Query psy5289
Match_columns 813
No_of_seqs 616 out of 3301
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 22:46:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3thx_A DNA mismatch repair pro 100.0 3E-128 1E-132 1169.1 71.5 780 2-787 18-898 (934)
2 3thx_B DNA mismatch repair pro 100.0 1E-120 4E-125 1100.0 62.8 752 3-793 17-908 (918)
3 1wb9_A DNA mismatch repair pro 100.0 1E-118 5E-123 1074.3 63.6 703 4-744 15-799 (800)
4 1ewq_A DNA mismatch repair pro 100.0 1E-112 5E-117 1016.6 54.0 675 3-743 17-764 (765)
5 2o8b_B DNA mismatch repair pro 100.0 1E-111 4E-116 1037.0 59.1 727 3-746 72-990 (1022)
6 3tif_A Uncharacterized ABC tra 99.8 5.8E-21 2E-25 198.2 13.8 160 539-700 18-231 (235)
7 2pcj_A ABC transporter, lipopr 99.8 1.9E-20 6.6E-25 192.9 15.0 155 539-696 17-221 (224)
8 4g1u_C Hemin import ATP-bindin 99.8 1.9E-20 6.7E-25 197.6 14.3 171 521-697 11-231 (266)
9 1vpl_A ABC transporter, ATP-bi 99.8 9.4E-20 3.2E-24 191.2 16.4 153 539-694 28-226 (256)
10 3fvq_A Fe(3+) IONS import ATP- 99.8 1.2E-19 4E-24 198.2 16.5 158 538-697 16-222 (359)
11 3gfo_A Cobalt import ATP-bindi 99.8 4.8E-20 1.6E-24 195.2 12.7 170 521-696 7-226 (275)
12 2olj_A Amino acid ABC transpor 99.8 1.2E-19 4.2E-24 190.9 15.1 166 521-694 24-239 (263)
13 3tui_C Methionine import ATP-b 99.8 7.7E-20 2.6E-24 199.7 13.9 174 520-696 23-246 (366)
14 1b0u_A Histidine permease; ABC 99.8 1.7E-19 5.7E-24 190.2 14.4 153 539-694 19-233 (262)
15 1ji0_A ABC transporter; ATP bi 99.8 1.1E-19 3.9E-24 189.1 12.7 155 539-695 19-220 (240)
16 1g6h_A High-affinity branched- 99.8 1.9E-19 6.6E-24 189.3 14.2 153 539-694 20-233 (257)
17 2nq2_C Hypothetical ABC transp 99.8 1.8E-19 6.3E-24 188.8 13.8 151 539-691 18-206 (253)
18 3rlf_A Maltose/maltodextrin im 99.8 3.1E-19 1.1E-23 196.1 14.1 158 538-697 15-217 (381)
19 2yyz_A Sugar ABC transporter, 99.8 6.2E-19 2.1E-23 193.0 16.0 157 539-697 16-217 (359)
20 2qi9_C Vitamin B12 import ATP- 99.8 2.8E-19 9.5E-24 186.9 12.3 152 540-694 14-213 (249)
21 1z47_A CYSA, putative ABC-tran 99.8 4.8E-19 1.6E-23 193.4 13.3 173 519-697 12-229 (355)
22 2yz2_A Putative ABC transporte 99.8 1.1E-18 3.8E-23 184.4 15.4 155 539-696 20-220 (266)
23 2ff7_A Alpha-hemolysin translo 99.8 7.4E-19 2.5E-23 183.6 13.9 152 539-694 22-223 (247)
24 2onk_A Molybdate/tungstate ABC 99.8 5.6E-19 1.9E-23 183.6 12.8 153 541-696 14-209 (240)
25 2d2e_A SUFC protein; ABC-ATPas 99.8 6.4E-19 2.2E-23 184.6 12.0 153 539-693 16-223 (250)
26 2ihy_A ABC transporter, ATP-bi 99.8 7.5E-19 2.6E-23 186.7 12.7 167 520-694 20-243 (279)
27 2it1_A 362AA long hypothetical 99.8 9.8E-19 3.4E-23 191.6 13.4 157 539-697 16-217 (362)
28 2pjz_A Hypothetical protein ST 99.8 1.1E-18 3.7E-23 183.7 13.2 152 539-697 18-209 (263)
29 1v43_A Sugar-binding transport 99.8 9.1E-19 3.1E-23 192.6 12.9 157 539-697 24-225 (372)
30 3d31_A Sulfate/molybdate ABC t 99.8 9.7E-19 3.3E-23 190.8 13.0 155 541-697 15-211 (348)
31 2zu0_C Probable ATP-dependent 99.8 5.2E-19 1.8E-23 187.0 10.2 168 521-695 20-246 (267)
32 2ixe_A Antigen peptide transpo 99.8 9.5E-19 3.2E-23 185.3 11.7 169 520-693 15-235 (271)
33 2pze_A Cystic fibrosis transme 99.8 5.1E-19 1.8E-23 182.8 9.4 154 539-695 21-210 (229)
34 1g29_1 MALK, maltose transport 99.8 2.4E-18 8.1E-23 189.6 14.5 157 539-697 16-223 (372)
35 1oxx_K GLCV, glucose, ABC tran 99.8 2E-18 6.7E-23 189.1 12.7 155 541-697 20-224 (353)
36 1mv5_A LMRA, multidrug resista 99.8 1.6E-18 5.4E-23 180.8 10.6 150 539-691 15-214 (243)
37 2cbz_A Multidrug resistance-as 99.7 1.3E-18 4.5E-23 180.6 9.3 152 539-693 18-207 (237)
38 1sgw_A Putative ABC transporte 99.7 2E-18 6.7E-23 176.1 10.2 141 540-683 23-202 (214)
39 2ghi_A Transport protein; mult 99.7 5.4E-18 1.8E-22 178.5 12.5 151 540-693 34-232 (260)
40 2bbs_A Cystic fibrosis transme 99.7 2.4E-18 8.3E-23 183.6 9.7 152 539-693 51-237 (290)
41 3nh6_A ATP-binding cassette SU 99.7 9.6E-18 3.3E-22 179.9 12.7 170 520-696 52-270 (306)
42 3gd7_A Fusion complex of cysti 99.7 9.8E-18 3.3E-22 185.5 9.3 170 520-696 18-235 (390)
43 1yqt_A RNAse L inhibitor; ATP- 99.7 3.2E-16 1.1E-20 181.4 14.3 147 540-689 36-233 (538)
44 4a82_A Cystic fibrosis transme 99.7 8.1E-16 2.8E-20 180.2 17.1 172 520-697 338-558 (578)
45 3b5x_A Lipid A export ATP-bind 99.7 9.6E-16 3.3E-20 179.8 17.4 170 520-695 340-559 (582)
46 2yl4_A ATP-binding cassette SU 99.6 2.1E-15 7.3E-20 177.3 19.8 174 522-701 342-568 (595)
47 3b60_A Lipid A export ATP-bind 99.6 2E-15 6.8E-20 177.2 19.1 169 520-695 340-559 (582)
48 3qf4_A ABC transporter, ATP-bi 99.6 2.5E-15 8.5E-20 176.2 19.6 170 520-696 340-559 (587)
49 3j16_B RLI1P; ribosome recycli 99.6 2.9E-16 9.8E-21 183.5 10.5 145 540-685 361-539 (608)
50 3bk7_A ABC transporter ATP-bin 99.6 8E-16 2.7E-20 180.0 14.2 145 540-687 106-301 (607)
51 3ozx_A RNAse L inhibitor; ATP 99.6 4.6E-16 1.6E-20 179.8 11.8 146 541-687 283-459 (538)
52 3qf4_B Uncharacterized ABC tra 99.6 1.9E-15 6.5E-20 177.7 17.1 166 520-693 353-568 (598)
53 3bk7_A ABC transporter ATP-bin 99.6 6.2E-16 2.1E-20 181.0 11.8 146 541-687 371-545 (607)
54 1yqt_A RNAse L inhibitor; ATP- 99.6 4.8E-16 1.6E-20 180.0 10.7 146 541-687 301-475 (538)
55 3ux8_A Excinuclease ABC, A sub 99.6 8E-16 2.7E-20 183.5 12.0 96 599-696 186-291 (670)
56 3ux8_A Excinuclease ABC, A sub 99.6 1.6E-15 5.3E-20 181.1 12.8 89 608-698 537-635 (670)
57 2iw3_A Elongation factor 3A; a 99.6 2.4E-15 8.2E-20 182.0 13.2 150 538-693 447-624 (986)
58 3j16_B RLI1P; ribosome recycli 99.6 4.1E-15 1.4E-19 173.7 13.3 146 539-687 91-294 (608)
59 3ozx_A RNAse L inhibitor; ATP 99.6 1.4E-14 4.6E-19 167.5 14.6 136 550-688 23-211 (538)
60 4gp7_A Metallophosphoesterase; 99.5 1.7E-15 6E-20 149.1 3.6 135 544-681 1-165 (171)
61 2iw3_A Elongation factor 3A; a 99.5 6.1E-15 2.1E-19 178.5 7.9 93 596-693 881-977 (986)
62 3pih_A Uvrabc system protein A 99.5 4.2E-14 1.4E-18 171.1 15.0 101 598-700 788-899 (916)
63 2vf7_A UVRA2, excinuclease ABC 99.5 3.1E-14 1E-18 170.9 13.6 97 598-696 713-820 (842)
64 2ygr_A Uvrabc system protein A 99.5 4.6E-14 1.6E-18 170.2 14.7 88 598-687 846-938 (993)
65 2r6f_A Excinuclease ABC subuni 99.5 2.8E-14 9.5E-19 171.4 11.7 88 598-687 828-920 (972)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.5 1.1E-13 3.9E-18 152.7 12.1 81 611-693 276-363 (365)
67 3g5u_A MCG1178, multidrug resi 99.5 8.7E-14 3E-18 176.4 12.0 173 520-697 1029-1252(1284)
68 4aby_A DNA repair protein RECN 99.4 2.1E-13 7E-18 153.4 9.2 113 615-738 296-413 (415)
69 3g5u_A MCG1178, multidrug resi 99.4 8.5E-13 2.9E-17 167.4 15.9 172 520-697 386-607 (1284)
70 4f4c_A Multidrug resistance pr 99.4 2.8E-12 9.4E-17 163.1 18.9 175 520-700 414-638 (1321)
71 4f4c_A Multidrug resistance pr 99.4 3E-12 1E-16 162.9 14.8 173 520-698 1075-1299(1321)
72 1ye8_A Protein THEP1, hypothet 99.3 9.6E-13 3.3E-17 130.3 4.5 125 554-683 2-152 (178)
73 2ehv_A Hypothetical protein PH 99.3 5.2E-12 1.8E-16 131.2 9.2 129 548-678 26-185 (251)
74 3b85_A Phosphate starvation-in 99.3 5.5E-13 1.9E-17 135.3 1.5 126 540-679 14-162 (208)
75 2npi_A Protein CLP1; CLP1-PCF1 99.3 3.5E-13 1.2E-17 152.6 -0.8 127 542-676 128-299 (460)
76 1e69_A Chromosome segregation 99.3 1.1E-11 3.6E-16 134.7 10.9 70 612-684 217-291 (322)
77 3qkt_A DNA double-strand break 99.2 5.9E-11 2E-15 129.7 11.9 72 612-685 246-324 (339)
78 1cr0_A DNA primase/helicase; R 99.2 4.1E-11 1.4E-15 128.3 9.4 133 541-675 24-197 (296)
79 1znw_A Guanylate kinase, GMP k 99.1 1.9E-12 6.4E-17 131.3 -2.2 37 538-576 8-44 (207)
80 2w0m_A SSO2452; RECA, SSPF, un 99.1 1.7E-10 5.8E-15 118.1 11.4 145 542-688 12-190 (235)
81 4a74_A DNA repair and recombin 99.1 1.3E-10 4.5E-15 118.9 6.9 127 549-676 22-181 (231)
82 3ec2_A DNA replication protein 99.0 1.8E-10 6.1E-15 113.8 6.4 108 549-675 35-143 (180)
83 1nlf_A Regulatory protein REPA 99.0 4.4E-10 1.5E-14 119.2 9.6 126 550-678 28-184 (279)
84 1tq4_A IIGP1, interferon-induc 99.0 2.5E-11 8.5E-16 135.1 -2.5 142 539-682 36-245 (413)
85 1tf7_A KAIC; homohexamer, hexa 99.0 9.4E-10 3.2E-14 127.3 9.5 137 548-691 277-444 (525)
86 2pt7_A CAG-ALFA; ATPase, prote 99.0 4.7E-11 1.6E-15 129.8 -1.6 126 541-687 160-287 (330)
87 2cvh_A DNA repair and recombin 98.9 3.5E-09 1.2E-13 107.5 11.7 126 548-676 16-157 (220)
88 1tf7_A KAIC; homohexamer, hexa 98.9 1.5E-09 5.1E-14 125.7 9.2 147 539-689 25-209 (525)
89 2eyu_A Twitching motility prot 98.9 4.4E-10 1.5E-14 118.0 3.2 117 541-683 16-141 (261)
90 2obl_A ESCN; ATPase, hydrolase 98.9 2.9E-10 9.9E-15 124.2 1.4 146 539-696 59-248 (347)
91 3b9q_A Chloroplast SRP recepto 98.8 6.8E-09 2.3E-13 111.2 8.1 32 544-575 92-123 (302)
92 2jeo_A Uridine-cytidine kinase 98.8 1.2E-09 4E-14 113.7 2.0 38 538-575 11-48 (245)
93 1n0w_A DNA repair protein RAD5 98.8 1.3E-08 4.4E-13 105.0 9.5 127 549-676 21-175 (243)
94 1pzn_A RAD51, DNA repair and r 98.8 1.2E-08 3.9E-13 111.8 9.1 130 546-676 125-287 (349)
95 2og2_A Putative signal recogni 98.8 1.4E-08 4.8E-13 111.0 9.4 32 544-575 149-180 (359)
96 3jvv_A Twitching mobility prot 98.7 5.2E-09 1.8E-13 114.6 5.1 119 549-685 120-241 (356)
97 2kjq_A DNAA-related protein; s 98.7 1.4E-08 4.9E-13 97.1 7.5 86 551-674 35-124 (149)
98 3aez_A Pantothenate kinase; tr 98.7 1.6E-09 5.4E-14 116.7 -1.6 118 549-678 87-231 (312)
99 2v9p_A Replication protein E1; 98.7 7.6E-10 2.6E-14 118.2 -4.5 127 540-693 114-256 (305)
100 2i3b_A HCR-ntpase, human cance 98.6 1.4E-09 4.7E-14 108.5 -3.4 26 552-577 1-26 (189)
101 1z6g_A Guanylate kinase; struc 98.6 1.3E-09 4.5E-14 111.3 -3.8 136 542-678 13-197 (218)
102 2dpy_A FLII, flagellum-specifi 98.6 1.3E-08 4.5E-13 114.5 4.0 146 539-696 145-337 (438)
103 1f2t_B RAD50 ABC-ATPase; DNA d 98.6 6.3E-08 2.2E-12 92.4 8.0 77 609-687 52-135 (148)
104 3asz_A Uridine kinase; cytidin 98.5 2.9E-10 9.8E-15 115.2 -11.6 26 550-575 4-29 (211)
105 3sop_A Neuronal-specific septi 98.5 3.7E-08 1.3E-12 103.8 3.6 38 632-676 114-151 (270)
106 1s96_A Guanylate kinase, GMP k 98.4 1.2E-07 4E-12 96.8 4.3 27 550-576 14-40 (219)
107 3lda_A DNA repair protein RAD5 98.4 4.8E-07 1.6E-11 100.4 9.4 126 549-675 175-328 (400)
108 2ewv_A Twitching motility prot 98.4 2.9E-07 1E-11 101.5 7.5 117 549-683 133-252 (372)
109 3szr_A Interferon-induced GTP- 98.3 1.1E-07 3.7E-12 111.7 2.6 49 630-678 145-199 (608)
110 2dr3_A UPF0273 protein PH0284; 98.3 1.4E-06 4.7E-11 89.7 10.6 125 548-676 19-174 (247)
111 2r6f_A Excinuclease ABC subuni 98.3 5.6E-07 1.9E-11 108.5 8.4 97 599-697 488-594 (972)
112 1lw7_A Transcriptional regulat 98.3 3.9E-07 1.3E-11 100.4 6.3 139 542-681 158-335 (365)
113 3pih_A Uvrabc system protein A 98.3 8.8E-07 3E-11 107.4 9.6 99 597-697 446-554 (916)
114 2vf7_A UVRA2, excinuclease ABC 98.3 1.2E-06 4.2E-11 105.3 8.8 97 598-696 362-468 (842)
115 2ygr_A Uvrabc system protein A 98.2 1.3E-06 4.4E-11 105.8 8.4 96 599-696 505-610 (993)
116 1sxj_E Activator 1 40 kDa subu 98.2 2.2E-06 7.7E-11 93.4 8.3 43 629-676 132-175 (354)
117 2qnr_A Septin-2, protein NEDD5 98.2 8.8E-07 3E-11 94.8 4.8 37 634-675 130-167 (301)
118 2px0_A Flagellar biosynthesis 98.2 7.5E-06 2.6E-10 87.3 12.0 127 550-687 103-239 (296)
119 1htw_A HI0065; nucleotide-bind 98.2 5.1E-07 1.8E-11 87.1 2.1 38 539-576 20-57 (158)
120 2zr9_A Protein RECA, recombina 98.1 7.9E-06 2.7E-10 89.1 10.4 122 549-675 58-198 (349)
121 2qag_C Septin-7; cell cycle, c 98.1 4.5E-07 1.5E-11 101.2 0.4 32 539-576 24-55 (418)
122 2qag_B Septin-6, protein NEDD5 98.0 6.4E-07 2.2E-11 99.6 0.4 34 542-575 30-65 (427)
123 1rj9_A FTSY, signal recognitio 98.0 7.2E-06 2.5E-10 87.7 8.2 26 550-575 100-125 (304)
124 3kta_B Chromosome segregation 98.0 1.4E-05 4.9E-10 78.0 8.3 71 612-685 62-137 (173)
125 3e70_C DPA, signal recognition 97.9 1.4E-05 4.8E-10 86.3 8.4 27 549-575 126-152 (328)
126 2gza_A Type IV secretion syste 97.9 2E-06 6.9E-11 94.4 0.9 33 543-575 166-198 (361)
127 4ad8_A DNA repair protein RECN 97.9 3.1E-05 1.1E-09 89.2 10.9 112 616-738 399-515 (517)
128 3hr8_A Protein RECA; alpha and 97.8 8.5E-05 2.9E-09 80.9 12.3 123 549-674 58-197 (356)
129 2r6a_A DNAB helicase, replicat 97.8 5.2E-05 1.8E-09 85.8 10.3 132 542-673 193-362 (454)
130 1vma_A Cell division protein F 97.8 7.2E-05 2.5E-09 79.9 10.0 32 545-576 97-128 (306)
131 1ls1_A Signal recognition part 97.7 5.8E-05 2E-09 80.3 9.1 32 543-576 91-122 (295)
132 1fnn_A CDC6P, cell division co 97.7 8.4E-05 2.9E-09 81.6 10.7 119 554-679 46-173 (389)
133 2bbw_A Adenylate kinase 4, AK4 97.7 1.5E-05 5.3E-10 82.3 4.3 22 552-573 27-48 (246)
134 2yhs_A FTSY, cell division pro 97.7 0.0001 3.5E-09 83.1 11.2 35 542-576 283-317 (503)
135 3lnc_A Guanylate kinase, GMP k 97.7 7.8E-06 2.7E-10 83.7 1.7 36 540-575 15-51 (231)
136 1pui_A ENGB, probable GTP-bind 97.7 2.7E-05 9.3E-10 77.8 5.5 33 541-575 17-49 (210)
137 3tr0_A Guanylate kinase, GMP k 97.7 1.4E-05 4.8E-10 79.8 3.2 28 548-575 3-30 (205)
138 2qby_A CDC6 homolog 1, cell di 97.6 3.2E-05 1.1E-09 84.7 4.3 126 550-678 43-176 (386)
139 1v5w_A DMC1, meiotic recombina 97.6 0.0002 6.8E-09 77.9 10.4 127 549-675 119-274 (343)
140 1udx_A The GTP-binding protein 97.6 4.2E-05 1.4E-09 85.2 4.8 124 543-674 148-308 (416)
141 3kta_A Chromosome segregation 97.5 4.1E-05 1.4E-09 75.0 3.4 32 543-575 18-49 (182)
142 3euj_A Chromosome partition pr 97.5 3.9E-05 1.3E-09 86.7 2.8 35 541-576 19-53 (483)
143 2z4s_A Chromosomal replication 97.4 0.00018 6.1E-09 81.0 8.1 103 552-674 130-236 (440)
144 2xau_A PRE-mRNA-splicing facto 97.4 0.00012 4.2E-09 88.1 7.1 132 551-684 108-262 (773)
145 1w1w_A Structural maintenance 97.4 0.00017 5.9E-09 80.9 7.5 73 612-686 331-408 (430)
146 3c8u_A Fructokinase; YP_612366 97.4 6.6E-05 2.2E-09 75.5 3.3 27 550-576 20-46 (208)
147 1zp6_A Hypothetical protein AT 97.4 6.6E-05 2.3E-09 73.9 3.2 27 549-575 6-32 (191)
148 3auy_A DNA double-strand break 97.4 0.00021 7E-09 78.7 7.5 54 629-685 302-356 (371)
149 2ce7_A Cell division protein F 97.4 0.00045 1.5E-08 78.2 10.1 30 544-575 43-72 (476)
150 3a00_A Guanylate kinase, GMP k 97.4 6.2E-05 2.1E-09 74.2 2.6 25 552-576 1-25 (186)
151 1odf_A YGR205W, hypothetical 3 97.3 5.1E-05 1.7E-09 80.6 1.6 25 550-574 29-53 (290)
152 1sq5_A Pantothenate kinase; P- 97.3 5.7E-05 1.9E-09 80.9 1.4 26 550-575 78-103 (308)
153 2ius_A DNA translocase FTSK; n 97.3 0.00015 5E-09 82.6 4.6 28 547-574 162-189 (512)
154 1lvg_A Guanylate kinase, GMP k 97.3 9E-05 3.1E-09 74.0 2.5 26 551-576 3-28 (198)
155 1zu4_A FTSY; GTPase, signal re 97.3 0.00092 3.1E-08 71.8 10.5 34 543-576 96-129 (320)
156 2w58_A DNAI, primosome compone 97.2 0.00024 8.2E-09 70.6 5.5 24 553-576 55-78 (202)
157 2qm8_A GTPase/ATPase; G protei 97.2 9.7E-05 3.3E-09 80.2 2.7 37 540-576 43-79 (337)
158 3vaa_A Shikimate kinase, SK; s 97.2 0.00011 3.8E-09 73.2 2.9 37 538-574 11-47 (199)
159 2j41_A Guanylate kinase; GMP, 97.2 0.00014 4.8E-09 72.4 3.0 29 548-576 2-30 (207)
160 2z43_A DNA repair and recombin 97.2 0.00095 3.3E-08 71.9 9.7 127 549-675 104-258 (324)
161 1l8q_A Chromosomal replication 97.2 0.00041 1.4E-08 74.6 6.7 25 552-576 37-61 (324)
162 1u94_A RECA protein, recombina 97.2 0.0014 4.9E-08 71.3 11.0 122 549-675 60-200 (356)
163 3bos_A Putative DNA replicatio 97.2 0.00027 9.1E-09 71.8 4.8 26 551-576 51-76 (242)
164 4eun_A Thermoresistant glucoki 97.2 0.00015 5.2E-09 72.2 2.9 29 547-575 24-52 (200)
165 3kl4_A SRP54, signal recogniti 97.1 0.00071 2.4E-08 75.5 8.3 25 551-575 96-120 (433)
166 2bdt_A BH3686; alpha-beta prot 97.1 0.00017 5.9E-09 71.0 2.8 23 552-574 2-24 (189)
167 1kgd_A CASK, peripheral plasma 97.1 0.00018 6.3E-09 70.4 2.9 25 551-575 4-28 (180)
168 2v1u_A Cell division control p 97.1 0.00052 1.8E-08 75.0 6.8 125 550-677 42-179 (387)
169 2o5v_A DNA replication and rep 97.0 0.00028 9.4E-09 77.1 3.3 74 614-695 265-348 (359)
170 3llm_A ATP-dependent RNA helic 97.0 0.0014 4.8E-08 67.0 8.4 24 552-575 76-99 (235)
171 3uie_A Adenylyl-sulfate kinase 97.0 0.00024 8.1E-09 70.8 2.2 35 542-576 15-49 (200)
172 2o5v_A DNA replication and rep 96.9 0.00052 1.8E-08 74.9 4.9 17 620-638 311-327 (359)
173 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00039 1.3E-08 66.0 3.3 22 553-574 24-45 (149)
174 2i1q_A DNA repair and recombin 96.9 0.0024 8.3E-08 68.5 9.8 30 549-578 95-124 (322)
175 2vp4_A Deoxynucleoside kinase; 96.9 0.00048 1.6E-08 70.3 3.8 28 548-575 16-43 (230)
176 4a1f_A DNAB helicase, replicat 96.9 0.0021 7E-08 69.4 8.8 118 548-673 42-164 (338)
177 3tau_A Guanylate kinase, GMP k 96.9 0.00041 1.4E-08 69.7 3.0 26 550-575 6-31 (208)
178 1jbk_A CLPB protein; beta barr 96.9 0.0026 8.8E-08 61.5 8.7 24 552-575 43-66 (195)
179 3b9p_A CG5977-PA, isoform A; A 96.9 0.0023 7.9E-08 67.5 9.0 24 552-575 54-77 (297)
180 2p65_A Hypothetical protein PF 96.8 0.0021 7.2E-08 62.1 7.9 24 552-575 43-66 (187)
181 1kag_A SKI, shikimate kinase I 96.8 0.00042 1.5E-08 66.9 2.5 24 552-575 4-27 (173)
182 2b8t_A Thymidine kinase; deoxy 96.8 0.00061 2.1E-08 69.2 3.6 144 550-710 10-169 (223)
183 1knq_A Gluconate kinase; ALFA/ 96.8 0.00056 1.9E-08 66.2 3.1 26 550-575 6-31 (175)
184 2oap_1 GSPE-2, type II secreti 96.8 0.00025 8.7E-09 81.1 0.6 36 541-576 249-284 (511)
185 2x8a_A Nuclear valosin-contain 96.8 0.00041 1.4E-08 72.9 2.1 33 541-575 35-67 (274)
186 3nwj_A ATSK2; P loop, shikimat 96.7 0.00023 7.9E-09 73.7 -0.0 36 539-574 32-70 (250)
187 1svm_A Large T antigen; AAA+ f 96.7 0.0004 1.4E-08 76.2 1.9 35 540-574 157-191 (377)
188 1xp8_A RECA protein, recombina 96.7 0.0073 2.5E-07 65.9 11.9 122 550-675 72-211 (366)
189 1in4_A RUVB, holliday junction 96.7 0.0004 1.4E-08 75.2 1.7 24 553-576 52-75 (334)
190 2q6t_A DNAB replication FORK h 96.7 0.0046 1.6E-07 69.5 10.3 31 548-578 196-226 (444)
191 1ypw_A Transitional endoplasmi 96.7 0.003 1E-07 76.3 9.2 27 549-575 235-261 (806)
192 1p9r_A General secretion pathw 96.7 0.00071 2.4E-08 75.3 3.3 34 541-576 158-191 (418)
193 3cf0_A Transitional endoplasmi 96.6 0.0032 1.1E-07 66.9 7.9 27 549-575 46-72 (301)
194 1njg_A DNA polymerase III subu 96.6 0.0056 1.9E-07 61.4 9.5 23 553-575 46-68 (250)
195 4e22_A Cytidylate kinase; P-lo 96.6 0.00083 2.8E-08 69.6 3.0 24 550-573 25-48 (252)
196 3ney_A 55 kDa erythrocyte memb 96.6 0.00095 3.2E-08 66.4 3.1 25 550-574 17-41 (197)
197 3h4m_A Proteasome-activating n 96.6 0.0016 5.4E-08 68.3 5.0 25 551-575 50-74 (285)
198 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.01 3.6E-07 63.1 11.1 26 550-575 121-146 (331)
199 2dhr_A FTSH; AAA+ protein, hex 96.5 0.0059 2E-07 69.4 9.7 33 542-576 56-88 (499)
200 2e87_A Hypothetical protein PH 96.5 0.001 3.5E-08 72.6 3.3 23 553-575 168-190 (357)
201 1rz3_A Hypothetical protein rb 96.5 0.0012 3.9E-08 65.9 3.2 27 549-575 19-45 (201)
202 1lv7_A FTSH; alpha/beta domain 96.5 0.0092 3.1E-07 61.5 10.1 22 554-575 47-68 (257)
203 1w1w_A Structural maintenance 96.5 0.0011 3.8E-08 74.3 3.2 28 549-576 23-50 (430)
204 3qks_A DNA double-strand break 96.5 0.0013 4.5E-08 65.7 3.4 23 553-575 24-46 (203)
205 3t15_A Ribulose bisphosphate c 96.5 0.0031 1.1E-07 66.8 6.5 24 552-575 36-59 (293)
206 1ixz_A ATP-dependent metallopr 96.4 0.00089 3E-08 69.2 2.1 33 541-575 40-72 (254)
207 3bh0_A DNAB-like replicative h 96.4 0.0058 2E-07 65.4 8.5 122 547-674 63-190 (315)
208 1qhl_A Protein (cell division 96.4 0.00018 6E-09 73.4 -3.7 30 544-576 22-51 (227)
209 3k1j_A LON protease, ATP-depen 96.4 0.00057 1.9E-08 80.1 0.1 38 539-576 47-84 (604)
210 1nij_A Hypothetical protein YJ 96.3 0.0013 4.4E-08 70.7 2.7 23 553-575 5-27 (318)
211 1iy2_A ATP-dependent metallopr 96.3 0.0011 3.9E-08 69.4 2.1 34 541-576 64-97 (278)
212 3dm5_A SRP54, signal recogniti 96.3 0.0068 2.3E-07 67.6 8.5 24 551-574 99-122 (443)
213 3io5_A Recombination and repai 96.3 0.015 5.2E-07 61.7 10.5 124 549-676 26-173 (333)
214 2qgz_A Helicase loader, putati 96.3 0.0011 3.8E-08 70.8 1.9 26 552-577 152-177 (308)
215 1u0l_A Probable GTPase ENGC; p 96.3 0.0011 3.9E-08 70.5 1.7 25 550-574 167-191 (301)
216 2yv5_A YJEQ protein; hydrolase 96.3 0.0015 5E-08 69.7 2.5 24 550-573 163-186 (302)
217 2qt1_A Nicotinamide riboside k 96.2 0.0021 7.2E-08 64.0 3.3 26 549-574 18-43 (207)
218 1jjv_A Dephospho-COA kinase; P 96.2 0.0019 6.5E-08 64.3 2.6 22 553-574 3-24 (206)
219 2rcn_A Probable GTPase ENGC; Y 96.2 0.0019 6.4E-08 70.2 2.8 30 544-574 208-237 (358)
220 1t9h_A YLOQ, probable GTPase E 96.1 0.00091 3.1E-08 71.3 0.1 28 547-574 168-195 (307)
221 2dy1_A Elongation factor G; tr 96.1 0.0075 2.6E-07 71.3 7.8 119 548-678 5-139 (665)
222 3tqc_A Pantothenate kinase; bi 96.1 0.0022 7.4E-08 68.8 2.8 23 553-575 93-115 (321)
223 2if2_A Dephospho-COA kinase; a 96.1 0.0022 7.6E-08 63.6 2.6 21 554-574 3-23 (204)
224 2pez_A Bifunctional 3'-phospho 96.0 0.0027 9.4E-08 61.6 3.1 26 550-575 3-28 (179)
225 1j8m_F SRP54, signal recogniti 96.0 0.034 1.2E-06 58.9 11.8 31 545-576 92-122 (297)
226 1cke_A CK, MSSA, protein (cyti 96.0 0.0025 8.7E-08 64.2 2.7 23 552-574 5-27 (227)
227 4ad8_A DNA repair protein RECN 95.9 0.0014 4.9E-08 75.2 0.5 32 543-575 52-83 (517)
228 2orv_A Thymidine kinase; TP4A 95.9 0.013 4.3E-07 59.4 7.3 139 551-710 18-169 (234)
229 3auy_A DNA double-strand break 95.9 0.0033 1.1E-07 69.0 3.2 23 553-575 26-48 (371)
230 1y63_A LMAJ004144AAA protein; 95.9 0.0038 1.3E-07 61.1 3.1 31 544-574 2-32 (184)
231 3m6a_A ATP-dependent protease 95.8 0.0047 1.6E-07 71.3 4.1 35 541-576 98-132 (543)
232 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.038 1.3E-06 56.7 10.5 22 553-574 40-61 (262)
233 2qor_A Guanylate kinase; phosp 95.7 0.0038 1.3E-07 62.1 2.6 25 550-574 10-34 (204)
234 4b4t_K 26S protease regulatory 95.7 0.023 8E-07 63.1 9.2 24 552-575 206-229 (428)
235 2r8r_A Sensor protein; KDPD, P 95.7 0.0052 1.8E-07 62.1 3.5 46 631-677 84-129 (228)
236 2ffh_A Protein (FFH); SRP54, s 95.7 0.02 6.9E-07 63.6 8.6 31 544-576 92-122 (425)
237 4b4t_L 26S protease subunit RP 95.7 0.053 1.8E-06 60.4 11.9 24 552-575 215-238 (437)
238 3co5_A Putative two-component 95.7 0.033 1.1E-06 51.9 8.8 23 553-575 28-50 (143)
239 4eaq_A DTMP kinase, thymidylat 95.7 0.0051 1.7E-07 62.7 3.3 26 550-575 24-49 (229)
240 3cmw_A Protein RECA, recombina 95.7 0.039 1.3E-06 70.8 12.0 122 549-674 729-868 (1706)
241 2f1r_A Molybdopterin-guanine d 95.6 0.0026 8.9E-08 61.8 0.9 24 553-576 3-26 (171)
242 1oix_A RAS-related protein RAB 95.6 0.0048 1.6E-07 60.6 2.7 22 554-575 31-52 (191)
243 4b4t_J 26S protease regulatory 95.6 0.028 9.7E-07 61.7 9.0 24 552-575 182-205 (405)
244 4fcw_A Chaperone protein CLPB; 95.6 0.035 1.2E-06 58.6 9.5 24 553-576 48-71 (311)
245 3bgw_A DNAB-like replicative h 95.5 0.064 2.2E-06 60.1 12.0 31 548-578 193-223 (444)
246 3cr8_A Sulfate adenylyltranfer 95.5 0.0036 1.2E-07 72.1 1.8 27 550-576 367-393 (552)
247 3t61_A Gluconokinase; PSI-biol 95.5 0.0047 1.6E-07 61.2 2.4 23 552-574 18-40 (202)
248 3d8b_A Fidgetin-like protein 1 95.5 0.038 1.3E-06 60.0 9.8 23 552-574 117-139 (357)
249 1q57_A DNA primase/helicase; d 95.5 0.048 1.6E-06 62.2 11.0 30 549-578 239-268 (503)
250 3lxx_A GTPase IMAP family memb 95.5 0.0074 2.5E-07 61.5 3.8 22 553-574 30-51 (239)
251 2yvu_A Probable adenylyl-sulfa 95.5 0.0069 2.3E-07 59.1 3.3 27 549-575 10-36 (186)
252 1sxj_D Activator 1 41 kDa subu 95.5 0.018 6.1E-07 62.0 7.0 23 554-576 60-82 (353)
253 3pfi_A Holliday junction ATP-d 95.5 0.035 1.2E-06 59.5 9.2 22 553-574 56-77 (338)
254 3syl_A Protein CBBX; photosynt 95.5 0.051 1.8E-06 57.3 10.4 24 553-576 68-91 (309)
255 1w5s_A Origin recognition comp 95.4 0.032 1.1E-06 61.4 9.0 88 551-640 49-147 (412)
256 3cm0_A Adenylate kinase; ATP-b 95.4 0.0063 2.2E-07 59.2 2.9 23 551-573 3-25 (186)
257 2p67_A LAO/AO transport system 95.4 0.0054 1.9E-07 66.4 2.6 35 541-575 45-79 (341)
258 2f9l_A RAB11B, member RAS onco 95.4 0.0057 1.9E-07 60.3 2.5 22 554-575 7-28 (199)
259 3eie_A Vacuolar protein sortin 95.3 0.023 7.9E-07 60.8 7.1 24 552-575 51-74 (322)
260 4b4t_M 26S protease regulatory 95.2 0.057 2E-06 60.0 10.1 24 552-575 215-238 (434)
261 1d2n_A N-ethylmaleimide-sensit 95.2 0.025 8.7E-07 58.7 6.8 25 551-575 63-87 (272)
262 1xwi_A SKD1 protein; VPS4B, AA 95.2 0.06 2E-06 57.6 9.8 24 552-575 45-68 (322)
263 2zts_A Putative uncharacterize 95.1 0.068 2.3E-06 54.1 9.7 28 549-576 27-54 (251)
264 1m7g_A Adenylylsulfate kinase; 95.1 0.0093 3.2E-07 59.6 2.9 27 549-575 22-48 (211)
265 1ypw_A Transitional endoplasmi 95.0 0.0097 3.3E-07 72.0 3.4 31 546-576 505-535 (806)
266 2chg_A Replication factor C sm 95.0 0.064 2.2E-06 52.8 8.9 22 554-575 40-61 (226)
267 3kb2_A SPBC2 prophage-derived 95.0 0.0098 3.4E-07 56.8 2.6 21 554-574 3-23 (173)
268 3hu3_A Transitional endoplasmi 94.9 0.035 1.2E-06 63.0 7.5 22 553-574 239-260 (489)
269 3n70_A Transport activator; si 94.9 0.031 1.1E-06 52.2 5.9 24 552-575 24-47 (145)
270 2qp9_X Vacuolar protein sortin 94.9 0.066 2.3E-06 58.1 9.3 23 553-575 85-107 (355)
271 3cmu_A Protein RECA, recombina 94.9 0.077 2.6E-06 69.1 11.1 123 549-675 380-520 (2050)
272 3cmw_A Protein RECA, recombina 94.8 0.1 3.5E-06 67.1 12.0 122 549-675 380-520 (1706)
273 1q3t_A Cytidylate kinase; nucl 94.8 0.012 4.2E-07 59.8 3.0 25 550-574 14-38 (236)
274 1qhx_A CPT, protein (chloramph 94.8 0.012 4.2E-07 56.6 2.7 23 552-574 3-25 (178)
275 1xx6_A Thymidine kinase; NESG, 94.7 0.024 8.2E-07 55.9 4.7 142 550-710 6-161 (191)
276 1ni3_A YCHF GTPase, YCHF GTP-b 94.7 0.013 4.6E-07 64.4 3.0 25 550-574 18-42 (392)
277 2j9r_A Thymidine kinase; TK1, 94.7 0.038 1.3E-06 55.3 6.0 119 540-674 14-137 (214)
278 3pvs_A Replication-associated 94.6 0.065 2.2E-06 60.1 8.6 23 553-575 51-73 (447)
279 4b4t_I 26S protease regulatory 94.6 0.084 2.9E-06 58.3 9.2 24 552-575 216-239 (437)
280 2ze6_A Isopentenyl transferase 94.6 0.014 4.8E-07 60.3 2.8 22 553-574 2-23 (253)
281 1jr3_A DNA polymerase III subu 94.6 0.05 1.7E-06 58.9 7.4 23 553-575 39-61 (373)
282 2qby_B CDC6 homolog 3, cell di 94.6 0.054 1.8E-06 58.9 7.6 25 551-575 44-68 (384)
283 2rhm_A Putative kinase; P-loop 94.5 0.018 6.1E-07 56.2 3.3 24 551-574 4-27 (193)
284 2www_A Methylmalonic aciduria 94.5 0.016 5.5E-07 62.9 3.1 24 552-575 74-97 (349)
285 2p5t_B PEZT; postsegregational 94.5 0.014 4.7E-07 60.3 2.4 25 550-574 30-54 (253)
286 1vht_A Dephospho-COA kinase; s 94.5 0.018 6E-07 57.7 3.2 23 552-574 4-26 (218)
287 3uk6_A RUVB-like 2; hexameric 94.4 0.15 5.2E-06 55.0 10.7 24 552-575 70-93 (368)
288 1kht_A Adenylate kinase; phosp 94.4 0.017 5.9E-07 56.1 2.7 23 552-574 3-25 (192)
289 1via_A Shikimate kinase; struc 94.3 0.016 5.5E-07 55.9 2.4 21 554-574 6-26 (175)
290 1ly1_A Polynucleotide kinase; 94.3 0.019 6.6E-07 55.2 2.9 22 553-574 3-24 (181)
291 3cmu_A Protein RECA, recombina 94.3 0.12 4.2E-06 67.2 10.9 29 549-577 1424-1452(2050)
292 4b4t_H 26S protease regulatory 94.3 0.14 4.8E-06 57.1 10.0 25 551-575 242-266 (467)
293 1qvr_A CLPB protein; coiled co 94.2 0.054 1.8E-06 66.0 7.3 25 552-576 191-215 (854)
294 1np6_A Molybdopterin-guanine d 94.2 0.019 6.5E-07 55.8 2.6 22 553-574 7-28 (174)
295 1gvn_B Zeta; postsegregational 94.2 0.02 7E-07 60.3 3.1 23 551-573 32-54 (287)
296 1hqc_A RUVB; extended AAA-ATPa 94.2 0.12 3.9E-06 54.9 9.0 22 553-574 39-60 (324)
297 2zan_A Vacuolar protein sortin 94.2 0.03 1E-06 62.8 4.5 24 552-575 167-190 (444)
298 3vfd_A Spastin; ATPase, microt 94.1 0.057 1.9E-06 59.3 6.6 23 552-574 148-170 (389)
299 3lw7_A Adenylate kinase relate 94.1 0.02 6.8E-07 54.5 2.6 20 553-572 2-21 (179)
300 1sxj_C Activator 1 40 kDa subu 94.1 0.0088 3E-07 64.5 -0.0 34 543-576 35-70 (340)
301 1sxj_A Activator 1 95 kDa subu 94.1 0.047 1.6E-06 62.4 6.1 23 553-575 78-100 (516)
302 3iij_A Coilin-interacting nucl 94.0 0.025 8.5E-07 54.7 3.0 23 551-573 10-32 (180)
303 3r20_A Cytidylate kinase; stru 94.0 0.022 7.5E-07 58.0 2.7 23 552-574 9-31 (233)
304 1ex7_A Guanylate kinase; subst 94.0 0.021 7.2E-07 56.1 2.4 20 553-572 2-21 (186)
305 2gj8_A MNME, tRNA modification 93.9 0.025 8.7E-07 54.2 2.9 24 551-574 3-26 (172)
306 2ga8_A Hypothetical 39.9 kDa p 93.9 0.016 5.5E-07 62.5 1.5 35 541-575 11-47 (359)
307 2wji_A Ferrous iron transport 93.8 0.025 8.7E-07 53.7 2.7 22 553-574 4-25 (165)
308 2vli_A Antibiotic resistance p 93.8 0.022 7.4E-07 55.1 2.1 22 552-573 5-26 (183)
309 1a5t_A Delta prime, HOLB; zinc 93.8 0.13 4.3E-06 55.3 8.3 116 553-676 25-149 (334)
310 1uf9_A TT1252 protein; P-loop, 93.7 0.031 1.1E-06 54.9 3.2 23 552-574 8-30 (203)
311 2jaq_A Deoxyguanosine kinase; 93.7 0.027 9.1E-07 55.3 2.6 21 554-574 2-22 (205)
312 1tev_A UMP-CMP kinase; ploop, 93.7 0.029 1E-06 54.5 2.9 22 552-573 3-24 (196)
313 1ega_A Protein (GTP-binding pr 93.7 0.026 9E-07 59.8 2.7 23 552-574 8-30 (301)
314 2qen_A Walker-type ATPase; unk 93.7 0.19 6.4E-06 53.5 9.5 23 552-574 31-53 (350)
315 3ice_A Transcription terminati 93.6 0.034 1.2E-06 60.5 3.3 33 544-576 166-198 (422)
316 1g5t_A COB(I)alamin adenosyltr 93.6 0.33 1.1E-05 47.8 10.1 53 630-686 119-176 (196)
317 1iqp_A RFCS; clamp loader, ext 93.5 0.095 3.3E-06 55.4 6.8 22 554-575 48-69 (327)
318 2plr_A DTMP kinase, probable t 93.5 0.034 1.2E-06 54.9 3.1 23 552-574 4-26 (213)
319 2c95_A Adenylate kinase 1; tra 93.4 0.035 1.2E-06 54.2 3.0 24 551-574 8-31 (196)
320 2v54_A DTMP kinase, thymidylat 93.4 0.035 1.2E-06 54.6 2.9 24 551-574 3-26 (204)
321 3u61_B DNA polymerase accessor 93.4 0.063 2.2E-06 57.1 5.1 22 553-574 49-70 (324)
322 3trf_A Shikimate kinase, SK; a 93.3 0.037 1.3E-06 53.6 2.7 23 552-574 5-27 (185)
323 2wwf_A Thymidilate kinase, put 93.2 0.038 1.3E-06 54.7 2.9 24 551-574 9-32 (212)
324 2bjv_A PSP operon transcriptio 93.2 0.12 4.1E-06 53.3 6.8 23 553-575 30-52 (265)
325 2wjg_A FEOB, ferrous iron tran 93.2 0.034 1.2E-06 53.7 2.5 22 553-574 8-29 (188)
326 1qf9_A UMP/CMP kinase, protein 93.2 0.046 1.6E-06 53.0 3.4 23 552-574 6-28 (194)
327 1gtv_A TMK, thymidylate kinase 93.2 0.019 6.6E-07 57.0 0.6 21 554-574 2-22 (214)
328 2z0h_A DTMP kinase, thymidylat 93.2 0.037 1.3E-06 54.0 2.7 21 554-574 2-22 (197)
329 3ake_A Cytidylate kinase; CMP 93.1 0.038 1.3E-06 54.5 2.7 21 554-574 4-24 (208)
330 1w4r_A Thymidine kinase; type 93.1 0.038 1.3E-06 54.4 2.6 107 551-678 19-130 (195)
331 2zej_A Dardarin, leucine-rich 93.1 0.037 1.3E-06 53.6 2.5 21 554-574 4-24 (184)
332 1nn5_A Similar to deoxythymidy 93.1 0.043 1.5E-06 54.4 3.0 24 551-574 8-31 (215)
333 1nks_A Adenylate kinase; therm 93.1 0.041 1.4E-06 53.4 2.8 21 554-574 3-23 (194)
334 2a5y_B CED-4; apoptosis; HET: 93.1 0.26 9E-06 56.6 10.0 117 551-681 151-281 (549)
335 3t34_A Dynamin-related protein 93.0 0.36 1.2E-05 52.2 10.6 31 542-575 27-57 (360)
336 1ukz_A Uridylate kinase; trans 93.0 0.051 1.7E-06 53.5 3.3 24 550-573 13-36 (203)
337 2v3c_C SRP54, signal recogniti 93.0 0.085 2.9E-06 58.8 5.5 24 552-575 99-122 (432)
338 2bwj_A Adenylate kinase 5; pho 92.9 0.024 8.1E-07 55.6 0.8 23 552-574 12-34 (199)
339 1ojl_A Transcriptional regulat 92.9 0.19 6.5E-06 53.2 7.9 24 552-575 25-48 (304)
340 3te6_A Regulatory protein SIR3 92.7 0.2 6.8E-06 53.4 7.6 24 551-574 44-67 (318)
341 2iut_A DNA translocase FTSK; n 92.7 0.078 2.7E-06 60.8 4.7 23 552-574 214-236 (574)
342 3cf2_A TER ATPase, transitiona 92.6 0.26 8.9E-06 59.0 9.3 23 552-574 238-260 (806)
343 3a4m_A L-seryl-tRNA(SEC) kinas 92.6 0.055 1.9E-06 55.9 3.1 23 552-574 4-26 (260)
344 3zvl_A Bifunctional polynucleo 92.5 0.06 2.1E-06 59.8 3.5 33 542-574 248-280 (416)
345 1e6c_A Shikimate kinase; phosp 92.5 0.049 1.7E-06 52.0 2.4 22 553-574 3-24 (173)
346 1xjc_A MOBB protein homolog; s 92.4 0.055 1.9E-06 52.2 2.7 22 553-574 5-26 (169)
347 1f6b_A SAR1; gtpases, N-termin 92.4 0.042 1.4E-06 54.0 1.8 33 541-574 15-47 (198)
348 3ld9_A DTMP kinase, thymidylat 92.4 0.27 9.3E-06 49.5 7.8 25 550-574 19-43 (223)
349 3pxg_A Negative regulator of g 92.3 0.09 3.1E-06 59.3 4.6 24 553-576 202-225 (468)
350 2pbr_A DTMP kinase, thymidylat 92.3 0.059 2E-06 52.4 2.6 21 554-574 2-22 (195)
351 1zak_A Adenylate kinase; ATP:A 92.2 0.062 2.1E-06 53.9 2.8 23 552-574 5-27 (222)
352 3fb4_A Adenylate kinase; psych 92.1 0.061 2.1E-06 53.5 2.7 20 554-573 2-21 (216)
353 1zd8_A GTP:AMP phosphotransfer 92.1 0.062 2.1E-06 54.1 2.7 22 552-573 7-28 (227)
354 2orw_A Thymidine kinase; TMTK, 92.1 0.068 2.3E-06 52.3 2.9 22 552-573 3-24 (184)
355 2iyv_A Shikimate kinase, SK; t 92.1 0.059 2E-06 52.1 2.4 22 553-574 3-24 (184)
356 1aky_A Adenylate kinase; ATP:A 92.1 0.068 2.3E-06 53.5 2.9 24 551-574 3-26 (220)
357 2pt5_A Shikimate kinase, SK; a 92.0 0.065 2.2E-06 50.8 2.6 21 554-574 2-22 (168)
358 2cdn_A Adenylate kinase; phosp 91.9 0.075 2.5E-06 52.3 3.0 24 551-574 19-42 (201)
359 1a7j_A Phosphoribulokinase; tr 91.9 0.053 1.8E-06 57.1 2.0 23 552-574 5-27 (290)
360 1m2o_B GTP-binding protein SAR 91.9 0.071 2.4E-06 51.9 2.7 32 542-574 14-45 (190)
361 3dl0_A Adenylate kinase; phosp 91.8 0.072 2.5E-06 53.0 2.7 20 554-573 2-21 (216)
362 1sxj_B Activator 1 37 kDa subu 91.7 0.18 6.2E-06 53.1 5.9 21 555-575 45-65 (323)
363 4ag6_A VIRB4 ATPase, type IV s 91.7 0.087 3E-06 57.9 3.4 23 552-574 35-57 (392)
364 2xb4_A Adenylate kinase; ATP-b 91.7 0.074 2.5E-06 53.5 2.6 21 554-574 2-22 (223)
365 1uj2_A Uridine-cytidine kinase 91.6 0.085 2.9E-06 54.1 3.1 24 551-574 21-44 (252)
366 1zuh_A Shikimate kinase; alpha 91.5 0.081 2.8E-06 50.4 2.7 22 553-574 8-29 (168)
367 1sky_E F1-ATPase, F1-ATP synth 91.5 0.16 5.6E-06 56.7 5.4 30 547-576 146-175 (473)
368 2grj_A Dephospho-COA kinase; T 91.3 0.087 3E-06 51.9 2.7 23 552-574 12-34 (192)
369 2f6r_A COA synthase, bifunctio 91.0 0.1 3.6E-06 54.6 3.1 23 551-573 74-96 (281)
370 1z6t_A APAF-1, apoptotic prote 91.0 0.48 1.6E-05 54.8 9.0 117 550-679 145-271 (591)
371 1ltq_A Polynucleotide kinase; 91.0 0.099 3.4E-06 54.9 2.9 22 553-574 3-24 (301)
372 1w36_D RECD, exodeoxyribonucle 90.9 0.22 7.4E-06 58.1 6.0 22 552-573 164-185 (608)
373 3tlx_A Adenylate kinase 2; str 90.9 0.11 3.9E-06 53.0 3.1 23 551-573 28-50 (243)
374 2qmh_A HPR kinase/phosphorylas 90.9 0.12 4E-06 51.1 3.0 30 543-573 26-55 (205)
375 4edh_A DTMP kinase, thymidylat 90.8 0.11 3.9E-06 51.9 3.1 24 551-574 5-28 (213)
376 1r6b_X CLPA protein; AAA+, N-t 90.7 0.32 1.1E-05 58.2 7.4 26 551-576 206-231 (758)
377 2qtf_A Protein HFLX, GTP-bindi 90.6 0.1 3.5E-06 56.8 2.6 21 554-574 181-201 (364)
378 1e4v_A Adenylate kinase; trans 90.4 0.11 3.9E-06 51.6 2.6 21 554-574 2-22 (214)
379 2j37_W Signal recognition part 90.4 0.56 1.9E-05 53.1 8.6 24 551-574 100-123 (504)
380 1qvr_A CLPB protein; coiled co 90.2 0.23 8E-06 60.3 5.6 24 553-576 589-612 (854)
381 2gno_A DNA polymerase III, gam 90.1 0.29 1E-05 51.8 5.7 101 552-675 18-122 (305)
382 1moz_A ARL1, ADP-ribosylation 90.1 0.11 3.9E-06 49.5 2.2 22 552-573 18-39 (183)
383 3lv8_A DTMP kinase, thymidylat 90.1 0.13 4.6E-06 52.3 2.8 24 551-574 26-49 (236)
384 3v9p_A DTMP kinase, thymidylat 90.0 0.12 4.2E-06 52.2 2.4 24 551-574 24-47 (227)
385 1mky_A Probable GTP-binding pr 90.0 0.12 4E-06 57.8 2.5 23 553-575 181-203 (439)
386 3k53_A Ferrous iron transport 89.9 0.12 4.2E-06 53.6 2.4 22 554-575 5-26 (271)
387 1fzq_A ADP-ribosylation factor 89.8 0.13 4.5E-06 49.4 2.4 22 553-574 17-38 (181)
388 4tmk_A Protein (thymidylate ki 89.7 0.15 5.2E-06 51.0 2.8 23 552-574 3-25 (213)
389 2ged_A SR-beta, signal recogni 89.6 0.14 4.8E-06 49.5 2.5 22 553-574 49-70 (193)
390 3be4_A Adenylate kinase; malar 89.5 0.15 5.3E-06 50.8 2.7 23 552-574 5-27 (217)
391 2ocp_A DGK, deoxyguanosine kin 89.4 0.17 5.9E-06 51.3 3.0 23 552-574 2-24 (241)
392 3exa_A TRNA delta(2)-isopenten 89.3 0.17 5.9E-06 53.5 3.0 22 552-573 3-24 (322)
393 2qag_A Septin-2, protein NEDD5 89.2 0.13 4.4E-06 56.0 2.0 27 541-573 32-58 (361)
394 2fv8_A H6, RHO-related GTP-bin 89.1 0.17 5.9E-06 49.8 2.7 36 539-574 12-47 (207)
395 3d3q_A TRNA delta(2)-isopenten 89.1 0.16 5.5E-06 54.5 2.7 22 553-574 8-29 (340)
396 2xxa_A Signal recognition part 89.1 1.3 4.5E-05 49.1 10.2 25 550-574 98-122 (433)
397 2dyk_A GTP-binding protein; GT 89.1 0.17 5.7E-06 47.1 2.5 21 554-574 3-23 (161)
398 2dby_A GTP-binding protein; GD 89.0 0.28 9.6E-06 53.4 4.5 22 554-575 3-24 (368)
399 1z2a_A RAS-related protein RAB 89.0 0.17 5.8E-06 47.3 2.4 21 554-574 7-27 (168)
400 3crm_A TRNA delta(2)-isopenten 88.9 0.18 6.2E-06 53.7 2.9 22 553-574 6-27 (323)
401 1ak2_A Adenylate kinase isoenz 88.9 0.2 6.7E-06 50.6 3.0 23 552-574 16-38 (233)
402 3umf_A Adenylate kinase; rossm 88.9 0.2 6.9E-06 50.2 3.1 25 550-574 27-51 (217)
403 2h92_A Cytidylate kinase; ross 88.9 0.17 5.8E-06 50.3 2.5 22 553-574 4-25 (219)
404 2ce2_X GTPase HRAS; signaling 88.8 0.18 6E-06 46.9 2.4 21 554-574 5-25 (166)
405 1p5z_B DCK, deoxycytidine kina 88.8 0.2 6.9E-06 51.6 3.1 24 551-574 23-46 (263)
406 3foz_A TRNA delta(2)-isopenten 88.5 0.21 7.1E-06 52.8 2.9 23 552-574 10-32 (316)
407 1ek0_A Protein (GTP-binding pr 88.4 0.19 6.6E-06 46.9 2.4 21 554-574 5-25 (170)
408 1kao_A RAP2A; GTP-binding prot 88.4 0.19 6.7E-06 46.7 2.4 20 554-573 5-24 (167)
409 1z0j_A RAB-22, RAS-related pro 88.4 0.19 6.7E-06 47.0 2.4 21 554-574 8-28 (170)
410 2ohf_A Protein OLA1, GTP-bindi 88.3 0.2 6.7E-06 55.0 2.7 25 551-575 21-45 (396)
411 3q72_A GTP-binding protein RAD 88.3 0.2 6.8E-06 46.8 2.4 20 554-573 4-23 (166)
412 1ky3_A GTP-binding protein YPT 88.2 0.2 6.8E-06 47.5 2.4 20 554-573 10-29 (182)
413 1u8z_A RAS-related protein RAL 88.2 0.2 6.9E-06 46.6 2.4 21 554-574 6-26 (168)
414 1z08_A RAS-related protein RAB 88.2 0.2 6.8E-06 47.0 2.4 21 554-574 8-28 (170)
415 2erx_A GTP-binding protein DI- 88.2 0.2 6.9E-06 46.9 2.4 21 554-574 5-25 (172)
416 3tmk_A Thymidylate kinase; pho 88.2 0.23 8E-06 49.8 3.0 24 551-574 4-27 (216)
417 4dcu_A GTP-binding protein ENG 88.2 0.34 1.1E-05 54.4 4.6 33 539-574 13-45 (456)
418 1g16_A RAS-related protein SEC 88.1 0.21 7.1E-06 46.8 2.4 20 554-573 5-24 (170)
419 1wms_A RAB-9, RAB9, RAS-relate 88.1 0.21 7E-06 47.3 2.4 20 554-573 9-28 (177)
420 3e2i_A Thymidine kinase; Zn-bi 88.1 0.25 8.4E-06 49.4 3.0 152 540-710 14-181 (219)
421 1svi_A GTP-binding protein YSX 87.9 0.21 7.1E-06 48.2 2.4 22 553-574 24-45 (195)
422 1c1y_A RAS-related protein RAP 87.9 0.22 7.5E-06 46.5 2.4 20 554-573 5-24 (167)
423 3q85_A GTP-binding protein REM 87.9 0.22 7.5E-06 46.7 2.4 19 555-573 5-23 (169)
424 3tw8_B RAS-related protein RAB 87.8 0.22 7.5E-06 47.2 2.4 20 554-573 11-30 (181)
425 2nzj_A GTP-binding protein REM 87.8 0.22 7.6E-06 46.9 2.4 20 554-573 6-25 (175)
426 1upt_A ARL1, ADP-ribosylation 87.7 0.23 7.8E-06 46.6 2.4 21 553-573 8-28 (171)
427 2lkc_A Translation initiation 87.6 0.27 9.3E-06 46.5 3.0 23 552-574 8-30 (178)
428 2cxx_A Probable GTP-binding pr 87.6 0.23 7.8E-06 47.6 2.4 19 555-573 4-22 (190)
429 3pqc_A Probable GTP-binding pr 87.6 0.23 7.8E-06 47.8 2.4 20 554-573 25-44 (195)
430 3tqf_A HPR(Ser) kinase; transf 87.5 0.29 9.8E-06 47.2 2.9 21 552-572 16-36 (181)
431 3pxi_A Negative regulator of g 87.3 0.4 1.4E-05 57.4 4.8 24 553-576 202-225 (758)
432 2r62_A Cell division protease 87.1 0.13 4.5E-06 52.9 0.4 22 554-575 46-67 (268)
433 2fn4_A P23, RAS-related protei 87.1 0.25 8.7E-06 46.7 2.4 21 554-574 11-31 (181)
434 2y8e_A RAB-protein 6, GH09086P 87.0 0.26 8.9E-06 46.5 2.4 20 554-573 16-35 (179)
435 4dsu_A GTPase KRAS, isoform 2B 86.9 0.26 9E-06 47.0 2.4 20 554-573 6-25 (189)
436 1r2q_A RAS-related protein RAB 86.9 0.27 9.2E-06 45.9 2.4 21 554-574 8-28 (170)
437 3pxi_A Negative regulator of g 86.9 0.97 3.3E-05 54.1 7.8 23 554-576 523-545 (758)
438 3ihw_A Centg3; RAS, centaurin, 86.8 0.27 9.1E-06 47.5 2.4 20 554-573 22-41 (184)
439 4hlc_A DTMP kinase, thymidylat 86.8 0.31 1.1E-05 48.4 2.9 23 552-574 2-24 (205)
440 3a8t_A Adenylate isopentenyltr 86.8 0.32 1.1E-05 52.0 3.2 24 551-574 39-62 (339)
441 3cbq_A GTP-binding protein REM 86.8 0.28 9.4E-06 47.9 2.5 20 554-573 25-44 (195)
442 3vkw_A Replicase large subunit 86.7 0.52 1.8E-05 52.3 4.9 23 551-573 160-182 (446)
443 1z0f_A RAB14, member RAS oncog 86.7 0.28 9.6E-06 46.3 2.4 21 554-574 17-37 (179)
444 2bme_A RAB4A, RAS-related prot 86.7 0.28 9.5E-06 46.9 2.4 20 554-573 12-31 (186)
445 3sr0_A Adenylate kinase; phosp 86.7 0.3 1E-05 48.6 2.7 21 554-574 2-22 (206)
446 2a9k_A RAS-related protein RAL 86.6 0.28 9.7E-06 46.7 2.4 21 554-574 20-40 (187)
447 3b1v_A Ferrous iron uptake tra 86.6 0.28 9.7E-06 51.0 2.6 22 553-574 4-25 (272)
448 1r8s_A ADP-ribosylation factor 86.6 0.29 9.9E-06 45.6 2.4 20 555-574 3-22 (164)
449 1nrj_B SR-beta, signal recogni 86.6 0.28 9.6E-06 48.4 2.5 22 553-574 13-34 (218)
450 2oil_A CATX-8, RAS-related pro 86.5 0.28 9.7E-06 47.3 2.4 21 554-574 27-47 (193)
451 3bc1_A RAS-related protein RAB 86.5 0.29 9.8E-06 46.9 2.4 21 554-574 13-33 (195)
452 3con_A GTPase NRAS; structural 86.5 0.29 9.9E-06 47.0 2.5 21 554-574 23-43 (190)
453 1m7b_A RND3/RHOE small GTP-bin 86.4 0.29 9.9E-06 47.0 2.4 21 554-574 9-29 (184)
454 2wsm_A Hydrogenase expression/ 86.4 0.31 1E-05 48.3 2.6 23 552-574 30-52 (221)
455 2hxs_A RAB-26, RAS-related pro 86.3 0.3 1E-05 46.2 2.4 21 554-574 8-28 (178)
456 2efe_B Small GTP-binding prote 86.1 0.31 1.1E-05 46.3 2.4 21 554-574 14-34 (181)
457 3kkq_A RAS-related protein M-R 86.0 0.32 1.1E-05 46.4 2.4 20 554-573 20-39 (183)
458 2bov_A RAla, RAS-related prote 85.9 0.32 1.1E-05 47.3 2.4 20 554-573 16-35 (206)
459 1zcb_A G alpha I/13; GTP-bindi 85.8 0.31 1.1E-05 52.9 2.4 21 553-573 34-54 (362)
460 1c9k_A COBU, adenosylcobinamid 85.8 0.33 1.1E-05 47.2 2.4 21 554-574 1-21 (180)
461 2g6b_A RAS-related protein RAB 85.7 0.34 1.1E-05 45.9 2.4 21 554-574 12-32 (180)
462 1vg8_A RAS-related protein RAB 85.7 0.33 1.1E-05 47.3 2.4 21 554-574 10-30 (207)
463 3t5g_A GTP-binding protein RHE 85.6 0.34 1.2E-05 46.1 2.4 20 554-573 8-27 (181)
464 3t1o_A Gliding protein MGLA; G 85.6 0.34 1.2E-05 46.6 2.4 20 554-573 16-35 (198)
465 3clv_A RAB5 protein, putative; 85.6 0.34 1.1E-05 46.7 2.4 21 554-574 9-29 (208)
466 1mh1_A RAC1; GTP-binding, GTPa 85.5 0.34 1.2E-05 46.1 2.4 20 554-573 7-26 (186)
467 1ksh_A ARF-like protein 2; sma 85.5 0.35 1.2E-05 46.3 2.4 22 553-574 19-40 (186)
468 3tkl_A RAS-related protein RAB 85.3 0.35 1.2E-05 46.5 2.4 20 554-573 18-37 (196)
469 2gf0_A GTP-binding protein DI- 85.3 0.36 1.2E-05 46.7 2.4 21 554-574 10-30 (199)
470 2fg5_A RAB-22B, RAS-related pr 85.2 0.36 1.2E-05 46.7 2.4 21 554-574 25-45 (192)
471 2o52_A RAS-related protein RAB 85.2 0.36 1.2E-05 47.1 2.4 20 554-573 27-46 (200)
472 2h57_A ADP-ribosylation factor 85.2 0.37 1.3E-05 46.4 2.5 22 553-574 22-43 (190)
473 2gf9_A RAS-related protein RAB 85.1 0.37 1.3E-05 46.4 2.4 21 554-574 24-44 (189)
474 1vt4_I APAF-1 related killer D 85.1 3 0.0001 51.2 10.6 22 552-573 150-171 (1221)
475 2ew1_A RAS-related protein RAB 85.1 0.37 1.3E-05 47.4 2.4 21 554-574 28-48 (201)
476 1r6b_X CLPA protein; AAA+, N-t 85.1 0.95 3.2E-05 54.1 6.5 23 554-576 490-512 (758)
477 3eph_A TRNA isopentenyltransfe 85.0 0.42 1.4E-05 52.4 3.0 21 553-573 3-23 (409)
478 2il1_A RAB12; G-protein, GDP, 84.9 0.38 1.3E-05 46.5 2.4 21 554-574 28-48 (192)
479 2hf9_A Probable hydrogenase ni 84.8 0.4 1.4E-05 47.6 2.6 23 552-574 38-60 (226)
480 1zj6_A ADP-ribosylation factor 84.6 0.4 1.4E-05 46.0 2.4 22 552-573 16-37 (187)
481 3dz8_A RAS-related protein RAB 84.5 0.4 1.4E-05 46.2 2.4 21 554-574 25-45 (191)
482 2a5j_A RAS-related protein RAB 84.5 0.41 1.4E-05 46.2 2.4 21 554-574 23-43 (191)
483 1tue_A Replication protein E1; 84.3 0.39 1.3E-05 47.6 2.2 25 551-575 57-81 (212)
484 2xtz_A Guanine nucleotide-bind 84.3 0.42 1.4E-05 51.7 2.6 21 554-574 11-31 (354)
485 2r2a_A Uncharacterized protein 84.3 0.46 1.6E-05 46.9 2.7 20 553-572 6-25 (199)
486 1z06_A RAS-related protein RAB 84.3 0.43 1.5E-05 45.9 2.4 20 554-573 22-41 (189)
487 3oes_A GTPase rhebl1; small GT 84.2 0.42 1.4E-05 46.6 2.4 22 553-574 25-46 (201)
488 2bcg_Y Protein YP2, GTP-bindin 84.2 0.42 1.4E-05 46.7 2.4 21 554-574 10-30 (206)
489 1ofh_A ATP-dependent HSL prote 84.2 0.45 1.5E-05 49.7 2.8 23 553-575 51-73 (310)
490 2h17_A ADP-ribosylation factor 84.2 0.4 1.4E-05 45.8 2.2 21 554-574 23-43 (181)
491 3reg_A RHO-like small GTPase; 84.0 0.44 1.5E-05 46.0 2.4 21 554-574 25-45 (194)
492 1zd9_A ADP-ribosylation factor 84.0 0.44 1.5E-05 45.8 2.4 21 554-574 24-44 (188)
493 2b6h_A ADP-ribosylation factor 84.0 0.44 1.5E-05 46.2 2.4 22 552-573 29-50 (192)
494 2cjw_A GTP-binding protein GEM 84.0 0.44 1.5E-05 46.3 2.4 20 554-573 8-27 (192)
495 1zbd_A Rabphilin-3A; G protein 83.9 0.45 1.5E-05 46.3 2.4 21 554-574 10-30 (203)
496 1x3s_A RAS-related protein RAB 83.9 0.45 1.5E-05 45.7 2.4 21 554-574 17-37 (195)
497 1gwn_A RHO-related GTP-binding 83.8 0.45 1.5E-05 46.8 2.4 21 554-574 30-50 (205)
498 2atv_A RERG, RAS-like estrogen 83.7 0.46 1.6E-05 46.0 2.4 22 553-574 29-50 (196)
499 3lxw_A GTPase IMAP family memb 83.7 0.45 1.5E-05 48.6 2.4 22 553-574 22-43 (247)
500 3iev_A GTP-binding protein ERA 83.7 0.47 1.6E-05 50.2 2.6 22 553-574 11-32 (308)
No 1
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=3.3e-128 Score=1169.09 Aligned_cols=780 Identities=41% Similarity=0.716 Sum_probs=646.3
Q ss_pred Cccccc--ccCCCCCeEEEEecCCceeehhHHHHHHHH---hcCccccccccCC-CCCCcceEEeccCChHHHHHH-HHh
Q psy5289 2 KFYLFF--FPQKSKTTIRFFNRVEFYCVHGEDAELIQR---KSNVVYLVKTMGQ-KDKTLETVLVNKSNLSCFSHI-LCV 74 (813)
Q Consensus 2 ~f~~~~--lk~k~~d~ilffr~GDFYe~f~eDA~~~a~---~t~~~~~~~~~g~-~~~gvp~~~~~~~~~~~yi~~-L~~ 74 (813)
||++|| ||+||||||+|||+|||||+|++||+++|+ +|.. ++|++|. +..|+|||+++.++|++|+++ |+.
T Consensus 18 ~f~~~y~~Lk~k~~dtv~~F~~GdfYe~~~~DA~~vA~~l~~t~~--~~k~~~~~~~~~~~~v~i~~~~~~~~l~~~Ll~ 95 (934)
T 3thx_A 18 GFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQG--VIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLV 95 (934)
T ss_dssp HHHHHHHTSCCCCTTEEEEEECSSEEEEETHHHHHHHHHTTSSST--TCEEESSSSCCCEEEEEEEHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccccCCCeEEEEEcCCeeeeehhhHHHHHHHHhhhhh--hhhccCCCCCCCCCeeeeCHHHHHHHHHHHHHH
Confidence 788888 999999999999999999999999999999 5665 6788887 448999999999999999998 776
Q ss_pred cc-----------------Ccee------------eeccc----------------------CCeEEEEEEECCCCeEEe
Q psy5289 75 IS-----------------EDKT------------LETVL----------------------TNTVGVAIVDLDTKKFYM 103 (813)
Q Consensus 75 ~~-----------------~~~~------------~e~~l----------------------~~~vGiA~~D~stge~~~ 103 (813)
+| ..|+ +||+| ...+|+||+|+|||+|.+
T Consensus 96 ~g~rVei~~q~~~~~~~~~~~r~l~~~~TPGnl~~~ed~L~~~~d~~~~~~l~AIk~~~~~~~~~~Gla~~D~stge~~~ 175 (934)
T 3thx_A 96 RQYRVEVYKNRAGNKASKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGL 175 (934)
T ss_dssp TCCEEEEEEECC----CCCCCEEEEEEEBTTBCTTCHHHHC--------CCEEEEEECCSSSSCEEEEEEEETTTTEEEE
T ss_pred cCCEEEEEecCCcccccCccceEEEEEECCCcHHHHHHHhhccccccccceEEEEEEeecCCCcEEEEEEEECCCCeEEE
Confidence 63 1343 23332 357999999999999999
Q ss_pred eecCCchhHHHHHHHHHhcCCcEEEeCCCCCCcchhHHHHhhhcCCeeeeccCCCCCChhHHHHHHHHhhccccchhhhc
Q psy5289 104 GEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNA 183 (813)
Q Consensus 104 ~ef~D~~~~~~L~s~L~~~~P~Eili~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~~~~~~~L~~l~~~~~~~~~~~ 183 (813)
++|.|++.|++|+++|.+++|+|||+|++...++..++..++.++++.++..+.++|+.+.+.+.+.+++++..+.....
T Consensus 176 ~~~~d~~~~~~l~~~l~~~~P~Eil~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~ 255 (934)
T 3thx_A 176 CEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRGGILITERKKADFSTKDIYQDLNRLLKGKKGEQMNS 255 (934)
T ss_dssp EEEECCTTCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHHHHHTCEEEEECGGGGCCSSHHHHHHHHBCCCTTSCCCG
T ss_pred EecCCchHHHHHHHHHHhCCCeEEEeeCCCCcccHHHHHHHHhhcCceEEecchhhcCHHHHHHHHHHHhcccccccccc
Confidence 99999988999999999999999999964122233455666666777888889999998888888998887533222223
Q ss_pred cccccccchhHHHHHHHHHHHHHHhcCCCCCCcceeEEeccCCeEeeCHHHHhhcccccccCCCccccccchhhhhhccc
Q psy5289 184 RLLPEMCLTTATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCR 263 (813)
Q Consensus 184 ~~l~~~~~~~a~~A~gaLL~YL~~~~~~~~~~~~~i~~~~~~~~M~LD~~Tl~~LeI~~~~~~~~~k~~~SLf~lLn~t~ 263 (813)
.+++..+.+++++|+||||+||+.+++..+++.+++..+..+++|.||++|++||||++|.++++.+ ++|||++||+|+
T Consensus 256 ~~~~~~~~~~~~~a~gall~Yl~~~~~~~~~~~~~~~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~-~~SL~~~ld~t~ 334 (934)
T 3thx_A 256 AVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGSVEDTTG-SQSLAALLNKCK 334 (934)
T ss_dssp GGCGGGGCHHHHHHHHHHHHHHTGGGCGGGTTCBEEEECCGGGBCEECHHHHHHTTSCC----------CCHHHHHCCCS
T ss_pred ccccccccHHHHHHHHHHHHHHHHhcCccccccccceEEcCCCeEEeCHHHHhhccccccCCCCCCC-CCcHHHHhccCC
Confidence 4455566788999999999999999987667778899999999999999999999999998764324 679999999999
Q ss_pred CchhHHHHHHHhhCcCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCcHHHHHHHHhccCCCHHHHHHHHHHHhhH
Q psy5289 264 TPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQL 343 (813)
Q Consensus 264 T~~G~RlLr~wL~~PL~d~~~I~~R~d~Ve~l~~~~~lr~~l~~~~Lk~i~Dlerll~rl~~~~~~~~d~~~l~~~l~~l 343 (813)
||||+|+||+||++||+|+++|++|||+|++|+++.++|..++...|+++||++|+++|+..++++++|++++++++..+
T Consensus 335 T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~~L~~i~DleRl~~ri~~~~~~~~dl~~l~~~l~~~ 414 (934)
T 3thx_A 335 TPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQL 414 (934)
T ss_dssp SHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCHHHHHHHHTTTGGGCCCHHHHHHHHHTTCCCHHHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHhhChHHHHHHHHHHhcCCCCHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999995259999999999999999999999999999999999
Q ss_pred HHHHHHHHH-------HHhhHhHHhHHHHHHhhhhhhhh----------------------HHHHHHHHHH-------HH
Q psy5289 344 PKLISILES-------LVQNVEASNLNTILSSLQSLKMM----------------------DRKDAVMDKM-------KE 387 (813)
Q Consensus 344 ~~l~~~l~~-------~~~~~~~~~l~~~~~~~~~~~~~----------------------~~l~~l~~~~-------~~ 387 (813)
|.+.+.+.. .+...+..++.+...++..+.++ ++||++++.+ .+
T Consensus 415 ~~l~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~i~~~i~~~~~~~g~~~i~~g~~~~Ld~lr~~~~~~~~~l~~ 494 (934)
T 3thx_A 415 PNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQS 494 (934)
T ss_dssp HHHHHHHHHTCCSSSTTGGGGTHHHHHHHHHHHHHHHHHHHTTBCTTGGGTTCCCBCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcchhhcCCceeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999988864 11122223333222222111110 6677766554 34
Q ss_pred HHHHHHHHhCcccccceeEeecCc-ceEEEEeccccccc--CcCceEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHH
Q psy5289 388 YLESTARRLNLVADKTIKLENSPQ-GFAYRITMKLNNSI--DDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQ 464 (813)
Q Consensus 388 ~~~~~~~~~~~~~~~~lk~~~~~~-gy~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~ 464 (813)
.+.+++++++++..+++|+.|+++ ||||+|+++....+ |.+|+++++++|++||+|++++++++++.++++++.+.+
T Consensus 495 ~~~~~~~~~~~~~~~~lk~~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~t~~~~~rf~t~el~~l~~~~~~~~~~~~~~e 574 (934)
T 3thx_A 495 TLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQ 574 (934)
T ss_dssp HHHHHHHHSCCCBTTTBEEEECC--CEEEEECHHHHTTTTTCSSCEEEEEC--CEEEECTTHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHhCCCccceEEEEEeccceEEEEEEechhhccCCCCCcEEEEcccCeEEEECHHHHHHHHHHHHHHHHHHHHH
Confidence 455555678876557899999999 99999997655444 467999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCCcceEEEEccccCeeEecCCceeeccc
Q psy5289 465 QSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPND 544 (813)
Q Consensus 465 ~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~S~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~e~~~~~~~i~n~ 544 (813)
.+++.++.+.+.+|.+.|..+++++|+|||++|||.+|...+++||||++.+.+++.+.|+++|||+++...+..|||||
T Consensus 575 ~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~rP~~~~~~~~~i~i~~~rHP~le~~~~~~~v~nd 654 (934)
T 3thx_A 575 DAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPND 654 (934)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCBCCEEECTTSCEEEEEEECCTTTTTC--CCCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCeeccCCCcceEeecCccchhhhcCCceeeccc
Confidence 99999999999999999999999999999999999999877789999999864356799999999999865456799999
Q ss_pred cccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHH
Q psy5289 545 VYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETAT 624 (813)
Q Consensus 545 v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~ 624 (813)
++|+.+.|++++||||||||||||||++|++++++|+|+++|+..+.+++++++++++|+.|++..+.|+||++|.+++.
T Consensus 655 isl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~ 734 (934)
T 3thx_A 655 VYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETAS 734 (934)
T ss_dssp EEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHH
T ss_pred ceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCeEEEE
Q psy5289 625 VIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLL 704 (813)
Q Consensus 625 il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i~~~ 704 (813)
|++.+++|+||||||||+|||+.++.++++++++++.++.|+++||+|||++++.++++++.+.||||.+..++++++|+
T Consensus 735 il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~~~ 814 (934)
T 3thx_A 735 ILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTML 814 (934)
T ss_dssp HHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEEEE
T ss_pred HHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEEEE
Confidence 99999999999999999999999999999999999986469999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHhhhcCCCCC----CCCccchhhhhHhhHHHHHHHHHHHHHHH
Q psy5289 705 YQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPS----GDETNNREEEYFKTVQEGEYQMFDFLQQC 780 (813)
Q Consensus 705 y~l~~G~~~~s~gi~vA~~ag~p~~vi~~A~~~~~~le~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 780 (813)
|++.+|++++||||+||+++|+|++||+||++++++||.....+... ..+....+ ..+.+.+..++++|++.|
T Consensus 815 y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~~le~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 891 (934)
T 3thx_A 815 YQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQYIGESQGYDIMEPAAKKC---YLEREQGEKIIQEFLSKV 891 (934)
T ss_dssp EEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHHHTTTTTC---------------CC---SHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccccccccccccccc---cccccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999776432211 00000000 124456778888999999
Q ss_pred hcccccc
Q psy5289 781 LSLSKQK 787 (813)
Q Consensus 781 ~~~~~~~ 787 (813)
++.+.+.
T Consensus 892 ~~l~~~~ 898 (934)
T 3thx_A 892 KQMPFTE 898 (934)
T ss_dssp HTCCGGG
T ss_pred HcCCccc
Confidence 9886443
No 2
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=1.1e-120 Score=1099.98 Aligned_cols=752 Identities=24% Similarity=0.371 Sum_probs=590.4
Q ss_pred ccccc-ccCCCCCeEEEEecCCceeehhHHHHHHHHhcCccccccccCCCC-CCcceEEeccCChHHHHHHHHhcc----
Q psy5289 3 FYLFF-FPQKSKTTIRFFNRVEFYCVHGEDAELIQRKSNVVYLVKTMGQKD-KTLETVLVNKSNLSCFSHILCVIS---- 76 (813)
Q Consensus 3 f~~~~-lk~k~~d~ilffr~GDFYe~f~eDA~~~a~~t~~~~~~~~~g~~~-~gvp~~~~~~~~~~~yi~~L~~~~---- 76 (813)
+.||| +|++|||||||||||||||||||||++||+..+. .+...+.-| ||||||++ +.|+++||.+|
T Consensus 17 m~Qy~~iK~~~~D~lLffr~GdFYElF~eDA~~as~~L~i--~lt~~~~~pmaGvP~ha~-----~~yl~rLv~~G~kVa 89 (918)
T 3thx_B 17 ELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNI--YCHLDHNFMTASIPTHRL-----FVHVRRLVAKGYKVG 89 (918)
T ss_dssp HHHHHHHHTTTTTSEEEEECSSEEEEEHHHHHHHHHHHTC--CCEEETTEEEEEEEGGGH-----HHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHCCCeEEEEEcCCEeeeeHhhHHHHHHHhCc--eeecCCCeeEEeccHhHH-----HHHHHHHHHcCCcEE
Confidence 35777 9999999999999999999999999999992221 122333334 89999999 99999999985
Q ss_pred -------------------------------Cceeeecc---------------c--------------CC---------
Q psy5289 77 -------------------------------EDKTLETV---------------L--------------TN--------- 87 (813)
Q Consensus 77 -------------------------------~~~~~e~~---------------l--------------~~--------- 87 (813)
||+..+++ | ..
T Consensus 90 i~eQ~E~p~~k~~~~~k~~~v~R~v~rvvTpGT~~d~~~~~~~~~~~~~~~~~~l~~~~~nyL~ai~~~~~~~~~~~~~~ 169 (918)
T 3thx_B 90 VVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGN 169 (918)
T ss_dssp EEEECSCHHHHTTSTTCSSCCCEEEEEEECTTCCCSTTTCCEEEC--CEEECCCSCTTSCCCEEEEEEEC---------C
T ss_pred EEeccCChhhhhcccccCCceeeeEEEEECCCcccccccccccccccccccccccCCCCCcEEEEEEecccccccccccC
Confidence 22212222 3 10
Q ss_pred -eEEEEEEECCCCeEEeeecCCchhHHHHHHHHHhcCCcEEEeCCCCCCcchhHHHHhhh-----cCCeeeeccCCCCCC
Q psy5289 88 -TVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILD-----RNKVCMTGRKKNEFS 161 (813)
Q Consensus 88 -~vGiA~~D~stge~~~~ef~D~~~~~~L~s~L~~~~P~Eili~~~~~~~~~~~l~~~l~-----~~~~~i~~~~~~~F~ 161 (813)
.+|+||+|+|||+|.+++|.|+..+++|.++|.+++|+|||+|++ ......++...+. ...+.++..+.|.|+
T Consensus 170 ~~~Gla~~D~sTGef~~~~f~d~~~~~~L~~~L~~~~P~Eil~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 248 (918)
T 3thx_B 170 IFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSA-LSEQTEALIHRATSVSVQDDRIRVERMDNIYFE 248 (918)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCHHHHHHHHHHCCSEEEEESS-CCHHHHHHHHHHHHSSCSSSCCEEEEECGGGTS
T ss_pred ceEEEEEEEccCCeEEEEEecCchhHHHHHHHHHhcCCeEEEecCC-cchHHHHHHHhhhcccccccceeEEeccccccC
Confidence 499999999999999999999888899999999999999999964 2222222222111 113446667889999
Q ss_pred hhHHHHHHHHhhccccchhhhcccccc--ccchhHHHHHHHHHHHHHHhcCCCCCCcc-eeEEe-ccCCeEeeCHHHHhh
Q psy5289 162 EEDLMQDVNRLVRFDDSELKNARLLPE--MCLTTATHCLRSLINYLELMNNEDNMNQF-SIHSI-DYSKYVHMSSAVMSS 237 (813)
Q Consensus 162 ~~~~~~~L~~l~~~~~~~~~~~~~l~~--~~~~~a~~A~gaLL~YL~~~~~~~~~~~~-~i~~~-~~~~~M~LD~~Tl~~ 237 (813)
...+.+.|.++++...........+.. .....+++|+|++|.||+.++....+.+. .+..+ ..+++|.||++|++|
T Consensus 249 ~~~a~~~l~~~f~~~~l~~~g~~~~~~~~~~~~~~~~A~gall~Yl~~~~~~~~l~~~~~~~~~~~~~~~m~LD~~T~rn 328 (918)
T 3thx_B 249 YSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMTINGTTLRN 328 (918)
T ss_dssp HHHHHHHHHHHCC--------------CCCCCHHHHHHHHHHHHHHHHTTCGGGGSCGGGEEESCCTTTBCEECHHHHHH
T ss_pred hhHHHHHHHHHhCccccccccchhhhhhhcccHHHHHHHHHHHHHHHHhcccccccccccceeecCCCCEEEECHHHHHh
Confidence 888888888877521000000000110 01356899999999999998754333333 45556 578999999999999
Q ss_pred cccccccCCCccccccchhhhhhcccCchhHHHHHHHhhCcCCCHHHHHHHHHHHHHHh-hCHHHHHHHHHHHhcCCCcH
Q psy5289 238 LHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILV-NNTEARMNLHEYALRGLPDM 316 (813)
Q Consensus 238 LeI~~~~~~~~~k~~~SLf~lLn~t~T~~G~RlLr~wL~~PL~d~~~I~~R~d~Ve~l~-~~~~lr~~l~~~~Lk~i~Dl 316 (813)
|||++|.++++ + +|||||+||+|+||||+|+||+||++||+|+++|++|||+|++|. ++..++..++. .|+++||+
T Consensus 329 LEL~~~~~~~~-~-~gSLl~~Ld~t~T~mG~RlLr~Wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~l~~-~L~~i~Dl 405 (918)
T 3thx_B 329 LEILQNQTDMK-T-KGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN-HLRKLPDI 405 (918)
T ss_dssp TTSSSCTTTCS-S-TTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCCCTHHHHHHH-TTTTCCCH
T ss_pred cCCcccCCCCC-C-CCcHHHHHhhCCChHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHH-HHccCccH
Confidence 99999988764 4 689999999999999999999999999999999999999999997 46678899997 99999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHhhHH-HHHHHHHH--------HHhhH---h---HHhHHHHHHhhh-----------
Q psy5289 317 QSLAMRIGRKKAGLKDCYRVYEGVSQLP-KLISILES--------LVQNV---E---ASNLNTILSSLQ----------- 370 (813)
Q Consensus 317 erll~rl~~~~~~~~d~~~l~~~l~~l~-~l~~~l~~--------~~~~~---~---~~~l~~~~~~~~----------- 370 (813)
||+++|+..++++++|++.+.+++..++ .+...+.. ++... + ...+..+.+.+.
T Consensus 406 eRll~ri~~~~~~~~dl~~l~~~l~~l~~~l~~~l~~~~~~~~~~lL~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (918)
T 3thx_B 406 ERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQSDLLRTVILEIPELLSPVEHYLKILNEQAAKVGDKTE 485 (918)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHTGGGHHHHTTSCHHHHHHTCSTT
T ss_pred HHHHHHhccCcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhcCCccc
Confidence 9999999999999999999999998887 34333321 00000 0 011111111111
Q ss_pred ---hhhhhHHHHHHHHHHHHHHHHHHHH-----hCcccccceeEeecCc-c--eEEEEecccccccCcCceEeeeecceE
Q psy5289 371 ---SLKMMDRKDAVMDKMKEYLESTARR-----LNLVADKTIKLENSPQ-G--FAYRITMKLNNSIDDRYTILDTVRGGV 439 (813)
Q Consensus 371 ---~~~~~~~l~~l~~~~~~~~~~~~~~-----~~~~~~~~lk~~~~~~-g--y~i~v~~~~~~~~~~~~~~~~~~~~~~ 439 (813)
...+.+.++.+++.+.+...++.+. .++ +.+++.|+.+ | |+|+|+......+|..|+..+++++.+
T Consensus 486 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~i---~~~~~~~~~~~g~~y~iev~~~~~~~vp~~~~~~~~~~~~~ 562 (918)
T 3thx_B 486 LFKDLSDFPLIKKRKDEIQGVIDEIRMHLQEIRKIL---KNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVS 562 (918)
T ss_dssp SCSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TCTTCCCEEETTEEEEEEEETTSGGGSCSSCEEEEECSSEE
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CcccceeEeecCCEEEEEEcHHHHhhCCCeEEEEEecCCee
Confidence 0111133444444444333333321 123 3456788888 7 999999888888999999999999999
Q ss_pred EEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCCc
Q psy5289 440 RFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGT 519 (813)
Q Consensus 440 ~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~S~A~~a~~~~~~~~rP~~~~~~~ 519 (813)
||+|++++++++++..+++++...+++++.++...+.++.+.|+.+++++|+|||++|||.+|.. .+||||++++ +
T Consensus 563 rf~tpel~~~~~~~~~~~e~~~~~e~~~~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~--~ 638 (918)
T 3thx_B 563 RFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQ--GDYCRPTVQE--E 638 (918)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTS--SSCBCCEEES--S
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcCCcccC--C
Confidence 99999999999999999999998899999999999999999999999999999999999999988 7899999986 3
Q ss_pred ceEEEEccccCeeEecC--CceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHH
Q psy5289 520 GSLVLNQCRHPIVELQG--GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQ 597 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~--~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~ 597 (813)
+.+.|+++|||+++... +..+||||++|+.++|++++||||||||||||||++|++++++|+|+++|+..+.++++++
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~ 718 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDG 718 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSE
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHH
Confidence 58999999999998432 3579999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH
Q psy5289 598 IFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEI 677 (813)
Q Consensus 598 i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el 677 (813)
+++++|+.|++..+.|+||+||++++.|++.+++|+||||||||+|||+.++.++++++++++.+..|+++|++|||+++
T Consensus 719 i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el 798 (918)
T 3thx_B 719 IFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPV 798 (918)
T ss_dssp EEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred HHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999975469999999999999
Q ss_pred HhhcCCCCc-eEeeEEEEEEE--------------CCeEEEEEEeccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q psy5289 678 ALLSRVIPT-FRNVQVSALEQ--------------EDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742 (813)
Q Consensus 678 ~~~~~~~~~-v~~~~~~~~~~--------------~~~i~~~y~l~~G~~~~s~gi~vA~~ag~p~~vi~~A~~~~~~le 742 (813)
+.++++++. +.|+||.+..+ +++++|+|++.+|+|++||||+||+++|+|++||+||++++++||
T Consensus 799 ~~l~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~~vi~rA~~~~~~LE 878 (918)
T 3thx_B 799 CELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELE 878 (918)
T ss_dssp GGHHHHTTTTEEEEEEEEECC-----------------CCEEEEEEESCCCTTTTHHHHTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccceEEEEEEEEEcccccccccccccCCCCceeEeeeeccCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 999998885 99999998543 357999999999999999999999999999999999999999998
Q ss_pred hhhcCCCCCCCCccchhhhhHhhHHHHHHHHHHHHHHHhccccccchhHHH
Q psy5289 743 YSLDTKTPSGDETNNREEEYFKTVQEGEYQMFDFLQQCLSLSKQKDTNRIL 793 (813)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 793 (813)
...+ ..++..+.|..-|+........+++.
T Consensus 879 ~~~~---------------------~~~k~~~~~~~~~~~~~~~~~~~~~~ 908 (918)
T 3thx_B 879 GLIN---------------------TKRKRLKYFAKLWTMHNAQDLQKWTE 908 (918)
T ss_dssp HHHH---------------------HHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHH---------------------HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 7642 22344455566666555555555533
No 3
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=1.4e-118 Score=1074.32 Aligned_cols=703 Identities=25% Similarity=0.390 Sum_probs=590.9
Q ss_pred cccc-ccCCCCCeEEEEecCCceeehhHHHHHHHH-----hcCccccccccCC-CC-CCcceEEeccCChHHHHHHHHhc
Q psy5289 4 YLFF-FPQKSKTTIRFFNRVEFYCVHGEDAELIQR-----KSNVVYLVKTMGQ-KD-KTLETVLVNKSNLSCFSHILCVI 75 (813)
Q Consensus 4 ~~~~-lk~k~~d~ilffr~GDFYe~f~eDA~~~a~-----~t~~~~~~~~~g~-~~-~gvp~~~~~~~~~~~yi~~L~~~ 75 (813)
.||| +|++|||||||||||||||+|||||++||+ +|.++ +..|. .| ||||||++ +.|+++||.+
T Consensus 15 ~qy~~ik~~~~d~~lffr~GdFYE~f~~DA~~~a~~l~i~lt~r~---~~~~~~~pm~GvP~~~~-----~~yl~~Lv~~ 86 (800)
T 1wb9_A 15 QQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRG---ASAGEPIPMAGIPYHAV-----ENYLAKLVNQ 86 (800)
T ss_dssp HHHHHHHHHSTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEEC---CSSSCCEEEEEEEGGGH-----HHHHHHHHHT
T ss_pred HHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCcEEeccc---cCCCCcCCccCCCHHHH-----HHHHHHHHHC
Confidence 4566 999999999999999999999999999999 34320 11111 13 89999999 9999999998
Q ss_pred c-----------------------------Cceeeeccc--------------CCeEEEEEEECCCCeEEeeecCCchhH
Q psy5289 76 S-----------------------------EDKTLETVL--------------TNTVGVAIVDLDTKKFYMGEIPDDDYY 112 (813)
Q Consensus 76 ~-----------------------------~~~~~e~~l--------------~~~vGiA~~D~stge~~~~ef~D~~~~ 112 (813)
| ||...++++ ++.+|+||+|+|||+|++++|.| +
T Consensus 87 G~kVai~eQ~e~~~~~k~~v~R~v~~v~TpGT~~~~~~l~~~~~n~l~ai~~~~~~~Gla~~D~stg~~~~~~~~d---~ 163 (800)
T 1wb9_A 87 GESVAICEQIGDPATSKGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEPAD---R 163 (800)
T ss_dssp TCCEEEEEECSCGGGCSSSCCEEEEEEECTTTCCCGGGSCTTSCCCEEEEEECSSCEEEEEECTTTCCEEEECCCS---H
T ss_pred CCeEEEEEccCCccccCCcceEEEEEEecCCcccccccccCCCCcEEEEEEEcCCEEEEEEEECCCCEEEEEEecC---H
Confidence 5 232222222 45799999999999999999987 7
Q ss_pred HHHHHHHHhcCCcEEEeCCCCCCcchhHHHHhhhcCCeeeeccCCCCCChhHHHHHHHHhhccccchhhhccccccccch
Q psy5289 113 SNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLT 192 (813)
Q Consensus 113 ~~L~s~L~~~~P~Eili~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~~~~~~~L~~l~~~~~~~~~~~~~l~~~~~~ 192 (813)
++|.++|.+++|+|||++++ ... ..+ ......++.++.+.|+...+.+.|.++++. .+..+++..+.+
T Consensus 164 ~~l~~~l~~~~P~Eil~~~~-~~~--~~l----~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~-----~~l~~~~~~~~~ 231 (800)
T 1wb9_A 164 ETMAAELQRTNPAELLYAED-FAE--MSL----IEGRRGLRRRPLWEFEIDTARQQLNLQFGT-----RDLVGFGVENAP 231 (800)
T ss_dssp HHHHHHHHHHCCSEEEEETT-CCC--GGG----TTTCSSEEEECGGGGCHHHHHHHHHHHHTC-----SCSGGGTCTTCH
T ss_pred HHHHHHHHhcCCeEEEEcCC-CCh--HHH----hhcccceEEccccccChhHHHHHHHHHhCc-----cchhhccccCcH
Confidence 89999999999999999964 211 111 111133566788999988888888888762 112334434557
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCcceeEEeccCCeEeeCHHHHhhcccccccCCCccccccchhhhhhcccCchhHHHHH
Q psy5289 193 TATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLA 272 (813)
Q Consensus 193 ~a~~A~gaLL~YL~~~~~~~~~~~~~i~~~~~~~~M~LD~~Tl~~LeI~~~~~~~~~k~~~SLf~lLn~t~T~~G~RlLr 272 (813)
.+++|+|+||.||+.++.....+..++..+..+++|.||.+|+++|||+++.+++ + +||||+++|+|+|+||+|+||
T Consensus 232 ~~~~a~gall~Yl~~~~~~~~~~~~~~~~~~~~~~m~ld~~t~~~LEl~~~~~~~--~-~gSL~~ll~~t~T~~G~RlL~ 308 (800)
T 1wb9_A 232 RGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGG--A-ENTLASVLDCTVTPMGSRMLK 308 (800)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCTTCCCCEECCGGGBCEECHHHHHHTTSSSCTTSC--S-TTSHHHHHCCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccccccEEEccCCEEEecHHHHHhccCcccCCCC--c-cccHHHHhCCCcCHHHHHHHH
Confidence 8999999999999999876544445788999999999999999999999987765 4 789999999999999999999
Q ss_pred HHhhCcCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCcHHHHHHHHhccCCCHHHHHHHHHHHhhHHHHHHHHHH
Q psy5289 273 QWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILES 352 (813)
Q Consensus 273 ~wL~~PL~d~~~I~~R~d~Ve~l~~~~~lr~~l~~~~Lk~i~Dlerll~rl~~~~~~~~d~~~l~~~l~~l~~l~~~l~~ 352 (813)
+||++|++|.++|++||++|++|.+ ++..++. .|+++||++|+++|+..+.++++|++.+++++..++.+...+..
T Consensus 309 ~wl~~Pl~d~~~I~~R~~~v~~~~~---~~~~l~~-~L~~~~Dler~l~r~~~~~~~~~dl~~l~~~l~~~~~l~~~l~~ 384 (800)
T 1wb9_A 309 RWLHMPVRDTRVLLERQQTIGALQD---FTAGLQP-VLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLET 384 (800)
T ss_dssp HHHHSCBCCHHHHHHHHHHHHHTGG---GHHHHHH-HHHTTCSHHHHHHHHHHTCCCHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred HHhhCCCCCHHHHHHHHHHHHHHHH---HHHHHHH-HhcCCccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998 8888987 99999999999999999999999999999999999999887753
Q ss_pred ----HHhhHh--HHhHHHHHHhhhhhh------------hh-----HHHHHHHHHHHH-------HHHHHHHHhCccccc
Q psy5289 353 ----LVQNVE--ASNLNTILSSLQSLK------------MM-----DRKDAVMDKMKE-------YLESTARRLNLVADK 402 (813)
Q Consensus 353 ----~~~~~~--~~~l~~~~~~~~~~~------------~~-----~~l~~l~~~~~~-------~~~~~~~~~~~~~~~ 402 (813)
.+.... +..+.++.+.+.... .+ ++||++++.+.+ +..+.++.+++ +
T Consensus 385 ~~~~~L~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~eLd~lr~~~~~~~~~l~~~~~~~~~~~~~---~ 461 (800)
T 1wb9_A 385 VDSAPVQALREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGL---D 461 (800)
T ss_dssp CCCHHHHHHHHHHCCCHHHHHHHHHHBCSSCCSCSTTCCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---T
T ss_pred cCcHHHHHHHHhcccHHHHHHHHHHHhCcCchhhhhcCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---C
Confidence 111100 011112211111100 00 677777665433 33334455676 5
Q ss_pred ceeEeecCc-ceEEEEecccccccCcCceEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Q psy5289 403 TIKLENSPQ-GFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQT 481 (813)
Q Consensus 403 ~lk~~~~~~-gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 481 (813)
.+++.|+++ ||+|+|++.....+|++|++.+++++.++|+|++++++++++.++++++...+.+++.+|.+.+..+.+.
T Consensus 462 ~l~i~~~~~~gy~i~V~~~~~~~vp~~~i~~~s~~~~~~f~tp~l~~l~~~i~~~~~~~~~~e~~i~~~l~~~~~~~~~~ 541 (800)
T 1wb9_A 462 TLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEA 541 (800)
T ss_dssp TCEEEEETTTEEEEEEEHHHHTTSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHH
T ss_pred ceEEEecCcceEEEEEeccccccCCcceEEeeeccCCCEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999 9999999988888998999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCCcceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccC
Q psy5289 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPN 561 (813)
Q Consensus 482 l~~~~~~ia~LD~l~S~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpN 561 (813)
|..+++++|+|||++|+|.+|.. ++||||++++ ++.+.|+++|||+++...+..+|+||++|+ ++|++++|||||
T Consensus 542 l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~--~~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpN 616 (800)
T 1wb9_A 542 LQQSASALAELDVLVNLAERAYT--LNYTCPTFID--KPGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPN 616 (800)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--TTCBCCEECS--SSCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--CCCcccEECC--CCCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCC
Confidence 99999999999999999999998 7899999986 467999999999998644557999999999 889999999999
Q ss_pred CCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCC
Q psy5289 562 MGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELG 641 (813)
Q Consensus 562 gsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~ 641 (813)
|||||||||+++++.+++|+|+++|+..+.+++++++++++++.|++..+.|+|+.+|.+++.++..+++|+|+||||||
T Consensus 617 GsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~ 696 (800)
T 1wb9_A 617 MGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIG 696 (800)
T ss_dssp TSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCC
T ss_pred CCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCC
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCeEEEEEEeccCCCCCcHHHHHH
Q psy5289 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCA 721 (813)
Q Consensus 642 ~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i~~~y~l~~G~~~~s~gi~vA 721 (813)
+|||+.|+.++++++++++.+..|+++|++|||++++.++++.+.+.|+||.+..++++++|+|++.+|++++|||++||
T Consensus 697 ~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~~~~~l~~~ykl~~G~~~~S~gi~vA 776 (800)
T 1wb9_A 697 RGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVA 776 (800)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEESCCSSCCHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEEcCCcEEEEEEEEECCCCCcHHHHHH
Confidence 99999999999999999998745899999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHhh
Q psy5289 722 KMAGYPEDMLEQARDLMKEYEYS 744 (813)
Q Consensus 722 ~~ag~p~~vi~~A~~~~~~le~~ 744 (813)
+++|+|++||+||++++++||..
T Consensus 777 ~~~GlP~~vi~rA~~~l~~le~~ 799 (800)
T 1wb9_A 777 ALAGVPKEVIKRARQKLRELESI 799 (800)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999864
No 4
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=1.4e-112 Score=1016.64 Aligned_cols=675 Identities=28% Similarity=0.433 Sum_probs=567.1
Q ss_pred ccccc-ccCCCCCeEEEEecCCceeehhHHHHHHHH-----hcCccccccccCC-CC-CCcceEEeccCChHHHHHHHHh
Q psy5289 3 FYLFF-FPQKSKTTIRFFNRVEFYCVHGEDAELIQR-----KSNVVYLVKTMGQ-KD-KTLETVLVNKSNLSCFSHILCV 74 (813)
Q Consensus 3 f~~~~-lk~k~~d~ilffr~GDFYe~f~eDA~~~a~-----~t~~~~~~~~~g~-~~-~gvp~~~~~~~~~~~yi~~L~~ 74 (813)
+.||| +|++|||||||||||||||+|||||++||+ +|++ +..|. .| ||||||++ +.|+++||.
T Consensus 17 ~~qy~~iK~~~~d~~l~~r~GdFYE~f~~DA~~~~~~L~i~lt~r----~~~~~~~pm~GvP~~~~-----~~y~~~Lv~ 87 (765)
T 1ewq_A 17 LQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHK----TSKDFTTPMAGIPLRAF-----EAYAERLLK 87 (765)
T ss_dssp HHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEE----ECSSCEEEEEEEEGGGH-----HHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEecCceeEEcHHHHHHHHHHhCcEEecc----CCCCCCCceecCcHHHH-----HHHHHHHHH
Confidence 35777 999999999999999999999999999999 4442 11122 14 89999999 999999999
Q ss_pred cc-----------------------------Cceeeeccc------------CCeEEEEEEECCCCeEEeeecCCchhHH
Q psy5289 75 IS-----------------------------EDKTLETVL------------TNTVGVAIVDLDTKKFYMGEIPDDDYYS 113 (813)
Q Consensus 75 ~~-----------------------------~~~~~e~~l------------~~~vGiA~~D~stge~~~~ef~D~~~~~ 113 (813)
+| ||+..++++ +..+|+||+|+|||+|++++|.|+ +
T Consensus 88 ~G~kVai~eQ~e~~~~~kg~v~R~v~~v~TpGT~~~~~~l~~~~n~l~ai~~~~~~Gla~~D~stg~~~~~~~~d~---~ 164 (765)
T 1ewq_A 88 MGFRLAVADQVEPAEEAEGLVRREVTQLLTPGTLLQESLLPREANYLAAIATGDGWGLAFLDVSTGEFKGTVLKSK---S 164 (765)
T ss_dssp TTCCEEEEEECSCGGGCSSSCCEEEEEEECGGGCCCGGGSCSSCCCEEEEEESSSEEEEEEETTTTEEEEEEESSH---H
T ss_pred CCCEEEEEecCCCcccccCceeEEEEEEEcCceecchhhcCCCCcEEEEEEeCCEEEEEEEECCCCEEEEEEecCH---H
Confidence 96 222122222 457999999999999999999874 6
Q ss_pred HHHHHHHhcCCcEEEeCCCCCCcchhHHHHhhhcCCeeeeccCCCCCChhHHHHHHHHhhccccchhhhccccccccchh
Q psy5289 114 NLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTT 193 (813)
Q Consensus 114 ~L~s~L~~~~P~Eili~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~F~~~~~~~~L~~l~~~~~~~~~~~~~l~~~~~~~ 193 (813)
+|.++|.+++|+|||++++ ...+.. .++..+.| |+. +.|.+.++ ..++ ..+.
T Consensus 165 ~l~~~l~~~~P~Eil~~~~-----~~~~~~-------~~~~~~~~-f~~----~~l~~~~~--------~~~~---~~~~ 216 (765)
T 1ewq_A 165 ALYDELFRHRPAEVLLAPE-----LLENGA-------FLDEFRKR-FPV----MLSEAPFE--------PEGE---GPLA 216 (765)
T ss_dssp HHHHHHHHHCCSEEEECHH-----HHHCHH-------HHHHHHHH-CCS----EEECCCCC--------CCSS---SCHH
T ss_pred HHHHHHHhcCCeEEEecCC-----hHHHHH-------Hhhhcccc-cCH----HHHHHHhc--------cccc---CCHH
Confidence 8999999999999999852 111111 12223344 543 11222221 0111 1267
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcceeEEeccCCeEeeCHHHHhhcccccccCCCccccccchhhhhhcccCchhHHHHHH
Q psy5289 194 ATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQ 273 (813)
Q Consensus 194 a~~A~gaLL~YL~~~~~~~~~~~~~i~~~~~~~~M~LD~~Tl~~LeI~~~~~~~~~k~~~SLf~lLn~t~T~~G~RlLr~ 273 (813)
+++|+|+|+.|++.++..... ..++..+..+++|.||.+|+++|||+++.++ ++|||+++|+|+|+||+|+|++
T Consensus 217 ~~~a~g~ll~Yl~~~~~~~~~-~~~~~~~~~~~~m~lD~~t~~~LEl~~~~~~-----~gsL~~~ld~t~T~~G~RlL~~ 290 (765)
T 1ewq_A 217 LRRARGALLAYAQRTQGGALS-LQPFRFYDPGAFMRLPEATLRALEVFEPLRG-----QDTLFSVLDETRTAPGRRLLQS 290 (765)
T ss_dssp HHHHHHHHHHHHHHHHTSCCC-CCCCEECCGGGSCBCCHHHHHHTTSSSCSSS-----CCCHHHHHCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccc-cCCcEEECCCCeEEecHHHHHhCcCccCCCc-----cchHHHHhCCCCCHHHHHHHHH
Confidence 899999999999999876544 5578889999999999999999999988653 4799999999999999999999
Q ss_pred HhhCcCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCcHHHHHHHHhccCCCHHHHHHHHHHHhhHHHHHHHHH--
Q psy5289 274 WMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILE-- 351 (813)
Q Consensus 274 wL~~PL~d~~~I~~R~d~Ve~l~~~~~lr~~l~~~~Lk~i~Dlerll~rl~~~~~~~~d~~~l~~~l~~l~~l~~~l~-- 351 (813)
||++|++|.++|++||++|++|.+++.++..++. .|+++||++|++.|+..+.++++|++.+++++..+|.+...+.
T Consensus 291 wl~~Pl~d~~~I~~R~~~V~~l~~~~~~~~~l~~-~L~~~~Dler~l~r~~~~~~~~~dl~~l~~~l~~~~~l~~~l~l~ 369 (765)
T 1ewq_A 291 WLRHPLLDRGPLEARLDRVEGFVREGALREGVRR-LLYRLADLERLATRLELGRASPKDLGALRRSLQILPELRALLGEE 369 (765)
T ss_dssp HHHSCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH-HHTTCCCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HhhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHH-HHhcCCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997 9999999999999999999999999999999999999887763
Q ss_pred HHHhhHhHHhHHHHHH-hhhhh--------hhh-----HHHHHHHHHHHH-------HHHHHHHHhCcccccceeEeecC
Q psy5289 352 SLVQNVEASNLNTILS-SLQSL--------KMM-----DRKDAVMDKMKE-------YLESTARRLNLVADKTIKLENSP 410 (813)
Q Consensus 352 ~~~~~~~~~~l~~~~~-~~~~~--------~~~-----~~l~~l~~~~~~-------~~~~~~~~~~~~~~~~lk~~~~~ 410 (813)
..+. . ...+.+.+. .+..- ..+ ++||++++.+.+ ...+..+.+++ +.+++.|++
T Consensus 370 ~~l~-~-~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~---~~l~i~~~~ 444 (765)
T 1ewq_A 370 VGLP-D-LSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGI---PTLKVGYNA 444 (765)
T ss_dssp SCCC-C-CHHHHHHHHHHBCSSCCSCTTSSCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---TTCEEEEET
T ss_pred hccc-c-HHHHHHHHHHHhcccchhhhccCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CceEEEecc
Confidence 0000 0 111221111 11110 001 567777655433 33334455676 578999999
Q ss_pred c-ceEEEEecccccccCcCceEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy5289 411 Q-GFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVL 489 (813)
Q Consensus 411 ~-gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~l~~~~~~i 489 (813)
+ ||+|+|++.....+|.+|++.++.++.++|+|++++++++++.++.+++...+.+++.+|.+.+..+.+.|+.+.+++
T Consensus 445 ~~gy~i~v~~~~~~~vp~~~i~~~s~~~~~rf~tp~l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~l 524 (765)
T 1ewq_A 445 VFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARIL 524 (765)
T ss_dssp TTEEEEEEEGGGGGGSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred ceeEEEEeehHhhhcCCcceEEEEeccCCcEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 999999998888899889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcccCCCcceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHH
Q psy5289 490 AQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYI 569 (813)
Q Consensus 490 a~LD~l~S~A~~a~~~~~~~~rP~~~~~~~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTll 569 (813)
|+||+++|+|.+|.. ++||||++ + +.+.++++|||+++. +..+|+||++|+ |++++|||||||||||||
T Consensus 525 a~LD~l~s~a~~a~~--~~~~~P~~-~---~~i~i~~~rHP~le~--~~~~vl~disl~---g~i~~I~GpNGsGKSTlL 593 (765)
T 1ewq_A 525 AELDVYAALAEVAVR--YGYVRPRF-G---DRLQIRAGRHPVVER--RTEFVPNDLEMA---HELVLITGPNMAGKSTFL 593 (765)
T ss_dssp HHHHHHHHHHHHHHH--HTCBCCEE-S---SSEEEEEECCTTGGG--TSCCCCEEEEES---SCEEEEESCSSSSHHHHH
T ss_pred HHHHHHHhhHHHHHh--CCceeecc-C---CcEEEEEeECceEcc--CCceEeeeccCC---CcEEEEECCCCCChHHHH
Confidence 999999999999988 78999999 2 569999999999975 457999999998 799999999999999999
Q ss_pred hhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhH
Q psy5289 570 RSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 570 r~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~ 649 (813)
|+++++..++|.|+++|+..+.+++++++++++++.|++..+.|+|+.+|.+++.++..+++|+|+||||||+||++.|+
T Consensus 594 r~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~ 673 (765)
T 1ewq_A 594 RQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDG 673 (765)
T ss_dssp HHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHH
T ss_pred HHHHhhhhhcccCceeehhccceeeHHHhhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCH
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCeEEEEEEeccCCCCCcHHHHHHHHCCCCHH
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPED 729 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i~~~y~l~~G~~~~s~gi~vA~~ag~p~~ 729 (813)
.++++++++++.+ .|+++|++||++++..++ .+.+.|+||.+..++++++|+|++.+|++++|||++||+++|+|++
T Consensus 674 ~~~~~~i~~~L~~-~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~~~~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~ 750 (765)
T 1ewq_A 674 VAIATAVAEALHE-RRAYTLFATHYFELTALG--LPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKE 750 (765)
T ss_dssp HHHHHHHHHHHHH-HTCEEEEECCCHHHHTCC--CTTEEEEEEEEECCSSSCEEEEEEEESCCSSCCHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhh--hhcceEEEEEEEEcCCeEEEEEEEEECCCCCchHHHHHHHcCCCHH
Confidence 9998999999987 699999999999999877 7899999999988888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy5289 730 MLEQARDLMKEYEY 743 (813)
Q Consensus 730 vi~~A~~~~~~le~ 743 (813)
||+||++++++||+
T Consensus 751 VI~rA~~~l~~le~ 764 (765)
T 1ewq_A 751 VVARARALLQAMAA 764 (765)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999874
No 5
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=1.2e-111 Score=1036.97 Aligned_cols=727 Identities=24% Similarity=0.386 Sum_probs=554.4
Q ss_pred ccccc-ccCCCCCeEEEEecCCceeehhHHHHHHHHhcCccccccccCCCC-CCcceEEeccCChHHHHHHHHhcc----
Q psy5289 3 FYLFF-FPQKSKTTIRFFNRVEFYCVHGEDAELIQRKSNVVYLVKTMGQKD-KTLETVLVNKSNLSCFSHILCVIS---- 76 (813)
Q Consensus 3 f~~~~-lk~k~~d~ilffr~GDFYe~f~eDA~~~a~~t~~~~~~~~~g~~~-~gvp~~~~~~~~~~~yi~~L~~~~---- 76 (813)
+.||| +|++||||||||||||||||||+||+++|+..+. .+. .|..| ||||||++ +.|+++||.+|
T Consensus 72 m~Qy~~iK~~~~d~llffr~GdFYElf~~DA~~~a~~L~i--~lt-~~~~pmaGvP~ha~-----~~yl~~Lv~~GykVa 143 (1022)
T 2o8b_B 72 MRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGVSELGL--VFM-KGNWAHSGFPEIAF-----GRYSDSLVQKGYKVA 143 (1022)
T ss_dssp HHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHCC--CCC-SSSSCEEEEEGGGH-----HHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhCCCEEEEEECCCEEEEehhhHHHHHHhcCe--EEe-cCCCCCCCCchhHH-----HHHHHHHHHCCCeEE
Confidence 35778 9999999999999999999999999999992221 121 13345 89999999 99999999885
Q ss_pred -----Cce--------------------e------------eecc----c------------C---------CeEEEEEE
Q psy5289 77 -----EDK--------------------T------------LETV----L------------T---------NTVGVAIV 94 (813)
Q Consensus 77 -----~~~--------------------~------------~e~~----l------------~---------~~vGiA~~ 94 (813)
+++ . +++. + . ..+|+||+
T Consensus 144 i~eQ~e~p~~~~~r~~~~~~~~k~~~~v~Rev~rvvTpGT~~d~~~~~~l~~~~~n~l~ai~~~~~~~~~~~~~~Gla~~ 223 (1022)
T 2o8b_B 144 RVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKEEDSSGHTRAYGVCFV 223 (1022)
T ss_dssp EEEECSCHHHHHHHHHTCSSCCSGGGSCCEEEEEEECTTSCCCCTTSCCCSCSSCCEEEEEEEEECSCC-CCEEEEEEEE
T ss_pred EEeCCCCchhhhhhhhhcccccccCCceeeeEEEEECCCeeecccccccccCCCCcEEEEEEEccccccCCCcEEEEEEE
Confidence 111 0 1221 2 1 16999999
Q ss_pred ECCCCeEEeeecCCchhHHHHHHHHHhcCCcEEEeCCCCCCcchhHHHHhhhc-CCeeeec--cCCCCCC-hhHHHHHHH
Q psy5289 95 DLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDR-NKVCMTG--RKKNEFS-EEDLMQDVN 170 (813)
Q Consensus 95 D~stge~~~~ef~D~~~~~~L~s~L~~~~P~Eili~~~~~~~~~~~l~~~l~~-~~~~i~~--~~~~~F~-~~~~~~~L~ 170 (813)
|+|||+|++++|.|+..+++|+++|.+++|+|||++.+..+. ....++.. ....++. .+...|+ .....+.+.
T Consensus 224 D~sTGe~~~~e~~d~~~~~~L~~~L~~~~P~Eil~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 300 (1022)
T 2o8b_B 224 DTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSK---ETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLL 300 (1022)
T ss_dssp CTTTCCEEEEEEEECSSCHHHHHHHHHSCEEEEEEETTTCCH---HHHHHHTTTTTTSEEEEECBTTTBCCHHHHHHHHH
T ss_pred ECCCCEEEEEEecCchHHHHHHHHHHhcCCcEEEecCCccch---HHHHHHHhhhhhhhhhhcccchhhcchhhHHhhhh
Confidence 999999999999988889999999999999999999631111 22222221 1111222 2444443 322222222
Q ss_pred --Hhhccccch--------h-----hhcccccc---ccchhHHHHHHHHHHHHHHhcCC------CCCCccee-------
Q psy5289 171 --RLVRFDDSE--------L-----KNARLLPE---MCLTTATHCLRSLINYLELMNNE------DNMNQFSI------- 219 (813)
Q Consensus 171 --~l~~~~~~~--------~-----~~~~~l~~---~~~~~a~~A~gaLL~YL~~~~~~------~~~~~~~i------- 219 (813)
..|+...+. . .+..++.. .+.+.+++|+|+||.||+.++.. .++.++..
T Consensus 301 ~~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~A~gall~Yl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1022)
T 2o8b_B 301 EEEYFREKLSDGIGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVS 380 (1022)
T ss_dssp HTTTTSSSSCCCC-CCCCHHHHHTEECCSTTCSEECGGGHHHHHHHHHHHHHHHHHTCHHHHHTTCCEEECCCGGGGTCC
T ss_pred hhhhcccccccccchhhHHHHHHhhcchhhcccccccccHHHHHHHHHHHHHHHHhCcchhhhccccccccccccccccc
Confidence 222210000 0 00111221 23567899999999999988631 22323211
Q ss_pred ------EEeccCCeEeeCHHHHhhcccccccCCCccccccchhhhhhcccCchhHHHHHHHhhCcCCCHHHHHHHHHHHH
Q psy5289 220 ------HSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVN 293 (813)
Q Consensus 220 ------~~~~~~~~M~LD~~Tl~~LeI~~~~~~~~~k~~~SLf~lLn~t~T~~G~RlLr~wL~~PL~d~~~I~~R~d~Ve 293 (813)
..+..+++|.||++|++||||++|.++++ + +||||++||+|+||||+||||+||++||+|+++|++|||+|+
T Consensus 381 ~~~~~~~~~~~~~~m~LD~~T~~nLEl~~~~~~g~-~-~gSLl~~Ld~t~T~mG~RLLr~WL~~PL~d~~~I~~RldaVe 458 (1022)
T 2o8b_B 381 TTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGS-T-EGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIE 458 (1022)
T ss_dssp ---------CCCCBCBCCHHHHHHTTCSSCCSSSS-C-CCSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHH
T ss_pred cccccccccCCCCeEEeCHHHHHhhcCCccCCCCC-C-CCcHHHHhCcCCCchhHHHHHHHHhCccCCHHHHHHHHHHHH
Confidence 12577899999999999999999987664 4 789999999999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHhcCCCcHHHHHHHHhc-cCC-------------------C---HHHHHHHHHHHhhHHHHHHHH
Q psy5289 294 ILVNNTEARMNLHEYALRGLPDMQSLAMRIGR-KKA-------------------G---LKDCYRVYEGVSQLPKLISIL 350 (813)
Q Consensus 294 ~l~~~~~lr~~l~~~~Lk~i~Dlerll~rl~~-~~~-------------------~---~~d~~~l~~~l~~l~~l~~~l 350 (813)
+|++++.+++.++. .|+++||+||+++|+.. +++ + ++|+..+..++..++.+...+
T Consensus 459 ~l~~~~~~~~~l~~-~L~~i~DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~i~~~l 537 (1022)
T 2o8b_B 459 DLMVVPDKISEVVE-LLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIM 537 (1022)
T ss_dssp HHHTCHHHHHHHHH-HHTTCCCHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHH-HHhcCccHHHHHHHHHhcCCcccccccchhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997 99999999999999987 331 2 355566655567777777666
Q ss_pred HH--------HHhhHh----------HHhHHHHHHhhhh------------hh--h-h-HHHHHHHHHHHHHHHHHHHH-
Q psy5289 351 ES--------LVQNVE----------ASNLNTILSSLQS------------LK--M-M-DRKDAVMDKMKEYLESTARR- 395 (813)
Q Consensus 351 ~~--------~~~~~~----------~~~l~~~~~~~~~------------~~--~-~-~~l~~l~~~~~~~~~~~~~~- 395 (813)
.. ++.... +..+.+....+.. +. . . +++|++++.+.+...++.+.
T Consensus 538 ~~~~~~~~s~lL~~~~~~~~~~~~~~~~~l~~~~~~~~~~id~~~~~~~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~ 617 (1022)
T 2o8b_B 538 EEVADGFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYL 617 (1022)
T ss_dssp HHHHTTCCCHHHHHHTSBTTTSSSSCBCCCHHHHHHHHTTSCHHHHHHSCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCcHHHHHHHHhhccccccchHHHHHHHHHHHHHhCchhhhcCCcEeeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 42 111110 0111111111100 00 0 0 67777777666655555432
Q ss_pred ------hCcccccceeEeecCc-ceEEEEecccccc-cCcCceEeeeecceEEEeChhHHHHHHHHHHHHHHHHHHHHHH
Q psy5289 396 ------LNLVADKTIKLENSPQ-GFAYRITMKLNNS-IDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSI 467 (813)
Q Consensus 396 ------~~~~~~~~lk~~~~~~-gy~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~i 467 (813)
+++ +++++..... +|+|+|+...... +|+.|+..+++++.++|+|+++++++.++..+++++...+.++
T Consensus 618 ~~~~~~~~~---~~l~~~~~~~~~y~i~v~~~~~~~~vp~~~~~~~t~~~~~rf~t~el~~~~~~l~~~~~~~~~~~~~l 694 (1022)
T 2o8b_B 618 EKQRNRIGC---RTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDC 694 (1022)
T ss_dssp TSSGGGSSC---SCCEEECCGGGCCEEEECTTTTSSCCCC-CEEEEETTEEEECCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC---CceeEEEecCceEEEEEehhhhcccCCCceEEeeeccCccEEechHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343 3456555555 8999999877666 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccCC--CcceEEEEccccCeeEecC-Cceeeccc
Q psy5289 468 VEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPM--GTGSLVLNQCRHPIVELQG-GVSYIPND 544 (813)
Q Consensus 468 ~~~l~~~~~~~~~~l~~~~~~ia~LD~l~S~A~~a~~~~~~~~rP~~~~~--~~~~l~i~~~rhp~~e~~~-~~~~i~n~ 544 (813)
+.++.+.+.++.+.|..+++++|+|||++|+|.+|.....+||||++.+. +++.|.++++|||+++..- +..+||||
T Consensus 695 ~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~~P~~~~~~~~~~~l~i~~~rHP~l~~~~~~~~~v~nd 774 (1022)
T 2o8b_B 695 MRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPND 774 (1022)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCEECCEECCTTTSCCCEEEEEECCCC------CCCCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCccCCccccCCCCCceEEEEeccccEEEEEecCCceEeee
Confidence 99999999999999999999999999999999999843488999999732 2457999999999998543 45799999
Q ss_pred cccccCC-------ceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhHH
Q psy5289 545 VYFKSGE-------VSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMM 617 (813)
Q Consensus 545 v~l~~~~-------g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~ 617 (813)
++|+.+. |++++||||||||||||||++|++.+++|+|+|||+..+.++++|.|++++|+.|++..+.|+|++
T Consensus 775 i~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~ 854 (1022)
T 2o8b_B 775 ILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFV 854 (1022)
T ss_dssp EEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHH
T ss_pred eeeccccccccCCCCcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHH
Confidence 9999876 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEE-
Q psy5289 618 EMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALE- 696 (813)
Q Consensus 618 e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~- 696 (813)
||.+++.++..+++|+||||||||+|||+.++.++++++++++.+..|+++||+|||++++......+.+.+|||.+..
T Consensus 855 em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~~~~~ 934 (1022)
T 2o8b_B 855 ELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVE 934 (1022)
T ss_dssp HHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEEEEEEEC--
T ss_pred HHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeecCeEEEEEe
Confidence 9999999999999999999999999999999999999999999874499999999999999876666788899998543
Q ss_pred ------ECCeEEEEEEeccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHhhhc
Q psy5289 697 ------QEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLD 746 (813)
Q Consensus 697 ------~~~~i~~~y~l~~G~~~~s~gi~vA~~ag~p~~vi~~A~~~~~~le~~~~ 746 (813)
+++.++|+|++.+|++++|||++||+++|+|++||+||++++++||....
T Consensus 935 ~~~~~~~~~~l~~ly~l~~G~~~~Sygi~vA~l~Glp~~vi~rA~~~~~~le~~~~ 990 (1022)
T 2o8b_B 935 NECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQ 990 (1022)
T ss_dssp -----------CEEEEEESSCCCCCHHHHHHHHTTCCHHHHHHHHHHHHHTTSSTT
T ss_pred cCcccCCCCceEEEeeecCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 24679999999999999999999999999999999999999999997653
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.84 E-value=5.8e-21 Score=198.17 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=118.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------h-hccccccCCcc---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------A-QIGCFVPCDSA--- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------a-q~g~~vpa~~~--- 590 (813)
..+.++++|++.+|++++|+||||||||||||+++++... . ++| ++|....
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~-~v~Q~~~l~~ 96 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIG-FVFQQFNLIP 96 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEE-EECTTCCCCT
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEE-EEecCCccCC
Confidence 3578899999999999999999999999999999654210 0 122 3333221
Q ss_pred chhH------------------------HHHHHHhcCCchhH-hhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q psy5289 591 TISV------------------------VDQIFTRVGAADSQ-YRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGT 644 (813)
Q Consensus 591 ~~~~------------------------~d~i~~~~~~~d~~-~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gt 644 (813)
.+++ +..++..+++.+.. ....+++|++++|+..+++. +.+|+++||||||+|+
T Consensus 97 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~L 176 (235)
T 3tif_A 97 LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWAL 176 (235)
T ss_dssp TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 1111 22355666766544 66778999998887766665 6999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCe
Q psy5289 645 STFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDN 700 (813)
Q Consensus 645 d~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~ 700 (813)
|+.....+.. ++..+.++.|.++|++|||.+++.+++++..+.+|++.......+
T Consensus 177 D~~~~~~i~~-~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 177 DSKTGEKIMQ-LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp CHHHHHHHHH-HHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred CHHHHHHHHH-HHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 9988877754 555565434899999999999888899888888888876655443
No 7
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.83 E-value=1.9e-20 Score=192.87 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=117.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------------hhccccccCCcc---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------------AQIGCFVPCDSA--- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------------aq~g~~vpa~~~--- 590 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .++ .++|....
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i-~~v~q~~~l~~ 95 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKL-GFVFQFHYLIP 95 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHE-EEECSSCCCCT
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcE-EEEecCcccCC
Confidence 4678899999999999999999999999999999654210 112 23443321
Q ss_pred chh---------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q psy5289 591 TIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 591 ~~~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d 648 (813)
..+ .++.++..+|+.+......+++|++++|...+++. +.+|+++||||||+|+|+..
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (224)
T 2pcj_A 96 ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN 175 (224)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHH
T ss_pred CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHH
Confidence 111 12345667777777777788999999887777665 68999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEE
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~ 696 (813)
...+.. ++..+.+ .|.++|++||+.+...+++++..+.+|++....
T Consensus 176 ~~~~~~-~l~~l~~-~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g 221 (224)
T 2pcj_A 176 TKRVMD-IFLKINE-GGTSIVMVTHERELAELTHRTLEMKDGKVVGEI 221 (224)
T ss_dssp HHHHHH-HHHHHHH-TTCEEEEECSCHHHHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHH-HHHHHHH-CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEe
Confidence 777644 5566665 389999999998887888887778888776543
No 8
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.83 E-value=1.9e-20 Score=197.63 Aligned_cols=171 Identities=15% Similarity=0.130 Sum_probs=124.8
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hhh
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LAQ 580 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------laq 580 (813)
.+++++....+ +...+.++++|++.+|++++|+||||||||||+|+++++.. .++
T Consensus 11 ~l~~~~l~~~~-----~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 85 (266)
T 4g1u_C 11 LLEASHLHYHV-----QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85 (266)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHH
T ss_pred eEEEEeEEEEe-----CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhh
Confidence 46666554332 33578899999999999999999999999999999975421 011
Q ss_pred ccccccCCcc---c-------------------hhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhC-C------C
Q psy5289 581 IGCFVPCDSA---T-------------------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T------E 631 (813)
Q Consensus 581 ~g~~vpa~~~---~-------------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~-~------~ 631 (813)
...++|.... . ...++.++.++++.+......+++|++++|+..+++.. . +
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp HEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred eEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 1122322210 0 11234567788887777788899999999887777764 5 9
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 632 ~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
|+++||||||+|+|+.....+.. ++..+.++.++++|++|||.+.+ .+++++..+.+|++.....
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~-~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~ 231 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLR-LLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGT 231 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHH-HHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred CCEEEEeCccccCCHHHHHHHHH-HHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999988777754 55556553467999999998776 4889888888887765543
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.82 E-value=9.4e-20 Score=191.22 Aligned_cols=153 Identities=19% Similarity=0.235 Sum_probs=114.1
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc---chh--
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA---TIS-- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~---~~~-- 593 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .++ .++|.... .++
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i-~~v~q~~~l~~~ltv~ 106 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI-SYLPEEAGAYRNMQGI 106 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE-EEECTTCCCCTTSBHH
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE-EEEcCCCCCCCCCcHH
Confidence 5688999999999999999999999999999999754210 112 23443221 111
Q ss_pred -------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHH
Q psy5289 594 -------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMA 653 (813)
Q Consensus 594 -------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~ 653 (813)
.++.++..+|+.+......+++|++|+|...+++. +.+|+++|||||++|+|+.....+.
T Consensus 107 enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~ 186 (256)
T 1vpl_A 107 EYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 186 (256)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHH
Confidence 12345667788777778888999999887766665 6999999999999999998877774
Q ss_pred HHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEE
Q psy5289 654 CSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSA 694 (813)
Q Consensus 654 ~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~ 694 (813)
. ++..+.+ .|.++|++||+.+.+. +++++..+.+|++..
T Consensus 187 ~-~l~~l~~-~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~ 226 (256)
T 1vpl_A 187 K-ILKQASQ-EGLTILVSSHNMLEVEFLCDRIALIHNGTIVE 226 (256)
T ss_dssp H-HHHHHHH-TTCEEEEEECCHHHHTTTCSEEEEEETTEEEE
T ss_pred H-HHHHHHh-CCCEEEEEcCCHHHHHHHCCEEEEEECCEEEE
Confidence 4 5555665 4899999999987764 678776676666644
No 10
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.81 E-value=1.2e-19 Score=198.18 Aligned_cols=158 Identities=13% Similarity=0.164 Sum_probs=121.4
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-----------------------hhccccccCCcc---c
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------------AQIGCFVPCDSA---T 591 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-----------------------aq~g~~vpa~~~---~ 591 (813)
...+.++++|++.+|++++|+||||||||||||+|+++... .++| +|+...+ .
T Consensus 16 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig-~vfQ~~~l~p~ 94 (359)
T 3fvq_A 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG-YLVQEGVLFPH 94 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE-EECTTCCCCTT
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE-EEeCCCcCCCC
Confidence 35688899999999999999999999999999999754210 0111 2332221 1
Q ss_pred hh---------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 592 IS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 592 ~~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
++ .++.++..+++.+...+..+++|++++|+..+++. +.+|+++|||||++|+|+...
T Consensus 95 ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r 174 (359)
T 3fvq_A 95 LTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLR 174 (359)
T ss_dssp SCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred CCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 11 23456778888888888889999999887776665 689999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
..+...+.+...+ .|.++|++|||.+.+ .++|++..+.+|++.....
T Consensus 175 ~~l~~~l~~~~~~-~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~ 222 (359)
T 3fvq_A 175 RQIREDMIAALRA-NGKSAVFVSHDREEALQYADRIAVMKQGRILQTAS 222 (359)
T ss_dssp HHHHHHHHHHHHH-TTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeC
Confidence 8776555555554 699999999997655 6899988888998876654
No 11
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.81 E-value=4.8e-20 Score=195.23 Aligned_cols=170 Identities=17% Similarity=0.132 Sum_probs=122.2
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh----------------------h
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF----------------------L 578 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~----------------------l 578 (813)
.|++++...-+ .+...+.++++|++.+|++++|+||||||||||+|+++++.. .
T Consensus 7 ~l~i~~ls~~y----~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~ 82 (275)
T 3gfo_A 7 ILKVEELNYNY----SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKL 82 (275)
T ss_dssp EEEEEEEEEEC----TTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHH
T ss_pred EEEEEEEEEEE----CCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHH
Confidence 45666543222 122358899999999999999999999999999999965421 0
Q ss_pred hhccccccCCc----cchhH---------------------HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCC
Q psy5289 579 AQIGCFVPCDS----ATISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTEN 632 (813)
Q Consensus 579 aq~g~~vpa~~----~~~~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~ 632 (813)
.+.-.++|... ...++ ++.++.++|+.+......+++|++++|+..+++. +.+|
T Consensus 83 ~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp HHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 11112444321 01111 2346677888777778889999999887776665 7999
Q ss_pred cEEEEeCCCCCCChhhHHHHHHHHHHHHH-hcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEE
Q psy5289 633 SLVIIDELGRGTSTFDGFGMACSIARELA-SHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 633 ~LlllDEp~~Gtd~~d~~~i~~~i~~~l~-~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~ 696 (813)
+++||||||+|+|+.....+.. ++..+. + .|.++|++||+.+.+ .+++++..+.+|++....
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~-~l~~l~~~-~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g 226 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMK-LLVEMQKE-LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQG 226 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHH-HHHHHHHH-HCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEE
T ss_pred CEEEEECccccCCHHHHHHHHH-HHHHHHhh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999988777744 566665 4 489999999998766 578887777777765443
No 12
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.81 E-value=1.2e-19 Score=190.94 Aligned_cols=166 Identities=14% Similarity=0.150 Sum_probs=120.0
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------------------
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------------------- 578 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------------------- 578 (813)
.+++++...-+ +...+.++++|++.+|++++|+||||||||||||+++++...
T Consensus 24 ~l~i~~l~~~y-----~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 98 (263)
T 2olj_A 24 MIDVHQLKKSF-----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98 (263)
T ss_dssp SEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHH
T ss_pred eEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHH
Confidence 46666654322 235688999999999999999999999999999999654210
Q ss_pred -hhccccccCCcc---chh----------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCC
Q psy5289 579 -AQIGCFVPCDSA---TIS----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTE 631 (813)
Q Consensus 579 -aq~g~~vpa~~~---~~~----------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~ 631 (813)
.++ .++|.... .++ .++.++..+++.+......+++|++++|...+++. +.+
T Consensus 99 ~~~i-~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~ 177 (263)
T 2olj_A 99 REEV-GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAME 177 (263)
T ss_dssp HHHE-EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hCcE-EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCC
Confidence 012 23443321 111 12345667777777777788999999887766665 689
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 632 ~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
|+++||||||+|+|+.....+.. ++..+.+ .|.++|++||+.+.+ .+++++..+.+|++..
T Consensus 178 p~lllLDEPts~LD~~~~~~~~~-~l~~l~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 239 (263)
T 2olj_A 178 PKIMLFDEPTSALDPEMVGEVLS-VMKQLAN-EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE 239 (263)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHH-HHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCEEEEeCCcccCCHHHHHHHHH-HHHHHHh-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999988777644 5566665 489999999998776 4788877777776654
No 13
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.81 E-value=7.7e-20 Score=199.67 Aligned_cols=174 Identities=14% Similarity=0.147 Sum_probs=128.0
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh----------------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF---------------------- 577 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~---------------------- 577 (813)
..|++++...-+-. ..+...+.++++|++.+|++++|+||||||||||+|+++++..
T Consensus 23 ~mi~v~~ls~~y~~-~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 23 HMIKLSNITKVFHQ-GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp CCEEEEEEEEEEEC-SSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred ceEEEEeEEEEeCC-CCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 45777765433311 0112458999999999999999999999999999999965421
Q ss_pred --hhhccccccCCcc---chh---------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CC
Q psy5289 578 --LAQIGCFVPCDSA---TIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CT 630 (813)
Q Consensus 578 --laq~g~~vpa~~~---~~~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~ 630 (813)
..++| ++|.... ..+ .+..++..+|+.+......+++|++|+|+..|+++ +.
T Consensus 102 ~~r~~Ig-~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~ 180 (366)
T 3tui_C 102 KARRQIG-MIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 180 (366)
T ss_dssp HHHTTEE-EECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred HHhCcEE-EEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 01122 3443321 111 13456778888888888889999999988877776 68
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEE
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~ 696 (813)
+|+++|+||||+|+|+.....+.. ++..+.++.|.|+|++||+++.+ .+++++..+.+|++....
T Consensus 181 ~P~lLLlDEPTs~LD~~~~~~i~~-lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g 246 (366)
T 3tui_C 181 NPKVLLCDQATSALDPATTRSILE-LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQD 246 (366)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECC
T ss_pred CCCEEEEECCCccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999988877744 66666654699999999998776 579988888888776543
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.80 E-value=1.7e-19 Score=190.24 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=114.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh------------h----------------------hhcccc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF------------L----------------------AQIGCF 584 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~------------l----------------------aq~g~~ 584 (813)
..+.++++|++.+|++++|+||||||||||||+++++.. + .++ .+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~ 97 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL-TM 97 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE-EE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcce-EE
Confidence 467889999999999999999999999999999965421 0 012 23
Q ss_pred ccCCcc---chh----------------------HHHHHHHhcCCchh-HhhccchhHHHHHHHHHHHHh-CCCCcEEEE
Q psy5289 585 VPCDSA---TIS----------------------VVDQIFTRVGAADS-QYRGISTFMMEMKETATVIKK-CTENSLVII 637 (813)
Q Consensus 585 vpa~~~---~~~----------------------~~d~i~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~-~~~~~Llll 637 (813)
+|.... .++ .++.++.++|+.+. .....+++|++++|...+++. +.+|+++||
T Consensus 98 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL 177 (262)
T 1b0u_A 98 VFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLF 177 (262)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 443211 001 12346677888777 778889999999887776665 689999999
Q ss_pred eCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 638 DELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 638 DEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
||||+|+|+.....+.. ++..+.+ .|.++|++||+.+.+ .+++++..+.+|++..
T Consensus 178 DEPts~LD~~~~~~~~~-~l~~l~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 178 DEPTSALDPELVGEVLR-IMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp ESTTTTSCHHHHHHHHH-HHHHHHH-TTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred eCCCccCCHHHHHHHHH-HHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999988777754 5566666 489999999998766 4788877777776654
No 15
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.80 E-value=1.1e-19 Score=189.14 Aligned_cols=155 Identities=12% Similarity=0.036 Sum_probs=111.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------------hhccccccCCcc---chh-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------------------AQIGCFVPCDSA---TIS- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------------------aq~g~~vpa~~~---~~~- 593 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.++|.... .++
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv 98 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTV 98 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBH
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcH
Confidence 4688899999999999999999999999999999654210 010123443211 111
Q ss_pred -------------------HHHHHHHhc-CCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHH
Q psy5289 594 -------------------VVDQIFTRV-GAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGM 652 (813)
Q Consensus 594 -------------------~~d~i~~~~-~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i 652 (813)
.++.++.++ ++.+......+++|++++|...+++. +.+|+++||||||+|+|+.....+
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l 178 (240)
T 1ji0_A 99 YENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178 (240)
T ss_dssp HHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHH
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 123445555 36555566678899888887666655 699999999999999999887777
Q ss_pred HHHHHHHHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEEE
Q psy5289 653 ACSIARELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 653 ~~~i~~~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~~ 695 (813)
.. ++..+.+ .|.++|++||+.+. ..+++++..+.+|++...
T Consensus 179 ~~-~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 220 (240)
T 1ji0_A 179 FE-VIQKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQIVLE 220 (240)
T ss_dssp HH-HHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HH-HHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 54 5555665 58999999999854 568888777777766543
No 16
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.80 E-value=1.9e-19 Score=189.30 Aligned_cols=153 Identities=17% Similarity=0.067 Sum_probs=113.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh----------------------hhhccccccCCcc---c--
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF----------------------LAQIGCFVPCDSA---T-- 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~----------------------laq~g~~vpa~~~---~-- 591 (813)
..+.++++|++.+|++++|+||||||||||||+++++.. ..++| ++|.... .
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~l~~~~t 98 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV-RTFQTPQPLKEMT 98 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE-ECCCCCGGGGGSB
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE-EEccCCccCCCCc
Confidence 468899999999999999999999999999999964321 00122 2332210 0
Q ss_pred --------------------------------hhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEe
Q psy5289 592 --------------------------------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIID 638 (813)
Q Consensus 592 --------------------------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllD 638 (813)
...++.++..+|+.+......+++|++++|...+++. +.+|+++|||
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLD 178 (257)
T 1g6h_A 99 VLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD 178 (257)
T ss_dssp HHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred HHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 0113446677777777777888999999887776665 6899999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 639 ELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 639 Ep~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
|||+|+|+.....+.. ++..+.+ .|.++|++||+.+.+ .+++++..+.+|++..
T Consensus 179 EPts~LD~~~~~~l~~-~l~~l~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 179 EPIAGVAPGLAHDIFN-HVLELKA-KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp STTTTCCHHHHHHHHH-HHHHHHH-TTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCccCCCHHHHHHHHH-HHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999988777754 5556665 489999999997665 5788777677766644
No 17
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.80 E-value=1.8e-19 Score=188.83 Aligned_cols=151 Identities=16% Similarity=0.145 Sum_probs=113.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------hhccccccCCcc---c----------------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------AQIGCFVPCDSA---T---------------- 591 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------aq~g~~vpa~~~---~---------------- 591 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .++ .++|.... .
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i-~~v~q~~~~~~~~tv~enl~~~~~~~~~ 96 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSI-GFVPQFFSSPFAYSVLDIVLMGRSTHIN 96 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCE-EEECSCCCCSSCCBHHHHHHGGGGGGSC
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccE-EEEcCCCccCCCCCHHHHHHHhhhhhcc
Confidence 4678899999999999999999999999999999765311 111 12322110 0
Q ss_pred ---------hhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHH
Q psy5289 592 ---------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELA 661 (813)
Q Consensus 592 ---------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~ 661 (813)
...++.++..+|+.+......+++|++++|...+++. +.+|+++|||||++|+|+.....+.. ++..+.
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l~ 175 (253)
T 2nq2_C 97 TFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLS-LLIDLA 175 (253)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHH-HHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 0123456777888777777888999998887766665 68999999999999999988777755 555555
Q ss_pred hcCCCEEEEEcCChHHH-hhcCCCCceEeeE
Q psy5289 662 SHRQPFTLFATHFHEIA-LLSRVIPTFRNVQ 691 (813)
Q Consensus 662 ~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~ 691 (813)
++.|.++|++||+.+.+ .+++++..+.+|+
T Consensus 176 ~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 176 QSQNMTVVFTTHQPNQVVAIANKTLLLNKQN 206 (253)
T ss_dssp HTSCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HhcCCEEEEEecCHHHHHHhCCEEEEEeCCe
Confidence 53489999999998776 6888877677766
No 18
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.79 E-value=3.1e-19 Score=196.09 Aligned_cols=158 Identities=20% Similarity=0.175 Sum_probs=120.7
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhccccccCCcc---chh--
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQIGCFVPCDSA---TIS-- 593 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~g~~vpa~~~---~~~-- 593 (813)
...+.++++|++.+|++++|+||||||||||||+|+++... ..+| +|+...+ .++
T Consensus 15 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig-~VfQ~~~l~p~ltV~ 93 (381)
T 3rlf_A 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVG-MVFQSYALYPHLSVA 93 (381)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEE-EECTTCCCCTTSCHH
T ss_pred CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEE-EEecCCcCCCCCCHH
Confidence 35678899999999999999999999999999999765311 0111 2332221 111
Q ss_pred -------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHH
Q psy5289 594 -------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMA 653 (813)
Q Consensus 594 -------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~ 653 (813)
.++.++..+++.+...+..+++|++++|+..+++. +.+|+++|||||++|+|+.....+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~ 173 (381)
T 3rlf_A 94 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 173 (381)
T ss_dssp HHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH
Confidence 13456778888888888899999999987777665 5899999999999999998877775
Q ss_pred HHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 654 CSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 654 ~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
. ++..+.++.|.++|++|||.+.+ .++|++..+.+|++.....
T Consensus 174 ~-~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~ 217 (381)
T 3rlf_A 174 I-EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217 (381)
T ss_dssp H-HHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred H-HHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 4 55556543599999999997655 6899988889998876654
No 19
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.79 E-value=6.2e-19 Score=193.03 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=118.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhccccccCCcc---ch----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQIGCFVPCDSA---TI---- 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~g~~vpa~~~---~~---- 592 (813)
..+.++++|++.+|++++|+||||||||||||+|+++... .++| +||...+ .+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~e 94 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVG-MVFQNYALYPHMTVFE 94 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEE-EECSSCCCCTTSCHHH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEE-EEecCcccCCCCCHHH
Confidence 4578899999999999999999999999999999754210 0122 2332211 00
Q ss_pred -----------------hHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHH
Q psy5289 593 -----------------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMAC 654 (813)
Q Consensus 593 -----------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~ 654 (813)
..++.++..+++.+...+..+++|++++|...+++. +.+|+++|||||++|+|+.....+..
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 174 (359)
T 2yyz_A 95 NIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRA 174 (359)
T ss_dssp HHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 123457778888887888889999998887766665 69999999999999999988777755
Q ss_pred HHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 655 SIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 655 ~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
.+..+.++.|.++|++|||.+.+ .+++++..+.+|++.....
T Consensus 175 -~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~ 217 (359)
T 2yyz_A 175 -EIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGT 217 (359)
T ss_dssp -HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred -HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 44455443589999999997665 6889888888888865543
No 20
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.79 E-value=2.8e-19 Score=186.85 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=113.4
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCcc---c-----
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSA---T----- 591 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~---~----- 591 (813)
.+.++++|++.+|++++|+||||||||||||+++++... .++ .++|.... .
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i-~~v~q~~~~~~~~tv~e 92 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR-AYLSQQQTPPFATPVWH 92 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHE-EEECSCCCCCTTCBHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceE-EEECCCCccCCCCcHHH
Confidence 467899999999999999999999999999999765311 011 23333211 0
Q ss_pred -----------hhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCc-------EEEEeCCCCCCChhhHHHH
Q psy5289 592 -----------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENS-------LVIIDELGRGTSTFDGFGM 652 (813)
Q Consensus 592 -----------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~-------LlllDEp~~Gtd~~d~~~i 652 (813)
...++.++..+|+.+......+++|++++|...+++. +.+|+ ++|||||++|+|+.....+
T Consensus 93 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l 172 (249)
T 2qi9_C 93 YLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 172 (249)
T ss_dssp HHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH
T ss_pred HHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH
Confidence 1123456777888777778888999999887776665 57888 9999999999999887777
Q ss_pred HHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 653 ACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 653 ~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
.. ++..+.+ .|.++|++||+.+.. .+++++..+.+|++..
T Consensus 173 ~~-~l~~l~~-~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 213 (249)
T 2qi9_C 173 DK-ILSALSQ-QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA 213 (249)
T ss_dssp HH-HHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred HH-HHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 54 5555665 389999999998776 6888877677766644
No 21
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.78 E-value=4.8e-19 Score=193.40 Aligned_cols=173 Identities=15% Similarity=0.121 Sum_probs=124.3
Q ss_pred cceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------h
Q psy5289 519 TGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------A 579 (813)
Q Consensus 519 ~~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------a 579 (813)
+..+.+++...-+ .+...+.++++|++.+|++++|+||||||||||||+|+++... .
T Consensus 12 ~~~l~~~~l~~~y----~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r 87 (355)
T 1z47_A 12 SMTIEFVGVEKIY----PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKR 87 (355)
T ss_dssp CEEEEEEEEEECC----TTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGS
T ss_pred CceEEEEEEEEEE----cCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhC
Confidence 3456666643322 0224578899999999999999999999999999999754211 0
Q ss_pred hccccccCCcc---chh---------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcE
Q psy5289 580 QIGCFVPCDSA---TIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSL 634 (813)
Q Consensus 580 q~g~~vpa~~~---~~~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~L 634 (813)
++| +||...+ .++ .++.++..+++.+...+..+++|++++|...+++. +.+|++
T Consensus 88 ~ig-~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 166 (355)
T 1z47_A 88 NVG-LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQV 166 (355)
T ss_dssp SEE-EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cEE-EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 111 2332211 011 13456777888877788889999998887766665 699999
Q ss_pred EEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 635 VIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 635 lllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
+|||||++|+|+.....+.. .+..+.++.|.++|++|||.+.+ .+++++..+.+|++.....
T Consensus 167 LLLDEP~s~LD~~~r~~l~~-~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~ 229 (355)
T 1z47_A 167 LLFDEPFAAIDTQIRRELRT-FVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGT 229 (355)
T ss_dssp EEEESTTCCSSHHHHHHHHH-HHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred EEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999988777755 44555543589999999997665 6889888888888765543
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.78 E-value=1.1e-18 Score=184.44 Aligned_cols=155 Identities=15% Similarity=0.049 Sum_probs=115.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh------------------hhhccccccCCc----cch----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF------------------LAQIGCFVPCDS----ATI---- 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~------------------laq~g~~vpa~~----~~~---- 592 (813)
..+.++++|++.+|++++|+||||||||||||+++++.. ..++ .++|... ...
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i-~~v~q~~~~~~~~~tv~e 98 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNI-GIAFQYPEDQFFAERVFD 98 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGE-EEECSSGGGGCCCSSHHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhE-EEEeccchhhcCCCcHHH
Confidence 357889999999999999999999999999999965421 0112 2344321 000
Q ss_pred ----------------hHHHHHHHhcCCc--hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHH
Q psy5289 593 ----------------SVVDQIFTRVGAA--DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMA 653 (813)
Q Consensus 593 ----------------~~~d~i~~~~~~~--d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~ 653 (813)
..++.++..+|+. +......+++|++++|...+++. +.+|+++||||||+|+|+.....+.
T Consensus 99 nl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~ 178 (266)
T 2yz2_A 99 EVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL 178 (266)
T ss_dssp HHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHH
Confidence 1134567778887 77777788999999887666665 6999999999999999998877774
Q ss_pred HHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCceEeeEEEEEE
Q psy5289 654 CSIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALE 696 (813)
Q Consensus 654 ~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v~~~~~~~~~ 696 (813)
. ++..+.+ .|.++|++||+.+... +++++..+.+|++....
T Consensus 179 ~-~l~~l~~-~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g 220 (266)
T 2yz2_A 179 R-IVEKWKT-LGKTVILISHDIETVINHVDRVVVLEKGKKVFDG 220 (266)
T ss_dssp H-HHHHHHH-TTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEE
T ss_pred H-HHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 4 5556665 3899999999977654 68887777777765443
No 23
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.78 E-value=7.4e-19 Score=183.63 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=107.6
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh---------------------hhhccccccCCccc--hhH-
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF---------------------LAQIGCFVPCDSAT--ISV- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~---------------------laq~g~~vpa~~~~--~~~- 594 (813)
..+.++++|++.+|++++|+||||||||||||+++++.. ..++ .++|....- .++
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i-~~v~Q~~~l~~~tv~ 100 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV-GVVLQDNVLLNRSII 100 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE-EEECSSCCCTTSBHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE-EEEeCCCccccccHH
Confidence 468899999999999999999999999999999965421 0112 244433210 111
Q ss_pred --------------HHHHHHhcCCchhHhh-----------ccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q psy5289 595 --------------VDQIFTRVGAADSQYR-----------GISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 595 --------------~d~i~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d 648 (813)
+..++..+++.+.+.. ..+++|++++|...+++. +.+|+++||||||+|+|+..
T Consensus 101 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~ 180 (247)
T 2ff7_A 101 DNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180 (247)
T ss_dssp HHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHH
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 1233444555443332 236888888887766665 68999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEE
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSA 694 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~ 694 (813)
...+.. ++..+. .|.++|++||+.+....++++..+.+|++..
T Consensus 181 ~~~i~~-~l~~~~--~g~tviivtH~~~~~~~~d~v~~l~~G~i~~ 223 (247)
T 2ff7_A 181 EHVIMR-NMHKIC--KGRTVIIIAHRLSTVKNADRIIVMEKGKIVE 223 (247)
T ss_dssp HHHHHH-HHHHHH--TTSEEEEECSSGGGGTTSSEEEEEETTEEEE
T ss_pred HHHHHH-HHHHHc--CCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 777755 455554 3899999999988877777776666666543
No 24
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.78 E-value=5.6e-19 Score=183.62 Aligned_cols=153 Identities=20% Similarity=0.189 Sum_probs=113.0
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhccccccCCcc---ch------
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQIGCFVPCDSA---TI------ 592 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~g~~vpa~~~---~~------ 592 (813)
+.++++|++.+ ++++|+||||||||||||+++++... .++ .++|.... .+
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i-~~v~q~~~l~~~ltv~enl 91 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGI-GFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCC-BCCCSSCCCCTTSCHHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcE-EEEcCCCccCCCCcHHHHH
Confidence 47899999999 99999999999999999999754210 012 23443211 00
Q ss_pred -------------hHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHH
Q psy5289 593 -------------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIAR 658 (813)
Q Consensus 593 -------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~ 658 (813)
..++.++..+|+.+......+++|++|+|...+++. +.+|+++||||||+|+|+.....+.. ++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~-~l~ 170 (240)
T 2onk_A 92 AYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME-ELR 170 (240)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHH-HHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHH
Confidence 113456777888777777788999999887776665 69999999999999999988777754 555
Q ss_pred HHHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEEEE
Q psy5289 659 ELASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 659 ~l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~~~ 696 (813)
.+.++.|.++|++||+.+. ..+++++..+.+|++....
T Consensus 171 ~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g 209 (240)
T 2onk_A 171 FVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKG 209 (240)
T ss_dssp HHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 5544248899999999765 4688888777777775443
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.77 E-value=6.4e-19 Score=184.59 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=104.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhh--h-h-------------------hhhcc-ccccCCccc---h
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS--V-F-------------------LAQIG-CFVPCDSAT---I 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~--~-~-------------------laq~g-~~vpa~~~~---~ 592 (813)
..+.++++|++.+|++++|+||||||||||+|+++++ . . ..+.+ .++|....- +
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGV 95 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSC
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCC
Confidence 4678899999999999999999999999999999775 1 0 00111 244433210 1
Q ss_pred h------------------------HHHHHHHhcCC-chhHhhccch-hHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q psy5289 593 S------------------------VVDQIFTRVGA-ADSQYRGIST-FMMEMKETATVIKK-CTENSLVIIDELGRGTS 645 (813)
Q Consensus 593 ~------------------------~~d~i~~~~~~-~d~~~~~~s~-f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd 645 (813)
+ .++.++.++|+ .+......++ +|++++|...+++. +.+|+++||||||+|+|
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD 175 (250)
T 2d2e_A 96 TIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175 (250)
T ss_dssp BHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTC
T ss_pred CHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence 1 11234555666 3555566677 99998887776665 58999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-h-cCCCCceEeeEEE
Q psy5289 646 TFDGFGMACSIARELASHRQPFTLFATHFHEIAL-L-SRVIPTFRNVQVS 693 (813)
Q Consensus 646 ~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~-~~~~~~v~~~~~~ 693 (813)
+.....+.. ++..+.+ .|.++|++||+.++.. + ++++..+.+|++.
T Consensus 176 ~~~~~~l~~-~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~ 223 (250)
T 2d2e_A 176 IDALKVVAR-GVNAMRG-PNFGALVITHYQRILNYIQPDKVHVMMDGRVV 223 (250)
T ss_dssp HHHHHHHHH-HHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEETTEEE
T ss_pred HHHHHHHHH-HHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEECCEEE
Confidence 988777644 5555654 5899999999987765 4 3766556555543
No 26
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=7.5e-19 Score=186.70 Aligned_cols=167 Identities=18% Similarity=0.175 Sum_probs=118.6
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------------
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------- 578 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------- 578 (813)
..+.+++...-+ +...+.++++|++.+|++++|+||||||||||||+++++...
T Consensus 20 ~~l~~~~l~~~y-----~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 94 (279)
T 2ihy_A 20 MLIQLDQIGRMK-----QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAET 94 (279)
T ss_dssp EEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHH
T ss_pred ceEEEEeEEEEE-----CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHH
Confidence 356666654322 235688999999999999999999999999999999654210
Q ss_pred --hhccccccCCc---c----c-----------------------hhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHH
Q psy5289 579 --AQIGCFVPCDS---A----T-----------------------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI 626 (813)
Q Consensus 579 --aq~g~~vpa~~---~----~-----------------------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il 626 (813)
.++| ++|... . + ...+..++.++|+.+...+..+++|++++|...++
T Consensus 95 ~~~~i~-~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lA 173 (279)
T 2ihy_A 95 VRQHIG-FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIA 173 (279)
T ss_dssp HHTTEE-EECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred HcCcEE-EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 0122 222210 0 0 01123456677777777778889999998877766
Q ss_pred Hh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEE--EEEcCChHHH-hhcCCCCceEeeEEEE
Q psy5289 627 KK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFT--LFATHFHEIA-LLSRVIPTFRNVQVSA 694 (813)
Q Consensus 627 ~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~--l~~TH~~el~-~~~~~~~~v~~~~~~~ 694 (813)
+. +.+|+++||||||+|+|+.....+.. ++..+.++ |.++ |++||+.+.+ .+++++..+.+|++..
T Consensus 174 raL~~~p~lLlLDEPts~LD~~~~~~l~~-~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~ 243 (279)
T 2ihy_A 174 RALMGQPQVLILDEPAAGLDFIARESLLS-ILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ 243 (279)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEE
T ss_pred HHHhCCCCEEEEeCCccccCHHHHHHHHH-HHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 65 68999999999999999988777754 55556653 8889 9999997765 5788776666666544
No 27
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.77 E-value=9.8e-19 Score=191.63 Aligned_cols=157 Identities=16% Similarity=0.155 Sum_probs=117.7
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhccccccCCcc---chh---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQIGCFVPCDSA---TIS--- 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~g~~vpa~~~---~~~--- 593 (813)
..+.++++|++.+|++++|+||||||||||||+|+++... .++| +||...+ .++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~e 94 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG-LVFQNWALYPHMTVYK 94 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEE-EECTTCCCCTTSCHHH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEE-EEecCcccCCCCCHHH
Confidence 4578899999999999999999999999999999764211 0122 3333221 111
Q ss_pred ------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHH
Q psy5289 594 ------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMAC 654 (813)
Q Consensus 594 ------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~ 654 (813)
.++.++..+++.+...+..+++|++++|...+++. +.+|+++|||||++|+|+.....+..
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 174 (362)
T 2it1_A 95 NIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRA 174 (362)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 12346677788777778889999998887766665 69999999999999999988777755
Q ss_pred HHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 655 SIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 655 ~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
.+..+.++.|.++|++|||.+.+ .+++++..+.+|++.....
T Consensus 175 -~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~ 217 (362)
T 2it1_A 175 -ELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGT 217 (362)
T ss_dssp -HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred -HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 45555543589999999997654 6899888888888876543
No 28
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.77 E-value=1.1e-18 Score=183.74 Aligned_cols=152 Identities=11% Similarity=0.112 Sum_probs=112.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh------------------hccccccCCcc-chh------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA------------------QIGCFVPCDSA-TIS------ 593 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la------------------q~g~~vpa~~~-~~~------ 593 (813)
..+.++++|++. |++++|+||||||||||||+++++. .. ++|.++|.... ..+
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~ 95 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVY 95 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHH
Confidence 457889999999 9999999999999999999997653 21 12215554321 111
Q ss_pred -----------HHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q psy5289 594 -----------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIAREL 660 (813)
Q Consensus 594 -----------~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l 660 (813)
.++.++.++++. +......+++|++++|...+++. +.+|+++||||||+|+|+.....+.. ++..+
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~-~L~~~ 174 (263)
T 2pjz_A 96 LYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISR-YIKEY 174 (263)
T ss_dssp HHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHH-HHHHS
T ss_pred HhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHH-HHHHh
Confidence 123466778887 77778889999998887766665 68999999999999999977665533 33322
Q ss_pred HhcCCCEEEEEcCChHHH-hhcC-CCCceEeeEEEEEEE
Q psy5289 661 ASHRQPFTLFATHFHEIA-LLSR-VIPTFRNVQVSALEQ 697 (813)
Q Consensus 661 ~~~~~~~~l~~TH~~el~-~~~~-~~~~v~~~~~~~~~~ 697 (813)
.+ ++|++||+.+.. .+++ ++..+.+|++.....
T Consensus 175 ---~~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~ 209 (263)
T 2pjz_A 175 ---GK-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPIS 209 (263)
T ss_dssp ---CS-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEE
T ss_pred ---cC-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecC
Confidence 23 999999997664 6888 888888888876554
No 29
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.77 E-value=9.1e-19 Score=192.57 Aligned_cols=157 Identities=17% Similarity=0.116 Sum_probs=117.0
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhccccccCCcc---ch----
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQIGCFVPCDSA---TI---- 592 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~g~~vpa~~~---~~---- 592 (813)
..+.++++|++.+|++++|+||||||||||||+|+++... .++| +||...+ .+
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~e 102 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS-MVFQSYAVWPHMTVYE 102 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEE-EEEC------CCCHHH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEE-EEecCcccCCCCCHHH
Confidence 4588999999999999999999999999999999754210 0122 2322211 00
Q ss_pred -----------------hHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHH
Q psy5289 593 -----------------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMAC 654 (813)
Q Consensus 593 -----------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~ 654 (813)
..++.++..+++.+...+..+++|++++|...+++. +.+|+++|||||++|+|+.....+..
T Consensus 103 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 182 (372)
T 1v43_A 103 NIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRA 182 (372)
T ss_dssp HHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 123456778888877778888999888876666654 79999999999999999988777755
Q ss_pred HHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 655 SIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 655 ~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
.+..+.++.|.++|++|||.+.+ .+++++..+.+|++.....
T Consensus 183 -~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~ 225 (372)
T 1v43_A 183 -EIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 225 (372)
T ss_dssp -HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred -HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 44555543589999999997665 6899888888888865544
No 30
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.77 E-value=9.7e-19 Score=190.83 Aligned_cols=155 Identities=13% Similarity=0.113 Sum_probs=117.6
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhccccccCCcc---ch------
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQIGCFVPCDSA---TI------ 592 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~g~~vpa~~~---~~------ 592 (813)
+.++++|++.+|++++|+||||||||||||+|+++... .++ .+||...+ .+
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~i-g~v~Q~~~l~~~ltv~enl 93 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI-AFVYQNYSLFPHMNVKKNL 93 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTC-EEECTTCCCCTTSCHHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcE-EEEecCcccCCCCCHHHHH
Confidence 78899999999999999999999999999999754210 112 23443321 11
Q ss_pred ------------hHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q psy5289 593 ------------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARE 659 (813)
Q Consensus 593 ------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~ 659 (813)
..++.++..+++.+...+..+++|++++|...+++. +.+|+++|||||++|+|+.....+.. .+..
T Consensus 94 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~-~l~~ 172 (348)
T 3d31_A 94 EFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE-MLSV 172 (348)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHH-HHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH-HHHH
Confidence 123456777888777778889999999887776665 69999999999999999988777754 5555
Q ss_pred HHhcCCCEEEEEcCChHH-HhhcCCCCceEeeEEEEEEE
Q psy5289 660 LASHRQPFTLFATHFHEI-ALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 660 l~~~~~~~~l~~TH~~el-~~~~~~~~~v~~~~~~~~~~ 697 (813)
+.++.|.++|++|||.+. ..+++++..+.+|++.....
T Consensus 173 l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~ 211 (348)
T 3d31_A 173 LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGK 211 (348)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEEC
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 554368999999999765 46889888888888765543
No 31
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.77 E-value=5.2e-19 Score=186.97 Aligned_cols=168 Identities=15% Similarity=0.151 Sum_probs=114.7
Q ss_pred eEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh-hh---------------------
Q psy5289 521 SLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV-FL--------------------- 578 (813)
Q Consensus 521 ~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~-~l--------------------- 578 (813)
.+.+++...-+ +...+.++++|++.+|++++|+||||||||||||+++++. +-
T Consensus 20 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 94 (267)
T 2zu0_C 20 MLSIKDLHVSV-----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94 (267)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 46666543222 2356889999999999999999999999999999997752 00
Q ss_pred hhcc-ccccCCccc---h----------------------------hHHHHHHHhcCCch-hHhhccc-hhHHHHHHHHH
Q psy5289 579 AQIG-CFVPCDSAT---I----------------------------SVVDQIFTRVGAAD-SQYRGIS-TFMMEMKETAT 624 (813)
Q Consensus 579 aq~g-~~vpa~~~~---~----------------------------~~~d~i~~~~~~~d-~~~~~~s-~f~~e~~~~~~ 624 (813)
.+.+ .++|....- + ..++.++.++|+.+ ......+ ++|++++|...
T Consensus 95 ~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~ 174 (267)
T 2zu0_C 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND 174 (267)
T ss_dssp HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH
T ss_pred hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 0111 234433210 0 01234556667653 3444555 59998888776
Q ss_pred HHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh-h-cCCCCceEeeEEEEE
Q psy5289 625 VIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL-L-SRVIPTFRNVQVSAL 695 (813)
Q Consensus 625 il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~-~~~~~~v~~~~~~~~ 695 (813)
+++. +.+|+++||||||+|+|+.....+.. ++..+.+ .|.++|++||+.+... + ++++..+.+|++...
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~-~l~~l~~-~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVAD-GVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHH-HHHTTCC-SSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHh-cCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 6665 58999999999999999987776644 5555554 4899999999988775 3 677666666666543
No 32
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.77 E-value=9.5e-19 Score=185.29 Aligned_cols=169 Identities=14% Similarity=0.094 Sum_probs=111.7
Q ss_pred ceEEEEccccCeeEecC-CceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------
Q psy5289 520 GSLVLNQCRHPIVELQG-GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------- 578 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~-~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------- 578 (813)
+.|.+++...-+ .. +...+.++++|++.+|++++|+||||||||||||+++++...
T Consensus 15 ~~l~~~~l~~~y---~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 91 (271)
T 2ixe_A 15 GLVKFQDVSFAY---PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL 91 (271)
T ss_dssp CCEEEEEEEECC---TTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred ceEEEEEEEEEe---CCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHH
Confidence 347777654322 00 014688999999999999999999999999999999654210
Q ss_pred -hhccccccCCcc--chhHHHHH-------------------------HHhc--CCchhHhhccchhHHHHHHHHHHHHh
Q psy5289 579 -AQIGCFVPCDSA--TISVVDQI-------------------------FTRV--GAADSQYRGISTFMMEMKETATVIKK 628 (813)
Q Consensus 579 -aq~g~~vpa~~~--~~~~~d~i-------------------------~~~~--~~~d~~~~~~s~f~~e~~~~~~il~~ 628 (813)
.++ .++|.... ..++.+.+ +..+ |..+.+....+++|++++|+..+++.
T Consensus 92 ~~~i-~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAra 170 (271)
T 2ixe_A 92 HTQV-AAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARA 170 (271)
T ss_dssp HHHE-EEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHH
T ss_pred hccE-EEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHH
Confidence 112 24444321 11222222 2222 22222334457888888877666655
Q ss_pred -CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 629 -CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 629 -~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
+.+|+++|||||++|+|+.....+.. ++..+.++.|.++|++||+.+....++++..+.+|++.
T Consensus 171 L~~~p~lllLDEPts~LD~~~~~~i~~-~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 171 LIRKPRLLILDNATSALDAGNQLRVQR-LLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVC 235 (271)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHH-HHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEE
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 79999999999999999988776644 45555432489999999999887777776656665553
No 33
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.77 E-value=5.1e-19 Score=182.83 Aligned_cols=154 Identities=13% Similarity=0.054 Sum_probs=104.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--------hccccccCCccc--hhHH-------------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--------QIGCFVPCDSAT--ISVV------------- 595 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--------q~g~~vpa~~~~--~~~~------------- 595 (813)
..+.++++|++.+|++++|+||||||||||||+++++.... ++ .++|....- .++.
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i-~~v~q~~~~~~~tv~enl~~~~~~~~~~ 99 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI-SFCSQFSWIMPGTIKENIIFGVSYDEYR 99 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCE-EEECSSCCCCSBCHHHHHHTTSCCCHHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEE-EEEecCCcccCCCHHHHhhccCCcChHH
Confidence 46888999999999999999999999999999997653211 11 234432210 0111
Q ss_pred -HHHHHhcCCchhHh-----------hccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh
Q psy5289 596 -DQIFTRVGAADSQY-----------RGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELAS 662 (813)
Q Consensus 596 -d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~ 662 (813)
.......++.+.+. ...+++|++++|+..+++. +.+|+++|||||++|+|+.....+...++..+.
T Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~- 178 (229)
T 2pze_A 100 YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM- 178 (229)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-
T ss_pred HHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-
Confidence 22233334433222 1236888888887666665 689999999999999999876665432222222
Q ss_pred cCCCEEEEEcCChHHHhhcCCCCceEeeEEEEE
Q psy5289 663 HRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 663 ~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~ 695 (813)
.+.++|++||+.+....++++..+.+|++...
T Consensus 179 -~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~ 210 (229)
T 2pze_A 179 -ANKTRILVTSKMEHLKKADKILILHEGSSYFY 210 (229)
T ss_dssp -TTSEEEEECCCHHHHHHCSEEEEEETTEEEEE
T ss_pred -CCCEEEEEcCChHHHHhCCEEEEEECCEEEEE
Confidence 37899999999888777887777777766543
No 34
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.76 E-value=2.4e-18 Score=189.62 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=117.5
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------------hhccccccCCcc---
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------------AQIGCFVPCDSA--- 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------------aq~g~~vpa~~~--- 590 (813)
..+.++++|++.+|++++|+||||||||||||+|+++... .++ .+||...+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~i-g~v~Q~~~l~~ 94 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI-AMVFQSYALYP 94 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSE-EEECSCCCCCT
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCE-EEEeCCCccCC
Confidence 4578899999999999999999999999999999754210 011 13333221
Q ss_pred chh---------------------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q psy5289 591 TIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 591 ~~~---------------------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d 648 (813)
.++ .++.++..+++.+...+..+++|++++|...+++. +.+|+++|||||++|+|+..
T Consensus 95 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 174 (372)
T 1g29_1 95 HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174 (372)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 111 12345667788777778889999998887666665 69999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
...+.. .+..+.++.|.++|++|||.+.+ .+++++..+.+|++.....
T Consensus 175 r~~l~~-~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~ 223 (372)
T 1g29_1 175 RVRMRA-ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223 (372)
T ss_dssp HHHHHH-HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHH-HHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCC
Confidence 777755 44555443589999999997665 6889888888888876544
No 35
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.76 E-value=2e-18 Score=189.11 Aligned_cols=155 Identities=14% Similarity=0.101 Sum_probs=116.4
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh------------------------hhccccccCCcc---ch-
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------------------AQIGCFVPCDSA---TI- 592 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l------------------------aq~g~~vpa~~~---~~- 592 (813)
+.++++|++.+|++++|+||||||||||||+|+++... .++| +||...+ .+
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig-~v~Q~~~l~~~lt 98 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIG-MVFQTWALYPNLT 98 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEE-EEETTSCCCTTSC
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEE-EEeCCCccCCCCC
Confidence 78899999999999999999999999999999754210 0111 2332211 00
Q ss_pred --------------------hHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q psy5289 593 --------------------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFG 651 (813)
Q Consensus 593 --------------------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~ 651 (813)
..++.++..+++.+...+..+++|++++|...+++. +.+|+++|||||++|+|+.....
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~ 178 (353)
T 1oxx_K 99 AFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178 (353)
T ss_dssp HHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence 123456777888877788889999998887666665 69999999999999999988877
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEeeEEEEEEE
Q psy5289 652 MACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 652 i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~~~~~~~~~ 697 (813)
+.. .+..+.++.|.++|++|||.+.+ .+++++..+.+|++.....
T Consensus 179 l~~-~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~ 224 (353)
T 1oxx_K 179 ARA-LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224 (353)
T ss_dssp HHH-HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 755 44555443589999999997655 6889888888888765543
No 36
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.75 E-value=1.6e-18 Score=180.83 Aligned_cols=150 Identities=17% Similarity=0.079 Sum_probs=103.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------hhccccccCCccc--hhH--
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------AQIGCFVPCDSAT--ISV-- 594 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------aq~g~~vpa~~~~--~~~-- 594 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .+.-.++|....- .++
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~e 94 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRE 94 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHH
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHH
Confidence 4578899999999999999999999999999999754210 0111234433210 011
Q ss_pred --------------HHHHHHhcCCchhHh-----------hccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhh
Q psy5289 595 --------------VDQIFTRVGAADSQY-----------RGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFD 648 (813)
Q Consensus 595 --------------~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d 648 (813)
+..++..+++.+.+. ...+++|++++|...+++. +.+|+++||||||+|+|+..
T Consensus 95 nl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~ 174 (243)
T 1mv5_A 95 NLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174 (243)
T ss_dssp HTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSS
T ss_pred HHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 223344455443322 2346788888887666655 68999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeE
Q psy5289 649 GFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQ 691 (813)
Q Consensus 649 ~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~ 691 (813)
...+.. ++..+.+ |+++|++||+.+....++++..+.+|+
T Consensus 175 ~~~i~~-~l~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~ 214 (243)
T 1mv5_A 175 ESMVQK-ALDSLMK--GRTTLVIAHRLSTIVDADKIYFIEKGQ 214 (243)
T ss_dssp CCHHHH-HHHHHHT--TSEEEEECCSHHHHHHCSEEEEEETTE
T ss_pred HHHHHH-HHHHhcC--CCEEEEEeCChHHHHhCCEEEEEECCE
Confidence 877755 4455553 899999999988877777665555543
No 37
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=180.63 Aligned_cols=152 Identities=13% Similarity=0.120 Sum_probs=102.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--------hccccccCCcc--chhHHH------------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--------QIGCFVPCDSA--TISVVD------------ 596 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--------q~g~~vpa~~~--~~~~~d------------ 596 (813)
..+.++++|++.+|++++|+||||||||||||+++++.... ++ .++|.... ..++.+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i-~~v~Q~~~~~~~tv~enl~~~~~~~~~~ 96 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSV-AYVPQQAWIQNDSLRENILFGCQLEEPY 96 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCE-EEECSSCCCCSEEHHHHHHTTSCCCTTH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE-EEEcCCCcCCCcCHHHHhhCccccCHHH
Confidence 46788999999999999999999999999999997653211 11 23443321 112222
Q ss_pred --HHHHhcCCchh-----------HhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHH--HHH
Q psy5289 597 --QIFTRVGAADS-----------QYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIA--REL 660 (813)
Q Consensus 597 --~i~~~~~~~d~-----------~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~--~~l 660 (813)
.+...++..+. +....+++|++++|+..+++. +.+|+++|||||++|+|+.....+...+. ..+
T Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~ 176 (237)
T 2cbz_A 97 YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM 176 (237)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST
T ss_pred HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh
Confidence 22222222211 234457888888887666655 58999999999999999987666644332 122
Q ss_pred HhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 661 ASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 661 ~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
. .|.++|++||+.+....++++..+.+|++.
T Consensus 177 ~--~~~tviivtH~~~~~~~~d~v~~l~~G~i~ 207 (237)
T 2cbz_A 177 L--KNKTRILVTHSMSYLPQVDVIIVMSGGKIS 207 (237)
T ss_dssp T--TTSEEEEECSCSTTGGGSSEEEEEETTEEE
T ss_pred c--CCCEEEEEecChHHHHhCCEEEEEeCCEEE
Confidence 2 388999999998877777776666666553
No 38
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.75 E-value=2e-18 Score=176.15 Aligned_cols=141 Identities=11% Similarity=0.080 Sum_probs=102.4
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh---------------hhccccccCCcc---chh--------
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------------AQIGCFVPCDSA---TIS-------- 593 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l---------------aq~g~~vpa~~~---~~~-------- 593 (813)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.++|.... .++
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 102 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAV 102 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 688899999999999999999999999999999654210 011123443321 011
Q ss_pred -----------HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHH
Q psy5289 594 -----------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELA 661 (813)
Q Consensus 594 -----------~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~ 661 (813)
.++.++..+|+.+. ....+++|++++|...+++. +.+|+++|||||++|+|+.....+.. ++..+.
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~~~ 180 (214)
T 1sgw_A 103 ASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK-SILEIL 180 (214)
T ss_dssp HHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHH-HHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHH-HHHHHH
Confidence 12345666776665 66778899988887776665 68999999999999999988777755 455555
Q ss_pred hcCCCEEEEEcCChHHHh-hcCC
Q psy5289 662 SHRQPFTLFATHFHEIAL-LSRV 683 (813)
Q Consensus 662 ~~~~~~~l~~TH~~el~~-~~~~ 683 (813)
+ .|.++|++||+.+... ++++
T Consensus 181 ~-~g~tiiivtHd~~~~~~~~d~ 202 (214)
T 1sgw_A 181 K-EKGIVIISSREELSYCDVNEN 202 (214)
T ss_dssp H-HHSEEEEEESSCCTTSSEEEE
T ss_pred h-CCCEEEEEeCCHHHHHHhCCE
Confidence 4 3789999999976654 4444
No 39
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.74 E-value=5.4e-18 Score=178.46 Aligned_cols=151 Identities=12% Similarity=0.025 Sum_probs=103.7
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------------------hhccccccCCcc--chhHHH--
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------------------AQIGCFVPCDSA--TISVVD-- 596 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------------------aq~g~~vpa~~~--~~~~~d-- 596 (813)
.+.++++|++.+|++++|+||||||||||||+++++... .+.-.++|.... ..++.+
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 113 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI 113 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHH
Confidence 588999999999999999999999999999999754210 011123443321 112222
Q ss_pred -------------HHHHhcCCchhH-----------hhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHH
Q psy5289 597 -------------QIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFG 651 (813)
Q Consensus 597 -------------~i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~ 651 (813)
..+..+++.+.+ ....+++|++++|...+++. +.+|+++|||||++|+|+.....
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 193 (260)
T 2ghi_A 114 LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL 193 (260)
T ss_dssp HTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence 223334443322 12346788888887666655 58999999999999999988776
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 652 MACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 652 i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
+.. ++..+.+ +.++|++||+.+....++++..+.+|++.
T Consensus 194 i~~-~l~~l~~--~~tviivtH~~~~~~~~d~i~~l~~G~i~ 232 (260)
T 2ghi_A 194 FQK-AVEDLRK--NRTLIIIAHRLSTISSAESIILLNKGKIV 232 (260)
T ss_dssp HHH-HHHHHTT--TSEEEEECSSGGGSTTCSEEEEEETTEEE
T ss_pred HHH-HHHHhcC--CCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 644 5555543 78999999998877667766656666554
No 40
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.74 E-value=2.4e-18 Score=183.58 Aligned_cols=152 Identities=14% Similarity=0.089 Sum_probs=102.3
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------hhccccccCCcc--chhHHHHH----------
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------AQIGCFVPCDSA--TISVVDQI---------- 598 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------aq~g~~vpa~~~--~~~~~d~i---------- 598 (813)
..+.++++|++.+|++++|+||||||||||||+++++... .++ .++|.... ..++.+.+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i-~~v~Q~~~l~~~tv~enl~~~~~~~~~~ 129 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI-SFCSQNSWIMPGTIKENIIGVSYDEYRY 129 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCE-EEECSSCCCCSSBHHHHHHTTCCCHHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE-EEEeCCCccCcccHHHHhhCcccchHHH
Confidence 3578899999999999999999999999999999765321 112 24444321 11222222
Q ss_pred ---HHhcCCchhHhh-----------ccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q psy5289 599 ---FTRVGAADSQYR-----------GISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASH 663 (813)
Q Consensus 599 ---~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~ 663 (813)
+...++.+.+.. ..+++|++|+|...+++. +.+|+++|||||++|+|+.....+...++..+.
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-- 207 (290)
T 2bbs_A 130 RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-- 207 (290)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--
T ss_pred HHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--
Confidence 222333322211 125788888887766665 689999999999999999876665432222222
Q ss_pred CCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 664 RQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 664 ~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
.|.++|++||+.+....++++..+.+|++.
T Consensus 208 ~~~tviivtHd~~~~~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 208 ANKTRILVTSKMEHLKKADKILILHEGSSY 237 (290)
T ss_dssp TTSEEEEECCCHHHHHHSSEEEEEETTEEE
T ss_pred CCCEEEEEecCHHHHHcCCEEEEEECCeEE
Confidence 378999999999887778876666666554
No 41
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.73 E-value=9.6e-18 Score=179.93 Aligned_cols=170 Identities=15% Similarity=0.120 Sum_probs=115.4
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hh
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LA 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------la 579 (813)
+.|.+++...-+ .+...+.++++|++.+|++++|+||||||||||+|+++.+.. +.
T Consensus 52 ~~i~~~~vs~~y----~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r 127 (306)
T 3nh6_A 52 GRIEFENVHFSY----ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLR 127 (306)
T ss_dssp CCEEEEEEEEES----STTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHH
T ss_pred CeEEEEEEEEEc----CCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHh
Confidence 457777653322 123568999999999999999999999999999999965321 01
Q ss_pred hccccccCCccc--hhHHH---------------HHHHhcCCchhHh-----------hccchhHHHHHHHHHHHHh-CC
Q psy5289 580 QIGCFVPCDSAT--ISVVD---------------QIFTRVGAADSQY-----------RGISTFMMEMKETATVIKK-CT 630 (813)
Q Consensus 580 q~g~~vpa~~~~--~~~~d---------------~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~~-~~ 630 (813)
+.-.+||.+..- .++.+ ......++.+.+. .....+|++++|+..+++. +.
T Consensus 128 ~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 128 SHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp HTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred cceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 112244443211 12222 2333344443332 2235788888887666665 58
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEE
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~ 696 (813)
+|+++||||||+|+|+.....+.. .+..+.+ ++|+|++||+.+.+..++++..+.+|++....
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~-~l~~l~~--~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G 270 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQA-SLAKVCA--NRTTIVVAHRLSTVVNADQILVIKDGCIVERG 270 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHH-HHHHHHT--TSEEEEECCSHHHHHTCSEEEEEETTEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHH-HHHHHcC--CCEEEEEEcChHHHHcCCEEEEEECCEEEEEC
Confidence 999999999999999988777755 4444554 68999999999888888888777777765443
No 42
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.71 E-value=9.8e-18 Score=185.51 Aligned_cols=170 Identities=11% Similarity=0.061 Sum_probs=120.7
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------h
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------A 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------a 579 (813)
+.|++++....+- .+...+.++++|++.+|++++|+||||||||||||+|+++... .
T Consensus 18 ~~i~~~~l~~~y~---~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 18 GQMTVKDLTAKYT---EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp CCEEEEEEEEESS---SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHH
T ss_pred CeEEEEEEEEEec---CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhC
Confidence 4577776543321 1235688999999999999999999999999999999764210 1
Q ss_pred hccccccCCccch--h--------------HHHHHHHhcCCchhHhhccch-----------hHHHHHHHHHHHHh-CCC
Q psy5289 580 QIGCFVPCDSATI--S--------------VVDQIFTRVGAADSQYRGIST-----------FMMEMKETATVIKK-CTE 631 (813)
Q Consensus 580 q~g~~vpa~~~~~--~--------------~~d~i~~~~~~~d~~~~~~s~-----------f~~e~~~~~~il~~-~~~ 631 (813)
++ .+||...+-+ + .+..++..+++.+.+.+.... +|++++|+..+++. +.+
T Consensus 95 ~i-g~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 95 AF-GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp TE-EEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CE-EEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 12 2344332211 1 133456677777766666665 88888887666665 689
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEE
Q psy5289 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 632 ~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~ 696 (813)
|+++|||||++|+|+.....+.. .+..+. .++++|++||+.+....++++..+.+|++....
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~-~l~~~~--~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g 235 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRR-TLKQAF--ADCTVILCEARIEAMLECDQFLVIEENKVRQYD 235 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHH-HHHTTT--TTSCEEEECSSSGGGTTCSEEEEEETTEEEEES
T ss_pred CCEEEEeCCccCCCHHHHHHHHH-HHHHHh--CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999977666543 333332 478999999999888888888888888876543
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.66 E-value=3.2e-16 Score=181.41 Aligned_cols=147 Identities=15% Similarity=0.141 Sum_probs=107.1
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--h------------ccc-----------------cccCC
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--Q------------IGC-----------------FVPCD 588 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--q------------~g~-----------------~vpa~ 588 (813)
++.++++ .+.+|++++|+||||||||||||+++++.... . .|. +++..
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~ 114 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY 114 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSC
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhh
Confidence 4667888 88899999999999999999999997542110 0 010 11110
Q ss_pred c--------cch----------hHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 589 S--------ATI----------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 589 ~--------~~~----------~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
. ..+ ..+..++..+|+.+......+++|++++|+..|++. +.+|+++||||||+|+|+...
T Consensus 115 ~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~ 194 (538)
T 1yqt_A 115 VDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQR 194 (538)
T ss_dssp GGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred hhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 0 000 123567888888877788889999999887777765 589999999999999999887
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCceEe
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRN 689 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~~ 689 (813)
..+.. +++.+.+ .|.++|++|||.++. .+++++..+.+
T Consensus 195 ~~l~~-~L~~l~~-~g~tvi~vsHd~~~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 195 LNAAR-AIRRLSE-EGKSVLVVEHDLAVLDYLSDIIHVVYG 233 (538)
T ss_dssp HHHHH-HHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHH-HHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 77644 5666665 589999999997765 46777655543
No 44
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.65 E-value=8.1e-16 Score=180.25 Aligned_cols=172 Identities=15% Similarity=0.076 Sum_probs=115.3
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------h
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------A 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------a 579 (813)
+.+++++...-+- .+..++.++++|++++|++++|+|||||||||++|.+++.... .
T Consensus 338 ~~i~~~~v~~~y~---~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r 414 (578)
T 4a82_A 338 GRIDIDHVSFQYN---DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 414 (578)
T ss_dssp CCEEEEEEEECSC---SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CeEEEEEEEEEcC---CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHh
Confidence 4577776543221 1235689999999999999999999999999999998643210 1
Q ss_pred hccccccCCccc--hhHHH---------------HHHHhcCCchhHh-----------hccchhHHHHHHHHHHHHh-CC
Q psy5289 580 QIGCFVPCDSAT--ISVVD---------------QIFTRVGAADSQY-----------RGISTFMMEMKETATVIKK-CT 630 (813)
Q Consensus 580 q~g~~vpa~~~~--~~~~d---------------~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~~-~~ 630 (813)
+.-.++|.+..- -++.+ +.....++.+.+. .+...+|++++|+..+++. +.
T Consensus 415 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 415 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred hheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 111244443211 12222 2233333333222 2235788888887766665 58
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEE
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~ 697 (813)
+|+++||||||+|+|+.....+. ..++.+. .++|+|++||+.+....+|++..+.+|++...++
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~-~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 558 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQ-EALDVLS--KDRTTLIVAHRLSTITHADKIVVIENGHIVETGT 558 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHH-HHHHHHT--TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEEC
T ss_pred CCCEEEEECccccCCHHHHHHHH-HHHHHHc--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 99999999999999998766554 3455554 3789999999998888888887788887765543
No 45
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.65 E-value=9.6e-16 Score=179.82 Aligned_cols=170 Identities=12% Similarity=0.064 Sum_probs=115.1
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh--------------------h
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--------------------A 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l--------------------a 579 (813)
+.+++++...-+- .+...+.++++|++++|++++|+|||||||||++|.++++... .
T Consensus 340 ~~i~~~~v~~~y~---~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b5x_A 340 GEVDVKDVTFTYQ---GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLR 416 (582)
T ss_pred CeEEEEEEEEEcC---CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHh
Confidence 3466666543221 1124689999999999999999999999999999998643210 0
Q ss_pred hccccccCCccc--hhH----------------HHHHHHhcCCchhHhh-----------ccchhHHHHHHHHHHHHh-C
Q psy5289 580 QIGCFVPCDSAT--ISV----------------VDQIFTRVGAADSQYR-----------GISTFMMEMKETATVIKK-C 629 (813)
Q Consensus 580 q~g~~vpa~~~~--~~~----------------~d~i~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~~-~ 629 (813)
+.-.+||.+..- .++ +.+.+...++.+.+.. +..++|++++|+..+++. +
T Consensus 417 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 417 RHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred cCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 111244443210 011 2233444454443332 336788888887766665 6
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEE
Q psy5289 630 TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 630 ~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~ 695 (813)
.+|+++||||||+|+|+.....+.. .+..+.+ |+|+|++||+.+....+|++..+.+|++...
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQA-ALDELQK--NKTVLVIAHRLSTIEQADEILVVDEGEIIER 559 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHH-HHHHHcC--CCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 8999999999999999988777654 4444543 8999999999988888888877877776543
No 46
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.65 E-value=2.1e-15 Score=177.32 Aligned_cols=174 Identities=12% Similarity=0.094 Sum_probs=118.4
Q ss_pred EEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh---------------------hhh
Q psy5289 522 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF---------------------LAQ 580 (813)
Q Consensus 522 l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~---------------------laq 580 (813)
+++++...-+-. .....+.++++|++++|++++|+|||||||||++|.++++.. ..+
T Consensus 342 i~~~~v~~~y~~--~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~ 419 (595)
T 2yl4_A 342 LEFKNVHFAYPA--RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSK 419 (595)
T ss_dssp EEEEEEEEECSS--CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHS
T ss_pred EEEEEEEEEeCC--CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 777665432200 012468999999999999999999999999999999965321 011
Q ss_pred ccccccCCcc--chhH------------------HHHHHHhcCCchhHhh-----------ccchhHHHHHHHHHHHHh-
Q psy5289 581 IGCFVPCDSA--TISV------------------VDQIFTRVGAADSQYR-----------GISTFMMEMKETATVIKK- 628 (813)
Q Consensus 581 ~g~~vpa~~~--~~~~------------------~d~i~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~~- 628 (813)
+ .+||.+.. ..++ +.+.+...++.+.+.. +..++|++++|+..+++.
T Consensus 420 i-~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral 498 (595)
T 2yl4_A 420 I-GTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 498 (595)
T ss_dssp E-EEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHH
T ss_pred e-EEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH
Confidence 2 23443321 0011 2234444554443321 226788888887666665
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCeE
Q psy5289 629 CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNL 701 (813)
Q Consensus 629 ~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~i 701 (813)
+.+|+++||||||+|+|+.....+.. .+..+.+ ++|+|++||+.+....+|++..+.+|++....+.+++
T Consensus 499 ~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 568 (595)
T 2yl4_A 499 LKNPKILLLDEATSALDAENEYLVQE-ALDRLMD--GRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEEL 568 (595)
T ss_dssp HHCCSEEEEECCCSSCCHHHHHHHHH-HHHHHHT--TSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC-
T ss_pred HcCCCEEEEECcccCCCHHHHHHHHH-HHHHHhc--CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 58999999999999999987666644 4555554 7899999999988888998888889888766655544
No 47
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.65 E-value=2e-15 Score=177.16 Aligned_cols=169 Identities=14% Similarity=0.080 Sum_probs=115.3
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh---------------------h
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF---------------------L 578 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~---------------------l 578 (813)
+.+++++....+- .+...+.++++|++++|++++|+|||||||||++|.++++.. .
T Consensus 340 ~~i~~~~v~~~y~---~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b60_A 340 GDLEFRNVTFTYP---GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416 (582)
T ss_dssp CCEEEEEEEECSS---SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CcEEEEEEEEEcC---CCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHH
Confidence 3577776543321 011468899999999999999999999999999999965421 0
Q ss_pred hhccccccCCcc--chhH----------------HHHHHHhcCCchhHhh-----------ccchhHHHHHHHHHHHHh-
Q psy5289 579 AQIGCFVPCDSA--TISV----------------VDQIFTRVGAADSQYR-----------GISTFMMEMKETATVIKK- 628 (813)
Q Consensus 579 aq~g~~vpa~~~--~~~~----------------~d~i~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~~- 628 (813)
.++ .+||.+.. ..++ +.+.+...++.+.+.. +...+|++++|+..+++.
T Consensus 417 ~~i-~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral 495 (582)
T 3b60_A 417 NQV-ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_dssp HTE-EEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred hhC-eEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 112 24444321 0111 2233444555443332 235788888887666665
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEE
Q psy5289 629 CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 629 ~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~ 695 (813)
+.+|+++||||||+|+|+.....+.. .+..+.+ |+|+|++||+.+....+|++..+.+|++...
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 496 LRDSPILILDEATSALDTESERAIQA-ALDELQK--NRTSLVIAHRLSTIEQADEIVVVEDGIIVER 559 (582)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHH-HHHHHHT--TSEEEEECSCGGGTTTCSEEEEEETTEEEEE
T ss_pred HhCCCEEEEECccccCCHHHHHHHHH-HHHHHhC--CCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 58999999999999999988777754 4445553 8999999999888777887777777766543
No 48
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.64 E-value=2.5e-15 Score=176.24 Aligned_cols=170 Identities=17% Similarity=0.175 Sum_probs=115.9
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh---------------------h
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF---------------------L 578 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~---------------------l 578 (813)
+.+++++...-+- .+...+.++++|++++|++++|+|||||||||++|.++.... .
T Consensus 340 ~~i~~~~v~~~y~---~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r 416 (587)
T 3qf4_A 340 GSVSFENVEFRYF---ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416 (587)
T ss_dssp CCEEEEEEEECSS---SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHH
T ss_pred CcEEEEEEEEEcC---CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHH
Confidence 4577776543221 123578899999999999999999999999999999964321 1
Q ss_pred hhccccccCCccc--hhHHHH---------------HHHhcCCchhH-----------hhccchhHHHHHHHHHHHHh-C
Q psy5289 579 AQIGCFVPCDSAT--ISVVDQ---------------IFTRVGAADSQ-----------YRGISTFMMEMKETATVIKK-C 629 (813)
Q Consensus 579 aq~g~~vpa~~~~--~~~~d~---------------i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~~-~ 629 (813)
.++ .+||.+..- -++.+. .....++.+.+ ......+|++++|+..+++. +
T Consensus 417 ~~i-~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 417 GHI-SAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp HHE-EEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred hhe-EEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 122 245543221 112221 22222332222 23345788888887776665 5
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEE
Q psy5289 630 TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 630 ~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~ 696 (813)
.+|+++||||||+|+|+.....+...+ ..+. .|+|+|++||+.+....+|++..+++|++....
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l-~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGL-KRYT--KGCTTFIITQKIPTALLADKILVLHEGKVAGFG 559 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHH-HHHS--TTCEEEEEESCHHHHTTSSEEEEEETTEEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHH-HHhC--CCCEEEEEecChHHHHhCCEEEEEECCEEEEEC
Confidence 899999999999999998877775544 4443 489999999999888888888777777776543
No 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.9e-16 Score=183.48 Aligned_cols=145 Identities=13% Similarity=0.113 Sum_probs=103.5
Q ss_pred eeccccccccCCc-----eeEEEEccCCCChhHHHhhhhhhhhhhh------c-cccccCCcc---ch------------
Q psy5289 540 YIPNDVYFKSGEV-----SFNLVTGPNMGGKSTYIRSIGVSVFLAQ------I-GCFVPCDSA---TI------------ 592 (813)
Q Consensus 540 ~i~n~v~l~~~~g-----~~~~itGpNgsGKSTllr~i~~~~~laq------~-g~~vpa~~~---~~------------ 592 (813)
.+.++++|++..| ++++|+||||||||||+|+++++..... . -.++|.... ..
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~ 440 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRG 440 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhc
Confidence 4567888888777 7799999999999999999976532211 0 012332211 00
Q ss_pred -----hHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCC
Q psy5289 593 -----SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQP 666 (813)
Q Consensus 593 -----~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~ 666 (813)
...+.++..+++.+......+++|++++|...+++. +.+|+++||||||+|+|+.....+.. ++..+..+.|.
T Consensus 441 ~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~-ll~~l~~~~g~ 519 (608)
T 3j16_B 441 QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSK-VIRRFILHNKK 519 (608)
T ss_dssp TTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHH-HHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHhCCC
Confidence 112345566676666677788999999887777765 68999999999999999988777755 45555432589
Q ss_pred EEEEEcCChHHHh-hcCCCC
Q psy5289 667 FTLFATHFHEIAL-LSRVIP 685 (813)
Q Consensus 667 ~~l~~TH~~el~~-~~~~~~ 685 (813)
++|++|||.+++. +++++.
T Consensus 520 tviivtHdl~~~~~~aDrvi 539 (608)
T 3j16_B 520 TAFIVEHDFIMATYLADKVI 539 (608)
T ss_dssp EEEEECSCHHHHHHHCSEEE
T ss_pred EEEEEeCCHHHHHHhCCEEE
Confidence 9999999987765 677653
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.64 E-value=8e-16 Score=180.03 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=106.5
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--h------------ccc-----------------cccCC
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--Q------------IGC-----------------FVPCD 588 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--q------------~g~-----------------~vpa~ 588 (813)
++.++++ .+.+|++++|+||||||||||||+++++.... . .|. ++|..
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~ 184 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence 5777888 78899999999999999999999996542110 0 010 11110
Q ss_pred c--------cc----------hhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhH
Q psy5289 589 S--------AT----------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDG 649 (813)
Q Consensus 589 ~--------~~----------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~ 649 (813)
. .. ...++.++..+|+.+...+..+++|++++|...|++. +.+|+++||||||+|+|+...
T Consensus 185 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~ 264 (607)
T 3bk7_A 185 VDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQR 264 (607)
T ss_dssp GGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHH
T ss_pred hhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 0 00 0124567888898888888899999999887777665 589999999999999999887
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEcCChHHHh-hcCCCCce
Q psy5289 650 FGMACSIARELASHRQPFTLFATHFHEIAL-LSRVIPTF 687 (813)
Q Consensus 650 ~~i~~~i~~~l~~~~~~~~l~~TH~~el~~-~~~~~~~v 687 (813)
..+.. +++.+.+ .|.++|++|||.++.. +++++..+
T Consensus 265 ~~l~~-~L~~l~~-~g~tvIivsHdl~~~~~~adri~vl 301 (607)
T 3bk7_A 265 LKVAR-VIRRLAN-EGKAVLVVEHDLAVLDYLSDVIHVV 301 (607)
T ss_dssp HHHHH-HHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHH-HHHHHHh-cCCEEEEEecChHHHHhhCCEEEEE
Confidence 77744 5666665 4899999999987654 66765444
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.63 E-value=4.6e-16 Score=179.76 Aligned_cols=146 Identities=15% Similarity=0.108 Sum_probs=103.3
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--------hccccccCCcc---chh----------------
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--------QIGCFVPCDSA---TIS---------------- 593 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--------q~g~~vpa~~~---~~~---------------- 593 (813)
.....++++.+|++++|+||||||||||+|+++++.... ..-.++|.... ..+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 362 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTS 362 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTT
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchh
Confidence 344456667889999999999999999999997643211 11122332211 111
Q ss_pred --HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEE
Q psy5289 594 --VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLF 670 (813)
Q Consensus 594 --~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~ 670 (813)
..+.++.++++.+......+++|++++|...|++. +.+|+++||||||+|+|+.....+.. ++..+.++.|.++|+
T Consensus 363 ~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~-~l~~l~~~~g~tvi~ 441 (538)
T 3ozx_A 363 SWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAK-AIKRVTRERKAVTFI 441 (538)
T ss_dssp SHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHhCCCEEEE
Confidence 12344556677766777889999999887777665 68999999999999999988777755 555555436899999
Q ss_pred EcCChHHHh-hcCCCCce
Q psy5289 671 ATHFHEIAL-LSRVIPTF 687 (813)
Q Consensus 671 ~TH~~el~~-~~~~~~~v 687 (813)
+|||.+++. +++++..+
T Consensus 442 vsHdl~~~~~~aDri~vl 459 (538)
T 3ozx_A 442 IDHDLSIHDYIADRIIVF 459 (538)
T ss_dssp ECSCHHHHHHHCSEEEEE
T ss_pred EeCCHHHHHHhCCEEEEE
Confidence 999987765 67776433
No 52
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.63 E-value=1.9e-15 Score=177.69 Aligned_cols=166 Identities=12% Similarity=0.119 Sum_probs=113.1
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh---------------------h
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF---------------------L 578 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~---------------------l 578 (813)
+.+++++....+ .+..++.++++|++++|++++|+|||||||||++|.++++.. .
T Consensus 353 ~~i~~~~v~~~y----~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r 428 (598)
T 3qf4_B 353 GEIEFKNVWFSY----DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLR 428 (598)
T ss_dssp CCEEEEEEECCS----SSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CeEEEEEEEEEC----CCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHH
Confidence 357777654333 123568999999999999999999999999999999865321 0
Q ss_pred hhccccccCCcc--chhHHHHH---------------HHhcCCchhHhh-----------ccchhHHHHHHHHHHHHh-C
Q psy5289 579 AQIGCFVPCDSA--TISVVDQI---------------FTRVGAADSQYR-----------GISTFMMEMKETATVIKK-C 629 (813)
Q Consensus 579 aq~g~~vpa~~~--~~~~~d~i---------------~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~~-~ 629 (813)
.++ .+||.+.. ..++.+.+ ....+..+.+.. +...+|++++|+..+++. +
T Consensus 429 ~~i-~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 429 SSI-GIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp HHE-EEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred hce-EEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 112 24444321 11222222 222233332222 125688888887766665 5
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEE
Q psy5289 630 TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 630 ~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~ 693 (813)
.+|+++||||||+|+|+.....+... +..+. .|+|+|++||+.+....+|++..+++|++.
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~-l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 568 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAA-MWKLM--EGKTSIIIAHRLNTIKNADLIIVLRDGEIV 568 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHH-HHHHH--TTSEEEEESCCTTHHHHCSEEEEECSSSEE
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHH-HHHHc--CCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 89999999999999999887777554 44454 389999999999888888887777776664
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.63 E-value=6.2e-16 Score=180.99 Aligned_cols=146 Identities=12% Similarity=0.074 Sum_probs=103.6
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------hhccccccCCcc---chh-----------------
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------AQIGCFVPCDSA---TIS----------------- 593 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------aq~g~~vpa~~~---~~~----------------- 593 (813)
..+.++|++..|++++|+||||||||||||+++++... ...-.++|.... ..+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 450 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNF 450 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHH
Confidence 45566666788999999999999999999999764321 111123444321 111
Q ss_pred HHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q psy5289 594 VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFAT 672 (813)
Q Consensus 594 ~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~T 672 (813)
.++.++.++++.+...+..+++|++++|...+++. +.+|+++||||||+|+|+.....+.. ++..+.++.|.++|++|
T Consensus 451 ~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vs 529 (607)
T 3bk7_A 451 YKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR-AIRHLMEKNEKTALVVE 529 (607)
T ss_dssp HHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHhCCCEEEEEe
Confidence 12335566777766777788999988887766664 68999999999999999988777755 45555433589999999
Q ss_pred CChHHHh-hcCCCCce
Q psy5289 673 HFHEIAL-LSRVIPTF 687 (813)
Q Consensus 673 H~~el~~-~~~~~~~v 687 (813)
||.+++. +++++..+
T Consensus 530 Hd~~~~~~~adrv~vl 545 (607)
T 3bk7_A 530 HDVLMIDYVSDRLIVF 545 (607)
T ss_dssp SCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHhCCEEEEE
Confidence 9987765 67765433
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.63 E-value=4.8e-16 Score=179.98 Aligned_cols=146 Identities=13% Similarity=0.082 Sum_probs=102.6
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------hhccccccCCcc---chhH----------------
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------AQIGCFVPCDSA---TISV---------------- 594 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------aq~g~~vpa~~~---~~~~---------------- 594 (813)
..+.++|++..|++++|+||||||||||+|+++++... ...-.++|.... ..++
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~ 380 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNF 380 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHH
Confidence 45566666788999999999999999999999765321 111124444321 1111
Q ss_pred -HHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q psy5289 595 -VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFAT 672 (813)
Q Consensus 595 -~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~T 672 (813)
++.++.++++.+...+..+++|++++|...+++. +.+|+++||||||+|+|+.....+.. ++..+.++.|.++|++|
T Consensus 381 ~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~-~l~~l~~~~g~tvi~vs 459 (538)
T 1yqt_A 381 YKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR-AIRHLMEKNEKTALVVE 459 (538)
T ss_dssp HHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEe
Confidence 1234445666666677788999988887776664 68999999999999999988777755 44555432488999999
Q ss_pred CChHHHh-hcCCCCce
Q psy5289 673 HFHEIAL-LSRVIPTF 687 (813)
Q Consensus 673 H~~el~~-~~~~~~~v 687 (813)
||.+++. +++++..+
T Consensus 460 Hd~~~~~~~~drv~vl 475 (538)
T 1yqt_A 460 HDVLMIDYVSDRLMVF 475 (538)
T ss_dssp SCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHhCCEEEEE
Confidence 9977664 77765433
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.62 E-value=8e-16 Score=183.53 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=73.7
Q ss_pred HHhcCCchh-HhhccchhHHHHHHHHHHHHh-CCCCc--EEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC
Q psy5289 599 FTRVGAADS-QYRGISTFMMEMKETATVIKK-CTENS--LVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF 674 (813)
Q Consensus 599 ~~~~~~~d~-~~~~~s~f~~e~~~~~~il~~-~~~~~--LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~ 674 (813)
+.++|+.+. ..+..+++|++++|+..|++. +.+|+ |+||||||+|+|+.....+.. ++..+.+ .|.++|++|||
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~-~l~~l~~-~g~tvi~vtHd 263 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA-TLKSMRD-LGNTLIVVEHD 263 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHH-TTCEEEEECCC
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHH-HHHHHHH-cCCEEEEEeCC
Confidence 344454432 356678899999888777776 46666 999999999999998888755 6666766 58999999999
Q ss_pred hHHHhhcCCCCce------EeeEEEEEE
Q psy5289 675 HEIALLSRVIPTF------RNVQVSALE 696 (813)
Q Consensus 675 ~el~~~~~~~~~v------~~~~~~~~~ 696 (813)
.++...++++..+ .+|++.+..
T Consensus 264 ~~~~~~~d~ii~l~~g~~~~~G~i~~~g 291 (670)
T 3ux8_A 264 EDTMLAADYLIDIGPGAGIHGGEVVAAG 291 (670)
T ss_dssp HHHHHHCSEEEEECSSSGGGCCSEEEEE
T ss_pred HHHHhhCCEEEEecccccccCCEEEEec
Confidence 9988888887666 677776654
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.61 E-value=1.6e-15 Score=181.05 Aligned_cols=89 Identities=16% Similarity=0.107 Sum_probs=69.3
Q ss_pred HhhccchhHHHHHHHHHHHHhC-CC---CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCC
Q psy5289 608 QYRGISTFMMEMKETATVIKKC-TE---NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRV 683 (813)
Q Consensus 608 ~~~~~s~f~~e~~~~~~il~~~-~~---~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~ 683 (813)
.....+++|++++|...|++.. .+ |+|+||||||+|+|+.....+.. ++..+.+ .|.|+|++|||++++..+++
T Consensus 537 ~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~-~l~~l~~-~g~tvi~vtHd~~~~~~~d~ 614 (670)
T 3ux8_A 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRLVD-NGDTVLVIEHNLDVIKTADY 614 (670)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHH-HHHHHHH-TTCEEEEECCCHHHHTTCSE
T ss_pred ccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHH-CCCEEEEEeCCHHHHHhCCE
Confidence 3456688999999887777764 33 57999999999999998888754 5666766 59999999999998888887
Q ss_pred CCce------EeeEEEEEEEC
Q psy5289 684 IPTF------RNVQVSALEQE 698 (813)
Q Consensus 684 ~~~v------~~~~~~~~~~~ 698 (813)
+..+ .+|++.+....
T Consensus 615 i~~l~~~~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 615 IIDLGPEGGDRGGQIVAVGTP 635 (670)
T ss_dssp EEEEESSSGGGCCEEEEEECH
T ss_pred EEEecCCcCCCCCEEEEecCH
Confidence 7666 56777665543
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.60 E-value=2.4e-15 Score=182.03 Aligned_cols=150 Identities=15% Similarity=0.162 Sum_probs=110.8
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh-------hhccccccCCc----cchh-------------
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------AQIGCFVPCDS----ATIS------------- 593 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-------aq~g~~vpa~~----~~~~------------- 593 (813)
...+.++++|++..|++++|+||||||||||||+++.-.+. ..+ .|++... ..++
T Consensus 447 ~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~-~~v~q~~~~~~~~ltv~e~l~~~~~~~~ 525 (986)
T 2iw3_A 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT-VYVEHDIDGTHSDTSVLDFVFESGVGTK 525 (986)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCE-EETTCCCCCCCTTSBHHHHHHTTCSSCH
T ss_pred CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeE-EEEcccccccccCCcHHHHHHHhhcCHH
Confidence 35688999999999999999999999999999999621110 001 2333211 1111
Q ss_pred -HHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEE
Q psy5289 594 -VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLF 670 (813)
Q Consensus 594 -~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~ 670 (813)
.+..++..+|+. +...+..+++|+++++...+++. +.+|+++||||||+|+|+.....+. +.+.+ .|.++|+
T Consensus 526 ~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~----~~L~~-~g~tvIi 600 (986)
T 2iw3_A 526 EAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLV----NYLNT-CGITSIT 600 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHH----HHHHH-SCSEEEE
T ss_pred HHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHH----HHHHh-CCCEEEE
Confidence 234567788884 56777889999999887777665 5899999999999999997655553 33333 4899999
Q ss_pred EcCChHHH-hhcCCCCceEeeEEE
Q psy5289 671 ATHFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 671 ~TH~~el~-~~~~~~~~v~~~~~~ 693 (813)
+||+.++. .+++++..+.+|++.
T Consensus 601 vSHdl~~l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 601 ISHDSVFLDNVCEYIINYEGLKLR 624 (986)
T ss_dssp ECSCHHHHHHHCSEEEEEETTEEE
T ss_pred EECCHHHHHHhCCEEEEEECCeee
Confidence 99997765 578888888888875
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.59 E-value=4.1e-15 Score=173.70 Aligned_cols=146 Identities=15% Similarity=0.098 Sum_probs=103.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh--hc--------------cc-----------------cc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA--QI--------------GC-----------------FV 585 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la--q~--------------g~-----------------~v 585 (813)
.|..+++. ...+|++++|+||||||||||||+++++.... .+ |. +.
T Consensus 91 ~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 169 (608)
T 3j16_B 91 SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIK 169 (608)
T ss_dssp SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhc
Confidence 34444444 35789999999999999999999996542110 00 00 00
Q ss_pred cCCc-----------------------cchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q psy5289 586 PCDS-----------------------ATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELG 641 (813)
Q Consensus 586 pa~~-----------------------~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~ 641 (813)
|... ..-..++.++.++|+.+......+++|++++|...|++. +.+|+++||||||
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPt 249 (608)
T 3j16_B 170 PQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPS 249 (608)
T ss_dssp CCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTT
T ss_pred hhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 0000 000234567888898888888899999999888777765 5899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH-hhcCCCCce
Q psy5289 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA-LLSRVIPTF 687 (813)
Q Consensus 642 ~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v 687 (813)
+|+|+.....+.. +++.+.+ .|.++|++||+.+.. .+++++..+
T Consensus 250 s~LD~~~~~~l~~-~l~~l~~-~g~tvi~vtHdl~~~~~~~drv~vl 294 (608)
T 3j16_B 250 SYLDVKQRLNAAQ-IIRSLLA-PTKYVICVEHDLSVLDYLSDFVCII 294 (608)
T ss_dssp TTCCHHHHHHHHH-HHHGGGT-TTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred cCCCHHHHHHHHH-HHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999988777644 5666665 589999999997665 467765444
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.56 E-value=1.4e-14 Score=167.46 Aligned_cols=136 Identities=16% Similarity=0.118 Sum_probs=97.5
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhhhhhh----------------ccc---------------------cc---cCC-
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ----------------IGC---------------------FV---PCD- 588 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~~laq----------------~g~---------------------~v---pa~- 588 (813)
.+|++++|+||||||||||||+++++..... .|. ++ |..
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFL 102 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhc
Confidence 5799999999999999999999975421000 000 00 000
Q ss_pred ccc----------hhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q psy5289 589 SAT----------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIA 657 (813)
Q Consensus 589 ~~~----------~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~ 657 (813)
... ....+.++..++..+...+..+++|++++|+..|++. +.+|+++||||||+|+|+.....+.. ++
T Consensus 103 ~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~-~l 181 (538)
T 3ozx_A 103 KGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK-AI 181 (538)
T ss_dssp CSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HH
T ss_pred cCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HH
Confidence 000 0123567788888888888899999999988777765 58999999999999999988777744 56
Q ss_pred HHHHhcCCCEEEEEcCChHHH-hhcCCCCceE
Q psy5289 658 RELASHRQPFTLFATHFHEIA-LLSRVIPTFR 688 (813)
Q Consensus 658 ~~l~~~~~~~~l~~TH~~el~-~~~~~~~~v~ 688 (813)
+.+.+ |.++|++||+.+.. .+++++..+.
T Consensus 182 ~~l~~--g~tii~vsHdl~~~~~~~d~i~vl~ 211 (538)
T 3ozx_A 182 RELLK--NKYVIVVDHDLIVLDYLTDLIHIIY 211 (538)
T ss_dssp HHHCT--TSEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHhC--CCEEEEEEeChHHHHhhCCEEEEec
Confidence 66653 89999999997665 4666554443
No 60
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.54 E-value=1.7e-15 Score=149.08 Aligned_cols=135 Identities=12% Similarity=0.022 Sum_probs=79.6
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhhhh-hhh--hccccccCCccchhHHHHH----------HHhcCCchhHhh
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV-FLA--QIGCFVPCDSATISVVDQI----------FTRVGAADSQYR 610 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~-~la--q~g~~vpa~~~~~~~~d~i----------~~~~~~~d~~~~ 610 (813)
+++|++.+|++++|+||||||||||+|++..-. ... .+..+++.......+.... ..+.|... +..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~ 79 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLT-VVD 79 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCE-EEE
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeE-EEE
Confidence 577888899999999999999999999642110 000 0011222222222111111 11222211 111
Q ss_pred ccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhH----------------HHHHHHHHHHHHhcCCCEEEEEcC
Q psy5289 611 GISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDG----------------FGMACSIARELASHRQPFTLFATH 673 (813)
Q Consensus 611 ~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~----------------~~i~~~i~~~l~~~~~~~~l~~TH 673 (813)
.....++++++...+++ .+.+|.+++||||++|+|+... ..+ ..++..+.+ .|.++|++||
T Consensus 80 ~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l-~~~l~~l~~-~g~tvi~vtH 157 (171)
T 4gp7_A 80 ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQM-KKSIKGLQR-EGFRYVYILN 157 (171)
T ss_dssp SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHH-HHHSTTHHH-HTCSEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHh-hhhhhhHHh-cCCcEEEEeC
Confidence 12223566666555554 4689999999999999998732 233 334444555 3899999999
Q ss_pred ChHHHhhc
Q psy5289 674 FHEIALLS 681 (813)
Q Consensus 674 ~~el~~~~ 681 (813)
+.+.+.-.
T Consensus 158 ~~~~~~~~ 165 (171)
T 4gp7_A 158 SPEEVEEV 165 (171)
T ss_dssp SHHHHHHE
T ss_pred CHHHhhhh
Confidence 98877643
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.53 E-value=6.1e-15 Score=178.53 Aligned_cols=93 Identities=12% Similarity=0.080 Sum_probs=70.1
Q ss_pred HHHHHhcCCchh--HhhccchhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q psy5289 596 DQIFTRVGAADS--QYRGISTFMMEMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFAT 672 (813)
Q Consensus 596 d~i~~~~~~~d~--~~~~~s~f~~e~~~~~~il~~-~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~T 672 (813)
..++.++|+.+. .....+++|+|+++...+++. +.+|+|+||||||+|+|+..... +.+.+.+ .+.++|++|
T Consensus 881 ~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~----L~~~L~~-~g~tVIiIS 955 (986)
T 2iw3_A 881 EEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGA----LSKALKE-FEGGVIIIT 955 (986)
T ss_dssp HHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHH----HHHHHHS-CSSEEEEEC
T ss_pred HHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHH----HHHHHHH-hCCEEEEEE
Confidence 446677787653 356678999988887766664 68999999999999999865443 4455555 477999999
Q ss_pred CChHHH-hhcCCCCceEeeEEE
Q psy5289 673 HFHEIA-LLSRVIPTFRNVQVS 693 (813)
Q Consensus 673 H~~el~-~~~~~~~~v~~~~~~ 693 (813)
|+.++. .+++++..+.+|++.
T Consensus 956 HD~e~v~~l~DrVivL~~G~Iv 977 (986)
T 2iw3_A 956 HSAEFTKNLTEEVWAVKDGRMT 977 (986)
T ss_dssp SCHHHHTTTCCEEECCBTTBCC
T ss_pred CCHHHHHHhCCEEEEEECCEEE
Confidence 998876 578877777777664
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.52 E-value=4.2e-14 Score=171.08 Aligned_cols=101 Identities=15% Similarity=0.104 Sum_probs=75.7
Q ss_pred HHHhcCCch-hHhhccchhHHHHHHHHHHHHhC----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q psy5289 598 IFTRVGAAD-SQYRGISTFMMEMKETATVIKKC----TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFAT 672 (813)
Q Consensus 598 i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~~----~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~T 672 (813)
++..+|+.. .+....+++|++++|...+++.. ++|.|+||||||+|+|+.+...+.. ++..+.+ .|.|+|++|
T Consensus 788 ~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~-lL~~L~~-~G~TVIvI~ 865 (916)
T 3pih_A 788 VLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVE-VLHRLVD-RGNTVIVIE 865 (916)
T ss_dssp HHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHH-HHHHHHH-TTCEEEEEC
T ss_pred HHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHh-cCCEEEEEe
Confidence 344555543 23456678999999887777764 3468999999999999999887754 5666766 589999999
Q ss_pred CChHHHhhcCCCCce------EeeEEEEEEECCe
Q psy5289 673 HFHEIALLSRVIPTF------RNVQVSALEQEDN 700 (813)
Q Consensus 673 H~~el~~~~~~~~~v------~~~~~~~~~~~~~ 700 (813)
|++++...+|++..+ .+|++.+....++
T Consensus 866 HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpee 899 (916)
T 3pih_A 866 HNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEE 899 (916)
T ss_dssp CCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred CCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHH
Confidence 999998888887766 6777776655433
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.52 E-value=3.1e-14 Score=170.90 Aligned_cols=97 Identities=10% Similarity=0.040 Sum_probs=73.3
Q ss_pred HHHhcCCch-hHhhccchhHHHHHHHHHHHHhC-C---CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q psy5289 598 IFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-T---ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFAT 672 (813)
Q Consensus 598 i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~~-~---~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~T 672 (813)
++.++|+.. .+....+++|++++|...+++.+ . +|+|+||||||+|+|+.+...+.. ++..+.+ .|.++|++|
T Consensus 713 ~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~-~G~tVIvis 790 (842)
T 2vf7_A 713 TLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQR-QLVKLVD-AGNTVIAVE 790 (842)
T ss_dssp HHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHH-HHHHHHH-TTCEEEEEC
T ss_pred HHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHh-CCCEEEEEc
Confidence 445556554 34566789999999888887765 3 279999999999999998887744 5666766 599999999
Q ss_pred CChHHHhhcCCCCce------EeeEEEEEE
Q psy5289 673 HFHEIALLSRVIPTF------RNVQVSALE 696 (813)
Q Consensus 673 H~~el~~~~~~~~~v------~~~~~~~~~ 696 (813)
|++++...++++..+ .+|++.+..
T Consensus 791 Hdl~~i~~aDrii~L~p~~g~~~G~Iv~~g 820 (842)
T 2vf7_A 791 HKMQVVAASDWVLDIGPGAGEDGGRLVAQG 820 (842)
T ss_dssp CCHHHHTTCSEEEEECSSSGGGCCSEEEEE
T ss_pred CCHHHHHhCCEEEEECCCCCCCCCEEEEEc
Confidence 999888888876656 456555443
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.52 E-value=4.6e-14 Score=170.16 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=67.8
Q ss_pred HHHhcCCch-hHhhccchhHHHHHHHHHHHHhC-C---CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q psy5289 598 IFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-T---ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFAT 672 (813)
Q Consensus 598 i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~~-~---~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~T 672 (813)
++.++|+.. .+....+++|++++|...+++.+ . +|+|+||||||+|+|+.+...+.. ++..+.+ .|.++|++|
T Consensus 846 ~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~-~G~TVIvis 923 (993)
T 2ygr_A 846 TLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN-VINGLVD-KGNTVIVIE 923 (993)
T ss_dssp HHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHH-HHHHHHH-TTCEEEEEC
T ss_pred HHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHh-CCCEEEEEc
Confidence 455666655 45667789999888877776654 3 369999999999999998887754 5566666 589999999
Q ss_pred CChHHHhhcCCCCce
Q psy5289 673 HFHEIALLSRVIPTF 687 (813)
Q Consensus 673 H~~el~~~~~~~~~v 687 (813)
|++++...++++..+
T Consensus 924 Hdl~~i~~aDrIivL 938 (993)
T 2ygr_A 924 HNLDVIKTSDWIIDL 938 (993)
T ss_dssp CCHHHHTTCSEEEEE
T ss_pred CCHHHHHhCCEEEEE
Confidence 999888777776555
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.51 E-value=2.8e-14 Score=171.42 Aligned_cols=88 Identities=15% Similarity=0.090 Sum_probs=68.0
Q ss_pred HHHhcCCch-hHhhccchhHHHHHHHHHHHHhC-C---CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q psy5289 598 IFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-T---ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFAT 672 (813)
Q Consensus 598 i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~~-~---~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~T 672 (813)
++.++|+.. .+.....++|++++|...+++.+ . +|+|+||||||+|+|+.+...+.. ++..+.+ .|.++|++|
T Consensus 828 ~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~-~G~TVIvis 905 (972)
T 2r6f_A 828 TLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRLVD-NGDTVLVIE 905 (972)
T ss_dssp HHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHH-HHHHHHH-TTCEEEEEC
T ss_pred HHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHh-CCCEEEEEc
Confidence 455666655 45667789999888877776653 3 369999999999999998887744 5666766 589999999
Q ss_pred CChHHHhhcCCCCce
Q psy5289 673 HFHEIALLSRVIPTF 687 (813)
Q Consensus 673 H~~el~~~~~~~~~v 687 (813)
|++++...++++..+
T Consensus 906 Hdl~~i~~aDrIivL 920 (972)
T 2r6f_A 906 HNLDVIKTADYIIDL 920 (972)
T ss_dssp CCHHHHTTCSEEEEE
T ss_pred CCHHHHHhCCEEEEE
Confidence 999888777776555
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.47 E-value=1.1e-13 Score=152.68 Aligned_cols=81 Identities=15% Similarity=0.014 Sum_probs=63.5
Q ss_pred ccchhHHHHHHHHHHHHh-C------CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCC
Q psy5289 611 GISTFMMEMKETATVIKK-C------TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRV 683 (813)
Q Consensus 611 ~~s~f~~e~~~~~~il~~-~------~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~ 683 (813)
..+++|+++++...++.. + .+|+++|||||++|+|+.....+.. ++..+.+ .|.++|++||+.++...+++
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~-~l~~l~~-~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS-VLKELER-LNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHH-HHHGGGG-SSSEEEEEESCHHHHTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHh-CCCEEEEEecchHHHHhCCE
Confidence 456788888886665443 2 5999999999999999988777644 5666665 58999999999998888888
Q ss_pred CCceEeeEEE
Q psy5289 684 IPTFRNVQVS 693 (813)
Q Consensus 684 ~~~v~~~~~~ 693 (813)
+..+.+|++.
T Consensus 354 ~~~l~~G~i~ 363 (365)
T 3qf7_A 354 KLRITGGVVV 363 (365)
T ss_dssp EEEEETTEEC
T ss_pred EEEEECCEEE
Confidence 7777777664
No 67
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.47 E-value=8.7e-14 Score=176.44 Aligned_cols=173 Identities=10% Similarity=0.010 Sum_probs=114.4
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh--------------------hh
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--------------------LA 579 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~--------------------la 579 (813)
+.+.+++...-+-. ....++.++++|++.+|++++|+|||||||||+++.+..+.- +.
T Consensus 1029 g~i~~~~v~~~y~~--~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPT--RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp CCEEEEEEEBCCSC--GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHT
T ss_pred CcEEEEEEEEECCC--CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHH
Confidence 34666664332211 012368999999999999999999999999999999864321 01
Q ss_pred hccccccCCcc--chhH-----------------HHHHHHhcCCchhHh-----------hccchhHHHHHHHHHHHHh-
Q psy5289 580 QIGCFVPCDSA--TISV-----------------VDQIFTRVGAADSQY-----------RGISTFMMEMKETATVIKK- 628 (813)
Q Consensus 580 q~g~~vpa~~~--~~~~-----------------~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~~- 628 (813)
+.-.+||.+.. ..++ +.....+.++.+.+. .+-+.+|++++|+..+++.
T Consensus 1107 ~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp TSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred hceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence 11234554431 1111 112223333333222 2235788888887766665
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEE
Q psy5289 629 CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 629 ~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~ 697 (813)
+.+|+++||||||+|+|+.....+.. .++... .|+|+|++||+.+....+|++..+.+|++....+
T Consensus 1187 ~~~p~iLiLDEpTs~lD~~~~~~i~~-~l~~~~--~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~ 1252 (1284)
T 3g5u_A 1187 VRQPHILLLDEATSALDTESEKVVQE-ALDKAR--EGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGT 1252 (1284)
T ss_dssp HHCCSSEEEESCSSSCCHHHHHHHHH-HHHHHS--SSSCEEEECSCTTGGGSCSEEEEEETBEEEEEEC
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHH-HHHHhC--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 58999999999999999987666644 444433 4899999999988888888888888888765543
No 68
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.42 E-value=2.1e-13 Score=153.41 Aligned_cols=113 Identities=20% Similarity=0.176 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHH-hCCCC--cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeE
Q psy5289 615 FMMEMKETATVIK-KCTEN--SLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQ 691 (813)
Q Consensus 615 f~~e~~~~~~il~-~~~~~--~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~ 691 (813)
+|++++++..++. .+.+| +++|||||++|+|+.....+.. ++..+. .|+++|++||+.++...++++..+..
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~-~L~~l~--~~~~vi~itH~~~~~~~~d~i~~l~k-- 370 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLA--DTRQVLVVTHLAQIAARAHHHYKVEK-- 370 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHH-HHHHHT--TTSEEEEECSCHHHHTTCSEEEEEEE--
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHh--CCCEEEEEeCcHHHHhhcCeEEEEEE--
Confidence 4777776554444 45678 9999999999999988777654 444454 38999999999998888776654411
Q ss_pred EEEEEECCeEEEEEEeccCCCCCcHHHHHHHHC-C-CCHHHHHHHHHHH
Q psy5289 692 VSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMA-G-YPEDMLEQARDLM 738 (813)
Q Consensus 692 ~~~~~~~~~i~~~y~l~~G~~~~s~gi~vA~~a-g-~p~~vi~~A~~~~ 738 (813)
...++.+....+...+ .----++|+++ | +.++.++.|++.+
T Consensus 371 ---~~~~G~~~~~~~~l~~---~~~~~ei~~~~~g~~~~~~~~~a~~~~ 413 (415)
T 4aby_A 371 ---QVEDGRTVSHVRLLTG---DERLEEIARMLSGNTSEAALEHARELL 413 (415)
T ss_dssp ---EEETTEEEEEEEECCS---HHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred ---eccCCceEEEEEECCc---hhhHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 1234444333222111 11123577766 4 5677777777654
No 69
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.42 E-value=8.5e-13 Score=167.42 Aligned_cols=172 Identities=13% Similarity=0.064 Sum_probs=114.0
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhh---------------------h
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF---------------------L 578 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~---------------------l 578 (813)
+.|++++...-+-. ....++.++++|++.+|++++|+|||||||||+++.+....- .
T Consensus 386 g~i~~~~v~~~y~~--~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r 463 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPS--RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463 (1284)
T ss_dssp CCEEEEEEEECCSS--TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CeEEEEEEEEEcCC--CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHH
Confidence 35777665432211 112468999999999999999999999999999999854321 0
Q ss_pred hhccccccCCcc--chhHHHH---------------HHHhcCCchhH-----------hhccchhHHHHHHHHHHHHh-C
Q psy5289 579 AQIGCFVPCDSA--TISVVDQ---------------IFTRVGAADSQ-----------YRGISTFMMEMKETATVIKK-C 629 (813)
Q Consensus 579 aq~g~~vpa~~~--~~~~~d~---------------i~~~~~~~d~~-----------~~~~s~f~~e~~~~~~il~~-~ 629 (813)
.++ .+||.+.. .-++.+. .....++.+.+ ..+...+|++++|+..+++. +
T Consensus 464 ~~i-~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 464 EII-GVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp HHE-EEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred hhe-EEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 112 24444321 0112222 22222333222 12335788888887777665 5
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEE
Q psy5289 630 TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 630 ~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~ 697 (813)
.+|+++||||||+++|+.....+ ...++.+. .|+|+|++||+.+....+|++..+.+|++...+.
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~--~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~ 607 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVV-QAALDKAR--EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHH-HHHHHHHH--TTSEEEEECSCHHHHTTCSEEEECSSSCCCCEEC
T ss_pred cCCCEEEEECCCCCCCHHHHHHH-HHHHHHHc--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 89999999999999999765444 44444444 3899999999998888888888888887765443
No 70
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.40 E-value=2.8e-12 Score=163.14 Aligned_cols=175 Identities=12% Similarity=0.069 Sum_probs=119.7
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh---------------------hh
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV---------------------FL 578 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~---------------------~l 578 (813)
+.|.+++...-+-. ....++.+|++|++++|+.++|+||+||||||+++.+.... +.
T Consensus 414 g~I~~~nvsF~Y~~--~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr 491 (1321)
T 4f4c_A 414 GDITVENVHFTYPS--RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR 491 (1321)
T ss_dssp CCEEEEEEEECCSS--STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred CcEEEEEeeeeCCC--CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHh
Confidence 45777776543311 12358999999999999999999999999999999985321 01
Q ss_pred hhccccccCCcc--chhHHH---------------HHHHhcCCchhHhh-----------ccchhHHHHHHHHHHHHh-C
Q psy5289 579 AQIGCFVPCDSA--TISVVD---------------QIFTRVGAADSQYR-----------GISTFMMEMKETATVIKK-C 629 (813)
Q Consensus 579 aq~g~~vpa~~~--~~~~~d---------------~i~~~~~~~d~~~~-----------~~s~f~~e~~~~~~il~~-~ 629 (813)
.++ .+||++.. .-++.+ +.....++.+.+.. +-..+|++++|+..++++ .
T Consensus 492 ~~i-~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~ 570 (1321)
T 4f4c_A 492 KNV-AVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570 (1321)
T ss_dssp HHE-EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred hcc-cccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence 122 34554432 111112 22333333333321 224677888777666665 5
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEECCe
Q psy5289 630 TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDN 700 (813)
Q Consensus 630 ~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~~~ 700 (813)
.+|+++||||||+++|+.....+ ...+..+.+ |+|+|++||.......+|++..+++|++...++.++
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i-~~~l~~~~~--~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIV-QQALDKAAK--GRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHH-HHHHHHHHT--TSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHH
T ss_pred cCCCEEEEecccccCCHHHHHHH-HHHHHHHhC--CCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHH
Confidence 89999999999999999865444 444455553 899999999999989999998899999987776433
No 71
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.35 E-value=3e-12 Score=162.86 Aligned_cols=173 Identities=13% Similarity=0.088 Sum_probs=116.6
Q ss_pred ceEEEEccccCeeEecCCceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh---------------------hh
Q psy5289 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV---------------------FL 578 (813)
Q Consensus 520 ~~l~i~~~rhp~~e~~~~~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~---------------------~l 578 (813)
+.|++++...-+-+ .+..+|.++++|++++|+.++|+||+||||||+++.+..+. +.
T Consensus 1075 g~I~f~nVsf~Y~~--~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPE--RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp CCEEEEEEEECCTT--SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHH
T ss_pred CeEEEEEEEEeCCC--CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHH
Confidence 45777765432211 12246899999999999999999999999999999985321 11
Q ss_pred hhccccccCCccc-------------------hhHHHHHHHhcCCchhHh-----------hccchhHHHHHHHHHHHHh
Q psy5289 579 AQIGCFVPCDSAT-------------------ISVVDQIFTRVGAADSQY-----------RGISTFMMEMKETATVIKK 628 (813)
Q Consensus 579 aq~g~~vpa~~~~-------------------~~~~d~i~~~~~~~d~~~-----------~~~s~f~~e~~~~~~il~~ 628 (813)
.++ ++||++..- -.-+.+.+...++.+.+. .+-+.+|+|.+|+..++++
T Consensus 1153 ~~i-~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1153 SQI-AIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp TTE-EEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred hhe-EEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 122 345554320 011122334444444332 2234688888887776665
Q ss_pred -CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEEEEEEEC
Q psy5289 629 -CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQE 698 (813)
Q Consensus 629 -~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~~~~~~~ 698 (813)
..+|+++||||||+++|+..-..+.. .++.+. .++|+|++||...-...+|++..+++|++...+..
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~-~l~~~~--~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth 1299 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQE-ALDRAR--EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTH 1299 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHH-HHTTTS--SSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECH
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHH-HHHHHc--CCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCH
Confidence 58999999999999999876444422 222222 48999999999888888999988999998877654
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.30 E-value=9.6e-13 Score=130.28 Aligned_cols=125 Identities=14% Similarity=0.046 Sum_probs=74.2
Q ss_pred eEEEEccCCCChhHHHhhhhhhhhhhhccccccCC-----ccchhHH-------HHHHHhcCCc--hhHhhccchhHHHH
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCD-----SATISVV-------DQIFTRVGAA--DSQYRGISTFMMEM 619 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~-----~~~~~~~-------d~i~~~~~~~--d~~~~~~s~f~~e~ 619 (813)
.++|+||||||||||+|.++...-..-.|...... ...+++. +.++.+++.. +........+++++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 58999999999999999997654221122111000 0011100 0011111111 12334456788998
Q ss_pred HHHHHHHH------hCCCCcEEEEeC--CCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcC---ChHHHh-hcCC
Q psy5289 620 KETATVIK------KCTENSLVIIDE--LGRGTSTFDGFGMACSIARELASHRQPFTLFATH---FHEIAL-LSRV 683 (813)
Q Consensus 620 ~~~~~il~------~~~~~~LlllDE--p~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH---~~el~~-~~~~ 683 (813)
++...+++ .+.+|+++|||| |+.|+|+... ..+.+.+.+ .+.++|++|| +.++.. ++++
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~----~~l~~~l~~-~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFR----DLVRQIMHD-PNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHH----HHHHHHHTC-TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHH----HHHHHHHhc-CCCeEEEEEccCCCchHHHHHHhc
Confidence 88777666 378999999999 9999997543 334444544 5777888886 555554 4544
No 73
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.28 E-value=5.2e-12 Score=131.22 Aligned_cols=129 Identities=14% Similarity=0.049 Sum_probs=68.9
Q ss_pred ccCCceeEEEEccCCCChhHHHhhhhhhhh-hh-hccccccCCccchhHHHHHHHhcCCc-hh------------Hhh--
Q psy5289 548 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-LA-QIGCFVPCDSATISVVDQIFTRVGAA-DS------------QYR-- 610 (813)
Q Consensus 548 ~~~~g~~~~itGpNgsGKSTllr~i~~~~~-la-q~g~~vpa~~~~~~~~d~i~~~~~~~-d~------------~~~-- 610 (813)
.+.+|++++|+||||||||||+++++.... .. ..+.++...... ........+++.. +. ...
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 104 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERA-RDLRREMASFGWDFEKYEKEGKIAIVDGVSSVV 104 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH-HHHHHHHHTTTCCHHHHHHTTSEEEEC------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCH-HHHHHHHHHcCCChHHHhhcCCEEEEEcccccc
Confidence 456799999999999999999999984333 11 112222221111 1111112222211 00 000
Q ss_pred ---------ccchh-HHHHHHHHHHHHhCCCCcEEEEeCCCCCCC----hhhHHHHHHHHHHHHHhcCCCEEEEEcCChH
Q psy5289 611 ---------GISTF-MMEMKETATVIKKCTENSLVIIDELGRGTS----TFDGFGMACSIARELASHRQPFTLFATHFHE 676 (813)
Q Consensus 611 ---------~~s~f-~~e~~~~~~il~~~~~~~LlllDEp~~Gtd----~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~e 676 (813)
..+.. ..+..+.........+|+++++|||++++| +.........+++.+.+ .|+++|++||+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii~vtH~~~ 183 (251)
T 2ehv_A 105 GLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTILTTEAPD 183 (251)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC-
T ss_pred ccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCCC
Confidence 00000 111111111111246899999999998875 33444444667777776 5999999999976
Q ss_pred HH
Q psy5289 677 IA 678 (813)
Q Consensus 677 l~ 678 (813)
..
T Consensus 184 ~~ 185 (251)
T 2ehv_A 184 PQ 185 (251)
T ss_dssp --
T ss_pred CC
Confidence 65
No 74
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.28 E-value=5.5e-13 Score=135.34 Aligned_cols=126 Identities=14% Similarity=0.099 Sum_probs=63.6
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhcc------------------ccccCCcc-ch-hHHHHHH
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG------------------CFVPCDSA-TI-SVVDQIF 599 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g------------------~~vpa~~~-~~-~~~d~i~ 599 (813)
.+.+++ .+|++++|+||||||||||||+++++ ... -| .++|.... .+ ......+
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~-~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~ 87 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ-SKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLH 87 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH-TTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHH
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc-CCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHH
Confidence 344554 46899999999999999999999876 321 11 12332210 01 0100001
Q ss_pred HhcCC---chhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChH
Q psy5289 600 TRVGA---ADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHE 676 (813)
Q Consensus 600 ~~~~~---~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~e 676 (813)
..+.. .+.+..-...-.++.++++.+...+.+|+++|||||++| ....+ +.++..+ + .|+++| +|||.+
T Consensus 88 ~~~~~~~~~~~~~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l-~~~l~~l-~-~g~tii-vtHd~~ 159 (208)
T 3b85_A 88 DALRDMVEPEVIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQM-KMFLTRL-G-FGSKMV-VTGDIT 159 (208)
T ss_dssp HHHTTTSCTTHHHHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHH-HHHHTTB-C-TTCEEE-EEEC--
T ss_pred HHHHHhccHHHHHHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHH-HHHHHHh-c-CCCEEE-EECCHH
Confidence 11100 000000000000222333344445689999999999999 22333 3344444 3 488888 999987
Q ss_pred HHh
Q psy5289 677 IAL 679 (813)
Q Consensus 677 l~~ 679 (813)
.+.
T Consensus 160 ~~~ 162 (208)
T 3b85_A 160 QVD 162 (208)
T ss_dssp ---
T ss_pred HHh
Confidence 655
No 75
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.26 E-value=3.5e-13 Score=152.63 Aligned_cols=127 Identities=9% Similarity=0.035 Sum_probs=81.1
Q ss_pred ccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-------------hccccccCCccc------hhHHHH-----
Q psy5289 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------------QIGCFVPCDSAT------ISVVDQ----- 597 (813)
Q Consensus 542 ~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-------------q~g~~vpa~~~~------~~~~d~----- 597 (813)
..+++|++..|++++|+||||||||||+|+++++.... +.-.++|..... +.+.+.
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~ 207 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQS 207 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCB
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccc
Confidence 34788999999999999999999999999997653211 111234443210 111111
Q ss_pred -------------HHHhcCCchhHhhccchhHHHHHHHHHHHH---hCCCCcE----EEEeC-CCCCCChhhHHHHHHHH
Q psy5289 598 -------------IFTRVGAADSQYRGISTFMMEMKETATVIK---KCTENSL----VIIDE-LGRGTSTFDGFGMACSI 656 (813)
Q Consensus 598 -------------i~~~~~~~d~~~~~~s~f~~e~~~~~~il~---~~~~~~L----lllDE-p~~Gtd~~d~~~i~~~i 656 (813)
++..+|..+... ..+++++++|...+++ .+.+|++ +|||| |++|+|+. . ..+
T Consensus 208 ~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~--~---~~l 280 (460)
T 2npi_A 208 LTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN--L---AEL 280 (460)
T ss_dssp CBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS--C---HHH
T ss_pred cccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh--H---HHH
Confidence 122233332222 5677777776554444 4689999 99999 99999987 2 223
Q ss_pred HHHHHhcCCCEEEEEcCChH
Q psy5289 657 ARELASHRQPFTLFATHFHE 676 (813)
Q Consensus 657 ~~~l~~~~~~~~l~~TH~~e 676 (813)
.+.+.+ .+.+++++||+++
T Consensus 281 ~~l~~~-~~~tviiVth~~~ 299 (460)
T 2npi_A 281 HHIIEK-LNVNIMLVLCSET 299 (460)
T ss_dssp HHHHHH-TTCCEEEEECCSS
T ss_pred HHHHHH-hCCCEEEEEccCc
Confidence 333333 5788999999977
No 76
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.26 E-value=1.1e-11 Score=134.65 Aligned_cols=70 Identities=10% Similarity=0.128 Sum_probs=54.4
Q ss_pred cchhHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCC
Q psy5289 612 ISTFMMEMKETATVIKKC-----TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVI 684 (813)
Q Consensus 612 ~s~f~~e~~~~~~il~~~-----~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~ 684 (813)
.+.+|+++++...++... .+|+++|||||++|+|+.....+.. ++..+. .+.++|++||+.++..++++.
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~--~~~~vi~~tH~~~~~~~~d~~ 291 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENS--KHTQFIVITHNKIVMEAADLL 291 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHT--TTSEEEEECCCTTGGGGCSEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhc--CCCeEEEEECCHHHHhhCceE
Confidence 467888888877766653 5789999999999999988777755 445554 378999999998877777753
No 77
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.19 E-value=5.9e-11 Score=129.74 Aligned_cols=72 Identities=14% Similarity=0.077 Sum_probs=53.5
Q ss_pred cchhHHHHHHHH-------HHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCC
Q psy5289 612 ISTFMMEMKETA-------TVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVI 684 (813)
Q Consensus 612 ~s~f~~e~~~~~-------~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~ 684 (813)
.+.+|+++++.. .+...+.+|+++|||||++|+|+.....+.. +++.+.+ .|.++|++||+.++...++++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~-~l~~~~~-~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLK-KIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHH-HHHHTGG-GSSEEEEEESCGGGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHh-cCCEEEEEEChHHHHHhCCEE
Confidence 467888888732 2233357899999999999999988777644 4555554 478999999998887777664
Q ss_pred C
Q psy5289 685 P 685 (813)
Q Consensus 685 ~ 685 (813)
.
T Consensus 324 ~ 324 (339)
T 3qkt_A 324 I 324 (339)
T ss_dssp E
T ss_pred E
Confidence 3
No 78
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.17 E-value=4.1e-11 Score=128.32 Aligned_cols=133 Identities=16% Similarity=0.149 Sum_probs=73.0
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhcc---ccccCCccchhHHHHHHH---hcCCc---------
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG---CFVPCDSATISVVDQIFT---RVGAA--------- 605 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g---~~vpa~~~~~~~~d~i~~---~~~~~--------- 605 (813)
+.+++++.+..|++++|+||||+|||||+++++....... | .++..+...-.+..++.. .....
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~ 102 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREI 102 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCC
Confidence 5678888899999999999999999999999987654331 2 121111100001111110 00000
Q ss_pred ----------hh--------Hhhc-cchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCh---hhH----HHHHHHHHHH
Q psy5289 606 ----------DS--------QYRG-ISTFMMEMKETATVIKKCTENSLVIIDELGRGTST---FDG----FGMACSIARE 659 (813)
Q Consensus 606 ----------d~--------~~~~-~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~---~d~----~~i~~~i~~~ 659 (813)
+. +... ...-..++++.+..+..+.+|++||||||+...+. .+. ..+. ..+..
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~-~~L~~ 181 (296)
T 1cr0_A 103 IENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLM-TKLKG 181 (296)
T ss_dssp HHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHH-HHHHH
Confidence 00 0000 01123455555555556789999999999994432 222 2232 33444
Q ss_pred HHhcCCCEEEEEcCCh
Q psy5289 660 LASHRQPFTLFATHFH 675 (813)
Q Consensus 660 l~~~~~~~~l~~TH~~ 675 (813)
++++.|+++|++||+.
T Consensus 182 la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 182 FAKSTGVVLVVICHLK 197 (296)
T ss_dssp HHHHHCCEEEEEEECC
T ss_pred HHHHhCCeEEEEEecC
Confidence 5443589999999995
No 79
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.15 E-value=1.9e-12 Score=131.34 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=24.0
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
..+++|+ .++.+|++++|+|||||||||++|+++.+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678888 466789999999999999999999997654
No 80
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.13 E-value=1.7e-10 Score=118.13 Aligned_cols=145 Identities=10% Similarity=0.059 Sum_probs=77.1
Q ss_pred cccccc-ccCCceeEEEEccCCCChhHHHhhhhhhhhhhhcc-ccccCCccchhHHHHHHHhcCCc-hhHhh-c------
Q psy5289 542 PNDVYF-KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG-CFVPCDSATISVVDQIFTRVGAA-DSQYR-G------ 611 (813)
Q Consensus 542 ~n~v~l-~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g-~~vpa~~~~~~~~d~i~~~~~~~-d~~~~-~------ 611 (813)
.+++.. ....|++++|+||||||||||+++++......... .++..+...-.+. ..+..++.. +.... .
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 90 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSII-RQAKQFNWDFEEYIEKKLIIIDA 90 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHH-HHHHHTTCCCGGGBTTTEEEEEC
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHH-HHHHHhcchHHHHhhCCEEEEec
Confidence 445554 45678999999999999999999997554322111 1222221111111 112233321 10000 0
Q ss_pred ----------cchhH-HHHHHHHHHHHhCCCCc--EEEEeCCCCCC--ChhhHHHHHHHHHHHHHhcCCCEEEEEcCChH
Q psy5289 612 ----------ISTFM-MEMKETATVIKKCTENS--LVIIDELGRGT--STFDGFGMACSIARELASHRQPFTLFATHFHE 676 (813)
Q Consensus 612 ----------~s~f~-~e~~~~~~il~~~~~~~--LlllDEp~~Gt--d~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~e 676 (813)
....+ .++.+....+....+|+ ++++|||+.+. |+.....+...+.+ +.++.|+++|++||+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~-~~~~~~~~vi~~~h~~~ 169 (235)
T 2w0m_A 91 LMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKR-VLNKWNFTIYATSQYAI 169 (235)
T ss_dssp CC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHH-HHHHTTEEEEEEEC---
T ss_pred cccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHH-HHHhCCCeEEEEeccCc
Confidence 00111 22222222222234788 99999999776 87666666554444 43336899999999972
Q ss_pred ---------HHhhcCCCCceE
Q psy5289 677 ---------IALLSRVIPTFR 688 (813)
Q Consensus 677 ---------l~~~~~~~~~v~ 688 (813)
+..+++.+..+.
T Consensus 170 ~~~~~~~~~~~~~~d~vi~l~ 190 (235)
T 2w0m_A 170 TTSQAFGFGVEHVADGIIRFR 190 (235)
T ss_dssp --------CHHHHCSEEEEEE
T ss_pred ccccccccchheeeeEEEEEE
Confidence 455666554443
No 81
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.06 E-value=1.3e-10 Score=118.92 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=68.0
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhh-hcc------ccccCCcc-chhHHHHHHHhcCCch-hHhhcc---chh-
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIG------CFVPCDSA-TISVVDQIFTRVGAAD-SQYRGI---STF- 615 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~la-q~g------~~vpa~~~-~~~~~d~i~~~~~~~d-~~~~~~---s~f- 615 (813)
+..|++++|+||||||||||+++++...... ..| .++..... ....+..++..++... .+.... ..+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFN 101 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecCC
Confidence 4578999999999999999999997644321 111 12222211 1112334455555431 111111 011
Q ss_pred HHHH----HHHHHHHHh----CCCCcEEEEeCCCCCCChhh------------HHHHHHHHHHHHHhcCCCEEEEEcCCh
Q psy5289 616 MMEM----KETATVIKK----CTENSLVIIDELGRGTSTFD------------GFGMACSIARELASHRQPFTLFATHFH 675 (813)
Q Consensus 616 ~~e~----~~~~~il~~----~~~~~LlllDEp~~Gtd~~d------------~~~i~~~i~~~l~~~~~~~~l~~TH~~ 675 (813)
..+. .++..++.. ..+|+++++|||+.+.++.- ...+...+.+...+ .|+++|++||..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~-~g~tvi~vtH~~ 180 (231)
T 4a74_A 102 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANL-YDIAVFVTNQVQ 180 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHH-HTCEEEEEEECC
T ss_pred hHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHH-CCCeEEEEeecc
Confidence 1111 112222221 45899999999988766521 11333434443333 599999999965
Q ss_pred H
Q psy5289 676 E 676 (813)
Q Consensus 676 e 676 (813)
+
T Consensus 181 ~ 181 (231)
T 4a74_A 181 A 181 (231)
T ss_dssp -
T ss_pred c
Confidence 4
No 82
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.03 E-value=1.8e-10 Score=113.79 Aligned_cols=108 Identities=15% Similarity=0.127 Sum_probs=63.8
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK 628 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~ 628 (813)
...|+.++|+||||+||||++++++...... .|..+- .+.. ..++..+. .....+... .++..
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-~g~~~~----~~~~-~~~~~~~~--~~~~~~~~~---------~~~~~ 97 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYEK-KGIRGY----FFDT-KDLIFRLK--HLMDEGKDT---------KFLKT 97 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHHH-SCCCCC----EEEH-HHHHHHHH--HHHHHTCCS---------HHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHH-cCCeEE----EEEH-HHHHHHHH--HHhcCchHH---------HHHHH
Confidence 3457899999999999999999997654321 221110 0111 11111110 000011000 12223
Q ss_pred CCCCcEEEEeCCCC-CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCCh
Q psy5289 629 CTENSLVIIDELGR-GTSTFDGFGMACSIARELASHRQPFTLFATHFH 675 (813)
Q Consensus 629 ~~~~~LlllDEp~~-Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~ 675 (813)
..++++++||||+. |.|+.....+ ..+++...+ .|+++|++||..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l-~~ll~~~~~-~~~~ii~tsn~~ 143 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELI-SYIITYRYN-NLKSTIITTNYS 143 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHH-HHHHHHHHH-TTCEEEEECCCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHH-HHHHHHHHH-cCCCEEEEcCCC
Confidence 34789999999995 8887665444 556666665 588999999984
No 83
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.03 E-value=4.4e-10 Score=119.24 Aligned_cols=126 Identities=11% Similarity=0.064 Sum_probs=71.0
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhhhhh-----------hccccccCCccchhHHHH---------------HHHhcC
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-----------QIGCFVPCDSATISVVDQ---------------IFTRVG 603 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~~la-----------q~g~~vpa~~~~~~~~d~---------------i~~~~~ 603 (813)
..|++++|+||||+|||||+++++...... ....|+..+...-.+..+ ++.+++
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l~ 107 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLL 107 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCceE
Confidence 468999999999999999999997643211 011233333221111111 112222
Q ss_pred CchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCC--CCChhhH---HHHHHHHHHHHHhcCCCEEEEEcCChHHH
Q psy5289 604 AADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGR--GTSTFDG---FGMACSIARELASHRQPFTLFATHFHEIA 678 (813)
Q Consensus 604 ~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~--Gtd~~d~---~~i~~~i~~~l~~~~~~~~l~~TH~~el~ 678 (813)
+.+........++.++.+... ..+.++++||||||++ +.|..+. ..+.. .+..+.++.|+++|++||+....
T Consensus 108 l~~~~~~~~~~ls~g~~~~i~--~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~-~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 108 IQPLIGSLPNIMAPEWFDGLK--RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIG-RMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp ECCCTTSCCCTTSHHHHHHHH--HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHH-HHHHHHHHHCCEEEEEEEC----
T ss_pred EeecCCCCcccCCHHHHHHHH--HhcCCCCEEEECCHHHhcCCCcCchHHHHHHHH-HHHHHHHHcCCEEEEEecCCCcc
Confidence 222222234455566554433 3345899999999999 8876443 33433 34444333599999999997654
No 84
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.98 E-value=2.5e-11 Score=135.12 Aligned_cols=142 Identities=18% Similarity=0.110 Sum_probs=85.9
Q ss_pred eeeccccccccCCce--------------------eEEEEccCCCChhHHHhhhhhhhhhhh----cc-------ccccC
Q psy5289 539 SYIPNDVYFKSGEVS--------------------FNLVTGPNMGGKSTYIRSIGVSVFLAQ----IG-------CFVPC 587 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~--------------------~~~itGpNgsGKSTllr~i~~~~~laq----~g-------~~vpa 587 (813)
..+.+++++++.+|+ +++|+||||||||||+|+++++..... .+ .+++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 356789999988898 999999999999999999966421110 00 11211
Q ss_pred Cc--c--------ch----hHHHHHHHhcCCchhHhhccchhHHH--HHHH---HHHHHh--------CCCCcEEEEeCC
Q psy5289 588 DS--A--------TI----SVVDQIFTRVGAADSQYRGISTFMME--MKET---ATVIKK--------CTENSLVIIDEL 640 (813)
Q Consensus 588 ~~--~--------~~----~~~d~i~~~~~~~d~~~~~~s~f~~e--~~~~---~~il~~--------~~~~~LlllDEp 640 (813)
.. . .+ ..++.++.+++..+... ... ++++ |++. +.++.. .++|+++++|||
T Consensus 116 ~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~-~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEP 193 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDF-FII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEA 193 (413)
T ss_dssp CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSE-EEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHH
T ss_pred ccccCCeeehHhhcccchHHHHHHHHHHcCCCccCC-eEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcc
Confidence 10 0 00 12456677777554211 111 3333 4433 333333 248899999999
Q ss_pred CCCCChhhHHHHHHHHHHHH----Hhc---CCCEEEEEcCChH---HHhhcC
Q psy5289 641 GRGTSTFDGFGMACSIAREL----ASH---RQPFTLFATHFHE---IALLSR 682 (813)
Q Consensus 641 ~~Gtd~~d~~~i~~~i~~~l----~~~---~~~~~l~~TH~~e---l~~~~~ 682 (813)
++|+|+.....+...+.+.. .+. ...+++++||..+ +..+++
T Consensus 194 tsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d 245 (413)
T 1tq4_A 194 DGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMD 245 (413)
T ss_dssp TTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHH
Confidence 99999998877755444432 221 1356788999854 444444
No 85
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.96 E-value=9.4e-10 Score=127.32 Aligned_cols=137 Identities=12% Similarity=-0.029 Sum_probs=86.7
Q ss_pred ccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccc----cccCCccchhHHHHHHHhcCCc----------hhHhhccc
Q psy5289 548 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC----FVPCDSATISVVDQIFTRVGAA----------DSQYRGIS 613 (813)
Q Consensus 548 ~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~----~vpa~~~~~~~~d~i~~~~~~~----------d~~~~~~s 613 (813)
.+..|++++|+||||+|||||+++++...... |. +++.+.. ..+... ..++|.. +-......
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ee~~-~~l~~~-~~~~g~~~~~~~~~g~~~~~~~~p~ 352 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACAN--KERAILFAYEESR-AQLLRN-AYSWGMDFEEMERQNLLKIVCAYPE 352 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSSCH-HHHHHH-HHTTSCCHHHHHHTTSEEECCCCGG
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEEeCCH-HHHHHH-HHHcCCCHHHHHhCCCEEEEEeccc
Confidence 55679999999999999999999997654332 32 2233221 122221 1233321 11122234
Q ss_pred hhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChh-----hHHHHHHHHHHHHHhcCCCEEEEEcCCh----------HH
Q psy5289 614 TFMMEMKETATVIK-KCTENSLVIIDELGRGTSTF-----DGFGMACSIARELASHRQPFTLFATHFH----------EI 677 (813)
Q Consensus 614 ~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~-----d~~~i~~~i~~~l~~~~~~~~l~~TH~~----------el 677 (813)
.+++++++...+.+ .+.+|+++|+| |++|+|.. ....+ ..++..+++ .|+++|++||+. +.
T Consensus 353 ~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i-~~ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~~ 429 (525)
T 1tf7_A 353 SAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFV-IGVTGYAKQ-EEITGLFTNTSDQFMGAHSITDSH 429 (525)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHH-HHHHHHHHH-TTCEEEEEEECSSSSCCCSSCSSC
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHH-HHHHHHHHh-CCCEEEEEECcccccCcccccCcc
Confidence 56666665544444 46899999999 99999986 44443 557777776 699999999997 33
Q ss_pred -HhhcCCCCceEeeE
Q psy5289 678 -ALLSRVIPTFRNVQ 691 (813)
Q Consensus 678 -~~~~~~~~~v~~~~ 691 (813)
..++|.+..+.++.
T Consensus 430 l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 430 ISTITDTIILLQYVE 444 (525)
T ss_dssp CTTTCSEEEEEEEEE
T ss_pred cceeeeEEEEEEEEE
Confidence 34566665555543
No 86
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.95 E-value=4.7e-11 Score=129.80 Aligned_cols=126 Identities=16% Similarity=0.043 Sum_probs=73.9
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhH-HHH
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFM-MEM 619 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~-~e~ 619 (813)
+++++++.+..|++++|+|||||||||++++++..... ..|...-.....+. ..+ .....+.+. +++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~----------~~~-~~~~i~~~~ggg~ 227 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIV----------FKH-HKNYTQLFFGGNI 227 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCC----------CSS-CSSEEEEECBTTB
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccc----------ccc-chhEEEEEeCCCh
Confidence 67788898888999999999999999999998665322 11211000000000 000 000011110 333
Q ss_pred HHH-HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCce
Q psy5289 620 KET-ATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTF 687 (813)
Q Consensus 620 ~~~-~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v 687 (813)
++. +.+.....+|+++|+|||++ . + + +..++.+.. .+.++|++||..+....++++..+
T Consensus 228 ~~r~~la~aL~~~p~ilildE~~~---~-e---~-~~~l~~~~~-g~~tvi~t~H~~~~~~~~dri~~l 287 (330)
T 2pt7_A 228 TSADCLKSCLRMRPDRIILGELRS---S-E---A-YDFYNVLCS-GHKGTLTTLHAGSSEEAFIRLANM 287 (330)
T ss_dssp CHHHHHHHHTTSCCSEEEECCCCS---T-H---H-HHHHHHHHT-TCCCEEEEEECSSHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhCCCEEEEcCCCh---H-H---H-HHHHHHHhc-CCCEEEEEEcccHHHHHhhhheeh
Confidence 333 33333457999999999964 2 1 2 335555554 345789999998876666654433
No 87
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.93 E-value=3.5e-09 Score=107.45 Aligned_cols=126 Identities=14% Similarity=0.118 Sum_probs=69.6
Q ss_pred ccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCc-cchhHHHHHHHhcCCch-hHhh-----ccchhHHHHH
Q psy5289 548 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS-ATISVVDQIFTRVGAAD-SQYR-----GISTFMMEMK 620 (813)
Q Consensus 548 ~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~-~~~~~~d~i~~~~~~~d-~~~~-----~~s~f~~e~~ 620 (813)
....|++++|+||||+|||||+++++. ....-..++..+. .....+..+....+... .+.. ..+.......
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 356789999999999999999999977 1111112333322 11122233444444311 1111 1122211122
Q ss_pred HHHHHHHhCC-CCcEEEEeCCCCCCChhhH-----HH---HHHHHHHHHHhcCCCEEEEEcCChH
Q psy5289 621 ETATVIKKCT-ENSLVIIDELGRGTSTFDG-----FG---MACSIARELASHRQPFTLFATHFHE 676 (813)
Q Consensus 621 ~~~~il~~~~-~~~LlllDEp~~Gtd~~d~-----~~---i~~~i~~~l~~~~~~~~l~~TH~~e 676 (813)
.++.+...+. ++++||+|||+.+.++... .. +... +..+.++.++++|+++|...
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~-L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQV-LLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHH-HHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHH-HHHHHHHcCCEEEEEeeEEE
Confidence 2333333444 4999999999999887432 12 2222 33343335899999999753
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.92 E-value=1.5e-09 Score=125.66 Aligned_cols=147 Identities=16% Similarity=0.100 Sum_probs=83.7
Q ss_pred eeecccccc-ccCCceeEEEEccCCCChhHHHhhh--hhhhhhhhccccccCCccchhHHHHHHHhcCCc-hhHh-----
Q psy5289 539 SYIPNDVYF-KSGEVSFNLVTGPNMGGKSTYIRSI--GVSVFLAQIGCFVPCDSATISVVDQIFTRVGAA-DSQY----- 609 (813)
Q Consensus 539 ~~i~n~v~l-~~~~g~~~~itGpNgsGKSTllr~i--~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~-d~~~----- 609 (813)
..+.+++++ ++.+|++++|+||||||||||++++ +++........++......... .....++|.. ++..
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~-~~~~~~~g~~~q~~~~~~~l 103 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDI-IKNARSFGWDLAKLVDEGKL 103 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHH-HHHHGGGTCCHHHHHHTTSE
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHH-HHHHHHcCCChHHhhccCcE
Confidence 457889999 8899999999999999999999995 3332211111222221111000 1111122210 0000
Q ss_pred ------------hccchhHHH--HHHHHHHHHhCCCCcEEEEeCCCCCC-----ChhhHHHHHHHHHHHHHhcCCCEEEE
Q psy5289 610 ------------RGISTFMME--MKETATVIKKCTENSLVIIDELGRGT-----STFDGFGMACSIARELASHRQPFTLF 670 (813)
Q Consensus 610 ------------~~~s~f~~e--~~~~~~il~~~~~~~LlllDEp~~Gt-----d~~d~~~i~~~i~~~l~~~~~~~~l~ 670 (813)
.-...+..+ +.+....+. ..++.+|+||||+... |+.....+ ..++..+.+ .|+++|+
T Consensus 104 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS-~g~~~~lilDe~t~~~~~~~lD~~~~~~l-~~ll~~l~~-~g~tvl~ 180 (525)
T 1tf7_A 104 FILDASPDPEGQEVVGGFDLSALIERINYAIQ-KYRARRVSIDSVTSVFQQYDASSVVRREL-FRLVARLKQ-IGATTVM 180 (525)
T ss_dssp EEEECCCCSSCCSCCSSHHHHHHHHHHHHHHH-HHTCSEEEEECSTTTSTTTCCHHHHHHHH-HHHHHHHHH-HTCEEEE
T ss_pred EEEecCcccchhhhhcccCHHHHHHHHHHHHH-HcCCCEEEECCHHHHHHhcCCHHHHHHHH-HHHHHHHHH-CCCEEEE
Confidence 000111111 111222221 2588999999998743 45444444 567777776 5999999
Q ss_pred EcCChHHH----------hhcCCCCceEe
Q psy5289 671 ATHFHEIA----------LLSRVIPTFRN 689 (813)
Q Consensus 671 ~TH~~el~----------~~~~~~~~v~~ 689 (813)
+||+.+.. .++|++..+.+
T Consensus 181 itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 181 TTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp EEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred EecCCCCccccccccceeeeeeEEEEEEE
Confidence 99997652 45787776666
No 89
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.89 E-value=4.4e-10 Score=118.01 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=68.5
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhcccc---------ccCCccchhHHHHHHHhcCCchhHhhc
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCF---------VPCDSATISVVDQIFTRVGAADSQYRG 611 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~---------vpa~~~~~~~~d~i~~~~~~~d~~~~~ 611 (813)
+.++++ ..+|++++|+|||||||||+++.++........|.. ++... ..++.+ ..+|. .
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~--~~~v~q--~~~gl------~ 83 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHK--KSIVNQ--REVGE------D 83 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS--SSEEEE--EEBTT------T
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCc--ceeeeH--HHhCC------C
Confidence 566777 567899999999999999999999765432212211 11100 000000 01111 1
Q ss_pred cchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCC
Q psy5289 612 ISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRV 683 (813)
Q Consensus 612 ~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~ 683 (813)
..+|. .-++.++. .+|+++++|||+ |+... +.+++.. + .|.+++++||+.+....+++
T Consensus 84 ~~~l~---~~la~aL~--~~p~illlDEp~---D~~~~----~~~l~~~-~-~g~~vl~t~H~~~~~~~~dr 141 (261)
T 2eyu_A 84 TKSFA---DALRAALR--EDPDVIFVGEMR---DLETV----ETALRAA-E-TGHLVFGTLHTNTAIDTIHR 141 (261)
T ss_dssp BSCHH---HHHHHHHH--HCCSEEEESCCC---SHHHH----HHHHHHH-H-TTCEEEEEECCSSHHHHHHH
T ss_pred HHHHH---HHHHHHHh--hCCCEEEeCCCC---CHHHH----HHHHHHH-c-cCCEEEEEeCcchHHHHHHH
Confidence 12341 22333343 489999999995 65442 2334443 3 58999999999876665554
No 90
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.88 E-value=2.9e-10 Score=124.18 Aligned_cols=146 Identities=10% Similarity=0.067 Sum_probs=89.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-----hcc-----------c-----------cccCC-cc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-----QIG-----------C-----------FVPCD-SA 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-----q~g-----------~-----------~vpa~-~~ 590 (813)
..+.+++ |.+.+|++++|+||||+||||||++|+...-.. -+| . +++.. ..
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~ 137 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRP 137 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSC
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCC
Confidence 3467788 999999999999999999999999996542100 001 0 00000 00
Q ss_pred chhHHHHHHHhcCCchh----------HhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHH
Q psy5289 591 TISVVDQIFTRVGAADS----------QYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAREL 660 (813)
Q Consensus 591 ~~~~~d~i~~~~~~~d~----------~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l 660 (813)
....+...+..++..+. +....+.|+.++++++.+ +.+|++ ++|.|+.....+ +.+++.+
T Consensus 138 ~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la---l~~p~~------t~Gldp~~~~~l-~~ller~ 207 (347)
T 2obl_A 138 ALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA---SGEPDV------RGGFPPSVFSSL-PKLLERA 207 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH---TTCCCC------BTTBCHHHHHHH-HHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH---cCCCCc------ccCCCHHHHHHH-HHHHHHH
Confidence 00001111111111111 013467788888666555 455554 899999765555 5566666
Q ss_pred Hh-cCCC-----EEEEEcCChHHHhhcCCCCceEeeEEEEEE
Q psy5289 661 AS-HRQP-----FTLFATHFHEIALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 661 ~~-~~~~-----~~l~~TH~~el~~~~~~~~~v~~~~~~~~~ 696 (813)
.+ +.|. +++++|||++ ..+++++..+.+|++....
T Consensus 208 ~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~ 248 (347)
T 2obl_A 208 GPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTR 248 (347)
T ss_dssp EECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCH
T ss_pred hCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeC
Confidence 53 2476 8899999988 6677887888899887544
No 91
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.79 E-value=6.8e-09 Score=111.20 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=28.1
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+++|+..+|++++|+|||||||||+++.++..
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 46677778999999999999999999999754
No 92
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.79 E-value=1.2e-09 Score=113.68 Aligned_cols=38 Identities=29% Similarity=0.259 Sum_probs=24.3
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
...+.++++|+..+|.+++|+|||||||||++|.++..
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999999999999999999998653
No 93
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.77 E-value=1.3e-08 Score=104.97 Aligned_cols=127 Identities=11% Similarity=0.035 Sum_probs=65.1
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhhh------cc-ccccCCcc-chhHHHHHHHhcCCch-hHhhcc---chhH
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ------IG-CFVPCDSA-TISVVDQIFTRVGAAD-SQYRGI---STFM 616 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~laq------~g-~~vpa~~~-~~~~~d~i~~~~~~~d-~~~~~~---s~f~ 616 (813)
+..|++++|+||||+|||||+++++....+.. .| .++..+.. ....+..+..+++... .+.... ..+.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 35689999999999999999999987543321 11 22322221 1122233455555421 111111 1111
Q ss_pred -HHHHHH-HHHHHh--CCCCcEEEEeCCCCCCChh-------h-----HHHHHHHHHHHHHhcCCCEEEEEcCChH
Q psy5289 617 -MEMKET-ATVIKK--CTENSLVIIDELGRGTSTF-------D-----GFGMACSIARELASHRQPFTLFATHFHE 676 (813)
Q Consensus 617 -~e~~~~-~~il~~--~~~~~LlllDEp~~Gtd~~-------d-----~~~i~~~i~~~l~~~~~~~~l~~TH~~e 676 (813)
.+..+. ..+... ..++++|++|||+.+.++. . ...+...+.+...+ .|+++|+++|...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~-~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADE-FGVAVVITNQVVA 175 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHH-HCCEEEEEC----
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH-cCCEEEEEeeeee
Confidence 122111 112221 2579999999999988763 1 12232333333333 5899999999754
No 94
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.76 E-value=1.2e-08 Score=111.82 Aligned_cols=130 Identities=13% Similarity=0.043 Sum_probs=71.3
Q ss_pred ccccCCceeEEEEccCCCChhHHHhhhhhhhhhh-hc----c--ccccCCcc-chhHHHHHHHhcCCc-----hhHhhcc
Q psy5289 546 YFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QI----G--CFVPCDSA-TISVVDQIFTRVGAA-----DSQYRGI 612 (813)
Q Consensus 546 ~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~la-q~----g--~~vpa~~~-~~~~~d~i~~~~~~~-----d~~~~~~ 612 (813)
.+.+..|+++.|+||||||||||+++++...... .. | .|+-.... ....+..++.+.+.. +++.-..
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~ 204 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVAR 204 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEE
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEe
Confidence 3566789999999999999999999998765221 11 2 23332221 111222344444432 1111111
Q ss_pred chhHHHHHHHHHHHH----hC----CCCcEEEEeCCCCCCChhh------------HHHHHHHHHHHHHhcCCCEEEEEc
Q psy5289 613 STFMMEMKETATVIK----KC----TENSLVIIDELGRGTSTFD------------GFGMACSIARELASHRQPFTLFAT 672 (813)
Q Consensus 613 s~f~~e~~~~~~il~----~~----~~~~LlllDEp~~Gtd~~d------------~~~i~~~i~~~l~~~~~~~~l~~T 672 (813)
..-+.++.++..++. .. .+|++||+|||++++|+.. ...+.. .+..+.++.++++|+++
T Consensus 205 ~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~-~L~~la~~~~~tvii~~ 283 (349)
T 1pzn_A 205 AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLA-DLHRLANLYDIAVFVTN 283 (349)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHH-HHHHHHHHTTCEEEEEE
T ss_pred cCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHH-HHHHHHHHcCcEEEEEc
Confidence 111223333222222 22 6899999999999987741 112222 22333333689999999
Q ss_pred CChH
Q psy5289 673 HFHE 676 (813)
Q Consensus 673 H~~e 676 (813)
|...
T Consensus 284 h~~~ 287 (349)
T 1pzn_A 284 QVQA 287 (349)
T ss_dssp ECC-
T ss_pred cccc
Confidence 9854
No 95
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.75 E-value=1.4e-08 Score=110.96 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=28.1
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.++|+..+|++++|+|||||||||+++.++..
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 56677788999999999999999999999754
No 96
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.73 E-value=5.2e-09 Score=114.59 Aligned_cols=119 Identities=14% Similarity=0.076 Sum_probs=63.5
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccC-CccchhHHHHHHHhcC-Cch-hHhhccchhHHHHHHHHHH
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC-DSATISVVDQIFTRVG-AAD-SQYRGISTFMMEMKETATV 625 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa-~~~~~~~~d~i~~~~~-~~d-~~~~~~s~f~~e~~~~~~i 625 (813)
..++.+++|+|||||||||+|++++........|..+-. +..+... . ...+ ..+ ......-+|.. +..
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~-~---~~~~~v~q~~~~~~~~~~~~-----~La 190 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVH-E---SKKCLVNQREVHRDTLGFSE-----ALR 190 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-C---CSSSEEEEEEBTTTBSCHHH-----HHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhh-h---ccccceeeeeeccccCCHHH-----HHH
Confidence 355679999999999999999998654432211211100 0000000 0 0000 000 00111112222 222
Q ss_pred HHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCC
Q psy5289 626 IKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIP 685 (813)
Q Consensus 626 l~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~ 685 (813)
.....+|+++++||| +|... +..+++ +.+ .|.++|++||+.+....++++.
T Consensus 191 ~aL~~~PdvillDEp---~d~e~----~~~~~~-~~~-~G~~vl~t~H~~~~~~~~dRli 241 (356)
T 3jvv_A 191 SALREDPDIILVGEM---RDLET----IRLALT-AAE-TGHLVFGTLHTTSAAKTIDRVV 241 (356)
T ss_dssp HHTTSCCSEEEESCC---CSHHH----HHHHHH-HHH-TTCEEEEEESCSSHHHHHHHHH
T ss_pred HHhhhCcCEEecCCC---CCHHH----HHHHHH-HHh-cCCEEEEEEccChHHHHHHHHh
Confidence 223479999999999 45432 232333 344 5899999999987776665543
No 97
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.73 E-value=1.4e-08 Score=97.11 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=56.2
Q ss_pred CceeEEEEccCCCChhHHHhhhhhhhhhhhcc---ccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHH
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG---CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK 627 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~~~laq~g---~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~ 627 (813)
.|+.++|+||||+||||+++.++...... | .++++....-. .
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~--g~~~~~~~~~~~~~~---------------------------------~ 79 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA--GKNAAYIDAASMPLT---------------------------------D 79 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT--TCCEEEEETTTSCCC---------------------------------G
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEcHHHhhHH---------------------------------H
Confidence 57899999999999999999997655321 2 12222111000 1
Q ss_pred hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCE-EEEEcCC
Q psy5289 628 KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPF-TLFATHF 674 (813)
Q Consensus 628 ~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~-~l~~TH~ 674 (813)
...++++++||||+...+ .+ ......+++.+.+ .|.+ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~~~~-~~-~~~l~~li~~~~~-~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEKLGN-EE-QALLFSIFNRFRN-SGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTCCCS-HH-HHHHHHHHHHHHH-HTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccccCh-HH-HHHHHHHHHHHHH-cCCcEEEEECCC
Confidence 134689999999988444 33 3334556666665 4666 8888885
No 98
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.66 E-value=1.6e-09 Score=116.72 Aligned_cols=118 Identities=15% Similarity=0.081 Sum_probs=66.4
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhh----hccccccCCccch----------------------hHHHHHHHhc
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----QIGCFVPCDSATI----------------------SVVDQIFTRV 602 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~la----q~g~~vpa~~~~~----------------------~~~d~i~~~~ 602 (813)
..+|++++|+||||||||||+|.++.+.... ++ .+++.+.... ..+..++..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v-~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l 165 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRV-DLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSV 165 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCE-EEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeE-EEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 4678999999999999999999997643211 11 1222221111 1122233333
Q ss_pred CCchhHhhccchhHHHHHHHHHHH-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH
Q psy5289 603 GAADSQYRGISTFMMEMKETATVI-KKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA 678 (813)
Q Consensus 603 ~~~d~~~~~~s~f~~e~~~~~~il-~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~ 678 (813)
+ ..........|++++++...+. ..+.+|++||+|||+.+.|+.. ..+.+..+ .+|+++|+.++.
T Consensus 166 ~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~---------~~l~~~~D-~~I~V~a~~~~~ 231 (312)
T 3aez_A 166 K-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT---------LMVSDLFD-FSLYVDARIEDI 231 (312)
T ss_dssp H-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS---------CCGGGGCS-EEEEEEECHHHH
T ss_pred C-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch---------HHHHHhcC-cEEEEECCHHHH
Confidence 3 1111123445666666543332 2357899999999999886422 01222223 457788887653
No 99
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.65 E-value=7.6e-10 Score=118.23 Aligned_cols=127 Identities=9% Similarity=-0.063 Sum_probs=79.7
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCcc---------chh-------HHHHHHHhcC
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSA---------TIS-------VVDQIFTRVG 603 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~---------~~~-------~~d~i~~~~~ 603 (813)
.+.++++|++++|++++|+||||||||||+++++.+. -..+-.++|.... .+. .....+..+
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~~~~~~~i~~~- 191 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTY- 191 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGGTTSGGGGGGGTTCSCEEEEEECHHHHHHHHHT-
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEecCccccccccHHHHhhccCccccHHHHHHHHHH-
Confidence 4788999999999999999999999999999997653 1111122322110 010 112222221
Q ss_pred CchhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCC
Q psy5289 604 AADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRV 683 (813)
Q Consensus 604 ~~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~ 683 (813)
+.+.+. ...+|++++++ +...+.+|+++| |+++|+.....+. . .||+.+....+++
T Consensus 192 L~~gld--g~~LSgGqkQR--ARAll~~p~iLl----Ts~LD~~~~~~i~--------~--------ltH~~~~~~~aD~ 247 (305)
T 2v9p_A 192 LRNALD--GYPVSIDRKHK--AAVQIKAPPLLV----TSNIDVQAEDRYL--------Y--------LHSRVQTFRFEQP 247 (305)
T ss_dssp TTGGGG--TCCEECCCSSC--CCCEECCCCEEE----EESSCSTTCGGGG--------G--------GTTTEEEEECCCC
T ss_pred hHccCC--ccCcCHHHHHH--HHHHhCCCCEEE----ECCCCHHHHHHHH--------H--------HhCCHHHHHhCCE
Confidence 122222 35678888887 444468999999 9999987654442 1 1898877777888
Q ss_pred CCceEeeEEE
Q psy5289 684 IPTFRNVQVS 693 (813)
Q Consensus 684 ~~~v~~~~~~ 693 (813)
+ .+.+|++.
T Consensus 248 i-vl~~G~iv 256 (305)
T 2v9p_A 248 C-TDESGEQP 256 (305)
T ss_dssp C-CCC---CC
T ss_pred E-EEeCCEEE
Confidence 8 77776553
No 100
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.62 E-value=1.4e-09 Score=108.48 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.9
Q ss_pred ceeEEEEccCCCChhHHHhhhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVSVF 577 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~~~ 577 (813)
|++++|+|||||||||+++.++....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 57899999999999999999977653
No 101
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.62 E-value=1.3e-09 Score=111.32 Aligned_cols=136 Identities=7% Similarity=-0.087 Sum_probs=68.4
Q ss_pred ccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhhc--cccc----cC--Cccchh-------HHHHHHH------
Q psy5289 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQI--GCFV----PC--DSATIS-------VVDQIFT------ 600 (813)
Q Consensus 542 ~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~--g~~v----pa--~~~~~~-------~~d~i~~------ 600 (813)
.++++|++.+|++++|+|||||||||++|.++.... ..+ |..+ |. ....++ .+.....
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 91 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLE 91 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHST-TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhh
Confidence 668999999999999999999999999999976542 111 1000 00 000011 1111100
Q ss_pred -------hcCCch-----hHhhc-----cchhHHHHHHHHHH-----H-HhCCCCcEEEEeCCCCCCChhhHHHHHHHHH
Q psy5289 601 -------RVGAAD-----SQYRG-----ISTFMMEMKETATV-----I-KKCTENSLVIIDELGRGTSTFDGFGMACSIA 657 (813)
Q Consensus 601 -------~~~~~d-----~~~~~-----~s~f~~e~~~~~~i-----l-~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~ 657 (813)
..|... -+..+ ...+++++++...+ + ..+.+|++++||||+++.|......+...+.
T Consensus 92 ~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~ 171 (218)
T 1z6g_A 92 YDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRME 171 (218)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred hhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 001100 00000 12345666655444 1 1235788899999999988766555544443
Q ss_pred HHHHh-----cCCCEEEEEcCChHHH
Q psy5289 658 RELAS-----HRQPFTLFATHFHEIA 678 (813)
Q Consensus 658 ~~l~~-----~~~~~~l~~TH~~el~ 678 (813)
+...+ -.++..++++|+.+.+
T Consensus 172 ~~~~~~~~~h~~~~d~iiv~~~~~ea 197 (218)
T 1z6g_A 172 QLNIELHEANLLNFNLSIINDDLTLT 197 (218)
T ss_dssp HHHHHHHHHTTSCCSEEEECSSHHHH
T ss_pred HHHHHHHhhcccCCCEEEECCCHHHH
Confidence 32211 0367889999996544
No 102
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.61 E-value=1.3e-08 Score=114.50 Aligned_cols=146 Identities=10% Similarity=-0.003 Sum_probs=90.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhhhh----------------------------hhccccccCCcc
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------------------------AQIGCFVPCDSA 590 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~l----------------------------aq~g~~vpa~~~ 590 (813)
..+.+++ |++.+|++++|+|||||||||||++|+...-. ...-.+++....
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~ 223 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADV 223 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTS
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCC
Confidence 3578889 99999999999999999999999999654210 000123332111
Q ss_pred ----chhHHHHH------HHhcCC-chhHhhccchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHH
Q psy5289 591 ----TISVVDQI------FTRVGA-ADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARE 659 (813)
Q Consensus 591 ----~~~~~d~i------~~~~~~-~d~~~~~~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~ 659 (813)
.+...+.+ +...+. -..+....+.|+.++++++.+ +.+|++ ++|+|+.....+ ..+++.
T Consensus 224 ~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~~p~~------t~glD~~~~~~l-~~ll~r 293 (438)
T 2dpy_A 224 SPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IGEPPA------TKGYPPSVFAKL-PALVER 293 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TTCCCC------SSSCCTTHHHHH-HHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hCCCcc------cccCCHHHHHHH-HHHHHH
Confidence 11111111 111110 011223356788888666555 556665 999999766655 445555
Q ss_pred HHh---cCCC-----EEEEEcCChHHHhhcCCCCceEeeEEEEEE
Q psy5289 660 LAS---HRQP-----FTLFATHFHEIALLSRVIPTFRNVQVSALE 696 (813)
Q Consensus 660 l~~---~~~~-----~~l~~TH~~el~~~~~~~~~v~~~~~~~~~ 696 (813)
+.+ +.|. +++++|||++ ..+++++..+.+|++....
T Consensus 294 ~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 294 AGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp CSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred HHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 543 1254 8999999988 6677777778888886543
No 103
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.61 E-value=6.3e-08 Score=92.37 Aligned_cols=77 Identities=14% Similarity=0.072 Sum_probs=58.0
Q ss_pred hhccchhHHHHHHHHHHH-------HhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhc
Q psy5289 609 YRGISTFMMEMKETATVI-------KKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLS 681 (813)
Q Consensus 609 ~~~~s~f~~e~~~~~~il-------~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~ 681 (813)
....+++|+|+++...++ ..+.+|+++|||||++|+|+.....+.. ++..+.+ .|.++|++||+.++..++
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~-~~~tiiivsH~~~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLK-KIPQVILVSHDEELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHH-HHHHTGG-GSSEEEEEESCGGGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHH-HHHHHHc-cCCEEEEEEChHHHHHhC
Confidence 455678899988876553 2357899999999999999987766644 4555554 478999999999877777
Q ss_pred CCCCce
Q psy5289 682 RVIPTF 687 (813)
Q Consensus 682 ~~~~~v 687 (813)
+++..+
T Consensus 130 d~ii~l 135 (148)
T 1f2t_B 130 DHVIRI 135 (148)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 765444
No 104
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.52 E-value=2.9e-10 Score=115.19 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=23.0
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.+|++++|+|||||||||++|.++..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999999764
No 105
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.50 E-value=3.7e-08 Score=103.78 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=28.0
Q ss_pred CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChH
Q psy5289 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHE 676 (813)
Q Consensus 632 ~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~e 676 (813)
..|++||||+.|+++.| ..+++.+.+ . .++|++.|-.+
T Consensus 114 ~~lllldep~~gL~~lD-----~~~l~~L~~-~-~~vI~Vi~K~D 151 (270)
T 3sop_A 114 CCLYFISPTGHSLRPLD-----LEFMKHLSK-V-VNIIPVIAKAD 151 (270)
T ss_dssp EEEEEECCCSSSCCHHH-----HHHHHHHHT-T-SEEEEEETTGG
T ss_pred eeeEEEecCCCcCCHHH-----HHHHHHHHh-c-CcEEEEEeccc
Confidence 35999999999999988 335566766 3 67777766543
No 106
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.41 E-value=1.2e-07 Score=96.75 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.6
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
.+|++++|+||||||||||+|.++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999999987654
No 107
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.41 E-value=4.8e-07 Score=100.45 Aligned_cols=126 Identities=14% Similarity=0.111 Sum_probs=66.3
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhhh-cc------ccccCCc-cchhHHHHHHHhcCCc-hhHhhcc---chh-
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IG------CFVPCDS-ATISVVDQIFTRVGAA-DSQYRGI---STF- 615 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-~g------~~vpa~~-~~~~~~d~i~~~~~~~-d~~~~~~---s~f- 615 (813)
+..|++++|+||||||||||+++++....... .| .|+..+. .....+..+..++|.. +.+.... ..+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence 45789999999999999999998765443321 11 1222221 1112233455666643 2111111 011
Q ss_pred HHHHH-HHHHHHH--hCCCCcEEEEeCCCCCCChhhH------------HHHHHHHHHHHHhcCCCEEEEEcCCh
Q psy5289 616 MMEMK-ETATVIK--KCTENSLVIIDELGRGTSTFDG------------FGMACSIARELASHRQPFTLFATHFH 675 (813)
Q Consensus 616 ~~e~~-~~~~il~--~~~~~~LlllDEp~~Gtd~~d~------------~~i~~~i~~~l~~~~~~~~l~~TH~~ 675 (813)
..+.. .+..+.. ...++++|++|||+...++.-. ..+.. .+..+.++.|+++|++||..
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~-~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMR-ALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHH-HHHHHHHHHCCEEEEEEEC-
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHH-HHHHHHHHcCCEEEEEEeec
Confidence 11111 1111222 1257999999999887764211 12222 33344444699999999983
No 108
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.40 E-value=2.9e-07 Score=101.52 Aligned_cols=117 Identities=14% Similarity=0.088 Sum_probs=62.7
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhhhccccccC-CccchhHHHHHHHhcC-Cch-hHhhccchhHHHHHHHHHH
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC-DSATISVVDQIFTRVG-AAD-SQYRGISTFMMEMKETATV 625 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa-~~~~~~~~d~i~~~~~-~~d-~~~~~~s~f~~e~~~~~~i 625 (813)
..+|++++|+|||||||||+++.++........|..+-. +..+... -..++ ..+ .+......|... ++..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~----~~~~~~v~Q~~~g~~~~~~~~~---l~~~ 205 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFADA---LRAA 205 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCSHHH---HHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhh----ccCceEEEeeecCCCHHHHHHH---HHHH
Confidence 467899999999999999999998765432212211100 0000000 00011 000 000112344321 1222
Q ss_pred HHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCC
Q psy5289 626 IKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRV 683 (813)
Q Consensus 626 l~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~ 683 (813)
...+|+++++|||+ |+.. + +.+++.. . .|.+++.++|+.+....+++
T Consensus 206 --L~~~pd~illdE~~---d~e~---~-~~~l~~~-~-~g~~vi~t~H~~~~~~~~~r 252 (372)
T 2ewv_A 206 --LREDPDVIFVGEMR---DLET---V-ETALRAA-E-TGHLVFGTLHTNTAIDTIHR 252 (372)
T ss_dssp --TTSCCSEEEESCCC---SHHH---H-HHHHHHH-T-TTCEEEECCCCCSHHHHHHH
T ss_pred --hhhCcCEEEECCCC---CHHH---H-HHHHHHH-h-cCCEEEEEECcchHHHHHHH
Confidence 23589999999994 5543 2 2334433 3 58899999998765554443
No 109
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.35 E-value=1.1e-07 Score=111.70 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=34.7
Q ss_pred CCCcEEEEeCC------CCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH
Q psy5289 630 TENSLVIIDEL------GRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA 678 (813)
Q Consensus 630 ~~~~LlllDEp------~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~ 678 (813)
..|+|+|+||| ++|+|+.....+...+.+++.+..+.+++++||+.+++
T Consensus 145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 145 DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 46899999999 89999876666644444445544467788899997643
No 110
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.35 E-value=1.4e-06 Score=89.69 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=66.7
Q ss_pred ccCCceeEEEEccCCCChhHHHhhhhhhhhhhh-ccccccCCccchhHHHHHHHhcCCc-hhHh-h--------------
Q psy5289 548 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IGCFVPCDSATISVVDQIFTRVGAA-DSQY-R-------------- 610 (813)
Q Consensus 548 ~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-~g~~vpa~~~~~~~~d~i~~~~~~~-d~~~-~-------------- 610 (813)
....|++++|+||||+|||||+.+++....... -..++..+...-.+.. .+.++|.. +... .
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~-~~~~~g~~~~~~~~~~~l~~~~~~~~~~~ 97 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQ-NMAQFGWDVKPYEEKGMFAMVDAFTAGIG 97 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHH-HHHTTTCCCHHHHHHTSEEEEECSTTTTC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHH-HHHHcCCCHHHHhhCCcEEEEecchhhcc
Confidence 345789999999999999999887754433221 1122222221111111 12233321 0000 0
Q ss_pred -----------ccchhHHH-HHHHHHHHHhCCCCcEEEEeCCCCCC--ChhhHHHHHHHHHHHHHhcCCCEEEEEcCChH
Q psy5289 611 -----------GISTFMME-MKETATVIKKCTENSLVIIDELGRGT--STFDGFGMACSIARELASHRQPFTLFATHFHE 676 (813)
Q Consensus 611 -----------~~s~f~~e-~~~~~~il~~~~~~~LlllDEp~~Gt--d~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~e 676 (813)
..... .+ ..++..++.. .+++++++|+|+... |+.........+.+.+.+ .|+++++++|...
T Consensus 98 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~-~~~~vi~~~h~~~ 174 (247)
T 2dr3_A 98 KSKEYEKYIVHDLTDI-REFIEVLRQAIRD-INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAG-TGCTSIFVSQVSV 174 (247)
T ss_dssp C--CCCSCBCSCCSSH-HHHHHHHHHHHHH-HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHH-TTCEEEEEEECC-
T ss_pred cccccccccccCccCH-HHHHHHHHHHHHH-hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 00010 11 1222222222 468999999998876 343344555556665555 6999999999854
No 111
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.34 E-value=5.6e-07 Score=108.50 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=77.8
Q ss_pred HHhcCCch-hHhhccchhHHHHHHHHHHHHhC-CC--CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC
Q psy5289 599 FTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TE--NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF 674 (813)
Q Consensus 599 ~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~~-~~--~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~ 674 (813)
+..+|+.. .+.+..+++|++++|+..++... .+ +.|+|||||++|+|+.+...+ ..+++.|.+ .|.++|++||+
T Consensus 488 L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L-~~~L~~Lr~-~G~TVIvVeHd 565 (972)
T 2r6f_A 488 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRL-IATLKSMRD-LGNTLIVVEHD 565 (972)
T ss_dssp HHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHH-HHHHHHHHT-TTCEEEEECCC
T ss_pred hhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecC
Confidence 56777764 46778899999999888877764 33 589999999999999998887 446777876 69999999999
Q ss_pred hHHHhhcCCCCce------EeeEEEEEEE
Q psy5289 675 HEIALLSRVIPTF------RNVQVSALEQ 697 (813)
Q Consensus 675 ~el~~~~~~~~~v------~~~~~~~~~~ 697 (813)
.+....+|++..+ ..|++.+...
T Consensus 566 l~~i~~ADrIi~LgpgaG~~gG~iv~~G~ 594 (972)
T 2r6f_A 566 EDTMLAADYLIDIGPGAGIHGGEVVAAGT 594 (972)
T ss_dssp HHHHHSCSEEEEECSSSGGGCCSEEEEEC
T ss_pred HHHHHhCCEEEEeCCCccCCCCEEEEecC
Confidence 9888888887766 5777776654
No 112
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.33 E-value=3.9e-07 Score=100.37 Aligned_cols=139 Identities=11% Similarity=-0.069 Sum_probs=70.0
Q ss_pred ccccccccCC--ceeEEEEccCCCChhHHHhhhhhhhhhhh---ccc-c---------c---cCCccchhHHHH--HHHh
Q psy5289 542 PNDVYFKSGE--VSFNLVTGPNMGGKSTYIRSIGVSVFLAQ---IGC-F---------V---PCDSATISVVDQ--IFTR 601 (813)
Q Consensus 542 ~n~v~l~~~~--g~~~~itGpNgsGKSTllr~i~~~~~laq---~g~-~---------v---pa~~~~~~~~d~--i~~~ 601 (813)
...+++.+.+ ++.++|+||||||||||+|+++.+.-... .|. + . +.+...+....+ ....
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~ 237 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYA 237 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHH
Confidence 3456666777 89999999999999999999976532211 011 1 1 000001111110 0001
Q ss_pred cCCchhHhhccc--------hhHHHHHHHHHHHHh--CCCCcEEEEeC---CC------CCCChhhHHHHHHHHHHHHHh
Q psy5289 602 VGAADSQYRGIS--------TFMMEMKETATVIKK--CTENSLVIIDE---LG------RGTSTFDGFGMACSIARELAS 662 (813)
Q Consensus 602 ~~~~d~~~~~~s--------~f~~e~~~~~~il~~--~~~~~LlllDE---p~------~Gtd~~d~~~i~~~i~~~l~~ 662 (813)
....+++..... ..+.+.++...+... ..++++++||| |+ .|.|+.....++..+.+.+.+
T Consensus 238 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~ 317 (365)
T 1lw7_A 238 VRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDK 317 (365)
T ss_dssp HHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHG
T ss_pred HhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHH
Confidence 111122211100 001111111222222 35799999999 64 466777777887766554444
Q ss_pred cCCCEEEEEcCChHHHhhc
Q psy5289 663 HRQPFTLFATHFHEIALLS 681 (813)
Q Consensus 663 ~~~~~~l~~TH~~el~~~~ 681 (813)
.+.+++++||..+...++
T Consensus 318 -~~~~ililde~~~~~r~~ 335 (365)
T 1lw7_A 318 -YKVPYIEIESPSYLDRYN 335 (365)
T ss_dssp -GGCCCEEEECSSHHHHHH
T ss_pred -cCCCEEEeCCCCHHHHHH
Confidence 478899999864444433
No 113
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.32 E-value=8.8e-07 Score=107.43 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=78.8
Q ss_pred HHHHhcCCch-hHhhccchhHHHHHHHHHHHHhC-CCC--cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q psy5289 597 QIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TEN--SLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFAT 672 (813)
Q Consensus 597 ~i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~~-~~~--~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~T 672 (813)
..+..+|+.. .+.+..+++|++++|+..+++.. .+| .++|||||++|+|+.+...+.. +++.+.+ .|.|+|++|
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~-~L~~L~~-~G~TvivVt 523 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK-TLKKLRD-LGNTVIVVE 523 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH-HHHHTTT-TTCEEEEEC
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH-HHHHHHh-cCCEEEEEe
Confidence 4566788764 36778899999998887777764 444 4999999999999999888855 5666766 599999999
Q ss_pred CChHHHhhcCCCCce------EeeEEEEEEE
Q psy5289 673 HFHEIALLSRVIPTF------RNVQVSALEQ 697 (813)
Q Consensus 673 H~~el~~~~~~~~~v------~~~~~~~~~~ 697 (813)
||.++...++++..+ ..|++.+...
T Consensus 524 Hd~~~~~~aD~ii~lgpgag~~~G~iv~~G~ 554 (916)
T 3pih_A 524 HDEEVIRNADHIIDIGPGGGTNGGRVVFQGT 554 (916)
T ss_dssp CCHHHHHTCSEEEEEESSSGGGCSEEEEEEC
T ss_pred CCHHHHHhCCEEEEEcCCcccCCCEEEEeec
Confidence 999988888888777 7788877653
No 114
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.25 E-value=1.2e-06 Score=105.27 Aligned_cols=97 Identities=9% Similarity=0.062 Sum_probs=77.0
Q ss_pred HHHhcCCch-hHhhccchhHHHHHHHHHHHHhC-CCC--cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcC
Q psy5289 598 IFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TEN--SLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATH 673 (813)
Q Consensus 598 i~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~~-~~~--~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH 673 (813)
.+..+|+.. .+.+..+++|++++|+..+++.+ .+| .|+||||||+|+|+.+...+.+ +++.|.+ .|.++|++||
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~-~l~~L~~-~G~TVIvVeH 439 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLS-ALENLKR-GGNSLFVVEH 439 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHT-TTCEEEEECC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHH-HHHHHHH-cCCEEEEEcC
Confidence 456778764 36778899999998888777765 455 5999999999999999888744 7777876 6999999999
Q ss_pred ChHHHhhcCCCCce------EeeEEEEEE
Q psy5289 674 FHEIALLSRVIPTF------RNVQVSALE 696 (813)
Q Consensus 674 ~~el~~~~~~~~~v------~~~~~~~~~ 696 (813)
+.++...+|++..+ ..|.+.+..
T Consensus 440 dl~~l~~aD~ii~lgpgaG~~~G~iv~~g 468 (842)
T 2vf7_A 440 DLDVIRRADWLVDVGPEAGEKGGEILYSG 468 (842)
T ss_dssp CHHHHTTCSEEEEECSSSGGGCCSEEEEE
T ss_pred CHHHHHhCCEEEEeCCCcccCCCEEEEec
Confidence 99988888887766 566666554
No 115
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.24 E-value=1.3e-06 Score=105.81 Aligned_cols=96 Identities=14% Similarity=0.068 Sum_probs=75.2
Q ss_pred HHhcCCch-hHhhccchhHHHHHHHHHHHHhC-CC--CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC
Q psy5289 599 FTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TE--NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF 674 (813)
Q Consensus 599 ~~~~~~~d-~~~~~~s~f~~e~~~~~~il~~~-~~--~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~ 674 (813)
+..+|+.. .+.+..+++|++++|+..++... .+ +.|+|||||++|+|+.+...+.. +++.|.+ .|.++|+++|+
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~-~L~~Lr~-~G~TVIvVeHd 582 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIE-TLTRLRD-LGNTLIVVEHD 582 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHH-HHHHHHH-TTCEEEEECCC
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHH-HHHHHHH-cCCEEEEECCC
Confidence 56677764 36778899999998888777764 44 58999999999999999888744 6777776 69999999999
Q ss_pred hHHHhhcCCCCce------EeeEEEEEE
Q psy5289 675 HEIALLSRVIPTF------RNVQVSALE 696 (813)
Q Consensus 675 ~el~~~~~~~~~v------~~~~~~~~~ 696 (813)
.+....+|++..+ ..|.+.+..
T Consensus 583 l~~i~~ADrIi~Lgp~aG~~gG~iv~~G 610 (993)
T 2ygr_A 583 EDTIEHADWIVDIGPGAGEHGGRIVHSG 610 (993)
T ss_dssp HHHHHTCSEEEEECSSSGGGCCSCCEEE
T ss_pred HHHHHhCCEEEEecCccccCCCEEEEee
Confidence 9888888887666 456555443
No 116
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=2.2e-06 Score=93.42 Aligned_cols=43 Identities=12% Similarity=0.103 Sum_probs=28.6
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh-cCCCEEEEEcCChH
Q psy5289 629 CTENSLVIIDELGRGTSTFDGFGMACSIARELAS-HRQPFTLFATHFHE 676 (813)
Q Consensus 629 ~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~-~~~~~~l~~TH~~e 676 (813)
..++.++|+|||.. +|+....+ +++.+.+ ..++++|++||+.+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~----L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAA----LRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHH----HHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHH----HHHHHHhhcCCCEEEEEeCCHH
Confidence 34788999999988 77654333 3333333 13688999999853
No 117
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.18 E-value=8.8e-07 Score=94.81 Aligned_cols=37 Identities=8% Similarity=-0.004 Sum_probs=27.4
Q ss_pred EEEEeCCCC-CCChhhHHHHHHHHHHHHHhcCCCEEEEEcCCh
Q psy5289 634 LVIIDELGR-GTSTFDGFGMACSIARELASHRQPFTLFATHFH 675 (813)
Q Consensus 634 LlllDEp~~-Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~ 675 (813)
++++|||++ |+|+.+. .++..+....+.++++++||.
T Consensus 130 ll~ldePt~~~Ld~~~~-----~~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 130 CFYFISPFGHGLKPLDV-----AFMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp EEEEECSSSSSCCHHHH-----HHHHHHTTTSCEEEEECCGGG
T ss_pred eeeeecCcccCCCHHHH-----HHHHHHHhcCCEEEEEEeCCC
Confidence 999999987 5999762 345555543467788889995
No 118
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.18 E-value=7.5e-06 Score=87.28 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=68.9
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhhhhhhcc---ccccCCccchhHHHHHH---HhcCCchhHhhccchhHHHHHHHH
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG---CFVPCDSATISVVDQIF---TRVGAADSQYRGISTFMMEMKETA 623 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g---~~vpa~~~~~~~~d~i~---~~~~~~d~~~~~~s~f~~e~~~~~ 623 (813)
..|++++|+||||+||||+++.++..... ..| .+++++.......+.+- .+.|........ ..+ +.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~----~~~---l~ 174 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYT----KEE---FQ 174 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSS----HHH---HH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCC----HHH---HH
Confidence 35789999999999999999998765432 123 34444444333333322 223322111111 111 23
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh--cCCCEEEE-EcCCh-HHHhhcCCCCce
Q psy5289 624 TVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELAS--HRQPFTLF-ATHFH-EIALLSRVIPTF 687 (813)
Q Consensus 624 ~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~--~~~~~~l~-~TH~~-el~~~~~~~~~v 687 (813)
.++..+.++++||+| |.|.++.+...+ +.+...+.. ..+..+++ +||.. ++.++++.+..+
T Consensus 175 ~al~~~~~~dlvIiD--T~G~~~~~~~~~-~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l 239 (296)
T 2px0_A 175 QAKELFSEYDHVFVD--TAGRNFKDPQYI-DELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSV 239 (296)
T ss_dssp HHHHHGGGSSEEEEE--CCCCCTTSHHHH-HHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSS
T ss_pred HHHHHhcCCCEEEEe--CCCCChhhHHHH-HHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcC
Confidence 333345789999999 557777654333 334443321 11223444 48984 566667665433
No 119
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.16 E-value=5.1e-07 Score=87.08 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=34.4
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
..+.++++|++.+|++++|+||||||||||+|.++...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45788999999999999999999999999999997654
No 120
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.10 E-value=7.9e-06 Score=89.14 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=66.6
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhhh-ccccccCCccchhHHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHH
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IGCFVPCDSATISVVDQIFTRVGAA-DSQYRGISTFMMEMKETATVI 626 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-~g~~vpa~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il 626 (813)
...|+++.|.||||+|||||+.+++....... ...|+..+.. ... ....++|.. +++.-....-..+..+++..+
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~-~~~--~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l 134 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA-LDP--EYAKKLGVDTDSLLVSQPDTGEQALEIADML 134 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CCH--HHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-cCH--HHHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 34689999999999999999999865443221 1233333321 111 124455532 211100001122333333333
Q ss_pred HhCCCCcEEEEeCCCCCCChh-------h------HHHHHHHHHHHH----HhcCCCEEEEEcCCh
Q psy5289 627 KKCTENSLVIIDELGRGTSTF-------D------GFGMACSIAREL----ASHRQPFTLFATHFH 675 (813)
Q Consensus 627 ~~~~~~~LlllDEp~~Gtd~~-------d------~~~i~~~i~~~l----~~~~~~~~l~~TH~~ 675 (813)
....++++|++|||+...... | ...+ ...+..+ .+ .++++|+++|..
T Consensus 135 ~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~-~~~l~~L~~~a~~-~~~tVI~inh~~ 198 (349)
T 2zr9_A 135 VRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLM-SQALRKMTGALNN-SGTTAIFINELR 198 (349)
T ss_dssp HTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHH-HHHHHHHHHHHHH-HTCEEEEEEECC
T ss_pred HhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHH-HHHHHHHHHHHHH-hCCEEEEEeccc
Confidence 334579999999999887311 1 0112 2223333 43 699999999964
No 121
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.09 E-value=4.5e-07 Score=101.16 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=25.8
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
..+.++++|. ++|+||||+|||||+++++...
T Consensus 24 ~~vl~~vsf~------I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 24 KSVKRGFEFT------LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp TTCC-CCCEE------EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEecCCCEE------EEEECCCCCcHHHHHHHHhCCC
Confidence 4567788886 3999999999999999987654
No 122
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.05 E-value=6.4e-07 Score=99.62 Aligned_cols=34 Identities=21% Similarity=0.042 Sum_probs=30.7
Q ss_pred ccccccccCCcee--EEEEccCCCChhHHHhhhhhh
Q psy5289 542 PNDVYFKSGEVSF--NLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 542 ~n~v~l~~~~g~~--~~itGpNgsGKSTllr~i~~~ 575 (813)
.++++|++..|++ ++|+|||||||||||+++++.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 7799999999999 999999999999999999664
No 123
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.03 E-value=7.2e-06 Score=87.69 Aligned_cols=26 Identities=35% Similarity=0.310 Sum_probs=23.2
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
++|++++|+|||||||||+++.++..
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35889999999999999999999754
No 124
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.97 E-value=1.4e-05 Score=78.05 Aligned_cols=71 Identities=11% Similarity=0.020 Sum_probs=51.5
Q ss_pred cchhHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCC
Q psy5289 612 ISTFMMEMKETATVIKKC-----TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIP 685 (813)
Q Consensus 612 ~s~f~~e~~~~~~il~~~-----~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~ 685 (813)
.+.+|++++++..++... .+++++|||||++|+|+.....+.. ++..+.+ +.++|++||+..+...++++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~-~l~~~~~--~~~~ivith~~~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVAD-LIKESSK--ESQFIVITLRDVMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTT--TSEEEEECSCHHHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHH-HHHHhcc--CCEEEEEEecHHHHHhCCEEE
Confidence 345677777765555442 5678999999999999988777654 4454543 568999999988777776553
No 125
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.94 E-value=1.4e-05 Score=86.34 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=24.1
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.++|++++|+|||||||||+++.++..
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999754
No 126
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.90 E-value=2e-06 Score=94.43 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=30.3
Q ss_pred cccccccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 543 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 543 n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+++++.+..|++++|+|||||||||++++++..
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 788999999999999999999999999998654
No 127
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.90 E-value=3.1e-05 Score=89.19 Aligned_cols=112 Identities=19% Similarity=0.144 Sum_probs=70.7
Q ss_pred HHHHHHHHHHH-HhCCCC--cEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCceEeeEE
Q psy5289 616 MMEMKETATVI-KKCTEN--SLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQV 692 (813)
Q Consensus 616 ~~e~~~~~~il-~~~~~~--~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~v~~~~~ 692 (813)
|+++++...++ ..+.+| +++|+|||++|+|+.....+.. ++..+.+ |.++|++||+++++..++++..+.++.
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~-~l~~~~~--~~~vi~itH~~~~~~~~d~~~~~~~~~- 474 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLAD--TRQVLVVTHLAQIAARAHHHYKVEKQV- 474 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHH-HHHHHHH--HSEEEEECCCHHHHHHSSEEEEEECCE-
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHH-HHHHHhC--CCEEEEEecCHHHHHhCCEEEEEeccc-
Confidence 55555544443 345677 9999999999999987777644 5555664 789999999999988887765554432
Q ss_pred EEEEECCeEEEEEEeccCCCCCcHHHHHHHHCC--CCHHHHHHHHHHH
Q psy5289 693 SALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAG--YPEDMLEQARDLM 738 (813)
Q Consensus 693 ~~~~~~~~i~~~y~l~~G~~~~s~gi~vA~~ag--~p~~vi~~A~~~~ 738 (813)
.++...-..+- .....---++|+++| +.+..++.|++++
T Consensus 475 ----~~~~~~~~~~~---l~~~~~~~ei~~~~~g~~~~~~~~~a~~ll 515 (517)
T 4ad8_A 475 ----EDGRTVSHVRL---LTGDERLEEIARMLSGNTSEAALEHARELL 515 (517)
T ss_dssp ----ETTEECCEEEE---CCSHHHHHHHHHHSSSSCCHHHHHHHHHHH
T ss_pred ----cCCceeeeeee---CCcchHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 12222111111 111122346788875 4666777776643
No 128
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.83 E-value=8.5e-05 Score=80.90 Aligned_cols=123 Identities=11% Similarity=0.089 Sum_probs=65.9
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhhh-ccccccCCccchhHHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHH
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IGCFVPCDSATISVVDQIFTRVGAA-DSQYRGISTFMMEMKETATVI 626 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-~g~~vpa~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il 626 (813)
...|+++.|+||||+|||||+.+++....... ...|+..+...-. ....++|.. +++.-....-..++.+....+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~---~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDP---VYAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH---HHHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccch---HHHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 35689999999999999999999876543211 1124433322111 144556643 222111111122333333323
Q ss_pred HhCCCCcEEEEeCCCCCCC--hhh-----------HHHHHHH--HHHHHHhcCCCEEEEEcCC
Q psy5289 627 KKCTENSLVIIDELGRGTS--TFD-----------GFGMACS--IARELASHRQPFTLFATHF 674 (813)
Q Consensus 627 ~~~~~~~LlllDEp~~Gtd--~~d-----------~~~i~~~--i~~~l~~~~~~~~l~~TH~ 674 (813)
.....++++++|....=.. ..+ ...++.. .+..+.++.++++|++.|-
T Consensus 135 ~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp HHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred hhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 3346789999999865543 111 1222221 2233444468999999886
No 129
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.80 E-value=5.2e-05 Score=85.85 Aligned_cols=132 Identities=9% Similarity=0.063 Sum_probs=70.2
Q ss_pred ccccccccCCceeEEEEccCCCChhHHHhhhhhhhhhhh--ccccccCCccchhHHHHHHH-hcCCc-hhHhh-------
Q psy5289 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ--IGCFVPCDSATISVVDQIFT-RVGAA-DSQYR------- 610 (813)
Q Consensus 542 ~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq--~g~~vpa~~~~~~~~d~i~~-~~~~~-d~~~~------- 610 (813)
.+++......|++++|.||+|+|||||+.+++......+ -..++..+...-.+..++.. ..+.. +.+..
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~ 272 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPED 272 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHH
Confidence 344445567899999999999999999999987654321 11222222111122222221 11110 00000
Q ss_pred -------------------ccchhH-HHHHHHHHHHHhCCCCcEEEEeCCCCCCChh-----hHHHHH--HHHHHHHHhc
Q psy5289 611 -------------------GISTFM-MEMKETATVIKKCTENSLVIIDELGRGTSTF-----DGFGMA--CSIARELASH 663 (813)
Q Consensus 611 -------------------~~s~f~-~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~-----d~~~i~--~~i~~~l~~~ 663 (813)
..+.++ .++...+..+....++++|++|++....... ....+. ...+..++++
T Consensus 273 ~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke 352 (454)
T 2r6a_A 273 WGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARE 352 (454)
T ss_dssp HHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 011112 3333333333334689999999998877432 111221 1233444444
Q ss_pred CCCEEEEEcC
Q psy5289 664 RQPFTLFATH 673 (813)
Q Consensus 664 ~~~~~l~~TH 673 (813)
.++++|+++|
T Consensus 353 ~~i~vi~~sq 362 (454)
T 2r6a_A 353 LEVPVIALSQ 362 (454)
T ss_dssp HTCCEEEEEC
T ss_pred hCCeEEEEec
Confidence 6999999999
No 130
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.75 E-value=7.2e-05 Score=79.93 Aligned_cols=32 Identities=19% Similarity=0.128 Sum_probs=26.4
Q ss_pred cccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 545 VYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 545 v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
+++....+++++|+||||+||||+++.++...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34445678999999999999999999987654
No 131
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.75 E-value=5.8e-05 Score=80.32 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=26.7
Q ss_pred cccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 543 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 543 n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
++++++ .|++++|+||||+||||+++.++...
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 355665 68999999999999999999997654
No 132
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.74 E-value=8.4e-05 Score=81.63 Aligned_cols=119 Identities=9% Similarity=-0.017 Sum_probs=64.2
Q ss_pred eEEEEccCCCChhHHHhhhhhhhhhh-hc-cccccCCcc--chhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHhC
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVSVFLA-QI-GCFVPCDSA--TISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC 629 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~~~la-q~-g~~vpa~~~--~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~ 629 (813)
.++|+||+|+||||+++.++....-. .. -.++.+... ...++..++..++.... ..+.+ ...-...+...+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~~~~~~~l~~~l~~~ 123 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP-RRGLS-RDEFLALLVEHLRER 123 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC-SSCCC-HHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC-CCCCC-HHHHHHHHHHHHhhc
Confidence 89999999999999999986543211 01 112222221 22344555555543210 01111 111122333444445
Q ss_pred CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh--c---CCCEEEEEcCChHHHh
Q psy5289 630 TENSLVIIDELGRGTSTFDGFGMACSIARELAS--H---RQPFTLFATHFHEIAL 679 (813)
Q Consensus 630 ~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~--~---~~~~~l~~TH~~el~~ 679 (813)
..+.+|+|||+... +.. ....+...+.+ . .+..+|++||+.++..
T Consensus 124 ~~~~vlilDE~~~l-~~~----~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APD----ILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp TCCEEEEEETGGGS-CHH----HHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred CCeEEEEEECcccc-chH----HHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 67889999999765 322 22333333321 1 3678889999986554
No 133
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.73 E-value=1.5e-05 Score=82.32 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.8
Q ss_pred ceeEEEEccCCCChhHHHhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~ 573 (813)
+++++|+|||||||||++|.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5799999999999999999997
No 134
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.73 E-value=0.0001 Score=83.05 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=30.4
Q ss_pred ccccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 542 ~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
.++++|+...|++++|+|||||||||+++.++...
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35777888889999999999999999999997653
No 135
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.71 E-value=7.8e-06 Score=83.67 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=22.0
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhh-hh
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG-VS 575 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~-~~ 575 (813)
....+++|++.+|++++|+|||||||||+++.++ ..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3466888988899999999999999999999987 55
No 136
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.71 E-value=2.7e-05 Score=77.80 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=27.6
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+.++ |....|..++|+|+||+|||||++.+...
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4455 66678899999999999999999998643
No 137
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.70 E-value=1.4e-05 Score=79.79 Aligned_cols=28 Identities=14% Similarity=0.402 Sum_probs=23.7
Q ss_pred ccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 548 KSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 548 ~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
...+|++++|+|||||||||+++.++..
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3456899999999999999999999765
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.58 E-value=3.2e-05 Score=84.69 Aligned_cols=126 Identities=7% Similarity=0.147 Sum_probs=63.4
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhhhhhhc-c---ccccCCcc--chhHHHHHHHhcCCchhHhhccchhHHHHHHHH
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQI-G---CFVPCDSA--TISVVDQIFTRVGAADSQYRGISTFMMEMKETA 623 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~~laq~-g---~~vpa~~~--~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~ 623 (813)
..+..++|+||+|+||||+++.++....-... + .++.+... ...++..++..++.... ..+. ....-...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~-~~~~-~~~~~~~~l~ 120 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVP-FTGL-SIAELYRRLV 120 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC-SSSC-CHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCC-CCCC-CHHHHHHHHH
Confidence 45678999999999999999998654321100 1 11221111 11223334333332110 0111 1111123344
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHH--hcCCCEEEEEcCChHHH
Q psy5289 624 TVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA--SHRQPFTLFATHFHEIA 678 (813)
Q Consensus 624 ~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~--~~~~~~~l~~TH~~el~ 678 (813)
..+.....+.+|+|||+....+..+ ..+...+++.+. ...+..+|++||..++.
T Consensus 121 ~~l~~~~~~~vlilDE~~~l~~~~~-~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 121 KAVRDYGSQVVIVLDEIDAFVKKYN-DDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HHHHTCCSCEEEEEETHHHHHHSSC-STHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHhccCCeEEEEEcChhhhhccCc-CHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 4444445588999999955432211 122344555443 22467789999987654
No 139
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.58 E-value=0.0002 Score=77.89 Aligned_cols=127 Identities=10% Similarity=0.084 Sum_probs=65.7
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhhh-------ccccccCCcc-chhHHHHHHHhcCCchh-Hhhcc---chh-
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-------IGCFVPCDSA-TISVVDQIFTRVGAADS-QYRGI---STF- 615 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-------~g~~vpa~~~-~~~~~d~i~~~~~~~d~-~~~~~---s~f- 615 (813)
...|+++.|+||+|+|||||+.+++..+.+.. ...|+..+.. ....+..+..++|.... +.... ..+
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 46789999999999999999999877644321 1123333321 11222334455554311 10110 001
Q ss_pred HHHHH----HHHHHHHhC-CCCcEEEEeCCCCCCChh--------hHHHHHHHHH---HHHHhcCCCEEEEEcCCh
Q psy5289 616 MMEMK----ETATVIKKC-TENSLVIIDELGRGTSTF--------DGFGMACSIA---RELASHRQPFTLFATHFH 675 (813)
Q Consensus 616 ~~e~~----~~~~il~~~-~~~~LlllDEp~~Gtd~~--------d~~~i~~~i~---~~l~~~~~~~~l~~TH~~ 675 (813)
..++. ++...+... .++++|++|+++.-.... +.......++ ..++++.++++|+++|..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 11111 222233322 678999999997544221 1111112222 223334689999999974
No 140
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.56 E-value=4.2e-05 Score=85.16 Aligned_cols=124 Identities=13% Similarity=0.080 Sum_probs=70.1
Q ss_pred cccccccCCceeEEEEccCCCChhHHHhhhhhhhh----------hhhcccc------------ccCCc------cchhH
Q psy5289 543 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF----------LAQIGCF------------VPCDS------ATISV 594 (813)
Q Consensus 543 n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~~----------laq~g~~------------vpa~~------~~~~~ 594 (813)
++++|+...+..++|+|||||||||||+++..... ....|.. .|... ..++
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~- 226 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLG- 226 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSC-
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhh-
Confidence 47888888899999999999999999999865411 1111110 01100 0011
Q ss_pred HHHHHHhcCCch------hH-hhccchhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCC
Q psy5289 595 VDQIFTRVGAAD------SQ-YRGISTFMMEMKETATVIK-KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQP 666 (813)
Q Consensus 595 ~d~i~~~~~~~d------~~-~~~~s~f~~e~~~~~~il~-~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~ 666 (813)
...+..+...+ ++ ......++..++++..+.. .+..|.++++ +++|..+. .....+.+.+.+ .+.
T Consensus 227 -~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~-~g~ 299 (416)
T 1udx_A 227 -LEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAR-EGL 299 (416)
T ss_dssp -HHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHT-TTS
T ss_pred -HHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHh-cCC
Confidence 11111111000 01 2233456666776665543 3458899998 88888765 444555565554 466
Q ss_pred EEEEEc-CC
Q psy5289 667 FTLFAT-HF 674 (813)
Q Consensus 667 ~~l~~T-H~ 674 (813)
+++++| |.
T Consensus 300 ~vi~iSA~~ 308 (416)
T 1udx_A 300 AVLPVSALT 308 (416)
T ss_dssp CEEECCTTT
T ss_pred eEEEEECCC
Confidence 666654 44
No 141
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.51 E-value=4.1e-05 Score=74.95 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=26.9
Q ss_pred cccccccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 543 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 543 n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.+++++..+| +++|+|||||||||++++|..+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 4666776666 9999999999999999998654
No 142
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.46 E-value=3.9e-05 Score=86.71 Aligned_cols=35 Identities=23% Similarity=0.141 Sum_probs=31.3
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
+.++++|++.+ ++++|+||||||||||||+++++.
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999998 999999999999999999997654
No 143
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.45 E-value=0.00018 Score=81.04 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=57.2
Q ss_pred ceeEEEEccCCCChhHHHhhhhhhhhhhhccc---cccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC---FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK 628 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~~~laq~g~---~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~ 628 (813)
+..++|+||+|+||||+++.++....-..-+. ++.+.. ....+...+ ..+ . ...+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~----~~~~~~~~~------~~~------~---~~~~~~~ 190 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK----FLNDLVDSM------KEG------K---LNEFREK 190 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH----HHHHHHHHH------HTT------C---HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH----HHHHHHHHH------Hcc------c---HHHHHHH
Confidence 45799999999999999999976442211111 111111 111111111 000 0 1111222
Q ss_pred CC-CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC
Q psy5289 629 CT-ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF 674 (813)
Q Consensus 629 ~~-~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~ 674 (813)
.. ++++|+|||+....+..........+++.+.+ .|+.+|++||.
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~ 236 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDR 236 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESS
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECC
Confidence 23 78999999997766532222333445565565 58889999997
No 144
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.45 E-value=0.00012 Score=88.09 Aligned_cols=132 Identities=16% Similarity=0.126 Sum_probs=67.2
Q ss_pred CceeEEEEccCCCChhHHHhhhhhhhhhhh-----ccccccCCccchhHHHHHHHhcCCchhHhh--------------c
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-----IGCFVPCDSATISVVDQIFTRVGAADSQYR--------------G 611 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~~~laq-----~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~--------------~ 611 (813)
.|+.++|+|||||||||++.++.+...... +.+..|-......+.+.+...++..-...- .
T Consensus 108 ~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~ 187 (773)
T 2xau_A 108 NNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTI 187 (773)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCC
Confidence 357899999999999998888744322221 222335433333333444333332110000 0
Q ss_pred cchhHHHHHHHHHHH-HhCCCCcEEEEeCCC-CCCChhhHHHHHHHHHHHHHhcCCCEEEE-EcCChH-HHhhcCCC
Q psy5289 612 ISTFMMEMKETATVI-KKCTENSLVIIDELG-RGTSTFDGFGMACSIARELASHRQPFTLF-ATHFHE-IALLSRVI 684 (813)
Q Consensus 612 ~s~f~~e~~~~~~il-~~~~~~~LlllDEp~-~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~-~TH~~e-l~~~~~~~ 684 (813)
+...+.++.....+. ..+.+.++||+||+. +++++.....+...+... .. ...++++ |||+.+ +..+....
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~-~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKR-RP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH-CT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHh-CC-CceEEEEeccccHHHHHHHhcCC
Confidence 111223443322221 235788999999997 477764433333333322 11 2345566 599854 44455443
No 145
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.42 E-value=0.00017 Score=80.91 Aligned_cols=73 Identities=10% Similarity=0.030 Sum_probs=52.6
Q ss_pred cchhHHHHHHHHHHHHh-C----CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCCc
Q psy5289 612 ISTFMMEMKETATVIKK-C----TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPT 686 (813)
Q Consensus 612 ~s~f~~e~~~~~~il~~-~----~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~~ 686 (813)
.+.+|++++++..++.. + .+|+++|||||++|+|+.....+.. ++..+.. .+.++|++||+.++...++++..
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~~-~~~~~ii~th~~~~~~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRN-PDLQFIVISLKNTMFEKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCB-TTBEEEEECSCHHHHTTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHH-HHHHHhc-CCCEEEEEECCHHHHHhCCEEEE
Confidence 35667777776555443 3 5789999999999999987766654 4444443 47899999999887777665533
No 146
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.39 E-value=6.6e-05 Score=75.46 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.3
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
++|++++|+||||||||||+|.++...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999997654
No 147
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.39 E-value=6.6e-05 Score=73.93 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=24.0
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+.+|++++|+|||||||||++|.++..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 457899999999999999999998654
No 148
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.38 E-value=0.00021 Score=78.66 Aligned_cols=54 Identities=20% Similarity=0.155 Sum_probs=40.1
Q ss_pred CCC-CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCCCC
Q psy5289 629 CTE-NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIP 685 (813)
Q Consensus 629 ~~~-~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~~~ 685 (813)
+.+ |+++|||||++|+|+.....+... +..+. .+.++|++||+.++..+++++.
T Consensus 302 ~~~~~~~lllDEp~~~LD~~~~~~l~~~-l~~~~--~~~~vi~~th~~~~~~~~d~~~ 356 (371)
T 3auy_A 302 IGNRVECIILDEPTVYLDENRRAKLAEI-FRKVK--SIPQMIIITHHRELEDVADVII 356 (371)
T ss_dssp HSSCCSEEEEESTTTTCCHHHHHHHHHH-HHHCC--SCSEEEEEESCGGGGGGCSEEE
T ss_pred hcCCCCeEEEeCCCCcCCHHHHHHHHHH-HHHhc--cCCeEEEEEChHHHHhhCCEEE
Confidence 467 999999999999999876666443 33333 2468999999988776666543
No 149
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.36 E-value=0.00045 Score=78.18 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=23.0
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
++.+..+.| ++|+||+|+||||++|.++..
T Consensus 43 ~~g~~~p~g--vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 43 RIGARMPKG--ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp TTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred hcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 344444444 889999999999999998753
No 150
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.36 E-value=6.2e-05 Score=74.21 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.9
Q ss_pred ceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
|++++|+|||||||||++|.++...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999987543
No 151
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.33 E-value=5.1e-05 Score=80.56 Aligned_cols=25 Identities=28% Similarity=0.179 Sum_probs=21.8
Q ss_pred CCceeEEEEccCCCChhHHHhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+.+.+++|+||+||||||+.+.++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999998854
No 152
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.28 E-value=5.7e-05 Score=80.95 Aligned_cols=26 Identities=23% Similarity=0.111 Sum_probs=23.8
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
..|++++|+|||||||||+++.++..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999998764
No 153
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.27 E-value=0.00015 Score=82.60 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=22.9
Q ss_pred cccCCceeEEEEccCCCChhHHHhhhhh
Q psy5289 547 FKSGEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 547 l~~~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
++..++..++|.|++||||||+|+++..
T Consensus 162 ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 162 ADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 3334467899999999999999999854
No 154
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.26 E-value=9e-05 Score=73.96 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=21.6
Q ss_pred CceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
.|++++|+|||||||||++|.+....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999986543
No 155
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.25 E-value=0.00092 Score=71.82 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=29.0
Q ss_pred cccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 543 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 543 n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
.+++|...++++++|+||||+||||++..++...
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4677777788999999999999999999987643
No 156
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.25 E-value=0.00024 Score=70.64 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=20.9
Q ss_pred eeEEEEccCCCChhHHHhhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
..++|+||+|+||||+++.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999987544
No 157
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.24 E-value=9.7e-05 Score=80.16 Aligned_cols=37 Identities=27% Similarity=0.232 Sum_probs=32.2
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
.+.++++++..+|++++|+||||||||||++.++...
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3566888998999999999999999999999987543
No 158
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.24 E-value=0.00011 Score=73.20 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=22.6
Q ss_pred ceeeccccccccCCceeEEEEccCCCChhHHHhhhhh
Q psy5289 538 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 538 ~~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
..+..++++|+..++++++|+||+||||||+.+.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999999999999999864
No 159
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.19 E-value=0.00014 Score=72.44 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=23.8
Q ss_pred ccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 548 KSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 548 ~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
++.+|++++|+|||||||||+++.++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34578999999999999999999986543
No 160
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.18 E-value=0.00095 Score=71.86 Aligned_cols=127 Identities=10% Similarity=0.108 Sum_probs=64.5
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhhh-------ccccccCCcc-chhHHHHHHHhcCCch-hHhhcc---chhH
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-------IGCFVPCDSA-TISVVDQIFTRVGAAD-SQYRGI---STFM 616 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-------~g~~vpa~~~-~~~~~d~i~~~~~~~d-~~~~~~---s~f~ 616 (813)
...|+++.|.||+|+|||||..+++..+...+ ...|+..+.. ....+..+..++|..- .+.... ..+.
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 35689999999999999999999876543321 1123333321 1122223445565431 111110 1111
Q ss_pred HH-HH----HHHHHHHhCCCCcEEEEeCCCCCCCh--------hhHHHHHHHHHH---HHHhcCCCEEEEEcCCh
Q psy5289 617 ME-MK----ETATVIKKCTENSLVIIDELGRGTST--------FDGFGMACSIAR---ELASHRQPFTLFATHFH 675 (813)
Q Consensus 617 ~e-~~----~~~~il~~~~~~~LlllDEp~~Gtd~--------~d~~~i~~~i~~---~l~~~~~~~~l~~TH~~ 675 (813)
.+ +. .+...+....++++|++|+++.-... .+.......++. .+.++.++++|++.|-.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 22 11 22222222267899999999653221 111111122222 23333689999998864
No 161
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.17 E-value=0.00041 Score=74.58 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.6
Q ss_pred ceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
+..++|+||+|+||||+++.++...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4679999999999999999987543
No 162
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.16 E-value=0.0014 Score=71.34 Aligned_cols=122 Identities=14% Similarity=0.169 Sum_probs=63.7
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhhh-ccccccCCccchhHHHHHHHhcCCc-hhHhh-ccchhHHHHHHHHHH
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IGCFVPCDSATISVVDQIFTRVGAA-DSQYR-GISTFMMEMKETATV 625 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-~g~~vpa~~~~~~~~d~i~~~~~~~-d~~~~-~~s~f~~e~~~~~~i 625 (813)
...|++++|.||+|+|||||..+++....... ...|+..+... . .....++|.. +++.- ...+ ..++.++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~-~--~~~a~~~g~~~~~l~i~~~~~-~e~~~~~~~~ 135 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-D--PIYARKLGVDIDNLLCSQPDT-GEQALEICDA 135 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC-C--HHHHHHTTCCGGGCEEECCSS-HHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc-c--HHHHHHcCCChhheeeeCCCC-HHHHHHHHHH
Confidence 45689999999999999999998865543221 12334333221 1 1123455532 11110 0111 1223333332
Q ss_pred HHhCCCCcEEEEeCCCCCCChhh-------------HHHHH---HHHHHHHHhcCCCEEEEEcCCh
Q psy5289 626 IKKCTENSLVIIDELGRGTSTFD-------------GFGMA---CSIARELASHRQPFTLFATHFH 675 (813)
Q Consensus 626 l~~~~~~~LlllDEp~~Gtd~~d-------------~~~i~---~~i~~~l~~~~~~~~l~~TH~~ 675 (813)
+.....+++|++|.++.-....+ ...+. ..+...+.+ .++++|++.|-.
T Consensus 136 l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~-~~~~VI~~nq~~ 200 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ-SNTLLIFINQIR 200 (356)
T ss_dssp HHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHH-HTCEEEEEEC--
T ss_pred HHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHH-hCCEEEEEeccc
Confidence 32236789999999987664211 01122 222222333 689999998863
No 163
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.16 E-value=0.00027 Score=71.78 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.2
Q ss_pred CceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
.+..++|+||.|+||||+++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999986543
No 164
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.15 E-value=0.00015 Score=72.24 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=22.8
Q ss_pred cccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 547 FKSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 547 l~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+....|++++|+|||||||||++|.++..
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 44457899999999999999999998653
No 165
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.14 E-value=0.00071 Score=75.45 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=22.0
Q ss_pred CceeEEEEccCCCChhHHHhhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.+.+++++||||+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988754
No 166
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.11 E-value=0.00017 Score=70.95 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.0
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
|++++|+|||||||||++|.++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 57899999999999999999864
No 167
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.11 E-value=0.00018 Score=70.42 Aligned_cols=25 Identities=8% Similarity=0.012 Sum_probs=22.3
Q ss_pred CceeEEEEccCCCChhHHHhhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.|++++|+|||||||||+++.++..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999998654
No 168
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.10 E-value=0.00052 Score=75.02 Aligned_cols=125 Identities=16% Similarity=0.121 Sum_probs=61.2
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhhhhhh----ccc---cccCCc--cchhHHHHHHHhcCCchhHhhccchhHHH-H
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ----IGC---FVPCDS--ATISVVDQIFTRVGAADSQYRGISTFMME-M 619 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~~laq----~g~---~vpa~~--~~~~~~d~i~~~~~~~d~~~~~~s~f~~e-~ 619 (813)
..+..++|+||.|+||||+++.++....-.. .+. ++.+.. ....++..++..++..-. ..+.+ ..+ .
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~--~~~~~ 118 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVP-FTGLS--VGEVY 118 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCC-SSCCC--HHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCC-CCCCC--HHHHH
Confidence 4467899999999999999999865331110 011 122211 112334455555543210 01111 112 2
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHh---cCCCEEEEEcCChHH
Q psy5289 620 KETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELAS---HRQPFTLFATHFHEI 677 (813)
Q Consensus 620 ~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~---~~~~~~l~~TH~~el 677 (813)
..+...+.....+.+|+|||+..-.+..........+++.... ..+..+|++|+..++
T Consensus 119 ~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~ 179 (387)
T 2v1u_A 119 ERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGF 179 (387)
T ss_dssp HHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTT
T ss_pred HHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCch
Confidence 2233333334457799999994332210022233334443321 235678889987643
No 169
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.00 E-value=0.00028 Score=77.06 Aligned_cols=74 Identities=8% Similarity=0.033 Sum_probs=48.8
Q ss_pred hhHHHHHHHHH-HHHhC---------CCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhcCC
Q psy5289 614 TFMMEMKETAT-VIKKC---------TENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRV 683 (813)
Q Consensus 614 ~f~~e~~~~~~-il~~~---------~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~~~ 683 (813)
.+|+++++... ++..+ .+|+++|||||++|+|+.....+.. .+.+ .+.++|++||..+ .+++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~----~l~~-~~qt~i~~th~~~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLD----LAAS-VPQAIVTGTELAP---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHH----HHHH-SSEEEEEESSCCT---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHH----HHHh-cCcEEEEEEeccc---cCCE
Confidence 45666666444 44445 7999999999999999976555533 3433 2368889999533 5666
Q ss_pred CCceEeeEEEEE
Q psy5289 684 IPTFRNVQVSAL 695 (813)
Q Consensus 684 ~~~v~~~~~~~~ 695 (813)
+..+.+|++...
T Consensus 337 i~~l~~G~i~~~ 348 (359)
T 2o5v_A 337 TLRAQAGRFTPV 348 (359)
T ss_dssp EEEEETTEEEEC
T ss_pred EEEEECCEEEec
Confidence 555666666443
No 170
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.00 E-value=0.0014 Score=66.95 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.5
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
|+.++|.||+||||||++.+..+-
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhc
Confidence 678999999999999998876543
No 171
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.96 E-value=0.00024 Score=70.80 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=29.0
Q ss_pred ccccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 542 ~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
.+...+....|++++|+|||||||||++|.++...
T Consensus 15 ~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 15 VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34556666789999999999999999999987654
No 172
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.95 E-value=0.00052 Score=74.89 Aligned_cols=17 Identities=0% Similarity=0.038 Sum_probs=7.5
Q ss_pred HHHHHHHHhCCCCcEEEEe
Q psy5289 620 KETATVIKKCTENSLVIID 638 (813)
Q Consensus 620 ~~~~~il~~~~~~~LlllD 638 (813)
.++...+.... ..+|+-
T Consensus 311 ~~l~~~l~~~~--qt~i~~ 327 (359)
T 2o5v_A 311 QYLLDLAASVP--QAIVTG 327 (359)
T ss_dssp HHHHHHHHHSS--EEEEEE
T ss_pred HHHHHHHHhcC--cEEEEE
Confidence 33444454443 444443
No 173
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.93 E-value=0.00039 Score=66.01 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.1
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+.+|+|||||||||+|.+|..
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999865
No 174
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.91 E-value=0.0024 Score=68.47 Aligned_cols=30 Identities=17% Similarity=0.066 Sum_probs=25.3
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhh
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFL 578 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~l 578 (813)
...|+++.|+||+|+|||||..+++..+.+
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~~l 124 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQN 124 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 356899999999999999999998765433
No 175
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.89 E-value=0.00048 Score=70.27 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=24.8
Q ss_pred ccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 548 KSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 548 ~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
...+|.+++|.|||||||||+++.++..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4467899999999999999999998765
No 176
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.87 E-value=0.0021 Score=69.44 Aligned_cols=118 Identities=10% Similarity=0.061 Sum_probs=61.8
Q ss_pred ccCCceeEEEEccCCCChhHHHhhhhhhhhhhhc-cccccCCccchhHHHHHHHhc-CCc-hhHhhccchhH-HHHHHHH
Q psy5289 548 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQI-GCFVPCDSATISVVDQIFTRV-GAA-DSQYRGISTFM-MEMKETA 623 (813)
Q Consensus 548 ~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~-g~~vpa~~~~~~~~d~i~~~~-~~~-d~~~~~~s~f~-~e~~~~~ 623 (813)
...+|++++|.|++|+|||||+.+++........ ..|+-.+...-.+..+++... +.. +.+..+ .++ .+..++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g--~Ls~~e~~~l~ 119 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESG--RLDDDQWENLA 119 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHT--CCCHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcC--CCCHHHHHHHH
Confidence 4567899999999999999999998766544211 112222222222333333221 111 112222 222 3445555
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcC-CCEEEEEcC
Q psy5289 624 TVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHR-QPFTLFATH 673 (813)
Q Consensus 624 ~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~-~~~~l~~TH 673 (813)
.+...+.+.+++|.|+|+. +..+ + .+.++.+.+.. ++.+|++=|
T Consensus 120 ~a~~~l~~~~l~I~d~~~~--si~~---i-~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 120 KCFDHLSQKKLFFYDKSYV--RIEQ---I-RLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHSCEEEECCTTC--CHHH---H-HHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHhcCCeEEeCCCCC--cHHH---H-HHHHHHHHHhcCCCCEEEEec
Confidence 5555555667888888743 3322 2 22334444334 566666644
No 177
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.87 E-value=0.00041 Score=69.65 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.9
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
..|++++|+|||||||||+++.++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 46889999999999999999998643
No 178
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.86 E-value=0.0026 Score=61.55 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.7
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+..++|+||.|+||||+++.++..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998654
No 179
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.86 E-value=0.0023 Score=67.55 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.1
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+..++|+||+|+||||+.|.++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 467999999999999999998653
No 180
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.84 E-value=0.0021 Score=62.06 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=20.7
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+..++|+||.|+||||+++.++..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998654
No 181
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.80 E-value=0.00042 Score=66.86 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.3
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+.+++|+|||||||||++|.++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998653
No 182
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.79 E-value=0.00061 Score=69.17 Aligned_cols=144 Identities=17% Similarity=0.121 Sum_probs=73.0
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhhhhhh--ccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHH
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ--IGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK 627 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~~laq--~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~ 627 (813)
..|.++++|||-|+||||++.+++.-..-+. ...+-|....+ +. ..+.+++|..-... ..... .++...+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~~-~~i~srlG~~~~~~-~~~~~----~~i~~~i~ 82 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SI-RNIQSRTGTSLPSV-EVESA----PEILNYIM 82 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-GC-SSCCCCCCCSSCCE-EESST----HHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-HH-HHHHHhcCCCcccc-ccCCH----HHHHHHHH
Confidence 3578999999999999998877654332221 11122222222 11 13455555321100 11111 11222222
Q ss_pred h---CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC-----------hHHHhhcCCCCceEeeEEE
Q psy5289 628 K---CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF-----------HEIALLSRVIPTFRNVQVS 693 (813)
Q Consensus 628 ~---~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~-----------~el~~~~~~~~~v~~~~~~ 693 (813)
. ..++++|++||.-- ++. .+.+ .+..+.+ .|..++++-|+ .++..++|.+..++. .
T Consensus 83 ~~~~~~~~dvViIDEaQ~-l~~----~~ve-~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~~---i 152 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQF-FDD----RICE-VANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLTA---I 152 (223)
T ss_dssp STTSCTTCCEEEECSGGG-SCT----HHHH-HHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECCE---E
T ss_pred HHhhCCCCCEEEEecCcc-CcH----HHHH-HHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecce---e
Confidence 2 14589999999932 221 1222 4455666 58999999993 345556665433322 1
Q ss_pred EEEECCeEEEEEEeccC
Q psy5289 694 ALEQEDNLVLLYQVKPG 710 (813)
Q Consensus 694 ~~~~~~~i~~~y~l~~G 710 (813)
.+.-...-++.+++.+|
T Consensus 153 c~~Cg~~a~~~~r~~~g 169 (223)
T 2b8t_A 153 CNECGAEATHSLRKIDG 169 (223)
T ss_dssp CTTTCSEECEEEEEETT
T ss_pred ccccCCccceeEEecCC
Confidence 11113445666666555
No 183
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.78 E-value=0.00056 Score=66.23 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.7
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.+|++++|+|||||||||++|.++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35789999999999999999998653
No 184
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.76 E-value=0.00025 Score=81.08 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=29.9
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
+.+++++.+..|+.++|+|||||||||+|++++...
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 455677777788999999999999999999985543
No 185
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.76 E-value=0.00041 Score=72.91 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=28.1
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+.+++++....| ++|+||||+||||++|+++..
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHH
Confidence 456777877777 999999999999999999764
No 186
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.74 E-value=0.00023 Score=73.72 Aligned_cols=36 Identities=14% Similarity=-0.047 Sum_probs=33.0
Q ss_pred eeeccccccccCC---ceeEEEEccCCCChhHHHhhhhh
Q psy5289 539 SYIPNDVYFKSGE---VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 539 ~~i~n~v~l~~~~---g~~~~itGpNgsGKSTllr~i~~ 574 (813)
..+.++++|++.+ |++++|+||+||||||+.|.++.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4688899999988 99999999999999999999865
No 187
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.73 E-value=0.0004 Score=76.21 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=31.4
Q ss_pred eeccccccccCCceeEEEEccCCCChhHHHhhhhh
Q psy5289 540 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 540 ~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+.+++++++..|++++|+||||+||||+++.++.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 35668888999999999999999999999999875
No 188
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.73 E-value=0.0073 Score=65.94 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=63.9
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhhhhh-hccccccCCccchhHHHHHHHhcCCc-hhHh-hccchhHHHHHHHHHHH
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFTRVGAA-DSQY-RGISTFMMEMKETATVI 626 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~~la-q~g~~vpa~~~~~~~~d~i~~~~~~~-d~~~-~~~s~f~~e~~~~~~il 626 (813)
..|+++.|.||.|+|||||..+++...... ....|+..+...-.. ...++|.. +++. ....+. .++.+...-+
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~---~a~~~g~d~~~l~i~~~~~~-e~~l~~l~~l 147 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV---YARALGVNTDELLVSQPDNG-EQALEIMELL 147 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHTTCCGGGCEEECCSSH-HHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH---HHHHcCCCHHHceeecCCcH-HHHHHHHHHH
Confidence 468899999999999999999886544321 112333333221111 23455542 1111 011111 2222333223
Q ss_pred HhCCCCcEEEEeCCCCCCC-h-hh----------HHHHHHHHHHHH---HhcCCCEEEEEcCCh
Q psy5289 627 KKCTENSLVIIDELGRGTS-T-FD----------GFGMACSIAREL---ASHRQPFTLFATHFH 675 (813)
Q Consensus 627 ~~~~~~~LlllDEp~~Gtd-~-~d----------~~~i~~~i~~~l---~~~~~~~~l~~TH~~ 675 (813)
.....+++|++|.++.=.. . .+ .......++..| .++.++++|++.|-.
T Consensus 148 ~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~ 211 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVR 211 (366)
T ss_dssp HTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-
T ss_pred HhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 2345789999999986542 1 11 111122333334 344799999998864
No 189
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.72 E-value=0.0004 Score=75.19 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.6
Q ss_pred eeEEEEccCCCChhHHHhhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
+.++|+||||+||||++|.++...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 689999999999999999997653
No 190
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.69 E-value=0.0046 Score=69.50 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=26.3
Q ss_pred ccCCceeEEEEccCCCChhHHHhhhhhhhhh
Q psy5289 548 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL 578 (813)
Q Consensus 548 ~~~~g~~~~itGpNgsGKSTllr~i~~~~~l 578 (813)
....|++++|.||+|+|||||..+++..+..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3567899999999999999999998776543
No 191
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.68 E-value=0.003 Score=76.35 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.1
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
...++.++|+||||+||||++|+++..
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 345678999999999999999998654
No 192
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.67 E-value=0.00071 Score=75.33 Aligned_cols=34 Identities=29% Similarity=0.220 Sum_probs=26.6
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
+.+++ +. .+|.+++|+|||||||||+|++++...
T Consensus 158 ~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 158 NFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34444 43 568899999999999999999986543
No 193
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.63 E-value=0.0032 Score=66.94 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=22.9
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
...+..++|+||+|+||||+.|.++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 345678999999999999999998754
No 194
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.63 E-value=0.0056 Score=61.44 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.2
Q ss_pred eeEEEEccCCCChhHHHhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~ 575 (813)
..++|+||.|+||||+++.++..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998643
No 195
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.59 E-value=0.00083 Score=69.57 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=22.0
Q ss_pred CCceeEEEEccCCCChhHHHhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~ 573 (813)
..|.+++|+|||||||||++|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999999986
No 196
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.57 E-value=0.00095 Score=66.38 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=22.3
Q ss_pred CCceeEEEEccCCCChhHHHhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
..|++++|+|||||||||+++.+..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHh
Confidence 3588999999999999999999754
No 197
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.56 E-value=0.0016 Score=68.34 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.2
Q ss_pred CceeEEEEccCCCChhHHHhhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.+.-++|+||.|+||||+.+.++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999998643
No 198
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.55 E-value=0.01 Score=63.11 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.4
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
..|.+++|+||.|+|||||..+++..
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35678899999999999999998754
No 199
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.53 E-value=0.0059 Score=69.45 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=26.2
Q ss_pred ccccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 542 ~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
..++++....| ++|+||||+||||++|+++...
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh
Confidence 44556666655 8999999999999999997643
No 200
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.53 E-value=0.001 Score=72.65 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.9
Q ss_pred eeEEEEccCCCChhHHHhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~ 575 (813)
-.++|+|+||+|||||++.+...
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998543
No 201
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.49 E-value=0.0012 Score=65.88 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=23.4
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
...+.+++|+|||||||||+++.++..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999998653
No 202
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.48 E-value=0.0092 Score=61.50 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.7
Q ss_pred eEEEEccCCCChhHHHhhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~ 575 (813)
-++|+||+|+||||++|.++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3899999999999999998754
No 203
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.47 E-value=0.0011 Score=74.30 Aligned_cols=28 Identities=36% Similarity=0.608 Sum_probs=24.1
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
...+++++|+|||||||||+|++|+.+.
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 3457899999999999999999997654
No 204
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.47 E-value=0.0013 Score=65.74 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.4
Q ss_pred eeEEEEccCCCChhHHHhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.+.+|+|||||||||++.+|..+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 59999999999999999997543
No 205
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.46 E-value=0.0031 Score=66.76 Aligned_cols=24 Identities=17% Similarity=-0.110 Sum_probs=20.6
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
...++|.||.|+|||++.++++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999998653
No 206
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.45 E-value=0.00089 Score=69.16 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=27.7
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+.+++++....| ++|+||||+||||++|+++..
T Consensus 40 ~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 40 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 456777777766 999999999999999998764
No 207
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.43 E-value=0.0058 Score=65.38 Aligned_cols=122 Identities=9% Similarity=0.102 Sum_probs=64.5
Q ss_pred cccCCceeEEEEccCCCChhHHHhhhhhhhhhhh-ccccccCCccchhHHHHHHHhc-CCc-hhHhhccchhH-HHHHHH
Q psy5289 547 FKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IGCFVPCDSATISVVDQIFTRV-GAA-DSQYRGISTFM-MEMKET 622 (813)
Q Consensus 547 l~~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-~g~~vpa~~~~~~~~d~i~~~~-~~~-d~~~~~~s~f~-~e~~~~ 622 (813)
-...+|++++|.|+.|+|||||+.+++....... -..|+..+...-.+..++.... +.. +.+..+...++ .+..++
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l 142 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKL 142 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHH
Confidence 3457799999999999999999999876554322 1123332222222333333321 221 11222211121 233344
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCE--EEEEcCC
Q psy5289 623 ATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPF--TLFATHF 674 (813)
Q Consensus 623 ~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~--~l~~TH~ 674 (813)
..+...+....+++.|+|+ ++..+ +.. .++.+..+.++. +|++-|.
T Consensus 143 ~~a~~~l~~~~i~i~d~~~--~~~~~---i~~-~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 143 SMAIGEISNSNINIFDKAG--QSVNY---IWS-KTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHHHHHHTSCEEEECCSC--CBHHH---HHH-HHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHHHHhCCCEEEECCCC--CCHHH---HHH-HHHHHHHhcCCCCeEEEEeCc
Confidence 4444444467899999885 33322 323 333444435677 8888664
No 208
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.38 E-value=0.00018 Score=73.42 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=24.6
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
+++|. . ++++|+|||||||||+|++|+.+.
T Consensus 22 ~~~~~--~-~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 22 TFDLD--E-LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp EECHH--H-HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEc--C-cEEEEECCCCCCHHHHHHHHhccc
Confidence 45554 2 789999999999999999987654
No 209
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.37 E-value=0.00057 Score=80.14 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=32.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
..+.+.+++....|+.++|+||||+||||++|+++...
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 44567778877888999999999999999999997654
No 210
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.35 E-value=0.0013 Score=70.67 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.6
Q ss_pred eeEEEEccCCCChhHHHhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~ 575 (813)
++++|||||||||||+||.+...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 58999999999999999998643
No 211
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.33 E-value=0.0011 Score=69.44 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=27.8
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
+.+++++....| ++|+||||+||||++|+++...
T Consensus 64 ~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 64 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 455677777766 8999999999999999987643
No 212
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.33 E-value=0.0068 Score=67.58 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.0
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+.+++++||+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 367999999999999999888764
No 213
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.30 E-value=0.015 Score=61.66 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=64.7
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhh---hccccccCCccchhHHHHHHHhcCCc-hhHhhccchhHHHH-HHHH
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA---QIGCFVPCDSATISVVDQIFTRVGAA-DSQYRGISTFMMEM-KETA 623 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~la---q~g~~vpa~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~-~~~~ 623 (813)
...| ++.|.||.|+|||||.-+++...... ....|+-++..- .. ....++|.. +++.--..+-..++ .++.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~-~~--~ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI-TP--AYLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC-CH--HHHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh-hH--HHHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 3567 89999999999999987765443321 122344443321 11 235677753 23221111112222 3333
Q ss_pred HHHH--hCCCCcEEEEeCCCCCCC--hhh-------------HHHHHHHHHH--HHHhcCCCEEEEEcCChH
Q psy5289 624 TVIK--KCTENSLVIIDELGRGTS--TFD-------------GFGMACSIAR--ELASHRQPFTLFATHFHE 676 (813)
Q Consensus 624 ~il~--~~~~~~LlllDEp~~Gtd--~~d-------------~~~i~~~i~~--~l~~~~~~~~l~~TH~~e 676 (813)
..+. ....++||++|-...=.. ..+ ...++.++.. .++++.++++|++-|-..
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 3332 235789999999866542 111 1122222211 123347999999999765
No 214
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.30 E-value=0.0011 Score=70.79 Aligned_cols=26 Identities=15% Similarity=-0.003 Sum_probs=21.8
Q ss_pred ceeEEEEccCCCChhHHHhhhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVSVF 577 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~~~ 577 (813)
+.-++|+||.|+|||+++++++....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999876443
No 215
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.27 E-value=0.0011 Score=70.51 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=22.1
Q ss_pred CCceeEEEEccCCCChhHHHhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
..|++++|+|||||||||||++++.
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHST
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcc
Confidence 3478999999999999999999854
No 216
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.25 E-value=0.0015 Score=69.69 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.8
Q ss_pred CCceeEEEEccCCCChhHHHhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~ 573 (813)
-.|++++|+||||+|||||+++++
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999999986
No 217
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.22 E-value=0.0021 Score=64.05 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=23.0
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhh
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
...+.+++|+||+||||||+.+.++.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999865
No 218
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.17 E-value=0.0019 Score=64.29 Aligned_cols=22 Identities=23% Similarity=0.054 Sum_probs=19.8
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+++|+|||||||||+.+.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999865
No 219
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.16 E-value=0.0019 Score=70.23 Aligned_cols=30 Identities=13% Similarity=0.081 Sum_probs=24.2
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhh
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
++++.. .|++++|+||||+|||||++.++.
T Consensus 208 ~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 208 PLEEAL-TGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp HHHHHH-TTSEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHhc-CCCEEEEECCCCccHHHHHHHHhc
Confidence 444433 478999999999999999999854
No 220
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.13 E-value=0.00091 Score=71.25 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=23.7
Q ss_pred cccCCceeEEEEccCCCChhHHHhhhhh
Q psy5289 547 FKSGEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 547 l~~~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
++..+|++++|+||||+|||||+++++.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 3344689999999999999999999854
No 221
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.11 E-value=0.0075 Score=71.30 Aligned_cols=119 Identities=11% Similarity=0.076 Sum_probs=62.2
Q ss_pred ccCCceeEEEEccCCCChhHHHhhhhhhhhh-hhccccccCCc-cchhHHHHHHHhc------------CCchhHh--hc
Q psy5289 548 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDS-ATISVVDQIFTRV------------GAADSQY--RG 611 (813)
Q Consensus 548 ~~~~g~~~~itGpNgsGKSTllr~i~~~~~l-aq~g~~vpa~~-~~~~~~d~i~~~~------------~~~d~~~--~~ 611 (813)
....++.++|+|+||+|||||++.+...... ...|....... ..... ...-..+ +...++. .|
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~-~e~~~giti~~~~~~~~~~~~~~nliDTpG 83 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTP-EAKLHRTTVRTGVAPLLFRGHRVFLLDAPG 83 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSH-HHHHTTSCCSCEEEEEEETTEEEEEEECCC
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCH-HHHhcCCeEEecceEEeeCCEEEEEEeCCC
Confidence 3456889999999999999999998643211 11121100000 00000 0000000 1111111 23
Q ss_pred cchhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH
Q psy5289 612 ISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA 678 (813)
Q Consensus 612 ~s~f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~ 678 (813)
...|..++.+ .++ ..+..++++| ++.|.++... .+++.+.. .+.+++++.|-.++.
T Consensus 84 ~~~f~~~~~~---~l~-~ad~~ilVvD-~~~g~~~qt~-----~~~~~~~~-~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRG---ALE-AADAALVAVS-AEAGVQVGTE-----RAWTVAER-LGLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHH---HHH-HCSEEEEEEE-TTTCSCHHHH-----HHHHHHHH-TTCCEEEEEECGGGC
T ss_pred ccchHHHHHH---HHh-hcCcEEEEEc-CCcccchhHH-----HHHHHHHH-ccCCEEEEecCCchh
Confidence 4455544333 232 3467899999 9899886543 23344444 477788888877653
No 222
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.10 E-value=0.0022 Score=68.79 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=20.4
Q ss_pred eeEEEEccCCCChhHHHhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~ 575 (813)
-+++|+|||||||||+++.++.+
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998654
No 223
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.08 E-value=0.0022 Score=63.63 Aligned_cols=21 Identities=29% Similarity=0.036 Sum_probs=19.4
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
+++|+|||||||||+.+.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999865
No 224
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.04 E-value=0.0027 Score=61.63 Aligned_cols=26 Identities=19% Similarity=0.049 Sum_probs=22.4
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
..|.+++|+|++||||||+.+.++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998653
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.04 E-value=0.034 Score=58.86 Aligned_cols=31 Identities=16% Similarity=0.030 Sum_probs=25.8
Q ss_pred cccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 545 VYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 545 v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
++++.. +++++++||||+||||++..++...
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 556655 8899999999999999999987543
No 226
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.01 E-value=0.0025 Score=64.25 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.4
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+.+++|+||+||||||+.+.++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 227
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.94 E-value=0.0014 Score=75.23 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=27.1
Q ss_pred cccccccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 543 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 543 n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.+++++..+| +.+|+|+|||||||+|.+|.++
T Consensus 52 ~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 52 TQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp SCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred eeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 4666777776 9999999999999999999655
No 228
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.92 E-value=0.013 Score=59.42 Aligned_cols=139 Identities=13% Similarity=0.075 Sum_probs=71.3
Q ss_pred CceeEEEEccCCCChhHHHhhhhhhhhhhhcc--ccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG--CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK 628 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~~~laq~g--~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~ 628 (813)
.|.+.+++||=||||||.+-..+.-...+..- .+-|+...+.+ ..+.+++|..-... +.... .+ ++..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg--~~i~sr~G~~~~a~-~i~~~-~d------i~~~ 87 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDRNTMEAL-PACLL-RD------VAQE 87 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-------------CEEE-EESSG-GG------GHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch--HHHHhhcCCeeEEE-ecCCH-HH------HHHH
Confidence 47899999999999998766654433332221 12244443434 45777776431110 11111 11 2222
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC-----------hHHHhhcCCCCceEeeEEEEEEE
Q psy5289 629 CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF-----------HEIALLSRVIPTFRNVQVSALEQ 697 (813)
Q Consensus 629 ~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~-----------~el~~~~~~~~~v~~~~~~~~~~ 697 (813)
+.+.++|++||.---++ ...+++.+.+ .|..||++-++ .+|..++|.+..++. ..+.-
T Consensus 88 ~~~~dvViIDEaQF~~~-------v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelka---IC~~C 156 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD-------IVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTA---VCMEC 156 (234)
T ss_dssp HTTCSEEEESSGGGCTT-------HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECCE---ECTTT
T ss_pred hccCCEEEEEchhhhhh-------HHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeeee---EecCc
Confidence 25679999999844332 3456666766 68999999998 344455554433221 11111
Q ss_pred CCeEEEEEEeccC
Q psy5289 698 EDNLVLLYQVKPG 710 (813)
Q Consensus 698 ~~~i~~~y~l~~G 710 (813)
...-+|.+++..+
T Consensus 157 g~~A~~t~R~~~~ 169 (234)
T 2orv_A 157 FREAAYTKRLGTE 169 (234)
T ss_dssp CSEECEEEESSCC
T ss_pred CCcceEEEEEcCC
Confidence 4456777777554
No 229
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.89 E-value=0.0033 Score=68.96 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=21.0
Q ss_pred eeEEEEccCCCChhHHHhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.+.+|+|||||||||+|.+|...
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~~ 48 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFFA 48 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 59999999999999999999763
No 230
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.86 E-value=0.0038 Score=61.11 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=23.7
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhh
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
++++....+..++|+|+.||||||+.+.++-
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456666778999999999999999998754
No 231
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.81 E-value=0.0047 Score=71.29 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=28.3
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
+..++++.. .|..++|+||||+||||++|+++...
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 345556655 57899999999999999999997654
No 232
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.76 E-value=0.038 Score=56.67 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.7
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
.-++|+||.|+||||+.+.++.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999865
No 233
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.74 E-value=0.0038 Score=62.14 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCceeEEEEccCCCChhHHHhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
..|.+++|+||+||||||+.+.++.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999754
No 234
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.023 Score=63.10 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.8
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.+-+++.||.|+|||++.|++|.-
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 455999999999999999998753
No 235
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.73 E-value=0.0052 Score=62.14 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=30.9
Q ss_pred CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHH
Q psy5289 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEI 677 (813)
Q Consensus 631 ~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el 677 (813)
+|+++|+||++.-..+..+....+..+..+.. .|..++.++|-..+
T Consensus 84 ~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~-sgidVitT~Nlqh~ 129 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPGSRHTKRWQDIQELLA-AGIDVYTTVNVQHL 129 (228)
T ss_dssp CCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH-TTCEEEEEEEGGGB
T ss_pred CCCEEEEeCCCCCCcccchhHHHHHHHHHHHc-CCCCEEEEcccccc
Confidence 79999999998653444444444555555555 58888888885433
No 236
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.72 E-value=0.02 Score=63.59 Aligned_cols=31 Identities=16% Similarity=0.181 Sum_probs=25.5
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
++++. .+++++++||||+||||++..++...
T Consensus 92 ~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp CCCCC--SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccCC--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555 57899999999999999999987543
No 237
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.053 Score=60.35 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.8
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.+-+++.||.|+|||++.|++|.-
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999998753
No 238
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.67 E-value=0.033 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.041 Sum_probs=19.8
Q ss_pred eeEEEEccCCCChhHHHhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.-++|+||.|+|||++.|.++..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 45889999999999999998643
No 239
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.66 E-value=0.0051 Score=62.66 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.0
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
..|.+++|.||+||||||+++.++..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999999998653
No 240
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.66 E-value=0.039 Score=70.84 Aligned_cols=122 Identities=13% Similarity=0.155 Sum_probs=64.5
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhhh-ccccccCCccchhHHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHH
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IGCFVPCDSATISVVDQIFTRVGAA-DSQYRGISTFMMEMKETATVI 626 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-~g~~vpa~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il 626 (813)
..+|++++|.||+|+|||||+.+++..+.... ...|+-.+...-.+ ...++|.. +++.-...+-..++.+...-+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql---~A~~lGvd~~~L~i~~~~~leei~~~l~~l 805 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDTGEQALEICDAL 805 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH---HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHH---HHHHcCCChhheEEecCCcHHHHHHHHHHH
Confidence 45789999999999999999999876554321 11233333222111 13444532 111100011112333333222
Q ss_pred HhCCCCcEEEEeCCCCCCChh-------------hHHHHHHHHHHHH---HhcCCCEEEEEcCC
Q psy5289 627 KKCTENSLVIIDELGRGTSTF-------------DGFGMACSIAREL---ASHRQPFTLFATHF 674 (813)
Q Consensus 627 ~~~~~~~LlllDEp~~Gtd~~-------------d~~~i~~~i~~~l---~~~~~~~~l~~TH~ 674 (813)
.....+++|++|++..-.... ....++. ++..| +++.++++|++.|-
T Consensus 806 v~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~-~Lr~Lk~lAke~gi~VIlinql 868 (1706)
T 3cmw_A 806 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ-AMRKLAGNLKQSNTLLIFINQI 868 (1706)
T ss_dssp HHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHH-HHHHHHHHHHHHTCEEEEEECE
T ss_pred HHccCCCEEEEechhhhccccccccccCccchhHHHHHHHH-HHHHHHHHHHHcCCEEEEEecC
Confidence 223589999999997655210 1122322 22222 33369999999884
No 241
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.63 E-value=0.0026 Score=61.76 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.8
Q ss_pred eeEEEEccCCCChhHHHhhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
++++|+|||||||||+++.++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999986543
No 242
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.59 E-value=0.0048 Score=60.55 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.6
Q ss_pred eEEEEccCCCChhHHHhhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~ 575 (813)
.++|+||||+|||||++.+...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999998653
No 243
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.028 Score=61.71 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.8
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.+-+++.||.|+|||++.|++|.-
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 355999999999999999998753
No 244
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.57 E-value=0.035 Score=58.62 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.0
Q ss_pred eeEEEEccCCCChhHHHhhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
..++|+||+|+||||+.|.++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 468999999999999999997654
No 245
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.55 E-value=0.064 Score=60.08 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=26.2
Q ss_pred ccCCceeEEEEccCCCChhHHHhhhhhhhhh
Q psy5289 548 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL 578 (813)
Q Consensus 548 ~~~~g~~~~itGpNgsGKSTllr~i~~~~~l 578 (813)
...+|++++|.|+.|+|||||.-+++..+..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 3467899999999999999999998765543
No 246
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.54 E-value=0.0036 Score=72.09 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.8
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
..|++++|+|+|||||||++|.++...
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhh
Confidence 468999999999999999999987653
No 247
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.53 E-value=0.0047 Score=61.19 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.4
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
..+++|+||+||||||+.+.++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999854
No 248
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.52 E-value=0.038 Score=60.05 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.4
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
...++|+||.|+||||+.+.++.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999864
No 249
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.49 E-value=0.048 Score=62.16 Aligned_cols=30 Identities=17% Similarity=-0.003 Sum_probs=25.4
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhh
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFL 578 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~l 578 (813)
...|++++|.|+.|+|||||.-+++.....
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 457899999999999999999998765543
No 250
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.49 E-value=0.0074 Score=61.53 Aligned_cols=22 Identities=27% Similarity=0.063 Sum_probs=19.3
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
--++|+|++|+|||||++.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcC
Confidence 3589999999999999999854
No 251
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.48 E-value=0.0069 Score=59.15 Aligned_cols=27 Identities=19% Similarity=0.070 Sum_probs=23.3
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
...|.+++|+|++||||||+.+.++..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346789999999999999999998653
No 252
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.48 E-value=0.018 Score=62.00 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.2
Q ss_pred eEEEEccCCCChhHHHhhhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~~ 576 (813)
.++|+||+|+||||+++.++...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999987653
No 253
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.47 E-value=0.035 Score=59.54 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.5
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
..++|+||.|+||||+.+.++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4589999999999999999854
No 254
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.47 E-value=0.051 Score=57.27 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=20.5
Q ss_pred eeEEEEccCCCChhHHHhhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
.-++|+||.|+||||+.+.++...
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999987543
No 255
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.45 E-value=0.032 Score=61.35 Aligned_cols=88 Identities=19% Similarity=0.121 Sum_probs=45.5
Q ss_pred CceeEEE--EccCCCChhHHHhhhhhhhhhh------h-ccccccCCc--cchhHHHHHHHhcCCchhHhhccchhHHHH
Q psy5289 551 EVSFNLV--TGPNMGGKSTYIRSIGVSVFLA------Q-IGCFVPCDS--ATISVVDQIFTRVGAADSQYRGISTFMMEM 619 (813)
Q Consensus 551 ~g~~~~i--tGpNgsGKSTllr~i~~~~~la------q-~g~~vpa~~--~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~ 619 (813)
.+..++| +||.|+||||+++.++-...-. . ...++.+.. ....++..++..++.... ..+.+ ...-.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~~~~~ 126 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ-VRGAP-ALDIL 126 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC-CTTCC-HHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC-CCCCC-HHHHH
Confidence 3567888 9999999999999986432111 0 112333211 122344555655553211 00111 11112
Q ss_pred HHHHHHHHhCCCCcEEEEeCC
Q psy5289 620 KETATVIKKCTENSLVIIDEL 640 (813)
Q Consensus 620 ~~~~~il~~~~~~~LlllDEp 640 (813)
..+...+.....+-+|+|||.
T Consensus 127 ~~l~~~l~~~~~~~llvlDe~ 147 (412)
T 1w5s_A 127 KALVDNLYVENHYLLVILDEF 147 (412)
T ss_dssp HHHHHHHHHHTCEEEEEEEST
T ss_pred HHHHHHHHhcCCeEEEEEeCH
Confidence 223333433456789999998
No 256
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.43 E-value=0.0063 Score=59.18 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.9
Q ss_pred CceeEEEEccCCCChhHHHhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~ 573 (813)
.|.+++|+||+||||||+.+.++
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999985
No 257
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.42 E-value=0.0054 Score=66.40 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=28.8
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+.+++++....+.+++|+|+||+||||+++.++..
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 34456666677899999999999999999998654
No 258
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.41 E-value=0.0057 Score=60.30 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.5
Q ss_pred eEEEEccCCCChhHHHhhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~ 575 (813)
.++|+||||+|||||++.+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999998654
No 259
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.31 E-value=0.023 Score=60.77 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.6
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
..-++|+||.|+|||++.|.++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999998653
No 260
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.057 Score=60.05 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.7
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.+-+++.||.|+|||++.|++|.-
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 356999999999999999998753
No 261
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.20 E-value=0.025 Score=58.71 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.5
Q ss_pred CceeEEEEccCCCChhHHHhhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
....++|+||.|+||||+.+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4467999999999999999998754
No 262
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.18 E-value=0.06 Score=57.61 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.8
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+.-++|+||.|+||||+.|.++..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 356899999999999999998753
No 263
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.12 E-value=0.068 Score=54.15 Aligned_cols=28 Identities=25% Similarity=0.146 Sum_probs=24.0
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
...|++++|.|+.|+|||||.-+++...
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999876543
No 264
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.08 E-value=0.0093 Score=59.61 Aligned_cols=27 Identities=22% Similarity=0.132 Sum_probs=23.4
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
...|.+++|+|++||||||+.+.++..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998653
No 265
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.05 E-value=0.0097 Score=71.96 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=25.5
Q ss_pred ccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 546 YFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 546 ~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
.+....+..++|+||+|+||||+.|+++...
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 3444567789999999999999999997654
No 266
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.01 E-value=0.064 Score=52.81 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.4
Q ss_pred eEEEEccCCCChhHHHhhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~ 575 (813)
.++|+||.|+||||+++.++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998643
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.97 E-value=0.0098 Score=56.80 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=18.9
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
+++|+||.||||||+.+.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999753
No 268
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.93 E-value=0.035 Score=62.98 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.4
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
.-++|+||.|+|||++.|.++.
T Consensus 239 ~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHH
Confidence 3589999999999999999854
No 269
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.92 E-value=0.031 Score=52.19 Aligned_cols=24 Identities=17% Similarity=-0.040 Sum_probs=20.3
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+.-++|+||.|+|||++.|.++..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 345899999999999999998643
No 270
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.90 E-value=0.066 Score=58.08 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.1
Q ss_pred eeEEEEccCCCChhHHHhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.-++|+||.|+||||+.|.++..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999998754
No 271
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.87 E-value=0.077 Score=69.06 Aligned_cols=123 Identities=13% Similarity=0.156 Sum_probs=66.0
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhhh-ccccccCCccchhHHHHHHHhcCCc-hhHhhccchhHHHHHHHHHHH
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IGCFVPCDSATISVVDQIFTRVGAA-DSQYRGISTFMMEMKETATVI 626 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-~g~~vpa~~~~~~~~d~i~~~~~~~-d~~~~~~s~f~~e~~~~~~il 626 (813)
...|+++.|.||.|+|||||..+++..+.... ...|+-.+...-.. ...++|.. +++.-....-..++.+.+..+
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~---~a~~lGvd~~~L~I~~~~~~e~il~~~~~l 456 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH---HHHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHH---HHHHcCCCHHHeEEeCCCCHHHHHHHHHHH
Confidence 45789999999999999999999876543221 11233333221111 23455532 111100011112333333333
Q ss_pred HhCCCCcEEEEeCCCCCCChh-------------hHHHHHHHHHHHH---HhcCCCEEEEEcCCh
Q psy5289 627 KKCTENSLVIIDELGRGTSTF-------------DGFGMACSIAREL---ASHRQPFTLFATHFH 675 (813)
Q Consensus 627 ~~~~~~~LlllDEp~~Gtd~~-------------d~~~i~~~i~~~l---~~~~~~~~l~~TH~~ 675 (813)
.....+++|++|.+..-.... ....+.. .+..| .++.++++|++.|-.
T Consensus 457 v~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~-~Lr~L~~lake~~i~VIlinQl~ 520 (2050)
T 3cmu_A 457 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ-AMRKLAGNLKQSNTLLIFINQIR 520 (2050)
T ss_dssp HHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHH-HHHHHHHHHHTTTCEEEEEECCE
T ss_pred HHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHH-HHHHHHHHHHHcCCeEEEEeecc
Confidence 334689999999987655311 1112322 33333 344799999999863
No 272
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.83 E-value=0.1 Score=67.09 Aligned_cols=122 Identities=14% Similarity=0.171 Sum_probs=65.7
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhhhhh-ccccccCCccchhHHHHHHHhcCCc-hhHhh-ccchhHHHHHHHHHH
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IGCFVPCDSATISVVDQIFTRVGAA-DSQYR-GISTFMMEMKETATV 625 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~laq-~g~~vpa~~~~~~~~d~i~~~~~~~-d~~~~-~~s~f~~e~~~~~~i 625 (813)
...|+++.|.||.|+|||||.-+++..+.... ...|+..+...-.. ...++|.. +++.- ...+ ..++.+....
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~---~a~~lGvd~~~L~i~~~~~-~e~~l~~l~~ 455 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDT-GEQALEICDA 455 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH---HHHHTTCCGGGCEEECCSS-HHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHH---HHHHcCCCHHHeEEcCCCC-HHHHHHHHHH
Confidence 45789999999999999999999866543321 22344333321111 24455532 22111 1111 1233333332
Q ss_pred HHhCCCCcEEEEeCCCCCCChh-------------hHHHHHHHHHHHH---HhcCCCEEEEEcCCh
Q psy5289 626 IKKCTENSLVIIDELGRGTSTF-------------DGFGMACSIAREL---ASHRQPFTLFATHFH 675 (813)
Q Consensus 626 l~~~~~~~LlllDEp~~Gtd~~-------------d~~~i~~~i~~~l---~~~~~~~~l~~TH~~ 675 (813)
+.....+++|++|.+..=.... ....+. .++..| .++.++++|++.|-.
T Consensus 456 lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s-~~Lr~L~~~ak~~~v~VI~inQl~ 520 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS-QAMRKLAGNLKQSNTLLIFINQIR 520 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHH-HHHHHHHHHHHHHTCEEEEEECEE
T ss_pred HHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHH-HHHHHHHHHHHHcCCEEEEEeecc
Confidence 2234689999999997655311 111122 233333 233699999998863
No 273
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.82 E-value=0.012 Score=59.82 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.9
Q ss_pred CCceeEEEEccCCCChhHHHhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
..+.+++|+|++||||||+.+.++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999754
No 274
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.77 E-value=0.012 Score=56.62 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.3
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+.+++|+||.||||||+.|.++-
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999753
No 275
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.72 E-value=0.024 Score=55.94 Aligned_cols=142 Identities=14% Similarity=0.153 Sum_probs=70.3
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhhhhhhcc--ccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHH
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG--CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK 627 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g--~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~ 627 (813)
..|.+.+++||-||||||.+-.++.-..-+..- .+-|....+.+ ...+.+++|..-. ....+... .++.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~-~~~i~s~~g~~~~-a~~~~~~~-------~i~~ 76 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYS-KEDVVSHMGEKEQ-AVAIKNSR-------EILK 76 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--------CEEECTTSCEEE-CEEESSST-------HHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccch-HHHHHhhcCCcee-eEeeCCHH-------HHHH
Confidence 457899999999999999887664433222111 11122211111 0123334442210 00111111 2333
Q ss_pred hCC-CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC-----------hHHHhhcCCCCceEeeEEEEE
Q psy5289 628 KCT-ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF-----------HEIALLSRVIPTFRNVQVSAL 695 (813)
Q Consensus 628 ~~~-~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~-----------~el~~~~~~~~~v~~~~~~~~ 695 (813)
.+. +.++|++||.-- .++. +.+ .++.+.. .|..+|++.++ .+|..++|.+..++. ...
T Consensus 77 ~~~~~~dvViIDEaqf-l~~~----~v~-~l~~l~~-~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~~---iC~ 146 (191)
T 1xx6_A 77 YFEEDTEVIAIDEVQF-FDDE----IVE-IVNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQA---ICV 146 (191)
T ss_dssp HCCTTCSEEEECSGGG-SCTH----HHH-HHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCE---ECT
T ss_pred HHhccCCEEEEECCCC-CCHH----HHH-HHHHHHh-CCCEEEEEecccccccCcCccHHHHHHHcccEEeeee---Ecc
Confidence 333 468999999633 3322 222 4556666 48899999884 355566665433321 111
Q ss_pred EECCeEEEEEEeccC
Q psy5289 696 EQEDNLVLLYQVKPG 710 (813)
Q Consensus 696 ~~~~~i~~~y~l~~G 710 (813)
.-...-+|.+++..|
T Consensus 147 ~Cg~~a~~~~r~~~g 161 (191)
T 1xx6_A 147 VCGNPATRTQRLING 161 (191)
T ss_dssp TTSSEECEEEEEETT
T ss_pred ccCCcceEEEEEcCC
Confidence 112345666676665
No 276
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.68 E-value=0.013 Score=64.38 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.5
Q ss_pred CCceeEEEEccCCCChhHHHhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
..|..++|+|+||+|||||++++..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4578999999999999999999865
No 277
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.66 E-value=0.038 Score=55.27 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=55.2
Q ss_pred eeccccccc--cCCceeEEEEccCCCChhHHHhhhhhhhhhhhcc--ccccCCccchhHHHHHHHhcCCchhHhhccchh
Q psy5289 540 YIPNDVYFK--SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG--CFVPCDSATISVVDQIFTRVGAADSQYRGISTF 615 (813)
Q Consensus 540 ~i~n~v~l~--~~~g~~~~itGpNgsGKSTllr~i~~~~~laq~g--~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f 615 (813)
.||.+-.+. ...|.+.+++||=||||||.+-..+.-...+..- .+-|+...+.+ ...+.+++|..-.. .+.+..
T Consensus 14 ~~~~~~~~~~~~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~g-e~~i~s~~g~~~~a-~~~~~~ 91 (214)
T 2j9r_A 14 LVPRGSHMYLINQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYS-EEDVVSHNGLKVKA-VPVSAS 91 (214)
T ss_dssp -----CCCCCCCCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCE-EECSSG
T ss_pred cccCCccccccCCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcch-HHHHHhhcCCeeEE-eecCCH
Confidence 445444332 3568999999999999999887765444333222 12233322222 12355665532110 011111
Q ss_pred HHHHHHHHHHHHhCC-CCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCC
Q psy5289 616 MMEMKETATVIKKCT-ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF 674 (813)
Q Consensus 616 ~~e~~~~~~il~~~~-~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~ 674 (813)
..++..+. +.++|++||.-- .++. +. .+++.+.. .|..|+++-++
T Consensus 92 -------~~~~~~~~~~~dvViIDEaQF-~~~~----~V-~~l~~l~~-~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 92 -------KDIFKHITEEMDVIAIDEVQF-FDGD----IV-EVVQVLAN-RGYRVIVAGLD 137 (214)
T ss_dssp -------GGGGGGCCSSCCEEEECCGGG-SCTT----HH-HHHHHHHH-TTCEEEEEECS
T ss_pred -------HHHHHHHhcCCCEEEEECccc-CCHH----HH-HHHHHHhh-CCCEEEEEecc
Confidence 12222232 478999999833 2221 22 34555665 48899999993
No 278
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.62 E-value=0.065 Score=60.10 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.2
Q ss_pred eeEEEEccCCCChhHHHhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~ 575 (813)
..++|+||.|+||||+.+.++..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998654
No 279
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.084 Score=58.33 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=20.8
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.+-+++.||.|+|||++.|++|.-
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 355999999999999999998753
No 280
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.59 E-value=0.014 Score=60.26 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.4
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+++|+||+||||||+-+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999999864
No 281
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.59 E-value=0.05 Score=58.91 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.1
Q ss_pred eeEEEEccCCCChhHHHhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~ 575 (813)
..++|+||.|+||||+++.++..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998643
No 282
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.55 E-value=0.054 Score=58.90 Aligned_cols=25 Identities=24% Similarity=0.021 Sum_probs=21.5
Q ss_pred CceeEEEEccCCCChhHHHhhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.+..++|+||.|+||||+++.++..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998654
No 283
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.53 E-value=0.018 Score=56.16 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.1
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+.+++|+|+.||||||+.+.++-
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999753
No 284
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.50 E-value=0.016 Score=62.86 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.2
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+.+++|+||+|||||||++.++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999998653
No 285
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.48 E-value=0.014 Score=60.29 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=21.8
Q ss_pred CCceeEEEEccCCCChhHHHhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
..+.+++|+||+||||||+.+.++.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999999854
No 286
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.48 E-value=0.018 Score=57.73 Aligned_cols=23 Identities=26% Similarity=0.143 Sum_probs=20.6
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+.+++|+|++||||||+.+.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 287
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.40 E-value=0.15 Score=55.04 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.3
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+..++|+||.|+||||+.+.++..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998754
No 288
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.36 E-value=0.017 Score=56.08 Aligned_cols=23 Identities=22% Similarity=-0.000 Sum_probs=20.4
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
|.+++|+||.||||||+.+.++-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999754
No 289
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.33 E-value=0.016 Score=55.86 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=18.9
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
.++|+||+||||||+.+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.31 E-value=0.019 Score=55.15 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=19.7
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+++|+||+||||||+.+.++-
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999764
No 291
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.28 E-value=0.12 Score=67.21 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=24.6
Q ss_pred cCCceeEEEEccCCCChhHHHhhhhhhhh
Q psy5289 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVF 577 (813)
Q Consensus 549 ~~~g~~~~itGpNgsGKSTllr~i~~~~~ 577 (813)
+..|+.+.|+||.|+|||||..+++..+.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999865443
No 292
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.27 E-value=0.14 Score=57.10 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.5
Q ss_pred CceeEEEEccCCCChhHHHhhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
..+-+++.||.|+|||++.|++|.-
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4466999999999999999998753
No 293
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.25 E-value=0.054 Score=66.01 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=21.0
Q ss_pred ceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
..-++|+||+|+||||+++.++...
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3457999999999999999987644
No 294
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.23 E-value=0.019 Score=55.78 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=19.7
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+++|+||+||||||+++.+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4799999999999999999754
No 295
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.22 E-value=0.02 Score=60.26 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=20.7
Q ss_pred CceeEEEEccCCCChhHHHhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~ 573 (813)
.+.+++|+||+||||||+.+.++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999975
No 296
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.17 E-value=0.12 Score=54.88 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.8
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
..++|+||.|+||||+.+.++.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999864
No 297
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.15 E-value=0.03 Score=62.82 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.8
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
..-++|+||.|+||||+.+.++..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998754
No 298
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.15 E-value=0.057 Score=59.34 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.3
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+.-++|+||.|+|||++.+.++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999854
No 299
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.15 E-value=0.02 Score=54.49 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=18.2
Q ss_pred eeEEEEccCCCChhHHHhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSI 572 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i 572 (813)
.+++|+||.||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999987
No 300
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.12 E-value=0.0088 Score=64.54 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=25.7
Q ss_pred cccccccCCcee--EEEEccCCCChhHHHhhhhhhh
Q psy5289 543 NDVYFKSGEVSF--NLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 543 n~v~l~~~~g~~--~~itGpNgsGKSTllr~i~~~~ 576 (813)
+.+...+..|++ ++++||+|+||||+++.++...
T Consensus 35 ~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 35 TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344444445666 9999999999999999987653
No 301
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.10 E-value=0.047 Score=62.44 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.4
Q ss_pred eeEEEEccCCCChhHHHhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~ 575 (813)
..++|+||.|+||||+.+.++..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998653
No 302
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.00 E-value=0.025 Score=54.71 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.4
Q ss_pred CceeEEEEccCCCChhHHHhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~ 573 (813)
.+.+++|+|+.||||||+.+.++
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 35689999999999999999875
No 303
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.99 E-value=0.022 Score=58.03 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.1
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+-+++|+||+||||||+.+.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999853
No 304
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.97 E-value=0.021 Score=56.08 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=18.0
Q ss_pred eeEEEEccCCCChhHHHhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSI 572 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i 572 (813)
+.++|+||+|+||||+++.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999986
No 305
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.93 E-value=0.025 Score=54.24 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.6
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
++..++|+|++|+|||||++.+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999854
No 306
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.90 E-value=0.016 Score=62.53 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=27.1
Q ss_pred eccccccccCCcee--EEEEccCCCChhHHHhhhhhh
Q psy5289 541 IPNDVYFKSGEVSF--NLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 541 i~n~v~l~~~~g~~--~~itGpNgsGKSTllr~i~~~ 575 (813)
+...+++....|++ ++|+||+|+||||+.|.++..
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 34455555556666 999999999999999998653
No 307
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.83 E-value=0.025 Score=53.66 Aligned_cols=22 Identities=23% Similarity=0.083 Sum_probs=19.4
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
-.++|+|++|+|||||++.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999854
No 308
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.78 E-value=0.022 Score=55.07 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=16.0
Q ss_pred ceeEEEEccCCCChhHHHhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~ 573 (813)
+.+++|+|+.||||||+.+.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999975
No 309
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.75 E-value=0.13 Score=55.28 Aligned_cols=116 Identities=13% Similarity=0.098 Sum_probs=57.2
Q ss_pred eeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHh-hc---cchhH-HHHHHHHHHHH
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQY-RG---ISTFM-MEMKETATVIK 627 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~-~~---~s~f~-~e~~~~~~il~ 627 (813)
..++++||.|+||||+.+.++....-.......|+.... ....+...- ..|-.. .+ .+... .+++++..-+.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~--~c~~~~~~~-~~d~~~~~~~~~~~~~~i~~ir~l~~~~~ 101 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCR--GCQLMQAGT-HPDYYTLAPEKGKNTLGVDAVREVTEKLN 101 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSH--HHHHHHHTC-CTTEEEECCCTTCSSBCHHHHHHHHHHTT
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCH--HHHHHhcCC-CCCEEEEeccccCCCCCHHHHHHHHHHHh
Confidence 469999999999999999986543211111122332221 112221111 011000 00 01111 22333222222
Q ss_pred h---CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc-CCCEEEEEcCChH
Q psy5289 628 K---CTENSLVIIDELGRGTSTFDGFGMACSIARELASH-RQPFTLFATHFHE 676 (813)
Q Consensus 628 ~---~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~-~~~~~l~~TH~~e 676 (813)
. ..++.++|+||.-.-+. ..+.++++.+.+- .++.+|++|++.+
T Consensus 102 ~~~~~~~~kvviIdead~l~~-----~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 102 EHARLGGAKVVWVTDAALLTD-----AAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SCCTTSSCEEEEESCGGGBCH-----HHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred hccccCCcEEEEECchhhcCH-----HHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 1 13578999999844332 1235677776552 2456678888753
No 310
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.73 E-value=0.031 Score=54.92 Aligned_cols=23 Identities=26% Similarity=0.094 Sum_probs=20.5
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
..+++|+|+.||||||+.+.++-
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999764
No 311
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.71 E-value=0.027 Score=55.35 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=19.0
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
+++|+|+.||||||+.+.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999864
No 312
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.69 E-value=0.029 Score=54.52 Aligned_cols=22 Identities=27% Similarity=0.138 Sum_probs=19.8
Q ss_pred ceeEEEEccCCCChhHHHhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~ 573 (813)
+.+++|+|+.||||||+.+.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999875
No 313
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.68 E-value=0.026 Score=59.80 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.6
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+.+++|+|+||+|||||++.+..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 45899999999999999999854
No 314
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.66 E-value=0.19 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.4
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
|.+++|+||-|+||||+++.++-
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999753
No 315
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.58 E-value=0.034 Score=60.49 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=29.7
Q ss_pred ccccccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 544 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 544 ~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
|+.+.+..|+.++|+||+|+||||++++|+..+
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 788888999999999999999999999987554
No 316
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.56 E-value=0.33 Score=47.80 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=33.3
Q ss_pred CCCcEEEEeCCCCC--CChhhHHHHHHHHHHHHHhc-CCCEEEEEcCC--hHHHhhcCCCCc
Q psy5289 630 TENSLVIIDELGRG--TSTFDGFGMACSIARELASH-RQPFTLFATHF--HEIALLSRVIPT 686 (813)
Q Consensus 630 ~~~~LlllDEp~~G--td~~d~~~i~~~i~~~l~~~-~~~~~l~~TH~--~el~~~~~~~~~ 686 (813)
.+.+||||||++-. .+..+. ..+++.+.++ .+..+|+++.. .++.+++|.+..
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~----~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTe 176 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPL----EEVISALNARPGHQTVIITGRGCHRDILDLADTVSE 176 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCH----HHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEE
T ss_pred CCCCEEEEeCCCccccCCCCCH----HHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceee
Confidence 56799999999542 111221 2355555553 35678888887 578888875443
No 317
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.53 E-value=0.095 Score=55.38 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.5
Q ss_pred eEEEEccCCCChhHHHhhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~ 575 (813)
.++|+||.|+||||+.+.++..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999998654
No 318
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.51 E-value=0.034 Score=54.92 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=20.7
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
|.+++|+|+.||||||+.+.++-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999864
No 319
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.43 E-value=0.035 Score=54.15 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.0
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+.+++|+||.||||||+.+.++-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999753
No 320
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.41 E-value=0.035 Score=54.64 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.1
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.|.+++|+|+.||||||+.+.++-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999999999854
No 321
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.36 E-value=0.063 Score=57.12 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=19.4
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
..+++.||.|+||||+.+.++.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHH
Confidence 5788889999999999999864
No 322
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.26 E-value=0.037 Score=53.64 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=20.1
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+..++|+||.||||||+.+.++-
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999753
No 323
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.24 E-value=0.038 Score=54.73 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.3
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.|.+++|+|+.||||||+.+.++-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999864
No 324
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.24 E-value=0.12 Score=53.26 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=20.2
Q ss_pred eeEEEEccCCCChhHHHhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.-++|+||.|+|||++.|.++..
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999999999999998654
No 325
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.24 E-value=0.034 Score=53.67 Aligned_cols=22 Identities=23% Similarity=0.083 Sum_probs=19.4
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
-.++|+|++|+|||||++.+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999854
No 326
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.22 E-value=0.046 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=20.1
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+.+++|+|+.||||||+.+.++-
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998753
No 327
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.20 E-value=0.019 Score=56.98 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.9
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
+++|.||+||||||+++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999753
No 328
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.18 E-value=0.037 Score=54.03 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=18.9
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
+++|+|+.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999754
No 329
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.14 E-value=0.038 Score=54.51 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=19.2
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
+++|+|++||||||+.+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999854
No 330
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.11 E-value=0.038 Score=54.40 Aligned_cols=107 Identities=17% Similarity=0.110 Sum_probs=55.7
Q ss_pred CceeEEEEccCCCChhH-HHhhhhhhhhhhhc--cccccCCccchhHHHHHHHhcCCchh--HhhccchhHHHHHHHHHH
Q psy5289 551 EVSFNLVTGPNMGGKST-YIRSIGVSVFLAQI--GCFVPCDSATISVVDQIFTRVGAADS--QYRGISTFMMEMKETATV 625 (813)
Q Consensus 551 ~g~~~~itGpNgsGKST-llr~i~~~~~laq~--g~~vpa~~~~~~~~d~i~~~~~~~d~--~~~~~s~f~~e~~~~~~i 625 (813)
.|++..|+||-|||||| ||+.+.... .++. -.+-|+-..+.+ +.+.+++|..-. .......|...
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~-~~~~kvl~~kp~~D~R~~--~~i~S~~g~~~~A~~~~~~~d~~~~------- 88 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYAKDTRYS--SSFCTHDRNTMEALPACLLRDVAQE------- 88 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEETTCCCGG--GSCCHHHHHHSEEEEESSGGGGHHH-------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEccccCccch--hhhhhccCCcccceecCCHHHHHHh-------
Confidence 47899999999999995 555554332 2221 122244222222 123333331100 01111122111
Q ss_pred HHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHH
Q psy5289 626 IKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA 678 (813)
Q Consensus 626 l~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~ 678 (813)
..+.++|++||.== . .+ + ..+++.+.+ .|..||++.++.++.
T Consensus 89 ---~~~~DvIlIDEaQF-f--k~---~-ve~~~~L~~-~gk~VI~~GL~~DF~ 130 (195)
T 1w4r_A 89 ---ALGVAVIGIDEGQF-F--PD---I-VEFCEAMAN-AGKTVIVAALDGTFQ 130 (195)
T ss_dssp ---HHTCSEEEESSGGG-C--TT---H-HHHHHHHHH-TTCEEEEEEESBCTT
T ss_pred ---ccCCCEEEEEchhh-h--HH---H-HHHHHHHHH-CCCeEEEEecccccc
Confidence 12468999999711 1 11 2 224466766 689999999986653
No 331
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.10 E-value=0.037 Score=53.56 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=18.9
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
.++|+|++|+|||||++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999865
No 332
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.10 E-value=0.043 Score=54.41 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.4
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.|.+++|+|+.||||||+.+.++-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999864
No 333
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.07 E-value=0.041 Score=53.38 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=19.0
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
+++|+||.||||||+.+.++-
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999754
No 334
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.06 E-value=0.26 Score=56.64 Aligned_cols=117 Identities=14% Similarity=0.141 Sum_probs=63.8
Q ss_pred CceeEEEEccCCCChhHHHhhhhh---hhhhh--hccccccCCcc----chhHHHHHHHhcCCchhH--hhccchhHHHH
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV---SVFLA--QIGCFVPCDSA----TISVVDQIFTRVGAADSQ--YRGISTFMMEM 619 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~---~~~la--q~g~~vpa~~~----~~~~~d~i~~~~~~~d~~--~~~~s~f~~e~ 619 (813)
...+++|+|+-|.|||||.+.++- ..+-. ...++|..... ...+...++..++..... ...... ...
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~--~~~ 228 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEH--VTS 228 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTT--CCH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCccccccccccc--ccH
Confidence 357999999999999999998873 11111 12234433221 234455677777654220 111111 111
Q ss_pred HHHHHHHH-h-CCC-CcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHhhc
Q psy5289 620 KETATVIK-K-CTE-NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLS 681 (813)
Q Consensus 620 ~~~~~il~-~-~~~-~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~~~ 681 (813)
.++...+. . ..+ +-||+||-. -+... +.|. .. .|+.||++|-+..++...
T Consensus 229 ~~l~~~l~~~L~~~kr~LlVLDdv---~~~~~---~~~~-----~~-~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 229 VVLKRMICNALIDRPNTLFVFDDV---VQEET---IRWA-----QE-LRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEEE---CCHHH---HHHH-----HH-TTCEEEEEESBGGGGGGC
T ss_pred HHHHHHHHHHHcCCCcEEEEEECC---CCchh---hccc-----cc-CCCEEEEEcCCHHHHHHc
Confidence 22222222 2 344 789999987 33221 1221 11 589999999987766543
No 335
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.04 E-value=0.36 Score=52.21 Aligned_cols=31 Identities=23% Similarity=0.128 Sum_probs=22.7
Q ss_pred ccccccccCCceeEEEEccCCCChhHHHhhhhhh
Q psy5289 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 542 ~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.++++++.. .++|+|++||||||+++.+.+.
T Consensus 27 l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 27 LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp C----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 445666654 6999999999999999998654
No 336
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.99 E-value=0.051 Score=53.55 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=20.8
Q ss_pred CCceeEEEEccCCCChhHHHhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~ 573 (813)
....+++|+|+.||||||+.+.++
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999875
No 337
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.99 E-value=0.085 Score=58.82 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=20.9
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
..+++|+||+|+||||+...++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999888654
No 338
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.95 E-value=0.024 Score=55.56 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.4
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+.+++|+||.||||||+.+.++-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998754
No 339
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.89 E-value=0.19 Score=53.18 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=20.6
Q ss_pred ceeEEEEccCCCChhHHHhhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+.-++|+||.|+|||++.|.++..
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHHHHHh
Confidence 346899999999999999998653
No 340
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.68 E-value=0.2 Score=53.37 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=21.0
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+..+.|+||.|+|||++.|.++.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999864
No 341
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=92.67 E-value=0.078 Score=60.76 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.0
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.--++|.|..|||||++|+.+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999754
No 342
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.62 E-value=0.26 Score=58.96 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.2
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
..-+++.||.|+|||++.|++|.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999864
No 343
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.56 E-value=0.055 Score=55.91 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+.+++|+|+.||||||+.+.++-
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999764
No 344
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.51 E-value=0.06 Score=59.78 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=25.8
Q ss_pred ccccccccCCceeEEEEccCCCChhHHHhhhhh
Q psy5289 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 542 ~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
|....+....+.+++|+|++||||||+.+.++-
T Consensus 248 p~~~~~~~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 248 PESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp STTSCSCCSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCccccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 334445555678999999999999999999753
No 345
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.49 E-value=0.049 Score=51.95 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=19.4
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+++|+|+.||||||+.+.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999754
No 346
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.45 E-value=0.055 Score=52.16 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.2
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+++|+|++||||||++..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988743
No 347
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.41 E-value=0.042 Score=54.02 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=25.7
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhhh
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+.+++++..... .++|+|++|+|||||++.+..
T Consensus 15 ~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 445667766555 478999999999999999753
No 348
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.36 E-value=0.27 Score=49.53 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=22.2
Q ss_pred CCceeEEEEccCCCChhHHHhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
..|.+++|.|+.||||||+.+.++-
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999864
No 349
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.27 E-value=0.09 Score=59.34 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=20.4
Q ss_pred eeEEEEccCCCChhHHHhhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
.-++|+||+|+||||+.+.++...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999987654
No 350
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.25 E-value=0.059 Score=52.35 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=18.9
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
+++|+|+.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 351
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.17 E-value=0.062 Score=53.87 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.2
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+.+++|+||.||||||+.+.++-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999753
No 352
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.14 E-value=0.061 Score=53.52 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=17.9
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
.++|+||.||||||+.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999874
No 353
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.12 E-value=0.062 Score=54.10 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.9
Q ss_pred ceeEEEEccCCCChhHHHhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~ 573 (813)
+.+++|+||.||||||+.+.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999975
No 354
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.11 E-value=0.068 Score=52.25 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.1
Q ss_pred ceeEEEEccCCCChhHHHhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~ 573 (813)
|.+.+|+||.|+||||++-.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 6799999999999999985554
No 355
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.09 E-value=0.059 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=19.3
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+++|+|+.||||||+-+.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999753
No 356
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.05 E-value=0.068 Score=53.49 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.8
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+.+++|+||.||||||+.+.++-
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999754
No 357
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.03 E-value=0.065 Score=50.85 Aligned_cols=21 Identities=24% Similarity=0.052 Sum_probs=18.7
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
.++|+|+.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999754
No 358
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.93 E-value=0.075 Score=52.31 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=20.7
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+.+++|+||.||||||+.+.++-
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998753
No 359
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.90 E-value=0.053 Score=57.12 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=17.4
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+.+++|+||.||||||+.+.++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998754
No 360
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.86 E-value=0.071 Score=51.89 Aligned_cols=32 Identities=16% Similarity=0.083 Sum_probs=19.1
Q ss_pred ccccccccCCceeEEEEccCCCChhHHHhhhhh
Q psy5289 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 542 ~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+++++..... .++|+|++|+|||||++.+..
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 45666665543 579999999999999998753
No 361
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.76 E-value=0.072 Score=53.04 Aligned_cols=20 Identities=25% Similarity=0.081 Sum_probs=17.9
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
.++|+||.||||||+.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999874
No 362
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.69 E-value=0.18 Score=53.10 Aligned_cols=21 Identities=19% Similarity=0.282 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHhhhhhh
Q psy5289 555 NLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 555 ~~itGpNgsGKSTllr~i~~~ 575 (813)
++|+||.|+||||+.+.++-.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 899999999999999998643
No 363
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.66 E-value=0.087 Score=57.87 Aligned_cols=23 Identities=17% Similarity=-0.021 Sum_probs=20.0
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+..++|+||+||||||+++.++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999999853
No 364
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.66 E-value=0.074 Score=53.53 Aligned_cols=21 Identities=33% Similarity=0.283 Sum_probs=18.7
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
+++|+||.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999753
No 365
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.57 E-value=0.085 Score=54.10 Aligned_cols=24 Identities=29% Similarity=0.195 Sum_probs=20.5
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
...+++|+||.||||||+-+.++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998754
No 366
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.53 E-value=0.081 Score=50.35 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.6
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
++++|+|+-||||||+-+.++-
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999753
No 367
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.51 E-value=0.16 Score=56.73 Aligned_cols=30 Identities=13% Similarity=-0.072 Sum_probs=24.5
Q ss_pred cccCCceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 547 FKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 547 l~~~~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
+...+|+..+|.||+|+|||||++.++...
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 334568899999999999999999886543
No 368
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.29 E-value=0.087 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.066 Sum_probs=20.3
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
..+++|||+-||||||+.+.++-
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999754
No 369
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.03 E-value=0.1 Score=54.56 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.6
Q ss_pred CceeEEEEccCCCChhHHHhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~ 573 (813)
...+++|+|+.||||||+.+.++
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999986
No 370
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.00 E-value=0.48 Score=54.77 Aligned_cols=117 Identities=16% Similarity=0.173 Sum_probs=58.0
Q ss_pred CCceeEEEEccCCCChhHHHhhhhhhhh--hhhc--c-ccccCCccc----hhHHHHHHHhcCCchhH-hhccchhHHHH
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGVSVF--LAQI--G-CFVPCDSAT----ISVVDQIFTRVGAADSQ-YRGISTFMMEM 619 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~~~~--laq~--g-~~vpa~~~~----~~~~d~i~~~~~~~d~~-~~~~s~f~~e~ 619 (813)
+...+++|+||-|.||||+.+.++--.- -.+. | .++...... +..+..+...++..... .........-.
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAK 224 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHH
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHH
Confidence 3467999999999999999998753211 1111 1 122222111 11112222333311100 00111111112
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChHHHh
Q psy5289 620 KETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL 679 (813)
Q Consensus 620 ~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~el~~ 679 (813)
..+...+....++-||+||..- +. . .++.+ . .++.+|++|.+.....
T Consensus 225 ~~l~~~l~~~~~~~LLVLDdv~---~~---~-----~l~~l-~-~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 225 DRLRILMLRKHPRSLLILDDVW---DS---W-----VLKAF-D-SQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHHTCTTCEEEEEEEC---CH---H-----HHHTT-C-SSCEEEEEESCGGGGT
T ss_pred HHHHHHHccCCCCeEEEEeCCC---CH---H-----HHHHh-c-CCCeEEEECCCcHHHH
Confidence 2233334333468899999982 21 1 22333 2 5889999998876544
No 371
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.97 E-value=0.099 Score=54.95 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=19.7
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+++|+||+||||||+.+.++-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999764
No 372
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=90.94 E-value=0.22 Score=58.13 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.6
Q ss_pred ceeEEEEccCCCChhHHHhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~ 573 (813)
+.+++|+||.|+||||+++.+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll 185 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLL 185 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHH
Confidence 5789999999999999998764
No 373
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.90 E-value=0.11 Score=52.98 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=20.6
Q ss_pred CceeEEEEccCCCChhHHHhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~ 573 (813)
.+.+++|+||.||||||+.+.++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999975
No 374
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.87 E-value=0.12 Score=51.15 Aligned_cols=30 Identities=23% Similarity=0.050 Sum_probs=22.7
Q ss_pred cccccccCCceeEEEEccCCCChhHHHhhhh
Q psy5289 543 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 543 n~v~l~~~~g~~~~itGpNgsGKSTllr~i~ 573 (813)
...-+.. .|..++|+||.|+||||+...++
T Consensus 26 Ha~~v~~-~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 26 HGVLVDI-YGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp ESEEEEE-TTEEEEEECCCTTTTHHHHHHHH
T ss_pred eEEEEEE-CCEEEEEECCCCCCHHHHHHHHH
Confidence 3444443 36889999999999999987753
No 375
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.84 E-value=0.11 Score=51.93 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.3
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.|.+++|.||.||||||.++.++-
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999999753
No 376
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.68 E-value=0.32 Score=58.23 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=21.7
Q ss_pred CceeEEEEccCCCChhHHHhhhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
.+.-++|+||.|+||||+.+.++...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999987543
No 377
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.60 E-value=0.1 Score=56.82 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=18.9
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
+++|+|+||+|||||++.+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 589999999999999999854
No 378
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.43 E-value=0.11 Score=51.59 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
.++|+||.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999753
No 379
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.43 E-value=0.56 Score=53.12 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=19.9
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
...+++|+|++|+||||++..++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988864
No 380
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.20 E-value=0.23 Score=60.33 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.8
Q ss_pred eeEEEEccCCCChhHHHhhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
..++|+||+|+|||++.|.++...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999987654
No 381
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.13 E-value=0.29 Score=51.77 Aligned_cols=101 Identities=10% Similarity=0.097 Sum_probs=53.8
Q ss_pred ceeEEEEccCCCChhHHHhhhhhhhhhhhccccccCCccchhHHHHHHHhcCCchhHhhccchhHHHHHHHHHHHHh---
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK--- 628 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~--- 628 (813)
...+++.||.|+||||+.+.++-- .+. .+.....+ ..+...+ ...-..+++++..-+..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~-----~~~-~~~~~~d~-------~~l~~~~-----~~~~id~ir~li~~~~~~p~ 79 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEY-----VEK-FPPKASDV-------LEIDPEG-----ENIGIDDIRTIKDFLNYSPE 79 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHH-----HHT-SCCCTTTE-------EEECCSS-----SCBCHHHHHHHHHHHTSCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh-----Cch-hhccCCCE-------EEEcCCc-----CCCCHHHHHHHHHHHhhccc
Confidence 457999999999999999997642 110 00000000 0111110 00111123333222222
Q ss_pred CCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhc-CCCEEEEEcCCh
Q psy5289 629 CTENSLVIIDELGRGTSTFDGFGMACSIARELASH-RQPFTLFATHFH 675 (813)
Q Consensus 629 ~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~-~~~~~l~~TH~~ 675 (813)
..+..++|+||+-+-|.. ...++++.+.+- .++.+|++|++.
T Consensus 80 ~~~~kvviIdead~lt~~-----a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ-----AANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp SSSSEEEEETTGGGBCHH-----HHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred cCCceEEEeccHHHhCHH-----HHHHHHHHHhCCCCCeEEEEEECCh
Confidence 135689999998655432 245677777652 255677888875
No 382
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.11 E-value=0.11 Score=49.55 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.4
Q ss_pred ceeEEEEccCCCChhHHHhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~ 573 (813)
.--++|+|++|+|||||++.+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4568999999999999999974
No 383
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.10 E-value=0.13 Score=52.30 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.3
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.|.+++|.||.||||||+++.++-
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999754
No 384
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.96 E-value=0.12 Score=52.24 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=18.5
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.|.+++|.||.||||||..+.++-
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999998753
No 385
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.96 E-value=0.12 Score=57.82 Aligned_cols=23 Identities=26% Similarity=0.122 Sum_probs=19.9
Q ss_pred eeEEEEccCCCChhHHHhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~ 575 (813)
-.++|+|+||+|||||++.+...
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998543
No 386
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.92 E-value=0.12 Score=53.55 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.3
Q ss_pred eEEEEccCCCChhHHHhhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~ 575 (813)
.++|+|++|+|||||++.+...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998543
No 387
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.81 E-value=0.13 Score=49.45 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.3
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
-.++|+|++|+|||||++.+..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999753
No 388
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.67 E-value=0.15 Score=50.99 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.7
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
|.+++|.|+.||||||.++.++-
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999998753
No 389
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.61 E-value=0.14 Score=49.49 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=19.3
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
-.++|+|+.|+|||||++.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999754
No 390
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.49 E-value=0.15 Score=50.82 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=20.0
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+..++|+|+.||||||+.+.++-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999854
No 391
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.37 E-value=0.17 Score=51.31 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.5
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
|.+++|.|+-||||||+.+.++-
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999853
No 392
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.33 E-value=0.17 Score=53.54 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.6
Q ss_pred ceeEEEEccCCCChhHHHhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~ 573 (813)
+.+++|+||+||||||+.+.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHH
Confidence 4589999999999999998875
No 393
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.18 E-value=0.13 Score=56.00 Aligned_cols=27 Identities=33% Similarity=0.357 Sum_probs=21.5
Q ss_pred eccccccccCCceeEEEEccCCCChhHHHhhhh
Q psy5289 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 541 i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~ 573 (813)
+..++.|. ++|+|++|+|||||++.+.
T Consensus 32 ~~~~~~~~------I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 32 VKKGFEFT------LMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp HHHCCEEC------EEECCCTTSCHHHHHHHHT
T ss_pred ecCCCCEE------EEEEcCCCCCHHHHHHHHh
Confidence 44555554 5999999999999999964
No 394
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.14 E-value=0.17 Score=49.75 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=23.2
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhh
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
..+|.+..|.....--++|+|+.|+|||||++.+..
T Consensus 12 ~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 12 DLGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp -------CGGGSEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cccccccccccccCcEEEEECcCCCCHHHHHHHHhc
Confidence 455666666654445689999999999999998743
No 395
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.13 E-value=0.16 Score=54.49 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.5
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+++|+||.||||||+.+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999999988754
No 396
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.11 E-value=1.3 Score=49.11 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=20.6
Q ss_pred CCceeEEEEccCCCChhHHHhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
....+++++|++|+||||+.-.+|.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999777653
No 397
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.08 E-value=0.17 Score=47.07 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=18.5
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999753
No 398
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=89.03 E-value=0.28 Score=53.38 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=19.1
Q ss_pred eEEEEccCCCChhHHHhhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~ 575 (813)
.++|+|++|+|||||++.+...
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999998543
No 399
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.00 E-value=0.17 Score=47.34 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999753
No 400
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.95 E-value=0.18 Score=53.73 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.5
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+++|+||+||||||+-+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988753
No 401
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.91 E-value=0.2 Score=50.63 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.3
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+..++|+|+.||||||+.+.++-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 402
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.90 E-value=0.2 Score=50.25 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.3
Q ss_pred CCceeEEEEccCCCChhHHHhhhhh
Q psy5289 550 GEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 550 ~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+..+++|+||.||||||.-+.++-
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999988753
No 403
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.86 E-value=0.17 Score=50.33 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.4
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+++|+|+.||||||+.+.++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998753
No 404
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.80 E-value=0.18 Score=46.87 Aligned_cols=21 Identities=24% Similarity=0.097 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++++|+.|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999743
No 405
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.75 E-value=0.2 Score=51.56 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.3
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+.+++|.|+-||||||+.+.++-
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999853
No 406
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.45 E-value=0.21 Score=52.85 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=20.1
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
+.+++|+||+||||||+.+.++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 46899999999999999998853
No 407
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.41 E-value=0.19 Score=46.92 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=18.3
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999998743
No 408
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.40 E-value=0.19 Score=46.68 Aligned_cols=20 Identities=25% Similarity=0.117 Sum_probs=17.9
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999874
No 409
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.39 E-value=0.19 Score=46.99 Aligned_cols=21 Identities=19% Similarity=0.041 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999743
No 410
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=88.33 E-value=0.2 Score=55.00 Aligned_cols=25 Identities=24% Similarity=0.121 Sum_probs=20.9
Q ss_pred CceeEEEEccCCCChhHHHhhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.+..++|+|+||+|||||++.+...
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3557999999999999999998543
No 411
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.26 E-value=0.2 Score=46.84 Aligned_cols=20 Identities=35% Similarity=0.343 Sum_probs=17.8
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 37899999999999999874
No 412
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.25 E-value=0.2 Score=47.52 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=18.0
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999874
No 413
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.24 E-value=0.2 Score=46.61 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=18.5
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999753
No 414
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.23 E-value=0.2 Score=46.98 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999998743
No 415
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.23 E-value=0.2 Score=46.91 Aligned_cols=21 Identities=24% Similarity=0.086 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999743
No 416
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.17 E-value=0.23 Score=49.76 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.4
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.|.+++|.|+.||||||..+.++-
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999754
No 417
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=88.17 E-value=0.34 Score=54.38 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=19.9
Q ss_pred eeeccccccccCCceeEEEEccCCCChhHHHhhhhh
Q psy5289 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 539 ~~i~n~v~l~~~~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.++|....+.. ..++|+|+.|+|||||++.+..
T Consensus 13 ~~~~~~~~m~~---~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 13 GLVPRGSHMGK---PVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp ----------C---CEEEEECSSSSSHHHHHHHHEE
T ss_pred CCCCChhhcCC---CEEEEECCCCCcHHHHHHHHhC
Confidence 45666666653 3799999999999999999853
No 418
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.12 E-value=0.21 Score=46.81 Aligned_cols=20 Identities=25% Similarity=0.150 Sum_probs=18.0
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37899999999999999974
No 419
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.12 E-value=0.21 Score=47.31 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=18.0
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999974
No 420
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.06 E-value=0.25 Score=49.39 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=66.9
Q ss_pred eeccccccc--cCCceeEEEEccCCCChhH-HHhhhhhhhhhhhc--cccccCCccchhHHHHHHHhcCCchhHhhccch
Q psy5289 540 YIPNDVYFK--SGEVSFNLVTGPNMGGKST-YIRSIGVSVFLAQI--GCFVPCDSATISVVDQIFTRVGAADSQYRGIST 614 (813)
Q Consensus 540 ~i~n~v~l~--~~~g~~~~itGpNgsGKST-llr~i~~~~~laq~--g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~ 614 (813)
.+|.+=.+- ...|.+.+||||-|||||| +|+.+--. ..+.. ..+-|+...+-+ ...+.+|+|..-.... ...
T Consensus 14 ~~~~~~~m~~~~~~G~I~vitG~M~sGKTT~Llr~~~r~-~~~g~kvli~kp~~D~R~~-~~~I~Sr~G~~~~a~~-v~~ 90 (219)
T 3e2i_A 14 LVPRGSHMYETYHSGWIECITGSMFSGKSEELIRRLRRG-IYAKQKVVVFKPAIDDRYH-KEKVVSHNGNAIEAIN-ISK 90 (219)
T ss_dssp -------------CCEEEEEEECTTSCHHHHHHHHHHHH-HHTTCCEEEEEEC------------CBTTBCCEEEE-ESS
T ss_pred cccCCceEeeccCCceEEEEECCCCCCHHHHHHHHHHHH-HHcCCceEEEEeccCCcch-hhhHHHhcCCceeeEE-eCC
Confidence 455544442 2568999999999999999 77775221 11111 122343332222 1346677774321110 000
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEEEcCChH-----------HHhhcCC
Q psy5289 615 FMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHE-----------IALLSRV 683 (813)
Q Consensus 615 f~~e~~~~~~il~~~~~~~LlllDEp~~Gtd~~d~~~i~~~i~~~l~~~~~~~~l~~TH~~e-----------l~~~~~~ 683 (813)
. .++.+. ...+.++|++||.== .+. .+.+ .+..+.+ .|..|+++-=+.+ |..+++.
T Consensus 91 ~-~di~~~-----i~~~~dvV~IDEaQF-f~~----~~v~-~l~~la~-~gi~Vi~~GLd~DF~~~~F~~~~~Ll~~Ad~ 157 (219)
T 3e2i_A 91 A-SEIMTH-----DLTNVDVIGIDEVQF-FDD----EIVS-IVEKLSA-DGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQ 157 (219)
T ss_dssp G-GGGGGS-----CCTTCSEEEECCGGG-SCT----HHHH-HHHHHHH-TTCEEEEEEESBCTTSCBCTTHHHHHHHCSE
T ss_pred H-HHHHHH-----HhcCCCEEEEechhc-CCH----HHHH-HHHHHHH-CCCEEEEeecccccccCCCccHHHHHHhcce
Confidence 0 011000 024778999999611 111 2333 3445555 6889988754433 2334444
Q ss_pred CCceEeeEEEEEEECCeEEEEEEeccC
Q psy5289 684 IPTFRNVQVSALEQEDNLVLLYQVKPG 710 (813)
Q Consensus 684 ~~~v~~~~~~~~~~~~~i~~~y~l~~G 710 (813)
+..++ -....-...-+|.+++..|
T Consensus 158 v~kl~---aiC~~CG~~A~~~~R~~~g 181 (219)
T 3e2i_A 158 VTKLQ---AVCAVCGSSSSRTQRLING 181 (219)
T ss_dssp EEEEC---EECTTTCSEECEEEEEETT
T ss_pred EEEee---eEccCCCCcceEEEEEECC
Confidence 33222 1111123456777787776
No 421
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.94 E-value=0.21 Score=48.25 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.2
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
-.++|+|+.|+|||||++.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999999743
No 422
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.88 E-value=0.22 Score=46.46 Aligned_cols=20 Identities=25% Similarity=0.104 Sum_probs=18.0
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999974
No 423
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.86 E-value=0.22 Score=46.70 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=17.5
Q ss_pred EEEEccCCCChhHHHhhhh
Q psy5289 555 NLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 555 ~~itGpNgsGKSTllr~i~ 573 (813)
++|+|+.|+|||||++.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 424
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.82 E-value=0.22 Score=47.19 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=18.1
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999974
No 425
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.81 E-value=0.22 Score=46.92 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=18.1
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 48999999999999999874
No 426
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=87.69 E-value=0.23 Score=46.61 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=18.6
Q ss_pred eeEEEEccCCCChhHHHhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~ 573 (813)
--++|+|+.|+|||||++.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999974
No 427
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.63 E-value=0.27 Score=46.49 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=19.8
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.-.++|+|+.|+|||||++.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35689999999999999999743
No 428
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.58 E-value=0.23 Score=47.62 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=17.5
Q ss_pred EEEEccCCCChhHHHhhhh
Q psy5289 555 NLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 555 ~~itGpNgsGKSTllr~i~ 573 (813)
++|+|+.|+|||||++.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999874
No 429
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.57 E-value=0.23 Score=47.79 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=18.2
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
.++|+|+.|+|||||++.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999874
No 430
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.50 E-value=0.29 Score=47.19 Aligned_cols=21 Identities=29% Similarity=0.161 Sum_probs=18.7
Q ss_pred ceeEEEEccCCCChhHHHhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSI 572 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i 572 (813)
|.-++|+|++|+||||+.-.+
T Consensus 16 G~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHH
Confidence 688999999999999997664
No 431
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=87.30 E-value=0.4 Score=57.43 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=20.7
Q ss_pred eeEEEEccCCCChhHHHhhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~~ 576 (813)
.-++|+||.|+||||+.+.++...
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999987654
No 432
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.14 E-value=0.13 Score=52.93 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.4
Q ss_pred eEEEEccCCCChhHHHhhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~ 575 (813)
-++|+||.|+||||+.+.++..
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3889999999999999998753
No 433
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.10 E-value=0.25 Score=46.70 Aligned_cols=21 Identities=24% Similarity=0.039 Sum_probs=18.6
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998754
No 434
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.03 E-value=0.26 Score=46.55 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=18.0
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999874
No 435
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=86.95 E-value=0.26 Score=47.05 Aligned_cols=20 Identities=25% Similarity=0.157 Sum_probs=18.1
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999975
No 436
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=86.91 E-value=0.27 Score=45.90 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=18.3
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999743
No 437
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.86 E-value=0.97 Score=54.08 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.3
Q ss_pred eEEEEccCCCChhHHHhhhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~~ 576 (813)
.++|+||.|+|||++.|.++...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999987654
No 438
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.84 E-value=0.27 Score=47.46 Aligned_cols=20 Identities=20% Similarity=0.100 Sum_probs=17.7
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999998764
No 439
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=86.79 E-value=0.31 Score=48.42 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.0
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
|.+++|-|+-||||||.++.++-
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999998753
No 440
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.78 E-value=0.32 Score=52.01 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.7
Q ss_pred CceeEEEEccCCCChhHHHhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~ 574 (813)
.+.+++|+||.||||||+-+.++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999988763
No 441
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=86.76 E-value=0.28 Score=47.90 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=18.2
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
.++|+|+.|+|||||++.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999974
No 442
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=86.70 E-value=0.52 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.163 Sum_probs=20.3
Q ss_pred CceeEEEEccCCCChhHHHhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~ 573 (813)
..++.+|.|+-||||||+++.++
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~ 182 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRV 182 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHC
T ss_pred cccEEEEEcCCCCCHHHHHHHHh
Confidence 45789999999999999998865
No 443
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=86.69 E-value=0.28 Score=46.31 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=18.6
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999999753
No 444
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=86.66 E-value=0.28 Score=46.88 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=18.1
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999874
No 445
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.66 E-value=0.3 Score=48.60 Aligned_cols=21 Identities=24% Similarity=0.369 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
+++|+||.||||+|.-+.++-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998753
No 446
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=86.61 E-value=0.28 Score=46.66 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=18.6
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 488999999999999999753
No 447
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=86.60 E-value=0.28 Score=50.96 Aligned_cols=22 Identities=18% Similarity=0.145 Sum_probs=19.4
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
-.++|+|++|+|||||++.+..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3589999999999999999854
No 448
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.60 E-value=0.29 Score=45.60 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=18.0
Q ss_pred EEEEccCCCChhHHHhhhhh
Q psy5289 555 NLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 555 ~~itGpNgsGKSTllr~i~~ 574 (813)
++|+|+.|+|||||++.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999743
No 449
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.56 E-value=0.28 Score=48.44 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=19.1
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
-.++|+|+.|+|||||++.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999754
No 450
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=86.53 E-value=0.28 Score=47.30 Aligned_cols=21 Identities=14% Similarity=0.157 Sum_probs=18.5
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 489999999999999998743
No 451
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=86.51 E-value=0.29 Score=46.90 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=18.5
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999753
No 452
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.50 E-value=0.29 Score=47.05 Aligned_cols=21 Identities=24% Similarity=0.097 Sum_probs=18.6
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 588999999999999999753
No 453
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.45 E-value=0.29 Score=46.96 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998753
No 454
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=86.35 E-value=0.31 Score=48.34 Aligned_cols=23 Identities=17% Similarity=0.034 Sum_probs=19.9
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
...++|+|+.|+||||+++.++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999998754
No 455
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.28 E-value=0.3 Score=46.16 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.5
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999999999753
No 456
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=86.14 E-value=0.31 Score=46.25 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999753
No 457
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=86.03 E-value=0.32 Score=46.39 Aligned_cols=20 Identities=25% Similarity=0.069 Sum_probs=18.2
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999975
No 458
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=85.93 E-value=0.32 Score=47.32 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=18.1
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999974
No 459
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=85.80 E-value=0.31 Score=52.95 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.8
Q ss_pred eeEEEEccCCCChhHHHhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~ 573 (813)
.-++|+|+.||||||++|++-
T Consensus 34 ~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 34 VKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 468999999999999999973
No 460
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=85.79 E-value=0.33 Score=47.18 Aligned_cols=21 Identities=33% Similarity=0.278 Sum_probs=18.3
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
++.|+|+.|||||||-.+++.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHC
T ss_pred CEEEECCCCCcHHHHHHHHHh
Confidence 478999999999999998763
No 461
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.73 E-value=0.34 Score=45.93 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999999999743
No 462
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=85.69 E-value=0.33 Score=47.30 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=18.6
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999743
No 463
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=85.64 E-value=0.34 Score=46.09 Aligned_cols=20 Identities=20% Similarity=0.036 Sum_probs=18.2
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 57899999999999999975
No 464
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=85.64 E-value=0.34 Score=46.59 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=17.6
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999998764
No 465
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=85.62 E-value=0.34 Score=46.73 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.7
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999754
No 466
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=85.55 E-value=0.34 Score=46.06 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=17.9
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999874
No 467
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=85.46 E-value=0.35 Score=46.28 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.2
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
--++|+|+.|+|||||++.+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999753
No 468
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=85.34 E-value=0.35 Score=46.55 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=18.2
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 48999999999999999975
No 469
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.27 E-value=0.36 Score=46.67 Aligned_cols=21 Identities=24% Similarity=0.134 Sum_probs=18.6
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 489999999999999999743
No 470
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=85.24 E-value=0.36 Score=46.70 Aligned_cols=21 Identities=19% Similarity=0.047 Sum_probs=18.6
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 489999999999999999753
No 471
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=85.19 E-value=0.36 Score=47.13 Aligned_cols=20 Identities=30% Similarity=0.237 Sum_probs=18.1
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47899999999999999974
No 472
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=85.19 E-value=0.37 Score=46.42 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.2
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
--++|+|+.|+|||||++.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999754
No 473
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=85.14 E-value=0.37 Score=46.36 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.5
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999743
No 474
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=85.11 E-value=3 Score=51.22 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=20.3
Q ss_pred ceeEEEEccCCCChhHHHhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~ 573 (813)
..+++|+||-|.|||||.+.++
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy 171 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVC 171 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHH
Confidence 4799999999999999999886
No 475
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.07 E-value=0.37 Score=47.37 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 479999999999999998743
No 476
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=85.06 E-value=0.95 Score=54.12 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.2
Q ss_pred eEEEEccCCCChhHHHhhhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGVSV 576 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~~~ 576 (813)
.++|+||.|+|||++.|.++...
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 58999999999999999987543
No 477
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=84.96 E-value=0.42 Score=52.41 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=19.1
Q ss_pred eeEEEEccCCCChhHHHhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~ 573 (813)
.+++|+||.||||||+.+.++
T Consensus 3 ~~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHH
Confidence 578999999999999998875
No 478
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=84.90 E-value=0.38 Score=46.53 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=18.5
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 388999999999999999753
No 479
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=84.81 E-value=0.4 Score=47.61 Aligned_cols=23 Identities=22% Similarity=0.052 Sum_probs=19.7
Q ss_pred ceeEEEEccCCCChhHHHhhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~~ 574 (813)
...++|+|+.|+|||||+..++.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35788999999999999998754
No 480
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.61 E-value=0.4 Score=46.01 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.3
Q ss_pred ceeEEEEccCCCChhHHHhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~ 573 (813)
.--++|+|+.|+|||||++.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3468999999999999999975
No 481
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.55 E-value=0.4 Score=46.22 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.6
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 489999999999999999754
No 482
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=84.54 E-value=0.41 Score=46.20 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 488999999999999998743
No 483
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.31 E-value=0.39 Score=47.63 Aligned_cols=25 Identities=24% Similarity=0.155 Sum_probs=20.6
Q ss_pred CceeEEEEccCCCChhHHHhhhhhh
Q psy5289 551 EVSFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 551 ~g~~~~itGpNgsGKSTllr~i~~~ 575 (813)
+...++|.||.|+||||+..+++-.
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999887543
No 484
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=84.29 E-value=0.42 Score=51.71 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=18.7
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|..||||||++|++.+
T Consensus 11 k~lllG~~~sGKsT~~kq~~~ 31 (354)
T 2xtz_A 11 KLLLLGAGESGKSTIFKQIKL 31 (354)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999999864
No 485
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=84.27 E-value=0.46 Score=46.94 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=17.2
Q ss_pred eeEEEEccCCCChhHHHhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSI 572 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i 572 (813)
-+++|||+.|||||++....
T Consensus 6 mi~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHH
Confidence 47899999999999997654
No 486
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=84.26 E-value=0.43 Score=45.91 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=18.1
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999874
No 487
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=84.23 E-value=0.42 Score=46.56 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=19.2
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
--++|+|+.|+|||||++.+..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3589999999999999999753
No 488
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=84.22 E-value=0.42 Score=46.66 Aligned_cols=21 Identities=24% Similarity=0.146 Sum_probs=18.5
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999743
No 489
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.21 E-value=0.45 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.9
Q ss_pred eeEEEEccCCCChhHHHhhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGVS 575 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~~ 575 (813)
.-++|+||.|+||||+.|.++..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999998653
No 490
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=84.19 E-value=0.4 Score=45.81 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=18.8
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999854
No 491
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=84.02 E-value=0.44 Score=46.01 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=18.6
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 488999999999999999743
No 492
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=84.02 E-value=0.44 Score=45.85 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=18.6
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999743
No 493
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=84.00 E-value=0.44 Score=46.20 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.2
Q ss_pred ceeEEEEccCCCChhHHHhhhh
Q psy5289 552 VSFNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 552 g~~~~itGpNgsGKSTllr~i~ 573 (813)
.--++|+|+.|+|||||++.+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999974
No 494
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=83.97 E-value=0.44 Score=46.25 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=18.1
Q ss_pred eEEEEccCCCChhHHHhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIG 573 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~ 573 (813)
-++|+|+.|+|||||++.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999999875
No 495
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=83.92 E-value=0.45 Score=46.30 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999998743
No 496
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=83.92 E-value=0.45 Score=45.69 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=18.5
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999743
No 497
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=83.76 E-value=0.45 Score=46.82 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=18.8
Q ss_pred eEEEEccCCCChhHHHhhhhh
Q psy5289 554 FNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 554 ~~~itGpNgsGKSTllr~i~~ 574 (813)
-++|+|+.|+|||||++.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999754
No 498
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.72 E-value=0.46 Score=46.02 Aligned_cols=22 Identities=18% Similarity=0.019 Sum_probs=18.9
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
--++|+|+.|+|||||++.+..
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999998743
No 499
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=83.71 E-value=0.45 Score=48.55 Aligned_cols=22 Identities=27% Similarity=0.099 Sum_probs=19.1
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
--++|+|+.|+|||||++.+..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 3589999999999999999743
No 500
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=83.69 E-value=0.47 Score=50.20 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.6
Q ss_pred eeEEEEccCCCChhHHHhhhhh
Q psy5289 553 SFNLVTGPNMGGKSTYIRSIGV 574 (813)
Q Consensus 553 ~~~~itGpNgsGKSTllr~i~~ 574 (813)
-+++|+|+.|+|||||++.+..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999998743
Done!