aLdVvaePll~~gv~~~~a~-~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTas 182 (235)
T COG4778 104 VIPRVSALDVVAEPLLARGVPREVAR-AKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTAS 182 (235)
T ss_pred hccCcchHHHHHhHHHHcCCCHHHHH-HHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCccc
Confidence 12110 00 0113467888877665 44578999998888888876 589999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCC
Q psy5289 644 TSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVI 684 (813)
Q Consensus 644 td~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~ 684 (813)
+|......+..-|-+ -+. .|+.++=+-||.+..+ .+++.
T Consensus 183 LDa~Nr~vVveli~e-~Ka-~GaAlvGIFHDeevre~vadR~ 222 (235)
T COG4778 183 LDATNRAVVVELIRE-AKA-RGAALVGIFHDEEVREAVADRL 222 (235)
T ss_pred ccccchHHHHHHHHH-HHh-cCceEEEeeccHHHHHHHhhhe
Confidence 999887666443333 333 5999999999998875 55654
No 373
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.43 E-value=3.2e-13 Score=125.39 Aligned_cols=139 Identities=16% Similarity=0.120 Sum_probs=99.8
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhh----------------------hhhhcccc-------------
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV----------------------FLAQIGCF------------- 584 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~----------------------~laq~g~~------------- 584 (813)
...-++++++.+|+++-|.||+|||||||+--+++.. --.|+|..
T Consensus 16 cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg 95 (213)
T COG4136 16 CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVG 95 (213)
T ss_pred eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccc
Confidence 3444889999999999999999999999998775321 01123321
Q ss_pred ------ccCC---ccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHH
Q psy5289 585 ------VPCD---SATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMAC 654 (813)
Q Consensus 585 ------vpa~---~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~ 654 (813)
+|+. .++-...+..++++|+..-......+.+++.+-...+++ ....|.+++||||++.+|..-+.....
T Consensus 96 ~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~ 175 (213)
T COG4136 96 QNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQ 175 (213)
T ss_pred cceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHH
Confidence 1111 112223456788888888888888899988776555554 468999999999999999876666655
Q ss_pred HHHHHHHhcCCCEEEEEcCChHHHh
Q psy5289 655 SIARELASHRQPFTLFATHFHEIAL 679 (813)
Q Consensus 655 ~i~~~l~~~~~~~~l~~TH~~el~~ 679 (813)
.+...+.. .|..++.+|||++-..
T Consensus 176 wVFs~~r~-agiPtv~VTHD~~Dvp 199 (213)
T COG4136 176 WVFSEVRA-AGIPTVQVTHDLQDVP 199 (213)
T ss_pred HHHHHHHh-cCCCeEEEecccccCC
Confidence 56666665 6999999999986543
No 374
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.43 E-value=1.4e-12 Score=168.63 Aligned_cols=173 Identities=12% Similarity=0.085 Sum_probs=114.9
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------hhccccccCCcc--c
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------AQIGCFVPCDSA--T 591 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------aq~g~~vpa~~~--~ 591 (813)
.+.+++...-+- .+..++.++++|++++|++++|+||||||||||++++++.... ...-.++|.+.. .
T Consensus 636 ~i~~~~~~~~~~---~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~ 712 (1522)
T TIGR00957 636 SITVHNATFTWA---RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQN 712 (1522)
T ss_pred cEEEEEeEEEcC---CCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccC
Confidence 466666543321 1124689999999999999999999999999999999654321 111124444321 0
Q ss_pred hhHHH--------------HHHHhcCCchh-----------HhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q psy5289 592 ISVVD--------------QIFTRVGAADS-----------QYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTS 645 (813)
Q Consensus 592 ~~~~d--------------~i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd 645 (813)
-++.+ ++....++.+. +......+|++++++..++++ ..+|+++|||||++++|
T Consensus 713 ~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD 792 (1522)
T TIGR00957 713 DSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792 (1522)
T ss_pred CcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 11111 12111122111 223345788888887776665 58999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEE
Q psy5289 646 TFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 646 ~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~ 696 (813)
+..+..+...+.+......++|+|++||+.+....+|++..+.+|++...+
T Consensus 793 ~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g 843 (1522)
T TIGR00957 793 AHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMG 843 (1522)
T ss_pred HHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeC
Confidence 988877766665421111378999999999888888888888888876544
No 375
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.41 E-value=4.5e-13 Score=171.43 Aligned_cols=157 Identities=10% Similarity=0.034 Sum_probs=107.5
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh-----h--------------h----hccccccCCcc---chh
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-----L--------------A----QIGCFVPCDSA---TIS 593 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~-----l--------------a----q~g~~vpa~~~---~~~ 593 (813)
.|.+++++...+|++++|+||||||||||||++++... . . +.-.+++.... .++
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT 154 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT 154 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence 46779999999999999999999999999999976420 0 0 00123332210 001
Q ss_pred -----------------------------HHHHHHHhcCCchhHhhc-----cchhHHHHHHHHHHHH-hCCCCcEEEEe
Q psy5289 594 -----------------------------VVDQIFTRVGAADSQYRG-----ISTFMMEMKETATVIK-KCTENSLVIID 638 (813)
Q Consensus 594 -----------------------------~~d~i~~~~~~~d~~~~~-----~s~f~~e~~~~~~il~-~~~~~~LlllD 638 (813)
..+.++..+|+.+..... ...+|++++++..|.+ .+++|+++++|
T Consensus 155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD 234 (1394)
T TIGR00956 155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD 234 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence 112345556655433221 2456776666555554 56899999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCCh--HHHhhcCCCCceEeeEEEEEEE
Q psy5289 639 ELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFH--EIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 639 Ep~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~--el~~~~~~~~~v~~~~~~~~~~ 697 (813)
|||+|+|+.....+.. +++.+.+..|.++|++||+. ++.+++|++..+.+|++...+.
T Consensus 235 EPTsgLD~~~~~~i~~-~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 235 NATRGLDSATALEFIR-ALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred CCCCCcCHHHHHHHHH-HHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 9999999998888755 55566653589999999994 5677889888888887765543
No 376
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.41 E-value=1.7e-13 Score=130.38 Aligned_cols=152 Identities=12% Similarity=0.091 Sum_probs=110.0
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhhhh--------------------------hhhhcc-------------cc
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV--------------------------FLAQIG-------------CF 584 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~--------------------------~laq~g-------------~~ 584 (813)
.++.....|+++-++|||||||||+|-.++++. +++|.- .+
T Consensus 17 plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~ 96 (248)
T COG4138 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH 96 (248)
T ss_pred ccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc
Confidence 345556779999999999999999998886542 333322 12
Q ss_pred ccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-------C-CCCcEEEEeCCCCCCChhhHHHHHHHH
Q psy5289 585 VPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-------C-TENSLVIIDELGRGTSTFDGFGMACSI 656 (813)
Q Consensus 585 vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-------~-~~~~LlllDEp~~Gtd~~d~~~i~~~i 656 (813)
+|+ ....+.++.|...+++.|.+.+..+.++++..+...+... + ....|+|+|||-+++|.....++ .++
T Consensus 97 qP~-~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL-drl 174 (248)
T COG4138 97 QPD-KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL-DRL 174 (248)
T ss_pred Cch-HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH-HHH
Confidence 344 2334456778888899999999999998877666554443 1 23469999999999998765555 778
Q ss_pred HHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEEC
Q psy5289 657 ARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 657 ~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~~ 698 (813)
+++++. .|.+||+++||..-+ +-+++.--++.|.+.+.+..
T Consensus 175 l~~~c~-~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~ 216 (248)
T COG4138 175 LSALCQ-QGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRR 216 (248)
T ss_pred HHHHHh-CCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecch
Confidence 899987 799999999996544 45566555677777665543
No 377
>PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the connector domain (domain 2) found in proteins of the MutS family. The structure of the MutS connector domain consists of a parallel beta-sheet surrounded by four alpha helices, which is similar to the structure of the Holliday junction resolvase ruvC.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 2WTU_A ....
Probab=99.41 E-value=1.5e-12 Score=124.24 Aligned_cols=123 Identities=23% Similarity=0.375 Sum_probs=88.8
Q ss_pred CCeEEEEEEECCCCeEEeeecCCchhHHHHHHHHHhcCCcEEEeCCCCCCcch-hHHHHhhhcCCeeeeccCCCCCChhH
Q psy5289 86 TNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNK-NKIVTILDRNKVCMTGRKKNEFSEED 164 (813)
Q Consensus 86 ~~~vGiA~~D~stge~~~~ef~D~~~~~~L~s~L~~~~P~Eili~~~~~~~~~-~~l~~~l~~~~~~i~~~~~~~F~~~~ 164 (813)
.+.+|+||+|+|||+|.+++|.| +++|.+.|.+++|+|||++++ ..+.. ......+......++..+.+.|+...
T Consensus 12 ~~~~gla~~D~sTGe~~~~~~~d---~~~L~~~L~~~~P~EIi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (137)
T PF05188_consen 12 EDSYGLAYIDLSTGEFYVTEFED---YSELKSELARLSPREIIIPEG-FSSSDISALLSSLKNSFFKVTETPSWYFDSEF 87 (137)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEC---HHHHHHHHHHH-ESEEEEETT-CSHHHHHHHHHCCTTTCCEEEEETCGGGSHHH
T ss_pred CCEEEEEEEECCCCEEEEEEeCC---HHHHHHHHHhcCCeEEEEcCC-CcccccchhhhhhccccceeeecchhhhhhHH
Confidence 45699999999999999999997 899999999999999999974 21111 11222233334456666778888888
Q ss_pred HHHHHHHhhccccchhhhcccccc-ccchhHHHHHHHHHHHHHHhcCCCCCCcc
Q psy5289 165 LMQDVNRLVRFDDSELKNARLLPE-MCLTTATHCLRSLINYLELMNNEDNMNQF 217 (813)
Q Consensus 165 ~~~~L~~l~~~~~~~~~~~~~l~~-~~~~~a~~A~gaLL~YL~~~~~~~~~~~~ 217 (813)
..+.+.+.++. ....++.. ..++.+++|+|+||+||+.++.....+|+
T Consensus 88 ~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~Al~all~Yl~~t~~~~~l~hi 136 (137)
T PF05188_consen 88 ASEDIEEQFGV-----ADLDGFGLEEDKELALSALGALLKYLEETQKSENLSHI 136 (137)
T ss_dssp HHHHHHHHCTS-----SSTCCCTTGGGGHHHHHHHHHHHHHHHHTTTCCCCTTC
T ss_pred HHHHHHHhhcc-----ccccccCccCCCHHHHHHHHHHHHHHHHHCccccccCC
Confidence 88888887752 11223322 45788999999999999999976345443
No 378
>PLN03140 ABC transporter G family member; Provisional
Probab=99.41 E-value=3.7e-13 Score=171.68 Aligned_cols=157 Identities=13% Similarity=0.122 Sum_probs=107.1
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--------------------hccccccCCcc---chh---
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--------------------QIGCFVPCDSA---TIS--- 593 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--------------------q~g~~vpa~~~---~~~--- 593 (813)
.|.+++++.+.+|++++|+||||||||||||++++..... +.-.+++.... .++
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 258 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHH
Confidence 3677999999999999999999999999999997542100 00112222210 000
Q ss_pred ----------------------------------------------------HHHHHHHhcCCchhH-----hhccchhH
Q psy5289 594 ----------------------------------------------------VVDQIFTRVGAADSQ-----YRGISTFM 616 (813)
Q Consensus 594 ----------------------------------------------------~~d~i~~~~~~~d~~-----~~~~s~f~ 616 (813)
.++.++..+|+.+.. ......+|
T Consensus 259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS 338 (1470)
T PLN03140 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS 338 (1470)
T ss_pred HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence 123345556654322 12234566
Q ss_pred HHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCCh--HHHhhcCCCCceEeeEEE
Q psy5289 617 MEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFH--EIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 617 ~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~--el~~~~~~~~~v~~~~~~ 693 (813)
++++++..+.. .+.+|+++++|||++|+|+.....+.. +++.+.+..|.|+|++||++ ++..++|++..+.+|++.
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~-~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK-CLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHH-HHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 66666555544 468999999999999999998888865 44455543588999999984 677899998888888876
Q ss_pred EEEE
Q psy5289 694 ALEQ 697 (813)
Q Consensus 694 ~~~~ 697 (813)
..+.
T Consensus 418 y~G~ 421 (1470)
T PLN03140 418 YQGP 421 (1470)
T ss_pred EeCC
Confidence 6544
No 379
>PLN03232 ABC transporter C family member; Provisional
Probab=99.39 E-value=4.6e-12 Score=163.78 Aligned_cols=173 Identities=10% Similarity=0.012 Sum_probs=116.8
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--------hccccccCCccc-
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--------QIGCFVPCDSAT- 591 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--------q~g~~vpa~~~~- 591 (813)
.+.+++...-+-. ....++.+|++|++++|+.++|+||+|||||||++.+.+..... +.-.+||++..-
T Consensus 614 ~I~~~~vsF~y~~--~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf 691 (1495)
T PLN03232 614 AISIKNGYFSWDS--KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIF 691 (1495)
T ss_pred cEEEEeeEEEcCC--CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccc
Confidence 4666665322110 11257899999999999999999999999999999986432211 111345544210
Q ss_pred -hhH--------------HHHHHHhcCCchhHh-----------hccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q psy5289 592 -ISV--------------VDQIFTRVGAADSQY-----------RGISTFMMEMKETATVIKK-CTENSLVIIDELGRGT 644 (813)
Q Consensus 592 -~~~--------------~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gt 644 (813)
-++ ..+++...++.+++. .+-..+|++++|+..++++ ..+|+++|||||++++
T Consensus 692 ~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaL 771 (1495)
T PLN03232 692 NATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSAL 771 (1495)
T ss_pred cccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 011 122233333333322 2223578888877766665 5899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEE
Q psy5289 645 STFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 645 d~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~ 697 (813)
|+..+..+...++.... .+.|+|++||..+....+|++..+.+|++...++
T Consensus 772 D~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt 822 (1495)
T PLN03232 772 DAHVAHQVFDSCMKDEL--KGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGT 822 (1495)
T ss_pred CHHHHHHHHHHHhhhhh--cCCEEEEEECChhhHHhCCEEEEEeCCEEEEecC
Confidence 99887777666555443 3789999999998888899888888888765543
No 380
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.39 E-value=1.4e-12 Score=132.75 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=83.8
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------hhcccc------ccCC---c-cchhHH--HH
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------AQIGCF------VPCD---S-ATISVV--DQ 597 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------aq~g~~------vpa~---~-~~~~~~--d~ 597 (813)
++.++.++| +.+|+||||+||||+|.++.....- -+.|.. +... . ...... +.
T Consensus 14 ~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T cd03276 14 HLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDM 92 (198)
T ss_pred eeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHH
Confidence 344444443 8899999999999999998532110 001100 0000 0 001001 12
Q ss_pred HHHhcCCchhHhhccchhHHHHHHHHHHHHh-----CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc-CCCEEEEE
Q psy5289 598 IFTRVGAADSQYRGISTFMMEMKETATVIKK-----CTENSLVIIDELGRGTSTFDGFGMACSIARELASH-RQPFTLFA 671 (813)
Q Consensus 598 i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-----~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~-~~~~~l~~ 671 (813)
+...+...+.......+++.++++...+... +.+|+++|+|||++|+|+.....+...+.+...++ .+++++++
T Consensus 93 ~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~ 172 (198)
T cd03276 93 ARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFIT 172 (198)
T ss_pred HHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2222222444455677888888887666543 37999999999999999988777766455443321 24689999
Q ss_pred cCChHHHhhcCC
Q psy5289 672 THFHEIALLSRV 683 (813)
Q Consensus 672 TH~~el~~~~~~ 683 (813)
||+++...-.++
T Consensus 173 th~~~~i~~~d~ 184 (198)
T cd03276 173 PQDISGLASSDD 184 (198)
T ss_pred CCcccccccccc
Confidence 999876654444
No 381
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.39 E-value=8.4e-13 Score=156.08 Aligned_cols=159 Identities=15% Similarity=0.129 Sum_probs=111.1
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh---------------------hhhhccccccCCccch--hH
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV---------------------FLAQIGCFVPCDSATI--SV 594 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~---------------------~laq~g~~vpa~~~~~--~~ 594 (813)
+.++.++++|.+++|+.++|+||+||||||+++.+.... +..+++ +||++..-+ ++
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~-~V~Qd~~LF~~TI 419 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG-IVSQDPLLFSGTI 419 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc-EEcccceeecccH
Confidence 357899999999999999999999999999999985321 123344 666543211 11
Q ss_pred H---------------HHHHHhcCCchh-----------HhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChh
Q psy5289 595 V---------------DQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTF 647 (813)
Q Consensus 595 ~---------------d~i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~ 647 (813)
. .+.....++.|. +..+-+.+|++.+|+..+++. ..+|+++||||||+.+|+.
T Consensus 420 ~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~ 499 (567)
T COG1132 420 RENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTE 499 (567)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHH
Confidence 1 111222222222 222335678888777666665 5889999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCe
Q psy5289 648 DGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDN 700 (813)
Q Consensus 648 d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~ 700 (813)
.-..+..++. .+.+ +.|+++++|.+.....+|++..+.+|++...++.++
T Consensus 500 tE~~I~~~l~-~l~~--~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~e 549 (567)
T COG1132 500 TEALIQDALK-KLLK--GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEE 549 (567)
T ss_pred hHHHHHHHHH-HHhc--CCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHH
Confidence 8777766555 3443 568999999988888899999999999776655433
No 382
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.39 E-value=1.8e-12 Score=136.49 Aligned_cols=74 Identities=11% Similarity=0.067 Sum_probs=56.2
Q ss_pred hccchhHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCC
Q psy5289 610 RGISTFMMEMKETATVIKKC-----TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVI 684 (813)
Q Consensus 610 ~~~s~f~~e~~~~~~il~~~-----~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~ 684 (813)
....++++++++...+.+.. .+|+++|+|||++|+|+.....+.. .+..+.+ +.++|++||..++..+++++
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~-~l~~~~~--~~~ii~~~h~~~~~~~~d~i 230 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVAN-MIKELSD--GAQFITTTFRPELLEVADKF 230 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHH-HHHHHhC--CCEEEEEecCHHHHhhCCEE
Confidence 45577888888877666654 3579999999999999987776644 4444543 78889999998888888876
Q ss_pred Cc
Q psy5289 685 PT 686 (813)
Q Consensus 685 ~~ 686 (813)
..
T Consensus 231 ~~ 232 (243)
T cd03272 231 YG 232 (243)
T ss_pred EE
Confidence 43
No 383
>KOG0055|consensus
Probab=99.38 E-value=1.4e-12 Score=157.22 Aligned_cols=176 Identities=14% Similarity=0.118 Sum_probs=117.3
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh---------------------hh
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV---------------------FL 578 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~---------------------~l 578 (813)
+.+++++....+... ....|.++++|.++.|+.++|+||+||||||+++.+.... +.
T Consensus 349 g~ief~nV~FsYPsR--pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr 426 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSR--PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLR 426 (1228)
T ss_pred cceEEEEEEecCCCC--CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHH
Confidence 457777665544331 2357999999999999999999999999999999984221 12
Q ss_pred hhccccccCCcc--chhHHHH---------------HHHhcCCchhHh-----------hccchhHHHHHHHHHHHHh-C
Q psy5289 579 AQIGCFVPCDSA--TISVVDQ---------------IFTRVGAADSQY-----------RGISTFMMEMKETATVIKK-C 629 (813)
Q Consensus 579 aq~g~~vpa~~~--~~~~~d~---------------i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~~-~ 629 (813)
.++|. |-++.. ..++.+. .....++.+-+. .+--+++++++|+..|++. +
T Consensus 427 ~~igl-V~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv 505 (1228)
T KOG0055|consen 427 SQIGL-VSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV 505 (1228)
T ss_pred hhcCe-eeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence 23332 111100 0011111 111111111111 1112467888887777766 5
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCeE
Q psy5289 630 TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNL 701 (813)
Q Consensus 630 ~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i 701 (813)
.+|+++||||||+++|+.+.. +.+..++...+ |.|+|+++|.+.-.+-+|.+..+.+|++...++.+++
T Consensus 506 ~~P~ILLLDEaTSaLD~~se~-~Vq~ALd~~~~--grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~EL 574 (1228)
T KOG0055|consen 506 RNPKILLLDEATSALDAESER-VVQEALDKASK--GRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDEL 574 (1228)
T ss_pred hCCCEEEecCcccccCHHHHH-HHHHHHHHhhc--CCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHH
Confidence 899999999999999997654 44555666554 7899999999988888999888999999877766555
No 384
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.38 E-value=8.5e-13 Score=134.95 Aligned_cols=75 Identities=16% Similarity=-0.009 Sum_probs=54.8
Q ss_pred hhccchhHHHHHHH-------HHHHHhCCCCcEEEEeCCCCCCChhhHH-HHHHHHHHHHHhcCCCEEEEEcCChHHHhh
Q psy5289 609 YRGISTFMMEMKET-------ATVIKKCTENSLVIIDELGRGTSTFDGF-GMACSIARELASHRQPFTLFATHFHEIALL 680 (813)
Q Consensus 609 ~~~~s~f~~e~~~~-------~~il~~~~~~~LlllDEp~~Gtd~~d~~-~i~~~i~~~l~~~~~~~~l~~TH~~el~~~ 680 (813)
....+.++.++++. +.+...+.+|+++|+|||++|+|+.... .+.. ++..+.+..+.++|++||++++...
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~-~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAE-IIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHH-HHHHHHhccCCEEEEEEecHHHHhh
Confidence 44567788777774 2233346899999999999999998776 5644 5555554237899999999988776
Q ss_pred cCCC
Q psy5289 681 SRVI 684 (813)
Q Consensus 681 ~~~~ 684 (813)
++++
T Consensus 189 ~d~i 192 (204)
T cd03240 189 ADHI 192 (204)
T ss_pred CCEE
Confidence 6644
No 385
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.38 E-value=1.7e-12 Score=166.48 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=62.0
Q ss_pred cchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEee
Q psy5289 612 ISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNV 690 (813)
Q Consensus 612 ~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~ 690 (813)
.+.+|++++|+..|++. +.+|+++||||||+++|+.....+.. .++.+.+..|.|+|++||+++....+|++..+.+|
T Consensus 577 g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~-~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 577 ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQK-TINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH-HHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 45788888887776665 68999999999999999987666644 44445432489999999999888888888778776
Q ss_pred E
Q psy5289 691 Q 691 (813)
Q Consensus 691 ~ 691 (813)
+
T Consensus 656 ~ 656 (1466)
T PTZ00265 656 E 656 (1466)
T ss_pred c
Confidence 3
No 386
>KOG0061|consensus
Probab=99.37 E-value=1.9e-12 Score=152.64 Aligned_cols=158 Identities=17% Similarity=0.208 Sum_probs=119.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hhhccccccCCcc--------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LAQIGCFVPCDSA-------- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------laq~g~~vpa~~~-------- 590 (813)
..+.++++....+|++++|.||.||||||||+++++-.. +..+-+||+.+..
T Consensus 43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~ 122 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVR 122 (613)
T ss_pred ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHH
Confidence 679999999999999999999999999999999964321 1112234433321
Q ss_pred -------------------chhHHHHHHHhcCCchhHhhccc-----hh-HHHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Q psy5289 591 -------------------TISVVDQIFTRVGAADSQYRGIS-----TF-MMEMKETATVIKKCTENSLVIIDELGRGTS 645 (813)
Q Consensus 591 -------------------~~~~~d~i~~~~~~~d~~~~~~s-----~f-~~e~~~~~~il~~~~~~~LlllDEp~~Gtd 645 (813)
+-..++.+...+|+.+....-.+ .. .+|.+|++.++..+++|+++++||||+|+|
T Consensus 123 EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLD 202 (613)
T KOG0061|consen 123 ETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLD 202 (613)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcc
Confidence 12245667777776532222221 12 368888888889999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEEcCCh--HHHhhcCCCCceEeeEEEEEEEC
Q psy5289 646 TFDGFGMACSIARELASHRQPFTLFATHFH--EIALLSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 646 ~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~--el~~~~~~~~~v~~~~~~~~~~~ 698 (813)
...+..+.. +++.++++ |++||++=|.+ ++..+.|++..+.+|++...+..
T Consensus 203 S~sA~~vv~-~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 203 SFSALQVVQ-LLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred hhhHHHHHH-HHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 999888855 67778874 99999999984 78888999888889988877754
No 387
>PLN03130 ABC transporter C family member; Provisional
Probab=99.37 E-value=9.5e-12 Score=161.09 Aligned_cols=172 Identities=9% Similarity=0.019 Sum_probs=116.6
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh--------ccccccCCccc-
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ--------IGCFVPCDSAT- 591 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq--------~g~~vpa~~~~- 591 (813)
.+.+++..--+-. .+..++.++++|++++|+.++|+||+|||||||++.+.+...... .-.+||++..-
T Consensus 614 ~I~~~nvsf~y~~--~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lf 691 (1622)
T PLN03130 614 AISIKNGYFSWDS--KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIF 691 (1622)
T ss_pred ceEEEeeEEEccC--CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccC
Confidence 4677665432210 112578999999999999999999999999999999865432211 11345544210
Q ss_pred -hhH--------------HHHHHHhcCCchhHh-----------hccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q psy5289 592 -ISV--------------VDQIFTRVGAADSQY-----------RGISTFMMEMKETATVIKK-CTENSLVIIDELGRGT 644 (813)
Q Consensus 592 -~~~--------------~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gt 644 (813)
-++ ..+.+...++.+++. .+-..+|+|++|+..++++ ..+++++|||||++++
T Consensus 692 ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSAL 771 (1622)
T PLN03130 692 NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771 (1622)
T ss_pred CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 011 122233333333322 2234678888777666665 5899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEE
Q psy5289 645 STFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 645 d~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~ 696 (813)
|+..+..+...++.... .++|+|++||..+....+|++..+.+|++...+
T Consensus 772 D~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~G 821 (1622)
T PLN03130 772 DAHVGRQVFDKCIKDEL--RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEG 821 (1622)
T ss_pred CHHHHHHHHHHHhhHHh--cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeC
Confidence 99887777665555443 378999999999888889988888888876544
No 388
>PLN03232 ABC transporter C family member; Provisional
Probab=99.36 E-value=7.8e-12 Score=161.65 Aligned_cols=175 Identities=14% Similarity=0.130 Sum_probs=117.1
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hh
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LA 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------la 579 (813)
+.|++++..--+ ..+..+|.+|++|++++|+.++|+||+||||||+++.+..+.- +.
T Consensus 1233 g~I~f~nVsf~Y---~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR 1309 (1495)
T PLN03232 1233 GSIKFEDVHLRY---RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLR 1309 (1495)
T ss_pred CcEEEEEEEEEE---CCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHH
Confidence 346666643222 1122479999999999999999999999999999999854311 11
Q ss_pred hccccccCCccc----------------hhHHHHHHHhcCCchhH-----------hhccchhHHHHHHHHHHHHh-CCC
Q psy5289 580 QIGCFVPCDSAT----------------ISVVDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKK-CTE 631 (813)
Q Consensus 580 q~g~~vpa~~~~----------------~~~~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~~-~~~ 631 (813)
+.-++||++..- -.-+.+.+.+.++.+.+ ..+-+.+|+|++|+..+++. +.+
T Consensus 1310 ~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~ 1389 (1495)
T PLN03232 1310 RVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRR 1389 (1495)
T ss_pred hhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 112345544310 01112234444444433 22335688888887776665 588
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCe
Q psy5289 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDN 700 (813)
Q Consensus 632 ~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~ 700 (813)
|+++||||||+++|+.....+-. .++... .++|+|++||.++....+|++..+.+|++...++.++
T Consensus 1390 ~~ILILDEATSaLD~~Te~~Iq~-~L~~~~--~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~e 1455 (1495)
T PLN03232 1390 SKILVLDEATASVDVRTDSLIQR-TIREEF--KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQE 1455 (1495)
T ss_pred CCEEEEECCcccCCHHHHHHHHH-HHHHHc--CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999976555533 333332 4799999999998888899988888988876544433
No 389
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.35 E-value=1.6e-11 Score=144.13 Aligned_cols=148 Identities=15% Similarity=0.094 Sum_probs=96.5
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhc
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQI 581 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~ 581 (813)
.+.+++....+- +.+.+.+|++|++++|+.++|+||+||||||+++.+...... .+.
T Consensus 334 ~I~~~~vsf~Y~----~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~ 409 (529)
T TIGR02868 334 TLELRDLSFGYP----GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRR 409 (529)
T ss_pred eEEEEEEEEecC----CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhh
Confidence 466666543331 123589999999999999999999999999999998543210 011
Q ss_pred cccccCCccch--hH---------------HHHHHHhcCCchhHhh-----------ccchhHHHHHHHHHHHH-hCCCC
Q psy5289 582 GCFVPCDSATI--SV---------------VDQIFTRVGAADSQYR-----------GISTFMMEMKETATVIK-KCTEN 632 (813)
Q Consensus 582 g~~vpa~~~~~--~~---------------~d~i~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~-~~~~~ 632 (813)
-.+||.+..-+ ++ +.+.+...++.+.+.. +-..+|++.+|+..+++ ...+|
T Consensus 410 i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~ 489 (529)
T TIGR02868 410 ISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA 489 (529)
T ss_pred eEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC
Confidence 23555543210 11 1223444454443322 22347777776655555 46899
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCCh
Q psy5289 633 SLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFH 675 (813)
Q Consensus 633 ~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~ 675 (813)
+++||||||+++|+.....+...+.+ +. .++|+|++||..
T Consensus 490 ~iliLDE~TSaLD~~te~~I~~~l~~-~~--~~~TvIiItHrl 529 (529)
T TIGR02868 490 PILLLDEPTEHLDAGTESELLEDLLA-AL--SGKTVVVITHHL 529 (529)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHH-hc--CCCEEEEEecCC
Confidence 99999999999999876666554443 32 478999999973
No 390
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.35 E-value=4.1e-12 Score=134.39 Aligned_cols=76 Identities=5% Similarity=-0.006 Sum_probs=57.8
Q ss_pred hhccchhHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCC
Q psy5289 609 YRGISTFMMEMKETATVIKKC-----TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRV 683 (813)
Q Consensus 609 ~~~~s~f~~e~~~~~~il~~~-----~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~ 683 (813)
......+++++++...+.+.. .+|+++|+|||++|+|+.....+.. ++..+. .|.++|++||..++.+.+|+
T Consensus 161 ~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~-~l~~~~--~g~~ii~iSH~~~~~~~~d~ 237 (251)
T cd03273 161 KESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGR-MIKTHF--KGSQFIVVSLKEGMFNNANV 237 (251)
T ss_pred cccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHc--CCCEEEEEECCHHHHHhCCE
Confidence 345667888888876666542 5779999999999999988776654 444444 37899999999999988887
Q ss_pred CCce
Q psy5289 684 IPTF 687 (813)
Q Consensus 684 ~~~v 687 (813)
+..|
T Consensus 238 v~~~ 241 (251)
T cd03273 238 LFRT 241 (251)
T ss_pred EEEE
Confidence 6544
No 391
>KOG0927|consensus
Probab=99.35 E-value=1.1e-11 Score=136.73 Aligned_cols=149 Identities=17% Similarity=0.245 Sum_probs=94.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh--hhhhccccc------------------cCCcc--chh---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV--FLAQIGCFV------------------PCDSA--TIS--- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~--~laq~g~~v------------------pa~~~--~~~--- 593 (813)
..+..|+.|+...|+-++|+|||||||||+|++|+.-- +..+++++. ++... ++.
T Consensus 88 ~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~ 167 (614)
T KOG0927|consen 88 VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLA 167 (614)
T ss_pred ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHH
Confidence 34567999999999999999999999999999996421 112222211 10000 000
Q ss_pred -------------HHHH-------------------HHHhcC-CchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeC
Q psy5289 594 -------------VVDQ-------------------IFTRVG-AADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDE 639 (813)
Q Consensus 594 -------------~~d~-------------------i~~~~~-~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDE 639 (813)
-++. ++.-+| ....+.+....||++.++++.+.+. ..+|+|++|||
T Consensus 168 E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDE 247 (614)
T KOG0927|consen 168 EDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDE 247 (614)
T ss_pred HHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecC
Confidence 0011 122222 2333444555677776665555544 58999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeE
Q psy5289 640 LGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQ 691 (813)
Q Consensus 640 p~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~ 691 (813)
||.|+|.. +++| +-++|.+....++++++|+.+... +|.++..+.++.
T Consensus 248 PtnhLDle---A~~w-Lee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kk 296 (614)
T KOG0927|consen 248 PTNHLDLE---AIVW-LEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKK 296 (614)
T ss_pred CccCCCHH---HHHH-HHHHHHhccCceEEEEecchhhhhhHhhhhheecccc
Confidence 98888874 4555 667777633337899999987664 777766665544
No 392
>PLN03130 ABC transporter C family member; Provisional
Probab=99.35 E-value=5.8e-12 Score=163.04 Aligned_cols=176 Identities=13% Similarity=0.125 Sum_probs=118.7
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hh
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LA 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------la 579 (813)
+.|++++..--+ ..+..+|.+|++|++.+|+.++|+||+||||||+++.+..+.- +.
T Consensus 1236 g~I~f~nVsf~Y---~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR 1312 (1622)
T PLN03130 1236 GSIKFEDVVLRY---RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLR 1312 (1622)
T ss_pred CcEEEEEEEEEe---CCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHH
Confidence 457776653222 1122478999999999999999999999999999999854311 11
Q ss_pred hccccccCCccch----------------hHHHHHHHhcCCchhH-----------hhccchhHHHHHHHHHHHHh-CCC
Q psy5289 580 QIGCFVPCDSATI----------------SVVDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKK-CTE 631 (813)
Q Consensus 580 q~g~~vpa~~~~~----------------~~~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~~-~~~ 631 (813)
+.-++||++..-+ .-+...+.+.++.+.+ ..+-+.+|+|++|+..++++ +.+
T Consensus 1313 ~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1313 KVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred hccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 1123455443110 0111233344443333 23335788888887777765 588
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCeE
Q psy5289 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNL 701 (813)
Q Consensus 632 ~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i 701 (813)
|+++||||||+++|+..-..+.. .++... .++|+|+++|..+...-+|++..+.+|++...+..+++
T Consensus 1393 p~ILILDEATSaLD~~Te~~Iq~-~I~~~~--~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eL 1459 (1622)
T PLN03130 1393 SKILVLDEATAAVDVRTDALIQK-TIREEF--KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENL 1459 (1622)
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-HHHHHC--CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999876555433 333333 48999999999998888999999999999876654443
No 393
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.34 E-value=5.1e-12 Score=133.31 Aligned_cols=70 Identities=13% Similarity=0.043 Sum_probs=54.1
Q ss_pred chhHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCC
Q psy5289 613 STFMMEMKETATVIKKC-----TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVI 684 (813)
Q Consensus 613 s~f~~e~~~~~~il~~~-----~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~ 684 (813)
..+++++++...+.+.. .+|+++|+|||++|+|+.....+.. ++..+.+ .|.++|++||+.++...++++
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~-~i~~~~~-~g~~vi~isH~~~~~~~~d~i 228 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVAS-YIREQAG-PNFQFIVISLKEEFFSKADAL 228 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHH-HHHHhcc-CCcEEEEEECCHHHHhhCCeE
Confidence 56777777766666543 3589999999999999988777755 4445554 488999999999988887765
No 394
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=99.34 E-value=6.2e-13 Score=122.61 Aligned_cols=76 Identities=25% Similarity=0.254 Sum_probs=55.5
Q ss_pred Cccccc--ccCCCCCeEEEEecCCceeehhHHHHHHHH-hcCccccccccCCCCCCcceEEeccCChHHHHHHHHhccCc
Q psy5289 2 KFYLFF--FPQKSKTTIRFFNRVEFYCVHGEDAELIQR-KSNVVYLVKTMGQKDKTLETVLVNKSNLSCFSHILCVISED 78 (813)
Q Consensus 2 ~f~~~~--lk~k~~d~ilffr~GDFYe~f~eDA~~~a~-~t~~~~~~~~~g~~~~gvp~~~~~~~~~~~yi~~L~~~~~~ 78 (813)
+|.++| +|++|||+|+|||+|||||+|++||+.+|+ +.......+ .+.. .++|++.++..+++.|+++|+..|-.
T Consensus 2 p~~~~y~~lk~k~~d~i~lf~~G~fYe~y~~DA~~~a~~l~~~~~~~~-~~~~-~~~~~~gfp~~~l~~~l~~Ll~~G~~ 79 (113)
T PF01624_consen 2 PFEQQYWELKEKYPDTIVLFQVGDFYEAYGEDAEFVAEILGLKLSKRK-TGGG-KSVPMAGFPKSQLDKYLKKLLEAGYR 79 (113)
T ss_dssp HHHHHHHHHHCTSTTSEEEEEETTEEEEECHHHHHHHHHHTSSSEEEE-CSSS-ECEEEEEEEGGGHHHHHHHHHHTT-E
T ss_pred hHHHHHHHHHhhCCCeEEEEEcCCEEEEEccCHHHHHHhccceeeecc-cccc-ccccEecccHHHHHHHHHHHHHcCCE
Confidence 466666 999999999999999999999999999999 222100112 1111 12677777777779999999998644
Q ss_pred e
Q psy5289 79 K 79 (813)
Q Consensus 79 ~ 79 (813)
+
T Consensus 80 V 80 (113)
T PF01624_consen 80 V 80 (113)
T ss_dssp E
T ss_pred E
Confidence 3
No 395
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.31 E-value=2.4e-11 Score=129.17 Aligned_cols=171 Identities=15% Similarity=0.107 Sum_probs=119.9
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh-----ccccccCCcc--ch
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-----IGCFVPCDSA--TI 592 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-----~g~~vpa~~~--~~ 592 (813)
..+++++.|..+.+ ++|-.+.+++++..|+++.|+|.||||||||++.+.++.-... -|-+|.++.- .-
T Consensus 321 ~~lelrnvrfay~~----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR 396 (546)
T COG4615 321 KTLELRNVRFAYQD----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYR 396 (546)
T ss_pred cceeeeeeeeccCc----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHH
Confidence 45888888876654 3477888999999999999999999999999999844322111 1223332221 11
Q ss_pred hHHHHHHHhcC-------------------------CchhHhhccchh------HHHHHHHHHHHHhCCCCcEEEEeCCC
Q psy5289 593 SVVDQIFTRVG-------------------------AADSQYRGISTF------MMEMKETATVIKKCTENSLVIIDELG 641 (813)
Q Consensus 593 ~~~d~i~~~~~-------------------------~~d~~~~~~s~f------~~e~~~~~~il~~~~~~~LlllDEp~ 641 (813)
+.+..+|+... +....+-.-..| .++.++++.+++.+-+++++++||--
T Consensus 397 ~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWA 476 (546)
T COG4615 397 KLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWA 476 (546)
T ss_pred HHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhh
Confidence 22333333222 111111111111 15677888888889999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEE
Q psy5289 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 642 ~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~ 695 (813)
+--||.-+......++-.+++ .|+|++.+|||..-...+|+...++||++...
T Consensus 477 ADQDPaFRR~FY~~lLp~LK~-qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 477 ADQDPAFRREFYQVLLPLLKE-QGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred ccCChHHHHHHHHHHhHHHHH-hCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999888887777777776 79999999999877788898888999988643
No 396
>PTZ00243 ABC transporter; Provisional
Probab=99.31 E-value=6.5e-12 Score=162.34 Aligned_cols=157 Identities=14% Similarity=0.110 Sum_probs=110.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hhhccccccCCcc----ch--
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LAQIGCFVPCDSA----TI-- 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------laq~g~~vpa~~~----~~-- 592 (813)
.+|.++++|++.+|+.++|+|++||||||+++.+..+.- +.+.-++||.+.. ++
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIre 1402 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQ 1402 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHH
Confidence 468999999999999999999999999999999854321 1122235555432 11
Q ss_pred ----------hHHHHHHHhcCCchhHh-----------hccchhHHHHHHHHHHHHhC-CC-CcEEEEeCCCCCCChhhH
Q psy5289 593 ----------SVVDQIFTRVGAADSQY-----------RGISTFMMEMKETATVIKKC-TE-NSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 593 ----------~~~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~~~-~~-~~LlllDEp~~Gtd~~d~ 649 (813)
.-+...+...++.+.+. .+-+.+|++++|+..+++.. .+ ++++||||||+++|+..-
T Consensus 1403 NIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te 1482 (1560)
T PTZ00243 1403 NVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALD 1482 (1560)
T ss_pred HhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHH
Confidence 11122344445444332 23357889999887777765 43 799999999999999765
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEEC
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~ 698 (813)
..+.. .+.... .++|+|+++|..+....+|++..+.+|++...+..
T Consensus 1483 ~~Iq~-~L~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~ 1528 (1560)
T PTZ00243 1483 RQIQA-TVMSAF--SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSP 1528 (1560)
T ss_pred HHHHH-HHHHHC--CCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCH
Confidence 55533 333332 37999999999999988999988888888755443
No 397
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.30 E-value=6.5e-12 Score=162.15 Aligned_cols=155 Identities=12% Similarity=0.063 Sum_probs=108.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh-------------------hhhccccccCCccch-------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-------------------LAQIGCFVPCDSATI------- 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~-------------------laq~g~~vpa~~~~~------- 592 (813)
.+|.++++|++.+|+.++|+|++|||||||++++..+.. +.+.-+++|.+..-+
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~N 1311 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHH
Confidence 579999999999999999999999999999999965531 011112445443110
Q ss_pred ---------hHHHHHHHhcCCchhHhh-----------ccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q psy5289 593 ---------SVVDQIFTRVGAADSQYR-----------GISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFG 651 (813)
Q Consensus 593 ---------~~~d~i~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~ 651 (813)
.-+...+.+.++.+.+.. +-+.||+|++|+..+++. +.+++++||||||+++|+..-..
T Consensus 1312 Ldp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~ 1391 (1490)
T TIGR01271 1312 LDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQI 1391 (1490)
T ss_pred hCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHH
Confidence 011224455555443322 223588888877666665 58899999999999999976555
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEE
Q psy5289 652 MACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 652 i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~ 696 (813)
+... +.... .++|+|++||..+....+|++..+.+|++....
T Consensus 1392 I~~~-L~~~~--~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g 1433 (1490)
T TIGR01271 1392 IRKT-LKQSF--SNCTVILSEHRVEALLECQQFLVIEGSSVKQYD 1433 (1490)
T ss_pred HHHH-HHHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeC
Confidence 5333 33332 479999999999888889998888888876443
No 398
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.29 E-value=6.8e-12 Score=133.83 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=109.7
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhh-------hh------------------------hhccccccCC
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV-------FL------------------------AQIGCFVPCD 588 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~-------~l------------------------aq~g~~vpa~ 588 (813)
...++++|+...|+.++|+|.+||||||+=+++..+. +. .-.|+.-|--
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRm 380 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRM 380 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCccc
Confidence 4678999999999999999999999999977763221 10 0022222211
Q ss_pred cc-------------------chhHHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChh
Q psy5289 589 SA-------------------TISVVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTF 647 (813)
Q Consensus 589 ~~-------------------~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~ 647 (813)
.. +...+-..+..+|+. ....+-...||++.+|...|.+. +.+|++|+|||||+.+|-.
T Consensus 381 tV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~S 460 (534)
T COG4172 381 TVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS 460 (534)
T ss_pred CHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHH
Confidence 00 000111234556654 45566678999999988777776 5899999999997777764
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEEE
Q psy5289 648 DGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 648 d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~~ 697 (813)
-...+ -.++..|.++.|.+-||+|||+.... +++++..+++|++...++
T Consensus 461 VQaQv-v~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~ 510 (534)
T COG4172 461 VQAQV-LDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGP 510 (534)
T ss_pred HHHHH-HHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCC
Confidence 44443 45677777778999999999987765 888888899988865544
No 399
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=1.1e-11 Score=150.59 Aligned_cols=95 Identities=15% Similarity=0.089 Sum_probs=70.4
Q ss_pred HHhcCCch-hHhhccchhHHHHHHHHHHHHhCC----CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcC
Q psy5289 599 FTRVGAAD-SQYRGISTFMMEMKETATVIKKCT----ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATH 673 (813)
Q Consensus 599 ~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~~~----~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH 673 (813)
+..+|+.. .+....+++|+++++...+++.+. +|+|+|||||++|+|+.+...+.. ++..+.+ .|.++|++||
T Consensus 812 L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~-~L~~l~~-~G~TVIvi~H 889 (924)
T TIGR00630 812 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLE-VLQRLVD-QGNTVVVIEH 889 (924)
T ss_pred HHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHh-CCCEEEEEeC
Confidence 34456553 356667889998888776666542 589999999999999999888755 4555665 5899999999
Q ss_pred ChHHHhhcCCCCce------EeeEEEEE
Q psy5289 674 FHEIALLSRVIPTF------RNVQVSAL 695 (813)
Q Consensus 674 ~~el~~~~~~~~~v------~~~~~~~~ 695 (813)
++++...++++..+ .+|++.+.
T Consensus 890 ~~~~i~~aD~ii~Lgp~~G~~gG~iv~~ 917 (924)
T TIGR00630 890 NLDVIKTADYIIDLGPEGGDGGGTIVAS 917 (924)
T ss_pred CHHHHHhCCEEEEecCCccCCCCEEEEe
Confidence 99888877766655 45555543
No 400
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.29 E-value=3.3e-11 Score=156.14 Aligned_cols=173 Identities=9% Similarity=0.003 Sum_probs=114.7
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hh
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LA 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------la 579 (813)
+.|.+++..--+- .+..+|.++++|++++|+.++|+||+||||||+++.+..+.- +.
T Consensus 1283 g~I~f~nVsf~Y~---~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR 1359 (1522)
T TIGR00957 1283 GRVEFRNYCLRYR---EDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLR 1359 (1522)
T ss_pred CcEEEEEEEEEeC---CCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHH
Confidence 4566665432221 122469999999999999999999999999999999854311 11
Q ss_pred hccccccCCccch----------------hHHHHHHHhcCCchhH-----------hhccchhHHHHHHHHHHHHh-CCC
Q psy5289 580 QIGCFVPCDSATI----------------SVVDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKK-CTE 631 (813)
Q Consensus 580 q~g~~vpa~~~~~----------------~~~d~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~~-~~~ 631 (813)
..-++||++..-+ .-+...+...++.+.+ ..+-+.+|+|++|+..++++ +.+
T Consensus 1360 ~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1360 FKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred hcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 1123455443100 0111233344443322 22335688888887766665 588
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEEC
Q psy5289 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 632 ~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~ 698 (813)
|+++||||||+++|+..-..+.. .++... .++|+|+++|..+....+|++..+.+|++...+..
T Consensus 1440 ~~ILiLDEaTSalD~~Te~~Iq~-~l~~~~--~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~ 1503 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLETDNLIQS-TIRTQF--EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAP 1503 (1522)
T ss_pred CCEEEEECCcccCCHHHHHHHHH-HHHHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999976544433 333332 47999999999998888999888888888755443
No 401
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.29 E-value=1.4e-11 Score=157.95 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=59.5
Q ss_pred chhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEe
Q psy5289 613 STFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRN 689 (813)
Q Consensus 613 s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~ 689 (813)
..+|++++|+..|+++ +.+|+++||||||+++|+.....+..++ ..+....+.|+|++||..+..+.+|++..+.+
T Consensus 1357 ~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L-~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI-VDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433 (1466)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH-HHHhccCCCEEEEEechHHHHHhCCEEEEEeC
Confidence 4678888887776665 5899999999999999998766665544 33431147899999999999999998877777
No 402
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.29 E-value=9.9e-12 Score=124.17 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=75.9
Q ss_pred eEEEEccCCCChhHHHhhhhhhhhhh-------------hccccccCCccchhHH-HHHHHhcCCchhHhhccchhHHHH
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVSVFLA-------------QIGCFVPCDSATISVV-DQIFTRVGAADSQYRGISTFMMEM 619 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~~~la-------------q~g~~vpa~~~~~~~~-d~i~~~~~~~d~~~~~~s~f~~e~ 619 (813)
+.+|+||||+|||++|.+|....... .-..-.++..+.+.+. +..+.-+--.+. .. -+++++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~-~~---~LS~Ge 99 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKV-EQ---ILSGGE 99 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcC-cc---cCCHHH
Confidence 89999999999999999986532210 0000111122211110 000000000000 00 145566
Q ss_pred HHHHHHHHh-----CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCce
Q psy5289 620 KETATVIKK-----CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTF 687 (813)
Q Consensus 620 ~~~~~il~~-----~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v 687 (813)
++...+.+. ..+|+++|+|||++|+|+.....+.. .+..+.+ .|+++|++||+++....++++..+
T Consensus 100 ~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~-~L~~~~~-~g~tiIiiSH~~~~~~~adrvi~i 170 (178)
T cd03239 100 KSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSD-MIKEMAK-HTSQFIVITLKKEMFENADKLIGV 170 (178)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHh-CCCEEEEEECCHHHHhhCCeEEEE
Confidence 655444443 36899999999999999988777755 4445554 478999999999888777665433
No 403
>KOG0058|consensus
Probab=99.28 E-value=1.6e-11 Score=140.71 Aligned_cols=171 Identities=15% Similarity=0.113 Sum_probs=109.7
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhh--------------------hhh-
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS--------------------VFL- 578 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~--------------------~~l- 578 (813)
+.|++++....+-. .+..+|.+|++|++.+|++++|+|||||||||....+--. .++
T Consensus 464 G~IeF~~VsFaYP~--Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPT--RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred ceEEEEEeeeecCC--CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence 55777665443322 2345799999999999999999999999999999886211 011
Q ss_pred hhccccccCCcc--chhHHHH------------HH---HhcCCch-----------hHhhccchhHHHHHHHHHHHHh-C
Q psy5289 579 AQIGCFVPCDSA--TISVVDQ------------IF---TRVGAAD-----------SQYRGISTFMMEMKETATVIKK-C 629 (813)
Q Consensus 579 aq~g~~vpa~~~--~~~~~d~------------i~---~~~~~~d-----------~~~~~~s~f~~e~~~~~~il~~-~ 629 (813)
.++| +|-.+.- .-++.+. |. ..-++.+ .+...-++++++++|+..|+++ .
T Consensus 542 ~~Ig-~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 542 RKIG-LVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred HHee-eeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 1222 1211110 0001111 11 1111111 1122234678888888777776 5
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEE
Q psy5289 630 TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 630 ~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~ 696 (813)
.+|.++||||-|+.+|...-..+ +..+..+.+ +.|||++.|-..-.+.++++..+..|++...+
T Consensus 621 r~P~VLILDEATSALDaeSE~lV-q~aL~~~~~--~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLV-QEALDRLMQ--GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMG 684 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHH-HHHHHHhhc--CCeEEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence 89999999999999998654443 444555554 68999999999999988887777777776554
No 404
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.27 E-value=6.9e-12 Score=119.70 Aligned_cols=100 Identities=20% Similarity=0.310 Sum_probs=68.1
Q ss_pred cccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc---chh------
Q psy5289 543 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA---TIS------ 593 (813)
Q Consensus 543 n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~---~~~------ 593 (813)
++++|++.+|++++|+||||||||||+|+++..... .+.-.++|.... ...
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~ 81 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENES 81 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHH
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 578999999999999999999999999999654321 111123333311 111
Q ss_pred --HHHHHHHhcCCchhHhhcc----chhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q psy5289 594 --VVDQIFTRVGAADSQYRGI----STFMMEMKETATVIKK-CTENSLVIIDELGR 642 (813)
Q Consensus 594 --~~d~i~~~~~~~d~~~~~~----s~f~~e~~~~~~il~~-~~~~~LlllDEp~~ 642 (813)
.+..++..++..+...... +.+++++++...+++. +.+|+++|||||++
T Consensus 82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 82 DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 2344666777555444444 8888887776655554 68999999999964
No 405
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.24 E-value=1.4e-11 Score=126.66 Aligned_cols=71 Identities=11% Similarity=0.005 Sum_probs=50.4
Q ss_pred ccchhHHHHHHHHHHHHh-----CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC-CEEEEEcCCh-HHHhhcC
Q psy5289 611 GISTFMMEMKETATVIKK-----CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQ-PFTLFATHFH-EIALLSR 682 (813)
Q Consensus 611 ~~s~f~~e~~~~~~il~~-----~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~-~~~l~~TH~~-el~~~~~ 682 (813)
...++++++++++.+... +.+|+++|+|||++|+|+.....+.. ++..+.++.| .++|++||+. +....++
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~-~l~~~~~~~g~~~viiith~~~~~~~~~~ 200 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFD-MLVETACKEGTSQYFLITPKLLPGLNYHE 200 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHH-HHHHHhhcCCCceEEEEchhhccCCcccC
Confidence 446788888887655432 57999999999999999988877755 4444444224 5789999984 4334444
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.24 E-value=2.2e-11 Score=154.37 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=68.8
Q ss_pred HHhcCCchh-HhhccchhHHHHHHHHHHHHhC----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcC
Q psy5289 599 FTRVGAADS-QYRGISTFMMEMKETATVIKKC----TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATH 673 (813)
Q Consensus 599 ~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~~----~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH 673 (813)
+..+|+.+. +.....++|++++|...+++.. .+|+++|||||++|+|+.+...+.. ++..+.+ .|.++|++||
T Consensus 793 L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~-lL~~L~~-~G~TVIiIsH 870 (1809)
T PRK00635 793 LCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIY-VLQSLTH-QGHTVVIIEH 870 (1809)
T ss_pred HHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHh-cCCEEEEEeC
Confidence 445666554 5667788999888877777664 5899999999999999999887755 5556665 5899999999
Q ss_pred ChHHHhhcCCCCceE
Q psy5289 674 FHEIALLSRVIPTFR 688 (813)
Q Consensus 674 ~~el~~~~~~~~~v~ 688 (813)
+++....++++..+.
T Consensus 871 dl~~i~~aDrVi~L~ 885 (1809)
T PRK00635 871 NMHVVKVADYVLELG 885 (1809)
T ss_pred CHHHHHhCCEEEEEc
Confidence 998888888766553
No 407
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.23 E-value=6.1e-11 Score=144.43 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=64.6
Q ss_pred HhcCCch-hHhhccchhHHHHHHHHHHHHh-CCCC---cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC
Q psy5289 600 TRVGAAD-SQYRGISTFMMEMKETATVIKK-CTEN---SLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF 674 (813)
Q Consensus 600 ~~~~~~d-~~~~~~s~f~~e~~~~~~il~~-~~~~---~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~ 674 (813)
..+|+.. .+....+++|++++|...+++. +.+| +++|||||++|+|+.+...+.. ++..+.+ .|.++|++||+
T Consensus 815 ~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~-~L~~l~~-~G~TVIiitH~ 892 (943)
T PRK00349 815 VDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLE-VLHRLVD-KGNTVVVIEHN 892 (943)
T ss_pred HHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHH-HHHHHHh-CCCEEEEEecC
Confidence 3445543 3556678899888887766665 4555 8999999999999999888755 5555665 58999999999
Q ss_pred hHHHhhcCCCCce
Q psy5289 675 HEIALLSRVIPTF 687 (813)
Q Consensus 675 ~el~~~~~~~~~v 687 (813)
++....++++..+
T Consensus 893 ~~~i~~aD~ii~L 905 (943)
T PRK00349 893 LDVIKTADWIIDL 905 (943)
T ss_pred HHHHHhCCEEEEe
Confidence 9888777765544
No 408
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.22 E-value=6.4e-11 Score=126.50 Aligned_cols=157 Identities=17% Similarity=0.107 Sum_probs=110.1
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------------hhccccc--
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------------AQIGCFV-- 585 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------------aq~g~~v-- 585 (813)
...+.++++|++..|+.++|+|.+|||||.....|..+... +.++..+
T Consensus 22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQE 101 (534)
T COG4172 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQE 101 (534)
T ss_pred ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecc
Confidence 45678899999999999999999999999988887432110 0111100
Q ss_pred cCCcc----chh--------------------HHHHHHHhcCCch---hHhhccchhHHHHHHHHHHHHh-CCCCcEEEE
Q psy5289 586 PCDSA----TIS--------------------VVDQIFTRVGAAD---SQYRGISTFMMEMKETATVIKK-CTENSLVII 637 (813)
Q Consensus 586 pa~~~----~~~--------------------~~d~i~~~~~~~d---~~~~~~s~f~~e~~~~~~il~~-~~~~~Llll 637 (813)
|-.+- +++ -.-.++.++|..+ .+..-...+|++.+|...|..+ +++|+|+|.
T Consensus 102 PMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIA 181 (534)
T COG4172 102 PMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIA 181 (534)
T ss_pred cccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEee
Confidence 10000 000 0113456677654 3445566788888877666654 799999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEE
Q psy5289 638 DELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSAL 695 (813)
Q Consensus 638 DEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~ 695 (813)
||||..+|..-...|.. ++..|.++.|..++|+|||..+.. ++|++..+..|.+...
T Consensus 182 DEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 182 DEPTTALDVTVQAQILD-LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred cCCcchhhhhhHHHHHH-HHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeec
Confidence 99999999876666644 666676668999999999988775 7888888888888654
No 409
>KOG0066|consensus
Probab=99.19 E-value=5.2e-11 Score=127.42 Aligned_cols=137 Identities=17% Similarity=0.107 Sum_probs=79.1
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh-h---------hhhccccccC----CccchhHHHHH-----
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV-F---------LAQIGCFVPC----DSATISVVDQI----- 598 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~-~---------laq~g~~vpa----~~~~~~~~d~i----- 598 (813)
..+....++|.++-.+-++|+||||.||||||+.+.+-. . --++|.|--. -.++-+.+.-+
T Consensus 599 qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN 678 (807)
T KOG0066|consen 599 QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFN 678 (807)
T ss_pred CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcC
Confidence 345667777877777889999999999999999873211 0 0123333110 00111111111
Q ss_pred ---------HHhcCCchhH-hhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCE
Q psy5289 599 ---------FTRVGAADSQ-YRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPF 667 (813)
Q Consensus 599 ---------~~~~~~~d~~-~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~ 667 (813)
+.++|+.... .-.+..++++.+....+... +..|+++||||||..+|...--+++.+|-+ .+..
T Consensus 679 lpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIne-----y~Gg 753 (807)
T KOG0066|consen 679 LPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINE-----YNGG 753 (807)
T ss_pred CChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHh-----ccCc
Confidence 1222221100 01122345555544444444 589999999999988888765555555444 3456
Q ss_pred EEEEcCChHHHh
Q psy5289 668 TLFATHFHEIAL 679 (813)
Q Consensus 668 ~l~~TH~~el~~ 679 (813)
||++|||..+..
T Consensus 754 Vi~VsHDeRLi~ 765 (807)
T KOG0066|consen 754 VIMVSHDERLIV 765 (807)
T ss_pred EEEEecccceee
Confidence 899999976654
No 410
>KOG2355|consensus
Probab=99.16 E-value=1.1e-10 Score=114.28 Aligned_cols=168 Identities=14% Similarity=0.143 Sum_probs=102.2
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----hhcc-------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----AQIG------------- 582 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----aq~g------------- 582 (813)
..|++.+.+..+-+ ..++.-|++++.+.|.-.+++|.|||||||+||.+++-... -|.+
T Consensus 12 ~aievsgl~f~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~S 87 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESS 87 (291)
T ss_pred ceEEEeccEEeccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccccc
Confidence 45777777665432 24777799999999999999999999999999998642110 0000
Q ss_pred ---ccc-------cCCc------cchhHHHHHHHhcCCchh-------------HhhccchhHHHHHHHHHHHHh-CCCC
Q psy5289 583 ---CFV-------PCDS------ATISVVDQIFTRVGAADS-------------QYRGISTFMMEMKETATVIKK-CTEN 632 (813)
Q Consensus 583 ---~~v-------pa~~------~~~~~~d~i~~~~~~~d~-------------~~~~~s~f~~e~~~~~~il~~-~~~~ 632 (813)
+|. +... ..++...-|+. ++-.|. +.-.....+.+.++...|..- ..+-
T Consensus 88 gdl~YLGgeW~~~~~~agevplq~D~sae~mifg-V~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~Pf 166 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFG-VGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPF 166 (291)
T ss_pred CceeEecccccccccccccccccccccHHHHHhh-ccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccce
Confidence 000 1111 12333222332 221111 111122344556665555554 4566
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC-hHHHhhcCCCCceEeeEEE
Q psy5289 633 SLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF-HEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 633 ~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~-~el~~~~~~~~~v~~~~~~ 693 (813)
.+++|||.|--+|...+..+..-+-+...+ .|||+++|||- -.++....++..+++|.+.
T Consensus 167 kVLLLDEVTVDLDVlARadLLeFlkeEce~-RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~ 227 (291)
T KOG2355|consen 167 KVLLLDEVTVDLDVLARADLLEFLKEECEQ-RGATIVYATHIFDGLETWPTHLVYIKSGKLV 227 (291)
T ss_pred eEEEeeeeEeehHHHHHHHHHHHHHHHHhh-cCcEEEEEeeeccchhhcchhEEEecCCeee
Confidence 899999998888877665554433343333 69999999996 4566677776667776654
No 411
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.15 E-value=1.8e-10 Score=123.18 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=107.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh-----------------ccccccCCc----cchhHH--
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-----------------IGCFVPCDS----ATISVV-- 595 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-----------------~g~~vpa~~----~~~~~~-- 595 (813)
.++..|++|.+..|++++|+|++|+||||+||+|.+...--. +...+|... ....+.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh 475 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH 475 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence 688999999999999999999999999999999965432110 011122211 011222
Q ss_pred -----------HHHHHhcCCchhHhh--ccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHH
Q psy5289 596 -----------DQIFTRVGAADSQYR--GISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELA 661 (813)
Q Consensus 596 -----------d~i~~~~~~~d~~~~--~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~ 661 (813)
-.++.+.|+.|.... ..+.++.+.++.+.+++. +..|.+++.||.++-+|+..+..++..+-+...
T Consensus 476 l~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaR 555 (593)
T COG2401 476 LRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR 555 (593)
T ss_pred HhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 246677777775543 346667777777776665 468899999999999999999999887776554
Q ss_pred hcCCCEEEEEcCChHHHhhc--CCCCceEe
Q psy5289 662 SHRQPFTLFATHFHEIALLS--RVIPTFRN 689 (813)
Q Consensus 662 ~~~~~~~l~~TH~~el~~~~--~~~~~v~~ 689 (813)
+ .|.|.+++||..|+.+-. |..+.+..
T Consensus 556 e-~giTlivvThrpEv~~AL~PD~li~vgY 584 (593)
T COG2401 556 E-AGITLIVVTHRPEVGNALRPDTLILVGY 584 (593)
T ss_pred H-hCCeEEEEecCHHHHhccCCceeEEeec
Confidence 4 799999999999998743 44443433
No 412
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.15 E-value=1e-09 Score=125.62 Aligned_cols=142 Identities=15% Similarity=0.100 Sum_probs=95.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhcc---------ccccCCc-----------------cch
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG---------CFVPCDS-----------------ATI 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g---------~~vpa~~-----------------~~~ 592 (813)
....++.+|.++.|+-+.|+||||||||||+|++|++-...... .|+|... ..+
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~ 485 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDF 485 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCC
Confidence 46778899999999999999999999999999998764332211 2333221 011
Q ss_pred h--HHHHHHHhcCCchhHh------hccchhH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q psy5289 593 S--VVDQIFTRVGAADSQY------RGISTFM-MEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASH 663 (813)
Q Consensus 593 ~--~~d~i~~~~~~~d~~~------~~~s~f~-~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~ 663 (813)
+ .+-+++..+|+.+-.. .....++ +|.++++.+.-..++|++++|||-|+++|+.....+...+.+.+
T Consensus 486 ~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--- 562 (604)
T COG4178 486 SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--- 562 (604)
T ss_pred ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC---
Confidence 1 1223555555544222 2223344 45666666666679999999999999999876555544333332
Q ss_pred CCCEEEEEcCChHHHhhcCC
Q psy5289 664 RQPFTLFATHFHEIALLSRV 683 (813)
Q Consensus 664 ~~~~~l~~TH~~el~~~~~~ 683 (813)
.++++|-++|-..+..+.++
T Consensus 563 p~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 563 PDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred CCCEEEEeccchhhHHHHhh
Confidence 57999999999888776554
No 413
>KOG0055|consensus
Probab=99.14 E-value=1.5e-10 Score=140.09 Aligned_cols=175 Identities=14% Similarity=0.121 Sum_probs=114.7
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhh-------hh--------------hhh
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG-------VS--------------VFL 578 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~-------~~--------------~~l 578 (813)
+.|.+++...-+-. ....+|.+++++++..|+.++|+||+||||||.+-.+- +. .+.
T Consensus 986 G~I~~~~V~F~YPs--RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 986 GDIEFRNVSFAYPT--RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred eEEEEeeeEeeCCC--CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 34666665433322 23468999999999999999999999999999988761 11 111
Q ss_pred hhccccccCCcc--chhHHHH------------HHH---hcCC-------ch----hHhhccchhHHHHHHHHHHHHh-C
Q psy5289 579 AQIGCFVPCDSA--TISVVDQ------------IFT---RVGA-------AD----SQYRGISTFMMEMKETATVIKK-C 629 (813)
Q Consensus 579 aq~g~~vpa~~~--~~~~~d~------------i~~---~~~~-------~d----~~~~~~s~f~~e~~~~~~il~~-~ 629 (813)
.|+| .|..+.. .-++.+. +.. .-++ ++ .+...-..+|++++|+..|+++ .
T Consensus 1064 ~~i~-lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAil 1142 (1228)
T KOG0055|consen 1064 KQIG-LVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAIL 1142 (1228)
T ss_pred Hhcc-eeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHH
Confidence 2222 1211110 0011111 111 1111 11 1111234677888888777776 5
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCe
Q psy5289 630 TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDN 700 (813)
Q Consensus 630 ~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~ 700 (813)
.+|+++||||-|+.+|+.. ..+.+..++.... |.|+|+++|-+...+-+|.+..++||.+...++.++
T Consensus 1143 RnPkILLLDEATSALDseS-ErvVQeALd~a~~--gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1143 RNPKILLLDEATSALDSES-ERVVQEALDRAME--GRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDE 1210 (1228)
T ss_pred cCCCeeeeeccchhhhhhh-HHHHHHHHHHhhc--CCcEEEEecchhhhhcCCEEEEEECCEEEecccHHH
Confidence 8999999999999999865 4455666666654 899999999999999999999999999887665443
No 414
>KOG0056|consensus
Probab=99.13 E-value=1.1e-10 Score=126.86 Aligned_cols=169 Identities=18% Similarity=0.229 Sum_probs=106.0
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhh--------hh-------------hhh
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG--------VS-------------VFL 578 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~--------~~-------------~~l 578 (813)
+.|..++....+ .++.++..|++|+..+|+.++++||+|+||||+||.+- .+ ..-
T Consensus 536 G~i~fsnvtF~Y----~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLR 611 (790)
T KOG0056|consen 536 GKIEFSNVTFAY----DPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLR 611 (790)
T ss_pred CeEEEEEeEEec----CCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHH
Confidence 556666543222 23578999999999999999999999999999999872 11 122
Q ss_pred hhccccccCCccch-------------hH-HHH---------HHHhc-CCchhH-----hhccchhHHHHHHHHHHHH-h
Q psy5289 579 AQIGCFVPCDSATI-------------SV-VDQ---------IFTRV-GAADSQ-----YRGISTFMMEMKETATVIK-K 628 (813)
Q Consensus 579 aq~g~~vpa~~~~~-------------~~-~d~---------i~~~~-~~~d~~-----~~~~s~f~~e~~~~~~il~-~ 628 (813)
.++| .||.+..-+ +- -++ |..|+ +..|.- .+|. .++++.+|...|.+ .
T Consensus 612 s~IG-VVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL-kLSGGEKQRVAiARti 689 (790)
T KOG0056|consen 612 SSIG-VVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL-KLSGGEKQRVAIARTI 689 (790)
T ss_pred HhcC-cccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc-ccCCcchhhHHHHHHH
Confidence 3444 466653210 00 011 11111 111111 1222 23444444444444 4
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEE
Q psy5289 629 CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 629 ~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~ 697 (813)
...|++++|||.|+.+|+..-.+| ++.+..++. +.|.|++-|-..-.--+|.+-.+++|.+...+.
T Consensus 690 LK~P~iIlLDEATSALDT~tER~I-QaaL~rlca--~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~ 755 (790)
T KOG0056|consen 690 LKAPSIILLDEATSALDTNTERAI-QAALARLCA--NRTTIVVAHRLSTIVNADLILVISNGRIVERGR 755 (790)
T ss_pred hcCCcEEEEcchhhhcCCccHHHH-HHHHHHHhc--CCceEEEeeeehheecccEEEEEeCCeEeecCc
Confidence 689999999999999999887777 556667775 667788889866555566666677776654443
No 415
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.11 E-value=2.6e-10 Score=123.60 Aligned_cols=178 Identities=17% Similarity=0.162 Sum_probs=115.2
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhhhhhh------ccccccCC-----ccch---------------hHHHHHHHhcC
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ------IGCFVPCD-----SATI---------------SVVDQIFTRVG 603 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~~laq------~g~~vpa~-----~~~~---------------~~~d~i~~~~~ 603 (813)
..|+++++.||||-|||||.|.+|+..-... .-++-|+- ..++ .+...++..++
T Consensus 365 ~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~ 444 (591)
T COG1245 365 YDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLN 444 (591)
T ss_pred ecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccc
Confidence 4578999999999999999999976432111 01122211 1111 12234555666
Q ss_pred CchhHhhccchhH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhc-
Q psy5289 604 AADSQYRGISTFM-MEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLS- 681 (813)
Q Consensus 604 ~~d~~~~~~s~f~-~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~- 681 (813)
+.+-+.+....+| +|+++++-+++.+.+.+|.+||||.+-+|...+...+.+|.+.+.+ .+.+.+++-||.-+..+.
T Consensus 445 l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~-~~kta~vVdHDi~~~dyvs 523 (591)
T COG1245 445 LEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIEN-NEKTALVVDHDIYMIDYVS 523 (591)
T ss_pred hHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhh-cCceEEEEecceehhhhhh
Confidence 7777777777776 5677777788888999999999999999999888887766655544 789999999998776643
Q ss_pred CCCCceEeeEEEEEEECCeEEEEEEeccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q psy5289 682 RVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDET 755 (813)
Q Consensus 682 ~~~~~v~~~~~~~~~~~~~i~~~y~l~~G~~~~s~gi~vA~~ag~p~~vi~~A~~~~~~le~~~~~~~~~~~~~ 755 (813)
|++ |.+.+ .||..+. |.=|.+.-+-.+..+++|.-.-.+.....+|.
T Consensus 524 Dr~-------ivF~G-----------ePg~~g~---------a~~P~~mr~GMN~FLk~l~vTFRRD~~t~RPR 570 (591)
T COG1245 524 DRL-------IVFEG-----------EPGKHGH---------ASPPMSMREGMNRFLKNLGVTFRRDPETGRPR 570 (591)
T ss_pred ceE-------EEEec-----------CCCccCc---------CCCCccHHHHHHHHHHHcCcEEecCcccCCCC
Confidence 332 22222 2443222 22366777777777777665444444333333
No 416
>KOG0054|consensus
Probab=99.09 E-value=8.4e-10 Score=136.73 Aligned_cols=175 Identities=13% Similarity=0.115 Sum_probs=122.5
Q ss_pred cceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------hhccccccCCc--
Q psy5289 519 TGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------AQIGCFVPCDS-- 589 (813)
Q Consensus 519 ~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------aq~g~~vpa~~-- 589 (813)
+..+.++++.-..-. .+..+..+|++|++..|+.++|+||-|||||+||.++.+-... ...-.|||+..
T Consensus 516 ~~~i~i~~~sfsW~~--~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI 593 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDS--ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWI 593 (1381)
T ss_pred CceEEEeeeeEecCC--CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHh
Confidence 456788777544321 1234589999999999999999999999999999998542211 11123555432
Q ss_pred --cchh------------HHHHH---------HHhcCCchhH--hhccchhHHHHHHHHHHHHhC-CCCcEEEEeCCCCC
Q psy5289 590 --ATIS------------VVDQI---------FTRVGAADSQ--YRGISTFMMEMKETATVIKKC-TENSLVIIDELGRG 643 (813)
Q Consensus 590 --~~~~------------~~d~i---------~~~~~~~d~~--~~~~s~f~~e~~~~~~il~~~-~~~~LlllDEp~~G 643 (813)
+++. ..++. +.-+...|.- ...--++|+|++++..++++. .+.+++|||-|.+.
T Consensus 594 ~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSA 673 (1381)
T KOG0054|consen 594 QNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSA 673 (1381)
T ss_pred hCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchh
Confidence 1110 11122 2222222222 222346788888877777765 89999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEE
Q psy5289 644 TSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 644 td~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~ 697 (813)
.|..-|..+...++.-+.+ +.|+|++||..++...+|.+..++||++...++
T Consensus 674 VDahvg~~if~~ci~~~L~--~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gt 725 (1381)
T KOG0054|consen 674 VDAHVGKHIFEECIRGLLR--GKTVILVTHQLQFLPHADQIIVLKDGKIVESGT 725 (1381)
T ss_pred hhHhhhHHHHHHHHHhhhc--CCEEEEEeCchhhhhhCCEEEEecCCeEecccC
Confidence 9999999998887765554 789999999999998899988899998876654
No 417
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.03 E-value=8.2e-10 Score=106.22 Aligned_cols=154 Identities=18% Similarity=0.104 Sum_probs=98.7
Q ss_pred ccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh-----------cc------------ccccCCcc----chhH
Q psy5289 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-----------IG------------CFVPCDSA----TISV 594 (813)
Q Consensus 542 ~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-----------~g------------~~vpa~~~----~~~~ 594 (813)
...|+|+.++|+.++|+|.||||||||.|++++++.... .| +--|..+. .++.
T Consensus 29 V~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGq 108 (267)
T COG4167 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQ 108 (267)
T ss_pred ccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhh
Confidence 346778888999999999999999999999987642110 00 00011110 0110
Q ss_pred -H----------------HHH---HHhcCC-chhHhhccchhHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChhhHHHH
Q psy5289 595 -V----------------DQI---FTRVGA-ADSQYRGISTFMMEMKE-TATVIKKCTENSLVIIDELGRGTSTFDGFGM 652 (813)
Q Consensus 595 -~----------------d~i---~~~~~~-~d~~~~~~s~f~~e~~~-~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i 652 (813)
. .+| +.++|+ .|........++.+.++ ++.+.+...+|+++|.||...++|..-...+
T Consensus 109 iLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl 188 (267)
T COG4167 109 ILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQL 188 (267)
T ss_pred HhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHH
Confidence 0 122 234453 33333344455555555 4444445689999999999999998877777
Q ss_pred HHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEE
Q psy5289 653 ACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALE 696 (813)
Q Consensus 653 ~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~ 696 (813)
....++ +.++.|...|.+|.+..+.. ++|.+..+..|.|...+
T Consensus 189 ~NL~Le-LQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 189 INLMLE-LQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred HHHHHH-HHHHhCceEEEEechhhHhhhhcccEEEEecCceeecC
Confidence 665554 56668999999998877665 66777666777665443
No 418
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.02 E-value=1.6e-09 Score=117.52 Aligned_cols=148 Identities=18% Similarity=0.151 Sum_probs=104.6
Q ss_pred eeccccccc----cCCceeEEEEccCCCChhHHHhhhhhhhhhhhccc--------------------------------
Q psy5289 540 YIPNDVYFK----SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC-------------------------------- 583 (813)
Q Consensus 540 ~i~n~v~l~----~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~-------------------------------- 583 (813)
+=+|++.+- ..+|++++|+||||-||||-+|++++.... ..|-
T Consensus 84 Yg~NgFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~P-NLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r 162 (591)
T COG1245 84 YGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKP-NLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELR 162 (591)
T ss_pred ccCCceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCcccc-CCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcc
Confidence 344554443 256899999999999999999999753211 0010
Q ss_pred ---------cccCC-----------ccchhHHHHHHHhcCCchhHhhccchhHH-HHHHHHHHHHhCCCCcEEEEeCCCC
Q psy5289 584 ---------FVPCD-----------SATISVVDQIFTRVGAADSQYRGISTFMM-EMKETATVIKKCTENSLVIIDELGR 642 (813)
Q Consensus 584 ---------~vpa~-----------~~~~~~~d~i~~~~~~~d~~~~~~s~f~~-e~~~~~~il~~~~~~~LlllDEp~~ 642 (813)
.+|.. ..+-+.+|.+..++++..-+.+..+.+|+ |+++++.++..+.+.+++++|||++
T Consensus 163 ~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsS 242 (591)
T COG1245 163 AVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSS 242 (591)
T ss_pred eecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcc
Confidence 01110 01124556778888888888888998885 5666666666778999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEee
Q psy5289 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNV 690 (813)
Q Consensus 643 Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~ 690 (813)
-+|...+...+..|. .+.+ .+.+||++.||+....+.....++..|
T Consensus 243 yLDi~qRl~~ar~Ir-el~~-~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 243 YLDIRQRLNAARVIR-ELAE-DGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred cccHHHHHHHHHHHH-HHhc-cCCeEEEEechHHHHHHhhheeEEEec
Confidence 999999988877554 4665 488999999998888766555544443
No 419
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=98.98 E-value=5.2e-09 Score=92.66 Aligned_cols=81 Identities=20% Similarity=0.468 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccceeEeecCc-ceEEEEecccccccCcCceEeeeecceEEEeChhHHHHHHHHH
Q psy5289 376 DRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQ-GFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQ 454 (813)
Q Consensus 376 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~-gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~ 454 (813)
..++++.+.+++++.++++.+++ +++++.++++ ||+|+|++++...+|++|+.++++++++||+|++|++|+.++.
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~---~~lk~~~~~~~gy~i~v~~~~~~~~p~~~~~~~~~k~~~rf~t~~l~~L~~~~~ 87 (92)
T PF05190_consen 11 EEYEEIEEELEELLEEIRKKLGI---PSLKLVYIPKRGYLIEVPKSDEKKLPKDFIIVSSTKSGVRFTTPELKELNEELK 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT----TTBEEEEETTTEEEEEEETCCGGGSTTTEEEEEEESSEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC---CcEEEEEcCceEEEEEEEccccccCCCceEEEEEEcCcEEEECHHHHHHHHHHH
Confidence 44667777888888888999988 5899999999 9999999999889999999999999999999999999999999
Q ss_pred HHHHH
Q psy5289 455 AIQRE 459 (813)
Q Consensus 455 ~~~~~ 459 (813)
++.++
T Consensus 88 ~~~ee 92 (92)
T PF05190_consen 88 EAEEE 92 (92)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 88764
No 420
>KOG0062|consensus
Probab=98.98 E-value=4.2e-09 Score=116.11 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=95.9
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhh-hh---------------hhhhccc-----c----------ccCC
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV-SV---------------FLAQIGC-----F----------VPCD 588 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~-~~---------------~laq~g~-----~----------vpa~ 588 (813)
.+...++++.+..+-++++|+||+||||++|.+.. .. +.+|.-+ . .|..
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~ 457 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK 457 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC
Confidence 35556677766667899999999999999999742 11 1111100 0 0100
Q ss_pred ccchhHHHHHHHhcCCchhH-hhccchhHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCC
Q psy5289 589 SATISVVDQIFTRVGAADSQ-YRGISTFMMEMK-ETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQP 666 (813)
Q Consensus 589 ~~~~~~~d~i~~~~~~~d~~-~~~~s~f~~e~~-~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~ 666 (813)
.-.-..+-+.++|+.-.+ .....++|++++ +++.+.....+|-|++|||| |++.|..++ .|+.+.|.. .+.
T Consensus 458 --~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEP---TNhLD~dsl-~AL~~Al~~-F~G 530 (582)
T KOG0062|consen 458 --TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEP---TNHLDRDSL-GALAKALKN-FNG 530 (582)
T ss_pred --CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCC---CccccHHHH-HHHHHHHHh-cCC
Confidence 001123456778865444 444577887776 45555566789999999999 455554444 556666766 566
Q ss_pred EEEEEcCChHHHh-hcCCCCceEeeEEEE
Q psy5289 667 FTLFATHFHEIAL-LSRVIPTFRNVQVSA 694 (813)
Q Consensus 667 ~~l~~TH~~el~~-~~~~~~~v~~~~~~~ 694 (813)
.|+++|||.+++. +++.+-.+.+|+|.-
T Consensus 531 GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 531 GVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 7899999999887 566666677887764
No 421
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=1.2e-09 Score=117.29 Aligned_cols=73 Identities=15% Similarity=0.091 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHH-h--CC--CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEe
Q psy5289 615 FMMEMKETATVIK-K--CT--ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRN 689 (813)
Q Consensus 615 f~~e~~~~~~il~-~--~~--~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~ 689 (813)
+++++++...+.. . +. +|+++|+|||++|+|+.....+...+ ..+.+ ++++|++||++++...++++..+.+
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l-~~~~~--~~tii~isH~~~~~~~~d~~~~l~~ 247 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKL-KELSR--SHQVLCITHLPQVAAMADNHFLVEK 247 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHH-HHHhC--CCEEEEEechHHHHHhcCcEEEEEE
Confidence 5667766555443 2 22 99999999999999998777765544 44443 6899999999988888877655544
Q ss_pred e
Q psy5289 690 V 690 (813)
Q Consensus 690 ~ 690 (813)
+
T Consensus 248 ~ 248 (276)
T cd03241 248 E 248 (276)
T ss_pred e
Confidence 3
No 422
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.93 E-value=5.8e-09 Score=117.38 Aligned_cols=170 Identities=18% Similarity=0.151 Sum_probs=119.8
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh---------------------h
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF---------------------L 578 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~---------------------l 578 (813)
..+++++..++- ..+|++|+...|++++|.|-=|||+|-+++.+.+... .
T Consensus 262 ~~l~v~~l~~~~---------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai 332 (500)
T COG1129 262 PVLEVRNLSGGG---------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAI 332 (500)
T ss_pred cEEEEecCCCCC---------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHH
Confidence 456666554432 3458999999999999999999999999999855311 1
Q ss_pred hhccccccCCccchhH------HH--------------------------HHHHhcCC-chhHhhccchhHHHHHHHHHH
Q psy5289 579 AQIGCFVPCDSATISV------VD--------------------------QIFTRVGA-ADSQYRGISTFMMEMKETATV 625 (813)
Q Consensus 579 aq~g~~vpa~~~~~~~------~d--------------------------~i~~~~~~-~d~~~~~~s~f~~e~~~~~~i 625 (813)
.+.-.|||.+...-++ .+ ....+++. ..+.....+++|++=+|...+
T Consensus 333 ~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvl 412 (500)
T COG1129 333 KAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVL 412 (500)
T ss_pred HcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHH
Confidence 1122456655432111 11 11122221 113334567888888887777
Q ss_pred HHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC-hHHHhhcCCCCceEeeEEEEEEECCe
Q psy5289 626 IKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF-HEIALLSRVIPTFRNVQVSALEQEDN 700 (813)
Q Consensus 626 l~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~-~el~~~~~~~~~v~~~~~~~~~~~~~ 700 (813)
.+. +++|+++||||||+|.|.-....| +.++..++. .|..+|++|-+ .|+..++|++..+..|++......++
T Consensus 413 arwL~~~p~vLilDEPTRGIDVGAK~eI-y~li~~lA~-~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 413 ARWLATDPKVLILDEPTRGIDVGAKAEI-YRLIRELAA-EGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHhcCCCEEEECCCCcCcccchHHHH-HHHHHHHHH-CCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 776 589999999999999999877777 567777887 58888888777 68888999999999999987665443
No 423
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.91 E-value=4.1e-09 Score=102.09 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=45.2
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh
Q psy5289 622 TATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL 679 (813)
Q Consensus 622 ~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~ 679 (813)
++.+.+..+..-+.|||||.+|++|.-..++. +++..+.+ .|.-+|++||.+-+..
T Consensus 137 ~~i~~~rf~~~GiYiLDEPEa~LSp~RQlell-a~l~~la~-sGaQ~IiATHSPiLlA 192 (233)
T COG3910 137 LAIFHNRFNGQGIYILDEPEAALSPSRQLELL-AILRDLAD-SGAQIIIATHSPILLA 192 (233)
T ss_pred HHHHHHHhccCceEEecCccccCCHHHHHHHH-HHHHHHHh-cCCeEEEEecChhhee
Confidence 34455567888999999999999998777774 57788887 6899999999876654
No 424
>KOG0064|consensus
Probab=98.90 E-value=1.6e-08 Score=111.49 Aligned_cols=139 Identities=17% Similarity=0.113 Sum_probs=90.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------hhccccccCCcc-chh---------------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------AQIGCFVPCDSA-TIS--------------- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------aq~g~~vpa~~~-~~~--------------- 593 (813)
..+.+.++|.+++|.-++||||||||||+++|++|++-.. .+.-+|+|...- ..+
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~ 574 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQM 574 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHH
Confidence 4677789999999999999999999999999999876432 122234443321 000
Q ss_pred ----H-------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHH
Q psy5289 594 ----V-------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACS 655 (813)
Q Consensus 594 ----~-------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~ 655 (813)
+ .+.|..|=|-.|-+..+..-++++.+|...+++ .-.+|...+|||-|+..++.-- ..
T Consensus 575 ~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE----~~ 650 (728)
T KOG0064|consen 575 KRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVE----GK 650 (728)
T ss_pred HhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchH----HH
Confidence 0 112333333344444444455555555444444 4589999999999988887432 23
Q ss_pred HHHHHHhcCCCEEEEEcCChHHHhhcC
Q psy5289 656 IARELASHRQPFTLFATHFHEIALLSR 682 (813)
Q Consensus 656 i~~~l~~~~~~~~l~~TH~~el~~~~~ 682 (813)
+.+.... .|.+.|-+||-+.+-..-.
T Consensus 651 i~~~ak~-~gi~llsithrpslwk~h~ 676 (728)
T KOG0064|consen 651 IFQAAKD-AGISLLSITHRPSLWKYHT 676 (728)
T ss_pred HHHHHHh-cCceEEEeecCccHHHHHH
Confidence 4455554 6899999999988876543
No 425
>KOG0060|consensus
Probab=98.88 E-value=2.4e-08 Score=111.67 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=102.2
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh------------ccccccC
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ------------IGCFVPC 587 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq------------~g~~vpa 587 (813)
+.|++++. |+....+ +..+..+++|.+.+|+-++||||||||||+|||.+|.+-...+ --.|+|.
T Consensus 432 n~i~~e~v--~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQ 508 (659)
T KOG0060|consen 432 NAIEFEEV--SLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQ 508 (659)
T ss_pred ceEEeeee--eecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecC
Confidence 55555533 4443332 4567778999999999999999999999999999987643211 1134554
Q ss_pred Ccc-chh------------------------H--------HHHHHHhcCCch--hHhhccchhH-HHHHHHHHHHHhCCC
Q psy5289 588 DSA-TIS------------------------V--------VDQIFTRVGAAD--SQYRGISTFM-MEMKETATVIKKCTE 631 (813)
Q Consensus 588 ~~~-~~~------------------------~--------~d~i~~~~~~~d--~~~~~~s~f~-~e~~~~~~il~~~~~ 631 (813)
+.. ..+ + ...|..|.|-.| ....+..++| +|++|++.+.-.-++
T Consensus 509 rPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~k 588 (659)
T KOG0060|consen 509 RPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHK 588 (659)
T ss_pred CCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcC
Confidence 321 000 0 123455666444 4445556666 566777666666799
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcC
Q psy5289 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSR 682 (813)
Q Consensus 632 ~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~ 682 (813)
|.+.||||-|+..+..- . .++-+.+.+ .|.|.+-++|-..+.+.-+
T Consensus 589 Pk~AiLDE~TSAv~~dv-E---~~~Yr~~r~-~giT~iSVgHRkSL~kfHd 634 (659)
T KOG0060|consen 589 PKFAILDECTSAVTEDV-E---GALYRKCRE-MGITFISVGHRKSLWKFHD 634 (659)
T ss_pred CceEEeechhhhccHHH-H---HHHHHHHHH-cCCeEEEeccHHHHHhhhh
Confidence 99999999988888643 2 234445555 6999999999988877543
No 426
>KOG0065|consensus
Probab=98.86 E-value=4.1e-09 Score=127.81 Aligned_cols=174 Identities=16% Similarity=0.130 Sum_probs=108.6
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hh
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQ 580 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq 580 (813)
+....++.-.-+.. +.+..-+.++|+=-..+|-+++|.|++||||||||+.++.=..+ +.
T Consensus 786 ~V~~w~dl~~~~~~-qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R 864 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPI-QGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFAR 864 (1391)
T ss_pred ceEEEEeCCccccc-cccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhcc
Confidence 44555554333322 12446788999987888999999999999999999998642111 11
Q ss_pred ccccccCCcc---------------------------chhHHHHHHHhcCCch---hHh--hccchhHHHHHHHHHHHH-
Q psy5289 581 IGCFVPCDSA---------------------------TISVVDQIFTRVGAAD---SQY--RGISTFMMEMKETATVIK- 627 (813)
Q Consensus 581 ~g~~vpa~~~---------------------------~~~~~d~i~~~~~~~d---~~~--~~~s~f~~e~~~~~~il~- 627 (813)
...||-...- +...++.+..-+++.+ .+- .| +-++.|.+++..|..
T Consensus 865 ~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 865 VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVE 943 (1391)
T ss_pred ccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEE
Confidence 1112211110 1123455555555442 221 12 446667766555543
Q ss_pred hCCCC-cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCCh--HHHhhcCCCCceE-eeEEEEEEE
Q psy5289 628 KCTEN-SLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFH--EIALLSRVIPTFR-NVQVSALEQ 697 (813)
Q Consensus 628 ~~~~~-~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~--el~~~~~~~~~v~-~~~~~~~~~ 697 (813)
.+.+| +||+|||||+|+|...+..+. .+++.++. .|.+||.+=|.+ ++.+..|+.--++ .|++...++
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~-~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~ 1015 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVM-RFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGP 1015 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHH-HHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecC
Confidence 35677 999999999999997765554 46677776 799999999985 5556666655554 455555444
No 427
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.4e-08 Score=107.89 Aligned_cols=155 Identities=18% Similarity=0.137 Sum_probs=99.3
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhh--------hhhhhh------------hccccccCCccchhHHHH
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG--------VSVFLA------------QIGCFVPCDSATISVVDQ 597 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~--------~~~~la------------q~g~~vpa~~~~~~~~d~ 597 (813)
..++.++++|++..|+.++|+||.|+||||++|.+- .+.+.. ..-+.||.+..-+ .|.
T Consensus 275 ~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLF--NDt 352 (497)
T COG5265 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLF--NDT 352 (497)
T ss_pred cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceeh--hhh
Confidence 478999999999999999999999999999999872 221111 1123455543211 011
Q ss_pred HHHhc-------------------CC-------chhHhhccc----hhHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q psy5289 598 IFTRV-------------------GA-------ADSQYRGIS----TFMM-EMKETATVIKKCTENSLVIIDELGRGTST 646 (813)
Q Consensus 598 i~~~~-------------------~~-------~d~~~~~~s----~f~~-e~~~~~~il~~~~~~~LlllDEp~~Gtd~ 646 (813)
++..+ .. ++-...+.. ..++ |.++++-+.....+|+++++||.|+.+|+
T Consensus 353 i~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt 432 (497)
T COG5265 353 IAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDT 432 (497)
T ss_pred HHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhh
Confidence 11100 00 111111110 1233 44444444445689999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEE
Q psy5289 647 FDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 647 ~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~ 697 (813)
..-.+| ++-+..+. .|.|+|++-|-..-.--+|.+..++||.+...+.
T Consensus 433 ~te~~i-q~~l~~~~--~~rttlviahrlsti~~adeiivl~~g~i~erg~ 480 (497)
T COG5265 433 HTEQAI-QAALREVS--AGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGT 480 (497)
T ss_pred hHHHHH-HHHHHHHh--CCCeEEEEeehhhhccCCceEEEeeCCEEEecCc
Confidence 876666 44444455 3788999999877766678888888988875544
No 428
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.81 E-value=2.9e-08 Score=114.88 Aligned_cols=73 Identities=15% Similarity=0.089 Sum_probs=55.8
Q ss_pred ccchhHHHHHH-HHHHHH---hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCC
Q psy5289 611 GISTFMMEMKE-TATVIK---KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIP 685 (813)
Q Consensus 611 ~~s~f~~e~~~-~~~il~---~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~ 685 (813)
...|+|++-.| +..+-. .++.+.|.||||||.|+-..|-..+.. ++..|.. .|-|||++.|++++...+|.+.
T Consensus 819 patTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~-VL~rLvd-~GnTViVIEHNLdVIk~AD~II 895 (935)
T COG0178 819 PATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE-VLHRLVD-KGNTVIVIEHNLDVIKTADWII 895 (935)
T ss_pred ccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHH-HHHHHHh-CCCEEEEEecccceEeecCEEE
Confidence 34566655444 433332 357889999999999999999888855 7777887 6999999999999988887653
No 429
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.79 E-value=1.5e-08 Score=99.63 Aligned_cols=147 Identities=17% Similarity=0.145 Sum_probs=93.9
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh----------------------------hhhc---------c
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF----------------------------LAQI---------G 582 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~----------------------------laq~---------g 582 (813)
-+.+.++++.++|++-+++|.+|||||-..|.|+.+.- .++- .
T Consensus 21 K~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~s 100 (330)
T COG4170 21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchh
Confidence 45678999999999999999999999999999865320 0000 0
Q ss_pred cccc-------------CCccc------hhHH----HHHHHhcCCchhHh--hc-cchh-HHHHHHHHHHHHhCCCCcEE
Q psy5289 583 CFVP-------------CDSAT------ISVV----DQIFTRVGAADSQY--RG-ISTF-MMEMKETATVIKKCTENSLV 635 (813)
Q Consensus 583 ~~vp-------------a~~~~------~~~~----d~i~~~~~~~d~~~--~~-~s~f-~~e~~~~~~il~~~~~~~Ll 635 (813)
|.-| ....+ +++- =.++-++|..|.-. .. .-.+ .+|-+.+-.+++.|..|.|+
T Consensus 101 CLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLL 180 (330)
T COG4170 101 CLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLL 180 (330)
T ss_pred hcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceE
Confidence 1111 11100 0110 12456666654221 11 1111 23444455556667899999
Q ss_pred EEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCCh-HHHhhcCCCCce
Q psy5289 636 IIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFH-EIALLSRVIPTF 687 (813)
Q Consensus 636 llDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~-el~~~~~~~~~v 687 (813)
|.||||...++.....+.. ++..+.+..|.++|+++||. .+.+.++++..+
T Consensus 181 IADEPTN~~e~~Tq~QifR-LLs~mNQn~~TtILL~s~Dl~~is~W~d~i~Vl 232 (330)
T COG4170 181 IADEPTNSMEPTTQAQIFR-LLSRLNQNSNTTILLISHDLQMISQWADKINVL 232 (330)
T ss_pred eccCCCcccCccHHHHHHH-HHHHhhccCCceEEEEcccHHHHHHHhhheEEE
Confidence 9999999999988777744 66666665789999999995 455677765443
No 430
>KOG0054|consensus
Probab=98.75 E-value=2.8e-08 Score=123.42 Aligned_cols=174 Identities=14% Similarity=0.189 Sum_probs=117.6
Q ss_pred cceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh------------hhhcc----
Q psy5289 519 TGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF------------LAQIG---- 582 (813)
Q Consensus 519 ~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~------------laq~g---- 582 (813)
++.|++++..--+ ..+...|.++++|.+.+|+-++|+|.-||||||++.++--++- .+++|
T Consensus 1136 ~G~I~f~~~~~RY---rp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRY---RPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred CCeEEEEEeEEEe---CCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHH
Confidence 4667777753222 1234689999999999999999999999999999988733221 12333
Q ss_pred ----ccccCCcc----c----hhHHH--------HHHHhcC-----------CchhHhhccchhHHHHHHHHHHHHh-CC
Q psy5289 583 ----CFVPCDSA----T----ISVVD--------QIFTRVG-----------AADSQYRGISTFMMEMKETATVIKK-CT 630 (813)
Q Consensus 583 ----~~vpa~~~----~----~~~~d--------~i~~~~~-----------~~d~~~~~~s~f~~e~~~~~~il~~-~~ 630 (813)
+.+|++.. + +.+++ ..+.+.+ +...+..+-+.||.|.+|+..+.++ ..
T Consensus 1213 RsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr 1292 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR 1292 (1381)
T ss_pred HhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc
Confidence 34565532 1 11111 1223322 3334455567899999998887776 47
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEEC
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~ 698 (813)
+.++++|||.|+..|+..-.-|-..|.+.+ .+||||.+-|...-..-+|++..+.+|++.....+
T Consensus 1293 ~skILvLDEATAsVD~~TD~lIQ~tIR~~F---~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP 1357 (1381)
T KOG0054|consen 1293 KSKILVLDEATASVDPETDALIQKTIREEF---KDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSP 1357 (1381)
T ss_pred cCCEEEEecccccCChHHHHHHHHHHHHHh---cCCeEEEEeeccchhhhcCeEEEeeCCeEeecCCh
Confidence 889999999999999865333333333433 37999999999766666788888889888755443
No 431
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.71 E-value=6e-08 Score=123.78 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=56.7
Q ss_pred hccchhHHHHHHHHHHHHhC----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCC
Q psy5289 610 RGISTFMMEMKETATVIKKC----TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIP 685 (813)
Q Consensus 610 ~~~s~f~~e~~~~~~il~~~----~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~ 685 (813)
+..+|+|++..|...++... ..+.|+||||||.|+++.|...+.. +++.|.+ .|.|+|++.|+.++..-+|.+.
T Consensus 1695 q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~-~l~~L~~-~g~tvivieH~~~~i~~aD~ii 1772 (1809)
T PRK00635 1695 QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV-QLRTLVS-LGHSVIYIDHDPALLKQADYLI 1772 (1809)
T ss_pred CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH-HHHHHHh-cCCeEEEEeCCHHHHHhCCEEE
Confidence 34567776555544444433 2368999999999999999888855 5677776 6999999999999999888654
Q ss_pred c
Q psy5289 686 T 686 (813)
Q Consensus 686 ~ 686 (813)
.
T Consensus 1773 d 1773 (1809)
T PRK00635 1773 E 1773 (1809)
T ss_pred E
Confidence 3
No 432
>KOG0066|consensus
Probab=98.71 E-value=5.7e-09 Score=112.10 Aligned_cols=146 Identities=17% Similarity=0.162 Sum_probs=85.1
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhh--hhhhhcccccc-----------------CCccchh-------
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS--VFLAQIGCFVP-----------------CDSATIS------- 593 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~--~~laq~g~~vp-----------------a~~~~~~------- 593 (813)
....+.++.+-.|+-++++||||-|||||||.||.- .+..++..... ++..++.
T Consensus 278 ~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~ 357 (807)
T KOG0066|consen 278 LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAK 357 (807)
T ss_pred eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHH
Confidence 344455566667899999999999999999999632 22222211110 0000000
Q ss_pred ---------------------------------HHHHHHHhcCCch-hHhhccchhHHHHHH-HHHHHHhCCCCcEEEEe
Q psy5289 594 ---------------------------------VVDQIFTRVGAAD-SQYRGISTFMMEMKE-TATVIKKCTENSLVIID 638 (813)
Q Consensus 594 ---------------------------------~~d~i~~~~~~~d-~~~~~~s~f~~e~~~-~~~il~~~~~~~LlllD 638 (813)
...+|++-+|.+. -..++...|+++.+. ++.+.+....|.|++||
T Consensus 358 L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLD 437 (807)
T KOG0066|consen 358 LMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLD 437 (807)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeec
Confidence 0112333344322 222333455555443 33344445799999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEee
Q psy5289 639 ELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNV 690 (813)
Q Consensus 639 Ep~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~ 690 (813)
|| |++.|-.++.| +-.||.. -..|.|+++||..+.. .|..+.++.+.
T Consensus 438 EP---TNHLDLNAVIW-LdNYLQg-WkKTLLIVSHDQgFLD~VCtdIIHLD~q 485 (807)
T KOG0066|consen 438 EP---TNHLDLNAVIW-LDNYLQG-WKKTLLIVSHDQGFLDSVCTDIIHLDNQ 485 (807)
T ss_pred CC---ccccccceeee-hhhHHhh-hhheeEEEecccchHHHHHHHHhhhhhh
Confidence 99 55555555656 5677765 5789999999976654 66666655543
No 433
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.64 E-value=1.9e-07 Score=96.64 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=42.0
Q ss_pred hhHHHHHHHHH-HH----HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCC
Q psy5289 614 TFMMEMKETAT-VI----KKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVI 684 (813)
Q Consensus 614 ~f~~e~~~~~~-il----~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~ 684 (813)
.+|++.+.+.. ++ ....+.+++|||||..++|......++. ++..+.+ ++-+|++||..++...++..
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~-~l~~~~~--~~Q~ii~Th~~~~~~~a~~~ 208 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLAD-LLKELSK--QSQFIITTHNPEMFEDADKL 208 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHH-HHHHHTT--TSEEEEE-S-HHHHTT-SEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-ccccccc--cccccccccccccccccccc
Confidence 55655554322 22 2346788999999999999988777654 4444443 57899999999998887654
No 434
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.60 E-value=1.7e-07 Score=99.56 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=60.2
Q ss_pred eeEEEEccCCCChhHHHhhhhhhhhhhhccc-cccCCccchhHHH---HHHHhcC-Cchh-------HhhccchhHHHHH
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC-FVPCDSATISVVD---QIFTRVG-AADS-------QYRGISTFMMEMK 620 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~~~laq~g~-~vpa~~~~~~~~d---~i~~~~~-~~d~-------~~~~~s~f~~e~~ 620 (813)
.-++|.||||||||||+|.++...... .|. .+.. ..+..+| .+...++ ..+. +..+... ..+|.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g--~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-~~~~~ 187 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRG--KKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK-AEGMM 187 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECC--EEeecchhHHHHHHHhcccccccccccccccccchH-HHHHH
Confidence 568999999999999999997654321 111 1111 1111111 1111111 1111 1111110 11232
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcC
Q psy5289 621 ETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSR 682 (813)
Q Consensus 621 ~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~ 682 (813)
. +..+.+|+++|+|||++ . ....++++.+. .|.++|++||+..+..+.+
T Consensus 188 ~----~i~~~~P~villDE~~~---~----e~~~~l~~~~~--~G~~vI~ttH~~~~~~~~~ 236 (270)
T TIGR02858 188 M----LIRSMSPDVIVVDEIGR---E----EDVEALLEALH--AGVSIIATAHGRDVEDLYK 236 (270)
T ss_pred H----HHHhCCCCEEEEeCCCc---H----HHHHHHHHHHh--CCCEEEEEechhHHHHHHh
Confidence 2 22235999999999953 2 22344555554 4899999999987766543
No 435
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=2.8e-07 Score=98.64 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHh----------CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC-hHHHhhc
Q psy5289 615 FMMEMKETATVIKK----------CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF-HEIALLS 681 (813)
Q Consensus 615 f~~e~~~~~~il~~----------~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~-~el~~~~ 681 (813)
.+.++++...++.. ..+|+++|+|||++++|+.....+ ++.+.+ .+. ++++||+ .++..++
T Consensus 184 lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l----~~~l~~-~~q-~ii~~~~~~~~~~~~ 255 (270)
T cd03242 184 GSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAAL----LDAIEG-RVQ-TFVTTTDLADFDALW 255 (270)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHH----HHHhhc-CCC-EEEEeCCchhccchh
Confidence 35566554444432 368999999999999999765544 444444 333 4555554 4544444
No 436
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.39 E-value=2e-06 Score=89.67 Aligned_cols=124 Identities=16% Similarity=0.119 Sum_probs=61.5
Q ss_pred cCCceeEEEEccCCCChhHHHhh-hhhhhhhhhccccccCCccchhHHHHHHHhcCCc--hhHhhcc-------chhHHH
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRS-IGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAA--DSQYRGI-------STFMME 618 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~-i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~--d~~~~~~-------s~f~~e 618 (813)
.++|++++|+||||+||||+..+ ++...--..-+.|+..+...-.+... ...+|.. +....+. ..++..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~-~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQ-MMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH-HHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 46689999999999999999544 43332222223344433222222222 1333321 1111000 001111
Q ss_pred ---HHHHHHHHHh--CCCCcEEEEeCCCCCC----ChhhHHHHHHHHHHHHHhcCCCEEEEEcCChH
Q psy5289 619 ---MKETATVIKK--CTENSLVIIDELGRGT----STFDGFGMACSIARELASHRQPFTLFATHFHE 676 (813)
Q Consensus 619 ---~~~~~~il~~--~~~~~LlllDEp~~Gt----d~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~e 676 (813)
...+..++.. ..+++++++|||+.+. |+.....+ ..++..+.+ .|++++ +||+..
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l-~~~l~~l~~-~g~tvi-~t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDL-MAFFKRISS-LNKVII-LTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHH-HHHHHHHHh-CCCEEE-EEeccc
Confidence 1112223333 2579999999999887 33333333 345555555 477554 456543
No 437
>PRK13695 putative NTPase; Provisional
Probab=98.37 E-value=6.8e-07 Score=89.10 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=39.3
Q ss_pred hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEE
Q psy5289 628 KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQV 692 (813)
Q Consensus 628 ~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~ 692 (813)
...+++++++|||+ .++..+ ......+.+ +.+ .+.++|+++|+......++++.....+.+
T Consensus 93 ~l~~~~~lllDE~~-~~e~~~-~~~~~~l~~-~~~-~~~~~i~v~h~~~~~~~~~~i~~~~~~~i 153 (174)
T PRK13695 93 ALEEADVIIIDEIG-KMELKS-PKFVKAVEE-VLD-SEKPVIATLHRRSVHPFVQEIKSRPGGRV 153 (174)
T ss_pred ccCCCCEEEEECCC-cchhhh-HHHHHHHHH-HHh-CCCeEEEEECchhhHHHHHHHhccCCcEE
Confidence 35689999999974 244443 233343444 444 58899999999766666666555555544
No 438
>KOG0219|consensus
Probab=98.34 E-value=7.9e-08 Score=110.39 Aligned_cols=293 Identities=10% Similarity=-0.072 Sum_probs=195.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhhc---CC----CCCCCCcccC
Q psy5289 444 DRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTC---AP----KPYVRPCMKP 516 (813)
Q Consensus 444 ~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~S~A~~a~~---~~----~~~~rP~~~~ 516 (813)
.+-.++..+|...+..+.+.-.. +........+.+..+...+.-+=++.-.|.+|-- .| .+--|-.+..
T Consensus 544 ~e~~~~qk~Y~~~Q~~ivrevik----ia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~gs~rl~l~~ 619 (902)
T KOG0219|consen 544 DEFMSLQKEYDEAQNEIVREIIK----IAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLGSKRLELKQ 619 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccchhHHHHHh
Confidence 34445666666666655543222 2233344444555555444444444444443321 11 1110111111
Q ss_pred CCcceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCcc-chhHH
Q psy5289 517 MGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSA-TISVV 595 (813)
Q Consensus 517 ~~~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~-~~~~~ 595 (813)
....+--.+.+||+++....-.+.++++.+--+++.---.||++++|++|||.+||..+.+++.++.+|+.-. +++.-
T Consensus 620 -~rHp~lE~Qd~~~fIpNdv~le~~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~ 698 (902)
T KOG0219|consen 620 -SRHPVLEGQDEIPFIPNDVVLEKGKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAG 698 (902)
T ss_pred -cccchhhccccCCCCCCccccccCCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccc
Confidence 0111223567899998766566788999888777777789999999999999999999999999999987543 34443
Q ss_pred HHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCCh
Q psy5289 596 DQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFH 675 (813)
Q Consensus 596 d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~ 675 (813)
|.. .+-+.........++++.++.....++....-.+....+|-++++.+.++..+.|.....+-....+-+...+|.+
T Consensus 699 D~q-~kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~lae~~ 777 (902)
T KOG0219|consen 699 DSQ-LKGISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELTKLAEQL 777 (902)
T ss_pred hhh-hcchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhhhh
Confidence 433 3333445556666777777766666666667778899999999999999998888766666544566677889998
Q ss_pred HHHhhcCCCCceEeeEEEEEEECCeEEEEEEeccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHhhhcCC
Q psy5289 676 EIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTK 748 (813)
Q Consensus 676 el~~~~~~~~~v~~~~~~~~~~~~~i~~~y~l~~G~~~~s~gi~vA~~ag~p~~vi~~A~~~~~~le~~~~~~ 748 (813)
.-+..+.....+.| .+---+.-.|.-..|.+..++++++|.....|.++.+++-+-+++++...+..
T Consensus 778 ~~vKn~h~~a~i~~------~~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~~~e~k 844 (902)
T KOG0219|consen 778 PTVKNLHVTAQIEN------DDITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDELVIKESK 844 (902)
T ss_pred hhhhhheeeeEecC------cchhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHHhhhhhh
Confidence 88876655555555 22222333466778899999999999999999999999988888887664443
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.31 E-value=1.5e-06 Score=87.37 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=66.2
Q ss_pred eEEEEccCCCChhHHHhhhhhhhhhh-hccccccCCccchhHHHHHHHhcCCchh----------HhhccchhHHHHHH-
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFTRVGAADS----------QYRGISTFMMEMKE- 621 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~~~la-q~g~~vpa~~~~~~~~d~i~~~~~~~d~----------~~~~~s~f~~e~~~- 621 (813)
+++|+||.|+||||+.-+++.-.... .-..|+..+... .-+.+.+.++|..-. .......++.+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~-~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP-EELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH-HHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 37899999999999998876543321 122333332221 111222333443211 11111122333222
Q ss_pred ----HHHHHH--hCCCCcEEEEeCCCCCCC---hhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH
Q psy5289 622 ----TATVIK--KCTENSLVIIDELGRGTS---TFDGFGMACSIARELASHRQPFTLFATHFHEI 677 (813)
Q Consensus 622 ----~~~il~--~~~~~~LlllDEp~~Gtd---~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el 677 (813)
+..+.. ...+++++++|||+..++ ...... ...++..+.+ .|+++|+++|....
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~-i~~l~~~l~~-~g~tvi~v~~~~~~ 142 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLE-IRRLLFALKR-FGVTTLLTSEQSGL 142 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHH-HHHHHHHHHH-CCCEEEEEeccccC
Confidence 111221 235899999999998887 332232 3456666766 58999999998654
No 440
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.28 E-value=1.5e-06 Score=90.74 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHh---CCCC-cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH
Q psy5289 616 MMEMKETATVIKK---CTEN-SLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA 678 (813)
Q Consensus 616 ~~e~~~~~~il~~---~~~~-~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~ 678 (813)
+.|++++..++.. +... +++++|||..++.|.-...+.. ++..+.+ .+.-++++||.+.+.
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~-~l~~~~~-~~~QviitTHSp~il 302 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIE-LLKELSK-KNIQVIITTHSPFIL 302 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHH-HHHHTGG-GSSEEEEEES-GGG-
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHH-HHHhhCc-cCCEEEEeCccchhc
Confidence 6677776444433 3333 9999999999999976555543 3333333 478999999997653
No 441
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.20 E-value=1e-05 Score=91.63 Aligned_cols=151 Identities=11% Similarity=0.036 Sum_probs=85.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhcccccc-C-CccchhHHHHHH-HhcCCchhHhhc----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVP-C-DSATISVVDQIF-TRVGAADSQYRG---- 611 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vp-a-~~~~~~~~d~i~-~~~~~~d~~~~~---- 611 (813)
..+.+++ +.+..|+.++|+||||+||||++++++...-. ..|.+.- . ...++. .+. ..++.. .+.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~gvI~~~Gerg~ev~---e~~~~~l~~~-~l~r~v~vv 219 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA-DLNVIALIGERGREVR---EFIERDLGPE-GLKRSIVVV 219 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEEecCCccHH---HHHHhhcChh-hhcCeEEEE
Confidence 3456777 88999999999999999999999998654321 1221110 0 011111 111 111110 01100
Q ss_pred -cchhHHHHHH--------HHHHHHhCCCCcEEEEe-----------------CC--CCCCChhhHHHHHHHHHHHHHh-
Q psy5289 612 -ISTFMMEMKE--------TATVIKKCTENSLVIID-----------------EL--GRGTSTFDGFGMACSIARELAS- 662 (813)
Q Consensus 612 -~s~f~~e~~~--------~~~il~~~~~~~LlllD-----------------Ep--~~Gtd~~d~~~i~~~i~~~l~~- 662 (813)
.+.-+..++. ++.-++....+-|+++| || ++|.|+.-... ...+++.+..
T Consensus 220 ~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~-l~~ller~~~~ 298 (438)
T PRK07721 220 ATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAI-LPKLLERTGTN 298 (438)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHH-HHHHHHHhcCC
Confidence 0111111111 11222223566788888 64 56777754443 4567777763
Q ss_pred cCCC-----EEEEEcCChHHHhhcCCCCceEeeEEEEEEE
Q psy5289 663 HRQP-----FTLFATHFHEIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 663 ~~~~-----~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~ 697 (813)
..|. ++++.|||++ ..+++++..+.+||+....+
T Consensus 299 ~~GsIT~~~TVlv~~hdm~-e~i~d~v~~i~dG~Ivls~~ 337 (438)
T PRK07721 299 ASGSITAFYTVLVDGDDMN-EPIADTVRGILDGHFVLDRQ 337 (438)
T ss_pred CCCCeeeEEEEEEECCCCC-chhhhhEEEecCEEEEEecc
Confidence 2465 8999999987 36777777788888876543
No 442
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.20 E-value=2.8e-06 Score=104.09 Aligned_cols=96 Identities=15% Similarity=0.088 Sum_probs=75.0
Q ss_pred HHhcCCchh-HhhccchhHHHHHHHHHHHHhC-CC--CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC
Q psy5289 599 FTRVGAADS-QYRGISTFMMEMKETATVIKKC-TE--NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF 674 (813)
Q Consensus 599 ~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~~-~~--~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~ 674 (813)
+..+|+... +.+..+++|++++|...+++.. .+ +.++|||||++|+|+.+...+.. ++..+.+ .|.++|++||+
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~-~L~~L~~-~G~TVIvVeHd 548 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIN-TLKRLRD-LGNTVIVVEHD 548 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHH-HHHHHHh-CCCEEEEEECC
Confidence 445666432 5677889999988887777764 33 48999999999999999888754 6666776 59999999999
Q ss_pred hHHHhhcCCCCce------EeeEEEEEE
Q psy5289 675 HEIALLSRVIPTF------RNVQVSALE 696 (813)
Q Consensus 675 ~el~~~~~~~~~v------~~~~~~~~~ 696 (813)
.+....+|++..+ .+|++....
T Consensus 549 ~~~i~~aD~vi~LgpgaG~~~G~Iv~~g 576 (924)
T TIGR00630 549 EETIRAADYVIDIGPGAGIHGGEVVASG 576 (924)
T ss_pred HHHHhhCCEEEEecccccCCCCEEeecc
Confidence 9888888888777 777776543
No 443
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.20 E-value=4.8e-06 Score=81.04 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=61.9
Q ss_pred eEEEEccCCCChhHHHhhhhhhhhhh-hccccccCCccchhHHHH--HHHhcCCchhHh--hcc-ch-hHHHHHHHHHHH
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQ--IFTRVGAADSQY--RGI-ST-FMMEMKETATVI 626 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~~~la-q~g~~vpa~~~~~~~~d~--i~~~~~~~d~~~--~~~-s~-f~~e~~~~~~il 626 (813)
+++|+||||+||||++++++...... ..-.++..+......... .+...+..+... ... .. ......+.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 47899999999999999986544321 111222222221111111 111111111110 000 01 111222333444
Q ss_pred HhCCCCcEEEEeCCCCCCChh---------hHHHHHHHHHHHHHhcCCCEEEEEcCChH
Q psy5289 627 KKCTENSLVIIDELGRGTSTF---------DGFGMACSIARELASHRQPFTLFATHFHE 676 (813)
Q Consensus 627 ~~~~~~~LlllDEp~~Gtd~~---------d~~~i~~~i~~~l~~~~~~~~l~~TH~~e 676 (813)
....++.++++|||..-.+.. ........+.+...+ .++++++++|...
T Consensus 81 ~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~vv~~~~~~~ 138 (165)
T cd01120 81 RERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK-GGVTVIFTLQVPS 138 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc-CCceEEEEEecCC
Confidence 455789999999997433221 112333455555544 6899999999754
No 444
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.16 E-value=1.1e-05 Score=84.47 Aligned_cols=126 Identities=16% Similarity=0.084 Sum_probs=68.7
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhh-hhccccccCCccchhHHHHHHHhcCC--chhHhhcc-----------ch
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDSATISVVDQIFTRVGA--ADSQYRGI-----------ST 614 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~l-aq~g~~vpa~~~~~~~~d~i~~~~~~--~d~~~~~~-----------s~ 614 (813)
...|++++|+||+|+|||||..+++.-... ..-+.|+..+...-.+..+ +..+|. .+.+..+. +.
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHH-HHHCCCChhHHHhCCCceEEecccccccc
Confidence 356899999999999999999998643221 2233455444332222222 233442 22211111 11
Q ss_pred hHHHHHHHHHHHHh-C--CCCcEEEEeCCCCCCChhhHHHHHHH--HHHHHHhcCCCEEEEEcCChH
Q psy5289 615 FMMEMKETATVIKK-C--TENSLVIIDELGRGTSTFDGFGMACS--IARELASHRQPFTLFATHFHE 676 (813)
Q Consensus 615 f~~e~~~~~~il~~-~--~~~~LlllDEp~~Gtd~~d~~~i~~~--i~~~l~~~~~~~~l~~TH~~e 676 (813)
....+.++...+.. . .+++++++|||+...+..+...+... .+..+.+ .++++++++|...
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~ 166 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYA 166 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc
Confidence 12233333333322 2 48999999999865444333333221 2333344 5889999999754
No 445
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.14 E-value=3.9e-06 Score=103.01 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=76.0
Q ss_pred HHHhcCCchh-HhhccchhHHHHHHHHHHHHhC-CC--CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcC
Q psy5289 598 IFTRVGAADS-QYRGISTFMMEMKETATVIKKC-TE--NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATH 673 (813)
Q Consensus 598 i~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~~-~~--~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH 673 (813)
.+..+|+.+. +.+...++|++++|...+++.. .+ +.|+|||||++|+|+.+...+.. ++..+.+ .|.++|++||
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~-~L~~L~~-~G~TVIvVeH 549 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIE-TLKHLRD-LGNTLIVVEH 549 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHH-HHHHHHh-CCCEEEEEeC
Confidence 4566777643 6778889999988887777764 44 48999999999999999888755 6666776 6999999999
Q ss_pred ChHHHhhcCCCCce------EeeEEEEEE
Q psy5289 674 FHEIALLSRVIPTF------RNVQVSALE 696 (813)
Q Consensus 674 ~~el~~~~~~~~~v------~~~~~~~~~ 696 (813)
+.+....+|++..+ .+|++....
T Consensus 550 ~~~~i~~aD~vi~LgpgaG~~~G~iv~~g 578 (943)
T PRK00349 550 DEDTIRAADYIVDIGPGAGVHGGEVVASG 578 (943)
T ss_pred CHHHHHhCCEEEEeccccCCCCCEEeecc
Confidence 98888788887777 677776543
No 446
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.11 E-value=2.4e-05 Score=73.35 Aligned_cols=116 Identities=11% Similarity=0.021 Sum_probs=57.3
Q ss_pred ceeEEEEccCCCChhHHHhhhhhhhhhhh-ccccccCCccchh-HHHHHHHhcCCchhHhhccchhHHHH-HHHHHHHHh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IGCFVPCDSATIS-VVDQIFTRVGAADSQYRGISTFMMEM-KETATVIKK 628 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~~~laq-~g~~vpa~~~~~~-~~d~i~~~~~~~d~~~~~~s~f~~e~-~~~~~il~~ 628 (813)
+..++|+||+|+||||+++.++....... ...++.++..... ..... ..............+ .+.......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALAR 75 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999876544332 1122222221111 11100 000111111111111 111111112
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHH-----HHHHHHHhcCCCEEEEEcCC
Q psy5289 629 CTENSLVIIDELGRGTSTFDGFGMAC-----SIARELASHRQPFTLFATHF 674 (813)
Q Consensus 629 ~~~~~LlllDEp~~Gtd~~d~~~i~~-----~i~~~l~~~~~~~~l~~TH~ 674 (813)
..+++++++||+.+-.+......... ....... ..+..+|+++|.
T Consensus 76 ~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 125 (148)
T smart00382 76 KLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKS-EKNLTVILTTND 125 (148)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHh-cCCCEEEEEeCC
Confidence 23369999999988888765443321 1122222 246788888884
No 447
>KOG0063|consensus
Probab=98.05 E-value=1.6e-05 Score=86.22 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=83.1
Q ss_pred CceeEEEEccCCCChhHHHhhhhhhhhhhhccccc-------------cCCccchhH--HHH-------------HHHhc
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFV-------------PCDSATISV--VDQ-------------IFTRV 602 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~v-------------pa~~~~~~~--~d~-------------i~~~~ 602 (813)
..++++.+|.||.|||||+|++++..-.. .|.-+ |.....+.. .+. ...-+
T Consensus 366 dSeiivmlgEngtgkTTfi~mlag~~~pd-~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL 444 (592)
T KOG0063|consen 366 DSEIIVMLGENGTGKTTFIRMLAGRLKPD-EGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPL 444 (592)
T ss_pred CceeEEEEccCCcchhHHHHHHhcCCCCC-ccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhh
Confidence 45899999999999999999997621111 11111 111111111 011 11112
Q ss_pred CCchhHhhccchhH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-h
Q psy5289 603 GAADSQYRGISTFM-MEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-L 680 (813)
Q Consensus 603 ~~~d~~~~~~s~f~-~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~ 680 (813)
...+-+.....+++ +|+++++.+++.-.+.++.++|||..=+|...+...+..+.+.+.. .+.+-.++.||.-.+. +
T Consensus 445 ~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilh-akktafvVEhdfImaTYl 523 (592)
T KOG0063|consen 445 QIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILH-AKKTAFVVEHDFIMATYL 523 (592)
T ss_pred hHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHh-ccchhhhhhhHHHHHHhh
Confidence 22223333334444 5777888888887888999999999999998877766666666665 5778889999976664 4
Q ss_pred cCC
Q psy5289 681 SRV 683 (813)
Q Consensus 681 ~~~ 683 (813)
+++
T Consensus 524 adr 526 (592)
T KOG0063|consen 524 ADR 526 (592)
T ss_pred cce
Confidence 454
No 448
>KOG0065|consensus
Probab=98.03 E-value=8e-06 Score=100.04 Aligned_cols=154 Identities=18% Similarity=0.166 Sum_probs=100.5
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhh---------------------------hhhhcccccc------
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV---------------------------FLAQIGCFVP------ 586 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~---------------------------~laq~g~~vp------ 586 (813)
.+.+|++.-+++|+++++.||.||||||||+.+++.. +.+|...-+|
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 4778888888999999999999999999999986421 1111111111
Q ss_pred -----------CC----ccch----hHHHHHHHhcCCch--------hHhhccchhHHHHHHHHHHHHhCCCCcEEEEeC
Q psy5289 587 -----------CD----SATI----SVVDQIFTRVGAAD--------SQYRGISTFMMEMKETATVIKKCTENSLVIIDE 639 (813)
Q Consensus 587 -----------a~----~~~~----~~~d~i~~~~~~~d--------~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDE 639 (813)
+. ..+. ...|.++.-+|+.. +..+|.| .+|.+|+..+=..+.+++.+.+||
T Consensus 209 TldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvS--GGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 209 TLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVS--GGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred hhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceeccccccccc--CcccceeeeeeeeecCcceeeeec
Confidence 00 0000 13455666666533 3334433 234444444444468999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC--hHHHhhcCCCCceEeeEEEEEE
Q psy5289 640 LGRGTSTFDGFGMACSIARELASHRQPFTLFATHF--HEIALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 640 p~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~--~el~~~~~~~~~v~~~~~~~~~ 696 (813)
+++|+|...+..+..++... ....+.+.+++=|. .+..++.|.+..+..|.....+
T Consensus 287 ~t~GLDSsTal~iik~lr~~-a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~G 344 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQL-AHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQG 344 (1391)
T ss_pred ccccccHHHHHHHHHHHHHH-HhhhcceEEEEeccCChHHHHhhhheeeeeccceEEec
Confidence 99999999999887765554 43368888888887 5677777877666666555444
No 449
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.97 E-value=1.3e-05 Score=81.61 Aligned_cols=114 Identities=13% Similarity=0.105 Sum_probs=56.4
Q ss_pred eEEEEccCCCChhHHHhhhhhhhhhhhcccccc-CCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCCCC
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVP-CDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTEN 632 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~~~laq~g~~vp-a~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~ 632 (813)
+++|+||+||||||+++.+.........+..+- .+..+.. .......+. ...+.....+|... +..+++ .+|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~~~~~i~-q~~vg~~~~~~~~~---i~~aLr--~~p 75 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HESKRSLIN-QREVGLDTLSFENA---LKAALR--QDP 75 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccCccceee-ecccCCCccCHHHH---HHHHhc--CCc
Confidence 689999999999999998643222111111110 0000000 000000000 00111111233222 122222 479
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCC
Q psy5289 633 SLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRV 683 (813)
Q Consensus 633 ~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~ 683 (813)
+++++||| .|... ++.+++. .. .|..++.++|..+.....++
T Consensus 76 d~ii~gEi---rd~e~----~~~~l~~-a~-~G~~v~~t~Ha~~~~~~~~R 117 (198)
T cd01131 76 DVILVGEM---RDLET----IRLALTA-AE-TGHLVMSTLHTNSAAKTIDR 117 (198)
T ss_pred CEEEEcCC---CCHHH----HHHHHHH-HH-cCCEEEEEecCCcHHHHHhH
Confidence 99999999 45432 3444443 33 58899999998766554444
No 450
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.90 E-value=8.1e-06 Score=89.02 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=61.9
Q ss_pred cccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCc-hhHhhccchhHHHHHHH-HH
Q psy5289 547 FKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAA-DSQYRGISTFMMEMKET-AT 624 (813)
Q Consensus 547 l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~-~~ 624 (813)
+....|..++|+||+||||||+++.+...... ..+..+-.+..++.+-. -..+... .....+.+. ..+.+. ..
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~~~~~-~~~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~--~~~~~~l~~ 213 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVDEIPK-DERIITIEDTREIFLPH--PNYVHLFYSKGGQGLAK--VTPKDLLQS 213 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHccCCc-cccEEEEcCccccCCCC--CCEEEEEecCCCCCcCc--cCHHHHHHH
Confidence 44456889999999999999999987432211 11100000000111000 0000000 000001111 112221 12
Q ss_pred HHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCce
Q psy5289 625 VIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTF 687 (813)
Q Consensus 625 il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v 687 (813)
.+ ..+|+.+++|||. +. . ++++++.+.. .+..++.++|..+.....+++..+
T Consensus 214 ~L--r~~pd~ii~gE~r---~~----e-~~~~l~a~~~-g~~~~i~T~Ha~~~~~~~~Rl~~l 265 (308)
T TIGR02788 214 CL--RMRPDRIILGELR---GD----E-AFDFIRAVNT-GHPGSITTLHAGSPEEAFEQLALM 265 (308)
T ss_pred Hh--cCCCCeEEEeccC---CH----H-HHHHHHHHhc-CCCeEEEEEeCCCHHHHHHHHHHH
Confidence 22 3589999999995 22 2 2445666654 233568999998776665555444
No 451
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.81 E-value=1.3e-05 Score=72.52 Aligned_cols=34 Identities=18% Similarity=-0.012 Sum_probs=30.5
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhh
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~ 573 (813)
.+.++++|++.+|++++|+||+||||||+++++.
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 4567889999999999999999999999999964
No 452
>PRK04296 thymidine kinase; Provisional
Probab=97.80 E-value=8.5e-05 Score=75.16 Aligned_cols=144 Identities=13% Similarity=0.097 Sum_probs=76.0
Q ss_pred ceeEEEEccCCCChhHHHhhhhhhhhhhhcc--ccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhC
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG--CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC 629 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~~~laq~g--~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~ 629 (813)
|.+++||||.|+||||++..++.-...+..- .+-|.-..+.+ ...+.+++|..-.. ..... ..+..+...- ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~lg~~~~~-~~~~~-~~~~~~~~~~--~~ 76 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSRIGLSREA-IPVSS-DTDIFELIEE--EG 76 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc-CCcEecCCCCcccc-eEeCC-hHHHHHHHHh--hC
Confidence 6799999999999999988765433222111 11222111111 12345555532110 00001 1111111111 23
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC-----------hHHHhhcCCCCceEeeEEEEEEEC
Q psy5289 630 TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF-----------HEIALLSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 630 ~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~-----------~el~~~~~~~~~v~~~~~~~~~~~ 698 (813)
.+.++|++||... ++ ...+ ..+++.+.. .|.+++++.++ .++..++|.+..++.-.+. -.
T Consensus 77 ~~~dvviIDEaq~-l~---~~~v-~~l~~~l~~-~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~vC~~---Cg 147 (190)
T PRK04296 77 EKIDCVLIDEAQF-LD---KEQV-VQLAEVLDD-LGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKAICVH---CG 147 (190)
T ss_pred CCCCEEEEEcccc-CC---HHHH-HHHHHHHHH-cCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeEEccc---cC
Confidence 4678999999932 22 1223 346666666 69999999998 3455556655444433322 24
Q ss_pred CeEEEEEEecc
Q psy5289 699 DNLVLLYQVKP 709 (813)
Q Consensus 699 ~~i~~~y~l~~ 709 (813)
..-+|.+++..
T Consensus 148 ~~a~~~~r~~~ 158 (190)
T PRK04296 148 RKATMNQRLID 158 (190)
T ss_pred CccceEEEEeC
Confidence 56678888884
No 453
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.77 E-value=0.00033 Score=78.83 Aligned_cols=141 Identities=16% Similarity=0.077 Sum_probs=75.8
Q ss_pred ccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccc--cccCCccchh-HHHHHHHhcCCchh-HhhccchhHHHHHH
Q psy5289 546 YFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC--FVPCDSATIS-VVDQIFTRVGAADS-QYRGISTFMMEMKE 621 (813)
Q Consensus 546 ~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~--~vpa~~~~~~-~~d~i~~~~~~~d~-~~~~~s~f~~e~~~ 621 (813)
.+..+.|+.++|.|+||+||||++++++.... +..|. .+.....++. ++...+..-+.... +....+.-+..++.
T Consensus 150 ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ 228 (432)
T PRK06793 150 MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQL 228 (432)
T ss_pred cceecCCcEEEEECCCCCChHHHHHHHhccCC-CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHH
Confidence 48888999999999999999999999865432 11221 2222222221 11222222222111 11222333445554
Q ss_pred HHHHHHh--------CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 622 TATVIKK--------CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 622 ~~~il~~--------~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
.+..... ..++-|+++|+||++.++. ..+ +..+...-. .|-+..+.||...+.+-+.. ...|.+.
T Consensus 229 ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--rei-sl~~~e~p~-~G~~~~~~s~l~~L~ERag~---~~~GSiT 301 (432)
T PRK06793 229 RAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSV-DIAVKELPI-GGKTLLMESYMKKLLERSGK---TQKGSIT 301 (432)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHH-HHHhcCCCC-CCeeeeeeccchhHHHHhcc---CCCcceE
Confidence 3332222 2688999999998777765 222 222333332 36667777886555544332 3455554
Q ss_pred E
Q psy5289 694 A 694 (813)
Q Consensus 694 ~ 694 (813)
+
T Consensus 302 ~ 302 (432)
T PRK06793 302 G 302 (432)
T ss_pred E
Confidence 4
No 454
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.77 E-value=7e-05 Score=83.39 Aligned_cols=174 Identities=14% Similarity=0.049 Sum_probs=112.5
Q ss_pred cceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-------------------
Q psy5289 519 TGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA------------------- 579 (813)
Q Consensus 519 ~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la------------------- 579 (813)
...+++++..-+- . .+.....+++|++..|++++|.|-.|-|-+.|+..|+++...+
T Consensus 255 ~~vL~V~~L~v~~---~-~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~ 330 (501)
T COG3845 255 EVVLEVEDLSVKD---R-RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRE 330 (501)
T ss_pred CeEEEEeeeEeec---C-CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHH
Confidence 4556666543221 0 1123456899999999999999999999999999997653111
Q ss_pred ---hccccccCCccc------hhHHHH----------------------------HHHhcCCc-hhHhhccchhHHHHHH
Q psy5289 580 ---QIGCFVPCDSAT------ISVVDQ----------------------------IFTRVGAA-DSQYRGISTFMMEMKE 621 (813)
Q Consensus 580 ---q~g~~vpa~~~~------~~~~d~----------------------------i~~~~~~~-d~~~~~~s~f~~e~~~ 621 (813)
..-.+||.+... +++.+. +..++... .+......++|++-+|
T Consensus 331 ~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQ 410 (501)
T COG3845 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQ 410 (501)
T ss_pred HHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCccee
Confidence 112466655421 222221 12222221 1222223456666555
Q ss_pred HHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC-hHHHhhcCCCCceEeeEEEEEEEC
Q psy5289 622 TATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF-HEIALLSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 622 ~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~-~el~~~~~~~~~v~~~~~~~~~~~ 698 (813)
..-+.+ ...+|+|+|+..||+|+|.-....+...+++. ++ .|+.+|++|-+ .|+..++|++..+.+|.+....+.
T Consensus 411 K~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~-r~-~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~ 487 (501)
T COG3845 411 KLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL-RD-AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPP 487 (501)
T ss_pred hhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHH-Hh-cCCEEEEEehhHHHHHHhhheeeeeeCCceeccccc
Confidence 444444 46899999999999999987766666666654 44 59999999888 577789999988888887665443
No 455
>PRK09183 transposase/IS protein; Provisional
Probab=97.69 E-value=0.00014 Score=77.21 Aligned_cols=107 Identities=16% Similarity=0.276 Sum_probs=59.8
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccc---cccCCccchhHHHHHHHhcCCchhHhhccchhHHHHH
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC---FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMK 620 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~---~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~ 620 (813)
+++| +..|+.++|+||+|+|||++...+|..... .|. |+++ ..++..+.... ..+
T Consensus 95 ~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~~~~--------~~l~~~l~~a~--~~~--------- 152 (259)
T PRK09183 95 SLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRFTTA--------ADLLLQLSTAQ--RQG--------- 152 (259)
T ss_pred cCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeH--------HHHHHHHHHHH--HCC---------
Confidence 4455 466889999999999999999999765432 232 2221 11221111000 000
Q ss_pred HHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC
Q psy5289 621 ETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF 674 (813)
Q Consensus 621 ~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~ 674 (813)
....++.. ...++++++||.+...-..+...+...++....+ .+ .+|++|+.
T Consensus 153 ~~~~~~~~~~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~-~~-s~iiTsn~ 205 (259)
T PRK09183 153 RYKTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYE-KG-SMILTSNL 205 (259)
T ss_pred cHHHHHHHHhcCCCEEEEcccccCCCChHHHHHHHHHHHHHHh-cC-cEEEecCC
Confidence 01122222 4578999999998643333444344556655444 34 56777776
No 456
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.69 E-value=3e-05 Score=62.66 Aligned_cols=31 Identities=35% Similarity=0.549 Sum_probs=24.0
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
++.|+. .|.+++|+|||||||||+|.++..+
T Consensus 16 ~~~~~~-~g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 16 TIDFDP-RGDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEeecC-CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 444542 3568999999999999999997543
No 457
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.66 E-value=0.00019 Score=67.88 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.3
Q ss_pred CceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
.+..++|+||.|+||||+++.++...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999986544
No 458
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.62 E-value=4.1e-05 Score=77.19 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=25.0
Q ss_pred ccccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 546 YFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 546 ~l~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.+....|+.++|+|||||||||+++.++..
T Consensus 19 ~~~v~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 19 WLAVEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344566889999999999999999997654
No 459
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00011 Score=81.33 Aligned_cols=93 Identities=15% Similarity=0.144 Sum_probs=54.9
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh---ccccccCCccchhHHHHHH---HhcCCchhHhhccchhHH
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ---IGCFVPCDSATISVVDQIF---TRVGAADSQYRGISTFMM 617 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq---~g~~vpa~~~~~~~~d~i~---~~~~~~d~~~~~~s~f~~ 617 (813)
+.++..+.|.+++++||||+||||++..++......+ ...++..+..+++-.+++- ..+|+.-........
T Consensus 129 ~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~--- 205 (374)
T PRK14722 129 SEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD--- 205 (374)
T ss_pred CCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCccc---
Confidence 3334445678999999999999999999876543321 1234555555555444432 233332111111111
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCC
Q psy5289 618 EMKETATVIKKCTENSLVIIDELGRG 643 (813)
Q Consensus 618 e~~~~~~il~~~~~~~LlllDEp~~G 643 (813)
+...+....+.++||+|+||+.
T Consensus 206 ----l~~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 206 ----LQLALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred ----HHHHHHHhcCCCEEEEcCCCCC
Confidence 2234445567899999999755
No 460
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.60 E-value=0.00049 Score=81.38 Aligned_cols=114 Identities=16% Similarity=0.131 Sum_probs=71.8
Q ss_pred hhHHHHHH-HHHHHHhCC----CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceE
Q psy5289 614 TFMMEMKE-TATVIKKCT----ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFR 688 (813)
Q Consensus 614 ~f~~e~~~-~~~il~~~~----~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~ 688 (813)
.+++++++ ++.++..+. +|+++|+|||++|+|+.....+.. ++..+.+ +.+||++||++.++..++++..+.
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~-~l~~l~~--~~~vi~iTH~~~~~~~ad~~~~l~ 516 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAK-KLAQLSE--RHQVLCVTHLPQVAAHADAHFKVE 516 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc--CCEEEEEEChHHHHHhcCeEEEEE
Confidence 34445544 444434433 469999999999999988777755 4555553 789999999999888877665444
Q ss_pred eeEEEEEEECCeEEEEEEeccCCCCCcHHHHHHHHCC---CCHHHHHHHHHHH
Q psy5289 689 NVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAG---YPEDMLEQARDLM 738 (813)
Q Consensus 689 ~~~~~~~~~~~~i~~~y~l~~G~~~~s~gi~vA~~ag---~p~~vi~~A~~~~ 738 (813)
++.. ++...+-...| .| .-==-++|+|.| +-+.-++.|++++
T Consensus 517 k~~~----~~~t~s~i~~L-~~---~~r~~EiArml~G~~~t~~~~~~A~~ll 561 (563)
T TIGR00634 517 KEGL----DGRTATRVRPL-SG---EERVAELARMLAGLEKSDLTLAHAQELL 561 (563)
T ss_pred EccC----CCcEEEEEEEC-Cc---cHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 4311 11223322233 22 223357999984 3566677777654
No 461
>PRK10869 recombination and repair protein; Provisional
Probab=97.57 E-value=0.00052 Score=80.65 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhC----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 618 EMKETATVIKKC----TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 618 e~~~~~~il~~~----~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
++++++.++..+ .+|+++|+|||++|+|+..+..++. ++..+.+ ++++|++||++.++..++++..|..+.
T Consensus 435 e~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~-~l~~l~~--~~qvi~iTH~~~~~~~ad~~~~v~k~~-- 509 (553)
T PRK10869 435 ELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGK-LLRQLGE--STQVMCVTHLPQVAGCGHQHFFVSKET-- 509 (553)
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc--CCEEEEEecCHHHHHhCCEEEEEeccc--
Confidence 444444444444 3689999999999999987777654 5555554 688999999999988887654443311
Q ss_pred EEEECC-eEEEEEEeccCCCCCcHHHHHHHHCC---CCHHHHHHHHHHH
Q psy5289 694 ALEQED-NLVLLYQVKPGSCVKSYGVHCAKMAG---YPEDMLEQARDLM 738 (813)
Q Consensus 694 ~~~~~~-~i~~~y~l~~G~~~~s~gi~vA~~ag---~p~~vi~~A~~~~ 738 (813)
+++ ..+-.-.| .+.-==-++|+|.| +.+.-+..|++++
T Consensus 510 ---~~~~t~s~i~~L----~~~~R~~EiARMl~G~~~t~~~~~~A~eLl 551 (553)
T PRK10869 510 ---DGGMTETHMQPL----DKKARLQELARLLGGSEVTRNTLANAKELL 551 (553)
T ss_pred ---cCCeeeEEEEEC----ChhHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 111 22221222 22333457999984 3567788887764
No 462
>KOG0063|consensus
Probab=97.49 E-value=0.00024 Score=77.50 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=53.0
Q ss_pred cchhH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCc
Q psy5289 612 ISTFM-MEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPT 686 (813)
Q Consensus 612 ~s~f~-~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~ 686 (813)
....+ +|.++.+.++......++.++|||.+-+|...+...+..|.. +.. ...-++++.||+.+..+......
T Consensus 211 ~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRs-l~~-p~~YiIVVEHDLsVLDylSDFiC 284 (592)
T KOG0063|consen 211 VEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRS-LIN-PDRYIIVVEHDLSVLDYLSDFIC 284 (592)
T ss_pred hhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHH-hhC-CCCeEEEEEeechHHHhhhccee
Confidence 33444 355555555556688999999999999998887777665544 554 57899999999999886654443
No 463
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.49 E-value=0.00015 Score=82.72 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=52.4
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhhhhhhc---cccccCCccchhHHHHHH---HhcCCchhHhhccchhHHHHHHHH
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQI---GCFVPCDSATISVVDQIF---TRVGAADSQYRGISTFMMEMKETA 623 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~~laq~---g~~vpa~~~~~~~~d~i~---~~~~~~d~~~~~~s~f~~e~~~~~ 623 (813)
+.|.+++++||||+||||++..++......+. -..++++..+++..+++- ..+|..-...... .+..
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~-------~Dl~ 326 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDA-------ADLR 326 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCc-------hhHH
Confidence 34689999999999999999999865543321 235677776666655442 2233211111111 1122
Q ss_pred HHHHhCCCCcEEEEeCCCCC
Q psy5289 624 TVIKKCTENSLVIIDELGRG 643 (813)
Q Consensus 624 ~il~~~~~~~LlllDEp~~G 643 (813)
..+..+.+.+++++|.+|++
T Consensus 327 ~aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 327 LALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred HHHHhccCCCeEEeCCCCcC
Confidence 23344556789999998655
No 464
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.00031 Score=79.03 Aligned_cols=91 Identities=19% Similarity=0.263 Sum_probs=56.0
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhhhhh---hccccccCCccchhHHHHHH---HhcCCchhHhhccchhHHHHHHHH
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLA---QIGCFVPCDSATISVVDQIF---TRVGAADSQYRGISTFMMEMKETA 623 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~~la---q~g~~vpa~~~~~~~~d~i~---~~~~~~d~~~~~~s~f~~e~~~~~ 623 (813)
+.|++++++||||+||||+++.++....+. ..+..+.++..+++.++++- ..+|+.-...... .+ +.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~----~d---l~ 261 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDI----AD---LQ 261 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCH----HH---HH
Confidence 457899999999999999999987643322 22345566666777665532 2334322111111 11 23
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChhhH
Q psy5289 624 TVIKKCTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 624 ~il~~~~~~~LlllDEp~~Gtd~~d~ 649 (813)
..+....+.+++++|.+ |.+..+.
T Consensus 262 ~al~~l~~~d~VLIDTa--Grsqrd~ 285 (420)
T PRK14721 262 LMLHELRGKHMVLIDTV--GMSQRDQ 285 (420)
T ss_pred HHHHHhcCCCEEEecCC--CCCcchH
Confidence 34445678899999986 5555553
No 465
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.46 E-value=0.00066 Score=71.31 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=21.8
Q ss_pred ceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
|.+.+|+||.|+|||||.-+++..+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999987654
No 466
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.45 E-value=0.00047 Score=64.60 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=53.9
Q ss_pred EEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCCCCcE
Q psy5289 555 NLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSL 634 (813)
Q Consensus 555 ~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~~L 634 (813)
++|+||.|+||||+.+.++... |..+ ..+. ..+............+..+..-+.....|.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~~~----~~i~----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GFPF----IEID----------GSELISSYAGDSEQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TSEE----EEEE----------TTHHHTSSTTHHHHHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----cccc----cccc----------cccccccccccccccccccccccccccccee
Confidence 5799999999999999986542 2100 0000 0001100111112222222222222224899
Q ss_pred EEEeCCCCCCChh------hHHHHHHHHHHHHHhcC----CCEEEEEcCChHH
Q psy5289 635 VIIDELGRGTSTF------DGFGMACSIARELASHR----QPFTLFATHFHEI 677 (813)
Q Consensus 635 lllDEp~~Gtd~~------d~~~i~~~i~~~l~~~~----~~~~l~~TH~~el 677 (813)
+++||.-.-.... ....+...++..+.... +..+|++|++.+.
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~ 114 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDK 114 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGG
T ss_pred eeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhh
Confidence 9999985544332 23344455666665422 3577888888543
No 467
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.00038 Score=83.11 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=61.0
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh---ccccccCCccchhHHHHHH---HhcCCchhHhhccch
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ---IGCFVPCDSATISVVDQIF---TRVGAADSQYRGIST 614 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq---~g~~vpa~~~~~~~~d~i~---~~~~~~d~~~~~~s~ 614 (813)
+.++.++....|++++++||||+||||++..++......+ .-.++.++..+++..+++- ..+|+.-....
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~---- 249 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK---- 249 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC----
Confidence 3445555555688999999999999999999876543222 1135667766766665543 23443221111
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEeCCCCCC
Q psy5289 615 FMMEMKETATVIKKCTENSLVIIDELGRGT 644 (813)
Q Consensus 615 f~~e~~~~~~il~~~~~~~LlllDEp~~Gt 644 (813)
.-..+...+..+.+.++||+|=||+.-
T Consensus 250 ---~~~~l~~al~~~~~~D~VLIDTAGRs~ 276 (767)
T PRK14723 250 ---DAADLRFALAALGDKHLVLIDTVGMSQ 276 (767)
T ss_pred ---CHHHHHHHHHHhcCCCEEEEeCCCCCc
Confidence 122344555566677999999997654
No 468
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.43 E-value=0.00021 Score=79.13 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=55.5
Q ss_pred CceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCc-cchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhC
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS-ATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC 629 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~-~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~ 629 (813)
.+.+++|+||+||||||+|+.+.........+..+-.+. .++. .......+. ...+....-+|... +..+++
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-~~~~~~~i~-q~evg~~~~~~~~~---l~~~lr-- 193 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-HRNKRSLIN-QREVGLDTLSFANA---LRAALR-- 193 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-ccCccceEE-ccccCCCCcCHHHH---HHHhhc--
Confidence 457899999999999999998754221111111110000 0000 000000000 00011111122211 222333
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh
Q psy5289 630 TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL 679 (813)
Q Consensus 630 ~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~ 679 (813)
.+|+++++||+ .|+... ...++. .. .|..++.++|-.+...
T Consensus 194 ~~pd~i~vgEi---rd~~~~----~~~l~a-a~-tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 194 EDPDVILIGEM---RDLETV----ELALTA-AE-TGHLVFGTLHTNSAAQ 234 (343)
T ss_pred cCCCEEEEeCC---CCHHHH----HHHHHH-HH-cCCcEEEEEcCCCHHH
Confidence 59999999999 565432 223443 33 5888899999754443
No 469
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.41 E-value=0.00043 Score=65.03 Aligned_cols=114 Identities=15% Similarity=0.159 Sum_probs=55.7
Q ss_pred CceeEEEEccCCCChhHHHhhhhhhhhhh--------hccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHH-HH
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVSVFLA--------QIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEM-KE 621 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~~~la--------q~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~-~~ 621 (813)
++.+++|+||.|+||||+++.++.-.... .+....|.....-.+...+...++....- .....++ ..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCHHHHHHH
Confidence 45789999999999999999986543211 11122222222334556666666643222 1111222 23
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC
Q psy5289 622 TATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF 674 (813)
Q Consensus 622 ~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~ 674 (813)
+...+... ...+|++||.-. +. + ..... .+..+.+..+..++++.+.
T Consensus 79 ~~~~l~~~-~~~~lviDe~~~-l~--~-~~~l~-~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRR-RVVLLVIDEADH-LF--S-DEFLE-FLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHC-TEEEEEEETTHH-HH--T-HHHHH-HHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHhc-CCeEEEEeChHh-cC--C-HHHHH-HHHHHHhCCCCeEEEEECh
Confidence 33333332 236999999822 10 1 12222 2333444457777777654
No 470
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.41 E-value=0.0027 Score=72.16 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=30.1
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.+.+++ +.+..|+.++|.||||+|||||+++++..
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 455666 88899999999999999999999998653
No 471
>PRK06526 transposase; Provisional
Probab=97.37 E-value=0.00051 Score=72.61 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=57.3
Q ss_pred CceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCC
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCT 630 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~ 630 (813)
.++-++|+||.|+|||++...++.-.. +.|..|- +.-...++..+.... . ..++ ...+....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~--~~g~~v~-----f~t~~~l~~~l~~~~--~--~~~~-------~~~l~~l~ 158 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC--QAGHRVL-----FATAAQWVARLAAAH--H--AGRL-------QAELVKLG 158 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH--HCCCchh-----hhhHHHHHHHHHHHH--h--cCcH-------HHHHHHhc
Confidence 356699999999999999999875443 2232221 111122333322110 0 0111 12233345
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF 674 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~ 674 (813)
+++|||+||++.--...+...+...++....+ +..+|++|+.
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~--~~s~IitSn~ 200 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYE--RASLIVTSNK 200 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHh--cCCEEEEcCC
Confidence 78999999998653333444444555554443 2457888886
No 472
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.32 E-value=0.002 Score=67.33 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=25.0
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhh
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVF 577 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~ 577 (813)
+..|+++.|+||+|+||||++.+++....
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~ 44 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQ 44 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHee
Confidence 45689999999999999999999976543
No 473
>PRK06893 DNA replication initiation factor; Validated
Probab=97.31 E-value=0.00064 Score=70.91 Aligned_cols=94 Identities=16% Similarity=0.212 Sum_probs=54.4
Q ss_pred eeEEEEccCCCChhHHHhhhhhhhhhhhcc-ccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCCC
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVSVFLAQIG-CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTE 631 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~~~laq~g-~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~ 631 (813)
..+.|.||.|+|||+|++++|.-..-.+.. .|++.... ..+.. .++....+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~----------------------~~~~~------~~~~~~~~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS----------------------QYFSP------AVLENLEQ 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh----------------------hhhhH------HHHhhccc
Confidence 468999999999999999997654322111 12222100 00000 12333457
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCCh
Q psy5289 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFH 675 (813)
Q Consensus 632 ~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~ 675 (813)
.++++|||+.......+.......++..+.+ .|.+++++|++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~-~~~~illits~~ 134 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKE-QGKTLLLISADC 134 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHH-cCCcEEEEeCCC
Confidence 7999999998765332323233456666665 466666666654
No 474
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.30 E-value=0.00012 Score=82.41 Aligned_cols=34 Identities=18% Similarity=0.087 Sum_probs=30.8
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhh
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+..++++++.+|++++|+||+||||||+|| .++
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr-~~l 53 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA-ENK 53 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh-cCC
Confidence 5678999999999999999999999999999 443
No 475
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.29 E-value=0.0014 Score=69.69 Aligned_cols=90 Identities=22% Similarity=0.270 Sum_probs=50.4
Q ss_pred CceeEEEEccCCCChhHHHhhhhhhhhh-hhccccccCCccchhHHHHHHHh---cCCchhHhhccchhHHHHHHHHHHH
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDSATISVVDQIFTR---VGAADSQYRGISTFMMEMKETATVI 626 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~~~l-aq~g~~vpa~~~~~~~~d~i~~~---~~~~d~~~~~~s~f~~e~~~~~~il 626 (813)
+++.++++||||+||||+++.++..... .....++-++..+++.+.++-+. ++..-..... ...+.+...-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~----~~~l~~~l~~l 149 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD----EAAMTRALTYF 149 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCC----HHHHHHHHHHH
Confidence 5689999999999999999998754321 11223444544455555544332 2221111111 11222222222
Q ss_pred HhCCCCcEEEEeCCCCCC
Q psy5289 627 KKCTENSLVIIDELGRGT 644 (813)
Q Consensus 627 ~~~~~~~LlllDEp~~Gt 644 (813)
....+.+++|+|-||+.-
T Consensus 150 ~~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 150 KEEARVDYILIDTAGKNY 167 (270)
T ss_pred HhcCCCCEEEEECCCCCc
Confidence 233467999999998864
No 476
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.29 E-value=0.00046 Score=81.88 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=53.6
Q ss_pred ccchhHHHHHHHHHHHHhC-----------CCCcEEEEeCCC-CCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH
Q psy5289 611 GISTFMMEMKETATVIKKC-----------TENSLVIIDELG-RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA 678 (813)
Q Consensus 611 ~~s~f~~e~~~~~~il~~~-----------~~~~LlllDEp~-~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~ 678 (813)
...++|+++++...++... .+|+++|||||+ +|+|+.....+.. ++..+ + |.++|++||+.++.
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~-~l~~~-~--~~~iiiish~~~~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLS-ILDSL-K--DTNVFVISHKDHDP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHH-HHHhC-C--CCeEEEEECchhch
Confidence 3467777777755554321 489999999998 6799977666644 44444 3 78999999998888
Q ss_pred hhcCCCCceEe
Q psy5289 679 LLSRVIPTFRN 689 (813)
Q Consensus 679 ~~~~~~~~v~~ 689 (813)
..++++..+.+
T Consensus 541 ~~~d~~~~l~~ 551 (562)
T PHA02562 541 QKFDRHLKMEK 551 (562)
T ss_pred hhhhcEEEEEE
Confidence 77777655554
No 477
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.0029 Score=69.97 Aligned_cols=89 Identities=21% Similarity=0.278 Sum_probs=49.8
Q ss_pred ceeEEEEccCCCChhHHHhhhhhhhhhhhcc---ccccCCccchhHHHHHHH---hcCCchhHhhccchhHHHHHHHHHH
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG---CFVPCDSATISVVDQIFT---RVGAADSQYRGISTFMMEMKETATV 625 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~~~laq~g---~~vpa~~~~~~~~d~i~~---~~~~~d~~~~~~s~f~~e~~~~~~i 625 (813)
+.+++|+||||+||||++..+|.... ..| .++-++..+++-++++-+ .++..-..... ..++.+....
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d----~~~L~~aL~~ 314 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD----EAAMTRALTY 314 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCC----HHHHHHHHHH
Confidence 46899999999999999999875332 223 244555555555555443 23322110111 1222222222
Q ss_pred HHhCCCCcEEEEeCCCCCCCh
Q psy5289 626 IKKCTENSLVIIDELGRGTST 646 (813)
Q Consensus 626 l~~~~~~~LlllDEp~~Gtd~ 646 (813)
+....+.++||+|-||+.-..
T Consensus 315 lk~~~~~DvVLIDTaGRs~kd 335 (436)
T PRK11889 315 FKEEARVDYILIDTAGKNYRA 335 (436)
T ss_pred HHhccCCCEEEEeCccccCcC
Confidence 222235799999999875543
No 478
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.27 E-value=0.0016 Score=72.59 Aligned_cols=120 Identities=18% Similarity=0.127 Sum_probs=63.4
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhh-hccccccCCccchhHHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHH
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFTRVGAA-DSQYRGISTFMMEMKETATVI 626 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~la-q~g~~vpa~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il 626 (813)
+..|++++|.||+|+|||||+.+++...... .-..|+..+.. ...+..-..++|.. +++.....+. +.++...+
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg~~~~~l~l~~e~~---le~I~~~i 154 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLGISTENLYLLAETN---LEDILASI 154 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcCCCcccEEEEccCc---HHHHHHHH
Confidence 3568999999999999999999987543221 12234433321 12222233456642 2221111111 22222222
Q ss_pred HhCCCCcEEEEeCCCCC----CC--h---hhHHHHHHHHHHHHHhcCCCEEEEEcCC
Q psy5289 627 KKCTENSLVIIDELGRG----TS--T---FDGFGMACSIARELASHRQPFTLFATHF 674 (813)
Q Consensus 627 ~~~~~~~LlllDEp~~G----td--~---~d~~~i~~~i~~~l~~~~~~~~l~~TH~ 674 (813)
. ..++++|++|+...= .+ + .....++..+.+...+ .+++++++.|-
T Consensus 155 ~-~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~-~~itvilvghv 209 (372)
T cd01121 155 E-ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKE-RNIPIFIVGHV 209 (372)
T ss_pred H-hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHH-cCCeEEEEeec
Confidence 2 258999999997321 11 1 1112233344444444 78999999885
No 479
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.24 E-value=0.0023 Score=68.20 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.1
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+.+++|+||||+||||+++.++.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34899999999999999998753
No 480
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.23 E-value=0.00093 Score=70.07 Aligned_cols=105 Identities=21% Similarity=0.204 Sum_probs=61.0
Q ss_pred eeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCCCC
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTEN 632 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~ 632 (813)
..+++.||.|+|||+|+.+|+.-... .|..| .-++ +..++.++.. +|...-.....++......
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v----~~it-~~~l~~~l~~---------~~~~~~~~~~~~l~~l~~~ 163 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL--RGKSV----LIIT-VADIMSAMKD---------TFSNSETSEEQLLNDLSNV 163 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh--cCCeE----EEEE-HHHHHHHHHH---------HHhhccccHHHHHHHhccC
Confidence 36899999999999999998764332 23211 0111 1223322211 1100000112344445689
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC
Q psy5289 633 SLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF 674 (813)
Q Consensus 633 ~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~ 674 (813)
+||+|||+|.-..+.....+...|+.+-.. .+.+++++|-.
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~-~~~~tiitSNl 204 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSS-SKRPTGMLTNS 204 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCCEEEeCCC
Confidence 999999998876554455566777776444 35677888875
No 481
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.23 E-value=0.0014 Score=74.56 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=50.2
Q ss_pred CceeEEEEccCCCChhHHHhhhhhhhh-hh--hccccccCCccchhHHHHHHH---hcCCchhHhhccchhHHHHHHHHH
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVSVF-LA--QIGCFVPCDSATISVVDQIFT---RVGAADSQYRGISTFMMEMKETAT 624 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~~~-la--q~g~~vpa~~~~~~~~d~i~~---~~~~~d~~~~~~s~f~~e~~~~~~ 624 (813)
.|++++++||+|+||||++-.+|.... .. .-..++.++..+.+-.+.+.+ .++..-..... ..++..
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~-------~~~l~~ 292 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYD-------PKELAK 292 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCC-------HHhHHH
Confidence 367999999999999999888765443 21 122345555544443333322 23322111111 123344
Q ss_pred HHHhCCCCcEEEEeCCCCCC
Q psy5289 625 VIKKCTENSLVIIDELGRGT 644 (813)
Q Consensus 625 il~~~~~~~LlllDEp~~Gt 644 (813)
.+....+.++||+|.||+.-
T Consensus 293 ~l~~~~~~DlVlIDt~G~~~ 312 (424)
T PRK05703 293 ALEQLRDCDVILIDTAGRSQ 312 (424)
T ss_pred HHHHhCCCCEEEEeCCCCCC
Confidence 44555678999999997643
No 482
>PRK03918 chromosome segregation protein; Provisional
Probab=97.23 E-value=0.00067 Score=84.96 Aligned_cols=73 Identities=10% Similarity=0.007 Sum_probs=52.2
Q ss_pred chhHHHHHHHHHHH-------HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCC
Q psy5289 613 STFMMEMKETATVI-------KKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIP 685 (813)
Q Consensus 613 s~f~~e~~~~~~il-------~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~ 685 (813)
.++|+++++...+. ..+.+|+++|+|||++|+|+.....+...+. .+.. .+.++|++||++++...++++.
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~-~~~~-~~~~iiiith~~~~~~~~d~~~ 864 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIME-RYLR-KIPQVIIVSHDEELKDAADYVI 864 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHH-HHHh-cCCEEEEEECCHHHHHhCCeEE
Confidence 45666666632221 2357899999999999999988777766444 4444 4678999999999888777654
Q ss_pred ce
Q psy5289 686 TF 687 (813)
Q Consensus 686 ~v 687 (813)
.|
T Consensus 865 ~l 866 (880)
T PRK03918 865 RV 866 (880)
T ss_pred EE
Confidence 44
No 483
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.22 E-value=0.0035 Score=65.24 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=23.0
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhh
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
...|++++|.||+|+|||||..+++.
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~ 42 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAY 42 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHH
Confidence 45789999999999999999998754
No 484
>PRK01156 chromosome segregation protein; Provisional
Probab=97.21 E-value=0.00078 Score=84.42 Aligned_cols=78 Identities=18% Similarity=0.179 Sum_probs=55.5
Q ss_pred ccchhHHHHHHHHHHH-------HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC-CEEEEEcCChHHHhhcC
Q psy5289 611 GISTFMMEMKETATVI-------KKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQ-PFTLFATHFHEIALLSR 682 (813)
Q Consensus 611 ~~s~f~~e~~~~~~il-------~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~-~~~l~~TH~~el~~~~~ 682 (813)
+...+|+|+++...++ ..+.+|++++|||||+|+|+.....+...+...+....+ .++|++||++++...++
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 4566788887654432 235789999999999999998877765544434444223 47999999999988887
Q ss_pred CCCceE
Q psy5289 683 VIPTFR 688 (813)
Q Consensus 683 ~~~~v~ 688 (813)
++..|.
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 765443
No 485
>PRK06921 hypothetical protein; Provisional
Probab=97.21 E-value=0.0017 Score=69.31 Aligned_cols=101 Identities=13% Similarity=0.127 Sum_probs=58.3
Q ss_pred ceeEEEEccCCCChhHHHhhhhhhhhhh--hccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhC
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVSVFLA--QIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC 629 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~~~la--q~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~ 629 (813)
+.-++++||.|+|||.|+.+|+....-. .-..|++. ..++..+. + .| ......+...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~--------~~l~~~l~--~-------~~----~~~~~~~~~~ 175 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF--------VEGFGDLK--D-------DF----DLLEAKLNRM 175 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH--------HHHHHHHH--H-------HH----HHHHHHHHHh
Confidence 4679999999999999999987654321 11223332 11222210 0 01 1112234445
Q ss_pred CCCcEEEEeCCCC---CCCh--hhHHHHHHHHHHHHHhcCCCEEEEEcCC
Q psy5289 630 TENSLVIIDELGR---GTST--FDGFGMACSIARELASHRQPFTLFATHF 674 (813)
Q Consensus 630 ~~~~LlllDEp~~---Gtd~--~d~~~i~~~i~~~l~~~~~~~~l~~TH~ 674 (813)
.+.+|||||+.+. |+.. .........++..... .+..+|++|+.
T Consensus 176 ~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~-~~k~tIitsn~ 224 (266)
T PRK06921 176 KKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYL-NHKPILISSEL 224 (266)
T ss_pred cCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHH-CCCCEEEECCC
Confidence 6889999999955 5432 1122233456666554 46678889886
No 486
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.0016 Score=74.48 Aligned_cols=87 Identities=20% Similarity=0.265 Sum_probs=51.3
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhhhhhh---ccccccCCccchhHHHHHHHh---cCCchhHhhccchhHHHHHHHH
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ---IGCFVPCDSATISVVDQIFTR---VGAADSQYRGISTFMMEMKETA 623 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~~laq---~g~~vpa~~~~~~~~d~i~~~---~~~~d~~~~~~s~f~~e~~~~~ 623 (813)
..|++++|+||+|+||||++..++......+ -..++..+...++-.+++... ++..-. . . .....+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~----~-a--~d~~~L~ 420 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH----E-A--DSAESLL 420 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE----e-c--CcHHHHH
Confidence 3578999999999999999988876433322 123455555444443433322 121000 0 0 0112334
Q ss_pred HHHHhCCCCcEEEEeCCCCC
Q psy5289 624 TVIKKCTENSLVIIDELGRG 643 (813)
Q Consensus 624 ~il~~~~~~~LlllDEp~~G 643 (813)
.++....+.++||+|.||.+
T Consensus 421 ~aL~~l~~~DLVLIDTaG~s 440 (559)
T PRK12727 421 DLLERLRDYKLVLIDTAGMG 440 (559)
T ss_pred HHHHHhccCCEEEecCCCcc
Confidence 45555567899999999876
No 487
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.20 E-value=0.00076 Score=86.53 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=24.2
Q ss_pred cccCCceeEEEEccCCCChhHHHhhhhh
Q psy5289 547 FKSGEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 547 l~~~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+..+++++++|+||+|+||||++|.++.
T Consensus 202 l~~~~~~vvgI~G~gGiGKTTLA~~l~~ 229 (1153)
T PLN03210 202 LESEEVRMVGIWGSSGIGKTTIARALFS 229 (1153)
T ss_pred cccCceEEEEEEcCCCCchHHHHHHHHH
Confidence 4456789999999999999999999853
No 488
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.19 E-value=0.0022 Score=73.57 Aligned_cols=121 Identities=16% Similarity=0.120 Sum_probs=64.4
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhh-hccccccCCccchhHHHHHHHhcCCch-hHhhccchhHHHHHHHHHHH
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFTRVGAAD-SQYRGISTFMMEMKETATVI 626 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~la-q~g~~vpa~~~~~~~~d~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il 626 (813)
...|++++|.|++|+|||||+.+++...... .-..|+-.+.. ...+..-..++|... ++.--..+ .+.++...+
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-~~qi~~ra~rlg~~~~~l~~~~e~---~~~~I~~~i 166 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-LQQIKMRAIRLGLPEPNLYVLSET---NWEQICANI 166 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-HHHHHHHHHHcCCChHHeEEcCCC---CHHHHHHHH
Confidence 4578999999999999999999986543221 11234433221 111222234555421 11111011 122333333
Q ss_pred HhCCCCcEEEEeCCCCCCC---------hhhHHHHHHHHHHHHHhcCCCEEEEEcCCh
Q psy5289 627 KKCTENSLVIIDELGRGTS---------TFDGFGMACSIARELASHRQPFTLFATHFH 675 (813)
Q Consensus 627 ~~~~~~~LlllDEp~~Gtd---------~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~ 675 (813)
. ..+++++++|....=.. ..+...++..+.+...+ .|+++++++|..
T Consensus 167 ~-~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~-~giTvllt~hvt 222 (454)
T TIGR00416 167 E-EENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKT-RGIAIFIVGHVT 222 (454)
T ss_pred H-hcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHH-hCCEEEEEeccc
Confidence 2 25789999998753211 11122333344444444 799999999963
No 489
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.13 E-value=0.0002 Score=72.78 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=19.7
Q ss_pred eEEEEccCCCChhHHHhhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~ 575 (813)
+++|+||+||||||+.+.+..+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998654
No 490
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.13 E-value=0.00095 Score=71.85 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=50.1
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhhhhh---hccccccCCccchhHHHHHHH---hcCCchhHhhccchhHHHHHHHH
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLA---QIGCFVPCDSATISVVDQIFT---RVGAADSQYRGISTFMMEMKETA 623 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~~la---q~g~~vpa~~~~~~~~d~i~~---~~~~~d~~~~~~s~f~~e~~~~~ 623 (813)
..+.+++|+||+|+||||++..++...... .-..++.++....+..+.+.. .++..-.... .-..+.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~-------~~~~l~ 264 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVAR-------DPKELR 264 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccC-------CHHHHH
Confidence 357899999999999999998876544322 222456666655444443322 1222111111 112234
Q ss_pred HHHHhCCCCcEEEEeCCC
Q psy5289 624 TVIKKCTENSLVIIDELG 641 (813)
Q Consensus 624 ~il~~~~~~~LlllDEp~ 641 (813)
..+..+.+.++||+|.||
T Consensus 265 ~~l~~~~~~d~vliDt~G 282 (282)
T TIGR03499 265 KALDRLRDKDLILIDTAG 282 (282)
T ss_pred HHHHHccCCCEEEEeCCC
Confidence 445555678999999986
No 491
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.13 E-value=0.0023 Score=72.03 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.8
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+.-++|.||+|+||||+.|.++..
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999998653
No 492
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.12 E-value=0.0022 Score=73.55 Aligned_cols=120 Identities=21% Similarity=0.171 Sum_probs=64.7
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhh-hccccccCCccchhHHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHH
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFTRVGAA-DSQYRGISTFMMEMKETATVI 626 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~la-q~g~~vpa~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il 626 (813)
...|++++|.||.|+|||||+.+++...... .-..|+..+.. ...+..-..++|.. +++.-...+ .+.++...+
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees-~~qi~~ra~rlg~~~~~l~~~~e~---~l~~i~~~i 152 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES-ASQIKLRAERLGLPSDNLYLLAET---NLEAILATI 152 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc-HHHHHHHHHHcCCChhcEEEeCCC---CHHHHHHHH
Confidence 3468999999999999999999987644321 12244443322 11222224556542 111110001 122222222
Q ss_pred HhCCCCcEEEEeCCCCCCCh---------hhHHHHHHHHHHHHHhcCCCEEEEEcCC
Q psy5289 627 KKCTENSLVIIDELGRGTST---------FDGFGMACSIARELASHRQPFTLFATHF 674 (813)
Q Consensus 627 ~~~~~~~LlllDEp~~Gtd~---------~d~~~i~~~i~~~l~~~~~~~~l~~TH~ 674 (813)
. ..++++|++|++..-.+. .....++..+.+...+ .++++++++|-
T Consensus 153 ~-~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~-~~itvilv~hv 207 (446)
T PRK11823 153 E-EEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQ-RGIAVFLVGHV 207 (446)
T ss_pred H-hhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeec
Confidence 2 247899999998542211 1112233345554444 79999999994
No 493
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.12 E-value=0.0042 Score=63.64 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=29.0
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhh-hccccccCCc
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDS 589 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~la-q~g~~vpa~~ 589 (813)
+..|+++.|+||+|+||||+.-+++...... .-..|+..+.
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3568999999999999999998876544322 2334555543
No 494
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.11 E-value=0.002 Score=68.83 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=26.9
Q ss_pred cccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 543 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 543 n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
+++.-....|++++|+||.|+||||++.+++...
T Consensus 21 d~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 21 NKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3433345678999999999999999999986544
No 495
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.09 E-value=0.00096 Score=84.75 Aligned_cols=72 Identities=14% Similarity=-0.077 Sum_probs=53.0
Q ss_pred hhccchhHHHHHHHHHHHHh-C----------CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH
Q psy5289 609 YRGISTFMMEMKETATVIKK-C----------TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEI 677 (813)
Q Consensus 609 ~~~~s~f~~e~~~~~~il~~-~----------~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el 677 (813)
.....++|+|+..+..+... + .+|+++||||||.|+|+.....+ ..++..+.. .|++|+++||+.++
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~-~~~l~~l~~-~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRA-IGILDAIRE-GSKMIGIISHVPEF 1022 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCcHHH
Confidence 34567888888765443322 2 27899999999999999766665 446666776 68999999999988
Q ss_pred HhhcC
Q psy5289 678 ALLSR 682 (813)
Q Consensus 678 ~~~~~ 682 (813)
.....
T Consensus 1023 ~~~~~ 1027 (1042)
T TIGR00618 1023 RERIP 1027 (1042)
T ss_pred HHhhC
Confidence 76443
No 496
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0029 Score=70.71 Aligned_cols=87 Identities=20% Similarity=0.279 Sum_probs=50.8
Q ss_pred CceeEEEEccCCCChhHHHhhhhhhhhhhh--cc---ccccCCccchhHHHHH---HHhcCCchhHhhccchhHHHHHHH
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ--IG---CFVPCDSATISVVDQI---FTRVGAADSQYRGISTFMMEMKET 622 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~~~laq--~g---~~vpa~~~~~~~~d~i---~~~~~~~d~~~~~~s~f~~e~~~~ 622 (813)
.+.+++++||||+||||.+.-+|....... .| ..+.++..+.+-.+++ -..+|..=.... . ...+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~---~----~~~l 245 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE---S----FKDL 245 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC---c----HHHH
Confidence 357999999999999999988875433221 12 2344554444444432 222443211111 1 1223
Q ss_pred HHHHHhCCCCcEEEEeCCCCCC
Q psy5289 623 ATVIKKCTENSLVIIDELGRGT 644 (813)
Q Consensus 623 ~~il~~~~~~~LlllDEp~~Gt 644 (813)
...+....+.++||+|++|+..
T Consensus 246 ~~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 246 KEEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred HHHHHHhCCCCEEEEcCCCCCc
Confidence 3444455688999999998875
No 497
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.08 E-value=0.0015 Score=67.22 Aligned_cols=34 Identities=9% Similarity=-0.108 Sum_probs=25.6
Q ss_pred hCCCCcEEEEeCCC-----CCCChhhHHHHHHHHHHHHHh
Q psy5289 628 KCTENSLVIIDELG-----RGTSTFDGFGMACSIARELAS 662 (813)
Q Consensus 628 ~~~~~~LlllDEp~-----~Gtd~~d~~~i~~~i~~~l~~ 662 (813)
.+.+|+++++|||+ .|+|+.....+.. ++..+++
T Consensus 167 l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~-~~~~~~~ 205 (215)
T PTZ00132 167 LTNDPNLVFVGAPALAPEEIQIDPELVAQAEK-ELQAAAN 205 (215)
T ss_pred HhhcccceecCCcccCCCccccCHHHHHHHHH-HHHHHhh
Confidence 35799999999999 9999987666643 4444543
No 498
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.07 E-value=0.0031 Score=63.61 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=23.7
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSVF 577 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~~ 577 (813)
..|++++|+||.|+||||++-+++....
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999876544
No 499
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.07 E-value=0.005 Score=63.91 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=61.8
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhh-hccccccCCccchhHHHHHHHhcCCc--hhHhh-------ccchh---
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFTRVGAA--DSQYR-------GISTF--- 615 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~la-q~g~~vpa~~~~~~~~d~i~~~~~~~--d~~~~-------~~s~f--- 615 (813)
...|++++|.|+.|+|||++.-+++...... .-+.|+-.+...-.+ -+-+..+|.. +.+.. ....+
T Consensus 13 i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 13 FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERI-LGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHH-HHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 3468999999999999999988875433221 123344333221111 1112223321 00000 00111
Q ss_pred HHHHHH-HHHHHHhCCCCcEEEEeCCCCCC-----ChhhHHHHHHHHHHHHHhcCCCEEEEEcCCh
Q psy5289 616 MMEMKE-TATVIKKCTENSLVIIDELGRGT-----STFDGFGMACSIARELASHRQPFTLFATHFH 675 (813)
Q Consensus 616 ~~e~~~-~~~il~~~~~~~LlllDEp~~Gt-----d~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~ 675 (813)
..++.. +..++. -.+++++++|=+ ... +..........++..+.+ .|+++++++|..
T Consensus 92 ~~~l~~~~~~~i~-~~~~~~vVIDsl-s~l~~~~~~~~~~r~~l~~l~~~lk~-~~~tvll~s~~~ 154 (224)
T TIGR03880 92 LNRIKNELPILIK-ELGASRVVIDPI-SLLETLFDDDAERRTELFRFYSSLRE-TGVTTILTSEAD 154 (224)
T ss_pred HHHHHHHHHHHHH-HhCCCEEEEcCh-HHHhhhcCCHHHHHHHHHHHHHHHHh-CCCEEEEEEccc
Confidence 112111 111122 236789999943 222 222223334567777776 699999999963
No 500
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.06 E-value=0.003 Score=69.02 Aligned_cols=27 Identities=30% Similarity=0.215 Sum_probs=23.6
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
.++++++++||||+||||++..+|...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999999987654
Done!