Your job contains 1 sequence.
>psy5289
HKFYLFFFPQKSKTTIRFFNRVEFYCVHGEDAELIQRKSNVVYLVKTMGQKDKTLETVLV
NKSNLSCFSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIV
QKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSEL
KNARLLPEMCLTTATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHV
LPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTE
ARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEAS
NLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMK
LNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQ
TLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSY
IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFT
RVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAREL
ASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHC
AKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETNNREEEYFKTVQEGEYQMFDFLQQC
LSLSKQKDTNRILHLQETQEPGIEEYQSFDKVH
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5289
(813 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040426-2932 - symbol:msh2 "mutS homolog 2 (... 967 3.7e-162 3
UNIPROTKB|P43246 - symbol:MSH2 "DNA mismatch repair prote... 917 5.4e-157 3
UNIPROTKB|E9PHA6 - symbol:MSH2 "DNA mismatch repair prote... 907 6.1e-156 3
UNIPROTKB|Q3MHE4 - symbol:MSH2 "DNA mismatch repair prote... 903 7.8e-156 3
UNIPROTKB|F1PM37 - symbol:MSH2 "Uncharacterized protein" ... 914 3.3e-155 3
RGD|620786 - symbol:Msh2 "mutS homolog 2 (E. coli)" speci... 912 4.2e-145 2
UNIPROTKB|O13396 - symbol:msh-2 "DNA mismatch repair prot... 710 6.9e-131 4
ASPGD|ASPL0000073909 - symbol:AN10621 species:162425 "Eme... 694 2.0e-129 4
UNIPROTKB|Q5B374 - symbol:AN5006.2 "Putative uncharacteri... 694 3.6e-124 4
UNIPROTKB|Q752H0 - symbol:AFR603C "AFR603Cp" species:2848... 777 1.7e-115 3
UNIPROTKB|F1SQH6 - symbol:LOC100739713 "Uncharacterized p... 910 6.5e-106 2
MGI|MGI:101816 - symbol:Msh2 "mutS homolog 2 (E. coli)" s... 905 8.4e-102 2
UNIPROTKB|F1NFH4 - symbol:MSH2 "Uncharacterized protein" ... 978 1.7e-98 1
UNIPROTKB|F1NV33 - symbol:MSH2 "Uncharacterized protein" ... 978 1.7e-98 1
CGD|CAL0001526 - symbol:MSH2 species:5476 "Candida albica... 641 3.8e-95 2
FB|FBgn0015546 - symbol:spel1 "spellchecker1" species:722... 857 1.6e-92 2
UNIPROTKB|F1SQH4 - symbol:LOC100739713 "Uncharacterized p... 910 2.7e-91 1
POMBASE|SPBC19G7.01c - symbol:msh2 "MutS protein homolog ... 570 7.6e-90 3
TAIR|locus:2095097 - symbol:MSH2 "AT3G18524" species:3702... 815 1.2e-87 2
DICTYBASE|DDB_G0275809 - symbol:msh2 "mutS homolog" speci... 799 2.8e-84 2
SGD|S000005450 - symbol:MSH2 "Protein that forms heterodi... 801 5.1e-83 2
UNIPROTKB|Q7RQK0 - symbol:PY01096 "MutS homolog 2-related... 600 1.0e-79 2
UNIPROTKB|B1N4L6 - symbol:EHI_123830 "DNA mismatch repair... 642 4.1e-73 2
WB|WBGene00003418 - symbol:msh-2 species:6239 "Caenorhabd... 667 1.1e-70 2
UNIPROTKB|Q9TXR4 - symbol:msh-2 "Protein MSH-2" species:6... 667 1.1e-70 2
TIGR_CMR|DET_1219 - symbol:DET_1219 "DNA mismatch repair ... 548 1.0e-64 3
UNIPROTKB|Q7R8N0 - symbol:PY07191 "DNA mismatch repair pr... 636 3.0e-62 1
UNIPROTKB|P61667 - symbol:mutS "DNA mismatch repair prote... 538 1.6e-61 2
TIGR_CMR|GSU_1822 - symbol:GSU_1822 "DNA mismatch repair ... 538 1.6e-61 2
UNIPROTKB|P74926 - symbol:mutS "DNA mismatch repair prote... 594 5.4e-61 2
TIGR_CMR|CHY_1397 - symbol:CHY_1397 "DNA mismatch repair ... 519 1.4e-60 2
UNIPROTKB|A9WFZ9 - symbol:mutS "DNA mismatch repair prote... 514 2.3e-60 3
TIGR_CMR|VC_0535 - symbol:VC_0535 "DNA mismatch repair pr... 617 3.1e-60 1
DICTYBASE|DDB_G0268614 - symbol:msh6 "mutS homolog" speci... 482 5.9e-60 3
UNIPROTKB|Q7S4J6 - symbol:NCU08135 "DNA mismatch repair p... 497 4.5e-59 3
ASPGD|ASPL0000041666 - symbol:mshA species:162425 "Emeric... 478 5.0e-57 3
UNIPROTKB|Q5BCM2 - symbol:AN1708.2 "Protein required for ... 478 5.0e-57 3
UNIPROTKB|Q7NLT8 - symbol:mutS "DNA mismatch repair prote... 514 6.4e-57 3
TIGR_CMR|SO_3431 - symbol:SO_3431 "DNA mismatch repair pr... 509 1.0e-56 2
TIGR_CMR|CBU_1056 - symbol:CBU_1056 "DNA mismatch repair ... 508 7.6e-56 3
DICTYBASE|DDB_G0275999 - symbol:msh1 "mutS homolog" speci... 480 4.0e-55 3
TAIR|locus:1005716529 - symbol:MSH7 "AT3G24495" species:3... 456 5.7e-55 2
UNIPROTKB|P23909 - symbol:mutS species:83333 "Escherichia... 512 6.6e-55 2
UNIPROTKB|Q23K54 - symbol:TTHERM_00194810 "MutS domain II... 505 1.0e-54 4
POMBASE|SPAC8F11.03 - symbol:msh3 "MutS protein homolog 3... 487 1.1e-54 2
TIGR_CMR|BA_3905 - symbol:BA_3905 "DNA mismatch repair pr... 563 2.3e-54 2
UNIPROTKB|F1MLH1 - symbol:MSH3 "Uncharacterized protein" ... 446 3.6e-54 3
TIGR_CMR|SPO_0011 - symbol:SPO_0011 "DNA mismatch repair ... 499 3.7e-54 2
CGD|CAL0006305 - symbol:MSH6 species:5476 "Candida albica... 453 9.9e-54 3
UNIPROTKB|Q5VR41 - symbol:OJ1174_D05.15 "Os01g0180600 pro... 449 1.2e-53 3
TIGR_CMR|NSE_0335 - symbol:NSE_0335 "DNA mismatch repair ... 510 1.3e-53 2
UNIPROTKB|Q8F496 - symbol:mutS "DNA mismatch repair prote... 547 1.3e-53 3
UNIPROTKB|G4NEZ2 - symbol:MGG_00704 "DNA mismatch repair ... 454 2.0e-53 3
UNIPROTKB|Q8A334 - symbol:mutS "DNA mismatch repair prote... 496 2.3e-53 3
POMBASE|SPCC285.16c - symbol:msh6 "MutS protein homolog" ... 456 3.7e-53 3
UNIPROTKB|P20585 - symbol:MSH3 "DNA mismatch repair prote... 453 7.3e-53 3
TIGR_CMR|ECH_0824 - symbol:ECH_0824 "DNA mismatch repair ... 495 1.1e-52 2
UNIPROTKB|P49849 - symbol:mutS "DNA mismatch repair prote... 556 1.3e-52 2
UNIPROTKB|Q89VX1 - symbol:mutS "DNA mismatch repair prote... 481 2.8e-52 4
UNIPROTKB|Q3KKQ0 - symbol:mutS "DNA mismatch repair prote... 501 2.8e-52 2
UNIPROTKB|Q8TTB4 - symbol:mutS "DNA mismatch repair prote... 551 4.6e-52 2
UNIPROTKB|F1P9S9 - symbol:MSH3 "Uncharacterized protein" ... 453 8.1e-52 3
UNIPROTKB|E1BYJ2 - symbol:MSH6 "Uncharacterized protein" ... 464 1.6e-51 3
UNIPROTKB|E1BWV7 - symbol:MSH6 "Uncharacterized protein" ... 464 1.8e-51 3
UNIPROTKB|F1LQM8 - symbol:Msh3 "Protein Msh3" species:101... 449 2.2e-50 3
UNIPROTKB|A6V1G8 - symbol:mutS "DNA mismatch repair prote... 537 3.2e-50 2
ASPGD|ASPL0000012704 - symbol:AN3749 species:162425 "Emer... 464 5.4e-50 2
UNIPROTKB|Q5B6T1 - symbol:msh3 "DNA mismatch repair prote... 464 5.4e-50 2
MGI|MGI:109519 - symbol:Msh3 "mutS homolog 3 (E. coli)" s... 435 6.1e-50 3
DICTYBASE|DDB_G0281683 - symbol:msh3 "mutS homolog" speci... 457 1.0e-49 4
TIGR_CMR|APH_0857 - symbol:APH_0857 "DNA mismatch repair ... 475 1.2e-49 3
UNIPROTKB|F1P6X2 - symbol:MSH4 "Uncharacterized protein" ... 442 2.3e-47 2
RGD|2322311 - symbol:Msh6 "mutS homolog 6 (E. coli)" spec... 434 3.4e-47 3
UNIPROTKB|F5H2F9 - symbol:MSH6 "DNA mismatch repair prote... 432 4.5e-47 3
ZFIN|ZDB-GENE-020905-3 - symbol:msh6 "mutS homolog 6 (E. ... 410 4.8e-47 4
UNIPROTKB|E2RJA9 - symbol:MSH4 "Uncharacterized protein" ... 442 6.4e-47 2
UNIPROTKB|F1PM27 - symbol:MSH6 "Uncharacterized protein" ... 433 1.0e-46 3
UNIPROTKB|B4DF41 - symbol:MSH6 "DNA mismatch repair prote... 432 1.1e-46 3
SGD|S000002504 - symbol:MSH6 "Protein required for mismat... 418 1.3e-46 2
UNIPROTKB|F1P4E2 - symbol:MSH4 "Uncharacterized protein" ... 434 1.4e-46 2
UNIPROTKB|P52701 - symbol:MSH6 "DNA mismatch repair prote... 432 1.9e-46 3
WB|WBGene00003422 - symbol:msh-6 species:6239 "Caenorhabd... 421 4.5e-46 4
UNIPROTKB|Q9N3T8 - symbol:msh-6 "Protein MSH-6" species:6... 421 4.5e-46 4
MGI|MGI:1343961 - symbol:Msh6 "mutS homolog 6 (E. coli)" ... 431 5.1e-46 3
UNIPROTKB|J9P5H1 - symbol:MSH6 "Uncharacterized protein" ... 424 1.2e-45 3
POMBASE|SPAC13F5.01c - symbol:msh1 "mitochondrial MutS pr... 506 1.7e-45 1
SGD|S000000688 - symbol:MSH3 "Mismatch repair protein" sp... 451 2.5e-45 2
UNIPROTKB|Q7RKG5 - symbol:PY02936 "G/T mismatch binding p... 421 4.8e-45 3
MGI|MGI:1860077 - symbol:Msh4 "mutS homolog 4 (E. coli)" ... 424 5.1e-45 2
UNIPROTKB|I3LHZ9 - symbol:LOC100739477 "Uncharacterized p... 427 7.2e-45 3
UNIPROTKB|O66652 - symbol:mutS "DNA mismatch repair prote... 498 9.4e-45 1
UNIPROTKB|I3L5Z8 - symbol:MSH4 "Uncharacterized protein" ... 426 9.4e-45 2
UNIPROTKB|F1S9R2 - symbol:MSH4 "Uncharacterized protein" ... 426 1.1e-44 2
UNIPROTKB|E1B9Q4 - symbol:MSH6 "Uncharacterized protein" ... 426 1.3e-44 3
UNIPROTKB|O15457 - symbol:MSH4 "MutS protein homolog 4" s... 421 2.1e-44 2
UNIPROTKB|Q759V4 - symbol:MSH3 "DNA mismatch repair prote... 428 3.7e-44 2
UNIPROTKB|Q75D87 - symbol:AGOS_ABR137W "ABR137Wp" species... 423 4.5e-44 2
TAIR|locus:2130913 - symbol:MSH4 "AT4G17380" species:3702... 467 6.3e-44 2
UNIPROTKB|E1C1F8 - symbol:MSH3 "Uncharacterized protein" ... 469 7.8e-44 1
CGD|CAL0000288 - symbol:orf19.3608 species:5476 "Candida ... 433 1.2e-43 2
WARNING: Descriptions of 82 database sequences were not reported due to the
limiting value of parameter V = 100.
>ZFIN|ZDB-GENE-040426-2932 [details] [associations]
symbol:msh2 "mutS homolog 2 (E. coli)"
species:7955 "Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA;ISS] [GO:0032302 "MutSbeta complex"
evidence=IEA;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IGI;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0010224 "response to UV-B" evidence=IBA] [GO:0031573 "intra-S
DNA damage checkpoint" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0045190 "isotype switching" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0042771 "intrinsic apoptotic
signaling pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0016446
"somatic hypermutation of immunoglobulin genes" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-040426-2932 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0045190 GO:GO:0010165 GO:GO:0010224
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0031573 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOVERGEN:HBG006399
HSSP:P23909 EMBL:AF412833 IPI:IPI00509799 UniGene:Dr.105564
ProteinModelPortal:Q90XA7 SMR:Q90XA7 STRING:Q90XA7
InParanoid:Q90XA7 ArrayExpress:Q90XA7 Uniprot:Q90XA7
Length = 936
Score = 967 (345.5 bits), Expect = 3.7e-162, Sum P(3) = 3.7e-162
Identities = 190/407 (46%), Positives = 275/407 (67%)
Query: 374 MMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQ-GFAYRITMKLNNSI--DDRYT 430
+ + D + M+ L S AR L L A KT+KLE++ Q G+ +R+T K S+ + ++T
Sbjct: 481 LRENMDRLEKAMQAALSSAARGLGLEATKTVKLESNAQIGYFFRVTCKEEKSLRNNKKFT 540
Query: 431 ILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLA 490
LD + GVRF + +L++ N +Y + EYE Q +IV+E+I I+AGY + L++V+A
Sbjct: 541 TLDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIA 600
Query: 491 QFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSG 550
Q D +VSF++ S AP P++RP + G+G LVL RHP VE Q V++IPNDV F SG
Sbjct: 601 QLDAVVSFAVVSHTAPVPFIRPKILEKGSGRLVLKAARHPCVEAQDEVAFIPNDVTFISG 660
Query: 551 EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYR 610
E F+++TGPNMGGKSTYIR +GV V +AQIGCFVPCD A +SVVD + RVGA DSQ +
Sbjct: 661 EKMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIK 720
Query: 611 GISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLF 670
G+STFM EM ETA +++ +E+SL+IIDELGRGTST+DGFG+A +I+ +A+ + F LF
Sbjct: 721 GVSTFMAEMLETAAILRSASEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFCLF 780
Query: 671 ATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDM 730
ATHFHE+ L++ +PT RN+ V+AL + L +LY+VK G C +S+G+H A++A +P+ +
Sbjct: 781 ATHFHELTALAQQVPTVRNLHVTALTTDSTLTMLYKVKKGVCDQSFGIHVAELASFPKHV 840
Query: 731 LEQARDLMKEYEYSLDTKTPSGDETNNREEEYFKTVQEGEYQMFDFL 777
+ AR+ E E D + G+E + ++ QEGE + FL
Sbjct: 841 IANAREKALELEEFQDISSV-GEEAGPKAKKRCMEKQEGEKIIEAFL 886
Score = 530 (191.6 bits), Expect = 3.7e-162, Sum P(3) = 3.7e-162
Identities = 115/308 (37%), Positives = 180/308 (58%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRN 148
VGV VD +K + E PD+D +SNLEA++VQ PKEC+LPA + K+ ++ R
Sbjct: 161 VGVGYVDSTLRKLGVCEFPDNDQFSNLEALLVQIGPKECVLPAGDSGGDLGKLKQVVQRG 220
Query: 149 KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELM 208
+ +T RKK+EF+ +D++QD+NRL++ E ++ LPEM A CL ++I YLEL+
Sbjct: 221 GILLTDRKKSEFTTKDIVQDLNRLLKARKGETVSSAALPEMEKKIAMSCLEAVIRYLELL 280
Query: 209 NNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQT-YDSLLGILDRCRTPQG 267
+E N F + + D ++Y+ + +A + +L++ QGS T SL G+L++CRTPQG
Sbjct: 281 ADEANFGSFKMTTFDLNQYMRLDNAAVQALNLF--QGSCDDATGTHSLAGLLNKCRTPQG 338
Query: 268 HRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKK 327
RL+ QW+KQPL D + I ER V V ++E R + E LR PD+ +A + R+
Sbjct: 339 QRLVNQWIKQPLIDKNKIEERLDLVETFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRQS 398
Query: 328 AGLKDCYRVYEGVSQLPKLISILES-------LVQNVEASNLNTILSSLQSLKMMDRKDA 380
+ L+DCYRVY+ V QLP ++ LE L+ S LN ++S + M
Sbjct: 399 SNLQDCYRVYQSVGQLPNVVLALERYSGKHQVLLHAAFISPLNDLISDFSKFQEMIETTL 458
Query: 381 VMDKMKEY 388
M++++ +
Sbjct: 459 DMNQVEHH 466
Score = 119 (46.9 bits), Expect = 3.7e-162, Sum P(3) = 3.7e-162
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 1 HKFYLFFFPQKSK--TTIRFFNRVEFYCVHGEDAELIQR---KSNVVYLVKTMGQKDKTL 55
H F F+F K TT+R F+R ++Y VHG+DA + K+N V +K +G ++ L
Sbjct: 17 HGFLNFYFSMSDKPDTTVRVFDRNDYYTVHGKDAIFAAKEVFKTNGV--IKNLGSGNRRL 74
Query: 56 ETVLVNKSNLSCFSHILCVISE 77
E+V+++K N F L ++ +
Sbjct: 75 ESVVLSKMNFESFVRDLLLVRQ 96
>UNIPROTKB|P43246 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0019237 "centromeric DNA binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=ISS;IBA] [GO:0010224
"response to UV-B" evidence=ISS;IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0042771
"intrinsic apoptotic signaling pathway in response to DNA damage by
p53 class mediator" evidence=IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0019901 "protein kinase binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0008022 "protein
C-terminus binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA;IMP] [GO:0032405
"MutLalpha complex binding" evidence=IDA] [GO:0032301 "MutSalpha
complex" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0032302 "MutSbeta complex" evidence=IDA]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032143 "single thymine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA] [GO:0000400
"four-way junction DNA binding" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=ISS] [GO:0008584 "male gonad
development" evidence=ISS] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISS] [GO:0030183 "B cell
differentiation" evidence=ISS] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=ISS;IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0042803 GO:GO:0042771 GO:GO:0042493 GO:GO:0003684
GO:GO:0001701 GO:GO:0043524 GO:GO:0007050 GO:GO:0007283
GO:GO:0006119 GO:GO:0008584 GO:GO:0019237 GO:GO:0014070
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 Orphanet:144
GO:GO:0006301 GO:GO:0031573 MIM:608089 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 EMBL:AC079775 eggNOG:COG0249 SUPFAM:SSF48334
MIM:158320 Orphanet:587 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0051096 EMBL:U03911 EMBL:U04045 EMBL:U41221
EMBL:U41206 EMBL:U41207 EMBL:U41208 EMBL:U41210 EMBL:U41211
EMBL:U41212 EMBL:U41213 EMBL:U41214 EMBL:U41215 EMBL:U41216
EMBL:U41217 EMBL:U41218 EMBL:U41219 EMBL:U41220 EMBL:L47583
EMBL:L47582 EMBL:L47581 EMBL:AY601851 EMBL:AK304496 EMBL:BX649122
EMBL:AC138655 EMBL:BC021566 EMBL:AF066081 IPI:IPI00017303
IPI:IPI01014700 PIR:I64819 RefSeq:NP_000242.1 UniGene:Hs.597656
PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F PDB:3THW PDB:3THX
PDB:3THY PDB:3THZ PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E
PDBsum:2O8F PDBsum:3THW PDBsum:3THX PDBsum:3THY PDBsum:3THZ
ProteinModelPortal:P43246 SMR:P43246 DIP:DIP-35054N IntAct:P43246
MINT:MINT-84789 STRING:P43246 PhosphoSite:P43246 DMDM:1171032
PaxDb:P43246 PeptideAtlas:P43246 PRIDE:P43246 DNASU:4436
Ensembl:ENST00000233146 Ensembl:ENST00000543555 GeneID:4436
KEGG:hsa:4436 UCSC:uc002rvy.1 GeneCards:GC02P047630 HGNC:HGNC:7325
HPA:CAB009572 MIM:120435 MIM:609309 neXtProt:NX_P43246
PharmGKB:PA31133 InParanoid:P43246 PhylomeDB:P43246 ChiTaRS:MSH2
EvolutionaryTrace:P43246 GenomeRNAi:4436 NextBio:17289
ArrayExpress:P43246 Bgee:P43246 CleanEx:HS_MSH2
Genevestigator:P43246 GermOnline:ENSG00000095002 Uniprot:P43246
Length = 934
Score = 917 (327.9 bits), Expect = 5.4e-157, Sum P(3) = 5.4e-157
Identities = 189/478 (39%), Positives = 297/478 (62%)
Query: 341 SQLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMD---KMKEYLESTARRLN 397
S K ++E+ + + N ++ + + ++ + D KM+ L S AR L
Sbjct: 445 SDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLG 504
Query: 398 LVADKTIKLENSPQ-GFAYRITMKLNNSI--DDRYTILDTVRGGVRFQDDRLATANTQYQ 454
L K IKL++S Q G+ +R+T K + + ++ +D + GV+F + +L + N +Y
Sbjct: 505 LDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYT 564
Query: 455 AIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCM 514
+ EYE Q +IV+E++ IS+GY + + L+DVLAQ D +VSF+ S AP PYVRP +
Sbjct: 565 KNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAI 624
Query: 515 KPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 574
G G ++L RH VE+Q +++IPNDVYF+ + F+++TGPNMGGKSTYIR GV
Sbjct: 625 LEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGV 684
Query: 575 SVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSL 634
V +AQIGCFVPC+SA +S+VD I RVGA DSQ +G+STFM EM ETA++++ T++SL
Sbjct: 685 IVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSL 744
Query: 635 VIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSA 694
+IIDELGRGTST+DGFG+A +I+ +A+ F +FATHFHE+ L+ IPT N+ V+A
Sbjct: 745 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTA 804
Query: 695 LEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE-YSLDTKTPSGD 753
L E+ L +LYQVK G C +S+G+H A++A +P+ ++E A+ E E + ++ D
Sbjct: 805 LTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQYIGESQGYD 864
Query: 754 ETNNREEEYFKTVQEGEYQMFDFLQQC--LSLSKQKDTNRILHLQETQEPGIEEYQSF 809
++ + ++GE + +FL + + ++ + N + L++ + I + SF
Sbjct: 865 IMEPAAKKCYLEREQGEKIIQEFLSKVKQMPFTEMSEENITIKLKQLKAEVIAKNNSF 922
Score = 533 (192.7 bits), Expect = 5.4e-157, Sum P(3) = 5.4e-157
Identities = 117/305 (38%), Positives = 178/305 (58%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRN 148
VGV VD +K + E PD+D +SNLEA+++Q PKEC+LP + K+ I+ R
Sbjct: 161 VGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRG 220
Query: 149 KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELM 208
+ +T RKK +FS +D+ QD+NRL++ E N+ +LPEM A L ++I +LEL+
Sbjct: 221 GILITERKKADFSTKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELL 280
Query: 209 NNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQT-YDSLLGILDRCRTPQG 267
+++ N QF + + D+S+Y+ + A + +L++ QGS T SL +L++C+TPQG
Sbjct: 281 SDDSNFGQFELTTFDFSQYMKLDIAAVRALNLF--QGSVEDTTGSQSLAALLNKCKTPQG 338
Query: 268 HRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKK 327
RL+ QW+KQPL D + I ER V V + E R L E LR PD+ LA + R+
Sbjct: 339 QRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQA 398
Query: 328 AGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKE 387
A L+DCYR+Y+G++QLP +I LE + L ++ L L R D K +E
Sbjct: 399 ANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDL----RSD--FSKFQE 452
Query: 388 YLEST 392
+E+T
Sbjct: 453 MIETT 457
Score = 117 (46.2 bits), Expect = 5.4e-157, Sum P(3) = 5.4e-157
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 3 FYLFF--FPQKSKTTIRFFNRVEFYCVHGEDAELIQRKS-NVVYLVKTMGQKD-KTLETV 58
F FF P+K TT+R F+R +FY HGEDA L R+ ++K MG K L++V
Sbjct: 19 FVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSV 78
Query: 59 LVNKSNLSCFSHILCVISE 77
+++K N F L ++ +
Sbjct: 79 VLSKMNFESFVKDLLLVRQ 97
Score = 37 (18.1 bits), Expect = 9.1e-105, Sum P(3) = 9.1e-105
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 165 LMQDVNRLVR----FDDSELKNARLLPEMCLTTATHCLRSLINYLELMNNEDNMNQFSIH 220
L Q +N+L + E K+ +LL + +T T + E++ +M+Q H
Sbjct: 407 LYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVENH 466
>UNIPROTKB|E9PHA6 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 EMBL:AC079775
SUPFAM:SSF48334 GO:GO:0032301 GO:GO:0032302 EMBL:AC138655
HGNC:HGNC:7325 ChiTaRS:MSH2 IPI:IPI00893933
ProteinModelPortal:E9PHA6 SMR:E9PHA6 Ensembl:ENST00000406134
UCSC:uc002rvz.3 ArrayExpress:E9PHA6 Bgee:E9PHA6 Uniprot:E9PHA6
Length = 921
Score = 907 (324.3 bits), Expect = 6.1e-156, Sum P(3) = 6.1e-156
Identities = 179/412 (43%), Positives = 271/412 (65%)
Query: 341 SQLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMD---KMKEYLESTARRLN 397
S K ++E+ + + N ++ + + ++ + D KM+ L S AR L
Sbjct: 445 SDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLG 504
Query: 398 LVADKTIKLENSPQ-GFAYRITMKLNNSI--DDRYTILDTVRGGVRFQDDRLATANTQYQ 454
L K IKL++S Q G+ +R+T K + + ++ +D + GV+F + +L + N +Y
Sbjct: 505 LDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYT 564
Query: 455 AIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCM 514
+ EYE Q +IV+E++ IS+GY + + L+DVLAQ D +VSF+ S AP PYVRP +
Sbjct: 565 KNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAI 624
Query: 515 KPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 574
G G ++L RH VE+Q +++IPNDVYF+ + F+++TGPNMGGKSTYIR GV
Sbjct: 625 LEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGV 684
Query: 575 SVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSL 634
V +AQIGCFVPC+SA +S+VD I RVGA DSQ +G+STFM EM ETA++++ T++SL
Sbjct: 685 IVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSL 744
Query: 635 VIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSA 694
+IIDELGRGTST+DGFG+A +I+ +A+ F +FATHFHE+ L+ IPT N+ V+A
Sbjct: 745 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTA 804
Query: 695 LEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDL---MKEYEY 743
L E+ L +LYQVK G C +S+G+H A++A +P+ ++E A+ ++E++Y
Sbjct: 805 LTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQY 856
Score = 533 (192.7 bits), Expect = 6.1e-156, Sum P(3) = 6.1e-156
Identities = 117/305 (38%), Positives = 178/305 (58%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRN 148
VGV VD +K + E PD+D +SNLEA+++Q PKEC+LP + K+ I+ R
Sbjct: 161 VGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRG 220
Query: 149 KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELM 208
+ +T RKK +FS +D+ QD+NRL++ E N+ +LPEM A L ++I +LEL+
Sbjct: 221 GILITERKKADFSTKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELL 280
Query: 209 NNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQT-YDSLLGILDRCRTPQG 267
+++ N QF + + D+S+Y+ + A + +L++ QGS T SL +L++C+TPQG
Sbjct: 281 SDDSNFGQFELTTFDFSQYMKLDIAAVRALNLF--QGSVEDTTGSQSLAALLNKCKTPQG 338
Query: 268 HRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKK 327
RL+ QW+KQPL D + I ER V V + E R L E LR PD+ LA + R+
Sbjct: 339 QRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQA 398
Query: 328 AGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKE 387
A L+DCYR+Y+G++QLP +I LE + L ++ L L R D K +E
Sbjct: 399 ANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDL----RSD--FSKFQE 452
Query: 388 YLEST 392
+E+T
Sbjct: 453 MIETT 457
Score = 117 (46.2 bits), Expect = 6.1e-156, Sum P(3) = 6.1e-156
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 3 FYLFF--FPQKSKTTIRFFNRVEFYCVHGEDAELIQRKS-NVVYLVKTMGQKD-KTLETV 58
F FF P+K TT+R F+R +FY HGEDA L R+ ++K MG K L++V
Sbjct: 19 FVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSV 78
Query: 59 LVNKSNLSCFSHILCVISE 77
+++K N F L ++ +
Sbjct: 79 VLSKMNFESFVKDLLLVRQ 97
Score = 37 (18.1 bits), Expect = 1.0e-103, Sum P(3) = 1.0e-103
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 165 LMQDVNRLVR----FDDSELKNARLLPEMCLTTATHCLRSLINYLELMNNEDNMNQFSIH 220
L Q +N+L + E K+ +LL + +T T + E++ +M+Q H
Sbjct: 407 LYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVENH 466
>UNIPROTKB|Q3MHE4 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9913
"Bos taurus" [GO:0045190 "isotype switching" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0032301 "MutSalpha complex" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] [GO:0010165 "response to X-ray"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0006302 "double-strand break repair" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0051096 "positive regulation of
helicase activity" evidence=IEA] [GO:0043531 "ADP binding"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0032405 "MutLalpha complex binding"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032181 "dinucleotide repeat insertion binding"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0030183 "B cell differentiation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0006119
"oxidative phosphorylation" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0000287
GO:GO:0003684 GO:GO:0001701 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0006119 GO:GO:0008584 GO:GO:0019237
GO:GO:0003697 GO:GO:0007281 GO:GO:0030183 GO:GO:0006302
GO:GO:0045190 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:BC105268 IPI:IPI00904469
RefSeq:NP_001029756.1 UniGene:Bt.635 ProteinModelPortal:Q3MHE4
SMR:Q3MHE4 STRING:Q3MHE4 PRIDE:Q3MHE4 Ensembl:ENSBTAT00000003556
GeneID:533115 KEGG:bta:533115 CTD:4436 GeneTree:ENSGT00550000074867
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 NextBio:20875918 GO:GO:0032181
GO:GO:0032357 GO:GO:0032142 GO:GO:0032143 GO:GO:0051096
Uniprot:Q3MHE4
Length = 934
Score = 903 (322.9 bits), Expect = 7.8e-156, Sum P(3) = 7.8e-156
Identities = 181/405 (44%), Positives = 264/405 (65%)
Query: 379 DAVMDKMKEYLESTARRLNLVADKTIKLENSPQ-GFAYRITMKLNNSI--DDRYTILDTV 435
D + KM+ L S AR L L K IKL++S Q G+ +R+T K + + ++ +D
Sbjct: 486 DDLEKKMQSTLVSAARDLGLDPGKQIKLDSSTQFGYYFRVTCKEEKVLRNNKNFSTVDIQ 545
Query: 436 RGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVL 495
+ GV+F + +L + N +Y + EYE Q +IV+E++ IS+GY + + L+DVLAQ D +
Sbjct: 546 KNGVKFTNSKLTSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYVEPMQTLNDVLAQLDAV 605
Query: 496 VSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFN 555
VSF+ S AP PYVRP + G G + L RH VE+Q V++IPNDV+F+ + F+
Sbjct: 606 VSFAHVSDAAPVPYVRPVILEKGRGRITLKASRHACVEVQDEVAFIPNDVHFEKDKQMFH 665
Query: 556 LVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTF 615
++TGPNMGGKSTYIR GV V +AQIGCFVPC+ A +S+VD I RVGA DSQ +G+STF
Sbjct: 666 IITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCEWAEVSIVDCILARVGAGDSQLKGVSTF 725
Query: 616 MMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFH 675
M EM ETA++++ T++SL+IIDELGRGTST+DGFG+A +I+ +A+ F +FATHFH
Sbjct: 726 MAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH 785
Query: 676 EIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQAR 735
E+ L+ IPT N+ V+AL E+ L +LYQVK G C +S+G+H A++A +P ++E A+
Sbjct: 786 ELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAK 845
Query: 736 DLMKEYEYSLDTKTPSG-DETNNREEEYFKTVQEGEYQMFDFLQQ 779
E E + P DE + + ++GE + +FL +
Sbjct: 846 QKALELEEFQNIGKPQECDEMEPAAKRCYLEREQGEKIIQEFLSK 890
Score = 535 (193.4 bits), Expect = 7.8e-156, Sum P(3) = 7.8e-156
Identities = 115/305 (37%), Positives = 180/305 (59%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRN 148
VGV VD +K + E PD+D +SNLEA+++Q PKEC++P + K+ ++ R
Sbjct: 161 VGVGYVDSTQRKLGLCEFPDNDQFSNLEALLIQIGPKECVMPGGETAGDMGKLRQVIQRG 220
Query: 149 KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELM 208
+ +T RK+ +FS +D+ QD+NRL++ E N+ +LPEM A L ++I +LEL+
Sbjct: 221 GILITERKRADFSTKDIYQDLNRLLKGKKGEQVNSAVLPEMENQVAVSSLSAVIKFLELL 280
Query: 209 NNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQT-YDSLLGILDRCRTPQG 267
+++ N QF + + D+S+Y+ + A + +L++ QGS + SL +L++C+TPQG
Sbjct: 281 SDDSNFGQFELTTFDFSQYMKLDIAAVRALNLF--QGSVEDTSGSQSLAALLNKCKTPQG 338
Query: 268 HRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKK 327
RL+ QW+KQPL D + I ER V V + E R NL E LR PD+ LA + R+
Sbjct: 339 QRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQNLQEDLLRRFPDLNRLAKKFQRQA 398
Query: 328 AGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKE 387
A L+DCYR+Y+G++QLP +I LE +A L ++ L L R D K +E
Sbjct: 399 ANLQDCYRLYQGINQLPNVIQALEKYEGKHQALFLAVFVTPLIDL----RSD--FSKFQE 452
Query: 388 YLEST 392
+E+T
Sbjct: 453 MIETT 457
Score = 118 (46.6 bits), Expect = 7.8e-156, Sum P(3) = 7.8e-156
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 3 FYLFF--FPQKSKTTIRFFNRVEFYCVHGEDAELIQRKS-NVVYLVKTMGQKD-KTLETV 58
F FF P+K TT+R F+R +FY H EDA L R+ +VK MG KTLE+V
Sbjct: 19 FVRFFQGMPEKPTTTVRLFDRGDFYTAHREDALLAAREVFKTQGVVKYMGPAGAKTLESV 78
Query: 59 LVNKSNLSCFSHILCVISE 77
+++K N F L ++ +
Sbjct: 79 VLSKMNFESFVKDLLLVRQ 97
>UNIPROTKB|F1PM37 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GO:GO:0032301 KO:K08735 OMA:WAISEHI GO:GO:0032302 CTD:4436
GeneTree:ENSGT00550000074867 EMBL:AAEX03007498 EMBL:AAEX03007499
EMBL:AAEX03007500 RefSeq:XP_538482.2 Ensembl:ENSCAFT00000004191
GeneID:494002 KEGG:cfa:494002 Uniprot:F1PM37
Length = 934
Score = 914 (326.8 bits), Expect = 3.3e-155, Sum P(3) = 3.3e-155
Identities = 187/437 (42%), Positives = 279/437 (63%)
Query: 379 DAVMDKMKEYLESTARRLNLVADKTIKLENSPQ-GFAYRITMKLNNSI--DDRYTILDTV 435
D + KM+ L S AR L L K IKL++S Q G+ +R+T K + + ++ +D
Sbjct: 486 DDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQ 545
Query: 436 RGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVL 495
+ GV+F + +L + N +Y + EYE Q +IV+E++ IS+GY + + L+DVLAQ D +
Sbjct: 546 KNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAV 605
Query: 496 VSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFN 555
VSF+ S AP PYVRP + G G + L RH VE+Q V++IPNDV+F+ + F+
Sbjct: 606 VSFAHVSNGAPVPYVRPVILEKGQGRITLKASRHACVEVQDEVAFIPNDVHFEKDKQMFH 665
Query: 556 LVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTF 615
++TGPNMGGKSTYIR GV V +AQIGCFVPC+SA +S+VD I RVGA DSQ +G+STF
Sbjct: 666 IITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTF 725
Query: 616 MMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFH 675
M EM ETA++++ T++SL+IIDELGRGTST+DGFG+A +I+ +A+ F +FATHFH
Sbjct: 726 MAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH 785
Query: 676 EIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQAR 735
E+ L+ IPT N+ V+AL E+ L +LYQVK G C +S+G+H A++A +P ++E A+
Sbjct: 786 ELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAK 845
Query: 736 DLMKEYEYSLDTKTPSG-DETNNREEEYFKTVQEGEYQMFDFLQQC--LSLSKQKDTNRI 792
E E + G DE + + ++GE + +FL + + ++ + N
Sbjct: 846 QKALELEEFQNIGGSQGYDEMEPAAKRCYLEREQGEKIIQEFLSKVKQVPFTEMSEENIT 905
Query: 793 LHLQETQEPGIEEYQSF 809
+ L++ + I + SF
Sbjct: 906 MKLKQLKAEVIAKNNSF 922
Score = 521 (188.5 bits), Expect = 3.3e-155, Sum P(3) = 3.3e-155
Identities = 113/305 (37%), Positives = 178/305 (58%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRN 148
VGV VD +K + E PD+D +SNLEA+++Q PKEC+LP + K+ ++ R
Sbjct: 161 VGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQVIQRG 220
Query: 149 KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELM 208
+ +T RK+ +F +D+ QD+NRL++ E N+ +LPEM A L ++I +LEL+
Sbjct: 221 GILITERKRADFFTKDIYQDLNRLLKGKKGEQVNSAVLPEMENQVAASALSAVIKFLELL 280
Query: 209 NNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQT-YDSLLGILDRCRTPQG 267
+++ N Q+ + + D+S+Y+ + A + +L++ QGS T SL +L++C+TPQG
Sbjct: 281 SDDSNFGQYELTTFDFSQYMKLDIAAVRALNLF--QGSVEDTTGSQSLAALLNKCKTPQG 338
Query: 268 HRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKK 327
RL+ QW+KQPL D + I ER V V + E R +L E LR PD+ LA + R+
Sbjct: 339 QRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQA 398
Query: 328 AGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKE 387
A L+DCYR+Y+G++QLP +I LE + L ++ L L R D K +E
Sbjct: 399 ANLQDCYRLYQGINQLPNVIRALEKYEGKHQGLLLAVFVTPLIDL----RSD--FSKFQE 452
Query: 388 YLEST 392
+E+T
Sbjct: 453 MIETT 457
Score = 115 (45.5 bits), Expect = 3.3e-155, Sum P(3) = 3.3e-155
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 3 FYLFF--FPQKSKTTIRFFNRVEFYCVHGEDAELIQRKS-NVVYLVKTMGQKD-KTLETV 58
F FF P+K TT+R F+R +FY H EDA L R+ ++K +G KTLE+V
Sbjct: 19 FVRFFQAMPEKPTTTVRLFDRGDFYTAHHEDALLAAREVFKTQGVIKYLGPAGTKTLESV 78
Query: 59 LVNKSNLSCFSHILCVISE 77
+++K N F L +I +
Sbjct: 79 VLSKMNFESFVKDLLLIRQ 97
>RGD|620786 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=IEA;ISO] [GO:0000400
"four-way junction DNA binding" evidence=IEA;ISO;IBA] [GO:0000403
"Y-form DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002204 "somatic recombination of
immunoglobulin genes involved in immune response" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO;ISS] [GO:0003684 "damaged
DNA binding" evidence=ISO;IBA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA;ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006119 "oxidative phosphorylation" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=ISO;ISS;IBA] [GO:0006302 "double-strand break repair"
evidence=IEA;ISO;IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0007050 "cell cycle arrest" evidence=IEA;ISO] [GO:0007281 "germ
cell development" evidence=IEA;ISO] [GO:0007283 "spermatogenesis"
evidence=IEP] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IEA;ISO] [GO:0008584 "male gonad development"
evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO;IBA] [GO:0010224 "response to UV-B"
evidence=IEA;ISO;IBA] [GO:0014070 "response to organic cyclic
compound" evidence=IEP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IEA;ISO;IBA] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=IEA;ISO] [GO:0019237
"centromeric DNA binding" evidence=IEA;ISO] [GO:0019724 "B cell
mediated immunity" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding"
evidence=IEA;ISO] [GO:0030183 "B cell differentiation"
evidence=IEA;ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IEA;ISO;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA;ISO;IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032142 "single guanine
insertion binding" evidence=IEA;ISO] [GO:0032143 "single thymine
insertion binding" evidence=IEA;ISO] [GO:0032181 "dinucleotide
repeat insertion binding" evidence=IEA;ISO] [GO:0032301 "MutSalpha
complex" evidence=IEA;ISO;IBA] [GO:0032302 "MutSbeta complex"
evidence=IEA;ISO;IBA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA;ISO] [GO:0032405 "MutLalpha complex binding"
evidence=IEA;ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IBA] [GO:0042803
"protein homodimerization activity" evidence=IEA;ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO]
[GO:0043200 "response to amino acid stimulus" evidence=IEP]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA;ISO] [GO:0043531 "ADP binding" evidence=IEA;ISO]
[GO:0043570 "maintenance of DNA repeat elements"
evidence=IEA;ISO;IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IEA;ISO;IBA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA;ISO] [GO:0051096
"positive regulation of helicase activity" evidence=IEA;ISO]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
RGD:620786 GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 CTD:4436
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:X93591
IPI:IPI00211849 PIR:JC6184 RefSeq:NP_112320.1 UniGene:Rn.3174
ProteinModelPortal:P54275 SMR:P54275 STRING:P54275
PhosphoSite:P54275 PRIDE:P54275 GeneID:81709 KEGG:rno:81709
UCSC:RGD:620786 InParanoid:P54275 NextBio:615336
ArrayExpress:P54275 Genevestigator:P54275
GermOnline:ENSRNOG00000015796 Uniprot:P54275
Length = 933
Score = 912 (326.1 bits), Expect = 4.2e-145, Sum P(2) = 4.2e-145
Identities = 181/405 (44%), Positives = 266/405 (65%)
Query: 379 DAVMDKMKEYLESTARRLNLVADKTIKLENSPQ-GFAYRITMKLNNSI--DDRYTILDTV 435
D + KM+ L S AR L L K IKL++S Q G+ +R+T K + + ++ +D
Sbjct: 486 DGLEKKMQSTLISAARGLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQ 545
Query: 436 RGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVL 495
+ GV+F + L++ N +Y + EYE Q +IV+E++ IS+GY + + ++DVLA D +
Sbjct: 546 KNGVKFTNSELSSLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTVNDVLAHLDAV 605
Query: 496 VSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFN 555
VSF+ S AP PYVRP + G G +++ RH VE+Q V++IPNDV+F+ + F+
Sbjct: 606 VSFAHVSNAAPVPYVRPVILEKGKGRIIVKASRHACVEVQHDVAFIPNDVHFEKDKQMFH 665
Query: 556 LVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTF 615
++TGPNMGGKSTYIR GV V +AQIGCFVPC+SA +S+VD I RVGA DSQ +G+STF
Sbjct: 666 IITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTF 725
Query: 616 MMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFH 675
M EM ETA++++ T++SL+IIDELGRGTST+DGFG+A +I+ +A++ F +FATHFH
Sbjct: 726 MAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATNIGAFCMFATHFH 785
Query: 676 EIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQAR 735
E+ L+ IPT N+ V+AL E+ L +LYQVK G C +S+G+H A++A +P ++E A+
Sbjct: 786 ELTALASQIPTVNNLHVTALTTEETLTMLYQVKTGVCDQSFGIHVAELANFPRHVIECAK 845
Query: 736 DLMKEYEYSLDTKTPSG-DETNNREEEYFKTVQEGEYQMFDFLQQ 779
E E T G DET + ++GE + +FL +
Sbjct: 846 QKALELEEFQSIGTSQGHDETQPAAKRRCLEREQGEKIILEFLSK 890
Score = 527 (190.6 bits), Expect = 4.2e-145, Sum P(2) = 4.2e-145
Identities = 134/376 (35%), Positives = 204/376 (54%)
Query: 30 EDAELIQRKSNVVYLVKTMGQKDKTLETVLVNKS---NLSCFSHILCVISEDKT------ 80
+D L++ VY K + K + L K+ NLS F IL ++ T
Sbjct: 90 KDLLLVRHYRVEVYKNKAGNKASKENDWYLAYKASPGNLSQFEDILFGNNDMATSIGIMG 149
Query: 81 --LETVL-TNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDN 137
L TV VGV VD +K + E PD+D +SNLEA+++Q PKEC+LP +
Sbjct: 150 IKLSTVDGQRQVGVGDVDSTQRKLGLCEFPDNDQFSNLEALLIQIGPKECILPGGETAGD 209
Query: 138 KNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHC 197
K+ ++ R + +T RK+ +FS +D+ QD+NRL++ E N+ +LPEM A
Sbjct: 210 MGKLRQVIQRGGILITERKRIDFSTKDIYQDLNRLLKGRKGEQMNSAVLPEMENQVAVSS 269
Query: 198 LRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQT-YDSLL 256
L ++I +LEL++++ N QF + + D+S+Y+ + A + +L++ QGS T SL
Sbjct: 270 LSAVIKFLELLSDDSNFGQFELATFDFSQYMKLDMAAVRALNLF--QGSVEDTTGSQSLA 327
Query: 257 GILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDM 316
L++C+T QG RL++QW+KQPL D + I ER V V ++E R L E LR PD+
Sbjct: 328 AFLNKCKTAQGQRLVSQWIKQPLMDKNRIEERLNLVEAFVEDSELRRALQEDLLRRFPDL 387
Query: 317 QSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLKMMD 376
LA + R+ A L+DCYR+Y+GV QLP +I LE +A L ++ L L
Sbjct: 388 NRLAKKFQRQAANLQDCYRLYQGVKQLPNVIQALEKYQGRHQALLLAVFVTPLTDL---- 443
Query: 377 RKDAVMDKMKEYLEST 392
R D K +E +E+T
Sbjct: 444 RSD--FSKFQEKIETT 457
Score = 119 (46.9 bits), Expect = 5.2e-102, Sum P(2) = 5.2e-102
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 3 FYLFF--FPQKSKTTIRFFNRVEFYCVHGEDAELIQRKS-NVVYLVKTMGQKD-KTLETV 58
F FF P+K TT+ F+R +FY HGEDA L R+ ++K MG KTL+TV
Sbjct: 19 FVRFFEGMPEKPSTTVGLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKTLQTV 78
Query: 59 LVNKSNLSCFSHILCVI 75
+++K N F L ++
Sbjct: 79 VLSKMNFESFVKDLLLV 95
>UNIPROTKB|O13396 [details] [associations]
symbol:msh-2 "DNA mismatch repair protein msh-2"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:AF030634 EMBL:AABX02000010
RefSeq:XP_959643.1 UniGene:Ncr.25288 ProteinModelPortal:O13396
STRING:O13396 EnsemblFungi:EFNCRT00000003090 GeneID:3875790
KEGG:ncr:NCU02230 OrthoDB:EOG4S7NZ5 GO:GO:0000735 Uniprot:O13396
Length = 937
Score = 710 (255.0 bits), Expect = 6.9e-131, Sum P(4) = 6.9e-131
Identities = 155/358 (43%), Positives = 210/358 (58%)
Query: 343 LPKLISILESLVQNVEASNLNTILSSL--QSLKMMDRK-DAVMDKMKEYLESTARRLNLV 399
L KL ++E+ V N I+ SL+++ +K D + M A L
Sbjct: 437 LVKLQEMVETTVDLDALDNHEFIIKPEFDDSLRIIRKKLDRLRTDMDNEFAEAAEDLGQE 496
Query: 400 ADKTIKLENSP-QGFAYRITMKLNNSI--DDRYTILDTVRGGVRFQDDRLATANTQYQAI 456
+K I LEN G+ R+T I + RY T + GV F L ++ +
Sbjct: 497 REKKIFLENHKVHGWCMRLTRTEAGCIRNNSRYLECSTQKNGVYFTTKTLQALRREFDQL 556
Query: 457 QREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKP 516
+ Y Q S+V EV+G++A Y L +L+ VLA DV+VSF+ S AP YVRP + P
Sbjct: 557 SQNYNRTQSSLVNEVVGVAASYCPVLERLAAVLAHLDVIVSFAHCSVHAPISYVRPKIHP 616
Query: 517 MGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576
GTG VL + RHP +E+Q V++I NDV + SF ++TGPNMGGKSTYIR IGV
Sbjct: 617 RGTGRTVLTEARHPCMEVQDDVTFITNDVTLTREDSSFLIITGPNMGGKSTYIRQIGVIA 676
Query: 577 FLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVI 636
+AQIGCFVPC SA +++ D I RVGA+DSQ +G+STFM EM ETA ++K T SL+I
Sbjct: 677 LMAQIGCFVPCSSAELTIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATAESLII 736
Query: 637 IDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSA 694
IDELGRGTST+DGFG+A +I+ + F LFATHFHE+ L+ P +N+ V+A
Sbjct: 737 IDELGRGTSTYDGFGLAWAISEHIVKEIGCFALFATHFHELTALADQYPNVKNLHVTA 794
Score = 439 (159.6 bits), Expect = 6.9e-131, Sum P(4) = 6.9e-131
Identities = 99/309 (32%), Positives = 174/309 (56%)
Query: 88 TVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKN----KIVT 143
TVGV D ++ + E D+D YSN EA+++Q KEC++ + K+ K+
Sbjct: 150 TVGVCFADASVRELGVSEFLDNDLYSNFEALLIQLGVKECIVTQDKGEKEKDPELAKLRQ 209
Query: 144 ILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLIN 203
I+D V + R EF +D+ QD++RL++ D+ + A LLP+ L A +LI
Sbjct: 210 IIDNCGVAIAERSAGEFGTKDIEQDLSRLLK-DE---RAASLLPQTDLKLAMGSASALIK 265
Query: 204 YLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCR 263
YL ++++ N Q+ ++ D ++++ + +A + +L+++P G+ SL G+L+ C+
Sbjct: 266 YLGILHDPSNFGQYQLYQHDLAQFMKLDAAALKALNLMP--GARDGAKNMSLYGLLNHCK 323
Query: 264 TPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRI 323
TP G RLL+QW+KQPL + + I +R V N+TE R ++ E LR +PD+ L+ R
Sbjct: 324 TPVGSRLLSQWLKQPLMNAEEIEKRQQLVEAFANDTELRQSMQEEHLRSIPDLYRLSKRF 383
Query: 324 GRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMD 383
R KA L+D R Y+ V +LP I LE ++ L+ + ++ K+ + D+++
Sbjct: 384 QRGKATLEDVVRAYQVVIRLPGFIGTLEGVMDEAYRDPLDEVYTN----KLRELSDSLV- 438
Query: 384 KMKEYLEST 392
K++E +E+T
Sbjct: 439 KLQEMVETT 447
Score = 94 (38.1 bits), Expect = 6.9e-131, Sum P(4) = 6.9e-131
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 696 EQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDET 755
+++ + LLY+V+PG C +S+G+H A++ +P+ ++ A+ E L+ T +E
Sbjct: 814 KKKREVTLLYKVEPGICDQSFGIHVAELVRFPDKVVRMAKRKADE----LEDFTSKHEEE 869
Query: 756 NNRE--EEYFKT-VQEGEYQMFDFL 777
N +Y K V+EG + D L
Sbjct: 870 NGGGLGVQYSKQDVEEGSALLKDVL 894
Score = 87 (35.7 bits), Expect = 6.9e-131, Sum P(4) = 6.9e-131
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 1 HKFYLFF--FPQKSKTTIRFFNRVEFYCVHGEDAELIQRKS-NVVYLVKTMGQKDKT 54
H F F+ PQ + IR F+R ++Y HG+DA I R +++ +G+ D T
Sbjct: 13 HGFIRFYKSLPQLGEEAIRIFDRGDWYTAHGDDATFIARTVYKTTSVIRQLGRSDHT 69
Score = 46 (21.3 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 22/107 (20%), Positives = 45/107 (42%)
Query: 400 ADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANT--QYQAIQ 457
A++ K + + FA ++ + + +I D R RFQ + + YQ +
Sbjct: 342 AEEIEKRQQLVEAFANDTELRQSMQEEHLRSIPDLYRLSKRFQRGKATLEDVVRAYQVVI 401
Query: 458 R--EYETHQQSIVEEVIG--ISAGYTQTLNQLSDVLAQFDVLVSFSI 500
R + + +++E + YT L +LSD L + +V ++
Sbjct: 402 RLPGFIGTLEGVMDEAYRDPLDEVYTNKLRELSDSLVKLQEMVETTV 448
>ASPGD|ASPL0000073909 [details] [associations]
symbol:AN10621 species:162425 "Emericella nidulans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000404 "loop DNA
binding" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0000406 "double-strand/single-strand DNA
junction binding" evidence=IEA] [GO:0032138 "single base insertion
or deletion binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006200 GO:GO:0016887 GO:GO:0030466 GO:GO:0006298
EMBL:BN001303 GO:GO:0000228 GO:GO:0000403 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
GO:GO:0032138 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0000735 EnsemblFungi:CADANIAT00005387 Uniprot:C8V8L9
Length = 945
Score = 694 (249.4 bits), Expect = 2.0e-129, Sum P(4) = 2.0e-129
Identities = 153/364 (42%), Positives = 220/364 (60%)
Query: 341 SQLPKLISILESLVQNVEASNLNTILSSL--QSLKMMDRKDAVMDKMKE--YLE--STAR 394
+ L KL ++E+ V N I+ SL+++ +K +D+++ YLE + AR
Sbjct: 441 ASLAKLEEMVETTVDLDALENHEFIIKPEFDDSLRIIRKK---LDQLRHDMYLEHKAVAR 497
Query: 395 RLNLVADKTIKLENSP-QGFAYRITMKLNNSIDDR--YTILDTVRGGVRFQDDRLATANT 451
L+ DK + LEN G+ +R+T I ++ Y T + GV F + +
Sbjct: 498 DLDQEMDKKLFLENHRVYGWCFRLTRNEAGCIRNKKAYQECSTQKNGVYFTTSTMQSLRR 557
Query: 452 QYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVR 511
++ + Y Q +V EV+ ++A Y L QL+ VLA DV+VSF+ AS AP Y +
Sbjct: 558 EHDQLSSNYNRTQTGLVSEVVNVAASYCPVLEQLAGVLAHLDVIVSFAHASVHAPTAYTK 617
Query: 512 PCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRS 571
P + P GTG+ VL + RHP +E+Q +S+I NDV E SF ++TGPNMGGKSTYIR
Sbjct: 618 PKIHPRGTGNTVLKEARHPCMEMQDDISFITNDVSLIRDESSFLIITGPNMGGKSTYIRM 677
Query: 572 IGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTE 631
IGV +AQIGCFVPC A +++ D I RVGA+DSQ +G+STFM EM ET+ ++K T
Sbjct: 678 IGVIALMAQIGCFVPCTEAELTIFDCILARVGASDSQLKGVSTFMAEMLETSNILKSATS 737
Query: 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIP-TFRNV 690
SL+IIDELGRGTST+DGFG+A +I+ + + + F LFATHFHE+ L+ P + +N+
Sbjct: 738 ESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGLFATHFHELTTLADRYPKSVKNL 797
Query: 691 QVSA 694
V A
Sbjct: 798 HVVA 801
Score = 439 (159.6 bits), Expect = 2.0e-129, Sum P(4) = 2.0e-129
Identities = 106/306 (34%), Positives = 169/306 (55%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKN--KIVTILD 146
VGV D ++ + E D+D YSN EA+++Q KECL+ + + KI I D
Sbjct: 159 VGVCFADASVRELGVSEFLDNDVYSNFEALVIQLGVKECLVVQDVNRKDVEVAKIRAICD 218
Query: 147 RNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLE 206
+ ++ R ++F +D+ QD+ RL+R D+ ++A LPE L A +LI YL
Sbjct: 219 NCGIAISERPASDFGVKDIEQDLTRLLR-DE---RSAGTLPETELKLAMGGAAALIRYLG 274
Query: 207 LMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQ 266
+M++ N Q+ ++ D ++Y+ + +A + +L+++P G SL G+L+ C+TP
Sbjct: 275 VMSDATNFGQYQLYQHDLAQYMKLDAAALRALNLMP--GPRDGSKSMSLFGLLNHCKTPV 332
Query: 267 GHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRK 326
G RLLAQW+KQPL DL I +R V V +TE R + E LR +PD+ LA R RK
Sbjct: 333 GSRLLAQWLKQPLMDLAEIEKRQRLVEAFVVSTELRQMMQEEHLRSIPDLYRLAKRFQRK 392
Query: 327 KAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMK 386
+A L+D RVY+ +LP ++ LE NV T L + + K+ + A + K++
Sbjct: 393 QANLEDVVRVYQVAIRLPGFVNSLE----NVMDEEYQTPLETEYTAKLRNHS-ASLAKLE 447
Query: 387 EYLEST 392
E +E+T
Sbjct: 448 EMVETT 453
Score = 116 (45.9 bits), Expect = 2.0e-129, Sum P(4) = 2.0e-129
Identities = 34/152 (22%), Positives = 70/152 (46%)
Query: 650 FGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKP 709
FG+ + EL + + + H +A + + + + LLY+V+P
Sbjct: 773 FGLFATHFHELTTLADRYPKSVKNLHVVAFIGDGTTANEEDEKEKRKTRQKVTLLYRVEP 832
Query: 710 GSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETNNREEEYFKT-VQE 768
G C +S+G+H A++ +PE ++ AR +E E + +G+ + ++Y + V+E
Sbjct: 833 GICDQSFGIHVAELVRFPEKVVNMARQKAEELE-DFTSADSAGNAASATIDKYSQEEVEE 891
Query: 769 GEYQMFDFLQQCLSLSKQKDTNRILHLQETQE 800
G + L + S ++ R L L+E ++
Sbjct: 892 GSALLKALLVKWKSAIEEP--GRELTLEEKRQ 921
Score = 67 (28.6 bits), Expect = 2.0e-129, Sum P(4) = 2.0e-129
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 15 TIRFFNRVEFYCVHGEDAELIQRKS-NVVYLVKTMGQKD 52
TIR F+R ++Y HG++AE I R +++ +G+ +
Sbjct: 32 TIRIFDRGDWYSAHGKEAEFIARTVYKTTSVLRNLGRSE 70
>UNIPROTKB|Q5B374 [details] [associations]
symbol:AN5006.2 "Putative uncharacterized protein"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007720 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624 Pfam:PF05024
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0016021 GO:GO:0005524
GO:GO:0003684 GO:GO:0030466 GO:GO:0006506 EMBL:AACD01000084
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 GO:GO:0017176
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
OrthoDB:EOG4S7NZ5 GO:GO:0000735 RefSeq:XP_662610.1
ProteinModelPortal:Q5B374 STRING:Q5B374 GeneID:2872806
KEGG:ani:AN5006.2 Uniprot:Q5B374
Length = 1644
Score = 694 (249.4 bits), Expect = 3.6e-124, Sum P(4) = 3.6e-124
Identities = 153/364 (42%), Positives = 220/364 (60%)
Query: 341 SQLPKLISILESLVQNVEASNLNTILSSL--QSLKMMDRKDAVMDKMKE--YLE--STAR 394
+ L KL ++E+ V N I+ SL+++ +K +D+++ YLE + AR
Sbjct: 441 ASLAKLEEMVETTVDLDALENHEFIIKPEFDDSLRIIRKK---LDQLRHDMYLEHKAVAR 497
Query: 395 RLNLVADKTIKLENSP-QGFAYRITMKLNNSIDDR--YTILDTVRGGVRFQDDRLATANT 451
L+ DK + LEN G+ +R+T I ++ Y T + GV F + +
Sbjct: 498 DLDQEMDKKLFLENHRVYGWCFRLTRNEAGCIRNKKAYQECSTQKNGVYFTTSTMQSLRR 557
Query: 452 QYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVR 511
++ + Y Q +V EV+ ++A Y L QL+ VLA DV+VSF+ AS AP Y +
Sbjct: 558 EHDQLSSNYNRTQTGLVSEVVNVAASYCPVLEQLAGVLAHLDVIVSFAHASVHAPTAYTK 617
Query: 512 PCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRS 571
P + P GTG+ VL + RHP +E+Q +S+I NDV E SF ++TGPNMGGKSTYIR
Sbjct: 618 PKIHPRGTGNTVLKEARHPCMEMQDDISFITNDVSLIRDESSFLIITGPNMGGKSTYIRM 677
Query: 572 IGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTE 631
IGV +AQIGCFVPC A +++ D I RVGA+DSQ +G+STFM EM ET+ ++K T
Sbjct: 678 IGVIALMAQIGCFVPCTEAELTIFDCILARVGASDSQLKGVSTFMAEMLETSNILKSATS 737
Query: 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIP-TFRNV 690
SL+IIDELGRGTST+DGFG+A +I+ + + + F LFATHFHE+ L+ P + +N+
Sbjct: 738 ESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGLFATHFHELTTLADRYPKSVKNL 797
Query: 691 QVSA 694
V A
Sbjct: 798 HVVA 801
Score = 439 (159.6 bits), Expect = 3.6e-124, Sum P(4) = 3.6e-124
Identities = 106/306 (34%), Positives = 169/306 (55%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKN--KIVTILD 146
VGV D ++ + E D+D YSN EA+++Q KECL+ + + KI I D
Sbjct: 159 VGVCFADASVRELGVSEFLDNDVYSNFEALVIQLGVKECLVVQDVNRKDVEVAKIRAICD 218
Query: 147 RNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLE 206
+ ++ R ++F +D+ QD+ RL+R D+ ++A LPE L A +LI YL
Sbjct: 219 NCGIAISERPASDFGVKDIEQDLTRLLR-DE---RSAGTLPETELKLAMGGAAALIRYLG 274
Query: 207 LMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQ 266
+M++ N Q+ ++ D ++Y+ + +A + +L+++P G SL G+L+ C+TP
Sbjct: 275 VMSDATNFGQYQLYQHDLAQYMKLDAAALRALNLMP--GPRDGSKSMSLFGLLNHCKTPV 332
Query: 267 GHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRK 326
G RLLAQW+KQPL DL I +R V V +TE R + E LR +PD+ LA R RK
Sbjct: 333 GSRLLAQWLKQPLMDLAEIEKRQRLVEAFVVSTELRQMMQEEHLRSIPDLYRLAKRFQRK 392
Query: 327 KAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMK 386
+A L+D RVY+ +LP ++ LE NV T L + + K+ + A + K++
Sbjct: 393 QANLEDVVRVYQVAIRLPGFVNSLE----NVMDEEYQTPLETEYTAKLRNHS-ASLAKLE 447
Query: 387 EYLEST 392
E +E+T
Sbjct: 448 EMVETT 453
Score = 116 (45.9 bits), Expect = 3.6e-124, Sum P(4) = 3.6e-124
Identities = 34/152 (22%), Positives = 70/152 (46%)
Query: 650 FGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKP 709
FG+ + EL + + + H +A + + + + LLY+V+P
Sbjct: 773 FGLFATHFHELTTLADRYPKSVKNLHVVAFIGDGTTANEEDEKEKRKTRQKVTLLYRVEP 832
Query: 710 GSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETNNREEEYFKT-VQE 768
G C +S+G+H A++ +PE ++ AR +E E + +G+ + ++Y + V+E
Sbjct: 833 GICDQSFGIHVAELVRFPEKVVNMARQKAEELE-DFTSADSAGNAASATIDKYSQEEVEE 891
Query: 769 GEYQMFDFLQQCLSLSKQKDTNRILHLQETQE 800
G + L + S ++ R L L+E ++
Sbjct: 892 GSALLKALLVKWKSAIEEP--GRELTLEEKRQ 921
Score = 67 (28.6 bits), Expect = 3.6e-124, Sum P(4) = 3.6e-124
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 15 TIRFFNRVEFYCVHGEDAELIQRKS-NVVYLVKTMGQKD 52
TIR F+R ++Y HG++AE I R +++ +G+ +
Sbjct: 32 TIRIFDRGDWYSAHGKEAEFIARTVYKTTSVLRNLGRSE 70
>UNIPROTKB|Q752H0 [details] [associations]
symbol:AFR603C "AFR603Cp" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000735 "removal of nonhomologous ends"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0006311
"meiotic gene conversion" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
EMBL:AE016819 GenomeReviews:AE016819_GR SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 OrthoDB:EOG4S7NZ5
GO:GO:0000735 RefSeq:NP_986150.1 ProteinModelPortal:Q752H0
STRING:Q752H0 EnsemblFungi:AAS53974 GeneID:4622435
KEGG:ago:AGOS_AFR603C PhylomeDB:Q752H0 Uniprot:Q752H0
Length = 956
Score = 777 (278.6 bits), Expect = 1.7e-115, Sum P(3) = 1.7e-115
Identities = 173/436 (39%), Positives = 264/436 (60%)
Query: 383 DKMKEYLESTARRLNLVADKTIKLENSP-QGFAYRITMKLNNSIDD--RYTILDTVRGGV 439
DK++ T+ L +K +KLEN G+ R+T ++ +Y L TV+ G+
Sbjct: 502 DKIRTIHLDTSDDLGFDPEKKLKLENHHVHGWCMRLTRNDAKALRQHKKYLELSTVKAGI 561
Query: 440 RFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFS 499
F L + + +Q++Y+ Q ++V+E++ I+ Y+ L +LS VLA DVL SF+
Sbjct: 562 YFSTKELKLLSDEIGTLQQDYDRKQSALVKEIVTITLSYSPVLEKLSLVLANLDVLCSFA 621
Query: 500 IASTCAPKPYVRPCMKPMGTGS--LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLV 557
S+ AP PYVRP M M G + L RHP+VE Q V++I NDV ++ F ++
Sbjct: 622 HVSSYAPIPYVRPVMYDMHAGQRKMELLASRHPLVEAQDEVTFISNDVVLEADSSGFAII 681
Query: 558 TGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMM 617
TGPNMGGKSTYIR +GV LAQIGCFVPCD+A I++VD I RVGA DSQ +G+STFM
Sbjct: 682 TGPNMGGKSTYIRQVGVICLLAQIGCFVPCDAAEITIVDAILCRVGAGDSQLKGVSTFMA 741
Query: 618 EMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEI 677
EM ETA++++ T+NSL+IIDELGRGTST+DGFG+A SI+ +A + F LFATHFHE+
Sbjct: 742 EMLETASILRNATKNSLIIIDELGRGTSTYDGFGLAWSISEHIAKNIGCFALFATHFHEL 801
Query: 678 ALLSRVIPTFRNVQVSALEQE-----DNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLE 732
L+ P N+ V A +E D++ LLY+V+PG +S+G+H A++ +P +++
Sbjct: 802 TALADDCPNVTNLHVVAHVEEKSHKSDDITLLYKVEPGISDQSFGIHVAEVVQFPSKIVK 861
Query: 733 QARDLMKEYEYSLDTKTPSGDETNNREEEYFKTVQEGEYQMFDFLQQCLSLSKQKDTNRI 792
A+ E + D K + E + + + + +G + + LQ+ S+ + ++ ++
Sbjct: 862 MAKRKATELD---DIKEET--ECLKKLKCSPEHIAKGSEVLKNLLQEWASILRAENLDQQ 916
Query: 793 LHLQETQEPGIEEYQS 808
L + QE I++ +S
Sbjct: 917 LDDESIQELCIDKLRS 932
Score = 336 (123.3 bits), Expect = 1.7e-115, Sum P(3) = 1.7e-115
Identities = 93/320 (29%), Positives = 165/320 (51%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPA----EYLNDNKNKIVTI 144
+GV+ VD ++ K M +I D++ YSN E+ ++Q KECLLP E + K+ +
Sbjct: 157 LGVSYVDSNSYKIGMLDIVDNEVYSNFESFLIQLGVKECLLPDLRNNESFSAELKKVTGV 216
Query: 145 LDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINY 204
++R +T K +EF+ +D+ D+ +L EL A LP C +LI Y
Sbjct: 217 IERCGCVVTFVKNSEFNNKDVEADLAKLC---GDEL--ATSLPRFSKLALASC-NALIGY 270
Query: 205 LELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQT-----------YD 253
+L+NN N + I S+++ + ++ + +L + PQ ST +
Sbjct: 271 QQLLNNAGNEGSYQIVEYSLSEFMKLDASAVKALSIFPQGPSTQSGMATSGKFGGNGKIT 330
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGL 313
SLL +L++C+T G RLL +W+KQPL D +I +RH V+ LV+ E R L + L +
Sbjct: 331 SLLQLLNKCKTNAGVRLLNEWLKQPLSDKGSIEKRHNLVDYLVDQLELRSILRDDYLPLV 390
Query: 314 PDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISIL-ESLVQNVEASNLNTILSSLQSL 372
PD++ L ++ R L+D +VY+ ++P++ +L E+L E S++ ++
Sbjct: 391 PDVRRLTKKLNRN-GSLEDVLKVYQFAQRIPEINGVLKENLDALSEGSHVKDLVLETWYN 449
Query: 373 KMMDRKDAVMDKMKEYLEST 392
+ + + + K +E +E+T
Sbjct: 450 PLNEHVEP-LHKFQEMVETT 468
Score = 60 (26.2 bits), Expect = 1.7e-115, Sum P(3) = 1.7e-115
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 3 FYLFF--FPQKSKTTIRFFNRVEFYCVHGEDA 32
FY F P K TIR +R E+Y + G+DA
Sbjct: 19 FYRRFASLPPKPSQTIRIVDRGEYYTILGQDA 50
Score = 40 (19.1 bits), Expect = 2.2e-84, Sum P(3) = 2.2e-84
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 225 SKYVHMSSAVMSSL--HVLPQQGSTSAQTYD 253
+KYV MS V++SL L +QG + YD
Sbjct: 81 TKYVTMSPQVIASLLKMALLEQGF-KVEIYD 110
Score = 40 (19.1 bits), Expect = 2.7e-27, Sum P(3) = 2.7e-27
Identities = 21/81 (25%), Positives = 37/81 (45%)
Query: 372 LKMMDRKDAVMDKMKEYLESTARRLNLVADKTIK----LENSPQGFAYRITMK-LNNSID 426
+KM RK +D +KE E ++L + K L+N Q +A + + L+ +D
Sbjct: 860 VKMAKRKATELDDIKEETECL-KKLKCSPEHIAKGSEVLKNLLQEWASILRAENLDQQLD 918
Query: 427 D---RYTILDTVRGGVRFQDD 444
D + +D +R V D+
Sbjct: 919 DESIQELCIDKLRSLVNSSDE 939
>UNIPROTKB|F1SQH6 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074867 EMBL:CU928288 EMBL:FP102206
EMBL:FP476038 Ensembl:ENSSSCT00000009229 OMA:KGACDQS
ArrayExpress:F1SQH6 Uniprot:F1SQH6
Length = 584
Score = 910 (325.4 bits), Expect = 6.5e-106, Sum P(2) = 6.5e-106
Identities = 185/437 (42%), Positives = 279/437 (63%)
Query: 379 DAVMDKMKEYLESTARRLNLVADKTIKLENSPQ-GFAYRITMKLNNSI--DDRYTILDTV 435
D + KM+ L S AR L L K IKL++S Q G+ +R+T K + + ++ +D
Sbjct: 136 DDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQ 195
Query: 436 RGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVL 495
+ GV+F + +L + N +Y + EYE Q +IV+E++ IS+GY + + L+DVLAQ D +
Sbjct: 196 KNGVKFTNSKLTSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYVEPMQTLNDVLAQLDAV 255
Query: 496 VSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFN 555
VSF+ S AP PYVRP + G G + L RH VE+Q V++IPNDV+F+ + F+
Sbjct: 256 VSFAHVSNGAPVPYVRPVILEKGQGRITLKASRHACVEVQDEVAFIPNDVHFEKDKQMFH 315
Query: 556 LVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTF 615
++TGPNMGGKSTYIR GV V +AQIGCFVPC+SA +S+VD I RVGA DSQ +G+STF
Sbjct: 316 IITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTF 375
Query: 616 MMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFH 675
M EM ETA++++ T++SL+IIDELGRGTST+DGFG+A +I+ +A+ F +FATHFH
Sbjct: 376 MAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH 435
Query: 676 EIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQAR 735
E+ L+ IPT N+ V+AL E+ L +LYQVK G C +S+G+H A++A +P ++E A+
Sbjct: 436 ELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAK 495
Query: 736 DLMKEYEYSLDTKTPSG-DETNNREEEYFKTVQEGEYQMFDFLQQC--LSLSKQKDTNRI 792
E E + P DE + + ++GE + +F+ + + ++ + N
Sbjct: 496 QKALELEEFQNIGAPQEHDEMEPAAKRCYLEREQGEKIIQEFVSKVKQVPFTEMSEENIT 555
Query: 793 LHLQETQEPGIEEYQSF 809
+ L++ + + + SF
Sbjct: 556 MKLKQLKAEVMAKNNSF 572
Score = 158 (60.7 bits), Expect = 6.5e-106, Sum P(2) = 6.5e-106
Identities = 40/112 (35%), Positives = 59/112 (52%)
Query: 281 DLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGV 340
D + I ER V V + E R +L E LR PD+ LA + R+ A L+DCYR+Y+G+
Sbjct: 2 DKNRIEERLNLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGI 61
Query: 341 SQLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLEST 392
+QLP +I +E +A L ++ L L R D K +E +E+T
Sbjct: 62 NQLPNVIQAMEKYEGQHQALLLAVFVTPLIDL----RSD--FSKFQEMIETT 107
>MGI|MGI:101816 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IGI] [GO:0002204 "somatic recombination of immunoglobulin
genes involved in immune response" evidence=IGI] [GO:0003677 "DNA
binding" evidence=ISO;IMP] [GO:0003684 "damaged DNA binding"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IC;IDA] [GO:0006119 "oxidative
phosphorylation" evidence=IMP] [GO:0006200 "ATP catabolic process"
evidence=ISO;IMP] [GO:0006281 "DNA repair" evidence=ISO;IMP]
[GO:0006298 "mismatch repair" evidence=IGI;ISO;IDA;IMP] [GO:0006301
"postreplication repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006915 "apoptotic process"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0010165 "response to X-ray" evidence=IMP] [GO:0010224 "response
to UV-B" evidence=IMP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IGI;IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IGI;IMP]
[GO:0016887 "ATPase activity" evidence=IMP] [GO:0019237
"centromeric DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=IMP] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0030183 "B cell differentiation" evidence=IMP] [GO:0030983
"mismatched DNA binding" evidence=IMP] [GO:0031573 "intra-S DNA
damage checkpoint" evidence=IGI] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO;IDA] [GO:0032138 "single base
insertion or deletion binding" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=ISO;IDA] [GO:0032302 "MutSbeta complex"
evidence=ISO;IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043570 "maintenance of DNA
repeat elements" evidence=ISO;IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IMP] [GO:0045910 "negative regulation
of DNA recombination" evidence=ISO;IMP] [GO:0051096 "positive
regulation of helicase activity" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 MGI:MGI:101816
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 EMBL:X81143 EMBL:U21011 EMBL:BC047117
IPI:IPI00118158 PIR:S53608 RefSeq:NP_032654.1 UniGene:Mm.4619
ProteinModelPortal:P43247 SMR:P43247 IntAct:P43247 STRING:P43247
PhosphoSite:P43247 PaxDb:P43247 PRIDE:P43247
Ensembl:ENSMUST00000024967 GeneID:17685 KEGG:mmu:17685
InParanoid:P43247 NextBio:292252 Bgee:P43247 CleanEx:MM_MSH2
Genevestigator:P43247 GermOnline:ENSMUSG00000024151 Uniprot:P43247
Length = 935
Score = 905 (323.6 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
Identities = 204/522 (39%), Positives = 318/522 (60%)
Query: 275 MKQPLKDLDAIVERHAAVNILVNNTEARM-NLHE-YAL-RG---LPDM-QSLAMRIGRKK 327
++Q L++ D ++ R +N L + + NL + Y L +G LP + Q+L GR +
Sbjct: 372 LRQSLQE-D-LLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPSVIQALEKYEGRHQ 429
Query: 328 AGLKDCY--RVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKM 385
A L + + + S K ++E+ + + N ++ + + ++ VMD +
Sbjct: 430 ALLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELRE-VMDGL 488
Query: 386 KEYLEST----ARRLNLVADKTIKLENSPQ-GFAYRITMKLNNSI--DDRYTILDTVRGG 438
++ ++ST AR L L K IKL++S Q G+ +R+T K + + ++ +D + G
Sbjct: 489 EKKMQSTLINAARGLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNG 548
Query: 439 VRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSF 498
V+F + L++ N +Y + EYE Q +IV+E++ IS+GY + + L+DVLA D +VSF
Sbjct: 549 VKFTNSELSSLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAHLDAIVSF 608
Query: 499 SIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVT 558
+ S AP PYVRP + G G ++L RH VE+Q V++IPNDV+F+ + F+++T
Sbjct: 609 AHVSNAAPVPYVRPVILEKGKGRIILKASRHACVEVQDEVAFIPNDVHFEKDKQMFHIIT 668
Query: 559 GPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMME 618
GPNMGGKSTYIR GV V +AQIGCFVPC+SA +S+VD I RVGA DSQ +G+STFM E
Sbjct: 669 GPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAE 728
Query: 619 MKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA 678
M ETA++++ T++SL+IIDELGRGTST+DGFG+A +I+ +A+ F +FATHFHE+
Sbjct: 729 MLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISDYIATKIGAFCMFATHFHELT 788
Query: 679 LLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLM 738
L+ IPT N+ V+AL E+ L +LYQVK G C +S+G+H A++A +P ++ A+
Sbjct: 789 ALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIACAKQKA 848
Query: 739 KEYEYSLDTKTPSG-DETNNREEEYFKTVQEGEYQMFDFLQQ 779
E E + T G DE + ++GE + +FL +
Sbjct: 849 LELEEFQNIGTSLGCDEAEPAAKRRCLEREQGEKIILEFLSK 890
Score = 525 (189.9 bits), Expect = 4.1e-56, Sum P(2) = 4.1e-56
Identities = 114/305 (37%), Positives = 179/305 (58%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRN 148
VGV VD +K + E P++D +SNLEA+++Q PKEC+LP + K+ ++ R
Sbjct: 161 VGVGYVDSTQRKLGLCEFPENDQFSNLEALLIQIGPKECVLPGGETTGDMGKLRQVIQRG 220
Query: 149 KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELM 208
+ +T RK+ +FS +D+ QD+NRL++ E N+ LPEM A L ++I +LEL+
Sbjct: 221 GILITERKRADFSTKDIYQDLNRLLKGKKGEQINSAALPEMENQVAVSSLSAVIKFLELL 280
Query: 209 NNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQT-YDSLLGILDRCRTPQG 267
+++ N QF + + D+S+Y+ + A + +L++ QGS T SL +L++C+T QG
Sbjct: 281 SDDSNFGQFELATFDFSQYMKLDMAAVRALNLF--QGSVEDTTGSQSLAALLNKCKTAQG 338
Query: 268 HRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKK 327
RL+ QW+KQPL D + I ER V V ++E R +L E LR PD+ LA + R+
Sbjct: 339 QRLVNQWIKQPLMDRNRIEERLNLVEAFVEDSELRQSLQEDLLRRFPDLNRLAKKFQRQA 398
Query: 328 AGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKE 387
A L+DCYR+Y+G++QLP +I LE +A L ++ L L R D K +E
Sbjct: 399 ANLQDCYRLYQGINQLPSVIQALEKYEGRHQALLLAVFVTPLIDL----RSD--FSKFQE 452
Query: 388 YLEST 392
+E+T
Sbjct: 453 MIETT 457
Score = 124 (48.7 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 3 FYLFF--FPQKSKTTIRFFNRVEFYCVHGEDAELIQRKS-NVVYLVKTMGQK-DKTLETV 58
F FF P+K TT+R F+R +FY HGEDA L R+ ++K MG KTL++V
Sbjct: 19 FVRFFEGMPEKPSTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGSKTLQSV 78
Query: 59 LVNKSNLSCFSHILCVISE 77
+++K N F L ++ +
Sbjct: 79 VLSKMNFESFVKDLLLVRQ 97
>UNIPROTKB|F1NFH4 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 OMA:WAISEHI GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00601005 Ensembl:ENSGALT00000039639 ArrayExpress:F1NFH4
Uniprot:F1NFH4
Length = 866
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 216/529 (40%), Positives = 325/529 (61%)
Query: 263 RTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMR 322
R P +RL ++ +Q L + A+N L N +A + HE G M LA+
Sbjct: 316 RFPDLNRLAKKFQRQAAT-LQDCYRMYQAINQLPNVVQA-LEKHE----GAHQMLLLAVF 369
Query: 323 IGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSL--QSL-KMMDRKD 379
I L D + S K + ++E+ + + N ++ + +L ++ ++ +
Sbjct: 370 I----TPLNDIH------SDFSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELREKMN 419
Query: 380 AVMDKMKEYLESTARRLNLVADKTIKLENSPQ-GFAYRITMK----LNNSIDDRYTILDT 434
+ + M+ L+S A+ L L A K+IKLE++ Q G +RIT K L N++ +Y I DT
Sbjct: 420 ELEESMQTLLKSAAKELGLEAGKSIKLESNSQFGHHFRITCKEEKVLRNNM--KYKITDT 477
Query: 435 VRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDV 494
+ GV+F + +L+ N +Y + EYE Q +IV+E+I I++GY + + ++DV+AQ D
Sbjct: 478 QKNGVKFTNSKLSAINEEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDA 537
Query: 495 LVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSF 554
+VSF+ S AP PYVRP + G G +VL RHP +E+Q V++IPNDV F+ G+ F
Sbjct: 538 IVSFAHVSNGAPVPYVRPVILEKGQGRIVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMF 597
Query: 555 NLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGIST 614
+++TGPNMGGKSTYIR GV V +AQIGCFVPC+SA I++VD I RVGA DSQ +G+ST
Sbjct: 598 HIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCNSAEITIVDCILARVGAGDSQLKGVST 657
Query: 615 FMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF 674
FM EM ETA++++ +ENSL+IIDELGRGTST+DGFG+A +I+ +AS F +FATHF
Sbjct: 658 FMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHF 717
Query: 675 HEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQA 734
HE+ L+ +PT N+ V+AL +D L +LY+VK G C +S+G+H A++A +P+ ++E A
Sbjct: 718 HELTALADQVPTVNNLHVTALTSDDTLTMLYRVKAGVCDQSFGIHVAELAAFPKHVIESA 777
Query: 735 RDLMKEYEYSLDTKTPSGDETNNREEEYFKTVQEGEYQMFDFLQQCLSL 783
R+ E E D P E + ++ +EGE + DFL Q +L
Sbjct: 778 REKALELEEFQDIGRPKESEGEPAAKRCYREREEGEKIIQDFLSQVKAL 826
Score = 540 (195.1 bits), Expect = 1.4e-49, P = 1.4e-49
Identities = 123/334 (36%), Positives = 190/334 (56%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRN 148
+GV VD +K + E PD+D +SNLEA++VQ PKEC+LP K+ ++ R
Sbjct: 94 IGVGYVDTTLRKLSVCEFPDNDQFSNLEALLVQLGPKECVLPGGDTAGEMGKLRQVVQRG 153
Query: 149 KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELM 208
+ +T RKK +F+ +D++QD+NRL++ E N+ LPEM A L ++I +LEL+
Sbjct: 154 GILITDRKKADFTTKDIVQDLNRLLKSRKGEQMNSAALPEMEKQVAVSSLSAVIKFLELL 213
Query: 209 NNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGH 268
+++ N Q+ + + D S+Y+ + +A + +L++ Q +A SL G+L++CRTPQG
Sbjct: 214 SDDSNFGQYELTTFDLSQYMVLDNAAVQALNLF-QSSVENANNTQSLAGLLNKCRTPQGQ 272
Query: 269 RLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKA 328
RL+ QW+KQPL D + I ER V V +TE R L E LR PD+ LA + R+ A
Sbjct: 273 RLVNQWIKQPLMDKNRIEERLNLVEAFVVDTELRQGLQEDLLRRFPDLNRLAKKFQRQAA 332
Query: 329 GLKDCYRVYEGVSQLPKLISILES-------LVQNVEASNLNTILSSLQSLKMMDRKDAV 381
L+DCYR+Y+ ++QLP ++ LE L+ V + LN I S M
Sbjct: 333 TLQDCYRMYQAINQLPNVVQALEKHEGAHQMLLLAVFITPLNDIHSDFSKFLEMIETTLD 392
Query: 382 MDKMK--EYLESTARRLNL--VADKTIKLENSPQ 411
MDK++ E+L + NL + +K +LE S Q
Sbjct: 393 MDKVENHEFLVKASFDPNLTELREKMNELEESMQ 426
>UNIPROTKB|F1NV33 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00821163 Ensembl:ENSGALT00000014573 ArrayExpress:F1NV33
Uniprot:F1NV33
Length = 861
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 216/529 (40%), Positives = 325/529 (61%)
Query: 263 RTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMR 322
R P +RL ++ +Q L + A+N L N +A + HE G M LA+
Sbjct: 311 RFPDLNRLAKKFQRQAAT-LQDCYRMYQAINQLPNVVQA-LEKHE----GAHQMLLLAVF 364
Query: 323 IGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSL--QSL-KMMDRKD 379
I L D + S K + ++E+ + + N ++ + +L ++ ++ +
Sbjct: 365 I----TPLNDIH------SDFSKFLEMIETTLDMDKVENHEFLVKASFDPNLTELREKMN 414
Query: 380 AVMDKMKEYLESTARRLNLVADKTIKLENSPQ-GFAYRITMK----LNNSIDDRYTILDT 434
+ + M+ L+S A+ L L A K+IKLE++ Q G +RIT K L N++ +Y I DT
Sbjct: 415 ELEESMQTLLKSAAKELGLEAGKSIKLESNSQFGHHFRITCKEEKVLRNNM--KYKITDT 472
Query: 435 VRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDV 494
+ GV+F + +L+ N +Y + EYE Q +IV+E+I I++GY + + ++DV+AQ D
Sbjct: 473 QKNGVKFTNSKLSAINEEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDA 532
Query: 495 LVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSF 554
+VSF+ S AP PYVRP + G G +VL RHP +E+Q V++IPNDV F+ G+ F
Sbjct: 533 IVSFAHVSNGAPVPYVRPVILEKGQGRIVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMF 592
Query: 555 NLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGIST 614
+++TGPNMGGKSTYIR GV V +AQIGCFVPC+SA I++VD I RVGA DSQ +G+ST
Sbjct: 593 HIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCNSAEITIVDCILARVGAGDSQLKGVST 652
Query: 615 FMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF 674
FM EM ETA++++ +ENSL+IIDELGRGTST+DGFG+A +I+ +AS F +FATHF
Sbjct: 653 FMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHF 712
Query: 675 HEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQA 734
HE+ L+ +PT N+ V+AL +D L +LY+VK G C +S+G+H A++A +P+ ++E A
Sbjct: 713 HELTALADQVPTVNNLHVTALTSDDTLTMLYRVKAGVCDQSFGIHVAELAAFPKHVIESA 772
Query: 735 RDLMKEYEYSLDTKTPSGDETNNREEEYFKTVQEGEYQMFDFLQQCLSL 783
R+ E E D P E + ++ +EGE + DFL Q +L
Sbjct: 773 REKALELEEFQDIGRPKESEGEPAAKRCYREREEGEKIIQDFLSQVKAL 821
Score = 540 (195.1 bits), Expect = 1.4e-49, P = 1.4e-49
Identities = 123/334 (36%), Positives = 190/334 (56%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRN 148
+GV VD +K + E PD+D +SNLEA++VQ PKEC+LP K+ ++ R
Sbjct: 89 IGVGYVDTTLRKLSVCEFPDNDQFSNLEALLVQLGPKECVLPGGDTAGEMGKLRQVVQRG 148
Query: 149 KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELM 208
+ +T RKK +F+ +D++QD+NRL++ E N+ LPEM A L ++I +LEL+
Sbjct: 149 GILITDRKKADFTTKDIVQDLNRLLKSRKGEQMNSAALPEMEKQVAVSSLSAVIKFLELL 208
Query: 209 NNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGH 268
+++ N Q+ + + D S+Y+ + +A + +L++ Q +A SL G+L++CRTPQG
Sbjct: 209 SDDSNFGQYELTTFDLSQYMVLDNAAVQALNLF-QSSVENANNTQSLAGLLNKCRTPQGQ 267
Query: 269 RLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKA 328
RL+ QW+KQPL D + I ER V V +TE R L E LR PD+ LA + R+ A
Sbjct: 268 RLVNQWIKQPLMDKNRIEERLNLVEAFVVDTELRQGLQEDLLRRFPDLNRLAKKFQRQAA 327
Query: 329 GLKDCYRVYEGVSQLPKLISILES-------LVQNVEASNLNTILSSLQSLKMMDRKDAV 381
L+DCYR+Y+ ++QLP ++ LE L+ V + LN I S M
Sbjct: 328 TLQDCYRMYQAINQLPNVVQALEKHEGAHQMLLLAVFITPLNDIHSDFSKFLEMIETTLD 387
Query: 382 MDKMK--EYLESTARRLNL--VADKTIKLENSPQ 411
MDK++ E+L + NL + +K +LE S Q
Sbjct: 388 MDKVENHEFLVKASFDPNLTELREKMNELEESMQ 421
>CGD|CAL0001526 [details] [associations]
symbol:MSH2 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0032302 "MutSbeta complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032138 "single base insertion or deletion
binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 CGD:CAL0001526 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AACQ01000086 EMBL:AACQ01000085
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08735 RefSeq:XP_715402.1
RefSeq:XP_715472.1 ProteinModelPortal:Q5A102 STRING:Q5A102
GeneID:3642853 GeneID:3642939 KEGG:cal:CaO19.10605
KEGG:cal:CaO19.3093 Uniprot:Q5A102
Length = 873
Score = 641 (230.7 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
Identities = 144/378 (38%), Positives = 217/378 (57%)
Query: 388 YLESTARRLNL-VADKTIKLE-NSPQGFAYRITMKLNNSI--DDRYTILDTVRGGVRFQD 443
YLE+ LNL A +KLE + G+ R+T + + +Y L TV+ GV F
Sbjct: 464 YLEA-GDDLNLDTASNKLKLEQHQTHGWCMRVTRNDSRVLRGKSQYKELQTVKSGVFFTT 522
Query: 444 DRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIAST 503
+ + +Y EY Q +++E++ ++ Y L LS LA DV+ F A+T
Sbjct: 523 IEMKRLSQEYTKAYDEYNVKQSEVIKEILSLTLTYEPVLQSLSSTLAHLDVITCF--ATT 580
Query: 504 CAPKPYVRPCMKPMGTGSLV-LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNM 562
Y +P + P + + L + RHP++E+Q +++I NDV K + F ++TGPNM
Sbjct: 581 AMLNSYTQPKLFPFESSRKINLIESRHPLLEVQDDINFISNDV--KMDDKHFAIITGPNM 638
Query: 563 GGKSTYIRSIGVSVFLAQIGCFVPC-DSATISVVDQIFTRVGAADSQYRGISTFMMEMKE 621
GGKSTYIR IG +AQ+G F+P D A + + D I +RVGA DSQ +G+STFM+EM E
Sbjct: 639 GGKSTYIRQIGTIALMAQVGSFIPANDGAELPIFDAILSRVGAGDSQLKGLSTFMIEMLE 698
Query: 622 TATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLS 681
T++++ T NSL+IIDELGRGTST+DGFG+A +I+ EL R+ F +FATHFHE++ LS
Sbjct: 699 TSSILATATANSLIIIDELGRGTSTYDGFGLAWAISEELIK-RKCFAVFATHFHELSQLS 757
Query: 682 RVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEY 741
N+ + A + +++ L+Y+V PG S+G+ A+ PE ++ A+ ++E
Sbjct: 758 EKYDGVENLNLMAEQTNEDITLIYKVGPGISNTSFGISVAEKLHMPEKIVNMAKRKVEEL 817
Query: 742 EYSLDTKTPSGDETNNRE 759
K ET RE
Sbjct: 818 SEEPPIKKQCS-ETEVRE 834
Score = 325 (119.5 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
Identities = 90/275 (32%), Positives = 157/275 (57%)
Query: 85 LTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTI 144
L N VGV ++ D+ ++ E D++ YSNLE++++Q KE ++PA DNK K +
Sbjct: 141 LGNKVGVCVI-ADSI-VHLSEFEDNELYSNLESLLIQLGVKEVVIPANV--DNK-KFFQM 195
Query: 145 LDR-NKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELK-NARLLPEMCLTTATHCLRSLI 202
L++ N + ++ K F +++ QD+++L+ ++ EL A+ + + A C +LI
Sbjct: 196 LEKLNDLVVSAAKS--FPKDN-EQDISKLLDTENLELSLAAKGINSLDYALALSCCGALI 252
Query: 203 NYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRC 262
+YL+L+N + F I+ + S ++ + S+ M +L++LP G+ A T S+ + +C
Sbjct: 253 DYLDLLNGDKT---FEINKYNLSTFMKLDSSTMKALNILPN-GTQKAIT--SIFELF-KC 305
Query: 263 RTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMR 322
+T G RLL+QW+KQPL DL I ER V ++++T R+ + E+ L +PD+ L +
Sbjct: 306 KTLGGSRLLSQWLKQPLIDLSLIEERQELVKAMIDDTSLRVEIQEF-LSKVPDINRLLKK 364
Query: 323 IGR--KKAG-----LKDCYRVYEGVSQLPKLISIL 350
IG K++G L + +Y+ VS LP L IL
Sbjct: 365 IGLGVKRSGAENKKLNEVVNLYQLVSLLPNLTEIL 399
Score = 43 (20.2 bits), Expect = 6.4e-25, Sum P(2) = 6.4e-25
Identities = 17/68 (25%), Positives = 27/68 (39%)
Query: 701 LVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETNNREE 760
L + Y KP +K +K E ++ K+Y+ D PS E +N E
Sbjct: 399 LTIDYYAKP---LKKDEQALSKFCELVETTIDLDTSFDKDYKIKPDFD-PSLSEISNNME 454
Query: 761 EYFKTVQE 768
FK + +
Sbjct: 455 SAFKAIND 462
>FB|FBgn0015546 [details] [associations]
symbol:spel1 "spellchecker1" species:7227 "Drosophila
melanogaster" [GO:0006298 "mismatch repair" evidence=ISS;NAS;IMP]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0006301 "postreplication repair" evidence=IBA;NAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0042771 EMBL:AE014134 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GeneTree:ENSGT00550000074867 EMBL:U17893
RefSeq:NP_001014482.1 RefSeq:NP_001246031.1 RefSeq:NP_523565.2
UniGene:Dm.2676 ProteinModelPortal:P43248 SMR:P43248 DIP:DIP-21499N
IntAct:P43248 MINT:MINT-1547583 STRING:P43248 PaxDb:P43248
EnsemblMetazoa:FBtr0080630 EnsemblMetazoa:FBtr0309281 GeneID:34842
KEGG:dme:Dmel_CG4215 UCSC:CG4215-RA CTD:34842 FlyBase:FBgn0015546
InParanoid:P43248 OrthoDB:EOG4S1RP5 PhylomeDB:P43248
GenomeRNAi:34842 NextBio:790493 Bgee:P43248 GermOnline:CG4215
Uniprot:P43248
Length = 917
Score = 857 (306.7 bits), Expect = 1.6e-92, Sum P(2) = 1.6e-92
Identities = 219/583 (37%), Positives = 329/583 (56%)
Query: 168 DVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELMNNEDNMNQFSIHSI--DYS 225
D+NR V D + + ++P+ TH + ++ D+ H + +
Sbjct: 292 DLNRFVHLDSAAVAALNIMPK----PGTHPSMPSYRWQSVLGVLDHCRTPQGHRLMGQWV 347
Query: 226 KYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRC-RTPQGHRLLAQWMKQP--LKDL 282
K S +++ H + Q S T ++L LD R P L + M++ L+DL
Sbjct: 348 KQPLRSRNILNDRHNIVQCLLESPDTMETLS--LDYLKRIPDILMLTKKLMRRKANLQDL 405
Query: 283 DAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQ 342
I + +++ + LHE L + ++ K+ LKD + + V Q
Sbjct: 406 FRIYQ------VILRTPKILKVLHE-----LDNSTIESVICAPFKSFLKDLTGLKQMVEQ 454
Query: 343 LPKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADK 402
+ +I E V+AS ++ L LQ +MM + KM+E ++ LNL
Sbjct: 455 VVDFEAI-ERGEYLVKAS-FDSRLMELQ--QMMTE---LYSKMEELQFKCSQELNLDGKN 507
Query: 403 TIKLENSPQ-GFAYRITMKLNNSI--DDRYTILDTVRGGVRFQDDRLATANTQYQAIQRE 459
+KLE+ + G +RIT+K ++ + + Y I+D ++GGVRF D+L ++ + +
Sbjct: 508 QVKLESVAKLGHHFRITVKDDSVLRKNKNYRIVDVIKGGVRFTSDKLEGYADEFASCRTR 567
Query: 460 YETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGT 519
YE Q SIVEE+I ++ GY L L++ LAQ D LVSF+IA+ AP PYVRP M G
Sbjct: 568 YEEQQLSIVEEIIHVAVGYAAPLTLLNNELAQLDCLVSFAIAARSAPTPYVRPKMLEEGA 627
Query: 520 GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA 579
LVL RHP +ELQ V++I N V FK E + ++TGPNMGGKSTYIRS+G +V +A
Sbjct: 628 RELVLEDVRHPCLELQEHVNFIANSVDFKKEECNMFIITGPNMGGKSTYIRSVGTAVLMA 687
Query: 580 QIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDE 639
IG FVPC ATIS+VD I RVGA+D+ +G+STFM+EM ET+ +I+ T+ SLVIIDE
Sbjct: 688 HIGAFVPCSLATISMVDSILGRVGASDNIIKGLSTFMVEMIETSGIIRTATDKSLVIIDE 747
Query: 640 LGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQED 699
LGRGTST++G G+A SIA LA + FTLFATHFHEI L+ + T +N ++A+ D
Sbjct: 748 LGRGTSTYEGCGIAWSIAEHLAKETKCFTLFATHFHEITKLAETLSTVKNCHMAAVADAD 807
Query: 700 NLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
+ LLYQV+ G KS+G+ A++A +PE +++ A+++ E+E
Sbjct: 808 DFTLLYQVRSGVMEKSFGIQVARLANFPEHVVQNAQEVYNEFE 850
Score = 545 (196.9 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 123/383 (32%), Positives = 220/383 (57%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRN 148
VGVA V+ + KF + E DDD+++ LEA +V PKECLLP+ + + + T+LDRN
Sbjct: 162 VGVASVEQNDCKFQLLEFLDDDFFTELEATVVLLGPKECLLPS--IEGEYSAVKTLLDRN 219
Query: 149 KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELM 208
V +T KK+ + DL+QD+NRL+RF + ++A L E+ L A++ L++ I YL+L+
Sbjct: 220 GVMITMPKKS--GDNDLLQDLNRLLRFAKGQQEDATGLKELQLQLASNALKTAIKYLDLV 277
Query: 209 NNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGS-TSAQTY--DSLLGILDRCRTP 265
N+ N+ + I +D +++VH+ SA +++L+++P+ G+ S +Y S+LG+LD CRTP
Sbjct: 278 NDAGNLGHYEIKQLDLNRFVHLDSAAVAALNIMPKPGTHPSMPSYRWQSVLGVLDHCRTP 337
Query: 266 QGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGR 325
QGHRL+ QW+KQPL+ + + +RH V L+ + + L L+ +PD+ L ++ R
Sbjct: 338 QGHRLMGQWVKQPLRSRNILNDRHNIVQCLLESPDTMETLSLDYLKRIPDILMLTKKLMR 397
Query: 326 KKAGLKDCYRVYEGVSQLPKLISILESL----VQNVEASNLNTILSSLQSLKMMDRKDAV 381
+KA L+D +R+Y+ + + PK++ +L L +++V + + L L LK M +
Sbjct: 398 RKANLQDLFRIYQVILRTPKILKVLHELDNSTIESVICAPFKSFLKDLTGLKQMVEQVVD 457
Query: 382 MDKMK--EYLESTA--RRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRG 437
+ ++ EYL + RL + +L + + ++ + +LN ++ + +
Sbjct: 458 FEAIERGEYLVKASFDSRLMELQQMMTELYSKMEELQFKCSQELNLDGKNQVKLESVAKL 517
Query: 438 GVRFQ----DDRLATANTQYQAI 456
G F+ DD + N Y+ +
Sbjct: 518 GHHFRITVKDDSVLRKNKNYRIV 540
Score = 84 (34.6 bits), Expect = 1.6e-92, Sum P(2) = 1.6e-92
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 10 QKSKTTIRFFNRVEFYCVHG-EDAELIQR---KSNVVYLVKTMGQKDKTLETVLVNKSN 64
+K TT+RFF+ + Y VHG +D EL+ + KS K +TL+ V ++K N
Sbjct: 33 EKPATTVRFFDHTDRYTVHGSDDCELVAKIVYKSTAFIGALLPDDKKETLQFVSMSKGN 91
>UNIPROTKB|F1SQH4 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
SUPFAM:SSF48334 GeneTree:ENSGT00550000074867 EMBL:CU928288
RefSeq:XP_003481267.1 Ensembl:ENSSSCT00000009231 GeneID:100739713
KEGG:ssc:100739713 ArrayExpress:F1SQH4 Uniprot:F1SQH4
Length = 450
Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
Identities = 185/437 (42%), Positives = 279/437 (63%)
Query: 379 DAVMDKMKEYLESTARRLNLVADKTIKLENSPQ-GFAYRITMKLNNSI--DDRYTILDTV 435
D + KM+ L S AR L L K IKL++S Q G+ +R+T K + + ++ +D
Sbjct: 2 DDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQ 61
Query: 436 RGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVL 495
+ GV+F + +L + N +Y + EYE Q +IV+E++ IS+GY + + L+DVLAQ D +
Sbjct: 62 KNGVKFTNSKLTSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYVEPMQTLNDVLAQLDAV 121
Query: 496 VSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFN 555
VSF+ S AP PYVRP + G G + L RH VE+Q V++IPNDV+F+ + F+
Sbjct: 122 VSFAHVSNGAPVPYVRPVILEKGQGRITLKASRHACVEVQDEVAFIPNDVHFEKDKQMFH 181
Query: 556 LVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTF 615
++TGPNMGGKSTYIR GV V +AQIGCFVPC+SA +S+VD I RVGA DSQ +G+STF
Sbjct: 182 IITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTF 241
Query: 616 MMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFH 675
M EM ETA++++ T++SL+IIDELGRGTST+DGFG+A +I+ +A+ F +FATHFH
Sbjct: 242 MAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH 301
Query: 676 EIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQAR 735
E+ L+ IPT N+ V+AL E+ L +LYQVK G C +S+G+H A++A +P ++E A+
Sbjct: 302 ELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAK 361
Query: 736 DLMKEYEYSLDTKTPSG-DETNNREEEYFKTVQEGEYQMFDFLQQC--LSLSKQKDTNRI 792
E E + P DE + + ++GE + +F+ + + ++ + N
Sbjct: 362 QKALELEEFQNIGAPQEHDEMEPAAKRCYLEREQGEKIIQEFVSKVKQVPFTEMSEENIT 421
Query: 793 LHLQETQEPGIEEYQSF 809
+ L++ + + + SF
Sbjct: 422 MKLKQLKAEVMAKNNSF 438
>POMBASE|SPBC19G7.01c [details] [associations]
symbol:msh2 "MutS protein homolog 2" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IGI;IMP] [GO:0007534 "gene
conversion at mating-type locus" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IMP] [GO:0000404
"loop DNA binding" evidence=ISO] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0032138 "single base insertion
or deletion binding" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPBC19G7.01c
GO:GO:0005829 GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0006298 GO:GO:0030983 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032301 HOGENOM:HOG000196498 KO:K08735
GO:GO:0032302 GO:GO:0000406 OrthoDB:EOG4S7NZ5 EMBL:AJ006948
PIR:T43699 RefSeq:XP_001713136.1 ProteinModelPortal:O74773
STRING:O74773 EnsemblFungi:SPBC19G7.01c.1 GeneID:2540695
KEGG:spo:SPBC19G7.01c OMA:HINERLD NextBio:20801818 GO:GO:0007534
Uniprot:O74773
Length = 982
Score = 570 (205.7 bits), Expect = 7.6e-90, Sum P(3) = 7.6e-90
Identities = 122/273 (44%), Positives = 170/273 (62%)
Query: 522 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQI 581
L L Q RHP +E Q V +IPNDV + G ++TGPNMGGKSTYIR +GV +AQI
Sbjct: 684 LYLKQARHPCLEAQDDVKFIPNDVNLEHGSSELLIITGPNMGGKSTYIRQVGVITVMAQI 743
Query: 582 GCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELG 641
GC VPC+ A + ++D I RVGA+DSQ +GISTFM EM ETAT+++ T SL+IIDELG
Sbjct: 744 GCPVPCEVADLDIIDAILARVGASDSQLKGISTFMAEMLETATILRAATPRSLIIIDELG 803
Query: 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL---EQE 698
RGTST DGFG+A +I + + F LFATH+HE+ LS I T +N+ V+A +
Sbjct: 804 RGTSTTDGFGLAWAITEHIVTQIGCFCLFATHYHEMTKLSEEITTVKNLHVTAYVGDSES 863
Query: 699 DNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETNNR 758
++ LLY V G+ +S+G+H AK+A +P ++E A + E E SG + + +
Sbjct: 864 KDVALLYNVCEGASDRSFGIHVAKLAHFPPKIIEMASNKAAELEAE-----DSGAQGDTQ 918
Query: 759 EEEYFKTVQEGEYQMFDFLQQCLSLSKQKDTNR 791
E K+ +EG + D ++Q S K + T +
Sbjct: 919 E---VKSKKEGMAIVRDIMRQWRSNVKPEMTQQ 948
Score = 363 (132.8 bits), Expect = 7.6e-90, Sum P(3) = 7.6e-90
Identities = 114/393 (29%), Positives = 204/393 (51%)
Query: 21 RVEFYCVHGEDA--ELIQRKS-NVVYLVKTMGQKDKTLETVLVNKSNLSCFSHILCVISE 77
RVE + + EL+++ S + +++ + + E+ ++ S++S S +L V +
Sbjct: 94 RVEIWGANSAKTGFELLKQASPGNMQMLEDLLVSENYQESTAISDSSVS--SVLLAVTTR 151
Query: 78 DKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPA---EYL 134
K + + +GVA +D KK + E D D Y+N EA+IVQ KEC++ E
Sbjct: 152 VKQDQRI----IGVAFIDPILKKLGVSEFVDSDAYTNFEALIVQVGAKECIISQSGHEST 207
Query: 135 NDNK---------NKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARL 185
N N N++ I++ +T + +EFS D+ ++++++ DS + +A L
Sbjct: 208 NGNSAVSINTAEINRLRNIIEGCGALVTTIRSSEFSARDVELELSKVL---DSPVTHA-L 263
Query: 186 LPEMCLTTATHCLRSLINYL--ELMNN--EDNMNQFS--IHSIDYS--KYVHMSSAVMSS 237
+PE+ L A +L+ YL L+N ED+ S +H ++ +Y+ + A + S
Sbjct: 264 VPELGLQLAMASCNALLRYLGPALLNPDMEDDRENTSRKLHLYHHNLEQYMRLDIAAVRS 323
Query: 238 LHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVN 297
L++LP + +T SL G+L+ CRT G R L +W+ QPL D +I RH V+ LV
Sbjct: 324 LNLLPPPNGNAHKTM-SLYGLLNHCRTAMGARNLRRWIVQPLLDAKSIERRHDLVSALVE 382
Query: 298 NTEARMNL--HEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQ 355
+ EAR L ++ LR +PD+ L R+ R A L+D R+Y+ LPK++++L+SL
Sbjct: 383 DAEARQLLLDDDHLLRSIPDIPKLCRRLTRGSASLEDVVRIYQMAKALPKIVTVLDSLTS 442
Query: 356 N----VEASNLNTILSSLQSL-KMMDRKDAVMD 383
V+ N + + ++L K+++ + +D
Sbjct: 443 EHKDLVDKVYTNVLNNHCKNLEKLIELVETTID 475
Score = 192 (72.6 bits), Expect = 6.7e-72, Sum P(3) = 6.7e-72
Identities = 66/223 (29%), Positives = 105/223 (47%)
Query: 303 MNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGV-----SQLPKLISILESLVQNV 357
+ +++ A + LP + ++ + + L D +VY V L KLI ++E+ + ++
Sbjct: 421 VRIYQMA-KALPKIVTVLDSLTSEHKDLVD--KVYTNVLNNHCKNLEKLIELVETTI-DL 476
Query: 358 EA--SNLNTILSSLQS--LKMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSP-QG 412
EA S+ I + L + R D + + E + L+ +K + LE G
Sbjct: 477 EALDSHQYIIRAEFDEELLDLRQRLDELQHSIFEEHKRVGSDLHQDTEKKLHLEQHHLYG 536
Query: 413 FAYRITMKLNNSIDDR---YTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVE 469
+ R+T + R YT L T + GV F RL + N Y Q+ Y HQ +
Sbjct: 537 WCLRLTRTEAGCLRGRSSHYTELSTQKNGVYFTTKRLHSLNNSYMDHQKSYRYHQNGLAR 596
Query: 470 EVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRP 512
EVI I+A Y L + V+A DV++SF+ AST A PYVRP
Sbjct: 597 EVIKIAATYGPPLEAIGQVIAHLDVILSFAHASTVAVIPYVRP 639
Score = 64 (27.6 bits), Expect = 7.6e-90, Sum P(3) = 7.6e-90
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 11 KSKTTIRFFNRVEFYCVHGEDAELIQRKS 39
K T+R F+R EFY GEDA + + +
Sbjct: 27 KDTNTVRVFDRGEFYVAIGEDASFVAQNA 55
Score = 42 (19.8 bits), Expect = 3.4e-56, Sum P(3) = 3.4e-56
Identities = 30/141 (21%), Positives = 59/141 (41%)
Query: 289 HAAVNILVNNTEARMNLHEY-ALRGLPD-MQSLAMRIGRKKAGLKDCYRVYEGVSQLPKL 346
H + N N+ +N E LR + + +L I + +D V P
Sbjct: 204 HESTN---GNSAVSINTAEINRLRNIIEGCGALVTTIRSSEFSARDVELELSKVLDSPVT 260
Query: 347 ISILESLVQNVEASNLNTILS----SLQSLKMMDRKDAVMDKMKEYLESTAR--RLNLVA 400
+++ L + ++ N +L +L + M D ++ K+ Y + + RL++ A
Sbjct: 261 HALVPELGLQLAMASCNALLRYLGPALLNPDMEDDRENTSRKLHLYHHNLEQYMRLDIAA 320
Query: 401 DKTIKLENSPQGFAYRITMKL 421
+++ L P G A++ TM L
Sbjct: 321 VRSLNLLPPPNGNAHK-TMSL 340
>TAIR|locus:2095097 [details] [associations]
symbol:MSH2 "AT3G18524" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=ISS;IDA] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP catabolic
process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS;IMP] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0032302 "MutSbeta complex" evidence=IEA;IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IMP] [GO:0006290 "pyrimidine dimer repair"
evidence=IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016570 "histone modification" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0031507 "heterochromatin assembly"
evidence=RCA] [GO:0045787 "positive regulation of cell cycle"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005886 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003684 EMBL:AB026658 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 EMBL:AP001303
GO:GO:0008094 GO:GO:0006290 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 EMBL:AF026549 EMBL:AF109243
EMBL:AF002706 EMBL:AF003005 EMBL:U87911 IPI:IPI00526204
RefSeq:NP_566804.3 UniGene:At.10475 ProteinModelPortal:O24617
SMR:O24617 STRING:O24617 PaxDb:O24617 PRIDE:O24617
EnsemblPlants:AT3G18524.1 GeneID:821383 KEGG:ath:AT3G18524
TAIR:At3g18524 HOGENOM:HOG000196498 InParanoid:O24617 KO:K08735
OMA:WAISEHI PhylomeDB:O24617 ProtClustDB:CLSN2680872
Genevestigator:O24617 GermOnline:AT3G18524 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 Uniprot:O24617
Length = 937
Score = 815 (292.0 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 195/558 (34%), Positives = 320/558 (57%)
Query: 271 LAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGL 330
L Q ++Q LK + + ++ + + L++ +R LP +++ + + A L
Sbjct: 366 LRQDLRQHLKRISDVERLLRSLERRRGGLQHIIKLYQSTIR-LPFIKTAMQQYTGEFASL 424
Query: 331 -KDCY-RVYEGVSQ---LPKLISILESLVQNVEASNLNTILSSLQSLKMM---DRKDAVM 382
+ Y + E +S L K I ++E V + N ++SS K+ D+K+ +
Sbjct: 425 ISERYLKKLEALSDQDHLGKFIDLVECSVDLDQLENGEYMISSSYDTKLASLKDQKELLE 484
Query: 383 DKMKEYLESTARRLNLVADKTIKLENSPQ-GFAYRITMK----LNNSIDDRYTILDTVRG 437
++ E + TA L+L DK +KL+ + Q G +RIT K + + ++ +L+T +
Sbjct: 485 QQIHELHKKTAIELDLQVDKALKLDKAAQFGHVFRITKKEEPKIRKKLTTQFIVLETRKD 544
Query: 438 GVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVS 497
GV+F + +L QYQ++ +Y + Q+ +V+ V+ +++ L+ +L++ DVL+S
Sbjct: 545 GVKFTNTKLKKLGDQYQSVVDDYRSCQKELVDRVVETVTSFSEVFEDLAGLLSEMDVLLS 604
Query: 498 FS-IASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNL 556
F+ +A++C P PY RP + G +VL RHP VE Q V++IPND G+ F +
Sbjct: 605 FADLAASC-PTPYCRPEITSSDAGDIVLEGSRHPCVEAQDWVNFIPNDCRLMRGKSWFQI 663
Query: 557 VTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFM 616
VTGPNMGGKST+IR +GV V +AQ+G FVPCD A+IS+ D IF RVGA D Q RG+STFM
Sbjct: 664 VTGPNMGGKSTFIRQVGVIVLMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFM 723
Query: 617 MEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHE 676
EM ETA+++K ++ SL+IIDELGRGTST+DGFG+A +I L ++ TLFATHFHE
Sbjct: 724 QEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKRAPTLFATHFHE 783
Query: 677 IALLSRVIPTFR-------NVQVSA-LEQEDN-LVLLYQVKPGSCVKSYGVHCAKMAGYP 727
+ L++ N VSA ++ E L +LY+V+PG+C +S+G+H A+ A +P
Sbjct: 784 LTALAQANSEVSGNTVGVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFANFP 843
Query: 728 EDMLEQARDLMKEYE-YSLDTKTPSGDETNNRE--EEYFKTVQEGEYQMFDFLQQ--CLS 782
E ++ AR+ E E +S + + +E+ R+ E+ V G + FL++ +
Sbjct: 844 ESVVALAREKAAELEDFSPSSMIINNEESGKRKSREDDPDEVSRGAERAHKFLKEFAAIP 903
Query: 783 LSKQKDTNRILHLQETQE 800
L K + + + ++E ++
Sbjct: 904 LDKMELKDSLQRVREMKD 921
Score = 373 (136.4 bits), Expect = 8.7e-31, P = 8.7e-31
Identities = 103/361 (28%), Positives = 181/361 (50%)
Query: 34 LIQRKSNVVYLVKTMGQKDKTLETVLVNKSNLSCFSHILCVISEDKTLETVLTN------ 87
L++R + V L + G + ++T + N+ F +L +E + V++
Sbjct: 96 LLERNDHTVELYEGSGSNWRLVKTG--SPGNIGSFEDVLFANNEMQDTPVVVSIFPSFHD 153
Query: 88 ---TVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNK-IVT 143
+G+A VDL + + E DD ++NLE+ ++ KEC+ PAE N+ K +
Sbjct: 154 GRCVIGMAYVDLTRRVLGLAEFLDDSRFTNLESSLIALGAKECIFPAESGKSNECKSLYD 213
Query: 144 ILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLIN 203
L+R V +T RKK+EF DL D+ RLV+ + +++ L+ L AT L +L++
Sbjct: 214 SLERCAVMITERKKHEFKGRDLDSDLKRLVKGNIEPVRD--LVSGFDL--ATPALGALLS 269
Query: 204 YLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDR-C 262
+ EL++NEDN F+I D ++ + SA M +L+V+ + T A SL G+++R C
Sbjct: 270 FSELLSNEDNYGNFTIRRYDIGGFMRLDSAAMRALNVM--ESKTDANKNFSLFGLMNRTC 327
Query: 263 RTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMR 322
G RLL W+KQPL DL+ I R V V R +L ++ L+ + D++ L
Sbjct: 328 TAGMGKRLLHMWLKQPLVDLNEIKTRLDIVQCFVEEAGLRQDLRQH-LKRISDVERLLRS 386
Query: 323 IGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVM 382
+ R++ GL+ ++Y+ +LP + + ++ + L L++L D +
Sbjct: 387 LERRRGGLQHIIKLYQSTIRLPFIKTAMQQYTGEFASLISERYLKKLEALSDQDHLGKFI 446
Query: 383 D 383
D
Sbjct: 447 D 447
Score = 80 (33.2 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 19/82 (23%), Positives = 40/82 (48%)
Query: 4 YLFFFPQKSKTT--IRFFNRVEFYCVHGEDAELIQRKS-NVVYLVKTMGQKDKTLETVLV 60
+L F+ T +RFF+R ++Y HGE++ I + + ++ +G L +V +
Sbjct: 24 FLSFYKTLPNDTRAVRFFDRKDYYTAHGENSVFIAKTYYHTTTALRQLGSGSNALSSVSI 83
Query: 61 NKSNLSCFSHILCVISEDKTLE 82
+++ + L + D T+E
Sbjct: 84 SRNMFETIARDLLLERNDHTVE 105
>DICTYBASE|DDB_G0275809 [details] [associations]
symbol:msh2 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0032302 "MutSbeta complex"
evidence=IEA;ISS;IBA] [GO:0032301 "MutSalpha complex"
evidence=IEA;ISS;IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0042803 "protein
homodimerization activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0006301 "postreplication repair"
evidence=ISS;IBA] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0045128
"negative regulation of reciprocal meiotic recombination"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 dictyBase:DDB_G0275809 GO:GO:0005524 GO:GO:0042803
GO:GO:0003684 GenomeReviews:CM000151_GR EMBL:AAFI02000013
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:XP_643399.1
HSSP:P23909 ProteinModelPortal:Q553L4 STRING:Q553L4 PRIDE:Q553L4
EnsemblProtists:DDB0229897 GeneID:8619985 KEGG:ddi:DDB_G0275809
ProtClustDB:CLSZ2430933 Uniprot:Q553L4
Length = 937
Score = 799 (286.3 bits), Expect = 2.8e-84, Sum P(2) = 2.8e-84
Identities = 176/439 (40%), Positives = 268/439 (61%)
Query: 340 VSQLPKLISILESLVQNVEASNLN--TILSSL-QSLKMMD-RKDAVMDKMKEYLESTARR 395
+S K +++E + A++ + I SS ++L+ + +KD + +K++ + A
Sbjct: 478 ISDFAKFCAMVEKTIDLDLANDKHEYVIRSSFDETLRGIQLKKDQISNKIERFRVDIADD 537
Query: 396 LNLVADKTIKLENSPQG-FAYRITMKLNNSIDDR--YTILDTVRGGVRFQDDRLATANTQ 452
LNL K +KL S + F RI+ K +I D+ Y + T + GVRF + T N
Sbjct: 538 LNLDEAK-VKLHYSEKDMFLLRISRKDEVAIRDKKKYIVHATAKDGVRFATREIDTLNEA 596
Query: 453 YQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRP 512
Y+ EY Q + + + I+A + + LS ++A DV V+ S S+ AP P++RP
Sbjct: 597 YKKWSAEYLDKQDGLAKRTLQIAASFVPLIEDLSSLIATLDVFVTLSHVSSIAPIPFIRP 656
Query: 513 CMKPMGT-----GSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKST 567
+ P+G+ G++++ RHP VE+Q V++I ND+ G+ F ++TGPNMGGKST
Sbjct: 657 EIIPLGSDENGAGTVIIGG-RHPCVEIQDNVNFIANDIDLTRGQSQFQIITGPNMGGKST 715
Query: 568 YIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK 627
+IR +G+ V +AQIGCFVP ATI+VVD I +RVGA DSQ RG+STFM EM ET+ ++K
Sbjct: 716 FIRQVGLIVLMAQIGCFVPAQKATIAVVDCILSRVGAGDSQLRGVSTFMAEMLETSYILK 775
Query: 628 KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTF 687
T+NSL+IIDELGRGTST+DGFG+A IA + + F LFATHFHE+ +LS ++P
Sbjct: 776 VATKNSLIIIDELGRGTSTYDGFGLAWGIAEYICNQIGGFCLFATHFHELTILSDLLPMV 835
Query: 688 RNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDT 747
+N+ VSA Q + LLY+V+ G C +S+G+H A +A +P ++E A+ KE E S ++
Sbjct: 836 KNLHVSASTQNNTFTLLYKVEQGPCDQSFGIHVAILANFPSQVIENAKQKAKELE-SFES 894
Query: 748 KTPSGDETNNREEEYFKTV 766
T + +N+ E FK +
Sbjct: 895 NTLK--QNHNKFLEEFKEI 911
Score = 321 (118.1 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 108/398 (27%), Positives = 187/398 (46%)
Query: 56 ETVLVNKSNLSCFSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNL 115
E VL+N + C ++ + + +++ G++ D K + + D+D SNL
Sbjct: 158 EDVLLNGN---CEGSVMMALKVTREKGSIV---FGISFGDATFKTIGVSQFMDNDNLSNL 211
Query: 116 EAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRF 175
+ I+Q S KECLL + N + K+ L + T K++FS ++ QD+ RL+
Sbjct: 212 SSFIMQMSVKECLLCCDQKNYDYQKVKEKLSDAGIPFTELPKSDFSSKNAEQDLTRLL-- 269
Query: 176 DDSELKNARLLPEMCLTTATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVM 235
+KN LP++ A LI +L+L++N + +F + D +Y+ + S+
Sbjct: 270 --GSVKNN--LPDIEQEHAIQSASCLIKHLDLLSNPNYFGKFKLEKYDLDRYMKLDSSSF 325
Query: 236 SSLHVLPQQ--------------GSTSAQTYD-SLLGILDRCRTPQGHRLLAQWMKQPLK 280
LH++ + G++S+ D SL +L++C TP G RLL QW+KQPL
Sbjct: 326 KGLHIIDLKDSSVSAAAGGGGAGGASSSSNKDQSLYNLLNQCNTPMGSRLLLQWVKQPLL 385
Query: 281 DLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGV 340
+ + I R V N+ E R +L L+ + D+ L+ ++ +KA L+DC +Y V
Sbjct: 386 NAEEIEARLNFVEAFYNDLELRQSLRSNDLKKIGDLDRLSKKLHGQKATLEDCVNLYGIV 445
Query: 341 SQLPKLI-------SILESLVQNVEASNLNTILSSLQSLKMMDRK----DAVMDKMKEYL 389
++LP ++ SI + L++ +L +I+S M K D DK EY+
Sbjct: 446 TRLPVVLQSLNNHSSIHQELIKVNFIESLESIISDFAKFCAMVEKTIDLDLANDK-HEYV 504
Query: 390 -----ESTARRLNLVADKTIKLENSPQGFAYRITMKLN 422
+ T R + L D+ + N + F I LN
Sbjct: 505 IRSSFDETLRGIQLKKDQ---ISNKIERFRVDIADDLN 539
Score = 64 (27.6 bits), Expect = 2.8e-84, Sum P(2) = 2.8e-84
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 15 TIRFFNRVEFYCVHGEDAELI 35
TIR F+R +Y +HGEDA +
Sbjct: 36 TIRLFDRKGYYSIHGEDAVFV 56
>SGD|S000005450 [details] [associations]
symbol:MSH2 "Protein that forms heterodimers with Msh3p and
Msh6p that bind to DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA;IDA] [GO:0006298 "mismatch
repair" evidence=IEA;IMP] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IPI]
[GO:0032302 "MutSbeta complex" evidence=IEA;IPI] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0000735 "removal of nonhomologous ends"
evidence=IGI;IMP] [GO:0000710 "meiotic mismatch repair"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IGI] [GO:0006311 "meiotic gene conversion" evidence=IMP]
[GO:0032135 "DNA insertion or deletion binding" evidence=IDA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IMP;IDA] [GO:0006310 "DNA recombination" evidence=IMP]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
SGD:S000005450 GO:GO:0005524 EMBL:BK006948 GO:GO:0003684
GO:GO:0030466 EMBL:X83121 GO:GO:0030983 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0006301 GO:GO:0008094 GO:GO:0036297
GO:GO:0006311 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0000710 GO:GO:0032301 HOGENOM:HOG000196498
KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GeneTree:ENSGT00550000074867 OrthoDB:EOG4S7NZ5 GO:GO:0000735
EMBL:M84170 EMBL:Z74832 PIR:S57379 RefSeq:NP_014551.1
ProteinModelPortal:P25847 SMR:P25847 DIP:DIP-2415N IntAct:P25847
MINT:MINT-631153 STRING:P25847 PaxDb:P25847 PeptideAtlas:P25847
EnsemblFungi:YOL090W GeneID:854063 KEGG:sce:YOL090W CYGD:YOL090w
NextBio:975668 Genevestigator:P25847 GermOnline:YOL090W
Uniprot:P25847
Length = 964
Score = 801 (287.0 bits), Expect = 5.1e-83, Sum P(2) = 5.1e-83
Identities = 175/449 (38%), Positives = 273/449 (60%)
Query: 373 KMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSP-QGFAYRITMKLNNSI--DDRY 429
K+ + D + D++ +A L DK +KLEN G+ R+T + +Y
Sbjct: 498 KIRSKLDTLRDEIHSIHLDSAEDLGFDPDKKLKLENHHLHGWCMRLTRNDAKELRKHKKY 557
Query: 430 TILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVL 489
L TV+ G+ F +L + + +Q+EY+ Q ++V E+I I+ YT +LS VL
Sbjct: 558 IELSTVKAGIFFSTKQLKSIANETNILQKEYDKQQSALVREIINITLTYTPVFEKLSLVL 617
Query: 490 AQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLV-LNQCRHPIVELQGGVSYIPNDVYFK 548
A DV+ SF+ S+ AP PY+RP + PM + L RHP++E+Q +S+I NDV +
Sbjct: 618 AHLDVIASFAHTSSYAPIPYIRPKLHPMDSERRTHLISSRHPVLEMQDDISFISNDVTLE 677
Query: 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQ 608
SG+ F ++TGPNMGGKSTYIR +GV +AQIGCFVPC+ A I++VD I RVGA DSQ
Sbjct: 678 SGKGDFLIITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIAIVDAILCRVGAGDSQ 737
Query: 609 YRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFT 668
+G+STFM+E+ ETA+++K ++NSL+I+DELGRGTST+DGFG+A +IA +AS F
Sbjct: 738 LKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLAWAIAEHIASKIGCFA 797
Query: 669 LFATHFHEIALLSRVIPTFRNVQVSA-LEQ--------EDNLVLLYQVKPGSCVKSYGVH 719
LFATHFHE+ LS +P +N+ V A +E+ ++++ LLY+V+PG +S+G+H
Sbjct: 798 LFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLLYKVEPGISDQSFGIH 857
Query: 720 CAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETNNREEEYFKTVQEGEYQMFDFLQQ 779
A++ +PE +++ A+ E + D KT +E + + + V EG ++ L++
Sbjct: 858 VAEVVQFPEKIVKMAKRKANELD---DLKT--NNEDLKKAKLSLQEVNEGNIRLKALLKE 912
Query: 780 CLSLSKQK---DTNRILHLQETQEPGIEE 805
+ K++ D ++I +E + I+E
Sbjct: 913 WIRKVKEEGLHDPSKIT--EEASQHKIQE 939
Score = 364 (133.2 bits), Expect = 8.5e-30, Sum P(2) = 8.5e-30
Identities = 118/442 (26%), Positives = 220/442 (49%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKN----KIVTI 144
+GVA +D K M +I D++ YSNLE+ ++Q KECL+ N N N K++ +
Sbjct: 157 IGVAFIDTTAYKVGMLDIVDNEVYSNLESFLIQLGVKECLVQDLTSNSNSNAEMQKVINV 216
Query: 145 LDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINY 204
+DR +T K +EFSE+D+ D+ +L+ DD L LP+ + +LI Y
Sbjct: 217 IDRCGCVVTLLKNSEFSEKDVELDLTKLLG-DDLALS----LPQKYSKLSMGACNALIGY 271
Query: 205 LELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQ-------------QGSTSAQT 251
L+L++ +D + ++ + +++ + ++ + +L++ PQ G TSA
Sbjct: 272 LQLLSEQDQVGKYELVEHKLKEFMKLDASAIKALNLFPQGPQNPFGSNNLAVSGFTSAGN 331
Query: 252 ---YDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEY 308
SL +L+ C+T G RLL +W+KQPL ++D I +RH V+ L++ E R L
Sbjct: 332 SGKVTSLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYLIDQIELRQMLTSE 391
Query: 309 ALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASN-LNTILS 367
L +PD++ L ++ K+ L+D ++Y+ ++P+++ + S +++ + +N ++
Sbjct: 392 YLPMIPDIRRLTKKLN-KRGNLEDVLKIYQFSKRIPEIVQVFTSFLEDDSPTEPVNELVR 450
Query: 368 SLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKT---IKLE-NSPQGFAYRITMKLNN 423
S+ L + + K +E +E+T L+ + IK+E N G +I KL+
Sbjct: 451 SVW-LAPLSHHVEPLSKFEEMVETTVD-LDAYEENNEFMIKVEFNEELG---KIRSKLDT 505
Query: 424 SIDDRYTI-LDTVRGGVRFQDDR-LATANTQYQA----IQR----EYETHQQSIVEEVIG 473
D+ ++I LD+ + F D+ L N + R E H++ I E+
Sbjct: 506 LRDEIHSIHLDSAED-LGFDPDKKLKLENHHLHGWCMRLTRNDAKELRKHKKYI--ELST 562
Query: 474 ISAGYTQTLNQLSDVLAQFDVL 495
+ AG + QL + + ++L
Sbjct: 563 VKAGIFFSTKQLKSIANETNIL 584
Score = 50 (22.7 bits), Expect = 5.1e-83, Sum P(2) = 5.1e-83
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 9 PQKSKTTIRFFNRVEFYCVHGEDA 32
P+K TIR ++ ++Y V G DA
Sbjct: 27 PKKPLKTIRLVDKGDYYTVIGSDA 50
>UNIPROTKB|Q7RQK0 [details] [associations]
symbol:PY01096 "MutS homolog 2-related" species:73239
"Plasmodium yoelii yoelii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01000289 RefSeq:XP_728672.1
ProteinModelPortal:Q7RQK0 STRING:Q7RQK0 GeneID:3801212
KEGG:pyo:PY01096 EuPathDB:PlasmoDB:PY01096 Uniprot:Q7RQK0
Length = 853
Score = 600 (216.3 bits), Expect = 1.0e-79, Sum P(2) = 1.0e-79
Identities = 139/376 (36%), Positives = 210/376 (55%)
Query: 413 FAYRITMKLNNSIDDRYTILDTVR---GGVRFQDDRLATANTQYQAIQREYETHQQSIVE 469
F +R K I R + VR + F ++L QYQ + Y T Q+ +
Sbjct: 445 FLFRAVKKDIIFIQQRKKTYNQVRVNKNEILFNTNKLRDLCKQYQYVLHSYNTSQEHLAN 504
Query: 470 EVIGISAGYTQTLNQLSDVLAQFDVLVSFS-IASTCAPKPYVRPCMKPMGTGSLVLNQCR 528
+ I +++ Y + N+LS +++Q D+ SF+ + S C YVRP ++ G L + R
Sbjct: 505 KAIEVASSYWEPFNKLSKIISQIDIFCSFAYVISQCI-STYVRPIVEQNGK-VLEIKNSR 562
Query: 529 HPIVE---LQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFV 585
HP+VE LQ ++IPND++ N++TGPNMGGKSTYIR I + +A IGCFV
Sbjct: 563 HPLVEANYLQIK-NFIPNDIHMDKENNRLNIITGPNMGGKSTYIRQIAIISLMAHIGCFV 621
Query: 586 PCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTS 645
P A I + QI R+G++D Q +GISTF EM E + +IK ++LVIIDELGRGTS
Sbjct: 622 PSTYAKIPIFSQIMCRIGSSDIQLKGISTFFSEMIEVSAIIKNADSDTLVIIDELGRGTS 681
Query: 646 TFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL--EQEDNLVL 703
T++GFG++ S+A L ++ + LFATHFHEI+ L N VSA E + +
Sbjct: 682 TYEGFGISWSVANYLLNNIKCLCLFATHFHEISNLEDEHAAVSNNHVSAKIDEAKKKISF 741
Query: 704 LYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE-----YSLDTKTPSGDETNNR 758
LY++K G KSYGVH A++A P+ +++++ + KE E + K S ++ N+
Sbjct: 742 LYEIKKGFADKSYGVHVAQIAKLPQKVIDKSFEKSKELESIENKHYFKNKLKSNNDNNSI 801
Query: 759 EEEYFKTVQEGEYQMF 774
E + KT + + +
Sbjct: 802 EYDKAKTEMHNKCEAY 817
Score = 221 (82.9 bits), Expect = 1.0e-79, Sum P(2) = 1.0e-79
Identities = 67/252 (26%), Positives = 128/252 (50%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECL-LPAEYLNDNKN-KIVTILD 146
VG+ I + T +F + E ++D+++ LE+I++Q +P + LP + DNK ++ L
Sbjct: 22 VGICIYNNTTNEFSLSEYIENDHFTTLESILIQTNPDSLIYLPCNNILDNKRINLICNLC 81
Query: 147 RNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLE 206
K+C K+ F + D+ +L+ +D ++KN + + LT L S+I YL
Sbjct: 82 EIKLCELN--KDIFQIMSIETDLEKLINVND-DVKN--YVSFLNLTLGCKALSSIIKYLN 136
Query: 207 LMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSL----HVLPQQ-----GS--TSAQTYD-- 253
L+N + +N+ ++ + SKYV + A + SL ++ +Q GS T +Q +
Sbjct: 137 LLNEDSAINKCTLKWYNISKYVKLDKAAICSLNINTYISKEQKNGIGGSQQTLSQNHGGN 196
Query: 254 --SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALR 311
+L L++C+T G R L +W+ P++D I +R V I+ ++ R + LR
Sbjct: 197 TMTLYKFLNKCKTKIGERKLLKWIMHPIRDEKKINQRLDMVEIMNDDQALRSMIQGEYLR 256
Query: 312 GLPDMQSLAMRI 323
+ D+ + ++
Sbjct: 257 KVCDLDLIIKKL 268
Score = 45 (20.9 bits), Expect = 3.6e-61, Sum P(2) = 3.6e-61
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 331 KDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSL-KMMD--RKDAVMDK--M 385
KD +++ + L KLI++ + + V NL +L S+ K ++ +D+ ++K +
Sbjct: 90 KDIFQIMSIETDLEKLINVNDDVKNYVSFLNLTLGCKALSSIIKYLNLLNEDSAINKCTL 149
Query: 386 KEYLESTARRLNLVA 400
K Y S +L+ A
Sbjct: 150 KWYNISKYVKLDKAA 164
Score = 41 (19.5 bits), Expect = 9.4e-61, Sum P(2) = 9.4e-61
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 30 EDAELIQRKSNVVYL--VKT----MGQKDKTLETVLVNKSNL 65
ED +LI +NV VK + Q+ KT V VNK+ +
Sbjct: 433 EDVKLIDCNTNVFLFRAVKKDIIFIQQRKKTYNQVRVNKNEI 474
Score = 40 (19.1 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 775 DFLQQCLSLSKQKDT--NRILHLQETQEPGIEEYQSFDK 811
+F ++LSK+K+ +ILH + E I + DK
Sbjct: 378 NFDDNLMALSKEKEEIYKQILHHRSEVEEDINYLKKGDK 416
Score = 39 (18.8 bits), Expect = 1.5e-60, Sum P(2) = 1.5e-60
Identities = 18/86 (20%), Positives = 31/86 (36%)
Query: 281 DLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGV 340
DLD I+++ N +V N N H G +S K ++D ++Y+ V
Sbjct: 260 DLDLIIKKLKIANNIVKNNNMSDN-H-----GAKQNRSFGN--SNNKCTIEDLVKLYDTV 311
Query: 341 SQLPKLISILESLVQNVEASNLNTIL 366
+ L+ + N L
Sbjct: 312 IASKNIYHALDEYNNGTQKKNTKKTL 337
>UNIPROTKB|B1N4L6 [details] [associations]
symbol:EHI_123830 "DNA mismatch repair protein Msh2,
putative" species:5759 "Entamoeba histolytica" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 EMBL:DS571433 RefSeq:XP_001914132.1
ProteinModelPortal:B1N4L6 STRING:B1N4L6 GeneID:6220147
KEGG:ehi:EHI_123830 EuPathDB:AmoebaDB:EHI_123830 InParanoid:B1N4L6
ProtClustDB:CLSZ2734733 Uniprot:B1N4L6
Length = 630
Score = 642 (231.1 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 137/376 (36%), Positives = 217/376 (57%)
Query: 369 LQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSI--D 426
LQ ++ +K V + ++ LE A LN+ DK IK+ R++ + +
Sbjct: 178 LQKIRESHKK--VEELFEKCLEQAANDLNIKTDK-IKIVEHNNNLILRVSKSNEKEVKKN 234
Query: 427 DRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLS 486
+YTI+ T++G +F + T N + ++ + E + +EE+ + GY + +L
Sbjct: 235 KKYTIIQTLKGECKFTFKEMQTLNVKRDKLKLKEEEINKKFIEEINKVVEGYKEKFQELE 294
Query: 487 DVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVY 546
+++ D + SF+ S + Y +P + G + + + RHP++E S+I ND+
Sbjct: 295 NMIGYIDCIQSFATVSIDNNQGYSKPTIYESEKGIIKIIKARHPLIENNSINSFIENDID 354
Query: 547 FKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAAD 606
E F ++TGPNMGGKSTY+R IG+ V +AQIG F+PC A IS+ D+I R+GA D
Sbjct: 355 IDRKETRFQIITGPNMGGKSTYLRMIGLCVIMAQIGMFIPCSEAHISICDKIMCRIGAGD 414
Query: 607 SQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQP 666
+ G+STFM EMK+T+ +IKK T+NSLV+IDELGRGTST+DGFG+A +I+ LA
Sbjct: 415 NIVEGMSTFMSEMKDTSEIIKKSTKNSLVLIDELGRGTSTYDGFGIAWAISEYLAIDIGC 474
Query: 667 FTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGY 726
+ +FATHFHEI L + + N V A + LVL Y++ GS +S ++ A+ A +
Sbjct: 475 YCVFATHFHEITGLEKRVTGVINKHVEADIIDKQLVLKYKINNGSTDQSLAIYVAEWADF 534
Query: 727 PEDMLEQARDLMKEYE 742
P +++E A+ KE +
Sbjct: 535 PHEVVESAKRKAKELD 550
Score = 115 (45.5 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 33/114 (28%), Positives = 58/114 (50%)
Query: 259 LDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQS 318
L+R T G +++ +W+KQPL D D I +R V +N+ R+ + L +PD++
Sbjct: 35 LNRTHTKIGEKMIKEWIKQPLIDKDKINKRLELVEGFYDNSGIRLKIKNEELAIIPDLEK 94
Query: 319 LAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSL 372
L G K+ L+ ++YE V ++ K +I E L + S I+ L+ +
Sbjct: 95 LIK--GINKSDLESIVKLYEAV-RISK--NIKEELKEMNNKSIEKEIIEPLEKI 143
>WB|WBGene00003418 [details] [associations]
symbol:msh-2 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0032301
"MutSalpha complex" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032302 "MutSbeta complex" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IMP]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 KO:K08735 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 GeneTree:ENSGT00550000074867
OMA:HINERLD EMBL:FO080998 PIR:C87740 RefSeq:NP_491202.1
ProteinModelPortal:Q9TXR4 SMR:Q9TXR4 IntAct:Q9TXR4 MINT:MINT-227660
STRING:Q9TXR4 PaxDb:Q9TXR4 EnsemblMetazoa:H26D21.2.1
EnsemblMetazoa:H26D21.2.2 EnsemblMetazoa:H26D21.2.3 GeneID:171938
KEGG:cel:CELE_H26D21.2 UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2
InParanoid:Q9TXR4 NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 667 (239.9 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 149/383 (38%), Positives = 230/383 (60%)
Query: 370 QSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRY 429
+ L+ M+R V +K+++ + NL DK NS GF +R+T+K SI +
Sbjct: 458 EKLEQMER---VAEKLRKKYSAKFECDNLKLDK-----NSQYGFYFRVTLKEEKSIRKKD 509
Query: 430 T-ILDTVRG-GVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSD 487
IL+T +G GV+F L+ N ++ +Y ++ ++ + + + + ++
Sbjct: 510 VHILETTKGSGVKFSVGELSDINDEFLEFHLKYTRAEEEVISMLCKKAEEFIPLIPAMAQ 569
Query: 488 VLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYF 547
++A DV VS S + + Y RP + P+G+ L L QCRHP++E +IPNDV
Sbjct: 570 LIATLDVFVSLSTFAATSSGIYTRPNLLPLGSKRLELKQCRHPVIEGNSEKPFIPNDVVL 629
Query: 548 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADS 607
+ ++TG NMGGKSTY+RS +S+ LAQIG FVPC SATISVVD IFTRVGA+D
Sbjct: 630 DKCRLI--ILTGANMGGKSTYLRSAALSILLAQIGSFVPCSSATISVVDGIFTRVGASDK 687
Query: 608 QYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPF 667
Q +GISTFM EM + + ++++ T+NS V+IDELGRGTSTFDGFG+A +IA+++ + Q
Sbjct: 688 QSQGISTFMAEMLDCSAILQRATKNSFVVIDELGRGTSTFDGFGIASAIAQDILNRIQCL 747
Query: 668 TLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYP 727
++FATHFHE+ L+ P +Q+ + + + +LY+V G S+G+ AKM G
Sbjct: 748 SIFATHFHEMGKLAEQ-PGAVALQMGVQIENNEIHMLYKVFEGVAQCSFGLQVAKMVGID 806
Query: 728 EDMLEQARDLMKEYEYSL--DTK 748
E+++ +A L++ E L D+K
Sbjct: 807 ENVINKAAQLLEGLEKKLVIDSK 829
Score = 180 (68.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 98/422 (23%), Positives = 183/422 (43%)
Query: 87 NTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAE-YLNDNKNKIVTIL 145
N V + D + + E D +S E I P E +L E + KI ++
Sbjct: 141 NRVTLCAWDAGNVRIVISEYIDTPSFSQTEQCIFGLCPTEYILVNEGSVAPKAKKIASMF 200
Query: 146 DRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYL 205
R +V + K + D+++ V+ L D++E +N + CL+ L +
Sbjct: 201 TRMEVHNKQQLKPKSQWSDVIESVH-LDYKDEAEKQNENI---------KECLQILHS-- 248
Query: 206 ELMNNEDNMNQFSIHSI-DYSKYVHM--SSAVMSSLHVLPQQGSTSAQTYD-SLLGILDR 261
N D + +SI +Y + +M S + +L + + ++ + +L +L++
Sbjct: 249 ---NAADEYSISEKYSIFNYGTHGNMLIDSCAVEALELFQLNYNYLEKSNNLTLYNVLNK 305
Query: 262 CRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAM 321
C+T G +LL W+ +PL +D I ER V L N R L + L +PD LA
Sbjct: 306 CKTLPGEKLLRDWLSRPLCQIDHINERLDIVEALFENQTIRQKLRDSILARMPDCSQLAR 365
Query: 322 RIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVE-ASNLNTILSS--LQSLKMMDRK 378
R+ RK L+D R Y+ + L + L L + + A ++N +L S + LK ++R
Sbjct: 366 RLMRK-CTLQDLNRFYQAATLLETVEMQLIQLSEAEQFAPSINRLLKSEITEILKKVERF 424
Query: 379 DAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRG- 437
+ D E+ + + N K I++ F I +++ ++ + + +R
Sbjct: 425 QVLCD---EFFDFDYEKEN----KEIRVRVD---FVPEI-QEISEKLEQMERVAEKLRKK 473
Query: 438 -GVRFQDDRLAT-ANTQYQAIQREYETHQQSIVEEVIGI-----SAGYTQTLNQLSDVLA 490
+F+ D L N+QY R ++SI ++ + I +G ++ +LSD+
Sbjct: 474 YSAKFECDNLKLDKNSQYGFYFRVTLKEEKSIRKKDVHILETTKGSGVKFSVGELSDIND 533
Query: 491 QF 492
+F
Sbjct: 534 EF 535
Score = 67 (28.6 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 2 KFYLFFFPQKSKTTIRFFNRVEFYCVHGEDAELIQR---KSNVVYLVKTMG-QKDKTLET 57
K L KS TI F+R E++ V+G+DA + KS+V T+ + ++
Sbjct: 11 KALLKILKSKSPNTIAIFSRGEYFSVYGDDATFVATNIFKSDVCVKTFTLSTDNSQQMKY 70
Query: 58 VLVNK 62
+ VN+
Sbjct: 71 ISVNR 75
>UNIPROTKB|Q9TXR4 [details] [associations]
symbol:msh-2 "Protein MSH-2" species:6239 "Caenorhabditis
elegans" [GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IBA] [GO:0010224 "response to UV-B" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006302 "double-strand break
repair" evidence=IBA] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0042771 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GeneTree:ENSGT00550000074867 OMA:HINERLD EMBL:FO080998 PIR:C87740
RefSeq:NP_491202.1 ProteinModelPortal:Q9TXR4 SMR:Q9TXR4
IntAct:Q9TXR4 MINT:MINT-227660 STRING:Q9TXR4 PaxDb:Q9TXR4
EnsemblMetazoa:H26D21.2.1 EnsemblMetazoa:H26D21.2.2
EnsemblMetazoa:H26D21.2.3 GeneID:171938 KEGG:cel:CELE_H26D21.2
UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2 InParanoid:Q9TXR4
NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 667 (239.9 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 149/383 (38%), Positives = 230/383 (60%)
Query: 370 QSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRY 429
+ L+ M+R V +K+++ + NL DK NS GF +R+T+K SI +
Sbjct: 458 EKLEQMER---VAEKLRKKYSAKFECDNLKLDK-----NSQYGFYFRVTLKEEKSIRKKD 509
Query: 430 T-ILDTVRG-GVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSD 487
IL+T +G GV+F L+ N ++ +Y ++ ++ + + + + ++
Sbjct: 510 VHILETTKGSGVKFSVGELSDINDEFLEFHLKYTRAEEEVISMLCKKAEEFIPLIPAMAQ 569
Query: 488 VLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYF 547
++A DV VS S + + Y RP + P+G+ L L QCRHP++E +IPNDV
Sbjct: 570 LIATLDVFVSLSTFAATSSGIYTRPNLLPLGSKRLELKQCRHPVIEGNSEKPFIPNDVVL 629
Query: 548 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADS 607
+ ++TG NMGGKSTY+RS +S+ LAQIG FVPC SATISVVD IFTRVGA+D
Sbjct: 630 DKCRLI--ILTGANMGGKSTYLRSAALSILLAQIGSFVPCSSATISVVDGIFTRVGASDK 687
Query: 608 QYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPF 667
Q +GISTFM EM + + ++++ T+NS V+IDELGRGTSTFDGFG+A +IA+++ + Q
Sbjct: 688 QSQGISTFMAEMLDCSAILQRATKNSFVVIDELGRGTSTFDGFGIASAIAQDILNRIQCL 747
Query: 668 TLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYP 727
++FATHFHE+ L+ P +Q+ + + + +LY+V G S+G+ AKM G
Sbjct: 748 SIFATHFHEMGKLAEQ-PGAVALQMGVQIENNEIHMLYKVFEGVAQCSFGLQVAKMVGID 806
Query: 728 EDMLEQARDLMKEYEYSL--DTK 748
E+++ +A L++ E L D+K
Sbjct: 807 ENVINKAAQLLEGLEKKLVIDSK 829
Score = 180 (68.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 98/422 (23%), Positives = 183/422 (43%)
Query: 87 NTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAE-YLNDNKNKIVTIL 145
N V + D + + E D +S E I P E +L E + KI ++
Sbjct: 141 NRVTLCAWDAGNVRIVISEYIDTPSFSQTEQCIFGLCPTEYILVNEGSVAPKAKKIASMF 200
Query: 146 DRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYL 205
R +V + K + D+++ V+ L D++E +N + CL+ L +
Sbjct: 201 TRMEVHNKQQLKPKSQWSDVIESVH-LDYKDEAEKQNENI---------KECLQILHS-- 248
Query: 206 ELMNNEDNMNQFSIHSI-DYSKYVHM--SSAVMSSLHVLPQQGSTSAQTYD-SLLGILDR 261
N D + +SI +Y + +M S + +L + + ++ + +L +L++
Sbjct: 249 ---NAADEYSISEKYSIFNYGTHGNMLIDSCAVEALELFQLNYNYLEKSNNLTLYNVLNK 305
Query: 262 CRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAM 321
C+T G +LL W+ +PL +D I ER V L N R L + L +PD LA
Sbjct: 306 CKTLPGEKLLRDWLSRPLCQIDHINERLDIVEALFENQTIRQKLRDSILARMPDCSQLAR 365
Query: 322 RIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVE-ASNLNTILSS--LQSLKMMDRK 378
R+ RK L+D R Y+ + L + L L + + A ++N +L S + LK ++R
Sbjct: 366 RLMRK-CTLQDLNRFYQAATLLETVEMQLIQLSEAEQFAPSINRLLKSEITEILKKVERF 424
Query: 379 DAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRG- 437
+ D E+ + + N K I++ F I +++ ++ + + +R
Sbjct: 425 QVLCD---EFFDFDYEKEN----KEIRVRVD---FVPEI-QEISEKLEQMERVAEKLRKK 473
Query: 438 -GVRFQDDRLAT-ANTQYQAIQREYETHQQSIVEEVIGI-----SAGYTQTLNQLSDVLA 490
+F+ D L N+QY R ++SI ++ + I +G ++ +LSD+
Sbjct: 474 YSAKFECDNLKLDKNSQYGFYFRVTLKEEKSIRKKDVHILETTKGSGVKFSVGELSDIND 533
Query: 491 QF 492
+F
Sbjct: 534 EF 535
Score = 67 (28.6 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 2 KFYLFFFPQKSKTTIRFFNRVEFYCVHGEDAELIQR---KSNVVYLVKTMG-QKDKTLET 57
K L KS TI F+R E++ V+G+DA + KS+V T+ + ++
Sbjct: 11 KALLKILKSKSPNTIAIFSRGEYFSVYGDDATFVATNIFKSDVCVKTFTLSTDNSQQMKY 70
Query: 58 VLVNK 62
+ VN+
Sbjct: 71 ISVNR 75
>TIGR_CMR|DET_1219 [details] [associations]
symbol:DET_1219 "DNA mismatch repair protein MutS"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_181932.1 ProteinModelPortal:Q3Z767
STRING:Q3Z767 GeneID:3229472 KEGG:det:DET1219 PATRIC:21609473
OMA:HIHAKTL BioCyc:DETH243164:GJNF-1220-MONOMER Uniprot:Q3Z767
Length = 858
Score = 548 (198.0 bits), Expect = 1.0e-64, Sum P(3) = 1.0e-64
Identities = 139/416 (33%), Positives = 225/416 (54%)
Query: 339 GVSQLPKLISILESLVQNVEASNLNT--ILSSLQSLKMMDRKDAVMDKMKEYL-ESTARR 395
G+ LP+++ I+ + + S L ++ S + +M D+ ++ + +L + AR
Sbjct: 393 GLKPLPEMLDIVNEAINDDPPSTLGEGKVIRSGFNPEM-DKLCSLAGDARTFLSQMEARE 451
Query: 396 LNLVADKTIKLENSPQGFAYRITMKLNNSID--DRYTILDTVRGGVRFQDDRLAT-ANTQ 452
K++KL + + F Y I + N D Y T+ RF L N
Sbjct: 452 REQTGIKSLKLGYN-RVFGYYIEVSNANLADIPQNYIRKQTLVNAERFITPELKEYENLI 510
Query: 453 YQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRP 512
A +R E + + E+V+ G+ L + LA DVL +F A YVRP
Sbjct: 511 LNAKERLLEM-ETGLYEQVLNQLGGFYSALLSNAAALASLDVLSAF--AEVAVRNGYVRP 567
Query: 513 CMKPMGTGSLVLNQCRHPIVELQG-GV-SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIR 570
SLV+++ RHP+VE QG G S+ ND+ + + ++TGPNM GKSTY++
Sbjct: 568 LFH--SENSLVIHRGRHPMVE-QGLGYGSFAANDISLSAEDCQIIILTGPNMAGKSTYLK 624
Query: 571 SIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCT 630
+ V +AQIG +VP ++A + + D+IF+R+GA + G STFM+EM ETA+++ T
Sbjct: 625 QTALIVLMAQIGSYVPAETAELCLTDRIFSRIGAREDLSAGQSTFMVEMVETASILNTAT 684
Query: 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPF----TLFATHFHEIALLSRVIPT 686
SL+I+DE+GRGTST+DG +A ++ + H QP TLFATH+HE+ L+ +P
Sbjct: 685 SRSLLILDEIGRGTSTYDGLAIAQAVVEYI--HSQPSLHAKTLFATHYHELVELANYLPR 742
Query: 687 FRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
+N ++ E +V L+++ PG KSYG+H AK+AG P ++++A +++ E E
Sbjct: 743 VKNYNIAVSEDRGEVVFLHRIVPGGVDKSYGIHVAKLAGLPGWVIKRAYEVLTELE 798
Score = 158 (60.7 bits), Expect = 1.0e-64, Sum P(3) = 1.0e-64
Identities = 60/215 (27%), Positives = 108/215 (50%)
Query: 113 SNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRL 172
+ LEA I + +P E +LP K++ + + K ++ + + E D+ ++ RL
Sbjct: 157 NGLEAEINRLNPAEIILP-------KSQSLNLPLHLKATIS-KLDGYYFEADVARE--RL 206
Query: 173 VRFDDSELKNARLLPEMCLTTATHCLRSLINYLELMNNEDNMNQFS-IHSIDYSKYVHMS 231
++ E +N L A +L+NYLE + ++ Q + + S Y+ +
Sbjct: 207 LKH--FECQNLSAYGCENLPLAVSAAGALLNYLE-ETQKSSLKQLERLAAYTISDYMQID 263
Query: 232 SAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAA 291
S +S+L + G S + SLLG+LD+ +T G RLL +++ QPL + I +R +A
Sbjct: 264 SHTLSNLEIFRSSGGNSLK--GSLLGVLDQTKTAMGGRLLRKFLGQPLLRQEDIEKRLSA 321
Query: 292 VNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRK 326
V+ + AR +L + AL + DM+ +A RI +K
Sbjct: 322 VDYFFEESLARASLAK-ALGQIADMERIANRIRQK 355
Score = 51 (23.0 bits), Expect = 1.0e-64, Sum P(3) = 1.0e-64
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 16 IRFFNRVEFYCVHGEDAELIQRKSNVVYLVKTMGQ 50
I FF +FY EDA + R+ +V + MG+
Sbjct: 22 IVFFRLGDFYETFEEDARIAARELEIVLTSREMGK 56
>UNIPROTKB|Q7R8N0 [details] [associations]
symbol:PY07191 "DNA mismatch repair protein msh2"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01002579 RefSeq:XP_727998.1
ProteinModelPortal:Q7R8N0 STRING:Q7R8N0 GeneID:3800207
KEGG:pyo:PY07191 EuPathDB:PlasmoDB:PY07191 Uniprot:Q7R8N0
Length = 593
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 159/473 (33%), Positives = 256/473 (54%)
Query: 330 LKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQS-LKMM-DRKDAVMDKMKE 387
+K + + S+ +I + L + +E + + I S L+ + + K A+M K+K
Sbjct: 99 IKPLHDILNKFSKFLDMIEMTIDL-KEIEENKVYLISKHFDSELEQIYNEKSALMKKIKN 157
Query: 388 YLESTARRLNLVADK-----------TIKL-ENSPQGFAYRITMK---LNNSIDDRYTIL 432
+ E + +L +DK I+L E + GF +R+ K L +Y +
Sbjct: 158 HKEDVEK--DLFSDKHDRRNKKAMREDIRLIECNTNGFLFRVCKKDCPLVQQQKKKYLPI 215
Query: 433 DTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQF 492
+ F + L +Y+ Y T Q IV++ I + YT + + DV++
Sbjct: 216 RMNKNEFLFTTNTLKNLCREYEHCLSIYNTLQSEIVKKTICAVSTYTPVIEKFIDVVSTL 275
Query: 493 DVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVS-YIPNDVYFKSGE 551
DVLVSFS+ +P YVRP + G ++++ + RHP++ELQ +S +IPND++ +
Sbjct: 276 DVLVSFSVVCYNSPFTYVRPALVKNGE-NVIMKKSRHPLLELQHNISNFIPNDIHMNKNK 334
Query: 552 VSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRG 611
+VTGPNMGGKSTYIR I + LAQIG FVPCD I + QI RVGA+D Q +G
Sbjct: 335 SRLIIVTGPNMGGKSTYIRQIAIICILAQIGMFVPCDFCEIPIFTQIMCRVGASDFQLKG 394
Query: 612 ISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFA 671
ISTF+ EM E + +IK NSL+I+DELGRGTST++G G++ SI + + + + F LFA
Sbjct: 395 ISTFLSEMIEASAIIKNADNNSLIIVDELGRGTSTYEGLGISWSIGKYILDNIKCFCLFA 454
Query: 672 THFHEIALLSRVIPTFRNVQVSALEQEDN--LVLLYQVKPGSCVKSYGVHCAKMAGYPED 729
THFHE++ ++ N + + + N + LY++K G+ KSYGV+ A++A P+D
Sbjct: 455 THFHEMSNIAYQCEGVINRHIETIIDQKNKKICFLYEIKDGASNKSYGVNVAEIAKLPKD 514
Query: 730 MLEQARDLMKEYE-----Y------SLDTKTPSGDETNNREEEYFKTVQEGEY 771
++++A + ++E E Y ++DT + + ++ N Y K E Y
Sbjct: 515 VIQKAYEKVEELESAENKYYLKEKLNIDTSSSTNEKYKNNISNYVKIKDEINY 567
>UNIPROTKB|P61667 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000014 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00091 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 538 (194.4 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 120/338 (35%), Positives = 190/338 (56%)
Query: 408 NSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSI 467
N G+ +T ++I D Y T+ RF L + + + ++
Sbjct: 473 NKVFGYYIEVTKSNLSAIPDDYIRRQTLANAERFITPELKEYEEKVLGAEDRIVELEYAL 532
Query: 468 VEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQC 527
+++ A + + + +D LA DVL + +A YVRP + G ++V+
Sbjct: 533 FQDIRQRVAAQGERIARTADRLATLDVLAA--LADVAHDHRYVRPTVDE-GD-AIVVTGG 588
Query: 528 RHPIVE-LQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVP 586
RHP+VE L ++ NDV +GE ++TGPNM GKST++R + + V +AQ G FVP
Sbjct: 589 RHPVVEALNRSERFVANDVQLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQTGSFVP 648
Query: 587 CDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTST 646
D A+I VVD+IFTRVGA+D+ RG STFM+EM ETA +++ T SLV++DE+GRGTST
Sbjct: 649 ADEASIGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEIGRGTST 708
Query: 647 FDGFGMACSIARELASHRQ--PFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLL 704
FDG +A ++A L + TLFATH+HE+ L+ +N V+ E D ++ L
Sbjct: 709 FDGVSIAWAVAEYLHDTERCAAKTLFATHYHELTELAVTRNRVKNCNVAVKEWNDQVIFL 768
Query: 705 YQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
++ G SYG+ A++AG P++++E+A++++ E
Sbjct: 769 RKIVEGGASHSYGIQVARLAGLPQEVIERAKEILHNLE 806
Score = 157 (60.3 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 67/262 (25%), Positives = 115/262 (43%)
Query: 90 GVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNK 149
GVA +DL T F + E D + E V +P+E L+P + + +R
Sbjct: 139 GVAYLDLSTGDFRVTETDSADA-AWAEVACV--NPREILMPLSFRDGGAGS-----ERPD 190
Query: 150 VCMTGRKKNEFSEEDLMQD-VNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELM 208
+ GR + E + R+VR + + +A + + ++++YL+
Sbjct: 191 LA-AGRMLSYVDEWVYDAEYAERMVR-NHFGVASAEAAGCGSMDCGLRAVAAVLHYLQQT 248
Query: 209 NNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGH 268
D + + + +++ + + +L + G + SLLG+LDR T G
Sbjct: 249 QKGDVRHISYLQAYRTQEFLVLDESSRRNLELNATIGDGKRR--GSLLGLLDRTVTAMGG 306
Query: 269 RLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKA 328
R L QW+ PL ++ I ER AV LV + E R + AL G+ D++ L RI A
Sbjct: 307 RKLKQWINYPLVSIEKINERLDAVEELVADAEFRQGVRA-ALDGVYDLERLNGRISLASA 365
Query: 329 GLKDCYRVYEGVSQLPKLISIL 350
KD + + +LP LI++L
Sbjct: 366 SAKDLVALRASLVRLPSLIALL 387
>TIGR_CMR|GSU_1822 [details] [associations]
symbol:GSU_1822 "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000014 InterPro:IPR000432
InterPro:IPR005748 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00091 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 GO:GO:0004871
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 538 (194.4 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 120/338 (35%), Positives = 190/338 (56%)
Query: 408 NSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSI 467
N G+ +T ++I D Y T+ RF L + + + ++
Sbjct: 473 NKVFGYYIEVTKSNLSAIPDDYIRRQTLANAERFITPELKEYEEKVLGAEDRIVELEYAL 532
Query: 468 VEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQC 527
+++ A + + + +D LA DVL + +A YVRP + G ++V+
Sbjct: 533 FQDIRQRVAAQGERIARTADRLATLDVLAA--LADVAHDHRYVRPTVDE-GD-AIVVTGG 588
Query: 528 RHPIVE-LQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVP 586
RHP+VE L ++ NDV +GE ++TGPNM GKST++R + + V +AQ G FVP
Sbjct: 589 RHPVVEALNRSERFVANDVQLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQTGSFVP 648
Query: 587 CDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTST 646
D A+I VVD+IFTRVGA+D+ RG STFM+EM ETA +++ T SLV++DE+GRGTST
Sbjct: 649 ADEASIGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEIGRGTST 708
Query: 647 FDGFGMACSIARELASHRQ--PFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLL 704
FDG +A ++A L + TLFATH+HE+ L+ +N V+ E D ++ L
Sbjct: 709 FDGVSIAWAVAEYLHDTERCAAKTLFATHYHELTELAVTRNRVKNCNVAVKEWNDQVIFL 768
Query: 705 YQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
++ G SYG+ A++AG P++++E+A++++ E
Sbjct: 769 RKIVEGGASHSYGIQVARLAGLPQEVIERAKEILHNLE 806
Score = 157 (60.3 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 67/262 (25%), Positives = 115/262 (43%)
Query: 90 GVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNK 149
GVA +DL T F + E D + E V +P+E L+P + + +R
Sbjct: 139 GVAYLDLSTGDFRVTETDSADA-AWAEVACV--NPREILMPLSFRDGGAGS-----ERPD 190
Query: 150 VCMTGRKKNEFSEEDLMQD-VNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELM 208
+ GR + E + R+VR + + +A + + ++++YL+
Sbjct: 191 LA-AGRMLSYVDEWVYDAEYAERMVR-NHFGVASAEAAGCGSMDCGLRAVAAVLHYLQQT 248
Query: 209 NNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGH 268
D + + + +++ + + +L + G + SLLG+LDR T G
Sbjct: 249 QKGDVRHISYLQAYRTQEFLVLDESSRRNLELNATIGDGKRR--GSLLGLLDRTVTAMGG 306
Query: 269 RLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKA 328
R L QW+ PL ++ I ER AV LV + E R + AL G+ D++ L RI A
Sbjct: 307 RKLKQWINYPLVSIEKINERLDAVEELVADAEFRQGVRA-ALDGVYDLERLNGRISLASA 365
Query: 329 GLKDCYRVYEGVSQLPKLISIL 350
KD + + +LP LI++L
Sbjct: 366 SAKDLVALRASLVRLPSLIALL 387
>UNIPROTKB|P74926 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243274 "Thermotoga maritima MSB8" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE000512 GenomeReviews:AE000512_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 EMBL:U71155 PIR:C72219 RefSeq:NP_229518.1
ProteinModelPortal:P74926 GeneID:897879 KEGG:tma:TM1719
PATRIC:23938414 Uniprot:P74926
Length = 793
Score = 594 (214.2 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 176/577 (30%), Positives = 286/577 (49%)
Query: 194 ATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYD 253
A L +LI Y++ +++N I Y+ + SA + +L ++P G +D
Sbjct: 216 ALKALAALIKYVKYTMIAEDLNLKPPLLISQRDYMILDSATVENLSLIP--GDRGKNLFD 273
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGL 313
+L+ TP G RLL +W+ PL D I ER AV LVN+ + + L +
Sbjct: 274 ----VLNNTETPMGARLLKKWILHPLVDRKQIEERLKAVERLVNDRVSLEEMRNL-LSNV 328
Query: 314 PDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISIL------------ESLVQNVEASN 361
D++ + R+ ++ +D + E + +PKL +L E LV + +
Sbjct: 329 RDVERIVSRVEYNRSVPRDLVALRETLEIIPKLNEVLSTFGVFKKLAFPEGLVDLLRKAI 388
Query: 362 LNTILSSLQSLKMMDRK-DAVMDKMKEYLESTARRLNLVADKTI------KLE-NSPQGF 413
+ + S K++ R + +D+ ++ LE RL +K KL Q F
Sbjct: 389 EDDPVGSPGEGKVIKRGFSSELDEYRDLLEHAEERLKEFEEKERERTGIQKLRVGYNQVF 448
Query: 414 AYRITM-KLN-NSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEV 471
Y I + K N + I D Y T+ RF L T+ A + E ++ + + V
Sbjct: 449 GYYIEVTKANLDKIPDDYERKQTLVNSERFITPELKEFETKIMAAKERIEELEKELFKSV 508
Query: 472 IGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPI 531
+ + L ++S+ LA+ D L + +A Y +P L + RHP+
Sbjct: 509 CEEVKKHKEVLLEISEDLAKIDALST--LAYDAIMYNYTKPVFSE---DRLEIKGGRHPV 563
Query: 532 VELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSAT 591
VE + +++ ND+Y + E F ++TGPNM GKST+IR +G+ +AQIG FVP A
Sbjct: 564 VE-RFTQNFVENDIYMDN-EKRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQKAI 621
Query: 592 ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFG 651
+ V D+IFTR+GA D G STF++EM E A ++ K T SLV++DE+GRGTST DG
Sbjct: 622 LPVFDRIFTRMGARDDLAGGRSTFLVEMNEMALILLKSTNKSLVLLDEVGRGTSTQDGVS 681
Query: 652 MACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGS 711
+A +I+ EL R LFATHF E+ L + P +N + E+ N++ ++V G
Sbjct: 682 IAWAISEELIK-RGCKVLFATHFTELTELEKHFPQVQNKTILVKEEGKNVIFTHKVVDGV 740
Query: 712 CVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTK 748
+SYG+ AK+AG P+ ++ +A +++ E + +TK
Sbjct: 741 ADRSYGIEVAKIAGIPDRVINRAYEIL-ERNFKNNTK 776
Score = 48 (22.0 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 10 QKSKTTIRFFNRVEFYCVHGEDAELIQRKSNVV 42
++ K +I F +FY EDA+++ + N+V
Sbjct: 15 EQYKDSILLFRLGDFYEAFFEDAKIVSKVLNIV 47
>TIGR_CMR|CHY_1397 [details] [associations]
symbol:CHY_1397 "DNA mismatch repair protein HexA"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006298 GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
OMA:HYFELTV KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_360229.1 ProteinModelPortal:Q3ACA5
STRING:Q3ACA5 GeneID:3728668 KEGG:chy:CHY_1397 PATRIC:21275925
BioCyc:CHYD246194:GJCN-1396-MONOMER Uniprot:Q3ACA5
Length = 841
Score = 519 (187.8 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 115/343 (33%), Positives = 187/343 (54%)
Query: 402 KTIKLE-NSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREY 460
K++K+ N G+ +T + + Y T+ RF + L +
Sbjct: 445 KSLKVNYNKVFGYFIEVTKANLHLVPADYQRKQTMVNAERFITEELKHYENLILGASEKL 504
Query: 461 ETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTG 520
+ + E+ Y + L + + +A D L+S ++A+ + RP +
Sbjct: 505 ANLEYELFCEIRSEILKYQEDLKRAASAVALLDFLISLAVAAI--EYDFTRPVITAEPV- 561
Query: 521 SLVLNQCRHPIVELQ-GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA 579
L + RHP+VE G +++PND+Y + E S L+TGPNM GKSTY+R + V LA
Sbjct: 562 -LEIKNGRHPVVEKSVGRANFVPNDLYLDTKENSLLLITGPNMAGKSTYMRQAALIVILA 620
Query: 580 QIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDE 639
QIG FVP + A + +VD+I TR+GA D +G STFM+EM E +++ T SL+++DE
Sbjct: 621 QIGSFVPAEYARVGLVDKILTRIGATDDLAKGQSTFMVEMIECNNILRNATSRSLILLDE 680
Query: 640 LGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQED 699
+GRGTST+DG +A +I + + TLF+TH+HE+ L IP +N V E+ +
Sbjct: 681 VGRGTSTYDGISIAEAIIEYIQKKIKARTLFSTHYHELTGLEGEIPGVKNFTVLVQEKGE 740
Query: 700 NLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
+ L++V PG KSYG++ AK+AG P +++E+A +++ +E
Sbjct: 741 EVKFLHKVVPGKTDKSYGIYVAKLAGLPREVVERAYEILARFE 783
Score = 169 (64.5 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 56/189 (29%), Positives = 94/189 (49%)
Query: 157 KNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELMNNE--DNM 214
KN F +D+ VN L + E++ A PE + + LI+YL+ +
Sbjct: 180 KNNFLLKDITGIVNYLEKLPAEEIEIAFKGPE----ASKEAYKILISYLKRIEPAVLSIF 235
Query: 215 NQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQW 274
Q + ID Y++ + +L +L + S+ SLLGI+D +T G R L +
Sbjct: 236 GQPEFYQID--SYLYFDESTRKNLEILRNREDNSS----SLLGIIDFTQTAMGARKLKEE 289
Query: 275 MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCY 334
+ +PL +L AI +R AV ILVN+ E R NL E L+ L D++ L++++ KD
Sbjct: 290 LTKPLLNLKAIADRLDAVEILVNDYELRENLREN-LKNLYDLERLSIKLVCGTINPKDLI 348
Query: 335 RVYEGVSQL 343
++ + + Q+
Sbjct: 349 KIKQSLPQI 357
Score = 42 (19.8 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 26/96 (27%), Positives = 41/96 (42%)
Query: 342 QLPKLISILESLVQNVEA-SNLNTILSSLQSLKMMDRKDAVMD--KMKEYLESTARRLNL 398
Q+ + ES +N+E N SSL L ++D M K+KE L L
Sbjct: 242 QIDSYLYFDESTRKNLEILRNREDNSSSL--LGIIDFTQTAMGARKLKEELTKPLLNLKA 299
Query: 399 VADKTIKLENSPQGFAYRITMK--LNNSID-DRYTI 431
+AD+ +E + R ++ L N D +R +I
Sbjct: 300 IADRLDAVEILVNDYELRENLRENLKNLYDLERLSI 335
Score = 40 (19.1 bits), Expect = 5.4e-47, Sum P(2) = 5.4e-47
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 136 DNKNKIVTILDRNKVCMTGRKKNE 159
DN + ++ I+D + M RK E
Sbjct: 265 DNSSSLLGIIDFTQTAMGARKLKE 288
>UNIPROTKB|A9WFZ9 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:324602 "Chloroflexus aurantiacus J-10-fl" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:CP000909 GenomeReviews:CP000909_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:YP_001636542.1 ProteinModelPortal:A9WFZ9
STRING:A9WFZ9 GeneID:5827426 KEGG:cau:Caur_2954 PATRIC:21417221
ProtClustDB:CLSK2477234 BioCyc:CAUR324602:GIXU-3001-MONOMER
Uniprot:A9WFZ9
Length = 966
Score = 514 (186.0 bits), Expect = 2.3e-60, Sum P(3) = 2.3e-60
Identities = 103/265 (38%), Positives = 163/265 (61%)
Query: 489 LAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFK 548
+A+ D L + +A YV+P ++ L + Q RHP+VE +I ND+
Sbjct: 643 VARIDALAA--LAEVAVRGRYVQPRLRTDRV--LRIKQGRHPVVERTLSEPFIGNDIDLD 698
Query: 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQ 608
+ ++TGPNM GKST++R + + +AQIG FVP D A I +VD+IFTR+GA D
Sbjct: 699 GEQAQILIITGPNMAGKSTFLRQVALITLMAQIGSFVPADEAEIGLVDRIFTRIGAQDDI 758
Query: 609 YRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPF- 667
G STFM+EM ETA ++ + T SL+I+DE+GRGTST+DG +A ++ + H +
Sbjct: 759 ATGQSTFMVEMTETAALLMQSTPRSLIILDEVGRGTSTYDGMAIARAVVEYIHDHPRLGC 818
Query: 668 -TLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGY 726
TLFATH+HE+ L R +P RN ++A+E++ +V L++++PG +SYG+H A++AG
Sbjct: 819 RTLFATHYHELIALERELPRVRNYHMAAVERDGRVVFLHELRPGGADRSYGIHVAELAGI 878
Query: 727 PEDMLEQARDLMKEYEYSLDTKTPS 751
P +++ +A L+ + E +P+
Sbjct: 879 PPEVIRRASALLADLEGQRPPSSPA 903
Score = 151 (58.2 bits), Expect = 2.3e-60, Sum P(3) = 2.3e-60
Identities = 46/171 (26%), Positives = 82/171 (47%)
Query: 194 ATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYD 253
AT +L+ Y ++ + ++ Y+ + +L +L G A+
Sbjct: 301 ATRAAGALLQYAQVTQRQRVSQLRALRVYHTGAYMLLDPQTRRNLELLESGGRQGAKA-- 358
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGL 313
SL+ +LDR T G RLL +W+ QPL ++ + R AV LV T AR+ + AL L
Sbjct: 359 SLIAVLDRTCTAMGARLLRRWITQPLIVIEPLQVRQHAVARLVAETMARLEVRS-ALADL 417
Query: 314 PDMQSLAMRI--GRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNL 362
PDM+ RI G A +D ++ + +LP + +++L+ ++ A+ +
Sbjct: 418 PDMERALNRIAQGITVATPRDMTQLRAALRKLPAVAQAVQALLPDLLAAEM 468
Score = 67 (28.6 bits), Expect = 2.3e-60, Sum P(3) = 2.3e-60
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLP 130
VG+A DL T +F E D L+A + + SP E L+P
Sbjct: 168 VGLAYADLSTGEFAAAEFTDARALMQLQAELARLSPAEVLVP 209
Score = 43 (20.2 bits), Expect = 3.3e-08, Sum P(3) = 3.3e-08
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 721 AKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETNNREEEYFKTVQEG 769
A+M G P + + D++ E +LD P+ ++N Y + +EG
Sbjct: 466 AEMPGEPPLVFDVCADVLDLLERALDDDPPALLGSSN----YLRAAEEG 510
>TIGR_CMR|VC_0535 [details] [associations]
symbol:VC_0535 "DNA mismatch repair protein MutS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD PIR:B82312 RefSeq:NP_230186.1 ProteinModelPortal:Q9KUI6
SMR:Q9KUI6 DNASU:2615204 GeneID:2615204 KEGG:vch:VC0535
PATRIC:20080174 Uniprot:Q9KUI6
Length = 862
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 190/701 (27%), Positives = 338/701 (48%)
Query: 90 GVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNK 149
G A +D+ + +F + E P + + A + + SP+E L P ++ + ++ N+
Sbjct: 149 GYATMDITSGRFQLSE-PQTE--EEMAAELQRTSPRELLFPEDF---SPVHLMASRQGNR 202
Query: 150 VCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELMN 209
R EF + Q +N+ +F +L + A CL I Y++
Sbjct: 203 ----RRPIWEFELDTAKQQLNQ--QFGTRDLVGFGVEQAKLGLCAAGCL---IQYVKDTQ 253
Query: 210 NEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHR 269
+ S+ + V + +A +L + + + T ++L +LD C TP G R
Sbjct: 254 RTALPHIRSLTWDRQDQSVILDAATRRNLELTH---NLAGGTDNTLAEVLDHCATPMGSR 310
Query: 270 LLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAG 329
+L +W+ QP++D + +R A+ L T LH L+ + D++ + R+ + A
Sbjct: 311 MLKRWIHQPMRDNATLNQRLDAITEL-KETALYGELHP-VLKQIGDIERILARLALRSAR 368
Query: 330 LKDCYRVYEGVSQLPKLISILESLVQ------NVEASNLNTILSSLQ-SLK--------- 373
+D R+ + QLP+L S++ L Q A ++ + L+ ++K
Sbjct: 369 PRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAIKENPPVVIRD 428
Query: 374 ---MMDRKDAVMDKMKEYLESTARRLN-LVADK-------TIKLE-NSPQGFAYRITMKL 421
+ D A +D+ ++ L L A++ T+K+ N+ GF +++
Sbjct: 429 GGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQVSRGQ 488
Query: 422 NNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQT 481
++ + Y T++ R+ + L + + ++ + EE+ + + +
Sbjct: 489 SHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMPHLEQ 548
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L QL+ +AQ DVL + +A Y RP + + + + RHP+VE +I
Sbjct: 549 LQQLAASVAQLDVLQN--LAERAENLEYCRPTL--VQEAGIHIQGGRHPVVERVMNEPFI 604
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
N + + ++TGPNMGGKSTY+R + +A IG +VP +SA+I +D+IFTR
Sbjct: 605 ANPIELNP-QRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTR 663
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA 661
+GA+D G STFM+EM ETA ++ T NSLV++DE+GRGTST+DG +A + A LA
Sbjct: 664 IGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLA 723
Query: 662 SHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCA 721
TLFATH+ E+ L V+P NV + A+E D + ++ V+ G+ KSYG+ A
Sbjct: 724 KEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHAVQEGAASKSYGLAVA 783
Query: 722 KMAGYPEDMLEQARDLMKEYEY----SLDTKTPSGDETNNR 758
+AG P+ +++ AR +++ E +T+ PS + N+
Sbjct: 784 GLAGVPKPVIKNARAKLQQLELLSSQPAETRKPSRVDIANQ 824
>DICTYBASE|DDB_G0268614 [details] [associations]
symbol:msh6 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0032301 "MutSalpha
complex" evidence=ISS;IBA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0268614
GO:GO:0005524 GO:GO:0009411 GenomeReviews:CM000150_GR GO:GO:0003684
EMBL:AAFI02000003 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 RefSeq:XP_647085.1 STRING:Q55GU9 PRIDE:Q55GU9
EnsemblProtists:DDB0229918 GeneID:8615889 KEGG:ddi:DDB_G0268614
ProtClustDB:CLSZ2497299 Uniprot:Q55GU9
Length = 1260
Score = 482 (174.7 bits), Expect = 5.9e-60, Sum P(3) = 5.9e-60
Identities = 120/338 (35%), Positives = 182/338 (53%)
Query: 460 YETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGT 519
YE + ++++++ A Y L+Q D L+S S + RP
Sbjct: 925 YEVLSKEVLKKILSNFAIYFNHFQIAITKLSQLDCLLSLYKVSFQSSIQMCRPLFVSSDQ 984
Query: 520 -GSLVLNQCRHPIVELQGGVSYIPNDVYF--KSGEVSFNLVTGPNMGGKSTYIRSIGVSV 576
G + + RHP + + G +IPND+ ++ S ++TGPNMGGKST +R + V
Sbjct: 985 RGFIDVKDMRHPCIYSKSGDDFIPNDISLNTENNPPSLMVLTGPNMGGKSTLLRQSCILV 1044
Query: 577 FLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVI 636
+AQ+GC+V S +S+VD+IFTR+GA D+ G STFM+E+ ET+ V+K T+ SLVI
Sbjct: 1045 IMAQMGCYVSASSCEMSIVDRIFTRLGANDNILAGQSTFMVELAETSAVLKYATKRSLVI 1104
Query: 637 IDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALE 696
+DELGRGTSTFDG+ +A S+ LA+ Q +FATH+ +A V ++
Sbjct: 1105 LDELGRGTSTFDGYSIAYSVLNYLATKVQSMCIFATHYQSLAYEPTVRDLISTAYMTCHV 1164
Query: 697 QED--NLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDE 754
E+ ++ LY++ G C SYG+H A MAG P +++ +A + K + D+ S
Sbjct: 1165 DEEAKKVIFLYKLASGVCPNSYGLHVASMAGLPREIITKAEE--KSTQMEKDSVLVSFIH 1222
Query: 755 -TNNREEEYFKTVQEGEYQMFDFLQQCLSLSKQ-KDTN 790
T +R + K VQ Y+ D L Q + LS KD N
Sbjct: 1223 GTISRSKLVEKIVQS--YKQKD-LNQLIQLSNTLKDLN 1257
Score = 213 (80.0 bits), Expect = 5.9e-60, Sum P(3) = 5.9e-60
Identities = 68/281 (24%), Positives = 126/281 (44%)
Query: 90 GVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVT-ILDRN 148
GV VD+ +FY+ I DDD E +++Q PKE + + I+ +L
Sbjct: 504 GVCFVDVSIGEFYLCTIQDDDNRMQFETLLLQMMPKEIVYEKGATSPKTISIMKRVLSTV 563
Query: 149 KVCMTGRKKNEFSEE-DLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLEL 207
K M R E+ + D M+ + +L E E + C+ L++ +++
Sbjct: 564 KPVMNARLSLEYWDPTDTMERITQLCGGKTPETLCQMKNEEYLMGALGGCISYLMD-IKI 622
Query: 208 MNNEDNMNQFS-IHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQ 266
N+ +F + +D + + + +L + ST T +L ++DRC T
Sbjct: 623 GNSVVEQARFKRFNPLDIGNSMILDGQCLVNLEIF--NNSTDGSTEGTLFKLMDRCTTAF 680
Query: 267 GHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRK 326
G R+ QW+ +PL + +AIV+R A+ L ++ E + L LPD++ + RI +
Sbjct: 681 GKRMFRQWICRPLANKNAIVDRQKAIEFLRDSPETLQKVTAI-LNKLPDLERMIARIRAQ 739
Query: 327 KAGLKDCYRVYEGVSQL-PKLISILESLVQNVEASNLNTIL 366
+ + D V + KL+ +L+ Q +E+ +L + L
Sbjct: 740 TSKISDLISVLNHFDNIHSKLLELLDEAEQ-IESIHLRSCL 779
Score = 47 (21.6 bits), Expect = 5.9e-60, Sum P(3) = 5.9e-60
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 7 FFPQKSKT--TIRFFNRVEFYCVHGEDAEL 34
F+ KSK T+ FF + +FY ++ DA++
Sbjct: 367 FWDIKSKNYDTVVFFKKGKFYELYESDADI 396
Score = 37 (18.1 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 17/74 (22%), Positives = 31/74 (41%)
Query: 77 EDKTLETVLTN--TVGVAIVD---LDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPA 131
+D ++ LT+ T G + + D Y+ I +++Y V S E L
Sbjct: 460 KDSIIQRELTSILTAGTLLDEQMITDQTSTYLMAIKENEYDKQYGVCFVDVSIGEFYLCT 519
Query: 132 EYLNDNKNKIVTIL 145
+DN+ + T+L
Sbjct: 520 IQDDDNRMQFETLL 533
>UNIPROTKB|Q7S4J6 [details] [associations]
symbol:NCU08135 "DNA mismatch repair protein msh6"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
PIRSF:PIRSF037677 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
EMBL:AABX02000052 RefSeq:XP_959678.2 UniGene:Ncr.20761
ProteinModelPortal:Q7S4J6 STRING:Q7S4J6
EnsemblFungi:EFNCRT00000008326 GeneID:3875816 KEGG:ncr:NCU08135
Uniprot:Q7S4J6
Length = 1237
Score = 497 (180.0 bits), Expect = 4.5e-59, Sum P(3) = 4.5e-59
Identities = 122/377 (32%), Positives = 198/377 (52%)
Query: 376 DRKDAVMDKMK-EYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDT 434
DR A +D++K E E R+ + KT K + + Y+I + + ++ +
Sbjct: 815 DRSQAELDRIKGELQELLERQKTALRCKTAKFTDVGKE-VYQIEVPKTVKVPPKWRQMSA 873
Query: 435 VRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIG-----ISAGYTQTLNQLSDVL 489
R+ L + +Q ETH Q IV+EV Y +T Q ++
Sbjct: 874 TSAVKRYYFKELEDL---VRELQEAEETHSQ-IVKEVASRFFKRFDLDY-ETWLQAIRII 928
Query: 490 AQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKS 549
+Q D L+S + AS+ +P RP + N+ RHP + L +IPND+
Sbjct: 929 SQLDCLISLAKASSALGQPCCRPVFVNDERTVVEFNELRHPCM-LNTVDDFIPNDIKLGG 987
Query: 550 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQY 609
E + NL+TG N GKST +R ++V +AQIGC+VP SA ++ VD+I +R+GA D+ +
Sbjct: 988 DEANINLLTGANAAGKSTILRMSCIAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIF 1047
Query: 610 RGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTL 669
STF +E+ ET ++ + T SLVI+DELGRGTS++DG +A ++ +ASH
Sbjct: 1048 AAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVASHIGCVGF 1107
Query: 670 FATHFHEIALLSRVIPTFR--NVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYP 727
FATH+H +A P R +Q++ E+ + LY+++ G S+G+HCA M G P
Sbjct: 1108 FATHYHSLATEFENHPEIRARRMQIAVDEENKRITFLYKLEDGVAEGSFGMHCAAMCGIP 1167
Query: 728 EDMLEQARDLMKEYEYS 744
+ ++ ++ KE+E++
Sbjct: 1168 DKVIRRSEVAAKEWEHT 1184
Score = 196 (74.1 bits), Expect = 4.5e-59, Sum P(3) = 4.5e-59
Identities = 89/347 (25%), Positives = 153/347 (44%)
Query: 59 LVNKSNLSCFSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAI 118
LV+ S L + + C ++ ++ G+A VD T +F++ E DD + E
Sbjct: 466 LVDGSMLQDDNAVYCAAIKESVVDD--KPAFGIAFVDAATGQFFISEFEDDVDLTKFETF 523
Query: 119 IVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTG----RKKNEFSEEDLMQ-DVNRLV 173
+ Q SP+E +L +L+ K + IL N T + EF + D+ + +++
Sbjct: 524 VAQTSPRELILEKSHLS---TKALRILKNNTSPTTIWNYLKPGTEFWDADVARRELDCSG 580
Query: 174 RF----DDSELKNARLLPEMCLTTATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVH 229
F E+ A+L L +L YL ++ E N+ S + + +H
Sbjct: 581 YFVSGEGQEEVWPAKLKEARDKDLLMSALGALTQYLRMLKLERNL--LSQGNFAWYNPIH 638
Query: 230 MSSAVM---SSLHVLPQQGSTS-AQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAI 285
+ ++ SL L +T+ +L +L+RC TP G RL QW+ PL ++ +
Sbjct: 639 RNGTLILDGQSLINLEIFANTANGGPEGTLFHLLNRCITPFGKRLFRQWVCHPLCNIQKL 698
Query: 286 VERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPK 345
ER AV++L N+ + + +PD++ L RI +D +V EG Q+ +
Sbjct: 699 NERLDAVDML-NDDHSLREQFSSQMSKMPDLERLISRIHAGACRPEDFVKVLEGFEQIDR 757
Query: 346 LISILES------LVQNVEASNLNTILSSLQSLKM-MDRKDAVMDKM 385
+ +LES LV + AS + + L K DRK A DK+
Sbjct: 758 TMELLESYGGGNGLVDRLIAS-MPDLKEPLGYWKTAFDRKRARDDKL 803
Score = 38 (18.4 bits), Expect = 4.5e-59, Sum P(3) = 4.5e-59
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 15 TIRFFNRVEFYCVHGEDAEL 34
T+ FF + +FY ++ DA +
Sbjct: 367 TVVFFKKGKFYELYENDATI 386
>ASPGD|ASPL0000041666 [details] [associations]
symbol:mshA species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 478 (173.3 bits), Expect = 5.0e-57, Sum P(3) = 5.0e-57
Identities = 116/367 (31%), Positives = 193/367 (52%)
Query: 385 MKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDD 444
+ + L+ T R L A +N + + + +K+ N I + + + R+
Sbjct: 772 LDDLLKRTRRELGSTA--ICYRDNGKEIYQMEVPIKVKN-IPRNWDQMSATKQVKRYYFP 828
Query: 445 RLATANTQYQAIQREYETHQQSIVEEV-----IGISAGYTQTLNQLSDVLAQFDVLVSFS 499
L T + Q Q ETH Q IV+EV Y+ L+ + V++Q D L+S +
Sbjct: 829 ELRTTIRKLQEAQ---ETHSQ-IVKEVSKRFYARFDEHYSTWLSAVR-VVSQLDCLISLA 883
Query: 500 IASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTG 559
AS+ +P RP L + RHP + + +IPND+ + +L+TG
Sbjct: 884 KASSSLGEPSCRPTFVEDERSVLEFEELRHPCL-ISSVDDFIPNDIQLGGSGPNIDLLTG 942
Query: 560 PNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEM 619
N GKST +R V+V +AQ+GC++PC SA ++ VD+I +R+GA D+ + STF +E+
Sbjct: 943 ANAAGKSTLLRMTCVAVIMAQVGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTFFVEL 1002
Query: 620 KETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL 679
ET ++ + T SLVI+DELGRGTS++DG +A ++ +A+H FATH+H +A
Sbjct: 1003 SETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAA 1062
Query: 680 LSRVIPTFR--NVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDL 737
P + +++ E E + LY+++ G S+G+HCA M G P ++E+A
Sbjct: 1063 EFENHPEIKPKRMKIHVDENERRVTFLYKLEDGVAEGSFGMHCAAMCGIPNKVIERAEVA 1122
Query: 738 MKEYEYS 744
K++E++
Sbjct: 1123 AKQWEHT 1129
Score = 193 (73.0 bits), Expect = 5.0e-57, Sum P(3) = 5.0e-57
Identities = 86/338 (25%), Positives = 146/338 (43%)
Query: 29 GEDAELIQRKSNVVYLVKTMGQKDKTLETVLVNKSNLSCFSHILCVISEDKTLETVLTNT 88
G++ ++I+R+ + V T G TL + + ++S F CV ++ +E +
Sbjct: 390 GKEEKIIRRE---LACVLTAG----TLVEGAMLQDDMSTF----CVAIKEAIIENL--PA 436
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRN 148
G+A VD T +F++ E DD + E + Q P+E LL ++ K + IL N
Sbjct: 437 FGIAFVDTATGQFFLTEFVDDVDMTKFETFVAQTRPQELLLEKSTVSQ---KALRILKNN 493
Query: 149 KVCMTG----RKKNEFSEEDL-MQDVNRLVRFDDSELKNARLLPEMCLTT-----ATHCL 198
T + EF E D+ +++++ F + N PE
Sbjct: 494 TGPTTIWNYLKPGKEFWEADITVRELDASEYFVSQDNDNIHAWPEALRQARDKELVMSAF 553
Query: 199 RSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYD----- 253
+L+ YL L+ E ++ S Y SS V+ ++ + A ++D
Sbjct: 554 GALVQYLRLLKLERDLITIGNFSW-YDPIKKASSLVLDGQTLINME--IFANSFDGGVDG 610
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGL 313
+L +L+RC TP G R+ QW+ PL D I R AV+ L ++ R L +
Sbjct: 611 TLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRINARLDAVDALNADSSVRDQFASQ-LTKM 669
Query: 314 PDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILE 351
PD++ L RI +D RV EG Q+ +S+L+
Sbjct: 670 PDLERLISRIHAANCRAQDFVRVLEGFEQIEYTMSLLK 707
Score = 42 (19.8 bits), Expect = 5.0e-57, Sum P(3) = 5.0e-57
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 10 QKSKTTIRFFNRVEFYCVHGEDAEL 34
QK T+ FF + +FY ++ DA +
Sbjct: 303 QKFWDTVVFFKKGKFYELYENDATI 327
>UNIPROTKB|Q5BCM2 [details] [associations]
symbol:AN1708.2 "Protein required for mismatch repair in
mitosis and meiosis (Eurofung)" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 478 (173.3 bits), Expect = 5.0e-57, Sum P(3) = 5.0e-57
Identities = 116/367 (31%), Positives = 193/367 (52%)
Query: 385 MKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDD 444
+ + L+ T R L A +N + + + +K+ N I + + + R+
Sbjct: 772 LDDLLKRTRRELGSTA--ICYRDNGKEIYQMEVPIKVKN-IPRNWDQMSATKQVKRYYFP 828
Query: 445 RLATANTQYQAIQREYETHQQSIVEEV-----IGISAGYTQTLNQLSDVLAQFDVLVSFS 499
L T + Q Q ETH Q IV+EV Y+ L+ + V++Q D L+S +
Sbjct: 829 ELRTTIRKLQEAQ---ETHSQ-IVKEVSKRFYARFDEHYSTWLSAVR-VVSQLDCLISLA 883
Query: 500 IASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTG 559
AS+ +P RP L + RHP + + +IPND+ + +L+TG
Sbjct: 884 KASSSLGEPSCRPTFVEDERSVLEFEELRHPCL-ISSVDDFIPNDIQLGGSGPNIDLLTG 942
Query: 560 PNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEM 619
N GKST +R V+V +AQ+GC++PC SA ++ VD+I +R+GA D+ + STF +E+
Sbjct: 943 ANAAGKSTLLRMTCVAVIMAQVGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTFFVEL 1002
Query: 620 KETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL 679
ET ++ + T SLVI+DELGRGTS++DG +A ++ +A+H FATH+H +A
Sbjct: 1003 SETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAA 1062
Query: 680 LSRVIPTFR--NVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDL 737
P + +++ E E + LY+++ G S+G+HCA M G P ++E+A
Sbjct: 1063 EFENHPEIKPKRMKIHVDENERRVTFLYKLEDGVAEGSFGMHCAAMCGIPNKVIERAEVA 1122
Query: 738 MKEYEYS 744
K++E++
Sbjct: 1123 AKQWEHT 1129
Score = 193 (73.0 bits), Expect = 5.0e-57, Sum P(3) = 5.0e-57
Identities = 86/338 (25%), Positives = 146/338 (43%)
Query: 29 GEDAELIQRKSNVVYLVKTMGQKDKTLETVLVNKSNLSCFSHILCVISEDKTLETVLTNT 88
G++ ++I+R+ + V T G TL + + ++S F CV ++ +E +
Sbjct: 390 GKEEKIIRRE---LACVLTAG----TLVEGAMLQDDMSTF----CVAIKEAIIENL--PA 436
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRN 148
G+A VD T +F++ E DD + E + Q P+E LL ++ K + IL N
Sbjct: 437 FGIAFVDTATGQFFLTEFVDDVDMTKFETFVAQTRPQELLLEKSTVSQ---KALRILKNN 493
Query: 149 KVCMTG----RKKNEFSEEDL-MQDVNRLVRFDDSELKNARLLPEMCLTT-----ATHCL 198
T + EF E D+ +++++ F + N PE
Sbjct: 494 TGPTTIWNYLKPGKEFWEADITVRELDASEYFVSQDNDNIHAWPEALRQARDKELVMSAF 553
Query: 199 RSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYD----- 253
+L+ YL L+ E ++ S Y SS V+ ++ + A ++D
Sbjct: 554 GALVQYLRLLKLERDLITIGNFSW-YDPIKKASSLVLDGQTLINME--IFANSFDGGVDG 610
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGL 313
+L +L+RC TP G R+ QW+ PL D I R AV+ L ++ R L +
Sbjct: 611 TLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRINARLDAVDALNADSSVRDQFASQ-LTKM 669
Query: 314 PDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILE 351
PD++ L RI +D RV EG Q+ +S+L+
Sbjct: 670 PDLERLISRIHAANCRAQDFVRVLEGFEQIEYTMSLLK 707
Score = 42 (19.8 bits), Expect = 5.0e-57, Sum P(3) = 5.0e-57
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 10 QKSKTTIRFFNRVEFYCVHGEDAEL 34
QK T+ FF + +FY ++ DA +
Sbjct: 303 QKFWDTVVFFKKGKFYELYENDATI 327
>UNIPROTKB|Q7NLT8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:251221 "Gloeobacter violaceus PCC 7421" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000045 GenomeReviews:BA000045_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_923979.1 ProteinModelPortal:Q7NLT8
GeneID:2599151 KEGG:gvi:gvip140 PATRIC:22041477
BioCyc:GVIO251221:GH9A-1085-MONOMER Uniprot:Q7NLT8
Length = 890
Score = 514 (186.0 bits), Expect = 6.4e-57, Sum P(3) = 6.4e-57
Identities = 115/297 (38%), Positives = 171/297 (57%)
Query: 450 NTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPY 509
N Q Q Q EY+ +I+ + G + L Q++ +A D L +A Y
Sbjct: 583 NAQQQTNQLEYDIF--NILRQEAG---RHVSALRQVARRVAALDALAG--LAEVAVYHDY 635
Query: 510 VRPCMKPMGTGSLV-LNQCRHPIVE--LQGGVSYIPNDVYFKS-GEVSFNLVTGPNMGGK 565
RP + G G V + RHP++E + G ++PND + E ++TGPNM GK
Sbjct: 636 CRPVL---GEGREVHIEAGRHPVIEQAIPAGF-FVPNDARMGAEAEPDLIILTGPNMSGK 691
Query: 566 STYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATV 625
S++IR + + LAQ+G FVP A + V D+IFTRVGA D G STFM+EM ETA +
Sbjct: 692 SSFIRQVALIQLLAQVGAFVPARGAVLGVADRIFTRVGAVDDLATGQSTFMVEMTETANI 751
Query: 626 IKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIP 685
+ T SLV++DE+GRGT+TFDG +A ++A LASH + T+FATH+HE+ L+ V+
Sbjct: 752 LNHATPRSLVLLDEIGRGTATFDGLAIAWAVAEYLASHIRCRTIFATHYHELNELASVVS 811
Query: 686 TFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
N QV+ E D +V L++V PG +SYG+ ++AG P ++ +AR ++ + E
Sbjct: 812 GVANYQVTVQELADRIVFLHRVTPGGADRSYGIEVGRLAGLPPSVVARARTVLAQVE 868
Score = 139 (54.0 bits), Expect = 6.4e-57, Sum P(3) = 6.4e-57
Identities = 54/174 (31%), Positives = 81/174 (46%)
Query: 219 IHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQP 278
I + S+Y+ + +L L Q AQ Y SLL LDR RT G R L +W+ QP
Sbjct: 322 IRTYTLSQYLILDHQTRRNLE-LTQTVRDGAQ-YGSLLWALDRTRTVMGGRALRRWLLQP 379
Query: 279 LKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYE 338
L D AI R +V L + R L L + D++ LA R G A +D + E
Sbjct: 380 LLDTRAIGRRQDSVAELYDEGLLRERLQRI-LESVYDLERLAGRCGSGTANARDLVALGE 438
Query: 339 GVSQLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLEST 392
+ +LP +L + V AS + L +LQS+ + + + +K++ L T
Sbjct: 439 SLLKLP-------ALAEAVAAST-SPYLKALQSIPV--ELERLGEKLRRTLVDT 482
Score = 42 (19.8 bits), Expect = 6.4e-57, Sum P(3) = 6.4e-57
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 23 EFYCVHGEDAELIQRKSNVVYLVKTMGQK 51
+FY DAE++ R+ +V + G K
Sbjct: 46 DFYETFLADAEIVSRELEIVLTGRQAGDK 74
>TIGR_CMR|SO_3431 [details] [associations]
symbol:SO_3431 "DNA mismatch repair protein MutS"
species:211586 "Shewanella oneidensis MR-1" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_718984.1
ProteinModelPortal:Q8EBR9 SMR:Q8EBR9 GeneID:1171106
KEGG:son:SO_3431 PATRIC:23526550 Uniprot:Q8EBR9
Length = 856
Score = 509 (184.2 bits), Expect = 1.0e-56, Sum P(2) = 1.0e-56
Identities = 124/382 (32%), Positives = 198/382 (51%)
Query: 375 MDRKDAVMDKMKEYL-ESTARRLNLVADKTIKLE-NSPQGFAYRITMKLNNSIDDRYTIL 432
+D + + +YL + AR T+K+ N G+ ++ +N + Y
Sbjct: 437 LDEWRGLSEGASDYLVQLEAREKERTGIATLKVGYNRVHGYYIEVSRLQSNQVPLNYQRR 496
Query: 433 DTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQF 492
T++ R+ L + + Q + ++ + +E+ + L + A+
Sbjct: 497 QTLKNMERYITPELKEYEEKVLSSQGKALALEKQLWDELFDLILPKLHELQDFARAAAEL 556
Query: 493 DVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEV 552
DVL +F A Y P + G + + RHP+VE +I N V + +
Sbjct: 557 DVLSNF--AERAETLGYTSPELSSE-IG-VKIEAGRHPVVERVSQTPFIANPVTLHN-QR 611
Query: 553 SFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGI 612
+VTGPNMGGKSTY+R + + +A IGCFVP + ATI +D+IFTR+GA+D G
Sbjct: 612 RMLIVTGPNMGGKSTYMRQVALITLMAHIGCFVPAERATIGPIDRIFTRIGASDDLASGR 671
Query: 613 STFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFAT 672
STFM+EM ETA ++ T SLV++DE+GRGTST+DG +A S A LA TLFAT
Sbjct: 672 STFMVEMTETANILHNATAQSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQVGAMTLFAT 731
Query: 673 HFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLE 732
H+ E+ L ++ NV + A+E ED + ++ V+ G+ KSYG+ A +AG P +++
Sbjct: 732 HYFELTQLPELMSGVYNVHLDAIEHEDTIAFMHAVQEGAASKSYGLQVAALAGVPARVIK 791
Query: 733 QARDLMKEYE---YSLD-TKTP 750
A+ + + E + ++ TKTP
Sbjct: 792 AAKHKLHQLESRDHQVEGTKTP 813
Score = 145 (56.1 bits), Expect = 1.0e-56, Sum P(2) = 1.0e-56
Identities = 67/278 (24%), Positives = 119/278 (42%)
Query: 77 EDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLND 136
+D L V VG LD I + + +LEA + + +P E L ++
Sbjct: 131 QDNLLAAVYQGKVGFGYATLDVSSGRF-VIAELETKESLEAELQRTNPVEILYSEDF--- 186
Query: 137 NKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLV-RFDDSELKNARLLPEMCLTTAT 195
+ +L K G+++ E D + L+ +F +L + A
Sbjct: 187 ---GALDLLHHFK----GKRRRPEWEFDYDTSIKLLLAQFGTKDLHGFGITDARLSLQAA 239
Query: 196 HCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSL 255
CL + + ++N +I + + + + +A +L L Q + S ++L
Sbjct: 240 GCLMQYVKDTQ-RTALPHIN--AITRFNQTDTIVLDAATRRNLE-LTQ--NLSGGRDNTL 293
Query: 256 LGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPD 315
+LD T G R+L +W+ QPL+D I+ R AVN L+ T +LHE L+ L D
Sbjct: 294 AAVLDNTATAMGSRMLQRWIHQPLRDHALILARQTAVNELLE-TAVHESLHEQ-LKALGD 351
Query: 316 MQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESL 353
++ + R+ + A +D R+ + +S LP+L L L
Sbjct: 352 IERIMARLALRTARPRDFARLRQALSLLPQLQLSLSQL 389
>TIGR_CMR|CBU_1056 [details] [associations]
symbol:CBU_1056 "DNA mismatch repair protein MutS"
species:227377 "Coxiella burnetii RSA 493" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_820057.2
ProteinModelPortal:Q83CQ2 SMR:Q83CQ2 PRIDE:Q83CQ2 GeneID:1208957
KEGG:cbu:CBU_1056 PATRIC:17930837
BioCyc:CBUR227377:GJ7S-1048-MONOMER Uniprot:Q83CQ2
Length = 859
Score = 508 (183.9 bits), Expect = 7.6e-56, Sum P(3) = 7.6e-56
Identities = 115/317 (36%), Positives = 184/317 (58%)
Query: 443 DDRLATANTQYQAIQRE-YETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIA 501
+D++ ++ ++ A ++E YE +++E++I L Q + +A DVL + +A
Sbjct: 518 EDKVLSSRSRALAREKELYEQLLDTLIEKLI--------PLQQCASAIANLDVLNT--LA 567
Query: 502 STCAPKPYVRP--CMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTG 559
+ P C P+ + + RHPIVE ++PND + ++TG
Sbjct: 568 ERADTLNFNAPQFCDYPI----IKIEAGRHPIVENVMTDPFMPNDTHLDEKRRML-IITG 622
Query: 560 PNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEM 619
PNMGGKSTY+R + LA IG FVP +A + +D+IFTR+GAAD G STFM+EM
Sbjct: 623 PNMGGKSTYMRQTALITLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEM 682
Query: 620 KETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL 679
ETA ++ TE SLV++DE+GRGTSTFDG +A + A LA+ + F LFATH+ E+
Sbjct: 683 TETAAILHNATEESLVLMDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTA 742
Query: 680 LSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMK 739
L+ + +NV + A+E E+ ++ L+ ++ G KSYG+ A++AG P +++ AR ++
Sbjct: 743 LASTLQAVKNVHLDAVEHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQHARQKLE 802
Query: 740 EYEYSL--DTKTPSGDE 754
E E + +T+ P +E
Sbjct: 803 ELENPVISETQQPQQNE 819
Score = 135 (52.6 bits), Expect = 7.6e-56, Sum P(3) = 7.6e-56
Identities = 47/192 (24%), Positives = 88/192 (45%)
Query: 193 TATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQ-QGSTSAQT 251
TA CL +NY + + SI + + + + + +L ++ QG +
Sbjct: 240 TAAGCLLQYVNYTQ---KSALPHIHSIQAEQNEEALFIDANTRRNLELITNLQG----EE 292
Query: 252 YDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALR 311
SL +LD TP G RLL +W+ +PL+D + +R AV+ L+ ++E LR
Sbjct: 293 VHSLAWLLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNYS-EIYEN-LR 350
Query: 312 GLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQS 371
+ D++ + RI + A +D ++ + + LP L L +L N + + L
Sbjct: 351 HIGDLERIVARIALRSARPRDLMQLRQALGVLPTLHQQLTNLPLNKQLQEIKNNLGLFDE 410
Query: 372 LKMMDRKDAVMD 383
L + +K A+++
Sbjct: 411 LFRLLKK-AIIE 421
Score = 41 (19.5 bits), Expect = 7.6e-56, Sum P(3) = 7.6e-56
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 90 GVAIVDLDTKKFYMGEIPDDD-YYSNLEAIIVQKSPKECLLPAE 132
G+A +D+ + +F + EI ++ ++ +E I P E L+ E
Sbjct: 151 GIATLDITSGRFLIQEIISENALFAEIERI----RPAELLISEE 190
>DICTYBASE|DDB_G0275999 [details] [associations]
symbol:msh1 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISS;IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0275999
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0006298 GO:GO:0008094 GO:GO:0043504
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
GO:GO:0032139 OMA:ITQTVRD RefSeq:XP_643371.1 STRING:Q552L1
EnsemblProtists:DDB0232360 GeneID:8620254 KEGG:ddi:DDB_G0275999
InParanoid:Q552L1 ProtClustDB:CLSZ2729174 Uniprot:Q552L1
Length = 898
Score = 480 (174.0 bits), Expect = 4.0e-55, Sum P(3) = 4.0e-55
Identities = 125/392 (31%), Positives = 199/392 (50%)
Query: 369 LQSLKMMDRK-DAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDD 427
L K++ R DA+++ E+ E+ +L + K K NS G+ I+ + I
Sbjct: 498 LDRYKLISRNSDALIN---EFRETYRNKLKIPKLKVNK--NSIIGYYIEISSSDRDKIPL 552
Query: 428 RYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSD 487
+ + T+ +RF+ L + + ++ + ++ + Y+ + Q+S
Sbjct: 553 NFIHIQTLLSVMRFKSSDLIILEDEINRAASKVLEYEIQLYYVLVDLVCKYSNEIKQVSS 612
Query: 488 VLAQFDVLVSFSIASTCAP--KPYVRPCMKPMGTGSLVLNQC-------------RHPIV 532
V+A D+ S + S KP + +V N RHP V
Sbjct: 613 VIANLDISTSLAKISKQRRYIKPILVNNNNNNNNNIVVDNDNNDNDRLILDIKDGRHPTV 672
Query: 533 ELQGGVSYIPNDVYFKSG--EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSA 590
E +I ND+ G + + L+TGPNMGGKST++R + + +AQ+G FVP A
Sbjct: 673 E-NSTTEFIGNDLQLNKGIDDANLWLITGPNMGGKSTFLRQNALIILMAQMGSFVPASYA 731
Query: 591 TISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGF 650
I +VD IF+RVG++D STFM+EM ETA+++KK T S VI+DE+GRGTST DG
Sbjct: 732 KIGIVDAIFSRVGSSDDLSNDKSTFMVEMVETASILKKATNRSFVIMDEVGRGTSTLDGI 791
Query: 651 GMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPG 710
+A S+ L + TLFATH+HE+ P + ++ E ED ++ +++ PG
Sbjct: 792 SIAQSVVEYLNQVNRCRTLFATHYHELTKNLDETPHIKCYCLAIQEDEDEILFTHKIVPG 851
Query: 711 SCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
KSYG+ CAKMAG P +LE+++ ++ E E
Sbjct: 852 MSNKSYGIFCAKMAGIPNSVLERSKSILFELE 883
Score = 151 (58.2 bits), Expect = 4.0e-55, Sum P(3) = 4.0e-55
Identities = 75/293 (25%), Positives = 125/293 (42%)
Query: 91 VAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKV 150
++ +D+ T F++ ++ S L I PKE L+PA LN N+ +I IL V
Sbjct: 177 ISWLDISTGDFFISSSTLENLSSELNRI----QPKEILIPAS-LNYNQ-QISKILKPYNV 230
Query: 151 CMTGRKKNEFSEEDLMQDVNRLVRFDDS-ELKNARLLPEMC---LTTATHCLRSLINY-L 205
M K+ ++ + N +++ E+ N E L +A L +I +
Sbjct: 231 SMENDLKSFNYKKKTFKIFNEAFNNNNNNEINNEYFENEFSNDELNSAGSILSYIIKTNI 290
Query: 206 ELMNNEDNMNQ--FSIH---SIDYSKYVHMSSAVMSSLHVLPQ-QGSTSAQTYDSLLGIL 259
+ NN DN + FS++ ID + + + M SL + QG SLL +
Sbjct: 291 GIGNNNDNSSNPLFSLNLPKRIDSHNSMFIDYSTMQSLEITKTYQGDKKG----SLLESI 346
Query: 260 DRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSL 319
D+ TPQG RLL ++ P +L I R + NN E + + G D++
Sbjct: 347 DKTITPQGGRLLFSRIQSPSLELKEINSRLNQLEFFYNNMELTNEVRSFLNAG-SDIERC 405
Query: 320 AMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSL 372
R+ K+G +D + + G S L + + ESL + +N S+ L
Sbjct: 406 IQRLKINKSGPRDLHTI--G-STLQSIFHLKESLQSKLLTMKINEQTESINQL 455
Score = 54 (24.1 bits), Expect = 4.0e-55, Sum P(3) = 4.0e-55
Identities = 17/74 (22%), Positives = 32/74 (43%)
Query: 8 FPQKSKTTIRFFNRVEFYCVHGEDAELIQRKSNVVYLVKTMGQKDKTLETVLVNKSNLSC 67
F +K I FF +FY + EDA++ + + G K++ E + + S
Sbjct: 7 FKKKYPNEILFFRLGDFYEMFDEDAKIASNLLGITLTSRKQG-KNRNREIPMCGVPSHSA 65
Query: 68 FSHILCVISEDKTL 81
HI ++ K++
Sbjct: 66 EIHIAKLVKLGKSV 79
>TAIR|locus:1005716529 [details] [associations]
symbol:MSH7 "AT3G24495" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP
catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
[GO:0006260 "DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0007067 "mitosis" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0034968 "histone
lysine methylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009411 GO:GO:0003684 EMBL:AB020746
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR015536 PANTHER:PTHR11361:SF31 EMBL:AJ007792
EMBL:AF193018 EMBL:AF009657 IPI:IPI00538811 RefSeq:NP_850630.1
UniGene:At.6244 ProteinModelPortal:Q9SMV7 SMR:Q9SMV7 STRING:Q9SMV7
PaxDb:Q9SMV7 PRIDE:Q9SMV7 EnsemblPlants:AT3G24495.1 GeneID:822040
KEGG:ath:AT3G24495 GeneFarm:5083 TAIR:At3g24495
HOGENOM:HOG000030287 InParanoid:Q9SMV7 OMA:ELDEWRM PhylomeDB:Q9SMV7
ProtClustDB:CLSN2680110 Genevestigator:Q9SMV7 GermOnline:AT3G24495
Uniprot:Q9SMV7
Length = 1109
Score = 456 (165.6 bits), Expect = 5.7e-55, Sum P(2) = 5.7e-55
Identities = 120/343 (34%), Positives = 184/343 (53%)
Query: 450 NTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLS--DVLAQFDVLVSFSIASTCAPK 507
N Q Q + E ++E I + +++ ++ +S DVL F + S S S P
Sbjct: 731 NYQNQDVTDENAETLTILIELFIERATQWSEVIHTISCLDVLRSFAIAASLSAGSMARPV 790
Query: 508 --PYVRPCMKPMGT-GSLVLNQ-CRHPIVELQGGVSYIPNDVYF-----KSGEVSFN--L 556
P + T G ++ Q HP G +PND+ SG + L
Sbjct: 791 IFPESEATDQNQKTKGPILKIQGLWHPFAVAADGQLPVPNDILLGEARRSSGSIHPRSLL 850
Query: 557 VTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFM 616
+TGPNMGGKST +R+ ++V AQ+GC+VPC+S IS+VD IFTR+GA+D G STF+
Sbjct: 851 LTGPNMGGKSTLLRATCLAVIFAQLGCYVPCESCEISLVDTIFTRLGASDRIMTGESTFL 910
Query: 617 MEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHE 676
+E ETA+V++ T++SLVI+DELGRGTSTFDG+ +A S+ R L Q LFATH+H
Sbjct: 911 VECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHLVEKVQCRMLFATHYHP 970
Query: 677 IA--LLSRVIPTFRNVQVSALEQED--------NLVLLYQVKPGSCVKSYGVHCAKMAGY 726
+ S T +++ + + D +LV LY++ G+C +SYG+ A MAG
Sbjct: 971 LTKEFASHPRVTSKHMACAFKSRSDYQPRGCDQDLVFLYRLTEGACPESYGLQVALMAGI 1030
Query: 727 PEDMLEQARDLMKEYEYSLDTKTPSGD---ETNNREEEYFKTV 766
P ++E A + + S+ S + E ++ E++ K++
Sbjct: 1031 PNQVVETASGAAQAMKRSIGENFKSSELRSEFSSLHEDWLKSL 1073
Score = 194 (73.4 bits), Expect = 5.7e-55, Sum P(2) = 5.7e-55
Identities = 88/324 (27%), Positives = 142/324 (43%)
Query: 70 HILCVISEDKTLETVLTNTV-GVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECL 128
H+L I E K +E +TV G A VD +F++G I DD + L A+++Q SPKE L
Sbjct: 389 HLLA-IKEIK-MELQKCSTVYGFAFVDCAALRFWVGSISDDASCAALGALLMQVSPKEVL 446
Query: 129 LPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSE-EDLMQD-----VNRLVRFD-----D 177
++ L+ K + K +TG + + +M D V ++ +
Sbjct: 447 YDSKGLSREAQKAL-----RKYTLTGSTAVQLAPVPQVMGDTDAAGVRNIIESNGYFKGS 501
Query: 178 SELKNARL--LPEMCLTTATHCLRSLINYLELMNNEDNMNQFSIHSID-YSKYVHMSSAV 234
SE N + L E C A L LIN+L + ED + I Y + +
Sbjct: 502 SESWNCAVDGLNE-C-DVALSALGELINHLSRLKLEDVLKHGDIFPYQVYRGCLRIDGQT 559
Query: 235 MSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNI 294
M +L + S +L LD C +P G RLL W+ PLKD+++I +R V
Sbjct: 560 MVNLEIF--NNSCDGGPSGTLYKYLDNCVSPTGKRLLRNWICHPLKDVESINKRLDVVEE 617
Query: 295 LVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYE---GVSQLPKLISILE 351
N+E+ +Y L LPD++ L +GR K+ ++ V G L + +
Sbjct: 618 FTANSESMQITGQY-LHKLPDLERL---LGRIKSSVRSSASVLPALLGKKVLKQRVKAFG 673
Query: 352 SLVQNVEASNLNTILSSLQSLKMM 375
+V+ S ++ +L+ + MM
Sbjct: 674 QIVKGFR-SGIDLLLALQKESNMM 696
>UNIPROTKB|P23909 [details] [associations]
symbol:mutS species:83333 "Escherichia coli K-12"
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0032300 "mismatch repair complex"
evidence=IGI] [GO:0032136 "adenine/cytosine mispair binding"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEP] [GO:0043531 "ADP binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0000018 "regulation of DNA recombination"
evidence=IMP] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000166
"nucleotide binding" evidence=IEA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003684
GO:GO:0043531 GO:GO:0008301 GO:GO:0006298 EMBL:U29579 GO:GO:0000018
GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
PDB:2OK2 PDBsum:2OK2 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032300 HOGENOM:HOG000221407 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD EMBL:M64730 EMBL:AF004287 EMBL:AF001987 EMBL:AF001988
EMBL:AF001989 EMBL:AF001990 EMBL:AF001991 EMBL:AF001992
EMBL:AF001993 EMBL:AF001994 EMBL:AF001995 EMBL:AF001996
EMBL:AF001997 EMBL:AF001998 EMBL:AF001999 EMBL:AF002000
EMBL:AF002001 EMBL:AF002002 EMBL:AF002003 EMBL:AF002004
EMBL:AF002005 EMBL:AF002006 EMBL:AF002007 EMBL:AF002008
EMBL:AF002009 EMBL:AF002010 PIR:I54964 RefSeq:NP_417213.1
RefSeq:YP_490942.1 PDB:1E3M PDB:1NG9 PDB:1OH5 PDB:1OH6 PDB:1OH7
PDB:1OH8 PDB:1W7A PDB:1WB9 PDB:1WBB PDB:1WBD PDB:2WTU PDB:3K0S
PDBsum:1E3M PDBsum:1NG9 PDBsum:1OH5 PDBsum:1OH6 PDBsum:1OH7
PDBsum:1OH8 PDBsum:1W7A PDBsum:1WB9 PDBsum:1WBB PDBsum:1WBD
PDBsum:2WTU PDBsum:3K0S ProteinModelPortal:P23909 SMR:P23909
DIP:DIP-10287N IntAct:P23909 MINT:MINT-1264156 SWISS-2DPAGE:P23909
PRIDE:P23909 EnsemblBacteria:EBESCT00000004425
EnsemblBacteria:EBESCT00000016508 GeneID:12932427 GeneID:947206
KEGG:ecj:Y75_p2671 KEGG:eco:b2733 PATRIC:32120868 EchoBASE:EB0620
EcoGene:EG10625 BioCyc:EcoCyc:EG10625-MONOMER
BioCyc:ECOL316407:JW2703-MONOMER BioCyc:MetaCyc:EG10625-MONOMER
EvolutionaryTrace:P23909 Genevestigator:P23909 GO:GO:0032136
Uniprot:P23909
Length = 853
Score = 512 (185.3 bits), Expect = 6.6e-55, Sum P(2) = 6.6e-55
Identities = 122/370 (32%), Positives = 196/370 (52%)
Query: 375 MDRKDAVMDKMKEYLEST-ARRLNLVADKTIKLE-NSPQGFAYRITMKLNNSIDDRYTIL 432
+D A+ D +YLE R T+K+ N+ G+ +I+ ++ Y
Sbjct: 433 LDEWRALADGATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRR 492
Query: 433 DTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQF 492
T++ R+ L + + + ++ + EE+ + + + L Q + LA+
Sbjct: 493 QTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAEL 552
Query: 493 DVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEV 552
DVLV+ +A Y P + + + + RHP+VE +I N + S +
Sbjct: 553 DVLVN--LAERAYTLNYTCPTF--IDKPGIRITEGRHPVVEQVLNEPFIANPLNL-SPQR 607
Query: 553 SFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGI 612
++TGPNMGGKSTY+R + +A IG +VP I +D+IFTRVGAAD G
Sbjct: 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGR 667
Query: 613 STFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFAT 672
STFM+EM ETA ++ TE SLV++DE+GRGTST+DG +A + A LA+ + TLFAT
Sbjct: 668 STFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFAT 727
Query: 673 HFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLE 732
H+ E+ L + NV + ALE D + ++ V+ G+ KSYG+ A +AG P+++++
Sbjct: 728 HYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIK 787
Query: 733 QARDLMKEYE 742
+AR ++E E
Sbjct: 788 RARQKLRELE 797
Score = 124 (48.7 bits), Expect = 6.6e-55, Sum P(2) = 6.6e-55
Identities = 39/155 (25%), Positives = 76/155 (49%)
Query: 230 MSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERH 289
M +A +L + Q + A+ ++L +LD TP G R+L +W+ P++D ++ER
Sbjct: 269 MDAATRRNLEIT-QNLAGGAE--NTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQ 325
Query: 290 AAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISI 349
+ L + T + LR + D++ + R+ + A +D R+ QLP+L +
Sbjct: 326 QTIGALQDFTAGLQPV----LRQVGDLERILARLALRTARPRDLARMRHAFQQLPELRAQ 381
Query: 350 LESLVQNVEASNLNTILSSLQSLK-MMDRKDAVMD 383
LE+ V + L + L+ +++R A++D
Sbjct: 382 LET-VDSAPVQALREKMGEFAELRDLLER--AIID 413
>UNIPROTKB|Q23K54 [details] [associations]
symbol:TTHERM_00194810 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
EMBL:GG662673 ProtClustDB:CLSZ2445539 RefSeq:XP_001017234.1
UniGene:Tth.3690 ProteinModelPortal:Q23K54 EnsemblProtists:EAR96989
GeneID:7830572 KEGG:tet:TTHERM_00194810 Uniprot:Q23K54
Length = 1232
Score = 505 (182.8 bits), Expect = 1.0e-54, Sum P(4) = 1.0e-54
Identities = 120/316 (37%), Positives = 185/316 (58%)
Query: 480 QTLNQLSDVLAQFDVLVSFS-IASTCAPKPYVRPCMKPMG---TGSLVLNQCRHPIVELQ 535
+T + L ++LA+ D L+S S ++ A RP + P + L RHP +
Sbjct: 913 KTWDTLINILAELDCLISLSRVSFLLADGVMSRPELYPASEKYVPFIELTSGRHPCLASM 972
Query: 536 GGVSYIPNDVYF----KSGEVSFN----LVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC 587
G V++IPND+Y ++G+ N L+TGPNMGGKST +R V LAQIGC+VP
Sbjct: 973 G-VNFIPNDIYLGDIKQTGQFEDNKNLILLTGPNMGGKSTTLRMACVMAILAQIGCYVPA 1031
Query: 588 DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTF 647
S +++VD+IFTR+GA+D G STF +EM+ET+ +K+ +++SL+I+DELGRGTSTF
Sbjct: 1032 KSLRMTLVDRIFTRIGASDKLMDGKSTFFIEMEETSNAVKQGSKHSLIIMDELGRGTSTF 1091
Query: 648 DGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIP--TFRNVQVSALEQEDNLVLLY 705
DG +A SI R L + Q LFATH+H + R P + ++ E+ ++ LY
Sbjct: 1092 DGVAIAYSIVRYLVENLQSRCLFATHYHVLLDEFRHYPQIAYYHMACHVDEKRSKVIFLY 1151
Query: 706 QVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETNNREEEYFKT 765
++K G C S+G++ AK+ G ++++E A+ KE+E +L+ + TN R K
Sbjct: 1152 RLKAGECSSSFGINVAKVVGISDNLIEIAKQKAKEFEENLNIQ--HAYNTNKRFGILMKA 1209
Query: 766 VQEGEYQMFDFLQQCL 781
+QE Y + L+Q +
Sbjct: 1210 IQE--YDRDENLEQII 1223
Score = 117 (46.2 bits), Expect = 1.0e-54, Sum P(4) = 1.0e-54
Identities = 37/141 (26%), Positives = 70/141 (49%)
Query: 198 LRSLINYLE---LMNNEDNMNQFSIHSIDYS--KYVHMSSAVMSSLHVLPQQG---STSA 249
+ L NYL+ +++ ++ ++ I+ I+ + + S + L +L ST
Sbjct: 515 MAGLFNYLKSILILDQVISVARYQIYDIEKGVRSCMILDSQSLQHLEILDSSSGPVSTQK 574
Query: 250 QTYD------SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVN-NTEAR 302
+ Y SLLG +++ +TP G+R+L W+ PL D++ I +R+ A+ L N+E
Sbjct: 575 ENYKLHFDDGSLLGYINKTKTPFGYRMLKNWICAPLMDINKIYDRYDAIEDLQKFNSERD 634
Query: 303 MNLHEYALRGLPDMQSLAMRI 323
L + LPD++ + RI
Sbjct: 635 TFLR--GIEKLPDLEKMCGRI 653
Score = 59 (25.8 bits), Expect = 1.0e-54, Sum P(4) = 1.0e-54
Identities = 11/53 (20%), Positives = 27/53 (50%)
Query: 90 GVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIV 142
G+ IV+ T + + DD +++ + ++ Q P+E + + + + KI+
Sbjct: 401 GIIIVESSTNVITVAYLNDDIHFTQFKTLLCQVKPQEIVYDPDNMTHDIKKII 453
Score = 46 (21.3 bits), Expect = 1.0e-54, Sum P(4) = 1.0e-54
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 16 IRFFNRVEFYCVHGEDAELIQRKSNVVYLVKTM--GQKDKTLETVLVNKSNLSCFSHILC 73
I FF +FY + EDA + ++ ++ ++ K M G +K L+ + S L + +
Sbjct: 283 ILFFKLGKFYELFYEDALITHKELDLNWMGKKMHTGFPEKALDKMA---SKLISLGYKVA 339
Query: 74 VISEDKTLE 82
V + +T E
Sbjct: 340 VAEQTETPE 348
Score = 38 (18.4 bits), Expect = 1.6e-46, Sum P(4) = 1.6e-46
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 363 NTILSSLQSL-KMMDRKDAVMDKMK 386
N I + L + K+ DR DA+ D K
Sbjct: 604 NWICAPLMDINKIYDRYDAIEDLQK 628
>POMBASE|SPAC8F11.03 [details] [associations]
symbol:msh3 "MutS protein homolog 3" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0007534 "gene conversion at
mating-type locus" evidence=IMP] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0061500 "gene conversion at
mating-type locus, termination of copy-synthesis" evidence=IMP]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0000403 "Y-form DNA
binding" evidence=ISO] [GO:0000404 "loop DNA binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPAC8F11.03
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006281
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0032135 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0000406 GO:GO:0007534 OrthoDB:EOG42NN7M EMBL:X61306
PIR:S22569 ProteinModelPortal:P26359 STRING:P26359 PRIDE:P26359
NextBio:20804407 Uniprot:P26359
Length = 993
Score = 487 (176.5 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 111/321 (34%), Positives = 178/321 (55%)
Query: 432 LDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIG-ISAGYTQTLNQLSDVLA 490
L + R RF ++ + + + + + I + IS Y + L ++ VL
Sbjct: 637 LSSTRSLFRFHTPKIQSLLIELSSHEENLTISSEKIYRSFLSRISEHYNE-LRNVTTVLG 695
Query: 491 QFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSG 550
D L+SF+ S+ Y RP L++++ RHP++EL S++PN ++ S
Sbjct: 696 TLDCLISFARISS--QSGYTRP---EFSDKELLIHESRHPMIELLSDKSFVPNHIHLSSD 750
Query: 551 EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYR 610
V L+TGPNMGGKS++++ + +S +AQ GCFVP SA + + D I R+G++D+
Sbjct: 751 GVRCLLITGPNMGGKSSFVKQLALSAIMAQSGCFVPAKSALLPIFDSILIRMGSSDNLSV 810
Query: 611 GISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLF 670
+STFM+EM ET V+ K TE S+VIIDELGRGTST DG ++ ++ L + + + LF
Sbjct: 811 NMSTFMVEMLETKEVLSKATEKSMVIIDELGRGTSTIDGEAISYAVLHYLNQYIKSYLLF 870
Query: 671 ATHFHEIALLSRVIP-TFRNVQVSALE-QED-------NLVLLYQVKPGSCVKSYGVHCA 721
THF + +L R R + L+ +ED ++ LY++ PG KSYG++ A
Sbjct: 871 VTHFPSLGILERRFEGQLRCFHMGYLKSKEDFETSVSQSISFLYKLVPGVASKSYGLNVA 930
Query: 722 KMAGYPEDMLEQARDLMKEYE 742
+MAG P +L +A ++ + YE
Sbjct: 931 RMAGIPFSILSRATEISENYE 951
Score = 155 (59.6 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 76/327 (23%), Positives = 132/327 (40%)
Query: 65 LSCFSHILCVISE-DKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKS 123
L ILCV DK+ VG+ + L + DD S L+ +
Sbjct: 229 LQASQFILCVADNVDKSKAKSGRVQVGLIAIQLSSGTTVYDHFQDDFLRSELQTRLSHFQ 288
Query: 124 PKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSE--LK 181
P E + + +++ + + K C + ++D+ + L F S+ +
Sbjct: 289 PCELIYSNKLSSESVALLNHYVSTEKTCGRVVRVQHAVQQDVKLALENLQDFFSSKCIMS 348
Query: 182 NARLLP-EMCLTTATH-----CLRSLINYLELMNNEDNMNQFSIHS-IDYSKYVHMSSAV 234
++++ M + H CL I+YL + ED + + D + +S
Sbjct: 349 GSKIIELHMEKVKSLHSLSIICLDMAISYLMEFSLEDLFVASNFYQPFDSISSMVLSKQA 408
Query: 235 MSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNI 294
+ L + Q T SL +LDR T G R+L +W+++PL D + I+ER AV
Sbjct: 409 LEGLELFVNQ--TDHTPVGSLFWVLDRTYTRFGQRMLQRWLQKPLVDKENIIERLDAVEE 466
Query: 295 LVNNTEARMNLHEYALRGLPDMQSLAMRI----GRKKAGL---KDCYRVYEG------VS 341
L N+ +++ L LPD++ RI G KA K+ Y ++ +
Sbjct: 467 LAFNSNSQVQAIRKMLYRLPDLEKGLSRIYYQRGFYKAASAFSKNSYSCFKSALLRRLIQ 526
Query: 342 QLPKLISILE---SLVQNVEASNLNTI 365
QLP + SI++ + EA N N +
Sbjct: 527 QLPSISSIIDHFLGMFDQKEAENNNKV 553
Score = 39 (18.8 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
Identities = 23/67 (34%), Positives = 31/67 (46%)
Query: 146 DRNKVCMTGRKKN-EFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINY 204
+ NKV M N + SEE DV+ + + ELK + L M T L+ L +Y
Sbjct: 549 NNNKVDMFKDIDNFDLSEEP--NDVDYELAQEIRELKMSIL---MVRTEMDFHLQELRDY 603
Query: 205 LELMNNE 211
LE N E
Sbjct: 604 LEYPNLE 610
>TIGR_CMR|BA_3905 [details] [associations]
symbol:BA_3905 "DNA mismatch repair protein MutS"
species:198094 "Bacillus anthracis str. Ames" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006298
GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_846152.1
RefSeq:YP_020544.1 RefSeq:YP_029871.1 ProteinModelPortal:Q81WR3
DNASU:1087964 EnsemblBacteria:EBBACT00000010607
EnsemblBacteria:EBBACT00000017303 EnsemblBacteria:EBBACT00000020116
GeneID:1087964 GeneID:2814777 GeneID:2848878 KEGG:ban:BA_3905
KEGG:bar:GBAA_3905 KEGG:bat:BAS3618
BioCyc:BANT260799:GJAJ-3677-MONOMER
BioCyc:BANT261594:GJ7F-3794-MONOMER Uniprot:Q81WR3
Length = 892
Score = 563 (203.2 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
Identities = 158/504 (31%), Positives = 257/504 (50%)
Query: 271 LAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGL 330
L + +K+ LK++ + ER A + N AR L R L + ++ I L
Sbjct: 325 LREDLKEKLKEVYDL-ERLAG-KVAFGNVNARDLLQ--LRRSLLQVPAILEAISL----L 376
Query: 331 KDCY--RVYEGVSQLPKLISIL-ESLVQNVEASNLN-TILSSLQSLKMMDRKDAVMDKMK 386
+ Y R+ +G L +L S+ +N S + I+ + K+ D+ V K
Sbjct: 377 DNAYAARLIQGADPCESLTELLGRSIQENPPLSIKDGDIIKDGYNDKL-DQYRYVSKNGK 435
Query: 387 EYL-ESTARRLNLVADKTIKLE-NSPQGFAYRITM-KLNNSIDDRYTILDTVRGGVRFQD 443
++ E R ++ K++K+ N G+ +T L + RY T+ RF
Sbjct: 436 TWIAELEKRERDITGIKSLKIGYNRIFGYYIEVTKANLGALPEGRYERKQTLANAERFIT 495
Query: 444 DRLATANT-----QYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSF 498
D L T + + +Q EY+ ++ EEV + L L+ V+++ DVL SF
Sbjct: 496 DELKEKETLILEAEEKIVQLEYDLFT-ALREEV----KVFIPKLQHLAKVISELDVLQSF 550
Query: 499 SIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVE-LQGGVSYIPNDVYFKSGEVSFNLV 557
+ S + +V+P + + + RHP+VE + G Y+PND F L+
Sbjct: 551 ATVSE--EEQFVKPVLTTKR--EIFIKDGRHPVVEKVLNGKLYVPNDCIMPENMDVF-LI 605
Query: 558 TGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMM 617
TGPNM GKSTY+R + + ++QIGCFVP A + V DQIFTR+GAAD G STFM+
Sbjct: 606 TGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMV 665
Query: 618 EMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEI 677
EM E I +E SL++ DE+GRGTST+DG +A +I + TLF+TH+HE+
Sbjct: 666 EMLEAKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHEL 725
Query: 678 ALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDL 737
+L + +NV VSA+E+ +V L++++ G+ KSYG+H A++A P+ ++ +A+++
Sbjct: 726 TVLEDSLDQLKNVHVSAIEENGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEV 785
Query: 738 MKEYEYSLDTKTPSGDETNNREEE 761
+ + E + P E +E+E
Sbjct: 786 LAQLEGQEEIVIPKRVEVKAQEQE 809
Score = 142 (55.0 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 46/163 (28%), Positives = 82/163 (50%)
Query: 201 LINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHV-LPQQGSTSAQTYDSLLGIL 259
L NY+ + + +++ I Y+ M V S ++ L + T +T SLL +L
Sbjct: 227 LFNYV-IRTQKRSLDHLQPVEIYYTNQF-MKIDVHSKRNLELTETLRTKEKT-GSLLWLL 283
Query: 260 DRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSL 319
D+ +T G R+L QWM++PL + I ER V VN+ R +L E L+ + D++ L
Sbjct: 284 DKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKE-KLKEVYDLERL 342
Query: 320 AMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNL 362
A ++ +D ++ + Q+P ++ + SL+ N A+ L
Sbjct: 343 AGKVAFGNVNARDLLQLRRSLLQVPAILEAI-SLLDNAYAARL 384
Score = 59 (25.8 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
Identities = 26/103 (25%), Positives = 49/103 (47%)
Query: 70 HILCVISEDKTLETV--LTNTVGVAIVDLDTKKFYMGEI-PDDDYYSNLEAIIVQKSPKE 126
H++ +S+ K ++ V L N V + T+K + + P + YY+N + + + K
Sbjct: 210 HLVKNVSQAKLIKAVGRLFNYV------IRTQKRSLDHLQPVEIYYTN-QFMKIDVHSKR 262
Query: 127 CLLPAEYLN--DNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQ 167
L E L + ++ +LD+ K M GR ++ E L+Q
Sbjct: 263 NLELTETLRTKEKTGSLLWLLDKTKTAMGGRMLKQWMERPLIQ 305
>UNIPROTKB|F1MLH1 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:DAAA02021015
EMBL:DAAA02021016 EMBL:DAAA02021017 EMBL:DAAA02021018
IPI:IPI00867495 Ensembl:ENSBTAT00000010107 Uniprot:F1MLH1
Length = 1120
Score = 446 (162.1 bits), Expect = 3.6e-54, Sum P(3) = 3.6e-54
Identities = 126/438 (28%), Positives = 220/438 (50%)
Query: 340 VSQLPKLISILESLVQ--NVEASNLNT---ILSSLQSLKMMD-RKDAVMD---KMKEYLE 390
+ ++P L+S +E ++ N +A+ + + L ++ RKD + D K++ +L+
Sbjct: 660 ILEIPGLLSPVEHYLKILNEQAAKIGDKTELFKDLSDFPLIKKRKDEIQDVTKKIQTHLQ 719
Query: 391 STARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATAN 450
+ L + + + + S Q F + + I + + + + RF +
Sbjct: 720 EIRKILKNPSAQYVTV--SGQEFMIEVKNSAVSCIPTDWVKIGSTKAVSRFHSPFIVE-- 775
Query: 451 TQYQAIQREYETHQQSIVEEVIGISAGYTQ---TLNQLSDVLAQFDVLVSFSIASTCAPK 507
Y+ + + E E + + + TL + LA D ++S +A +
Sbjct: 776 -NYRHLNQLREQLVLDCSAEWLAFLENFNEHYHTLCKAVHHLATIDCILS--LAKVAKQR 832
Query: 508 PYVRPCMKPMGTGSLVLNQCRHPIVELQGGVS--YIPNDVYFKSGEVSFNLVTGPNMGGK 565
Y RP ++ +++ RHP++++ G ++PN ++TGPNMGGK
Sbjct: 833 DYCRPTLQE--ERKILIKNGRHPVIDVLLGEQDQFVPNSTDLSGDSERVMIITGPNMGGK 890
Query: 566 STYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATV 625
S+YI+ + + +AQIG +VP + ATI +VD IFTR+GAAD+ Y+G STFM E+ +TA +
Sbjct: 891 SSYIKQVALITVMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEI 950
Query: 626 IKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALL----S 681
I+K T SLVI+DELGRGTST DG +A + + TLF TH+ + L S
Sbjct: 951 IRKATPQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCELEKSYS 1010
Query: 682 RVIPTFR-----NVQVS---ALEQE---DNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDM 730
+ + + N S A E++ D+++ LYQ+ G +SYG++ AK+A P ++
Sbjct: 1011 QQVGNYHMGFLVNEDESKQDAGEEDQVPDSVIFLYQITRGIAARSYGLNVAKLADVPGEI 1070
Query: 731 LEQARDLMKEYEYSLDTK 748
L++A KE E ++ K
Sbjct: 1071 LKKAASKSKELEGLVNMK 1088
Score = 201 (75.8 bits), Expect = 3.6e-54, Sum P(3) = 3.6e-54
Identities = 85/359 (23%), Positives = 160/359 (44%)
Query: 32 AELIQRKSNVVYLVKTM-GQKDKTLETV--LVNKSNL---SCFSHILCVISEDKTLETVL 85
+ L RK +Y T+ G+ L + VN + + S++LC+ + ++
Sbjct: 311 SSLFSRKLTALYTKSTLIGEDVNPLVKLDDAVNVDEVMTDTSTSYLLCICENKENVKDKK 370
Query: 86 TNTVGVAIVDLD--TKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKI-- 141
+V + IV + T + D S LE I+ P E LLP++ + I
Sbjct: 371 RGSVSIGIVGVQPATGEVVFDSFQDSASRSELETRILCLQPVELLLPSDLSEQTETLIHR 430
Query: 142 VTILD-RNKVCMTGRKKNEFSE-EDLMQDVNRLVRFDDSELKNARLLPEMC-LTTATHC- 197
VT + R+ R KN + E Q+V D ++K ++ ++ L C
Sbjct: 431 VTAMSVRDDRIRVERMKNVYFEYSHAFQEVTEFYAKDVVDIKGSQSFSDIINLEKPVICS 490
Query: 198 LRSLINYLELMNNEDNMNQ---FSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDS 254
L ++I YL+ N E +++ F S + +++ ++ + +L +L Q T +T S
Sbjct: 491 LAAIIRYLKEFNLEKVLSKPKNFKQLSGEM-EFMTINGTTLRNLEIL--QNQTDMKTKGS 547
Query: 255 LLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLP 314
L +LD +T G R L +W+ QPL L I R AV+ ++++ + E LR LP
Sbjct: 548 LFWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLP 607
Query: 315 DMQSLAMRIGRKKAGLKDCYRVYEGVSQLP-KLISILESLVQNVEASNLNTILSSLQSL 372
D++ I KK ++ + + + + L + +++ ++ +VE+ L T + + L
Sbjct: 608 DIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQALIPAVNSHVESELLQTFILEIPGL 666
Score = 41 (19.5 bits), Expect = 3.6e-54, Sum P(3) = 3.6e-54
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 25 YCVHGEDAELIQRKSNV 41
Y GEDAE+ R+ N+
Sbjct: 244 YRFFGEDAEIAARELNI 260
>TIGR_CMR|SPO_0011 [details] [associations]
symbol:SPO_0011 "DNA mismatch repair protein MutS"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_165284.1
ProteinModelPortal:Q5LWH0 PRIDE:Q5LWH0 GeneID:3194479
KEGG:sil:SPO0011 PATRIC:23373251 Uniprot:Q5LWH0
Length = 877
Score = 499 (180.7 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
Identities = 125/386 (32%), Positives = 204/386 (52%)
Query: 370 QSLKMMDRKDAVMDKMKE-YLESTARRLNLVADKTIKLENSPQGFAYRITMK-----LNN 423
++ ++ D+ V+ M++ Y E T +A IK N+ G+ T LN
Sbjct: 440 EARELRDKGRGVIAGMQQKYAEHTG-----IASLKIK-HNNVLGYFIETTATHAAKMLNP 493
Query: 424 SIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLN 483
+ + Y T VRF L+ T+ ++ + + G LN
Sbjct: 494 PLSETYIHRQTTANQVRFTTVELSELETRILNAGNHALEIEKRLYSSLSGAVLEQAARLN 553
Query: 484 QLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVE----LQGGVS 539
+ LA+ D+ + +A + + RP + P + + + RHP+VE QGG
Sbjct: 554 IAARGLAELDLATA--LADLARAENWCRPSVDP--SRAFAIEGGRHPVVEHALRRQGGDP 609
Query: 540 YIPNDVYFKSGE-VSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQI 598
++ ND + + + L+TGPNM GKSTY+R + LAQIG +VP DSA I VV Q+
Sbjct: 610 FVANDCDLSADKGAAIRLLTGPNMAGKSTYLRQNALITLLAQIGSYVPADSAHIGVVSQL 669
Query: 599 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAR 658
F+RVGA+D RG STFM+EM ETA ++ + +++LVI+DE+GRGT+T+DG +A +
Sbjct: 670 FSRVGASDDLARGRSTFMVEMVETAAILNQADDHALVILDEIGRGTATYDGLSIAWATLE 729
Query: 659 ELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGV 718
L + + LFATH+HE+ L+ + N+ V+ E E ++ L++V+ G+ +SYGV
Sbjct: 730 HLHATNRCRALFATHYHELTALAATLDGVENLTVAVKEWEGEVIFLHEVRKGAADRSYGV 789
Query: 719 HCAKMAGYPEDMLEQARDLMKEYEYS 744
A++AG P ++ +AR ++ + E S
Sbjct: 790 QVAQLAGLPPSVVARARVVLDQLEKS 815
Score = 133 (51.9 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
Identities = 39/155 (25%), Positives = 77/155 (49%)
Query: 200 SLINYLEL-MNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGI 258
+LI+YL++ + + Q + + + + + +A +L + S S + SLL +
Sbjct: 240 ALIDYLDITQKGKLPLLQPPVQEAE-DRVMQIDAATRRNLELTR---SLSGERGGSLLSV 295
Query: 259 LDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQS 318
+DR TP G RLL Q + P ++LD I R +A++ ++++ +L ALR PD+
Sbjct: 296 IDRTVTPGGARLLEQRLGSPSRNLDVIHARLSALDFCIDHSTLAADLRA-ALRKTPDLDR 354
Query: 319 LAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESL 353
R+ + G +D + G+ Q + ++ + L
Sbjct: 355 ALSRLALDRGGPRDLAAIRNGLGQAEAIAALCDGL 389
>CGD|CAL0006305 [details] [associations]
symbol:MSH6 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032138 "single base
insertion or deletion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0006305 GO:GO:0005524 GO:GO:0006298
EMBL:AACQ01000010 EMBL:AACQ01000009 GO:GO:0030983 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
PIRSF:PIRSF037677 RefSeq:XP_722156.1 RefSeq:XP_722270.1
ProteinModelPortal:Q5AL33 STRING:Q5AL33 GeneID:3636059
GeneID:3636161 KEGG:cal:CaO19.12411 KEGG:cal:CaO19.4945
Uniprot:Q5AL33
Length = 1214
Score = 453 (164.5 bits), Expect = 9.9e-54, Sum P(3) = 9.9e-54
Identities = 118/413 (28%), Positives = 201/413 (48%)
Query: 342 QLPKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLV-A 400
++ +LI E +A N + I+ S + + D A M+ +K L+ +
Sbjct: 753 EMRELIQQWEDAFDREQAKN-DIIVPSAGTDEEFDNSQASMEDLKTQLDKLLKEYKRTYK 811
Query: 401 DKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREY 460
+ I +S + Y I + + + + + R+ + T + + Q
Sbjct: 812 SQEICYRDSGKEI-YLIEVPFKLKVPGDWKQMGSTSKVKRYYSPEVETLAKELRGQQ--- 867
Query: 461 ETHQQSIVEEVIGISAGYTQTLN---QLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPM 517
E H+ I + + + N Q+ +A D L++ + AS P RP +
Sbjct: 868 ELHKMVCDTLKIRMYEKFDKHYNVWMQVIQTIANIDCLLALTKASETIGYPSCRPKLIEA 927
Query: 518 GTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 577
G + + RHP +IPNDV E F L+TG N GKST +R+ +++
Sbjct: 928 DKGCINFKELRHPC--FVSTKEFIPNDVQLGGDEPHFGLLTGANAAGKSTLMRTTALAII 985
Query: 578 LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 637
L+QIGC++P +SA ++ VD+I TR+GA D+ +G STF +E+ ET ++ T SLVI+
Sbjct: 986 LSQIGCYIPAESAELTPVDRIMTRLGANDNILQGKSTFFVELSETKKILSNATPRSLVIL 1045
Query: 638 DELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQ 697
DELGRG S+ DGF +A S+ LA+H Q FATH+ + L + P + +++ +
Sbjct: 1046 DELGRGGSSSDGFAIAESVLHHLATHVQSLGFFATHYGTLGLSFKTHPQIKQLRMGIVVD 1105
Query: 698 ED--NLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTK 748
N+ LY+++ G+ KS+G++ A M G P+ +++ A K YE + K
Sbjct: 1106 SGSRNITFLYKLETGTAPKSFGMNVASMCGIPDAIVDNAEIAAKAYEQTSKLK 1158
Score = 191 (72.3 bits), Expect = 9.9e-54, Sum P(3) = 9.9e-54
Identities = 78/315 (24%), Positives = 142/315 (45%)
Query: 69 SHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECL 128
++ L + EDK E T T GVA VD T + E+ DD + L+ +I Q +PKE +
Sbjct: 442 TYCLSIKEEDK--EDG-TKTFGVAFVDTATSELNFIELDDDAECTKLDTLITQINPKEII 498
Query: 129 LPAEYLNDNKNKIVTILDRN--KVCMTGRKKNEFSEEDL-MQDVNRLVRFDDSELKNARL 185
L KI+ + ++ EF + D+ ++ + + +D L +
Sbjct: 499 CEKGNLCQIATKILKFCTHSDHQIWNALNPITEFWDYDIALEQLVKAKYYDAENLDDYSN 558
Query: 186 LPEMCLT------TATHCLRSLINYLELMNNEDN-MNQFSIHSIDYSKYV--HM--SSAV 234
P++ + A + L+ YL+++ + + M+ +IH S+ HM
Sbjct: 559 YPKVLVDFKENHQVAFNAFGGLLYYLKMLKLDTSIMSLGNIHEYHISRNSASHMILDGVT 618
Query: 235 MSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNI 294
+++L +L ++ T +L +++R T G R L +W+ PL +D I +R+ +V+
Sbjct: 619 LNNLEIL--NNTSDGTTKGTLFKLVNRATTSFGKRQLQKWVLHPLFKVDEINQRYDSVDY 676
Query: 295 LVNN-TEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESL 353
L+N+ E R L + L +PD++ L R+ +D +V E + + S L
Sbjct: 677 LMNDGLELRSILQD-TLANIPDLERLLARVHGGTLKFRDFLKVIESFESIAGVSSKLVDF 735
Query: 354 VQNVEASNLNTILSS 368
NVE+ L L S
Sbjct: 736 T-NVESGMLYKYLKS 749
Score = 41 (19.5 bits), Expect = 9.9e-54, Sum P(3) = 9.9e-54
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 2 KFYLF---FFPQKSK--TTIRFFNRVEFYCVHGEDA 32
KF F ++ KSK T+ FF + +FY ++ DA
Sbjct: 314 KFTAFEKQYWQIKSKMWNTVVFFQKGKFYELYENDA 349
>UNIPROTKB|Q5VR41 [details] [associations]
symbol:OJ1174_D05.15 "Os01g0180600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 EMBL:AP008207 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR015536 PANTHER:PTHR11361:SF31
HOGENOM:HOG000030287 ProtClustDB:CLSN2680110 EMBL:AP003047
EMBL:AP003118 RefSeq:NP_001042208.1 UniGene:Os.74356 STRING:Q5VR41
EnsemblPlants:LOC_Os01g08540.1 GeneID:4325353 KEGG:osa:4325353
OMA:KFYELYD Uniprot:Q5VR41
Length = 1224
Score = 449 (163.1 bits), Expect = 1.2e-53, Sum P(3) = 1.2e-53
Identities = 109/317 (34%), Positives = 176/317 (55%)
Query: 467 IVEEVIGISAGYTQTLNQLS--DVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVL 524
+V+ ++G ++ ++ +N LS DVL F + S +TC P ++ P+ L +
Sbjct: 879 LVDLLVGKASEWSLVINALSTIDVLRSFAAMALSSFGTTCRPNILLKG-KAPV----LQM 933
Query: 525 NQCRHPIVELQGGVSYIPNDVYFK---SGEVSFNLV-TGPNMGGKSTYIRSIGVSVFLAQ 580
HP + +PND+ SG+ F L+ TGPNMGGKST +R+ +++ LAQ
Sbjct: 934 KGLWHPYAFAESVNGLVPNDLSLGQNLSGQNRFALLLTGPNMGGKSTIMRATCLAIVLAQ 993
Query: 581 IGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDEL 640
+GC+VPC S +++ D IFTR+GA D G STF++E ETA++++ TE+SLV++DEL
Sbjct: 994 LGCYVPCQSCELTLADAIFTRIGAMDRIMSGESTFLVECTETASILENATEDSLVLLDEL 1053
Query: 641 GRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA--LLSRVIPTFRNVQVSALEQ- 697
GRGTSTFDG+ +A ++ R L + LFATH+H + S T +++ +
Sbjct: 1054 GRGTSTFDGYAIAYAVFRHLVEAVRCRLLFATHYHPLTKEFASHPHVTLQHMACMLKPRN 1113
Query: 698 -----EDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQAR---DLMKEYEYSLDTKT 749
E L LY++ G+C +SYG+ A MAG P ++E+A ++M+ +
Sbjct: 1114 GGDGGEKELTFLYRLTSGACPESYGLQVATMAGLPRSIVERASAAGEMMRSKIAGNFRSS 1173
Query: 750 PSGDETNNREEEYFKTV 766
E + EE+ +T+
Sbjct: 1174 EERAEFSTLHEEWVRTI 1190
Score = 197 (74.4 bits), Expect = 1.2e-53, Sum P(3) = 1.2e-53
Identities = 88/333 (26%), Positives = 146/333 (43%)
Query: 37 RKSNVVYLVKTMGQKDKTLETVLVNKSNLSCFS-HILCVISEDKTLETVLTNTVGVAIVD 95
R SN V L K + T TV SN+ + H+L + ++ TL + + G A +D
Sbjct: 495 RGSNSVILRKLVHVS--TPSTV--GDSNIGADAVHLLSL--KEITLASNGSRVYGFAFLD 548
Query: 96 LDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIV---TILDRNKVCM 152
K ++G + DDD ++ L A++VQ SPKE + L+ ++++ K+ +
Sbjct: 549 YAALKIWVGSVHDDDTFAALGALLVQVSPKEIIYETSGLSKETHRLIKKYASAGSVKMQL 608
Query: 153 T---GRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHC-LRSLINYLELM 208
T G ++ SE + D + S +A L A C L L+++L +
Sbjct: 609 TPLYGLYFSDVSEIQTLIDSRGYFKASTSSWLSA--LNSSVNKDAVICALGGLVSHLTRL 666
Query: 209 NNEDNMNQFSIHSID-YSKYVHMSSAVMSSLHVLPQQ--GSTSAQTYDSLLGILDRCRTP 265
ED + + + Y + M + +L + G +S Y L + C TP
Sbjct: 667 MLEDALKNGEVLAYHVYRTCLRMDGQTLVNLEIFSNNFDGGSSGTLYKHL----NHCITP 722
Query: 266 QGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGR 325
G RLL +W+ PLKD+DAI ER V + N E+ LR +PD++ L R+ +
Sbjct: 723 CGKRLLRRWICHPLKDIDAINERLDIVEGFIQNCGLGSVTLEH-LRKVPDLERLLGRV-K 780
Query: 326 KKAGLKDCYRV-YEGVSQLPKLISILESLVQNV 357
GL + + G L + I LV+ +
Sbjct: 781 STVGLSSAVLLPFVGEKILKRRIKTFGMLVKGL 813
Score = 39 (18.8 bits), Expect = 1.2e-53, Sum P(3) = 1.2e-53
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 11 KSKTTIRFFNRVEFYCVHGEDAELIQRKSNVVYLVKTMGQ 50
K + FF +FY ++ DAE+ Q++ + + +G+
Sbjct: 416 KYMDVVLFFKVGKFYELYEVDAEIGQKELDWKMTISGVGK 455
>TIGR_CMR|NSE_0335 [details] [associations]
symbol:NSE_0335 "DNA mismatch repair protein MutS"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_506224.1 STRING:Q2GE72
GeneID:3931998 KEGG:nse:NSE_0335 PATRIC:22680759
ProtClustDB:CLSK2528033 BioCyc:NSEN222891:GHFU-360-MONOMER
Uniprot:Q2GE72
Length = 815
Score = 510 (184.6 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 111/308 (36%), Positives = 171/308 (55%)
Query: 439 VRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSF 498
+R+ L Q Y + + E+ G L ++ +A+ DV+ SF
Sbjct: 503 IRYTTLELQNLEAQIAKANENYRKLELELFRELCGKILASEGPLKEMIAAIAELDVIASF 562
Query: 499 SIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVT 558
A + YVRP + + L ++ RHP VE +++PND+ F S E ++T
Sbjct: 563 --AEIAVQRKYVRPQVD--NSNELRISGGRHPFVEQVN--AFVPNDLAFTSAE-RVCVLT 615
Query: 559 GPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMME 618
GPNM GKSTY+R + LAQ+G FVP DSA I VVD++F+R+GA+D+ G STFM+E
Sbjct: 616 GPNMAGKSTYLRQNALITILAQMGSFVPADSAHIGVVDRVFSRIGASDNIAMGKSTFMVE 675
Query: 619 MKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA 678
M ETA ++ T SLVI+DE+GRGTST DG +A ++ L T+FATH++E+
Sbjct: 676 MMETANIVNNATCRSLVILDEVGRGTSTLDGISIAQAVLEYLHDSVNCKTIFATHYNELC 735
Query: 679 LLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLM 738
L +P + + D ++L+Y++ PG SYG+H A ++G PE ++ +A ++
Sbjct: 736 DLESKLPRMKCYSIEVKRWRDEVLLMYKIVPGRGDNSYGIHTAMLSGIPEAIIRRATEIA 795
Query: 739 KEYEYSLD 746
KE S++
Sbjct: 796 KEKNLSIE 803
Score = 112 (44.5 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 54/245 (22%), Positives = 101/245 (41%)
Query: 113 SNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRL 172
++LE+ + + PKE LLP + ++ K++ +++ + +T R N F + ++
Sbjct: 163 ASLESYLAKIEPKEVLLP-DAIDSELRKVI---EQHNIHITRRPNNLFQFDYAANELRGF 218
Query: 173 VRFDDSELKNARLLPEMCLTTATHCLRSLINYLELMN-NEDNMNQFSIHSIDYSKYVHMS 231
+AR P C A C +LI Y E +F + Y+ +
Sbjct: 219 YNVLQLGFMDARS-P--CEIVA--C-GALIAYARATQMGELKRLEFP-KRYEKGYYLALD 271
Query: 232 SAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAA 291
++ + L ++ Q T + +SLL ++D+ T G RLL ++ PL ++ I R
Sbjct: 272 ASTIRGLELIESQ--TPGEK-NSLLQVIDQTCTAGGKRLLKSYIVSPLISVEEIQARQDK 328
Query: 292 VNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILE 351
V E R + L +PD + RI + DC V+ + L
Sbjct: 329 VEFFFIQEELRKKVRT-ELANIPDAERALSRIALNRGEPIDCLAVHSCMRSSLLLAECFS 387
Query: 352 SLVQN 356
+ ++N
Sbjct: 388 AFLEN 392
Score = 74 (31.1 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
Identities = 38/130 (29%), Positives = 67/130 (51%)
Query: 32 AELIQRKSNVVYLVKTMGQKDKTLETVLVNKSNLSCFSHILCVISEDKTLETVLTNTVGV 91
A I R+ +VV LV T G T + +LV+ N +++LCV + K N +G+
Sbjct: 102 ATAIVRR-DVVRLV-TPGTL--TEDNLLVSGEN----NYLLCV-APGK-------NEIGL 145
Query: 92 AIVDLDTKKF-YMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKV 150
A +D+ TKK + P ++LE+ + + PKE LLP + ++ K++ +++ +
Sbjct: 146 AWLDISTKKIVFTSANP-----ASLESYLAKIEPKEVLLP-DAIDSELRKVI---EQHNI 196
Query: 151 CMTGRKKNEF 160
+T R N F
Sbjct: 197 HITRRPNNLF 206
>UNIPROTKB|Q8F496 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:189518 "Leptospira interrogans serovar Lai str. 56601"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300 OMA:HYFELTV
EMBL:AE010300 GenomeReviews:AE010300_GR KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:NP_712327.1 ProteinModelPortal:Q8F496
PaxDb:Q8F496 GeneID:1151489 KEGG:lil:LA_2146 PATRIC:22385139
BioCyc:LINT189518:GJBB-1740-MONOMER Uniprot:Q8F496
Length = 848
Score = 547 (197.6 bits), Expect = 1.3e-53, Sum P(3) = 1.3e-53
Identities = 141/381 (37%), Positives = 216/381 (56%)
Query: 371 SLKMMDRKDAVMDKMKEY-LESTARRLNLVADKTIKLE-NSPQGFAYRITMKLNNSIDDR 428
S K+ ++A + K K++ L+ + T+K+ N G+ I+
Sbjct: 418 SQKLDQAREAGV-KGKDWILDLETKEKKRTGLNTLKIRYNKIVGYFIEISRAQAEQAPKD 476
Query: 429 YTILDTVRGGVRFQDDRLATAN-TQYQA--IQREYE-THQQSIVEEVIGISAGYTQTLNQ 484
Y T+ G RF +L T +A I +E E T +VEEV+ S+ +L
Sbjct: 477 YLKKQTLVGSERFTMPKLEEIERTILEADEIIQEIERTEFNRMVEEVLKFSS----SLLS 532
Query: 485 LSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVE--LQGGVSYIP 542
S+ + D +S A ++RP K SL L+ RHP+VE L G +IP
Sbjct: 533 FSEEIGDLDFQISLLTAKD--KFGWIRP--KLSEDRSLDLSDSRHPVVEATLPPGQEFIP 588
Query: 543 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRV 602
N VY + + + ++TGPNM GKST++R I ++ L QIG FVP SA + +VD++FTR+
Sbjct: 589 NSVYLDTQDKAIAVLTGPNMAGKSTFMRQIALNQILFQIGAFVPAKSAKLPIVDKLFTRI 648
Query: 603 GAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELAS 662
GA D+ G STF +EMKETA ++ TE+SL++ DE+GRGTST+DG +A SI L+S
Sbjct: 649 GAGDNLTAGESTFFVEMKETANILNHYTEDSLILFDEVGRGTSTYDGMSIAWSILEYLSS 708
Query: 663 HR-QPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCA 721
+P T+FATH+HE+ LSR+ F N+ + LE+ED ++ L +VK G KS+G++ A
Sbjct: 709 LSVRPKTIFATHYHELTELSRLGGIF-NLYLETLEKEDRVLFLRKVKVGKAKKSFGIYVA 767
Query: 722 KMAGYPEDMLEQARDLMKEYE 742
K+AG PE ++++A +L+ + E
Sbjct: 768 KIAGVPEPIVKRAAELLTDLE 788
Score = 63 (27.2 bits), Expect = 1.3e-53, Sum P(3) = 1.3e-53
Identities = 29/128 (22%), Positives = 54/128 (42%)
Query: 226 KYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAI 285
K++ M + +L ++ + + ++L I + C T +G RLL Q + P D +
Sbjct: 255 KFLEMDRETIRNLELVENEKEKN----NTLYSIFNFCNTAKGKRLLKQRILFPECDPVVL 310
Query: 286 VERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPK 345
R +IL+ A + AL+ D++ + R A +D + +S K
Sbjct: 311 YSRWEKQDILLKTVLAP---YITALKDFGDLERILTRFRGNHAYPRDFRSLLNSISSGIK 367
Query: 346 LISILESL 353
L LE +
Sbjct: 368 LKEELEKV 375
Score = 52 (23.4 bits), Expect = 1.8e-52, Sum P(3) = 1.8e-52
Identities = 37/143 (25%), Positives = 69/143 (48%)
Query: 92 AIVDLDTKKFYMGEIPDDDYYSNLEAII--VQK-SPKECLLP-AEY-----LNDNKNKIV 142
AI D T + + + + LE +I ++K P E +P +E+ L KN+
Sbjct: 153 AIADFSTGEVFYSSVS----VTGLERLIAELEKFKPSEICVPKSEHTFFQELEYFKNREF 208
Query: 143 TILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCL---R 199
T+L +N++ + +K+ F + L + +N +R ++ N +L E + ++ L R
Sbjct: 209 TVL-KNQIETS--EKDSF--QVLSKYLNEYIR--ETYRDNKLVLREPKILSSGKFLEMDR 261
Query: 200 SLINYLELMNNEDNMNQFSIHSI 222
I LEL+ NE N +++SI
Sbjct: 262 ETIRNLELVENEKEKNN-TLYSI 283
Score = 40 (19.1 bits), Expect = 1.3e-53, Sum P(3) = 1.3e-53
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 15 TIRFFNRVEFYCVHGEDAEL 34
TI FF +FY + EDA++
Sbjct: 38 TILFFRMGDFYEMFLEDAKI 57
>UNIPROTKB|G4NEZ2 [details] [associations]
symbol:MGG_00704 "DNA mismatch repair protein msh6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CM001235
GO:GO:0006298 GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR017261 PIRSF:PIRSF037677 RefSeq:XP_003718302.1
ProteinModelPortal:G4NEZ2 EnsemblFungi:MGG_00704T0 GeneID:2675105
KEGG:mgr:MGG_00704 Uniprot:G4NEZ2
Length = 1218
Score = 454 (164.9 bits), Expect = 2.0e-53, Sum P(3) = 2.0e-53
Identities = 101/296 (34%), Positives = 164/296 (55%)
Query: 456 IQREYETHQQSIVEEVIG-----ISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYV 510
+Q ETH Q IV++V Y + + +++Q D L+ + AS+ +P
Sbjct: 873 LQEAEETHSQ-IVKDVAARFFKRFDVDYAIWIQAIR-IISQLDCLICLAKASSSLGEPSC 930
Query: 511 RPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIR 570
RP + + RHP + L +IPND+ + + NL+TG N GKST +R
Sbjct: 931 RPTFVDHERSVVEFEELRHPCM-LNTVDDFIPNDIKLGGDDANINLLTGANAAGKSTVLR 989
Query: 571 SIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCT 630
++V +AQIGC+VP SA ++ VD+I +R+GA D+ + STF +E+ ET ++ + T
Sbjct: 990 MSCIAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEAT 1049
Query: 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFR-- 688
SLVI+DELGRGTS++DG +A ++ +ASH FATH+H +A P R
Sbjct: 1050 PRSLVILDELGRGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRAK 1109
Query: 689 NVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYS 744
+Q+ + + + LY+++ G S+G+HCA M G + ++E+A KE+E++
Sbjct: 1110 RMQIQVDDAKRRVTFLYRLEDGVAEGSFGMHCAAMCGISDRVIERAEVAAKEWEHT 1165
Score = 186 (70.5 bits), Expect = 2.0e-53, Sum P(3) = 2.0e-53
Identities = 79/330 (23%), Positives = 145/330 (43%)
Query: 59 LVNKSNLSCFSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAI 118
LV S L CV ++ T+ G+A VD T +F++ + DD + E
Sbjct: 445 LVEGSMLQDDMATFCVAIKESTINN--HPAFGIAFVDAATGQFFISQFEDDVDLTKFETF 502
Query: 119 IVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTG----RKKNEFSE-EDLMQDVNRLV 173
+ Q SP+E LL ++ K + IL N T + +EF + E ++++
Sbjct: 503 VAQTSPRELLLEKSNIS---TKALRILKNNTSPTTIWNYLKPDSEFLDPETTRRELSCGD 559
Query: 174 RF------DDSELKNARLLPEMCLTTATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKY 227
F D++E+ L + +L++YL ++ E ++ S + ++
Sbjct: 560 YFKVADGGDETEVWPEALDKSRDKDLLMSAMGALVHYLRVLKLERSL--LSQGNFEWYNP 617
Query: 228 VHMSSAVM----SSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLD 283
+H ++ S +++ S + +L +L+RC TP G RL QW+ PL ++
Sbjct: 618 IHRDGTLVLDGQSLINLEVFSNSVNGGPEGTLFNLLNRCITPFGKRLFRQWVCHPLCNIK 677
Query: 284 AIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQL 343
I ER AV++L N + + + +PD++ L RI +D RV EG Q+
Sbjct: 678 KINERLDAVDML-NADRSILEQFSSLMSKMPDLERLISRIHAGVCKAEDFVRVLEGFEQI 736
Query: 344 PKLISILESLVQNVEASNLNTILSSLQSLK 373
+S+L + ++ ++SS+ LK
Sbjct: 737 EYAMSMLSAFGGG--NGLVDRLISSMLDLK 764
Score = 42 (19.8 bits), Expect = 2.0e-53, Sum P(3) = 2.0e-53
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 10 QKSKTTIRFFNRVEFYCVHGEDAEL 34
QK T+ FF + +FY ++ DA +
Sbjct: 339 QKLWDTVVFFKKGKFYELYENDATI 363
>UNIPROTKB|Q8A334 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_812033.1
ProteinModelPortal:Q8A334 GeneID:1075929 KEGG:bth:BT_3121
PATRIC:21061245 BioCyc:BTHE226186:GJXV-3185-MONOMER Uniprot:Q8A334
Length = 862
Score = 496 (179.7 bits), Expect = 2.3e-53, Sum P(3) = 2.3e-53
Identities = 105/258 (40%), Positives = 156/258 (60%)
Query: 489 LAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQG--GVSYIPNDVY 546
+A+ D L+SF A+ Y+RP ++ L + Q RHP++E Q G YI NDV
Sbjct: 540 IARLDCLLSF--ANVARENNYIRPVIEDNDV--LDIRQGRHPVIEKQLPIGEKYIANDVM 595
Query: 547 FKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAAD 606
S ++TGPNM GKS +R + LAQIG FVP +SA I +VD+IFTRVGA+D
Sbjct: 596 LDSASQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGASD 655
Query: 607 SQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASH--R 664
+ G STFM+EM E A ++ + SLV+ DELGRGTST+DG +A +I + H
Sbjct: 656 NISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPKA 715
Query: 665 QPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMA 724
+ TLFATH+HE+ + + +N VS E ++ ++ L +++ G S+G+H AKMA
Sbjct: 716 KARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHVAKMA 775
Query: 725 GYPEDMLEQARDLMKEYE 742
G P+ ++++A ++K+ E
Sbjct: 776 GMPKSIVKRANTILKQLE 793
Score = 120 (47.3 bits), Expect = 2.3e-53, Sum P(3) = 2.3e-53
Identities = 48/182 (26%), Positives = 83/182 (45%)
Query: 200 SLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGIL 259
+++ YL + + + S+ I+ KYV + + SL ++ GS + SLL ++
Sbjct: 228 AILQYLTMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELI---GSMN-DGGSSLLNVI 283
Query: 260 DRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSL 319
DR +P G RLL +WM PLKD I +R V + + L E L + D++ +
Sbjct: 284 DRTISPMGARLLKRWMVFPLKDEKPINDRLNVVEYFFRQPDFK-ELIEEQLHLIGDLERI 342
Query: 320 AMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQN-VEASN--LNTILSSLQ-SLKMM 375
++ + ++ V QL + +E + Q +EA N LN I L + +
Sbjct: 343 ISKVAVGRVSPRE-------VVQLKVALQAIEPIKQACLEADNASLNRIGEQLNLCISIR 395
Query: 376 DR 377
DR
Sbjct: 396 DR 397
Score = 47 (21.6 bits), Expect = 2.3e-53, Sum P(3) = 2.3e-53
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 90 GVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECL 128
GVA +D+ T +F E P D Y ++ ++ PKE L
Sbjct: 132 GVAFLDISTGEFLTAEGPFD-Y---VDKLLNNFGPKEIL 166
>POMBASE|SPCC285.16c [details] [associations]
symbol:msh6 "MutS protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=ISO]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPCC285.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0006298 GO:GO:0043570
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677 EMBL:AF207839
PIR:T41262 RefSeq:NP_588344.1 ProteinModelPortal:O74502
STRING:O74502 EnsemblFungi:SPCC285.16c.1 GeneID:2539215
KEGG:spo:SPCC285.16c HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
NextBio:20800385 Uniprot:O74502
Length = 1254
Score = 456 (165.6 bits), Expect = 3.7e-53, Sum P(3) = 3.7e-53
Identities = 98/273 (35%), Positives = 150/273 (54%)
Query: 472 IGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPI 531
I + Y Q L L A D S S A+ +PY RP + G L + RHP
Sbjct: 938 IRFDSNYEQWL-ALIKYTASIDCFFSLSQAAAALGEPYCRPEIIEQKDGHLYFEELRHPC 996
Query: 532 VELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSAT 591
+ +++PNDV + ++TGPNM GKST +R + ++V +AQ+GC+VP A+
Sbjct: 997 INASAASTFVPNDVVLGGESPNMIVLTGPNMAGKSTLLRQVCIAVIMAQLGCWVPAKRAS 1056
Query: 592 ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFG 651
I+ + I+TR+GA D STFM+E+ ET ++ +C SLVI+DELGRGTST+DG
Sbjct: 1057 ITPMTSIYTRLGANDDIMSARSTFMVELSETKKILDECGPKSLVILDELGRGTSTYDGHA 1116
Query: 652 MACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQED--NLVLLYQVKP 709
+A ++ L S+ F+TH+ + + R +Q++A E + LY+++
Sbjct: 1117 IAYAVLHHLVSNIGCLGFFSTHYQSLCVDFMHHRQVRLMQMAAAVDEKIRRVTFLYKLED 1176
Query: 710 GSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
G C KSYG++ A MAG PE +++ A + E E
Sbjct: 1177 GICPKSYGMNVASMAGLPEKVIDAAEEKASELE 1209
Score = 186 (70.5 bits), Expect = 3.7e-53, Sum P(3) = 3.7e-53
Identities = 82/357 (22%), Positives = 153/357 (42%)
Query: 30 EDAELIQRKSNVVYLVKTMGQKDKTLETVLVNKSNLSCFSHILCVISEDKTLETVLTNTV 89
+D + Q++ VV T TL + S+LS + C+ ++ +
Sbjct: 464 KDRQRTQKEEKVVQRGLTQVLTSGTLVDEAMLTSDLSTY----CMAIKESLQSDNEEPSF 519
Query: 90 GVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTI-LDRN 148
G+ +D T F+M E DD + + L+ ++ Q PKE +L ++ + + + +
Sbjct: 520 GICFIDTSTGGFHMCEFTDDIHRTKLDTLLTQVRPKELILEKSKISQKSIRAIKYCVSSS 579
Query: 149 KVCMTGRKKNEFSEEDLMQDVNRLVRFD--DSELKNARLLPEMCLTT---ATHCLRSLIN 203
+ + EF + + ++ ++ D + L+ A + + L+ A +L
Sbjct: 580 SIWNFIKPYTEFWDNERVE--REIIAGDYFKNGLEGAPKILKSYLSEKPLAISAFGALFW 637
Query: 204 YL-ELMNNED--NMNQFSIHSIDY-SKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGIL 259
YL +L ++D +M F + S + M+ + +L + S + +L +L
Sbjct: 638 YLRQLKLDKDMCSMGNFDEYDASQQSTSLLMNGQTLKNLEIF--SNSFDGGSEGTLFHLL 695
Query: 260 DRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSL 319
RC TP G RL W+ PL+ AI R V ++ +N R + + L LPD++ L
Sbjct: 696 CRCVTPFGKRLFHTWLCHPLRSGTAINARLDVVELIADNPVIRDTIWGF-LHKLPDLERL 754
Query: 320 AMRI--GRKKAGLKDCYRVYEGVSQLPKLISIL-ESLVQNVEASNLNTILSSLQSLK 373
R+ GR K D RV EG ++ L E ++ E + L I+ S ++K
Sbjct: 755 ISRVHAGRSKPA--DFVRVLEGFQRINSAFDQLREEFMEVAEGTLLGEIIQSAPNMK 809
Score = 38 (18.4 bits), Expect = 3.7e-53, Sum P(3) = 3.7e-53
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 15 TIRFFNRVEFYCVHGEDAEL 34
T+ FF + +FY ++ DA +
Sbjct: 391 TVVFFQKGKFYELYENDAAI 410
>UNIPROTKB|P20585 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein Msh3" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0016447 "somatic recombination of immunoglobulin gene segments"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019899 "enzyme binding" evidence=IPI] [GO:0032302 "MutSbeta
complex" evidence=IDA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0019237 EMBL:AC008434 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0045910 MIM:608089
GO:GO:0008094 UniGene:Hs.648635 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0051096 PDB:3THW PDB:3THX PDB:3THY PDB:3THZ PDBsum:3THW
PDBsum:3THX PDBsum:3THY PDBsum:3THZ HOGENOM:HOG000029776 KO:K08736
EMBL:J04810 EMBL:U61981 EMBL:D61419 EMBL:AY275681 EMBL:AC010270
EMBL:AC022493 EMBL:BC011817 EMBL:BC130436 IPI:IPI00329605
PIR:A33507 RefSeq:NP_002430.3 UniGene:Hs.280987
ProteinModelPortal:P20585 SMR:P20585 DIP:DIP-35127N IntAct:P20585
MINT:MINT-192778 STRING:P20585 PhosphoSite:P20585 DMDM:229462953
PaxDb:P20585 PRIDE:P20585 Ensembl:ENST00000265081 GeneID:4437
KEGG:hsa:4437 UCSC:uc003kgz.3 CTD:4437 GeneCards:GC05P079986
H-InvDB:HIX0032037 HGNC:HGNC:7326 HPA:HPA036080 HPA:HPA036081
MIM:600887 neXtProt:NX_P20585 PharmGKB:PA31134 HOVERGEN:HBG006400
InParanoid:P20585 OMA:HYFELTV OrthoDB:EOG434W57 GenomeRNAi:4437
NextBio:17293 ArrayExpress:P20585 Bgee:P20585 CleanEx:HS_MSH3
Genevestigator:P20585 GermOnline:ENSG00000113318 GO:GO:0016447
Uniprot:P20585
Length = 1137
Score = 453 (164.5 bits), Expect = 7.3e-53, Sum P(3) = 7.3e-53
Identities = 129/438 (29%), Positives = 218/438 (49%)
Query: 340 VSQLPKLISILESLVQ--NVEASNLNT---ILSSLQSLKMMD-RKD---AVMDKMKEYLE 390
+ ++P+L+S +E ++ N +A+ + + L ++ RKD V+D+++ +L+
Sbjct: 672 ILEIPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVIDEIRMHLQ 731
Query: 391 STARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATAN 450
+ L + + + + S Q F I + I + + + + RF +
Sbjct: 732 EIRKILKNPSAQYVTV--SGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVE-- 787
Query: 451 TQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDV---LAQFDVLVSFSIASTCAPK 507
Y+ + + E E + +++ + L LA D + FS+A
Sbjct: 788 -NYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCI--FSLAKVAKQG 844
Query: 508 PYVRPCMKPMGTGSLVLNQCRHPIVELQGGVS--YIPNDVYFKSGEVSFNLVTGPNMGGK 565
Y RP ++ +V+ RHP++++ G Y+PN+ ++TGPNMGGK
Sbjct: 845 DYCRPTVQE--ERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGK 902
Query: 566 STYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATV 625
S+YI+ + + +AQIG +VP + ATI +VD IFTR+GAAD+ Y+G STFM E+ +TA +
Sbjct: 903 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEI 962
Query: 626 IKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALL----S 681
I+K T SLVI+DELGRGTST DG +A + + TLF TH+ + L S
Sbjct: 963 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 1022
Query: 682 RVIPTFR----------NVQVSALEQ-EDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDM 730
+ + + A EQ D + LYQ+ G +SYG++ AK+A P ++
Sbjct: 1023 HQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 1082
Query: 731 LEQARDLMKEYEYSLDTK 748
L++A KE E ++TK
Sbjct: 1083 LKKAAHKSKELEGLINTK 1100
Score = 181 (68.8 bits), Expect = 7.3e-53, Sum P(3) = 7.3e-53
Identities = 84/389 (21%), Positives = 166/389 (42%)
Query: 32 AELIQRKSNVVYLVKTM-GQKDKTLETV--LVNKSNL---SCFSHILCVISEDKTLETVL 85
+ L RK +Y T+ G+ L + VN + + S++LC+ + +
Sbjct: 323 SSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKK 382
Query: 86 TNTVGVAIVDLD--TKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNK---NK 140
+ + IV + T + D S LE + P E LLP+ + ++
Sbjct: 383 KGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSALSEQTEALIHR 442
Query: 141 IVTILDRNKVCMTGRKKNEFSE-EDLMQDVNRLVRFDDSELKNARLLPEMC-LTTATHC- 197
++ ++ R N + E Q V D ++K ++++ + L C
Sbjct: 443 ATSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICS 502
Query: 198 LRSLINYLELMNNEDNMNQFSIHSIDYSK--YVHMSSAVMSSLHVLPQQGSTSAQTYDSL 255
L ++I YL+ N E +++ SK ++ ++ + +L +L Q T +T SL
Sbjct: 503 LAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMTINGTTLRNLEIL--QNQTDMKTKGSL 560
Query: 256 LGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPD 315
L +LD +T G R L +W+ QPL L I R AV+ ++++ + E LR LPD
Sbjct: 561 LWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPD 620
Query: 316 MQSLAMRIGRKKAGLKDCYRVYEGVSQLP-KLISILESLVQNVEASNLNTILSSLQSLKM 374
++ I KK ++ + + + + L + +I+ ++ ++++ L T++ + L
Sbjct: 621 IERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQSDLLRTVILEIPEL-- 678
Query: 375 MDRKDAVMDKMKEYLESTARRLNLVADKT 403
+ ++ YL+ + V DKT
Sbjct: 679 -------LSPVEHYLKILNEQAAKVGDKT 700
Score = 41 (19.5 bits), Expect = 7.3e-53, Sum P(3) = 7.3e-53
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 25 YCVHGEDAELIQRKSNV 41
Y GEDAE+ R+ N+
Sbjct: 256 YRFFGEDAEIAARELNI 272
>TIGR_CMR|ECH_0824 [details] [associations]
symbol:ECH_0824 "DNA mismatch repair protein MutS"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_507620.1
ProteinModelPortal:Q2GG13 STRING:Q2GG13 GeneID:3926941
KEGG:ech:ECH_0824 PATRIC:20577070
BioCyc:ECHA205920:GJNR-827-MONOMER Uniprot:Q2GG13
Length = 804
Score = 495 (179.3 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 114/355 (32%), Positives = 193/355 (54%)
Query: 397 NLVADKTIK-LENSPQGFAYRITMKLNNSIDDRYTI-LDTVRGGVRFQDDRLATANTQYQ 454
N+ +++K L N+ G Y + + + I D+ I T+ +R+ L ++
Sbjct: 459 NITNIQSLKILYNNILG--YYVEVSSSYLISDKDFIHRQTLANSIRYTTSELKALESKII 516
Query: 455 AIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCM 514
+ + + I ++ + + +A+ D+L SF A Y +P +
Sbjct: 517 SARDAAINLEVKIFGQLCTCIIEVADKITMTAHAIAEIDMLTSF--AELAIQYSYTKPIV 574
Query: 515 KPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 574
+ + + RHP+VE G ++ ND+ + +L+TGPNM GKST++R +
Sbjct: 575 DD--SYEFNIKKGRHPVVERNG--KFVANDIDLSLMQ-RVHLITGPNMAGKSTFLRQNAL 629
Query: 575 SVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSL 634
LA IG FVP A I V+D++F+RVGA+D+ G STFM+EM ETA +I + T+ S
Sbjct: 630 IGILAHIGSFVPAQHAHIGVIDKVFSRVGASDNIASGHSTFMVEMTETAAIINQATDKSF 689
Query: 635 VIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSA 694
VI+DE+GRGT T+DG +A S+ ++ + + +FATH+HE++ L R + + +
Sbjct: 690 VILDEIGRGTGTYDGLSIAWSVIEQIHNVNKSRAIFATHYHELSKLDRYLENIKCFCMKV 749
Query: 695 LEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKT 749
E +V L+++ PGS KSYG+H AK+AG+P+ +L++A DLM + + + D T
Sbjct: 750 EEWNGKVVFLHEIIPGSTNKSYGIHVAKLAGFPQSVLDRAEDLMSKLKANEDLLT 804
Score = 120 (47.3 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 66/270 (24%), Positives = 116/270 (42%)
Query: 91 VAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKV 150
+A ++L T FY L++ + + +PKE L+ + + + I +IL + K
Sbjct: 142 IAWLELSTGLFYYHTTE----LHKLDSDLFRINPKEVLISDKLVE--LDSIYSILRKYKF 195
Query: 151 CMTGRKKNEFSEEDLMQDVNRLVR-FDDSELKNARLLPEMCLTTATHCLRSLINYLELMN 209
+T + F D+ + N L + S LK L ++ C SL+ Y++
Sbjct: 196 SVTQYSGSFF---DVSRSYNTLCNVYGISTLKG---LGDLKNEEIAVC-GSLLEYVKA-T 247
Query: 210 NEDNMNQFSIHSIDYSK--YVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQG 267
+ N+ Q YSK ++ + +A + +L + Q S SL+ +D T G
Sbjct: 248 QKGNLPQLEFPKA-YSKGDFMFIDAAALRNLELFCTQ---SGDLEGSLISSIDYTITACG 303
Query: 268 HRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKK 327
RLL + + PL AI R V VN+ + E LRG+ D++ + RI K
Sbjct: 304 GRLLKRCLSAPLACSHAINRRLDIVEFFVNDRTLCRGVRE-TLRGIADIERILTRIKVGK 362
Query: 328 AGLKDCYRVYEGVSQLPKLISILESLVQNV 357
KD Y + + ++ L+ +L +V
Sbjct: 363 CSPKDLYALKLTLDKIFVLLDLLHKFDSSV 392
>UNIPROTKB|P49849 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0030983
GO:GO:0008094 EMBL:U27343 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
GO:GO:0032300 KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 PIR:C69663
RefSeq:NP_389586.2 ProteinModelPortal:P49849 SMR:P49849
EnsemblBacteria:EBBACT00000003342 GeneID:939501 KEGG:bsu:BSU17040
PATRIC:18975215 GenoList:BSU17040 BioCyc:BSUB:BSU17040-MONOMER
Uniprot:P49849
Length = 858
Score = 556 (200.8 bits), Expect = 1.3e-52, Sum P(2) = 1.3e-52
Identities = 155/496 (31%), Positives = 255/496 (51%)
Query: 264 TPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEAR--MNLHEYALRGLPDMQSLAM 321
T H + +++ LK++ + ER A + N AR + L E +L+ +P ++ L
Sbjct: 314 TLMSHFFEREDLRERLKEVYDL-ERLAG-RVAFGNVNARDLIQLKE-SLKQVPGIKQLVA 370
Query: 322 RIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEAS-NLNTILSSLQSLKMMDRKDA 380
+ KA K+ + + + +L+ E+L +N S ++ + K+ + +DA
Sbjct: 371 SLAHDKA--KERAKRIDPCGDVLELLE--EALYENPPLSVKEGNLIKDGYNQKLDEYRDA 426
Query: 381 VMDKMKEY---LESTARRLNLVADKTIKLE-NSPQGFAYRITMKLNNSI--DDRYTILDT 434
+ K++ LE R + +++K+ N G+ +T K N + + RY T
Sbjct: 427 SRNG-KDWIARLEQQEREYTGI--RSLKVGFNKVFGYYIEVT-KANLHLLEEGRYERKQT 482
Query: 435 VRGGVRF-----QDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVL 489
+ R+ ++ + + EYE + + E+V Y L QL+ +
Sbjct: 483 LTNAERYITPELKEKEALILEAENNICELEYELFTE-LREKV----KQYIPRLQQLAKQM 537
Query: 490 AQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVE-LQGGVSYIPNDVYFK 548
++ D L F+ S + Y +P + + + RHP+VE + Y+PN+
Sbjct: 538 SELDALQCFATISE--NRHYTKP---EFSKDEVEVIEGRHPVVEKVMDSQEYVPNNCMMG 592
Query: 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQ 608
L+TGPNM GKSTY+R I + +AQIGCFVP A + + DQIFTR+GAAD
Sbjct: 593 DNRQML-LITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFTRIGAADDL 651
Query: 609 YRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFT 668
G STFM+EM E I T+NSL++ DE+GRGTST+DG +A +I + H T
Sbjct: 652 ISGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKT 711
Query: 669 LFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPE 728
LF+TH+HE+ +L +P +NV V A E +V L+Q+K G+ KSYG+H A++A P
Sbjct: 712 LFSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPG 771
Query: 729 DMLEQARDLMKEYEYS 744
D++ +A+D++KE E+S
Sbjct: 772 DLIARAQDILKELEHS 787
Score = 135 (52.6 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 33/103 (32%), Positives = 57/103 (55%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGL 313
SLL +LD +T G RLL QW+ +PL ++ I ER V L+++ R +L E L+ +
Sbjct: 274 SLLWLLDETKTAMGGRLLKQWIDRPLIRVNQIEERQEMVETLMSHFFEREDLRE-RLKEV 332
Query: 314 PDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQN 356
D++ LA R+ +D ++ E + Q+P + ++ SL +
Sbjct: 333 YDLERLAGRVAFGNVNARDLIQLKESLKQVPGIKQLVASLAHD 375
Score = 49 (22.3 bits), Expect = 1.3e-52, Sum P(2) = 1.3e-52
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 98 TKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNK---IVTILDRNKVCMTG 154
T+K + + Y EA+ + K L E + +KNK ++ +LD K M G
Sbjct: 230 TQKRSLDHLQPVQVYELEEAMKIDLYSKRNLELTETIR-SKNKKGSLLWLLDETKTAMGG 288
Query: 155 RKKNEFSEEDLMQDVNRL 172
R ++ + L++ VN++
Sbjct: 289 RLLKQWIDRPLIR-VNQI 305
Score = 38 (18.4 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 688 RNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAK-MAGYPEDMLEQARDLMKEYEYSL- 745
+N V+A + ++L+L ++ G+ G+ A+ + Y D + A+ L + + L
Sbjct: 666 KNAIVNATK--NSLILFDEIGRGTSTYD-GMALAQAIIEYVHDHIG-AKTLFSTHYHELT 721
Query: 746 --DTKTPSGDETNNREEEYFKTV 766
+ K P + R EEY TV
Sbjct: 722 VLEDKLPQLKNVHVRAEEYNGTV 744
>UNIPROTKB|Q89VX1 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224911 "Bradyrhizobium japonicum USDA 110" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000040 GenomeReviews:BA000040_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:NP_767564.1
ProteinModelPortal:Q89VX1 GeneID:1049823 KEGG:bja:bll0924
PATRIC:21185344 BioCyc:BJAP224911:GJEJ-933-MONOMER Uniprot:Q89VX1
Length = 912
Score = 481 (174.4 bits), Expect = 2.8e-52, Sum P(4) = 2.8e-52
Identities = 129/361 (35%), Positives = 196/361 (54%)
Query: 402 KTIKLE-NSPQGFAYRITM----KLNNS-IDDRYTILDTVRGGVRFQDDRLAT-----AN 450
K +K+ N+ G+ +T KL ++ ++ + T+ G +RF L AN
Sbjct: 495 KGLKIRHNNVLGYFVEVTAQHGDKLMSAPLNATFIHRQTLAGQIRFTTSELGEIEAKIAN 554
Query: 451 TQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYV 510
+A+ E E ++ + + + IS L + A DV S +A + YV
Sbjct: 555 AGDRALGLELEIFER-LCAKALEIS----DDLRAAAQGFALLDVATS--LAKLAVDENYV 607
Query: 511 RPCMKPMGTGSLVLNQCRHPIVEL---QGGVSYIPN--DVY----FKSGEVSFNLVTGPN 561
RP + G + RHP+VE + G +I N D+ KSG++ L+TGPN
Sbjct: 608 RPEVDS-SLG-FAIEAGRHPVVEQALKRNGEPFIANACDLSPAPAQKSGQLW--LLTGPN 663
Query: 562 MGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKE 621
M GKST++R + LAQIG FVP A I ++D++F+RVGAAD RG STFM+EM E
Sbjct: 664 MAGKSTFLRQNALIALLAQIGSFVPATRARIGIIDRLFSRVGAADDLARGRSTFMVEMVE 723
Query: 622 TATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLS 681
TA ++ + E +LVI+DE+GRGT+TFDG +A + L + TLFATH+HE+ LS
Sbjct: 724 TAAILNQAGERALVILDEIGRGTATFDGLSIAWAAIEHLHESNRCRTLFATHYHELTALS 783
Query: 682 RVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEY 741
+P N V E + N+V L++V PGS +SYG+ AK+AG P ++ +A+ ++ +
Sbjct: 784 AKLPRMFNATVRVKEWQGNVVFLHEVLPGSADRSYGIQVAKLAGLPPAVITRAKSVLAKL 843
Query: 742 E 742
E
Sbjct: 844 E 844
Score = 123 (48.4 bits), Expect = 2.8e-52, Sum P(4) = 2.8e-52
Identities = 35/102 (34%), Positives = 51/102 (50%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGL 313
SLL +D T G RLLAQ + PL D AI R AV V ++ AR ++ LRG
Sbjct: 318 SLLDAIDCTVTSAGSRLLAQRLAAPLTDAPAIARRLDAVGAFVADSAAREDIRSI-LRGA 376
Query: 314 PDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQ 355
PDM R+ + G +D + +G+ ++++ L L Q
Sbjct: 377 PDMSRALARLSVGRGGPRDLAGLRDGIIAADQVLARLGELDQ 418
Score = 51 (23.0 bits), Expect = 2.8e-52, Sum P(4) = 2.8e-52
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 90 GVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNK 138
G+A +D+ T +F + E + L A + + +P E ++ NDN+
Sbjct: 170 GLAWIDISTAEFMVTECSGGE----LAATLARINPNEAIVTDALYNDNE 214
Score = 40 (19.1 bits), Expect = 2.8e-52, Sum P(4) = 2.8e-52
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 18 FFNRVEFYCVHGEDAELIQRKSNVV 42
F+ +FY + EDAE+ + +V
Sbjct: 46 FYRMGDFYELFFEDAEIASKTLGIV 70
>UNIPROTKB|Q3KKQ0 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:315277 "Chlamydia trachomatis A/HAR-13" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:CP000051 GenomeReviews:CP000051_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_328620.1
ProteinModelPortal:Q3KKQ0 STRING:Q3KKQ0 GeneID:3687872
KEGG:cta:CTA_0862 PATRIC:32023672
BioCyc:CTRA315277:GI4C-873-MONOMER Uniprot:Q3KKQ0
Length = 820
Score = 501 (181.4 bits), Expect = 2.8e-52, Sum P(2) = 2.8e-52
Identities = 107/306 (34%), Positives = 174/306 (56%)
Query: 440 RFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFS 499
RF L + +++ + +T + + +E+ + + +LS +A D +VS
Sbjct: 502 RFTTQELQQFQDEVFSVEDKLQTLETKLFKELCFYIVEHRDLILKLSTAVADLDYVVS-- 559
Query: 500 IASTCAPKPYVRPCMKPMGTGSLVLNQCRHPI-VELQGGVSYIPNDVYFKSGEVSFNLVT 558
+A A Y RP + + +L + + HP+ + L ++IPND S + L+T
Sbjct: 560 LAELAAEYDYRRPLVDH--SDALSITKGMHPVALTLLDKGTFIPNDTVMHSAQTRMILLT 617
Query: 559 GPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMME 618
GPNM GKSTYIR I + V +AQ+G F+P SA I +VD+IFTR+GA D+ +G+STFM+E
Sbjct: 618 GPNMAGKSTYIRQIALLVIMAQMGSFIPARSAHIGIVDKIFTRIGAGDNLSKGMSTFMVE 677
Query: 619 MKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAREL--ASHRQPFTLFATHFHE 676
M ETA ++ T+ SLVI+DE+GRGTST+DG +A ++ L ++ TLFATH+ E
Sbjct: 678 MAETANILHNATDRSLVILDEIGRGTSTYDGLAIAQAVVEFLLFTDGKKAKTLFATHYKE 737
Query: 677 IALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARD 736
+ L N E + +Y++ G KS+G+H AK+AG+P ++ +A+
Sbjct: 738 LTELEMHCQHVENFHAMVKENSGQPIFMYEIVKGHSKKSFGIHVAKLAGFPLSVVSRAQQ 797
Query: 737 LMKEYE 742
++ ++E
Sbjct: 798 ILHQFE 803
Score = 110 (43.8 bits), Expect = 2.8e-52, Sum P(2) = 2.8e-52
Identities = 58/246 (23%), Positives = 105/246 (42%)
Query: 90 GVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNK 149
G++ +DL F + E D+ +EAI + +P E L A++ N+ I + +
Sbjct: 134 GLSCLDLSIGTFLVAEY--DNTKDLIEAIC-RLAPTELLSHAKFYQKNEAVIKQLQQHLR 190
Query: 150 VCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLE--L 207
+ ++ F + + + F S L L L A + +L++Y++ L
Sbjct: 191 ITLSEYVSWAFEYQSATKKLYTC--FQVSSLDGFGL---QGLVPAINAAGALLSYIQDKL 245
Query: 208 MNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVL-PQQGSTSAQTYDSLLGILDRCRTPQ 266
+ +++ I+ K++ + A ++L +L P G SLL +++R TP
Sbjct: 246 LLPISHLSIPKIYG--QQKHLLIDKASQTNLELLSPIHGE---HRKGSLLQVMERTSTPM 300
Query: 267 GHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRK 326
G RLL + P DL I R +V + + R L L + D++ LA +I
Sbjct: 301 GGRLLRNTLINPFYDLKEITLRQDSVEFFLQQADLRKILKRQ-LSCVRDLERLATKISTS 359
Query: 327 KAGLKD 332
A KD
Sbjct: 360 LATPKD 365
>UNIPROTKB|Q8TTB4 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:188937 "Methanosarcina acetivorans C2A" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE010299 GenomeReviews:AE010299_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_615487.1 ProteinModelPortal:Q8TTB4
GeneID:1472415 KEGG:mac:MA0523 BioCyc:MACE188937:GI2O-590-MONOMER
Uniprot:Q8TTB4
Length = 900
Score = 551 (199.0 bits), Expect = 4.6e-52, Sum P(2) = 4.6e-52
Identities = 149/558 (26%), Positives = 281/558 (50%)
Query: 271 LAQWMKQPLKDLDAIVERHAAVNILVNNTEAR-MNLHEYALRGLPDMQSLAMRIGRKKAG 329
+ W+ ++D++ +V R I+ N AR + + +L +P ++ + R +
Sbjct: 356 IRDWLSD-VRDIERLVGR-----IVYGNASARDLVALKKSLGVVPSLRDSLLEKARFEM- 408
Query: 330 LKDCYRVYEGVSQLPKLISILESLVQNVEASNLNT--ILSSLQSLKMMDRKDAVMDKMKE 387
LK+ S+L +L ++E + + ++ ++ S S ++ + +D + K+
Sbjct: 409 LKEIAEGLASFSELEELAEMIEIAIMDEPPVSVREGGMIKSGYSPELDELRD-ISSNSKQ 467
Query: 388 YLESTARRLNLVAD-KTIKLE-NSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRF---- 441
++ + ++ + K++K+ N G+ +T ++ + + Y T+ RF
Sbjct: 468 WIAAFQQKERERSGIKSLKVGYNKVFGYYIEVTHANSSQVPEDYIRKQTMANAERFFTPE 527
Query: 442 ---QDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSF 498
++ + TAN + A+ EYE I E+ + ++ L + ++ + DVL S
Sbjct: 528 LKEKESLILTANEK--AVALEYE-----IFAEITRTLSARSRELQETAERIGTLDVLAS- 579
Query: 499 SIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVT 558
+A Y RP + +++ RHP+VE ++PND E F LVT
Sbjct: 580 -LAEATENNNYTRPQLTE--DCKILIRDGRHPVVESTVSGGFVPNDTEMDCKENQFLLVT 636
Query: 559 GPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMME 618
GPNM GKSTY+R + +AQ+G FVP A++ ++DQ+FTR+GA D G STFM+E
Sbjct: 637 GPNMAGKSTYMRQTALIAIMAQVGSFVPASYASVGIIDQVFTRIGAFDDLASGQSTFMVE 696
Query: 619 MKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPF--TLFATHFHE 676
M E A ++ + SLV++DE+GRGTST+DG+ +A ++ L + + LFATH+H+
Sbjct: 697 MVELANILNNASPKSLVLLDEIGRGTSTYDGYSIAKAVVEFLHNRGKVGIRALFATHYHQ 756
Query: 677 IALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARD 736
+ L + +N ++ E LV L ++ PG+ +SYG+H A++AG PE ++E+A +
Sbjct: 757 LTALEEKLKRVKNYHIAVKEDGHELVFLRKIVPGATDRSYGIHVARLAGVPEKVIERANE 816
Query: 737 LMKEYEYSLDTKTPSGDETNNREEEYFKTVQEGEYQMFDFLQQCLSLSKQKDTNRI-LHL 795
++KE E + + D N ++++ T + + +FD S K K + + L
Sbjct: 817 ILKELERE-NVLEEAEDGENGKKKKSKATARYTQMLLFDPGSGSRSSEKAKGLSPVEAAL 875
Query: 796 QETQEPGIEEYQSFDKVH 813
++ + ++ +K+H
Sbjct: 876 KKVNPDEMTPIEALNKLH 893
Score = 148 (57.2 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 55/287 (19%), Positives = 124/287 (43%)
Query: 90 GVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNK 149
G++ +D+ T +F + D + + L + + + P EC+LP +++ +T R
Sbjct: 151 GISFLDISTGEFLTTQFTDSENFDKLLSELARMHPAECILPPSLYGNSE---LTGKLREH 207
Query: 150 VCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELMN 209
+ F E+ + + F + L+ L A + + + Y +
Sbjct: 208 TIVQEFAPEVFGTEEAGEKLK--THFGVATLEGMGCQK---LEFAVYSAWAALEYAKTTQ 262
Query: 210 NEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHR 269
D + ++ + ++++ + S + +L ++ + +SL L+ RTP G+R
Sbjct: 263 MRDLTHINTLRTYSNTEFMILDSITLRNLEIVKNVRDEGDE--NSLYRTLNCTRTPMGNR 320
Query: 270 LLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAG 329
L +W+ +PL ++ I R A+ L ++ R ++ ++ L + D++ L RI A
Sbjct: 321 TLKKWLLKPLLSVEKINPRLDAIEELAEDSLLRYDIRDW-LSDVRDIERLVGRIVYGNAS 379
Query: 330 LKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLKMMD 376
+D + + + +P S+ +SL++ L I L S ++
Sbjct: 380 ARDLVALKKSLGVVP---SLRDSLLEKARFEMLKEIAEGLASFSELE 423
Score = 53 (23.7 bits), Expect = 4.6e-52, Sum P(2) = 4.6e-52
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 15 TIRFFNRVEFYCVHGEDAELIQRKSNVVYLVKTMGQKDKTLE 56
T+ FF +FY GEDA+ I ++ + + G KD+T E
Sbjct: 22 TLIFFRMGDFYESFGEDAKTIAKELEITLTAR--G-KDRTGE 60
>UNIPROTKB|F1P9S9 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:KRTKSIY
GeneTree:ENSGT00550000074949 EMBL:AAEX03002106
Ensembl:ENSCAFT00000013983 Uniprot:F1P9S9
Length = 1058
Score = 453 (164.5 bits), Expect = 8.1e-52, Sum P(3) = 8.1e-52
Identities = 132/444 (29%), Positives = 220/444 (49%)
Query: 332 DCYRVYEGVSQLPKLISILESLVQ--NVEASNLNT---ILSSLQSLKMMD-RKDAVM--- 382
D R + + ++P+L+S +E ++ N +A+ + + L ++ RKD +
Sbjct: 589 DLLRTF--ILEIPELLSPVEHYLRILNEQAAKIGDKTELFKDLTDFPLIKKRKDEIQEVT 646
Query: 383 DKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQ 442
DK++ +L+ + L + + + + S Q F I + I + + + + RF
Sbjct: 647 DKIQMHLQEIRKILKNPSLQYVTV--SGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFH 704
Query: 443 DDRLATANTQYQAIQREYETHQQSI--VEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSI 500
+ N ++ RE S ++ + SA Y +L + LA D + FS+
Sbjct: 705 SPFIVE-NYRHLNQLREQLVLDCSAEWLDFLENFSAHY-HSLCKAVHHLATVDCI--FSL 760
Query: 501 ASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVS--YIPNDVYFKSGEVSFNLVT 558
A Y RP ++ +V+ RHP++++ G Y+PN ++T
Sbjct: 761 AKVAKQGDYCRPSLQE--ERKIVIKNGRHPVIDVLLGEQDQYVPNSTNLSGDSERVMIIT 818
Query: 559 GPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMME 618
GPNMGGKS+YI+ + + +AQIG +VP + ATI +VD IFTR+GAAD+ Y+G STFM E
Sbjct: 819 GPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEE 878
Query: 619 MKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA 678
+ +TA +I++ T SLVI+DELGRGTST DG +A + + TLF TH+ +
Sbjct: 879 LMDTAEIIRQATSQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVC 938
Query: 679 LLSR-VIPTFRNVQVSALEQEDN-------------LVLLYQVKPGSCVKSYGVHCAKMA 724
L + + N + L ED + LYQ+ G +SYG++ AK+A
Sbjct: 939 ELEKSYLQEVGNYHMGFLVNEDENKEDPGEEPVPDFVTFLYQITRGIAARSYGLNVAKLA 998
Query: 725 GYPEDMLEQARDLMKEYEYSLDTK 748
P ++L++A KE E ++ K
Sbjct: 999 DVPGEILKKAASKSKELEGLVNMK 1022
Score = 169 (64.5 bits), Expect = 8.1e-52, Sum P(3) = 8.1e-52
Identities = 83/363 (22%), Positives = 155/363 (42%)
Query: 32 AELIQRKSNVVYLVKTM-GQKDKTLETV--LVNKSNL---SCFSHILCVISEDKTLETVL 85
+ L RK +Y T+ G+ L + +N + + S +LC+ ++ ++
Sbjct: 246 SSLFSRKLTALYTKSTLIGEDVNPLVKLDDAINVDEVMTDTSTSFLLCICENEENVKDKK 305
Query: 86 TNTVGVAIVDLD--TKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIV- 142
+ + IV + T + D S LE I+ P E LLP+ L++ +V
Sbjct: 306 KGNIFIGIVGVQPVTGEVVFDSFQDSASRSELETRILCLQPVEMLLPSR-LSEQTETLVH 364
Query: 143 --TILD-RNKVCMTGRKKNEFSE-EDLMQDVNRLVRFDDSELKNARLLPEMC-LTTATHC 197
T R+ R N + E Q V D +++ ++ + L C
Sbjct: 365 RATAASVRDDRIRVERMDNVYFEYSHAFQAVTEFYAKDAVDIQASQSFSGIINLEKPVIC 424
Query: 198 -LRSLINYLELMNNED------NMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQ 250
L ++I YL+ N E N QFS +++ ++ + +L +L Q T +
Sbjct: 425 SLAAVIRYLKEFNLEKVLSKPKNFKQFS----GEMEFMTINGTTLRNLEIL--QNQTDMK 478
Query: 251 TYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYAL 310
T SLL +LD +T G R L +W+ QPL L I R AV+ ++++ + E L
Sbjct: 479 TKGSLLWVLDHTKTSFGRRKLKKWVVQPLLKLREINARLDAVSEVLHSESSVFGQIENHL 538
Query: 311 RGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLP-KLISILESLVQNVEASNLNTILSSL 369
R LPD++ I KK ++ + + + + L + +++ ++ +V++ L T + +
Sbjct: 539 RKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQALIPAVNSHVQSDLLRTFILEI 598
Query: 370 QSL 372
L
Sbjct: 599 PEL 601
Score = 41 (19.5 bits), Expect = 8.1e-52, Sum P(3) = 8.1e-52
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 25 YCVHGEDAELIQRKSNV 41
Y GEDAE+ R+ N+
Sbjct: 179 YRFFGEDAEIAARELNI 195
>UNIPROTKB|E1BYJ2 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00822608
Ensembl:ENSGALT00000039625 ArrayExpress:E1BYJ2 Uniprot:E1BYJ2
Length = 1341
Score = 464 (168.4 bits), Expect = 1.6e-51, Sum P(3) = 1.6e-51
Identities = 105/271 (38%), Positives = 161/271 (59%)
Query: 489 LAQFDVLVSFSIASTCAPKPYVRPC-MKPMGTGS--LVLNQCRHP-IVELQGGVSYIPND 544
+A DVL+S + S P RP + P+ + L L RHP I + G +IPND
Sbjct: 1035 IAVLDVLMSLANYSQDGDGPLCRPVILLPVDSAPPFLELKNARHPCITKTFFGDDFIPND 1094
Query: 545 VYFKS------GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQI 598
+ S E S LVTGPNMGGKST +R G+ V +AQ+GC+VP + ++ +D++
Sbjct: 1095 IVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRV 1154
Query: 599 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAR 658
FTR+GA+D G STF +E+ ET+++++ TE+SLV++DELGRGT+TFDG +A ++ R
Sbjct: 1155 FTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVR 1214
Query: 659 ELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL---EQED----NLVLLYQVKPGS 711
ELA + + TLF+TH+H + R ++ + E ED + LY+ G+
Sbjct: 1215 ELAENIKCRTLFSTHYHSLVEDYSGSAAVRLGHMACMVENESEDPSQETITFLYKFIEGA 1274
Query: 712 CVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
C KSYG + A++A PE+++++ KE+E
Sbjct: 1275 CPKSYGFNAARLADIPEEIIQKGHRKAKEFE 1305
Score = 119 (46.9 bits), Expect = 1.6e-51, Sum P(3) = 1.6e-51
Identities = 45/162 (27%), Positives = 78/162 (48%)
Query: 230 MSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERH 289
+ + +L VL Q T+ T +LL +D C TP G RLL QW+ PL + +I +R
Sbjct: 716 LDGVTLMNLEVL--QNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPTSINDRL 773
Query: 290 AAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLK-----DCYRV-YEGVSQL 343
AV L+ + E+ L+ LPD++ L +I + LK D + YE +
Sbjct: 774 DAVEDLLAVPAKLTEITEH-LKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKYS 832
Query: 344 PKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKM 385
K I+ S ++ + +N I+ +++ + D K V+ ++
Sbjct: 833 KKKIADFLSALEGFKV--MNEIVDAMEEVAS-DFKSQVLKQL 871
Score = 82 (33.9 bits), Expect = 1.6e-51, Sum P(3) = 1.6e-51
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 70 HILCVIS-EDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECL 128
++LCV ED + + V GV VD KFY+G+ DD + S ++ +P + L
Sbjct: 521 YLLCVKEKEDSSGQRVY----GVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVL 576
Query: 129 LPAEYLNDNKNKIV 142
L + KI+
Sbjct: 577 FEKGNLTVDTQKIL 590
Score = 46 (21.3 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 22/99 (22%), Positives = 42/99 (42%)
Query: 421 LNNSIDDRYTILDTV-RGGVRFQDDRLATANTQYQA----IQREYETHQQSIVEEVIGIS 475
L ++ + ++D + RG F +A+A + A + + TH S+VE+ G +
Sbjct: 1182 LQHATEHSLVLVDELGRGTATFDGTAIASAVVRELAENIKCRTLFSTHYHSLVEDYSGSA 1241
Query: 476 A---GYTQTL--NQLSDVLAQFDVLVSFSIASTCAPKPY 509
A G+ + N+ D +Q + + PK Y
Sbjct: 1242 AVRLGHMACMVENESEDP-SQETITFLYKFIEGACPKSY 1279
Score = 38 (18.4 bits), Expect = 4.6e-43, Sum P(3) = 4.6e-43
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 325 RKKAGLKDCYR 335
R+ A LKDC R
Sbjct: 1005 RRDAALKDCMR 1015
>UNIPROTKB|E1BWV7 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000400 "four-way
junction DNA binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0032143 "single thymine insertion binding" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032405 "MutLalpha complex
binding" evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] [GO:0051096
"positive regulation of helicase activity" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0000287
GO:GO:0043531 GO:GO:0003682 GO:GO:0016887 GO:GO:0006298
GO:GO:0000790 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00571940
Ensembl:ENSGALT00000014567 ArrayExpress:E1BWV7 Uniprot:E1BWV7
Length = 1357
Score = 464 (168.4 bits), Expect = 1.8e-51, Sum P(3) = 1.8e-51
Identities = 105/271 (38%), Positives = 161/271 (59%)
Query: 489 LAQFDVLVSFSIASTCAPKPYVRPC-MKPMGTGS--LVLNQCRHP-IVELQGGVSYIPND 544
+A DVL+S + S P RP + P+ + L L RHP I + G +IPND
Sbjct: 1051 IAVLDVLMSLANYSQDGDGPLCRPVILLPVDSAPPFLELKNARHPCITKTFFGDDFIPND 1110
Query: 545 VYFKS------GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQI 598
+ S E S LVTGPNMGGKST +R G+ V +AQ+GC+VP + ++ +D++
Sbjct: 1111 IVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRV 1170
Query: 599 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAR 658
FTR+GA+D G STF +E+ ET+++++ TE+SLV++DELGRGT+TFDG +A ++ R
Sbjct: 1171 FTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVR 1230
Query: 659 ELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL---EQED----NLVLLYQVKPGS 711
ELA + + TLF+TH+H + R ++ + E ED + LY+ G+
Sbjct: 1231 ELAENIKCRTLFSTHYHSLVEDYSGSAAVRLGHMACMVENESEDPSQETITFLYKFIEGA 1290
Query: 712 CVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
C KSYG + A++A PE+++++ KE+E
Sbjct: 1291 CPKSYGFNAARLADIPEEIIQKGHRKAKEFE 1321
Score = 119 (46.9 bits), Expect = 1.8e-51, Sum P(3) = 1.8e-51
Identities = 45/162 (27%), Positives = 78/162 (48%)
Query: 230 MSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERH 289
+ + +L VL Q T+ T +LL +D C TP G RLL QW+ PL + +I +R
Sbjct: 732 LDGVTLMNLEVL--QNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPTSINDRL 789
Query: 290 AAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLK-----DCYRV-YEGVSQL 343
AV L+ + E+ L+ LPD++ L +I + LK D + YE +
Sbjct: 790 DAVEDLLAVPAKLTEITEH-LKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKYS 848
Query: 344 PKLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKM 385
K I+ S ++ + +N I+ +++ + D K V+ ++
Sbjct: 849 KKKIADFLSALEGFKV--MNEIVDAMEEVAS-DFKSQVLKQL 887
Score = 82 (33.9 bits), Expect = 1.8e-51, Sum P(3) = 1.8e-51
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 70 HILCVIS-EDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECL 128
++LCV ED + + V GV VD KFY+G+ DD + S ++ +P + L
Sbjct: 537 YLLCVKEKEDSSGQRVY----GVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVL 592
Query: 129 LPAEYLNDNKNKIV 142
L + KI+
Sbjct: 593 FEKGNLTVDTQKIL 606
Score = 46 (21.3 bits), Expect = 3.5e-06, Sum P(3) = 3.5e-06
Identities = 22/99 (22%), Positives = 42/99 (42%)
Query: 421 LNNSIDDRYTILDTV-RGGVRFQDDRLATANTQYQA----IQREYETHQQSIVEEVIGIS 475
L ++ + ++D + RG F +A+A + A + + TH S+VE+ G +
Sbjct: 1198 LQHATEHSLVLVDELGRGTATFDGTAIASAVVRELAENIKCRTLFSTHYHSLVEDYSGSA 1257
Query: 476 A---GYTQTL--NQLSDVLAQFDVLVSFSIASTCAPKPY 509
A G+ + N+ D +Q + + PK Y
Sbjct: 1258 AVRLGHMACMVENESEDP-SQETITFLYKFIEGACPKSY 1295
Score = 38 (18.4 bits), Expect = 4.9e-43, Sum P(3) = 4.9e-43
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 325 RKKAGLKDCYR 335
R+ A LKDC R
Sbjct: 1021 RRDAALKDCMR 1031
>UNIPROTKB|F1LQM8 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1563954 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08736 CTD:4437
GeneTree:ENSGT00550000074949 IPI:IPI00196502 RefSeq:NP_001178886.1
UniGene:Rn.162551 Ensembl:ENSRNOT00000018449 GeneID:499505
KEGG:rno:499505 NextBio:703076 ArrayExpress:F1LQM8 Uniprot:F1LQM8
Length = 1105
Score = 449 (163.1 bits), Expect = 2.2e-50, Sum P(3) = 2.2e-50
Identities = 104/279 (37%), Positives = 154/279 (55%)
Query: 481 TLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVS- 539
TL + D LA D + FS+A Y RP ++ +++ RHP++++ G
Sbjct: 778 TLCKAVDHLATVDCI--FSLAKVAKQGSYCRPTLQE--EKKIIIKNGRHPMIDVLLGEQD 833
Query: 540 -YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQI 598
++PN ++TGPNMGGKS+YI+ + + V +AQIG +VP + ATI +VD I
Sbjct: 834 QFVPNSTNLSQDSERVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGI 893
Query: 599 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAR 658
FTR GAAD+ Y+G STFM E+ +TA +I+K T+ SLVI+DELGRGTST DG +A +
Sbjct: 894 FTRRGAADNIYKGRSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLE 953
Query: 659 ELASHRQPFTLFATHFHEIALLSRVIPT-FRNVQVSALEQED--------------NLVL 703
+ TLF TH+ + L + P N + L ED ++
Sbjct: 954 YFIRDVKSLTLFVTHYPPVCELEKRYPEQVGNYHMGFLVNEDGSKQDSGDMEQMPDSVTF 1013
Query: 704 LYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
LYQ+ G +SYG++ AK+A P ++L++A KE E
Sbjct: 1014 LYQITRGIAARSYGLNVAKLADVPREILQKAAHKSKELE 1052
Score = 161 (61.7 bits), Expect = 2.2e-50, Sum P(3) = 2.2e-50
Identities = 74/350 (21%), Positives = 150/350 (42%)
Query: 69 SHILCVISEDKTLETVLTNTVGVAIVDLD--TKKFYMGEIPDDDYYSNLEAIIVQKSPKE 126
+++LC+ E + ++ + IV + T + D LE P E
Sbjct: 324 NYLLCIYEEKENIKDKKKGNISFGIVGVQPATGEVVFDCFQDSASRLELETRTASLQPVE 383
Query: 127 CLLPAEYLNDNKNKI-----VTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELK 181
LLP++ + I V++ D +++ + F Q V + + +
Sbjct: 384 LLLPSQLSEPTEMLIRRATAVSVGD-DRIRVERMNNTHFEYSHAFQTVMEFYARETVDTQ 442
Query: 182 NARLLPEMC-LTTATHC-LRSLINYLE------LMNNEDNMNQFSIHSIDYSKYVHMSSA 233
++ L + L C L ++I YL+ +++ +N Q S +++ ++
Sbjct: 443 GSQSLSGVIHLEKPVICALAAIIRYLKEFNLDKVLSKPENFKQLS----SGMEFMRINGT 498
Query: 234 VMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVN 293
+ +L +L Q T +T SLL +LD +T G R L +W+ QPL L I R A++
Sbjct: 499 TLRNLEIL--QNQTDMKTRGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLRDINARLDAIS 556
Query: 294 ILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESL 353
++++ + E LR LPD++ I KK ++ + + + + QL S L++L
Sbjct: 557 DVLHSESSVFEQIENLLRKLPDVERGLCSIYHKKCSTQEFFLIVKNLCQLK---SELQAL 613
Query: 354 VQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKT 403
+ V + + S L ++++ + ++ ++ YL+ + DKT
Sbjct: 614 MPAVNSH----VQSDLLRARVLEVPE-LLSPVEPYLKVLNEQAAKAGDKT 658
Score = 49 (22.3 bits), Expect = 1.0e-38, Sum P(3) = 1.0e-38
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 148 NKVCMTGRKKNE-FSEEDLM-QDVNRLVRFDDS 178
NK + RK +++ L+ +DVN L+R DDS
Sbjct: 279 NKSSVFSRKLTALYTKSTLIGEDVNPLIRLDDS 311
Score = 41 (19.5 bits), Expect = 2.2e-50, Sum P(3) = 2.2e-50
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 25 YCVHGEDAELIQRKSNV 41
Y GEDAE+ R+ N+
Sbjct: 214 YRFFGEDAEIAARELNI 230
>UNIPROTKB|A6V1G8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
EMBL:CP000744 GenomeReviews:CP000744_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_001346903.1
ProteinModelPortal:A6V1G8 SMR:A6V1G8 STRING:A6V1G8 GeneID:5355863
KEGG:pap:PSPA7_1519 PATRIC:19824849
BioCyc:PAER381754:GHMY-1583-MONOMER Uniprot:A6V1G8
Length = 855
Score = 537 (194.1 bits), Expect = 3.2e-50, Sum P(2) = 3.2e-50
Identities = 164/552 (29%), Positives = 271/552 (49%)
Query: 205 LELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQT-YDSLLGILDRCR 263
LEL N + ++ S+ M+S +MS P + + +S+ +L+R R
Sbjct: 274 LELDINLSGGRENTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLEARQESIACLLERYR 333
Query: 264 TPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRI 323
L +K+ + DL+ I+ R N + AR+ AL LPD+Q+ +
Sbjct: 334 FEN----LQPQLKE-IGDLERILARIGLRNARPRDL-ARLR---DALAALPDLQNAMTEL 384
Query: 324 GRKKAGLKDCYRVYEGVSQLPKLISIL-ESLVQNVEASNLNTILSSLQSLKMMDRKDAVM 382
+ L+ + + P+L +L ++++ N A + + +D A+
Sbjct: 385 --EAPHLQ---ALATTIGTYPELAELLAKAIIDNPPAVIRDGGVIKTGYDAELDELQALS 439
Query: 383 DKMKEYL-ESTARRLNLVADKTIKLE-NSPQGFAYRITMKLNNSIDDRYTILDTVRGGVR 440
+ ++L + AR +K+ N G+ + Y T++G R
Sbjct: 440 ENAGQFLMDLEAREKARTGLPNLKVGYNRIHGYFIELPRVQAEQAPADYIRRQTLKGAER 499
Query: 441 FQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSI 500
F L + + Q ++++ EE++ G+ L + LA+ DVL + +
Sbjct: 500 FITPELKAFEDKALSAQSRALAREKALYEELLERLIGHLAPLQDSASALAELDVLAN--L 557
Query: 501 ASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGP 560
A RP + + L + Q RHP+VE ++ ND+ + + ++TGP
Sbjct: 558 AERALNLDLNRP--RFVEHTCLHIEQGRHPVVEQVLETPFVANDLALDA-DTRMLVITGP 614
Query: 561 NMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMK 620
NMGGKSTY+R + V LA IG FVP +S+VD+IFTR+G++D G STFM+EM
Sbjct: 615 NMGGKSTYMRQTALIVLLAHIGSFVPAARCELSLVDRIFTRIGSSDDLAGGRSTFMVEMS 674
Query: 621 ETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALL 680
ETA ++ T+ SLV++DE+GRGTSTFDG +A + A +LA R FTLFATH+ E+ +L
Sbjct: 675 ETANILHNATDKSLVLMDEVGRGTSTFDGLSLAWAAAEDLARTRA-FTLFATHYFELTVL 733
Query: 681 SRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKE 740
P NV ++A E + +V L+ V PG +SYG+ A++AG P ++++AR+ +K
Sbjct: 734 PESQPAVANVHLNATEHNERIVFLHHVLPGPASQSYGLAVAQLAGVPSPVIQRAREHLKR 793
Query: 741 YEY-SLDTKTPS 751
E SL + PS
Sbjct: 794 LETTSLPHEVPS 805
Score = 50 (22.7 bits), Expect = 3.2e-50, Sum P(2) = 3.2e-50
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 78 DKTLETVLTNT--VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEY 133
D L +L + G+A++D+ + +F + EI + L A + + +P E L+P ++
Sbjct: 127 DNLLAAILGDERLFGLAVLDITSGRFSVQEIKG---WETLLAELERLNPAELLIPDDW 181
>ASPGD|ASPL0000012704 [details] [associations]
symbol:AN3749 species:162425 "Emericella nidulans"
[GO:0061500 "gene conversion at mating-type locus, termination of
copy-synthesis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 464 (168.4 bits), Expect = 5.4e-50, Sum P(2) = 5.4e-50
Identities = 106/286 (37%), Positives = 162/286 (56%)
Query: 474 ISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKP-YVRPCMKPMGTGSLVLNQCRHPIV 532
I+ Y Q L LA D LVS + T A +P YV+P + + + Q RHP+V
Sbjct: 797 IATNY-QALRDCVQSLATLDCLVSLA---TLASQPGYVKP--EYTEETCIHVEQGRHPMV 850
Query: 533 ELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATI 592
E SY+PND+ S + LVTGPNMGGKS+Y+R + + + QIG +VP +A +
Sbjct: 851 EQLLLDSYVPNDINLDSSKTRALLVTGPNMGGKSSYVRQVALIAIMGQIGSYVPAQAAKL 910
Query: 593 SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGM 652
++D +FTR+GA D+ G STFM+E+ ETA ++K+ T SLVI+DELGRGTST DG +
Sbjct: 911 GMLDAVFTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAI 970
Query: 653 ACSIARELASHRQPFTLFATHFHEIALLSRVIPT--FRNVQVSALEQ----EDNLVLLYQ 706
A ++ + + TLF TH+ ++ + P RNV + E ++++ LY+
Sbjct: 971 AQAVLDYMVRSIRSLTLFITHYQHLSAMVHSFPDGELRNVHMRFSESGTGADEDITFLYE 1030
Query: 707 VKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSG 752
+ G +SYG++ A++A P +LE A+ E E + + +G
Sbjct: 1031 IGEGVAHRSYGLNVARLANLPAPLLEMAKQKSAELEEKIRRRRLAG 1076
Score = 138 (53.6 bits), Expect = 5.4e-50, Sum P(2) = 5.4e-50
Identities = 81/342 (23%), Positives = 148/342 (43%)
Query: 31 DAELIQRKSNVVYLVKTMGQKDKTLETVLVNKSNLSCFSHILCVISED-KTLETVLTNTV 89
+A +++ +NV Y T ++LE S S +ILC+ + + V
Sbjct: 302 NAPFVRKLTNV-YTKSTYIDDIESLEGSTAGASGASATGYILCITETNARGWGNDEKVHV 360
Query: 90 GVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNK 149
G+ V T E D S +E ++ +P E L+ E L+ K+V L +K
Sbjct: 361 GIVAVQPTTGDIVYDEFDDGFMRSEIETRLLHIAPCEMLIVGE-LSKATEKLVQHLSGSK 419
Query: 150 VCMTGRK-------KNEFSEEDLMQDVN-----RLVRFD--DSELKNARLLPEMCLTT-A 194
+ + G K K + + + V+ ++ D D E+ + L + L
Sbjct: 420 MNVFGDKVRVERAPKAKTAAAESHSHVSSFYAEKMKSADAADDEVASNLLQKVLGLPDQV 479
Query: 195 THCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHM--SSAVMSSLHVLPQQGSTSAQTY 252
T CL ++I ++ E ++ Q + + +S HM + ++SL + Q T +
Sbjct: 480 TICLSAMIKHMTEYGLE-HVLQLTKYFQHFSSRSHMLLNGNTLTSLEIY--QNQTDYSSK 536
Query: 253 DSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRG 312
SL LDR +T G R+L +W+ +PL D + +R VN E L ++ R
Sbjct: 537 GSLFWTLDRTQTRFGQRMLRKWVGRPLLDRRQLEDR-------VNAVE---ELKDF--RN 584
Query: 313 LPDMQSLAMRIGRKKAGL-KDCYRVYEGVSQLPKLISILESL 353
+ ++ + +G+ K L K R+Y G P+L++IL+++
Sbjct: 585 VVMVERIKGLLGKIKHDLEKGLIRIYYGKCSRPELLTILQTM 626
Score = 39 (18.8 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 569 IRSIGVSVFLAQIGCFVPCDSATISVVDQI 598
IR ++ F+A +G V + A SV++++
Sbjct: 1069 IRRRRLAGFVAAVGAVVQSNQADESVIERL 1098
>UNIPROTKB|Q5B6T1 [details] [associations]
symbol:msh3 "DNA mismatch repair protein msh3"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
EMBL:BN001302 EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 464 (168.4 bits), Expect = 5.4e-50, Sum P(2) = 5.4e-50
Identities = 106/286 (37%), Positives = 162/286 (56%)
Query: 474 ISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKP-YVRPCMKPMGTGSLVLNQCRHPIV 532
I+ Y Q L LA D LVS + T A +P YV+P + + + Q RHP+V
Sbjct: 797 IATNY-QALRDCVQSLATLDCLVSLA---TLASQPGYVKP--EYTEETCIHVEQGRHPMV 850
Query: 533 ELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATI 592
E SY+PND+ S + LVTGPNMGGKS+Y+R + + + QIG +VP +A +
Sbjct: 851 EQLLLDSYVPNDINLDSSKTRALLVTGPNMGGKSSYVRQVALIAIMGQIGSYVPAQAAKL 910
Query: 593 SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGM 652
++D +FTR+GA D+ G STFM+E+ ETA ++K+ T SLVI+DELGRGTST DG +
Sbjct: 911 GMLDAVFTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAI 970
Query: 653 ACSIARELASHRQPFTLFATHFHEIALLSRVIPT--FRNVQVSALEQ----EDNLVLLYQ 706
A ++ + + TLF TH+ ++ + P RNV + E ++++ LY+
Sbjct: 971 AQAVLDYMVRSIRSLTLFITHYQHLSAMVHSFPDGELRNVHMRFSESGTGADEDITFLYE 1030
Query: 707 VKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSG 752
+ G +SYG++ A++A P +LE A+ E E + + +G
Sbjct: 1031 IGEGVAHRSYGLNVARLANLPAPLLEMAKQKSAELEEKIRRRRLAG 1076
Score = 138 (53.6 bits), Expect = 5.4e-50, Sum P(2) = 5.4e-50
Identities = 81/342 (23%), Positives = 148/342 (43%)
Query: 31 DAELIQRKSNVVYLVKTMGQKDKTLETVLVNKSNLSCFSHILCVISED-KTLETVLTNTV 89
+A +++ +NV Y T ++LE S S +ILC+ + + V
Sbjct: 302 NAPFVRKLTNV-YTKSTYIDDIESLEGSTAGASGASATGYILCITETNARGWGNDEKVHV 360
Query: 90 GVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNK 149
G+ V T E D S +E ++ +P E L+ E L+ K+V L +K
Sbjct: 361 GIVAVQPTTGDIVYDEFDDGFMRSEIETRLLHIAPCEMLIVGE-LSKATEKLVQHLSGSK 419
Query: 150 VCMTGRK-------KNEFSEEDLMQDVN-----RLVRFD--DSELKNARLLPEMCLTT-A 194
+ + G K K + + + V+ ++ D D E+ + L + L
Sbjct: 420 MNVFGDKVRVERAPKAKTAAAESHSHVSSFYAEKMKSADAADDEVASNLLQKVLGLPDQV 479
Query: 195 THCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHM--SSAVMSSLHVLPQQGSTSAQTY 252
T CL ++I ++ E ++ Q + + +S HM + ++SL + Q T +
Sbjct: 480 TICLSAMIKHMTEYGLE-HVLQLTKYFQHFSSRSHMLLNGNTLTSLEIY--QNQTDYSSK 536
Query: 253 DSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRG 312
SL LDR +T G R+L +W+ +PL D + +R VN E L ++ R
Sbjct: 537 GSLFWTLDRTQTRFGQRMLRKWVGRPLLDRRQLEDR-------VNAVE---ELKDF--RN 584
Query: 313 LPDMQSLAMRIGRKKAGL-KDCYRVYEGVSQLPKLISILESL 353
+ ++ + +G+ K L K R+Y G P+L++IL+++
Sbjct: 585 VVMVERIKGLLGKIKHDLEKGLIRIYYGKCSRPELLTILQTM 626
Score = 39 (18.8 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 569 IRSIGVSVFLAQIGCFVPCDSATISVVDQI 598
IR ++ F+A +G V + A SV++++
Sbjct: 1069 IRRRRLAGFVAAVGAVVQSNQADESVIERL 1098
>MGI|MGI:109519 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IGI] [GO:0003684
"damaged DNA binding" evidence=IGI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0019237 "centromeric DNA binding" evidence=IDA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=ISO;IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=ISO;IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:109519 GO:GO:0005524 GO:GO:0003684
GO:GO:0019237 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 KO:K08736
CTD:4437 HOVERGEN:HBG006400 OrthoDB:EOG434W57 GO:GO:0016447
EMBL:M80360 EMBL:L10319 EMBL:L10295 EMBL:L10296 EMBL:L10297
EMBL:L10298 EMBL:L10299 EMBL:L10300 EMBL:L10301 EMBL:L10304
EMBL:L10305 EMBL:L10306 EMBL:L10307 EMBL:L10308 EMBL:L10309
EMBL:L10310 EMBL:L10311 EMBL:L10312 EMBL:L10313 EMBL:L10314
EMBL:L10315 EMBL:L10316 EMBL:L10317 EMBL:L10318 EMBL:M24919
IPI:IPI00896729 PIR:A32495 RefSeq:NP_034959.2 UniGene:Mm.343101
ProteinModelPortal:P13705 SMR:P13705 STRING:P13705
PhosphoSite:P13705 PaxDb:P13705 PRIDE:P13705 GeneID:17686
KEGG:mmu:17686 InParanoid:P13705 ChiTaRS:MSH3 NextBio:292256
CleanEx:MM_MSH3 Genevestigator:P13705 GermOnline:ENSMUSG00000014850
Uniprot:P13705
Length = 1091
Score = 435 (158.2 bits), Expect = 6.1e-50, Sum P(3) = 6.1e-50
Identities = 101/279 (36%), Positives = 154/279 (55%)
Query: 481 TLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVS- 539
TL + D LA D + FS+A Y RP ++ +++ RHP++++ G
Sbjct: 775 TLCKAVDHLATVDCI--FSLAKVAKQGNYCRPTLQE--EKKIIIKNGRHPMIDVLLGEQD 830
Query: 540 -YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQI 598
++PN E ++TGPNMGGKS+YI+ + + +AQIG +VP + ATI +VD I
Sbjct: 831 QFVPNSTSLSDSE-RVMIITGPNMGGKSSYIKQVTLVTIMAQIGSYVPAEEATIGIVDGI 889
Query: 599 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAR 658
FTR+GAAD+ Y+G STFM ++ +TA +I++ + SLVI+DELGRGTST DG +A +
Sbjct: 890 FTRMGAADNIYKGRSTFMEQLTDTAEIIRRASPQSLVILDELGRGTSTHDGIAIAYATLE 949
Query: 659 ELASHRQPFTLFATHFHEIALLSRVIPT-FRNVQVSALEQED--------------NLVL 703
+ TLF TH+ + L + P N + L ED ++
Sbjct: 950 YFIRDVKSLTLFVTHYPPVCELEKCYPEQVGNYHMGFLVNEDESKQDSGDMEQMPDSVTF 1009
Query: 704 LYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
LYQ+ G +SYG++ AK+A P ++L++A KE E
Sbjct: 1010 LYQITRGIAARSYGLNVAKLADVPREVLQKAAHKSKELE 1048
Score = 172 (65.6 bits), Expect = 6.1e-50, Sum P(3) = 6.1e-50
Identities = 69/314 (21%), Positives = 138/314 (43%)
Query: 69 SHILCVISEDKTLETVLTNTVGVAIVDLD--TKKFYMGEIPDDDYYSNLEAIIVQKSPKE 126
+++LC+ E + ++ + V +V + T + D LE I P E
Sbjct: 324 NYLLCIYEEKENIKDKKKGNLSVGVVGVQPATGEVVFDCFQDSASRLELETRISSLQPVE 383
Query: 127 CLLPAEYLNDNK---NKIVTILDRNKVCMTGRKKNEFSE-EDLMQDVNRLVRFDDSELKN 182
LLP++ + + + R+ R N + E Q V + + +
Sbjct: 384 LLLPSDLSEPTEMLIQRATNVSVRDDRIRVERMNNTYFEYSHAFQTVTEFYAREIVDSQG 443
Query: 183 ARLLPEMC-LTTATHC-LRSLINYLELMNNEDNMNQ-FSIHSIDYS-KYVHMSSAVMSSL 238
++ L + L C L ++I YL+ N E +++ S + +++ ++ + +L
Sbjct: 444 SQSLSGVINLEKPVICALAAVIRYLKEFNLEKMLSKPESFKQLSSGMEFMRINGTTLRNL 503
Query: 239 HVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNN 298
++ Q T +T SLL +LD +T G R L W+ QPL L I R AV+ ++++
Sbjct: 504 EMV--QNQTDMKTKGSLLWVLDHTKTSFGRRKLKNWVTQPLLKLREINARLDAVSDVLHS 561
Query: 299 TEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLP-KLISILESLVQNV 357
+ E LR LPD++ I KK ++ + + + + QL +L +++ ++ +V
Sbjct: 562 ESSVFEQIENLLRKLPDVERGLCSIYHKKCSTQEFFLIVKSLCQLKSELQALMPAVNSHV 621
Query: 358 EASNLNTILSSLQS 371
++ L ++ L S
Sbjct: 622 QSDLLRALIVELLS 635
Score = 51 (23.0 bits), Expect = 2.5e-37, Sum P(3) = 2.5e-37
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 148 NKVCMTGRKKNE-FSEEDLM-QDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYL 205
NK + RK +++ L+ +DVN L+R DDS N + E+ T+T+ L L Y
Sbjct: 279 NKSSVFSRKLTALYTKSTLIGEDVNPLIRLDDSV--N---IDEVMTDTSTNYL--LCIYE 331
Query: 206 ELMNNED 212
E N +D
Sbjct: 332 EKENIKD 338
Score = 42 (19.8 bits), Expect = 2.1e-36, Sum P(3) = 2.1e-36
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 105 EIPDDDYY--SNLEAII-VQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFS 161
++P Y S E +I ++ S C+ PA+++ K V+ + + R+ N+
Sbjct: 693 KLPSLQYVTVSGQEFMIEIKNSAVSCI-PADWVKVGSTKAVSRFHPPFIVESYRRLNQLR 751
Query: 162 EEDLMQDVN 170
E+ L+ D N
Sbjct: 752 EQ-LVLDCN 759
Score = 41 (19.5 bits), Expect = 6.1e-50, Sum P(3) = 6.1e-50
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 25 YCVHGEDAELIQRKSNV 41
Y GEDAE+ R+ N+
Sbjct: 214 YRFFGEDAEIAARELNI 230
>DICTYBASE|DDB_G0281683 [details] [associations]
symbol:msh3 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032302 "MutSbeta
complex" evidence=ISS;IBA] [GO:0032135 "DNA insertion or deletion
binding" evidence=ISS] [GO:0006312 "mitotic recombination"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0000735 "removal of nonhomologous ends" evidence=ISS]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0281683 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0003684 EMBL:AAFI02000042
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 RefSeq:XP_001134558.1
STRING:Q1ZXH0 EnsemblProtists:DDB0232960 GeneID:8623184
KEGG:ddi:DDB_G0281683 OMA:ATRISHI Uniprot:Q1ZXH0
Length = 1428
Score = 457 (165.9 bits), Expect = 1.0e-49, Sum P(4) = 1.0e-49
Identities = 131/471 (27%), Positives = 234/471 (49%)
Query: 327 KAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSL--------KMMDRK 378
K G D + G +L K I S + A T+ +L K+ + K
Sbjct: 935 KDGDSDSFDYIGGEDKLSKRIKYFLSNINKETAKEYGTVGCDKSNLWVDLEKYEKIRETK 994
Query: 379 DAVMDKMKEYLESTARRLNLVADK-TIKLENSPQ-GFAYRITMKLN-NSIDDRYTILDTV 435
+ + KE+ ++ + + K +++ + P G Y + + + ++ + +++
Sbjct: 995 EKIEQVEKEF-KNVLKNIRKELSKPSLEYHHMPGLGLEYLLELPPSFKAVPKSWIKVNST 1053
Query: 436 RGGVRFQDDRLATANTQYQAIQREYET----HQQSIVEEVIGISAGYTQTLNQLSDVLAQ 491
+ R+ + Q + + + ET Q+S + + S Y+ N ++ + +
Sbjct: 1054 QKMARYHAPEVLE---QLKILSQSRETLKIQSQESWISFLGEFSVDYSLFSNFVNKI-SN 1109
Query: 492 FDVLVSFSIASTCAPKPYVRP-CMKPMGTGSLVLNQCRHPIVE--LQGGV-SYIPNDVYF 547
D L FS+A + + Y+RP +K G + + RHP+VE L G SY+PN +
Sbjct: 1110 LDCL--FSLAKVSSLEGYIRPQFVKEKKDGGIQIENGRHPVVEAILSGSDGSYVPNTIEL 1167
Query: 548 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADS 607
+ ++TGPNMGGKS+ +R + V +AQ+GCFVP S ++SV D I+TR+GA DS
Sbjct: 1168 RESACKSMIITGPNMGGKSSLLRQTALIVIMAQVGCFVPATSCSLSVFDAIYTRMGARDS 1227
Query: 608 QYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPF 667
G STF +E++ET+ ++K T+N+LVI+DELGRGTST DG +A S + + + +
Sbjct: 1228 IGTGKSTFFIELEETSDILKNSTQNTLVILDELGRGTSTNDGVAIAYSTLKYIVEVMKCY 1287
Query: 668 TLFATHFHEIALLSRVIPT-FRNVQVSALEQEDN----------LVLLYQVKPGSCVKSY 716
LF TH+ +A L PT N + LE++ + ++ LY++ G+ SY
Sbjct: 1288 CLFVTHYPLLAQLELQYPTQVGNFHMGYLEEKQDQQLQKSVIPKVIFLYKLVKGAAQNSY 1347
Query: 717 GVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETNNRE-EEYFKTV 766
G++ A++AG P +++ A E + S+ + D + ++ E K++
Sbjct: 1348 GLNIARLAGLPMEVIADALKKSNEMKESITRRANLSDGKDQQQIENEIKSI 1398
Score = 130 (50.8 bits), Expect = 1.0e-49, Sum P(4) = 1.0e-49
Identities = 51/224 (22%), Positives = 102/224 (45%)
Query: 172 LVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMS 231
+++F S L +++ CL L I++ ++ E N F + S ++ +
Sbjct: 737 VLKFVKSTLNKEQII---CLGILLSYLNEFIHFGSILKVESNFKAFRV-----SNHLVLP 788
Query: 232 SAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAA 291
+ + +L +L + + SL+ +++R T G R+ W+ +PL L+ I ER A
Sbjct: 789 HSTIVNLELLVNESDNKEK--GSLIWLMNRTSTFSGSRMFINWICKPLNQLELIKERQDA 846
Query: 292 VNILVN----NTEARMNLHEYALRGLPDMQSLAMRIGRK-KAGLKDCYRVYEGVSQLPKL 346
V LVN N+ +++ +PD+Q RI K + K+ ++ L ++
Sbjct: 847 VEELVNGIKTNSPPIVSIISLFKSHIPDLQRNLSRIYYKVQCTPKEFLNT---MTSLQRI 903
Query: 347 ISILESLVQNVEASNLN-TILSSLQSLKMMDRKDAVMDKMKEYL 389
+ + + + N + N T+L+S+ L+ D KD D +Y+
Sbjct: 904 VELFKEINNNNSSYKFNSTLLNSIFKLQN-DNKDGDSDSF-DYI 945
Score = 67 (28.6 bits), Expect = 1.0e-49, Sum P(4) = 1.0e-49
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 86 TNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKI 141
T+T+ V + T + D+ S LE I+ P E L+P NK K+
Sbjct: 615 TSTISFVAVSVKTGEIIYDTFKDNVMRSQLETILTHIKPSEILIPPTTTTVNKQKV 670
Score = 38 (18.4 bits), Expect = 1.0e-49, Sum P(4) = 1.0e-49
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 25 YCVHGEDAELIQRKSNVV-YLVK 46
Y GEDAE+ + N+ Y+ K
Sbjct: 480 YKFFGEDAEVANKVLNIYSYVAK 502
>TIGR_CMR|APH_0857 [details] [associations]
symbol:APH_0857 "DNA mismatch repair protein MutS"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
RefSeq:YP_505434.1 STRING:Q2GJL7 GeneID:3930413 KEGG:aph:APH_0857
PATRIC:20950410 HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
BioCyc:APHA212042:GHPM-871-MONOMER PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 Uniprot:Q2GJL7
Length = 820
Score = 475 (172.3 bits), Expect = 1.2e-49, Sum P(3) = 1.2e-49
Identities = 115/354 (32%), Positives = 184/354 (51%)
Query: 389 LESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLAT 448
L R L ++ I L N+ G+ ++ S D+ + ++ R+ L
Sbjct: 454 LRDKYRALTGISSLKI-LSNNLLGYYIEVSSSYKVS-DESFVRRQSLANSTRYTTAELKE 511
Query: 449 ANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKP 508
+ + Q E + I + + A Q + ++ +A+ DVL + +A
Sbjct: 512 LEERIVSAQSESADLEAQIFKGLCSRIADECQDIGLAAEAVAELDVLTT--LAEVAVENN 569
Query: 509 YVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTY 568
YVRP + +V RHP+VE+ G +I ND G S +L+TGPNM GKST+
Sbjct: 570 YVRPIVDDSKQFKIVRG--RHPVVEV--GTDFIANDCDLSEGN-SMSLITGPNMAGKSTF 624
Query: 569 IRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK 628
+R + LA IG FVP + A I V+D+IF+RVGA+D+ G STFM+EM ETA ++ +
Sbjct: 625 LRQNALIAVLAHIGSFVPAEHAHIGVIDKIFSRVGASDNIALGHSTFMVEMVETAAILNQ 684
Query: 629 CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFR 688
T SLVI+DE+GRGT+ DG +A + + + + ATH+HE+ LS R
Sbjct: 685 ATSKSLVILDEIGRGTAINDGLSIALAAIEHIHDVTKSRAICATHYHELPKLSSHFENIR 744
Query: 689 NVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
+ E + +V L+++ PG +SYG+H A +AG+P+ LE+A+ M +++
Sbjct: 745 FFCLRIEEWKGEVVFLHELIPGISSRSYGIHVAGLAGFPKGALERAKFFMSKFD 798
Score = 114 (45.2 bits), Expect = 1.2e-49, Sum P(3) = 1.2e-49
Identities = 52/262 (19%), Positives = 120/262 (45%)
Query: 90 GVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNK 149
GVA ++L T F++ +D S ++ + P E L+ ++ L + ++ + +L R++
Sbjct: 142 GVAWMELSTGLFHVRASKLEDLDSEIQRL----GPSELLI-SDKLKEQQS-MELVLKRHR 195
Query: 150 VCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELMN 209
+T ++ F + + + + + + ++ E+ ++ C SL+ Y+ M
Sbjct: 196 CAITSHNESFFDSKRAEKVLCGV--YGVTTVQGLGDFEEVEVSA---C-GSLLEYVR-MT 248
Query: 210 NEDNMNQFSIHSI-DYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGH 268
++ + S + D + +V + + +L + Q S + SL+ +D T G
Sbjct: 249 QRGSLPKLSYPKVRDSNSFVLIDGPALRNLELFSTQ---SGEKKGSLISTIDHTVTAMGS 305
Query: 269 RLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKA 328
R+L +++ P+ + I R AV V+N + + + G PD++ + R+ K
Sbjct: 306 RMLKRYLAFPVACHNVINGRQDAVEFFVSN-RSLCEVIRGVINGFPDIERILTRVKFSKC 364
Query: 329 GLKDCYRVYEGVSQLPKLISIL 350
KD + + +S++ +L I+
Sbjct: 365 SPKDIHLLGRALSKIFELSRII 386
Score = 40 (19.1 bits), Expect = 1.2e-49, Sum P(3) = 1.2e-49
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 330 LKDCYRVYEGVSQLPKLIS 348
L+D YR G+S L K++S
Sbjct: 454 LRDKYRALTGISSL-KILS 471
>UNIPROTKB|F1P6X2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:AAEX03004895 EMBL:AAEX03004896
Ensembl:ENSCAFT00000032471 Uniprot:F1P6X2
Length = 798
Score = 442 (160.7 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 127/427 (29%), Positives = 203/427 (47%)
Query: 381 VMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKL----NNSIDDRYTILDTVR 436
++D + + A + NL + +S +GF ++T+ NN + + + V+
Sbjct: 370 IVDDIAGMISQLAEKYNLPLRTSF---SSARGFFIQMTIDCTALPNNQLPSEFIKISKVK 426
Query: 437 GGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLV 496
F L N + Q RE IV +++ + L +LSD ++ D+L+
Sbjct: 427 SSYTFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLL 486
Query: 497 SFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNL 556
SF A C YVRP T +L + Q HPI+E I N+ Y G +F +
Sbjct: 487 SF--AHACTLSDYVRPEF----TDTLAIKQGWHPILEKISVEKPIANNTYITEGS-NFLI 539
Query: 557 VTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFM 616
+TGPNM GKSTY++ I + +AQIG +VP + ++ + +QIFTR+ D STFM
Sbjct: 540 ITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFM 599
Query: 617 MEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHE 676
EMKE A ++ SL++IDELGRGTST +G G+ ++ L S + FTLFATHF E
Sbjct: 600 KEMKEIAYILHNANNKSLILIDELGRGTSTEEGIGICYAVCEYLLSLKA-FTLFATHFLE 658
Query: 677 IALLSRVIPTFRNVQVSALEQEDNL----VLLYQVK--PGSCV-KSYGVHCAKMAGYPED 729
+ + + P N+ +D +LY K G K+YG+ A+++ P
Sbjct: 659 LCHIEALYPNVENMHFEVQHVKDTSRNKEAILYTYKLCKGLTEEKNYGLKAAEVSSLPPS 718
Query: 730 MLEQARDLMKEYEYSLDTKTPSGDETNNREEEYF---KTVQEGEYQMFD--FLQQCLS-L 783
++ A+++ + + S E + Y + VQ D L+ LS L
Sbjct: 719 IVLDAKEITAQITRQILQNQRSTPEMERQRAVYHLATRLVQTARNSQLDPDSLRMYLSNL 778
Query: 784 SKQKDTN 790
K+ +T+
Sbjct: 779 KKKYETD 785
Score = 129 (50.5 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 68/316 (21%), Positives = 131/316 (41%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLP-AEYLNDNKNKIVTILDR 147
+G+A +DL + + + + D+ Y+ + + SP E ++ + N K+ T++
Sbjct: 33 IGMASIDLRSPQIILSQFADNTTYAKVITKLKILSPLEIIMSNTACVVGNSTKLFTLITE 92
Query: 148 N--KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYL 205
N V T ++ F+E ++ + +L + S + CL +L+ Y+
Sbjct: 93 NFKNVNFTTIQRKYFNETKGLEYIEQLCITEFSTVLMEVQSKYYCLAAVA----ALLKYV 148
Query: 206 ELMNNE---DNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRC 262
E + N + + + + SSA +L +L + + +L G+L+
Sbjct: 149 EFIQNSVYAPKSLKICFQGSEQTAMIDSSSA--QNLELLIN--NQDCRNNHTLFGVLNYT 204
Query: 263 RTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMR 322
+TP G R L + +PL D++ I R V L+ + E L R L Q L++
Sbjct: 205 KTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVISRFLDTEQLLSVL 264
Query: 323 IGRKKAGLKDCYRVYEG-VSQLPKLISILESLVQ--NVEASNLNTILSSLQSLKMMDRK- 378
+ K +D E ++ L L LE LV + N NT L + D++
Sbjct: 265 VQIPK---QDTVNAAESKITNLIYLKHTLE-LVDPLKIALKNYNTPLLRAYCGSLEDKRF 320
Query: 379 DAVMDKMKEYLESTAR 394
+++K+K + R
Sbjct: 321 GIILEKIKTVINDDTR 336
>RGD|2322311 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0008340 "determination of adult lifespan"
evidence=ISO] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISO] [GO:0030983 "mismatched
DNA binding" evidence=IEA;ISO] [GO:0032137 "guanine/thymine mispair
binding" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=ISO] [GO:0045190 "isotype switching" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] [GO:0097193 "intrinsic apoptotic signaling
pathway" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043570 "maintenance of DNA repeat
elements" evidence=ISO] [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0032142 "single guanine insertion binding" evidence=ISO]
[GO:0032143 "single thymine insertion binding" evidence=ISO]
[GO:0032357 "oxidized purine DNA binding" evidence=ISO] [GO:0032405
"MutLalpha complex binding" evidence=ISO] [GO:0043531 "ADP binding"
evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 RGD:2322311 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0000287 GO:GO:0043531
GO:GO:0003682 GO:GO:0016887 GO:GO:0006298 GO:GO:0000790
GO:GO:0045190 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 EMBL:CH473947 GO:GO:0016446 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 OrthoDB:EOG4CG07F IPI:IPI00369351
RefSeq:XP_002726765.1 RefSeq:XP_002729643.2
Ensembl:ENSRNOT00000021923 GeneID:100360342 KEGG:rno:100360342
UCSC:RGD:2322311 Uniprot:D4A0U9
Length = 1361
Score = 434 (157.8 bits), Expect = 3.4e-47, Sum P(3) = 3.4e-47
Identities = 100/271 (36%), Positives = 154/271 (56%)
Query: 490 AQFDVLVSFSIASTCAPKPYVRPCMKPMGTGS---LVLNQCRHP-IVELQGGVSYIPNDV 545
A DVL+ + S P RP + G + L L RHP I + G +IPND+
Sbjct: 1055 AVLDVLLCLASYSQGGDGPMCRPVLLLPGEDTHPFLELKGSRHPCITKTFFGDDFIPNDI 1114
Query: 546 YF-------KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQI 598
G+ LVTGPNMGGKST IR G+ +AQ+GC+VP + ++ VD++
Sbjct: 1115 LIGCEEDAEADGKAYCVLVTGPNMGGKSTLIRQAGLLAVMAQMGCYVPAELCRLTPVDRV 1174
Query: 599 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAR 658
FTR+GA+D G STF +E+ ETA++++ T +SLV++DELGRGT+TFDG +A ++ +
Sbjct: 1175 FTRLGASDRIMSGESTFFVELSETASILRHATAHSLVLVDELGRGTATFDGTAIASAVVK 1234
Query: 659 ELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQE------DNLVLLYQVKPGS 711
ELA + TLF+TH+H + S+ + +E E + + LY+ G+
Sbjct: 1235 ELAETIKCRTLFSTHYHSLVEDYSKNVCVRLGHMACMVENECEDPSQETITFLYKFIKGA 1294
Query: 712 CVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
C KSYG + A++A PE+++++ +E+E
Sbjct: 1295 CPKSYGFNAARLANLPEEVIQKGHRKAREFE 1325
Score = 122 (48.0 bits), Expect = 3.4e-47, Sum P(3) = 3.4e-47
Identities = 65/249 (26%), Positives = 110/249 (44%)
Query: 225 SKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDA 284
S+ + + + +S+L + T+ T +LL LD C TP G RLL QW+ PL A
Sbjct: 730 SQRMVLDAVTLSNLEIF--LNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCSPSA 787
Query: 285 IVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLP 344
I +R A+ L+ + + + L+ LPD++ L +I + LK P
Sbjct: 788 ISDRLDAIEDLMAVPDKVAEVADL-LKKLPDLERLLSKIHNVGSPLKS--------QNHP 838
Query: 345 KLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTI 404
+I+ + LS+L+ K+M + +M+ + + +S + L V T+
Sbjct: 839 DTRAIMYEET-TYSKKKIIDFLSALEGFKVMCKITRLMEDVADGFKS--KTLKQVV--TL 893
Query: 405 KLENSPQGFAYRITMKLNN---SIDD---RYTILDTVRGGVRFQ-DDRLATANTQYQAIQ 457
+ + SP+G +T +LN + D R T L T + G D LA Q++
Sbjct: 894 QTK-SPKGRFPDLTAELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLL 952
Query: 458 REYETHQQS 466
EY Q+S
Sbjct: 953 -EYLDKQRS 960
Score = 71 (30.1 bits), Expect = 3.4e-47, Sum P(3) = 3.4e-47
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 68 FSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKEC 127
+S L + E + + GV VD KF++G+ DD + S L ++ P +
Sbjct: 537 YSRYLLSLKEKEEDSSGHMRAYGVCFVDTSLGKFFLGQFSDDRHCSRLRTLVAHYPPVQI 596
Query: 128 L 128
L
Sbjct: 597 L 597
Score = 42 (19.8 bits), Expect = 7.5e-39, Sum P(3) = 7.5e-39
Identities = 23/86 (26%), Positives = 36/86 (41%)
Query: 254 SLLGILDRCRTPQGHRLLAQW-MKQPLKDLDAIVERHAAVNILVNNT--EARMNLHEYAL 310
SLL LD+ R+ G R + W + + L+ I E A N+ + Y
Sbjct: 950 SLLEYLDKQRSRIGCRNIVYWGIGRNRYQLE-IPENFATRNLPEEYELKSTKKGCKRYWT 1008
Query: 311 RGLPD-MQSLAMRIGRKKAGLKDCYR 335
+ + + +L R+ A LKDC R
Sbjct: 1009 KVIEKKLSNLINAEERRDASLKDCMR 1034
>UNIPROTKB|F5H2F9 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0003682
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 GO:GO:0045910
GO:GO:0016446 EMBL:AC006509 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 HGNC:HGNC:7329 IPI:IPI01013073
ProteinModelPortal:F5H2F9 SMR:F5H2F9 Ensembl:ENST00000538136
ArrayExpress:F5H2F9 Bgee:F5H2F9 Uniprot:F5H2F9
Length = 1058
Score = 432 (157.1 bits), Expect = 4.5e-47, Sum P(3) = 4.5e-47
Identities = 99/273 (36%), Positives = 157/273 (57%)
Query: 487 DVLAQFDVLVSFSIASTCAPKPYVRPC-MKPMGTGS-LVLNQCRHP-IVELQGGVSYIPN 543
+ +A DVL+ + S P RP + P T L L RHP I + G +IPN
Sbjct: 750 ECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPN 809
Query: 544 DVYF-------KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVD 596
D+ ++G+ LVTGPNMGGKST +R G+ +AQ+GC+VP + ++ +D
Sbjct: 810 DILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPID 869
Query: 597 QIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSI 656
++FTR+GA+D G STF +E+ ETA+++ T +SLV++DELGRGT+TFDG +A ++
Sbjct: 870 RVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAV 929
Query: 657 ARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQE------DNLVLLYQVKP 709
+ELA + TLF+TH+H + S+ + +E E + + LY+
Sbjct: 930 VKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIK 989
Query: 710 GSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
G+C KSYG + A++A PE+++++ +E+E
Sbjct: 990 GACPKSYGFNAARLANLPEEVIQKGHRKAREFE 1022
Score = 115 (45.5 bits), Expect = 4.5e-47, Sum P(3) = 4.5e-47
Identities = 68/280 (24%), Positives = 122/280 (43%)
Query: 198 LRSLINYLELMN-NEDNMNQFSIHSIDYSKYVHM--SSAVMSSLHVLPQQGSTSAQTYDS 254
L S+ N+ E + + D ++ +I Y M + +++L + T+ T +
Sbjct: 398 LLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIF--LNGTNGSTEGT 455
Query: 255 LLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLP 314
LL +D C TP G RLL QW+ PL + AI +R A+ L+ + + E L+ LP
Sbjct: 456 LLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVEL-LKKLP 514
Query: 315 DMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLKM 374
D++ L +I + LK P +I+ + LS+L+ K+
Sbjct: 515 DLERLLSKIHNVGSPLKS--------QNHPDSRAIMYEET-TYSKKKIIDFLSALEGFKV 565
Query: 375 MDRKDAVMDKMKEYLESTARRLNLVADKTIKLEN-SPQGFAYRITMKLNN---SIDD--- 427
M + +M+++ + +S + + I L+ +P+G +T++LN + D
Sbjct: 566 MCKIIGIMEEVADGFKSK------ILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKA 619
Query: 428 RYTILDTVRGGVRFQ-DDRLATANTQYQAIQREYETHQQS 466
R T L T + G D LA Q++ EY Q++
Sbjct: 620 RKTGLITPKAGFDSDYDQALADIRENEQSLL-EYLEKQRN 658
Score = 73 (30.8 bits), Expect = 4.5e-47, Sum P(3) = 4.5e-47
Identities = 22/84 (26%), Positives = 36/84 (42%)
Query: 68 FSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKEC 127
+S L + E + + T GV VD KF++G+ DD + S ++ P +
Sbjct: 233 YSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQV 292
Query: 128 LLPAEYLNDNKNKIVTILDRNKVC 151
L L+ + K TIL + C
Sbjct: 293 LFEKGNLS-KETK--TILKSSLSC 313
>ZFIN|ZDB-GENE-020905-3 [details] [associations]
symbol:msh6 "mutS homolog 6 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0045190 "isotype switching" evidence=IBA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 ZFIN:ZDB-GENE-020905-3 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0045190
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 GO:GO:0016446
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 HSSP:P23909 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
HOVERGEN:HBG000101 EMBL:AF412834 IPI:IPI00513357 UniGene:Dr.4108
ProteinModelPortal:Q90XA6 SMR:Q90XA6 STRING:Q90XA6
InParanoid:Q90XA6 ArrayExpress:Q90XA6 Uniprot:Q90XA6
Length = 1369
Score = 410 (149.4 bits), Expect = 4.8e-47, Sum P(4) = 4.8e-47
Identities = 94/243 (38%), Positives = 143/243 (58%)
Query: 522 LVLNQCRHPIV-ELQGGVSYIPNDVYF----KSGEVSFN--------LVTGPNMGGKSTY 568
L L RHP V + G +IPND++ E + LVTGPNMGGKST
Sbjct: 1093 LDLRGSRHPCVTKTFFGDDFIPNDIFIGCPGDEEEAQDDAKALAPCVLVTGPNMGGKSTL 1152
Query: 569 IRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK 628
+R G+ V LAQ+GC+VP +S ++ VD++FTR+GA+D G STF +E+ ETA+++
Sbjct: 1153 MRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILLH 1212
Query: 629 CTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFR 688
T +SLV++DELGRGT+T+DG +A ++ +EL+ TLF+TH+H + P R
Sbjct: 1213 ATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTHYHSLVEDHVQDPAVR 1272
Query: 689 NVQVSAL---EQED----NLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEY 741
++ + E ED + LY+ G+C KSYG + A++A PED+++ +++
Sbjct: 1273 LGHMACMVENECEDPSQETITFLYKFIRGACPKSYGFNAARLANIPEDVIQSGHKKARDF 1332
Query: 742 EYS 744
E S
Sbjct: 1333 ERS 1335
Score = 115 (45.5 bits), Expect = 4.8e-47, Sum P(4) = 4.8e-47
Identities = 54/209 (25%), Positives = 95/209 (45%)
Query: 198 LRSLINYLELMNNEDNMNQFSIHSIDYSKY---VHMSSAVMSSLHVLPQQGSTSAQTYDS 254
L S+ N+ E + + M Q S ++K + + +++L +L Q S++ +
Sbjct: 701 LFSMGNFEEYVPVDVEMEQAGGASCFFAKTNQRMVLDGVTLANLEIL--QNSSTGGPEGT 758
Query: 255 LLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLP 314
LL LD C TP G RLL QW+ PL + +I +R A+ L+ + + L+ LP
Sbjct: 759 LLERLDTCCTPFGKRLLKQWICAPLCNPSSIGDRLDALEDLMGAPSQTSEVTDL-LKKLP 817
Query: 315 DMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLKM 374
D++ L +I LK G + E +V + + L++L+ K+
Sbjct: 818 DLERLLSKIHSMGTPLK-------GQDHPDSRAILYEEVVYSKR--KIADFLAALEGFKV 868
Query: 375 MDRKDAVMDKMKEYLESTARRLNLVADKT 403
M ++M+ + E L+S R +V KT
Sbjct: 869 MKEIVSIMEPVGEGLKSKLLR-QVVLLKT 896
Score = 78 (32.5 bits), Expect = 4.8e-47, Sum P(4) = 4.8e-47
Identities = 38/178 (21%), Positives = 74/178 (41%)
Query: 378 KDAVMDKMKEYLESTARRLNLVADKTIKLENSPQG-FAYRITMKLNN-SIDDRYTILDTV 435
K+ D +++YL+ +RL K + + + + + ++ S+ + Y + T
Sbjct: 946 KECERD-LQDYLDRQKKRLGC---KNLSYWGTGRNRYQLEVPESVSERSLPEEYEVRSTK 1001
Query: 436 RGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVI-GISAGYTQTLNQLSDVLAQFDV 494
+G R+ + ++ Q+ + + + + + + Y + + +A DV
Sbjct: 1002 KGWKRYSTKDIERMFSELQSWEDKRDAALKDCMRRLFYNFDKNYKDWQTAV-ECMAVLDV 1060
Query: 495 LVSFSIASTCAPKPYVRPCMKPMGTGS-----LVLNQCRHPIV-ELQGGVSYIPNDVY 546
L+S S A RP M G GS L L RHP V + G +IPND++
Sbjct: 1061 LLSMCRYSQSADGSMARPEMALPGDGSYSAPFLDLRGSRHPCVTKTFFGDDFIPNDIF 1118
Score = 68 (29.0 bits), Expect = 4.8e-47, Sum P(4) = 4.8e-47
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 90 GVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECL 128
GV +D +F++G+ DD + S L ++ SP + +
Sbjct: 557 GVCFIDTSVGRFHIGQFQDDRHCSRLRTLVAHYSPAQVI 595
Score = 44 (20.5 bits), Expect = 5.2e-36, Sum P(3) = 5.2e-36
Identities = 21/82 (25%), Positives = 36/82 (43%)
Query: 259 LDRCRTPQGHRLLAQW----MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLP 314
LDR + G + L+ W + L+ +++ ER V +T + Y+ + +
Sbjct: 956 LDRQKKRLGCKNLSYWGTGRNRYQLEVPESVSERSLPEEYEVRST--KKGWKRYSTKDIE 1013
Query: 315 DMQS-LAMRIGRKKAGLKDCYR 335
M S L ++ A LKDC R
Sbjct: 1014 RMFSELQSWEDKRDAALKDCMR 1035
>UNIPROTKB|E2RJA9 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AAEX03004895 EMBL:AAEX03004896 Ensembl:ENSCAFT00000037908
Uniprot:E2RJA9
Length = 930
Score = 442 (160.7 bits), Expect = 6.4e-47, Sum P(2) = 6.4e-47
Identities = 127/427 (29%), Positives = 203/427 (47%)
Query: 381 VMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKL----NNSIDDRYTILDTVR 436
++D + + A + NL + +S +GF ++T+ NN + + + V+
Sbjct: 502 IVDDIAGMISQLAEKYNLPLRTSF---SSARGFFIQMTIDCTALPNNQLPSEFIKISKVK 558
Query: 437 GGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLV 496
F L N + Q RE IV +++ + L +LSD ++ D+L+
Sbjct: 559 SSYTFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLL 618
Query: 497 SFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNL 556
SF A C YVRP T +L + Q HPI+E I N+ Y G +F +
Sbjct: 619 SF--AHACTLSDYVRPEF----TDTLAIKQGWHPILEKISVEKPIANNTYITEGS-NFLI 671
Query: 557 VTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFM 616
+TGPNM GKSTY++ I + +AQIG +VP + ++ + +QIFTR+ D STFM
Sbjct: 672 ITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFM 731
Query: 617 MEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHE 676
EMKE A ++ SL++IDELGRGTST +G G+ ++ L S + FTLFATHF E
Sbjct: 732 KEMKEIAYILHNANNKSLILIDELGRGTSTEEGIGICYAVCEYLLSLKA-FTLFATHFLE 790
Query: 677 IALLSRVIPTFRNVQVSALEQEDNL----VLLYQVK--PGSCV-KSYGVHCAKMAGYPED 729
+ + + P N+ +D +LY K G K+YG+ A+++ P
Sbjct: 791 LCHIEALYPNVENMHFEVQHVKDTSRNKEAILYTYKLCKGLTEEKNYGLKAAEVSSLPPS 850
Query: 730 MLEQARDLMKEYEYSLDTKTPSGDETNNREEEYF---KTVQEGEYQMFD--FLQQCLS-L 783
++ A+++ + + S E + Y + VQ D L+ LS L
Sbjct: 851 IVLDAKEITAQITRQILQNQRSTPEMERQRAVYHLATRLVQTARNSQLDPDSLRMYLSNL 910
Query: 784 SKQKDTN 790
K+ +T+
Sbjct: 911 KKKYETD 917
Score = 129 (50.5 bits), Expect = 6.4e-47, Sum P(2) = 6.4e-47
Identities = 68/316 (21%), Positives = 131/316 (41%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLP-AEYLNDNKNKIVTILDR 147
+G+A +DL + + + + D+ Y+ + + SP E ++ + N K+ T++
Sbjct: 165 IGMASIDLRSPQIILSQFADNTTYAKVITKLKILSPLEIIMSNTACVVGNSTKLFTLITE 224
Query: 148 N--KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYL 205
N V T ++ F+E ++ + +L + S + CL +L+ Y+
Sbjct: 225 NFKNVNFTTIQRKYFNETKGLEYIEQLCITEFSTVLMEVQSKYYCLAAVA----ALLKYV 280
Query: 206 ELMNNE---DNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRC 262
E + N + + + + SSA +L +L + + +L G+L+
Sbjct: 281 EFIQNSVYAPKSLKICFQGSEQTAMIDSSSA--QNLELLIN--NQDCRNNHTLFGVLNYT 336
Query: 263 RTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMR 322
+TP G R L + +PL D++ I R V L+ + E L R L Q L++
Sbjct: 337 KTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVISRFLDTEQLLSVL 396
Query: 323 IGRKKAGLKDCYRVYEG-VSQLPKLISILESLVQ--NVEASNLNTILSSLQSLKMMDRK- 378
+ K +D E ++ L L LE LV + N NT L + D++
Sbjct: 397 VQIPK---QDTVNAAESKITNLIYLKHTLE-LVDPLKIALKNYNTPLLRAYCGSLEDKRF 452
Query: 379 DAVMDKMKEYLESTAR 394
+++K+K + R
Sbjct: 453 GIILEKIKTVINDDTR 468
>UNIPROTKB|F1PM27 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 Pfam:PF00855 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812
SMART:SM00293 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000004197 Uniprot:F1PM27
Length = 1263
Score = 433 (157.5 bits), Expect = 1.0e-46, Sum P(3) = 1.0e-46
Identities = 99/274 (36%), Positives = 160/274 (58%)
Query: 487 DVLAQFDVLVSFSIASTCAPKPYVRPC-MKPM-GTGSLV-LNQCRHP-IVELQGGVSYIP 542
+ +A DVL+ + S + P RP + P GT + L RHP I + G +IP
Sbjct: 980 ECIAVLDVLLCLANYSQGSDGPMCRPVILLPEEGTPPFLDLRGSRHPCITKTFFGDDFIP 1039
Query: 543 NDVYF-------KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVV 595
ND+ ++G+ LVTGPNMGGKST +R G+ +AQ+GC+VP + ++ +
Sbjct: 1040 NDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPI 1099
Query: 596 DQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACS 655
D++FTR+GA+D G STF +E+ ETA+++ T +SLV++DELGRGT+TFDG +A +
Sbjct: 1100 DRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDELGRGTATFDGTAIANA 1159
Query: 656 IARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQE------DNLVLLYQVK 708
+ +ELA + + TLF+TH+H + S+ + +E E + + LY+
Sbjct: 1160 VVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFI 1219
Query: 709 PGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
G+C KSYG + A++A PE+++++ +E+E
Sbjct: 1220 KGACPKSYGFNAARLANLPEEVIQKGHRKAREFE 1253
Score = 116 (45.9 bits), Expect = 1.0e-46, Sum P(3) = 1.0e-46
Identities = 62/244 (25%), Positives = 110/244 (45%)
Query: 230 MSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERH 289
+ + +S+L + T+ T +LL +D C TP G RLL QW+ PL AI +R
Sbjct: 663 LDAVTLSNLEIF--MNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLCSPYAINDRL 720
Query: 290 AAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISI 349
A+ L+ + ++ + L+ LPD++ L +I + LK P +I
Sbjct: 721 DAIEDLMVVPDKISDVADL-LKKLPDLERLLSKIHNVGSPLKS--------QNHPDSRAI 771
Query: 350 LESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENS 409
+ + LS+L+ K++ + +M+++ + +S + L V T++ +N
Sbjct: 772 MYEET-TYSKKKIIDFLSALEGFKVICKIIEIMEEVVDNFKS--KILKQVI--TLQTKN- 825
Query: 410 PQGFAYRITMKLNN---SIDD---RYTILDTVRGGVRFQ-DDRLATANTQYQAIQREYET 462
P+G +T++LN + D R T L T + G D LA Q++ EY
Sbjct: 826 PEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLL-EYLE 884
Query: 463 HQQS 466
Q+S
Sbjct: 885 KQRS 888
Score = 72 (30.4 bits), Expect = 1.0e-46, Sum P(3) = 1.0e-46
Identities = 18/75 (24%), Positives = 31/75 (41%)
Query: 68 FSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKEC 127
+S L + E + + T GV VD KF++G+ DD + S ++ P +
Sbjct: 463 YSKYLLSLKEKEEDSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQV 522
Query: 128 LLPAEYLNDNKNKIV 142
L L+ I+
Sbjct: 523 LFEKGNLSTETKMIL 537
>UNIPROTKB|B4DF41 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
EMBL:AC006509 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 UniGene:Hs.445052 HGNC:HGNC:7329
HOVERGEN:HBG000101 EMBL:AK293921 IPI:IPI01014931 SMR:B4DF41
STRING:B4DF41 Ensembl:ENST00000540021 Uniprot:B4DF41
Length = 1230
Score = 432 (157.1 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
Identities = 99/273 (36%), Positives = 157/273 (57%)
Query: 487 DVLAQFDVLVSFSIASTCAPKPYVRPC-MKPMGTGS-LVLNQCRHP-IVELQGGVSYIPN 543
+ +A DVL+ + S P RP + P T L L RHP I + G +IPN
Sbjct: 922 ECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPN 981
Query: 544 DVYF-------KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVD 596
D+ ++G+ LVTGPNMGGKST +R G+ +AQ+GC+VP + ++ +D
Sbjct: 982 DILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPID 1041
Query: 597 QIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSI 656
++FTR+GA+D G STF +E+ ETA+++ T +SLV++DELGRGT+TFDG +A ++
Sbjct: 1042 RVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAV 1101
Query: 657 ARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQE------DNLVLLYQVKP 709
+ELA + TLF+TH+H + S+ + +E E + + LY+
Sbjct: 1102 VKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIK 1161
Query: 710 GSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
G+C KSYG + A++A PE+++++ +E+E
Sbjct: 1162 GACPKSYGFNAARLANLPEEVIQKGHRKAREFE 1194
Score = 115 (45.5 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
Identities = 68/280 (24%), Positives = 122/280 (43%)
Query: 198 LRSLINYLELMN-NEDNMNQFSIHSIDYSKYVHM--SSAVMSSLHVLPQQGSTSAQTYDS 254
L S+ N+ E + + D ++ +I Y M + +++L + T+ T +
Sbjct: 570 LLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIF--LNGTNGSTEGT 627
Query: 255 LLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLP 314
LL +D C TP G RLL QW+ PL + AI +R A+ L+ + + E L+ LP
Sbjct: 628 LLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVEL-LKKLP 686
Query: 315 DMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLKM 374
D++ L +I + LK P +I+ + LS+L+ K+
Sbjct: 687 DLERLLSKIHNVGSPLKS--------QNHPDSRAIMYEET-TYSKKKIIDFLSALEGFKV 737
Query: 375 MDRKDAVMDKMKEYLESTARRLNLVADKTIKLEN-SPQGFAYRITMKLNN---SIDD--- 427
M + +M+++ + +S + + I L+ +P+G +T++LN + D
Sbjct: 738 MCKIIGIMEEVADGFKSK------ILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKA 791
Query: 428 RYTILDTVRGGVRFQ-DDRLATANTQYQAIQREYETHQQS 466
R T L T + G D LA Q++ EY Q++
Sbjct: 792 RKTGLITPKAGFDSDYDQALADIRENEQSLL-EYLEKQRN 830
Score = 73 (30.8 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
Identities = 22/84 (26%), Positives = 36/84 (42%)
Query: 68 FSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKEC 127
+S L + E + + T GV VD KF++G+ DD + S ++ P +
Sbjct: 405 YSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQV 464
Query: 128 LLPAEYLNDNKNKIVTILDRNKVC 151
L L+ + K TIL + C
Sbjct: 465 LFEKGNLS-KETK--TILKSSLSC 485
>SGD|S000002504 [details] [associations]
symbol:MSH6 "Protein required for mismatch repair in mitosis
and meiosis, forms a" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000710 "meiotic
mismatch repair" evidence=IMP] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032138 "single base insertion or
deletion binding" evidence=IMP;IDA] [GO:0000400 "four-way junction
DNA binding" evidence=IDA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002504
GO:GO:0005524 KO:K06630 GO:GO:0009411 GO:GO:0003684 EMBL:BK006938
GO:GO:0030983 EMBL:Z47746 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 RefSeq:NP_010384.3 GeneID:851676 KEGG:sce:YDR099W
GO:GO:0008094 GO:GO:0036297 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0000710 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
PIR:S51246 RefSeq:NP_010382.3 ProteinModelPortal:Q03834 SMR:Q03834
DIP:DIP-2423N IntAct:Q03834 MINT:MINT-618151 STRING:Q03834
PaxDb:Q03834 PeptideAtlas:Q03834 EnsemblFungi:YDR097C GeneID:851671
KEGG:sce:YDR097C CYGD:YDR097c NextBio:969292 Genevestigator:Q03834
GermOnline:YDR097C Uniprot:Q03834
Length = 1242
Score = 418 (152.2 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
Identities = 109/386 (28%), Positives = 192/386 (49%)
Query: 373 KMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTIL 432
K MDR + D++ E L T R+ ++ K ++ + + I + ++ + +
Sbjct: 787 KSMDRIQELEDELMEIL-MTYRKQFKCSNIQYK-DSGKEIYTIEIPISATKNVPSNWVQM 844
Query: 433 DTVRGGVRFQDDRL-ATANTQYQAIQREYETHQQSIVEEVIG-ISAGYTQTLNQLSDVLA 490
+ R+ D + A A + +A + ++T ++ + + A Y ++
Sbjct: 845 AANKTYKRYYSDEVRALARSMAEA-KEIHKTLEEDLKNRLCQKFDAHYNTIWMPTIQAIS 903
Query: 491 QFDVLVSFSIASTCAPKPYVRPCM-----KPMGT---GSLVLNQCRHPIVELQGGVS--Y 540
D L++ + S P RP + T G L RHP L + +
Sbjct: 904 NIDCLLAITRTSEYLGAPSCRPTIVDEVDSKTNTQLNGFLKFKSLRHPCFNLGATTAKDF 963
Query: 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFT 600
IPND+ + L+TG N GKST +R ++V +AQ+GC+VPC+SA ++ +D+I T
Sbjct: 964 IPNDIELGKEQPRLGLLTGANAAGKSTILRMACIAVIMAQMGCYVPCESAVLTPIDRIMT 1023
Query: 601 RVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAREL 660
R+GA D+ +G STF +E+ ET ++ T SL+++DELGRG S+ DGF +A S+ +
Sbjct: 1024 RLGANDNIMQGKSTFFVELAETKKILDMATNRSLLVVDELGRGGSSSDGFAIAESVLHHV 1083
Query: 661 ASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQED--NLVLLYQVKPGSCVKSYGV 718
A+H Q FATH+ +A + P R +++S L E N+ LY++ G S+G+
Sbjct: 1084 ATHIQSLGFFATHYGTLASSFKHHPQVRPLKMSILVDEATRNVTFLYKMLEGQSEGSFGM 1143
Query: 719 HCAKMAGYPEDMLEQARDLMKEYEYS 744
H A M G +++++ A+ E++
Sbjct: 1144 HVASMCGISKEIIDNAQIAADNLEHT 1169
Score = 157 (60.3 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
Identities = 65/291 (22%), Positives = 119/291 (40%)
Query: 86 TNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTIL 145
T G A +D T + M E DD + L+ ++ Q P E ++ L+ NKIV
Sbjct: 464 TKIFGAAFIDTATGELQMLEFEDDSECTKLDTLMSQVRPMEVVMERNNLSTLANKIVKFN 523
Query: 146 DR-NKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLT---TATHCLRSL 201
N + + EF + D + +E +L T L
Sbjct: 524 SAPNAIFNEVKAGEEFYDCDKTYAEIISSEYFSTEEDWPEVLKSYYDTGKKVGFSAFGGL 583
Query: 202 INYLELMNNEDNM-NQFSIHSIDYSKYVH---MSSAVMSSLHVLPQQGSTSAQTYDSLLG 257
+ YL+ + + N+ + +I D+ K H + + +L + S +L
Sbjct: 584 LYYLKWLKLDKNLISMKNIKEYDFVKSQHSMVLDGITLQNLEIF--SNSFDGSDKGTLFK 641
Query: 258 ILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQ 317
+ +R TP G R++ +W+ PL + I R +V+ L+ + R L E LPD++
Sbjct: 642 LFNRAITPMGKRMMKKWLMHPLLRKNDIESRLDSVDSLLQDITLREQL-EITFSKLPDLE 700
Query: 318 SLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSS 368
+ RI + +KD +V ++ +I + +SL N +++ +SS
Sbjct: 701 RMLARIHSRTIKVKDFEKV---ITAFETIIELQDSLKNNDLKGDVSKYISS 748
>UNIPROTKB|F1P4E2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0001541 "ovarian follicle development" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007292 "female gamete generation" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AADN02012381 IPI:IPI00596754 Ensembl:ENSGALT00000018582
Uniprot:F1P4E2
Length = 846
Score = 434 (157.8 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 116/365 (31%), Positives = 181/365 (49%)
Query: 381 VMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKL----NNSIDDRYTILDTVR 436
++D + + A + NL + +S +GF ++ N + +T + R
Sbjct: 421 IVDDIAGMITQLAEKYNLPLKTSF---SSVRGFFIQMNADCSALPNGKLPSEFTKVTKTR 477
Query: 437 GGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLV 496
F L N + Q RE IV +++ + L +LSD+++ D+L+
Sbjct: 478 NTYSFTSADLIKMNERCQESLREIYHMTYLIVCKLLNEIYEHIHCLYKLSDIVSMLDMLL 537
Query: 497 SFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNL 556
SF A C YVRP T +L + Q HPI+E + N+ Y G +F +
Sbjct: 538 SF--AHACTISDYVRPEF----TDTLAIKQGWHPILEKIAMEKPVSNNAYLTEGS-NFLI 590
Query: 557 VTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFM 616
+TGPNM GKSTYI+ I + +AQIG +VP + + + +QIFTR+G D STFM
Sbjct: 591 ITGPNMSGKSTYIKQIALCQIMAQIGSYVPAEYCSFRIAEQIFTRIGMDDDIETNASTFM 650
Query: 617 MEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHE 676
EMKE +I+ + SL+IIDELGRGTS +G G+ C A E + + FTLFATHF E
Sbjct: 651 KEMKEITYIIQNANDKSLIIIDELGRGTSAEEGIGI-CYAACEYLLNLKAFTLFATHFLE 709
Query: 677 IALLSRVIPTFRN----VQ-VSALEQEDNLVLLYQVKPGSCV-KSYGVHCAKMAGYPEDM 730
+ + + P N VQ V + ++ + Y + G K+YG+ A+++ P +
Sbjct: 710 LCHMDALYPNVENYHFEVQHVRSSAGKEKITYTYTLSKGYTEEKNYGLKAAEVSSLPPSI 769
Query: 731 LEQAR 735
+ A+
Sbjct: 770 ILDAK 774
Score = 132 (51.5 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 66/314 (21%), Positives = 131/314 (41%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLN-DNKNKIVTILDR 147
VG+A +DL + + + D+ Y+ + + +P E ++P N K+ ++
Sbjct: 84 VGMASIDLKNPEVILSQFADNTTYAKVITKLKILTPLEIIMPNTSCEAGNTTKLFALITE 143
Query: 148 N--KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYL 205
+ V T ++ F+E ++ + +L + S + CL A +L+ Y+
Sbjct: 144 HFKNVTFTTVQRKYFNETKGLEYIEQLCASEFSTVFMEIQSKYYCLAAAA----ALLKYV 199
Query: 206 ELMNNEDNM-NQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRT 264
E + N +H K + S+ +L ++ + ++ +L G+L+ RT
Sbjct: 200 EFIQNSIYAPKSLKVHFQGSEKTAMIDSSSAQNLELVTN--NRDSRNGHTLFGVLNYTRT 257
Query: 265 PQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIG 324
P G R L + +PL D + I R V + + E L + L Q L++ +
Sbjct: 258 PGGSRRLRSNILEPLVDAETIKTRLDCVQEFLQDEELFFGLQAVISKFLDTEQLLSILVQ 317
Query: 325 RKKAGLKDCYRVYEG-VSQLPKLISILESLVQNVEAS--NLNTILSSLQSLKMMDRK-DA 380
K +D + E +S + L LE LV+ ++A+ NT L + DR+
Sbjct: 318 IPK---QDTVKTAESKISNIIYLKHTLE-LVEPLKAALRRCNTSLLRAYYNALEDRRFGI 373
Query: 381 VMDKMKEYLESTAR 394
+++K+ + R
Sbjct: 374 ILEKITAVINDDTR 387
>UNIPROTKB|P52701 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=ISS;IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISS;IBA] [GO:0009411 "response to
UV" evidence=ISS;IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=ISS;IBA] [GO:0045190 "isotype
switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0032405 "MutLalpha complex binding" evidence=IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IDA;IMP] [GO:0032301
"MutSalpha complex" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032142 "single guanine insertion
binding" evidence=IDA] [GO:0032143 "single thymine insertion
binding" evidence=IDA] [GO:0032357 "oxidized purine DNA binding"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=ISS] [GO:0008340
"determination of adult lifespan" evidence=ISS] [GO:0016447
"somatic recombination of immunoglobulin gene segments"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0045910
"negative regulation of DNA recombination" evidence=IDA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0003684 GO:GO:0003682 GO:GO:0000790 GO:GO:0045190 MIM:276300
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0045910 Orphanet:144 SMART:SM00293 MIM:608089 GO:GO:0008094
GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0051096 PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F
PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E PDBsum:2O8F
HOGENOM:HOG000243127 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
CTD:2956 EMBL:U73737 EMBL:U73732 EMBL:U73733 EMBL:U73734
EMBL:U73736 EMBL:D89645 EMBL:D89646 EMBL:AY082894 EMBL:BC004246
EMBL:U54777 EMBL:U28946 IPI:IPI00106847 IPI:IPI00384456 PIR:JC5839
RefSeq:NP_000170.1 UniGene:Hs.445052 PDB:2GFU PDBsum:2GFU
ProteinModelPortal:P52701 SMR:P52701 DIP:DIP-32972N IntAct:P52701
MINT:MINT-131993 STRING:P52701 PhosphoSite:P52701 DMDM:68067672
PaxDb:P52701 PeptideAtlas:P52701 PRIDE:P52701 DNASU:2956
Ensembl:ENST00000234420 GeneID:2956 KEGG:hsa:2956 UCSC:uc002rwc.2
UCSC:uc002rwd.4 GeneCards:GC02P048010 HGNC:HGNC:7329 HPA:CAB009091
HPA:HPA028376 HPA:HPA028446 MIM:600678 MIM:614350
neXtProt:NX_P52701 PharmGKB:PA184 HOVERGEN:HBG000101
InParanoid:P52701 OrthoDB:EOG4CG07F PhylomeDB:P52701
EvolutionaryTrace:P52701 GenomeRNAi:2956 NextBio:11716
PMAP-CutDB:P52701 ArrayExpress:P52701 Bgee:P52701 CleanEx:HS_MSH6
Genevestigator:P52701 GermOnline:ENSG00000116062 Uniprot:P52701
Length = 1360
Score = 432 (157.1 bits), Expect = 1.9e-46, Sum P(3) = 1.9e-46
Identities = 99/273 (36%), Positives = 157/273 (57%)
Query: 487 DVLAQFDVLVSFSIASTCAPKPYVRPC-MKPMGTGS-LVLNQCRHP-IVELQGGVSYIPN 543
+ +A DVL+ + S P RP + P T L L RHP I + G +IPN
Sbjct: 1052 ECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPN 1111
Query: 544 DVYF-------KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVD 596
D+ ++G+ LVTGPNMGGKST +R G+ +AQ+GC+VP + ++ +D
Sbjct: 1112 DILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPID 1171
Query: 597 QIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSI 656
++FTR+GA+D G STF +E+ ETA+++ T +SLV++DELGRGT+TFDG +A ++
Sbjct: 1172 RVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAV 1231
Query: 657 ARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQE------DNLVLLYQVKP 709
+ELA + TLF+TH+H + S+ + +E E + + LY+
Sbjct: 1232 VKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIK 1291
Query: 710 GSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
G+C KSYG + A++A PE+++++ +E+E
Sbjct: 1292 GACPKSYGFNAARLANLPEEVIQKGHRKAREFE 1324
Score = 115 (45.5 bits), Expect = 1.9e-46, Sum P(3) = 1.9e-46
Identities = 68/280 (24%), Positives = 122/280 (43%)
Query: 198 LRSLINYLELMN-NEDNMNQFSIHSIDYSKYVHM--SSAVMSSLHVLPQQGSTSAQTYDS 254
L S+ N+ E + + D ++ +I Y M + +++L + T+ T +
Sbjct: 700 LLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIF--LNGTNGSTEGT 757
Query: 255 LLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLP 314
LL +D C TP G RLL QW+ PL + AI +R A+ L+ + + E L+ LP
Sbjct: 758 LLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVEL-LKKLP 816
Query: 315 DMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLKM 374
D++ L +I + LK P +I+ + LS+L+ K+
Sbjct: 817 DLERLLSKIHNVGSPLKS--------QNHPDSRAIMYEET-TYSKKKIIDFLSALEGFKV 867
Query: 375 MDRKDAVMDKMKEYLESTARRLNLVADKTIKLEN-SPQGFAYRITMKLNN---SIDD--- 427
M + +M+++ + +S + + I L+ +P+G +T++LN + D
Sbjct: 868 MCKIIGIMEEVADGFKSK------ILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKA 921
Query: 428 RYTILDTVRGGVRFQ-DDRLATANTQYQAIQREYETHQQS 466
R T L T + G D LA Q++ EY Q++
Sbjct: 922 RKTGLITPKAGFDSDYDQALADIRENEQSLL-EYLEKQRN 960
Score = 73 (30.8 bits), Expect = 1.9e-46, Sum P(3) = 1.9e-46
Identities = 22/84 (26%), Positives = 36/84 (42%)
Query: 68 FSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKEC 127
+S L + E + + T GV VD KF++G+ DD + S ++ P +
Sbjct: 535 YSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQV 594
Query: 128 LLPAEYLNDNKNKIVTILDRNKVC 151
L L+ + K TIL + C
Sbjct: 595 LFEKGNLS-KETK--TILKSSLSC 615
>WB|WBGene00003422 [details] [associations]
symbol:msh-6 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0032301 "MutSalpha complex" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 421 (153.3 bits), Expect = 4.5e-46, Sum P(4) = 4.5e-46
Identities = 109/376 (28%), Positives = 189/376 (50%)
Query: 375 MDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDT 434
++R ++++ +Y +S A++ + +IK +S + Y + M N + + +
Sbjct: 776 LNRVKEALNELNDYKDSVAKKYSC----SIKFVDSGK-VKYLLEMPENTKVSSSFELKSR 830
Query: 435 VRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTL-NQLSDVLAQFD 493
+G +R+ A+++E V G+ + + +++ FD
Sbjct: 831 RKGFIRYSTPDSEQLVAALDAVEKEKSKLGDDATRRVFE-QFGHKNPIWLETVKLVSSFD 889
Query: 494 VLVSFSIASTCAPKPYVRPCMKPMGTGS-LVLNQCRHPIVELQGG------VSYIPNDVY 546
VL S ++ + +P P T L++++ HP + LQ S+I N
Sbjct: 890 VLTSLALFAKSSPFEMCMPEFDFNATDPYLIVDKGVHPCLALQSRNEVTQTTSFIANSTT 949
Query: 547 FKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAAD 606
+ E + L+TGPNMGGKST +R V LA IG VP S ++ +D+IFTR+GA D
Sbjct: 950 MGASEAAVMLLTGPNMGGKSTLMRQTAVLAILAHIGSMVPAFSMRLTPIDRIFTRIGAND 1009
Query: 607 SQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQP 666
G STF +E+KET ++K T++SL+++DELGRGTSTFDG +A ++ ++++
Sbjct: 1010 RIMCGESTFFIELKETDIMLKNATKHSLLLVDELGRGTSTFDGTAIASAVLQKISDDLAC 1069
Query: 667 FTLFATHFHEIALLSRVIPTFRNVQVSAL-EQEDN-------LVLLYQVKPGSCVKSYGV 718
T F+TH+H I P R + + ++E+N + LY+++ G C KSYG
Sbjct: 1070 RTFFSTHYHSICDSFTNHPNVRLAHMKCVVDKENNEDPTMEDVTFLYELESGICPKSYGF 1129
Query: 719 HCAKMAGYPEDMLEQA 734
+ AK+AG ++ A
Sbjct: 1130 YAAKLAGIDHQVVRNA 1145
Score = 125 (49.1 bits), Expect = 4.5e-46, Sum P(4) = 4.5e-46
Identities = 39/129 (30%), Positives = 65/129 (50%)
Query: 210 NEDNM-NQFSIHSIDYS-KYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQG 267
N ++M N ID++ K + + + +L+++P G S T SL ++++C TP G
Sbjct: 551 NSNSMENDQKKEKIDWNGKNLILDGTALENLNIVPN-GRDSHLT--SLYYVINKCSTPFG 607
Query: 268 HRLLAQWMKQPLKDLDAIVERHAAVNILVN-NTEARMNLHEYALRGLPDMQSLAMRIGRK 326
RLL W+ QP D + +R A+ LV+ + + M L+ +PD+ L +I
Sbjct: 608 RRLLRSWLLQPTCDPKKLEQRQKAIKWLVSPDASSFMTTATATLKKIPDLDRLLQKI--H 665
Query: 327 KAGLKDCYR 335
GLK YR
Sbjct: 666 TIGLK--YR 672
Score = 73 (30.8 bits), Expect = 4.5e-46, Sum P(4) = 4.5e-46
Identities = 31/121 (25%), Positives = 53/121 (43%)
Query: 70 HILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLL 129
H+L I E ET ++ GV ++D T +G+ DDDY S L ++ + ++
Sbjct: 386 HLLA-IKEFHNPETG-KSSYGVCMIDTTTAHIRIGQFEDDDYRSQLRTLLANVIVVQAIV 443
Query: 130 PAEYLNDNKNKIVT-ILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPE 188
++ I+ IL V KK + ED++ R+V +D +A PE
Sbjct: 444 ERGSISSTTKSIINGILFSVPVEHLLPKKQFMTAEDVV----RIVSNEDYYGSDASEWPE 499
Query: 189 M 189
+
Sbjct: 500 V 500
Score = 44 (20.5 bits), Expect = 1.1e-37, Sum P(4) = 1.1e-37
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 206 ELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLL 256
EL+ NE M + + + K S+A M ++P G + YD L
Sbjct: 729 ELLGNEQEMEEVDENIYFFEKMFDRSTA-MKDGKIVPNAGCD--EEYDEAL 776
Score = 39 (18.8 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 381 VMDKMKEYLESTARRLNLVADKTIKLEN 408
V+DKM + ++ R +V +KT +N
Sbjct: 172 VLDKMDKIMDGEGERKRIV-EKTTGAKN 198
Score = 37 (18.1 bits), Expect = 4.5e-46, Sum P(4) = 4.5e-46
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 15 TIRFFNRVEFYCVHGEDAELIQRKSNVVYL 44
TI F +FY + DA + R N+ ++
Sbjct: 267 TILLFKVGKFYETYHMDAVEVVRALNIAFM 296
Score = 37 (18.1 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 756 NNREEEYFKTVQEGE 770
N +EY K +EGE
Sbjct: 708 NKLRKEYIKVQKEGE 722
>UNIPROTKB|Q9N3T8 [details] [associations]
symbol:msh-6 "Protein MSH-6" species:6239 "Caenorhabditis
elegans" [GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 421 (153.3 bits), Expect = 4.5e-46, Sum P(4) = 4.5e-46
Identities = 109/376 (28%), Positives = 189/376 (50%)
Query: 375 MDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDT 434
++R ++++ +Y +S A++ + +IK +S + Y + M N + + +
Sbjct: 776 LNRVKEALNELNDYKDSVAKKYSC----SIKFVDSGK-VKYLLEMPENTKVSSSFELKSR 830
Query: 435 VRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTL-NQLSDVLAQFD 493
+G +R+ A+++E V G+ + + +++ FD
Sbjct: 831 RKGFIRYSTPDSEQLVAALDAVEKEKSKLGDDATRRVFE-QFGHKNPIWLETVKLVSSFD 889
Query: 494 VLVSFSIASTCAPKPYVRPCMKPMGTGS-LVLNQCRHPIVELQGG------VSYIPNDVY 546
VL S ++ + +P P T L++++ HP + LQ S+I N
Sbjct: 890 VLTSLALFAKSSPFEMCMPEFDFNATDPYLIVDKGVHPCLALQSRNEVTQTTSFIANSTT 949
Query: 547 FKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAAD 606
+ E + L+TGPNMGGKST +R V LA IG VP S ++ +D+IFTR+GA D
Sbjct: 950 MGASEAAVMLLTGPNMGGKSTLMRQTAVLAILAHIGSMVPAFSMRLTPIDRIFTRIGAND 1009
Query: 607 SQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQP 666
G STF +E+KET ++K T++SL+++DELGRGTSTFDG +A ++ ++++
Sbjct: 1010 RIMCGESTFFIELKETDIMLKNATKHSLLLVDELGRGTSTFDGTAIASAVLQKISDDLAC 1069
Query: 667 FTLFATHFHEIALLSRVIPTFRNVQVSAL-EQEDN-------LVLLYQVKPGSCVKSYGV 718
T F+TH+H I P R + + ++E+N + LY+++ G C KSYG
Sbjct: 1070 RTFFSTHYHSICDSFTNHPNVRLAHMKCVVDKENNEDPTMEDVTFLYELESGICPKSYGF 1129
Query: 719 HCAKMAGYPEDMLEQA 734
+ AK+AG ++ A
Sbjct: 1130 YAAKLAGIDHQVVRNA 1145
Score = 125 (49.1 bits), Expect = 4.5e-46, Sum P(4) = 4.5e-46
Identities = 39/129 (30%), Positives = 65/129 (50%)
Query: 210 NEDNM-NQFSIHSIDYS-KYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQG 267
N ++M N ID++ K + + + +L+++P G S T SL ++++C TP G
Sbjct: 551 NSNSMENDQKKEKIDWNGKNLILDGTALENLNIVPN-GRDSHLT--SLYYVINKCSTPFG 607
Query: 268 HRLLAQWMKQPLKDLDAIVERHAAVNILVN-NTEARMNLHEYALRGLPDMQSLAMRIGRK 326
RLL W+ QP D + +R A+ LV+ + + M L+ +PD+ L +I
Sbjct: 608 RRLLRSWLLQPTCDPKKLEQRQKAIKWLVSPDASSFMTTATATLKKIPDLDRLLQKI--H 665
Query: 327 KAGLKDCYR 335
GLK YR
Sbjct: 666 TIGLK--YR 672
Score = 73 (30.8 bits), Expect = 4.5e-46, Sum P(4) = 4.5e-46
Identities = 31/121 (25%), Positives = 53/121 (43%)
Query: 70 HILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLL 129
H+L I E ET ++ GV ++D T +G+ DDDY S L ++ + ++
Sbjct: 386 HLLA-IKEFHNPETG-KSSYGVCMIDTTTAHIRIGQFEDDDYRSQLRTLLANVIVVQAIV 443
Query: 130 PAEYLNDNKNKIVT-ILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPE 188
++ I+ IL V KK + ED++ R+V +D +A PE
Sbjct: 444 ERGSISSTTKSIINGILFSVPVEHLLPKKQFMTAEDVV----RIVSNEDYYGSDASEWPE 499
Query: 189 M 189
+
Sbjct: 500 V 500
Score = 44 (20.5 bits), Expect = 1.1e-37, Sum P(4) = 1.1e-37
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 206 ELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLL 256
EL+ NE M + + + K S+A M ++P G + YD L
Sbjct: 729 ELLGNEQEMEEVDENIYFFEKMFDRSTA-MKDGKIVPNAGCD--EEYDEAL 776
Score = 39 (18.8 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 381 VMDKMKEYLESTARRLNLVADKTIKLEN 408
V+DKM + ++ R +V +KT +N
Sbjct: 172 VLDKMDKIMDGEGERKRIV-EKTTGAKN 198
Score = 37 (18.1 bits), Expect = 4.5e-46, Sum P(4) = 4.5e-46
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 15 TIRFFNRVEFYCVHGEDAELIQRKSNVVYL 44
TI F +FY + DA + R N+ ++
Sbjct: 267 TILLFKVGKFYETYHMDAVEVVRALNIAFM 296
Score = 37 (18.1 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 756 NNREEEYFKTVQEGE 770
N +EY K +EGE
Sbjct: 708 NKLRKEYIKVQKEGE 722
>MGI|MGI:1343961 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IGI;IMP] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=IGI;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IMP] [GO:0009411
"response to UV" evidence=IMP] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=ISO;IDA] [GO:0043570 "maintenance of
DNA repeat elements" evidence=IBA] [GO:0045190 "isotype switching"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO;IMP] [GO:0051096 "positive regulation
of helicase activity" evidence=ISO] [GO:0097193 "intrinsic
apoptotic signaling pathway" evidence=IMP] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 MGI:MGI:1343961 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0003684 GO:GO:0043531 GO:GO:0003682
GO:GO:0000790 GO:GO:0045190 GO:GO:0007131 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0043570 GO:GO:0045910 SMART:SM00293
GO:GO:0008094 GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 HOGENOM:HOG000243127
KO:K08737 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 CTD:2956
GeneTree:ENSGT00550000075024 HOVERGEN:HBG000101 OrthoDB:EOG4CG07F
EMBL:U42190 EMBL:AF031087 EMBL:AF031085 EMBL:AF031086 EMBL:BC051160
EMBL:BC051634 EMBL:U61388 EMBL:U61389 IPI:IPI00323790
RefSeq:NP_034960.1 UniGene:Mm.18210 ProteinModelPortal:P54276
SMR:P54276 IntAct:P54276 STRING:P54276 PhosphoSite:P54276
PaxDb:P54276 PRIDE:P54276 Ensembl:ENSMUST00000005503 GeneID:17688
KEGG:mmu:17688 InParanoid:Q6GTK8 ChiTaRS:MSH6 NextBio:292264
Bgee:P54276 CleanEx:MM_MSH6 Genevestigator:P54276
GermOnline:ENSMUSG00000005370 Uniprot:P54276
Length = 1358
Score = 431 (156.8 bits), Expect = 5.1e-46, Sum P(3) = 5.1e-46
Identities = 99/274 (36%), Positives = 156/274 (56%)
Query: 487 DVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGS---LVLNQCRHP-IVELQGGVSYIP 542
+ +A DVL+ + S P RP + G + L RHP I + G +IP
Sbjct: 1049 ECIAVLDVLLCLANYSQGGDGPMCRPEIVLPGEDTHPFLEFKGSRHPCITKTFFGDDFIP 1108
Query: 543 NDVYF-------KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVV 595
ND+ + G+ LVTGPNMGGKST IR G+ +AQ+GC+VP + ++ V
Sbjct: 1109 NDILIGCEEEAEEHGKAYCVLVTGPNMGGKSTLIRQAGLLAVMAQLGCYVPAEKCRLTPV 1168
Query: 596 DQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACS 655
D++FTR+GA+D G STF +E+ ETA++++ T +SLV++DELGRGT+TFDG +A +
Sbjct: 1169 DRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVLVDELGRGTATFDGTAIANA 1228
Query: 656 IARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQE------DNLVLLYQVK 708
+ +ELA + TLF+TH+H + S+ + +E E + + LY+
Sbjct: 1229 VVKELAETIKCRTLFSTHYHSLVEDYSKSVCVRLGHMACMVENECEDPSQETITFLYKFI 1288
Query: 709 PGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
G+C KSYG + A++A PE+++++ +E+E
Sbjct: 1289 KGACPKSYGFNAARLANLPEEVIQKGHRKAREFE 1322
Score = 113 (44.8 bits), Expect = 5.1e-46, Sum P(3) = 5.1e-46
Identities = 63/249 (25%), Positives = 109/249 (43%)
Query: 225 SKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDA 284
S+ + + + +++L + T+ T +LL LD C TP G RLL QW+ PL A
Sbjct: 727 SQRMVLDAVTLNNLEIF--LNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCSPSA 784
Query: 285 IVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLP 344
I +R AV L+ + + + L+ LPD++ L +I + LK P
Sbjct: 785 ISDRLDAVEDLMAVPDKVTEVADL-LKKLPDLERLLSKIHNVGSPLKS--------QNHP 835
Query: 345 KLISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTI 404
+I+ + LS+L+ K+M + +++++ T++ L V T+
Sbjct: 836 DSRAIMYEET-TYSKKKIIDFLSALEGFKVMCKVSGLLEEVAGGF--TSKTLKQVV--TL 890
Query: 405 KLENSPQGFAYRITMKL---NNSIDD---RYTILDTVRGGVRFQ-DDRLATANTQYQAIQ 457
+ SP+G +T +L + + D R T L T + G D LA Q++
Sbjct: 891 Q-SKSPKGRFPDLTAELQRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLL 949
Query: 458 REYETHQQS 466
EY Q+S
Sbjct: 950 -EYLDKQRS 957
Score = 72 (30.4 bits), Expect = 5.1e-46, Sum P(3) = 5.1e-46
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 68 FSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKEC 127
+S L + E + + T GV VD KF++G+ DD + S ++ P +
Sbjct: 534 YSRYLLSLKEKEEETSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQI 593
Query: 128 L 128
L
Sbjct: 594 L 594
Score = 40 (19.1 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 20/85 (23%), Positives = 34/85 (40%)
Query: 457 QREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKP 516
+ E E H ++ V G + G TL + + +LA L + A C P R +
Sbjct: 1116 EEEAEEHGKAYCVLVTGPNMGGKSTLIRQAGLLAVMAQLGCYVPAEKCRLTPVDRVFTR- 1174
Query: 517 MGTGSLVLNQCRHPIVELQGGVSYI 541
+G +++ VEL S +
Sbjct: 1175 LGASDRIMSGESTFFVELSETASIL 1199
Score = 37 (18.1 bits), Expect = 4.2e-38, Sum P(3) = 4.2e-38
Identities = 21/86 (24%), Positives = 35/86 (40%)
Query: 254 SLLGILDRCRTPQGHRLLAQW-MKQPLKDLDAIVERHAAVNILVNNT--EARMNLHEYAL 310
SLL LD+ R+ G + + W + + L+ I E A N+ + Y
Sbjct: 947 SLLEYLDKQRSRLGCKSIVYWGIGRNRYQLE-IPENFATRNLPEEYELKSTKKGCKRYWT 1005
Query: 311 RGLPD-MQSLAMRIGRKKAGLKDCYR 335
+ + + +L R+ LKDC R
Sbjct: 1006 KTIEKKLANLINAEERRDTSLKDCMR 1031
>UNIPROTKB|J9P5H1 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533 SMART:SM00534
Pfam:PF00855 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000043509 Uniprot:J9P5H1
Length = 1279
Score = 424 (154.3 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
Identities = 99/275 (36%), Positives = 160/275 (58%)
Query: 487 DVLAQFDVLVSFSIASTCAPKPYVRPC-MKPM-GTGSLV-LNQCRHP-IVELQGGVSYIP 542
+ +A DVL+ + S + P RP + P GT + L RHP I + G +IP
Sbjct: 970 ECIAVLDVLLCLANYSQGSDGPMCRPVILLPEEGTPPFLDLRGSRHPCITKTFFGDDFIP 1029
Query: 543 NDVYF-------KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVV 595
ND+ ++G+ LVTGPNMGGKST +R G+ +AQ+GC+VP + ++ +
Sbjct: 1030 NDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPI 1089
Query: 596 DQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDEL-GRGTSTFDGFGMAC 654
D++FTR+GA+D G STF +E+ ETA+++ T +SLV++DEL GRGT+TFDG +A
Sbjct: 1090 DRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDELVGRGTATFDGTAIAN 1149
Query: 655 SIARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQE------DNLVLLYQV 707
++ +ELA + + TLF+TH+H + S+ + +E E + + LY+
Sbjct: 1150 AVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKF 1209
Query: 708 KPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
G+C KSYG + A++A PE+++++ +E+E
Sbjct: 1210 IKGACPKSYGFNAARLANLPEEVIQKGHRKAREFE 1244
Score = 116 (45.9 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
Identities = 62/244 (25%), Positives = 110/244 (45%)
Query: 230 MSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERH 289
+ + +S+L + T+ T +LL +D C TP G RLL QW+ PL AI +R
Sbjct: 653 LDAVTLSNLEIF--MNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLCSPYAINDRL 710
Query: 290 AAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISI 349
A+ L+ + ++ + L+ LPD++ L +I + LK P +I
Sbjct: 711 DAIEDLMVVPDKISDVADL-LKKLPDLERLLSKIHNVGSPLKS--------QNHPDSRAI 761
Query: 350 LESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENS 409
+ + LS+L+ K++ + +M+++ + +S + L V T++ +N
Sbjct: 762 MYEET-TYSKKKIIDFLSALEGFKVICKIIEIMEEVVDNFKS--KILKQVI--TLQTKN- 815
Query: 410 PQGFAYRITMKLNN---SIDD---RYTILDTVRGGVRFQ-DDRLATANTQYQAIQREYET 462
P+G +T++LN + D R T L T + G D LA Q++ EY
Sbjct: 816 PEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLL-EYLE 874
Query: 463 HQQS 466
Q+S
Sbjct: 875 KQRS 878
Score = 72 (30.4 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
Identities = 18/75 (24%), Positives = 31/75 (41%)
Query: 68 FSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKEC 127
+S L + E + + T GV VD KF++G+ DD + S ++ P +
Sbjct: 453 YSKYLLSLKEKEEDSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQV 512
Query: 128 LLPAEYLNDNKNKIV 142
L L+ I+
Sbjct: 513 LFEKGNLSTETKMIL 527
>POMBASE|SPAC13F5.01c [details] [associations]
symbol:msh1 "mitochondrial MutS protein Msh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
"ATP binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS;IDA] [GO:0006298 "mismatch repair" evidence=ISM]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0030983 "mismatched DNA binding" evidence=ISM] [GO:0043504
"mitochondrial DNA repair" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 PomBase:SPAC13F5.01c GO:GO:0005739
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 EMBL:AB027833 PIR:T38256 RefSeq:NP_593649.2
ProteinModelPortal:O13921 STRING:O13921 PRIDE:O13921
EnsemblFungi:SPAC13F5.01c.1 GeneID:2542833 KEGG:spo:SPAC13F5.01c
HOGENOM:HOG000157750 OMA:LAMQCGD OrthoDB:EOG42591V NextBio:20803875
SUPFAM:SSF53150 Uniprot:O13921
Length = 941
Score = 506 (183.2 bits), Expect = 1.7e-45, P = 1.7e-45
Identities = 170/571 (29%), Positives = 287/571 (50%)
Query: 191 LTTATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQ 250
L T C S N +E+ N D + +F + SK +++ + +L
Sbjct: 383 LLTRRLCAPST-NIVEINNRLDLVEKFKLLPELCSKVINLLKKSNDTHRILQHLLMGRGN 441
Query: 251 TYDSLLGILDRCR-TPQGHRLLAQWMKQPLKDLDAI-VERHAAVNILVNNTEARMNLHEY 308
+YD LL + D T + H LL+ L + + H + L+NN L +
Sbjct: 442 SYD-LLKMADNFSITKEIHSLLSPLESSSAFRLLLLNMHPHDELKQLINNAVDENALMKQ 500
Query: 309 ALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQ-LPKLISILESLVQN-VEASNLNTIL 366
+ + + +A + L+D E V + L I +S +N V SN N L
Sbjct: 501 KINEEEETEVIAQEA---EEILQDENAQVEIVKKSLSSEFDIRQSFKENWVVKSNFNNNL 557
Query: 367 SSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLN-NSI 425
L + + A DK++E L ++RL K L SP Y + +KL+ N
Sbjct: 558 RKLH--EKLQSLFASYDKLQEDL---SKRLG----KKATLRKSPAKLYY-VHLKLSGNET 607
Query: 426 DDRYTILDTVRGGVRFQDDRLATANTQ---YQAIQREYET-----HQ--QSIVEEVIGIS 475
+R+ + V FQ + +TA+ Q + ++ + E HQ Q +++ +
Sbjct: 608 IERF--IKKFTQAVLFQSTK-STASFQLPGWTSLGMDLENTKLHIHQEEQRVLKSITDEI 664
Query: 476 AGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVE-- 533
+ +TL L++ L + D+ S S+A+ + +VRP + +++ Q RHPIVE
Sbjct: 665 VSHHKTLRSLANALDELDI--STSLATLAQEQDFVRPVVDDSHAHTVI--QGRHPIVEKG 720
Query: 534 LQGG-VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATI 592
L + + PND + +G V+ L+TGPNM GKST++R + LAQIG FVP +A I
Sbjct: 721 LSHKLIPFTPNDCFVGNGNVNIWLITGPNMAGKSTFLRQNAIISILAQIGSFVPASNARI 780
Query: 593 SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGM 652
+VDQIF+R+G+AD+ Y+ STFM+EM ET+ ++K T S VI+DE+GRGT+ DG +
Sbjct: 781 GIVDQIFSRIGSADNLYQQKSTFMVEMMETSFILKNATRRSFVIMDEIGRGTTASDGIAI 840
Query: 653 ACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS----ALEQEDNLVLL-YQV 707
A + L++ TLFATH H++ L++ +F+NV+ +++++D+ Y++
Sbjct: 841 AYGCLKYLSTINHSRTLFATHAHQLTNLTK---SFKNVECYCTNLSIDRDDHTFSFDYKL 897
Query: 708 KPGSCVKSYGVHCAKMAGYPEDMLEQARDLM 738
K G +S+G+ A+MAG P+++L A +++
Sbjct: 898 KKGVNYQSHGLKVAEMAGIPKNVLLAAEEVL 928
>SGD|S000000688 [details] [associations]
symbol:MSH3 "Mismatch repair protein" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IEA;IDA] [GO:0000735 "removal of
nonhomologous ends" evidence=IGI;IMP;TAS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0032135 "DNA insertion or deletion
binding" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000000688 GO:GO:0005524 GO:GO:0005737
GO:GO:0003684 EMBL:X59720 EMBL:BK006937 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032135 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M EMBL:X64954 EMBL:M96250
PIR:S19508 RefSeq:NP_010016.2 ProteinModelPortal:P25336 SMR:P25336
DIP:DIP-2422N IntAct:P25336 MINT:MINT-633647 STRING:P25336
PaxDb:P25336 PeptideAtlas:P25336 PRIDE:P25336 EnsemblFungi:YCR092C
GeneID:850454 KEGG:sce:YCR092C CYGD:YCR092c
GeneTree:ENSGT00550000074949 NextBio:966078 Genevestigator:P25336
GermOnline:YCR092C Uniprot:P25336
Length = 1018
Score = 451 (163.8 bits), Expect = 2.5e-45, Sum P(2) = 2.5e-45
Identities = 123/399 (30%), Positives = 207/399 (51%)
Query: 355 QNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFA 414
Q ++ NLN S +K+ ++V ++KE L + L K L N
Sbjct: 595 QVMDFFNLNNYDCSEGIIKIQRESESVRSQLKEELAEIRKYL-----KRPYL-NFRDEVD 648
Query: 415 YRITMKLNNSID--DRYTILDTVRGGVRFQDDRLA--TANTQY--QAIQREYETHQQSIV 468
Y I +K + D D + ++ + RF R T +Y + RE E + +
Sbjct: 649 YLIEVKNSQIKDLPDDWIKVNNTKMVSRFTTPRTQKLTQKLEYYKDLLIRESELQYKEFL 708
Query: 469 EEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCR 528
+ I+A YT+ L +++ LAQ+D ++S + A++C YVRP G +++ R
Sbjct: 709 NK---ITAEYTE-LRKITLNLAQYDCILSLA-ATSCNVN-YVRPTFVN-GQQAIIAKNAR 761
Query: 529 HPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCD 588
+PI+E V Y+PND+ N++TGPNMGGKS+YIR + + +AQIG FVP +
Sbjct: 762 NPIIESLD-VHYVPNDIMMSPENGKINIITGPNMGGKSSYIRQVALLTIMAQIGSFVPAE 820
Query: 589 SATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFD 648
+S+ + + TR+GA D G STF +EM + ++K C + SL+++DE+GRGT T D
Sbjct: 821 EIRLSIFENVLTRIGAHDDIINGDSTFKVEMLDILHILKNCNKRSLLLLDEVGRGTGTHD 880
Query: 649 GFGMACSIARELASHRQ-PFTLFATHFHEIALLSRVIPTFRNVQVSALEQ----ED--NL 701
G ++ ++ + + P LF THF + + P RN + +E+ ED ++
Sbjct: 881 GIAISYALIKYFSELSDCPLILFTTHFPMLGEIKS--PLIRNYHMDYVEEQKTGEDWMSV 938
Query: 702 VLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKE 740
+ LY++K G SYG++ AK+A +D++ +A + +E
Sbjct: 939 IFLYKLKKGLTYNSYGMNVAKLARLDKDIINRAFSISEE 977
Score = 106 (42.4 bits), Expect = 2.5e-45, Sum P(2) = 2.5e-45
Identities = 42/139 (30%), Positives = 64/139 (46%)
Query: 201 LINYLELMNNEDNMNQFSIHSIDYSKYVHM--SSAVMSSLHVLPQQGSTSAQTYDSLLGI 258
L +++ NNE M SI+S SK +HM + SL + G SL +
Sbjct: 390 LYSHMVEYNNEQVMLIPSIYSPFASK-IHMLLDPNSLQSLDIFTHDGGKG-----SLFWL 443
Query: 259 LDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNIL---VNNTEARMNLHEYALRGLPD 315
LD RT G R+L +W+ +PL D+ I ER A+ + +NN+ +L++ L PD
Sbjct: 444 LDHTRTSFGLRMLREWILKPLVDVHQIEERLDAIECITSEINNSIFFESLNQM-LNHTPD 502
Query: 316 MQSLAMRIGRKKAGLKDCY 334
+ RI K+ Y
Sbjct: 503 LLRTLNRIMYGTTSRKEVY 521
>UNIPROTKB|Q7RKG5 [details] [associations]
symbol:PY02936 "G/T mismatch binding protein-related"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
KO:K08737 InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 EMBL:AABL01000828
RefSeq:XP_730891.1 ProteinModelPortal:Q7RKG5 STRING:Q7RKG5
GeneID:3830116 KEGG:pyo:PY02936 EuPathDB:PlasmoDB:PY02936
Uniprot:Q7RKG5
Length = 1261
Score = 421 (153.3 bits), Expect = 4.8e-45, Sum P(3) = 4.8e-45
Identities = 87/230 (37%), Positives = 144/230 (62%)
Query: 522 LVLNQCRHPIVELQGGVSYIPNDVYF---KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL 578
L+L HP+V ++IPN++Y K E + L+TGPNMGGKST +R +SV L
Sbjct: 976 LILENNIHPVVATLMP-NFIPNNIYMGCDKEKETTL-LLTGPNMGGKSTLLRQTAISVIL 1033
Query: 579 AQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIID 638
AQIG FVP +++VD+IFTR+G++D+ + G STF++E+++ + ++K+ T+ SL I+D
Sbjct: 1034 AQIGAFVPSTYCELTIVDKIFTRLGSSDNLFEGKSTFLVELEDISNLLKQSTKYSLAILD 1093
Query: 639 ELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL--E 696
ELGRGTS+FDG +A S +++ + +F+TH+H + + N +S +
Sbjct: 1094 ELGRGTSSFDGTAIALSTLEQISDVIKCRCIFSTHYHLLVEEVKHNTNISNYHMSLSIDD 1153
Query: 697 QEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLD 746
++ ++ LY+ G C KS+G+H AK+AG P++++E A + +E D
Sbjct: 1154 DQEKIIFLYKFIKGICPKSFGIHIAKLAGLPKEIIELAHEKSLLFENVTD 1203
Score = 125 (49.1 bits), Expect = 4.8e-45, Sum P(3) = 4.8e-45
Identities = 56/239 (23%), Positives = 101/239 (42%)
Query: 90 GVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRN- 148
G + D+ T +G DD+ L ++ Q P E L Y + N NK V + +N
Sbjct: 458 GFVVSDVATSYISVGYCNDDESRIELRTLLAQLCPAEIL----YCSKNINKEVLSIFKNI 513
Query: 149 KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELM 208
C N F +++ ++ + ++ ++ K E + I YL +
Sbjct: 514 PACPELTSVNSFP--NIIASLDEVNKYFENIPKALEAYKEQ--NSVICAFGGFIVYLRSL 569
Query: 209 NNEDNMNQF-SIHSIDYSK---YVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRT 264
+ + +F I D K Y+ + + + L +L Q S +T +SL +++ T
Sbjct: 570 LLDKKILKFCKIEFYDLFKKDNYMVLDATALKHLEILETQ---SGETKNSLYDYVNKTCT 626
Query: 265 PQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRI 323
G R + +W+ PL + D I +R V L N ++L L+ LPD++ L +I
Sbjct: 627 NFGARNMRRWVCSPLLNCDKINQRLDVVEFLRKNDHI-LSLIRLKLKKLPDIERLLNKI 684
Score = 60 (26.2 bits), Expect = 4.8e-45, Sum P(3) = 4.8e-45
Identities = 27/160 (16%), Positives = 66/160 (41%)
Query: 376 DRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFA-YRITMKLNNSIDDRYT---- 430
D DA+ K K+ +E + + K +K+ N A Y+ ++ +++ +
Sbjct: 789 DAIDAINKKEKD-IEKELNNILVDIKKILKIPNLKYVHAKYKYEIECPDNVPKSFLKEVE 847
Query: 431 ILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLA 490
I +G VR Q++ + + I++E + +++ + + + +++
Sbjct: 848 ITSVKKGFVRIQNEEIKNLVEMLEDIEQEKKDAIYPFFQKIFHLFYEHYEKYISACRLIS 907
Query: 491 QFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHP 530
+ D L +F+ + P RP + M + + N+ P
Sbjct: 908 ELDCLQAFAYVALNTSFPLTRPILHFMECENTMDNKSDDP 947
Score = 42 (19.8 bits), Expect = 7.7e-35, Sum P(2) = 7.7e-35
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 178 SELKNARLLPEMCLTTATHCLRSLINYLELMNNEDN 213
SEL + + L T+ R +++++E N DN
Sbjct: 907 SELDCLQAFAYVALNTSFPLTRPILHFMECENTMDN 942
Score = 39 (18.8 bits), Expect = 4.3e-36, Sum P(3) = 4.3e-36
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 280 KDLDAIVERHAAVNILVNNTEARMNLHEYAL 310
++LD + + + I +NN + R+ + +Y L
Sbjct: 218 QELDHLRNKFLNLPITLNNDKFRLYIEQYFL 248
>MGI|MGI:1860077 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=ISS;IDA] [GO:0001541 "ovarian
follicle development" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0007126 "meiosis" evidence=IDA;IMP] [GO:0007129 "synapsis"
evidence=IMP] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007292 "female gamete generation" evidence=IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:1860077 GO:GO:0005524 GO:GO:0005654
GO:GO:0007283 GO:GO:0006298 Reactome:REACT_120463 GO:GO:0001541
GO:GO:0030983 GO:GO:0007292 GO:GO:0007131 Reactome:REACT_27235
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 CTD:4438
HOGENOM:HOG000290656 HOVERGEN:HBG036910 OrthoDB:EOG4DR9BS
EMBL:AF298655 EMBL:AF178957 IPI:IPI00118045 RefSeq:NP_114076.1
UniGene:Mm.272226 ProteinModelPortal:Q99MT2 SMR:Q99MT2
STRING:Q99MT2 PhosphoSite:Q99MT2 PRIDE:Q99MT2
Ensembl:ENSMUST00000005630 GeneID:55993 KEGG:mmu:55993
InParanoid:Q99MT2 ChiTaRS:MSH4 NextBio:311726 Bgee:Q99MT2
CleanEx:MM_MSH4 Genevestigator:Q99MT2 GermOnline:ENSMUSG00000005493
Uniprot:Q99MT2
Length = 958
Score = 424 (154.3 bits), Expect = 5.1e-45, Sum P(2) = 5.1e-45
Identities = 128/437 (29%), Positives = 210/437 (48%)
Query: 387 EYLESTARRLNLVADK-TIKLE---NSPQGFAYRITMKL----NNSIDDRYTILDTVRGG 438
E ++ A + +A+K ++ L +S +GF ++T ++ + + + V+
Sbjct: 529 EIVDDIAGMIAQLAEKYSLPLRTSFSSSRGFFIQMTTDCAALSSDQLPSEFIKISKVKNS 588
Query: 439 VRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSF 498
F L N + Q RE IV +++ + L +LSD ++ D+L+SF
Sbjct: 589 YSFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSF 648
Query: 499 SIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVT 558
A C YVRP T +L + Q HPI+E + N+ Y G + ++T
Sbjct: 649 --AHACTLSDYVRPEF----TDTLAIKQGWHPILEKISAEKPVANNTYITEGS-NVLIIT 701
Query: 559 GPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMME 618
GPNM GKSTY++ I + +AQIG +VP + A+ + QIFTR+ D STFM E
Sbjct: 702 GPNMSGKSTYLKQIALCQIMAQIGSYVPAEYASFRIAAQIFTRISTDDDIETNSSTFMKE 761
Query: 619 MKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA 678
MKE A ++ + SL++IDELGRGT+T +G G++ ++ L S + FTLF THF E+
Sbjct: 762 MKEIAYILHNANDKSLILIDELGRGTNTEEGIGISYAVCEHLLSIKA-FTLFTTHFLELC 820
Query: 679 LLSRVIPTFRNV--QVSALEQ----EDNLVLLYQVKPGSCV-KSYGVHCAKMAGYPEDML 731
L + N+ +V ++ +D ++ Y++ G K+YG+ A+ + P ++
Sbjct: 821 HLDALYLNVENMHFEVQHVKNTSRNKDAILYTYKLSRGLTEEKNYGLKAAEASSLPSSIV 880
Query: 732 EQARDLMKEYEYSLDTKTPSGDETNNREEEYF---KTVQEGEYQMF--DFLQQCLSLSKQ 786
ARD+ + + S E + + Y + VQ D L+ LS K+
Sbjct: 881 LDARDITTQITRQILQNQRSSPEMDRQRAVYHLATRLVQAARNSQLEPDRLRTYLSNLKK 940
Query: 787 K---DTNRILHLQETQE 800
K D R + L E E
Sbjct: 941 KYAGDFPRAVGLPEKTE 957
Score = 131 (51.2 bits), Expect = 5.1e-45, Sum P(2) = 5.1e-45
Identities = 69/314 (21%), Positives = 132/314 (42%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLP-AEYLNDNKNKIVTILDR 147
+G+A +DL + + + + D+ Y+ + + SP E ++ + N K+ T++
Sbjct: 193 IGMASIDLKSPQIMLSQFADNTTYAKVITKLQVLSPLEIIMSNTACVVGNSTKLFTLITE 252
Query: 148 N--KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYL 205
N V T ++ F+E ++ + +L + S + CL A +L+ Y+
Sbjct: 253 NFKNVNFTTVQRKYFNETKGLEYIEQLCIAEFSSVLMEVQSRYYCLAAAA----ALLKYV 308
Query: 206 ELMNNEDNM-NQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRT 264
E + N I+ + + S+ +L +L + ++ +L G+L+ +T
Sbjct: 309 EFIQNSVYAPKSLKIYFQGSEQTAMIDSSSAQNLELLVN--NQDYRSNHTLFGVLNYTKT 366
Query: 265 PQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIG 324
G R L + +PL D++ I R V L+ + E L R L Q L++ +
Sbjct: 367 AGGSRRLRSNILEPLVDVETISMRLDCVQELLQDEELFFGLQSVISRFLDTEQLLSVLVQ 426
Query: 325 RKKAGLKDCYRVYEG-VSQLPKLISILESLVQ--NVEASNLNTILSSLQSLKMMDRK-DA 380
K +D E ++ L L LE LV+ V N +T L + D +
Sbjct: 427 IPK---QDTVNAAESKITNLIYLKHTLE-LVEPLKVTLKNCSTPLLRAYYGSLEDHRFGL 482
Query: 381 VMDKMKEYLESTAR 394
++DK+K + AR
Sbjct: 483 ILDKIKTVINDDAR 496
>UNIPROTKB|I3LHZ9 [details] [associations]
symbol:LOC100739477 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:FP476043
Ensembl:ENSSSCT00000028757 Uniprot:I3LHZ9
Length = 1334
Score = 427 (155.4 bits), Expect = 7.2e-45, Sum P(3) = 7.2e-45
Identities = 98/274 (35%), Positives = 155/274 (56%)
Query: 487 DVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGS---LVLNQCRHP-IVELQGGVSYIP 542
+ +A DVL+ + S P RP + G + L L RHP I + G +IP
Sbjct: 1027 ECIAVLDVLLCLANYSRGGDGPMCRPVILLPGEDTPPFLYLKGSRHPCITKTFFGDDFIP 1086
Query: 543 NDVYFKSGEVSFN-------LVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVV 595
ND+ E LVTGPNMGGKST +R G+ +AQ+GC+VP + ++ +
Sbjct: 1087 NDILIGCEEEEEENDKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPI 1146
Query: 596 DQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACS 655
D++FTR+GA+D G STF +E+ ETA+++ T +SLV++DELGRGT+TFDG +A +
Sbjct: 1147 DRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDELGRGTATFDGTAIANA 1206
Query: 656 IARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQE------DNLVLLYQVK 708
+ +ELA + + TLF+TH+H + S+ + +E E + + LY+
Sbjct: 1207 VVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFI 1266
Query: 709 PGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
G+C KSYG + A++A PE+++++ +E+E
Sbjct: 1267 KGACPKSYGFNAARLANLPEEVIQKGHRKAREFE 1300
Score = 106 (42.4 bits), Expect = 7.2e-45, Sum P(3) = 7.2e-45
Identities = 59/244 (24%), Positives = 109/244 (44%)
Query: 230 MSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERH 289
+ + +++L + +T+ +LL +D C TP G RLL QW+ PL + AI +R
Sbjct: 710 LDAVTLNNLEIF--LNATNGSPEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPYAISDRL 767
Query: 290 AAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISI 349
A+ L+ + + + L+ LPD++ L +I + LK P +I
Sbjct: 768 DAIEDLMVVPDKISEVVDL-LKKLPDLERLLSKIHNVGSPLKS--------QNHPDSRAI 818
Query: 350 LESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENS 409
+ + LS+L+ K++ + +M+++ + +S + L T++ +N
Sbjct: 819 MYEET-TYSKKKIIDFLSALEGFKVICKIRGIMEEVIDDFKSKILKQVL----TLQTKN- 872
Query: 410 PQGFAYRITMKLNN---SIDD---RYTILDTVRGGVRFQ-DDRLATANTQYQAIQREYET 462
P+G +T++LN + D R T L T + G D LA Q++ EY
Sbjct: 873 PEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLL-EYLE 931
Query: 463 HQQS 466
Q+S
Sbjct: 932 KQRS 935
Score = 72 (30.4 bits), Expect = 7.2e-45, Sum P(3) = 7.2e-45
Identities = 18/75 (24%), Positives = 31/75 (41%)
Query: 68 FSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKEC 127
+S L + E + + T GV VD KF++G+ DD + S ++ P +
Sbjct: 510 YSKYLLSLKEKEDDSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQV 569
Query: 128 LLPAEYLNDNKNKIV 142
L L+ I+
Sbjct: 570 LFEKGSLSTETKMIL 584
>UNIPROTKB|O66652 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224324 "Aquifex aeolicus VF5" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE000657 GenomeReviews:AE000657_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 PIR:H70327 RefSeq:NP_213212.1
ProteinModelPortal:O66652 GeneID:1192886 KEGG:aae:aq_308
PATRIC:20958222 HOGENOM:HOG000221406 OMA:ITQTVRD
BioCyc:AAEO224324:GJBH-228-MONOMER Uniprot:O66652
Length = 859
Score = 498 (180.4 bits), Expect = 9.4e-45, P = 9.4e-45
Identities = 141/499 (28%), Positives = 246/499 (49%)
Query: 276 KQPLKDLDAIVERHAAVNILVNNTEARMNLHE---YALRGLPDMQSLAMRIGRKKAGL-K 331
++ L + I+E A + LV+ + M Y L ++ L + + KA + K
Sbjct: 326 REALLKIRQILEGMADLERLVSKISSNMATPRELVYLKNSLKKVEELRLLLLELKAPIFK 385
Query: 332 DCYRVYEGVSQLPKLISILE-SLVQN--VEASNLNTILSSLQSLKMMDRKDAVMDKMKEY 388
+ + +E K+I+ +E +LV++ + I + + +D + D + Y
Sbjct: 386 EILQNFEDTK---KIINDIEKTLVEDPPLHVKEGGLIREGVNAY--LDELRFIRDNAETY 440
Query: 389 LESTARRLNLVAD-KTIKLE-NSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRL 446
L ++L +++K+ N G+ +T + + T+ RF + L
Sbjct: 441 LREYEKKLRQETGIQSLKIGYNKVMGYYIEVTKPNLKYVPSYFRRRQTLSNSERFTTEEL 500
Query: 447 ATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAP 506
+ + Q + + +E+ + + +A+ D + S +A
Sbjct: 501 QRLEEKILSAQTRINDLEYELYKELRERVVKELDKVGNNASAVAEVDFIQS--LAQIAYE 558
Query: 507 KPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSF-NLVTGPNMGGK 565
K + +P + G L++ + RHP++E + +Y+PND K SF +++TGPNM GK
Sbjct: 559 KDWAKPQIHE-GY-ELIIEEGRHPVIE-EFVENYVPNDT--KLDRDSFIHVITGPNMAGK 613
Query: 566 STYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATV 625
S+YIR +GV L+ IG F+P A I VVD +FTR+G+ D G+STFM EM E + +
Sbjct: 614 SSYIRQVGVLTLLSHIGSFIPARRAKIPVVDALFTRIGSGDVLALGVSTFMNEMLEVSNI 673
Query: 626 IKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIP 685
+ TE SLVI+DE+GRGTST+DG ++ +I + ++ + TL ATHF EI L I
Sbjct: 674 LNNATEKSLVILDEVGRGTSTYDGIAISKAIVKYISEKLKAKTLLATHFLEITELEGKIE 733
Query: 686 TFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSL 745
+N + + + + LY +K G S+G+ AK+AG PE+++E+AR +++E E
Sbjct: 734 GVKNYHMEVEKTPEGIRFLYILKEGKAEGSFGIEVAKLAGLPEEVVEEARKILRELEEKE 793
Query: 746 DTK---TPSGDETNNREEE 761
+ K P +ET + EE
Sbjct: 794 NKKEDIVPLLEETFKKSEE 812
>UNIPROTKB|I3L5Z8 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 EMBL:CU929611 EMBL:FP312934
Ensembl:ENSSSCT00000023892 Uniprot:I3L5Z8
Length = 902
Score = 426 (155.0 bits), Expect = 9.4e-45, Sum P(2) = 9.4e-45
Identities = 117/396 (29%), Positives = 194/396 (48%)
Query: 408 NSPQGFAYRITMK----LNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETH 463
+S +GF ++T N+ + + + V+ F L N + Q RE
Sbjct: 498 SSARGFFIQMTTDCTALFNDKLPSEFIKISKVKNSYSFTSTDLIKMNERCQESLREIYHM 557
Query: 464 QQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLV 523
IV +++ + L +LSD ++ D+L+SF A C YVRP T +L
Sbjct: 558 TYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSF--AHACTLSDYVRPEF----TDTLA 611
Query: 524 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC 583
+ Q HPI+E + N+ Y G +F ++TGPNM GKSTY++ I + +AQIG
Sbjct: 612 IKQGWHPILEKISVEKPVANNTYITEGS-NFVIITGPNMSGKSTYLKQIALCQIMAQIGS 670
Query: 584 FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRG 643
+VP + ++ + +QIFTR+ D STFM EMKE A ++ + SL++IDELGRG
Sbjct: 671 YVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRG 730
Query: 644 TSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNV--QVSALEQ---- 697
T+T +G G+ ++ L S + FTLFATHF E+ + + P N+ +V ++
Sbjct: 731 TNTEEGIGICYAVCEYLLSLKA-FTLFATHFLELCHIDVLYPNVENMYFEVQHVKNTSRN 789
Query: 698 EDNLVLLYQVKPGSCV-KSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETN 756
++ ++ Y++ G K+YG+ A+ + P ++ A+++ + + S E
Sbjct: 790 KEAILYTYKLSKGLTEEKNYGLKAAEASSLPPSIVLDAKEITTQITRQILQNQRSTPEME 849
Query: 757 NREEEYF---KTVQEGEYQMFD--FLQQCLSLSKQK 787
+ Y + VQ D L+ LS K+K
Sbjct: 850 RQRAVYHLATRLVQTARNSQLDPDSLRTYLSNLKRK 885
Score = 125 (49.1 bits), Expect = 9.4e-45, Sum P(2) = 9.4e-45
Identities = 53/241 (21%), Positives = 102/241 (42%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLP-AEYLNDNKNKIVTILDR 147
+G+A +DL + + + + D+ Y+ + + SP E ++ + N K+ T++
Sbjct: 131 IGMASIDLKSPQIILSQFADNTTYAKVITKLKILSPLEIIMSNTACVVGNSTKLFTLITE 190
Query: 148 N--KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYL 205
N V T ++ F+E ++ + +L + S + CL +L+ Y+
Sbjct: 191 NFKNVNFTTIQRKYFNETKGLEYIEQLCTAEFSTVLMEVQSKYYCLAAVA----ALLKYI 246
Query: 206 ELMNNE---DNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRC 262
E + N + + + + SSA L ++ Q S + T L G+L+
Sbjct: 247 EFIQNSLYAPKSLKICFQGSEQTAMIDSSSAQNLEL-LINNQDSRNNHT---LFGVLNYT 302
Query: 263 RTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMR 322
+TP G R L + +PL D++ I R V L+ + E L R L Q L++
Sbjct: 303 KTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVIARFLDTEQLLSVL 362
Query: 323 I 323
+
Sbjct: 363 V 363
>UNIPROTKB|F1S9R2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:CU929611
EMBL:FP312934 Ensembl:ENSSSCT00000004176 Uniprot:F1S9R2
Length = 934
Score = 426 (155.0 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 117/396 (29%), Positives = 194/396 (48%)
Query: 408 NSPQGFAYRITMK----LNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETH 463
+S +GF ++T N+ + + + V+ F L N + Q RE
Sbjct: 530 SSARGFFIQMTTDCTALFNDKLPSEFIKISKVKNSYSFTSTDLIKMNERCQESLREIYHM 589
Query: 464 QQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLV 523
IV +++ + L +LSD ++ D+L+SF A C YVRP T +L
Sbjct: 590 TYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSF--AHACTLSDYVRPEF----TDTLA 643
Query: 524 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC 583
+ Q HPI+E + N+ Y G +F ++TGPNM GKSTY++ I + +AQIG
Sbjct: 644 IKQGWHPILEKISVEKPVANNTYITEGS-NFVIITGPNMSGKSTYLKQIALCQIMAQIGS 702
Query: 584 FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRG 643
+VP + ++ + +QIFTR+ D STFM EMKE A ++ + SL++IDELGRG
Sbjct: 703 YVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRG 762
Query: 644 TSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNV--QVSALEQ---- 697
T+T +G G+ ++ L S + FTLFATHF E+ + + P N+ +V ++
Sbjct: 763 TNTEEGIGICYAVCEYLLSLKA-FTLFATHFLELCHIDVLYPNVENMYFEVQHVKNTSRN 821
Query: 698 EDNLVLLYQVKPGSCV-KSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETN 756
++ ++ Y++ G K+YG+ A+ + P ++ A+++ + + S E
Sbjct: 822 KEAILYTYKLSKGLTEEKNYGLKAAEASSLPPSIVLDAKEITTQITRQILQNQRSTPEME 881
Query: 757 NREEEYF---KTVQEGEYQMFD--FLQQCLSLSKQK 787
+ Y + VQ D L+ LS K+K
Sbjct: 882 RQRAVYHLATRLVQTARNSQLDPDSLRTYLSNLKRK 917
Score = 125 (49.1 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 53/241 (21%), Positives = 102/241 (42%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLP-AEYLNDNKNKIVTILDR 147
+G+A +DL + + + + D+ Y+ + + SP E ++ + N K+ T++
Sbjct: 169 IGMASIDLKSPQIILSQFADNTTYAKVITKLKILSPLEIIMSNTACVVGNSTKLFTLITE 228
Query: 148 N--KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYL 205
N V T ++ F+E ++ + +L + S + CL +L+ Y+
Sbjct: 229 NFKNVNFTTIQRKYFNETKGLEYIEQLCTAEFSTVLMEVQSKYYCLAAVA----ALLKYI 284
Query: 206 ELMNNE---DNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRC 262
E + N + + + + SSA L ++ Q S + T L G+L+
Sbjct: 285 EFIQNSLYAPKSLKICFQGSEQTAMIDSSSAQNLEL-LINNQDSRNNHT---LFGVLNYT 340
Query: 263 RTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMR 322
+TP G R L + +PL D++ I R V L+ + E L R L Q L++
Sbjct: 341 KTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVIARFLDTEQLLSVL 400
Query: 323 I 323
+
Sbjct: 401 V 401
>UNIPROTKB|E1B9Q4 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0032405
"MutLalpha complex binding" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000400 "four-way junction DNA
binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0043531 GO:GO:0003682 GO:GO:0016887
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0045910 SMART:SM00293 GO:GO:0016446
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 CTD:2956 GeneTree:ENSGT00550000075024
EMBL:DAAA02030744 IPI:IPI00714742 RefSeq:NP_001179666.1
UniGene:Bt.98842 Ensembl:ENSBTAT00000001867 GeneID:540526
KEGG:bta:540526 NextBio:20878683 Uniprot:E1B9Q4
Length = 1360
Score = 426 (155.0 bits), Expect = 1.3e-44, Sum P(3) = 1.3e-44
Identities = 98/274 (35%), Positives = 157/274 (57%)
Query: 487 DVLAQFDVLVSFSIASTCAPKPYVRPC-MKPMGTGS--LVLNQCRHP-IVELQGGVSYIP 542
+ +A DVL+ + S P RP + P L L RHP I + G +IP
Sbjct: 1051 ECIAVLDVLLCLTNYSRGGDGPMCRPIILLPEEDTPPFLDLKGSRHPCITKTFFGDDFIP 1110
Query: 543 NDVYF-------KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVV 595
ND+ ++G+ LVTGPNMGGKST +R G+ +AQ+GC+VP + ++ +
Sbjct: 1111 NDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLAIMAQMGCYVPAEVCRLTPI 1170
Query: 596 DQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACS 655
D++FTR+GA+D G STF +E+ ETA+++ T +SLV++DELGRGT+TFDG +A +
Sbjct: 1171 DRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDELGRGTATFDGTAIANA 1230
Query: 656 IARELASHRQPFTLFATHFHEIAL-LSRVIPTFRNVQVSALEQE------DNLVLLYQVK 708
+ +ELA + + TLF+TH+H + S+ + +E E + + LY+
Sbjct: 1231 VVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFI 1290
Query: 709 PGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
G+C KSYG + A++A PE+++++ +E+E
Sbjct: 1291 KGACPKSYGFNAARLANLPEEVIQKGHRKAREFE 1324
Score = 107 (42.7 bits), Expect = 1.3e-44, Sum P(3) = 1.3e-44
Identities = 60/244 (24%), Positives = 108/244 (44%)
Query: 230 MSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERH 289
+ + +++L + T+ T +LL +D C TP G RLL QW+ PL + AI +R
Sbjct: 734 LDAVTLNNLEIF--LNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPHAINDRL 791
Query: 290 AAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISI 349
A+ L+ + + + L+ LPD++ L +I + LK P +I
Sbjct: 792 DAIEDLMVVPDKISEVVDL-LKKLPDLERLLSKIHNVGSPLKS--------QNHPDSRAI 842
Query: 350 LESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENS 409
+ + LS+L+ K++ + +M+++ + +S + L T++ + S
Sbjct: 843 MYEET-TYSKKKIIDFLSALEGFKVICKIIGIMEEVIDDFKSKILKQVL----TLQTK-S 896
Query: 410 PQGFAYRITMKLNN---SIDD---RYTILDTVRGGVRFQ-DDRLATANTQYQAIQREYET 462
P+G +T +LN + D R T L T + G D LA Q++ EY
Sbjct: 897 PEGRFPDLTSELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLL-EYLE 955
Query: 463 HQQS 466
Q+S
Sbjct: 956 KQRS 959
Score = 70 (29.7 bits), Expect = 1.3e-44, Sum P(3) = 1.3e-44
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 68 FSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKEC 127
+S L + E + + T GV VD +F++G+ DD + S ++ P +
Sbjct: 534 YSKYLLSLKEKEEESSGHTRVYGVCFVDTSLGRFFIGQFSDDRHCSRFRTLVAHYPPVQV 593
Query: 128 LLPAEYLN-DNK 138
L L+ D K
Sbjct: 594 LFEKGNLSMDTK 605
Score = 39 (18.8 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 20/87 (22%), Positives = 37/87 (42%)
Query: 254 SLLGILDRCRTPQGHRLLAQW----MKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYA 309
SLL L++ R+ G R + W + L+ + + R+ + +T + Y
Sbjct: 949 SLLEYLEKQRSRIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEYELKST--KKGCKRYW 1006
Query: 310 LRGLPD-MQSLAMRIGRKKAGLKDCYR 335
+ + + +L R+ A LKDC R
Sbjct: 1007 TKTIEKKLGNLINAEERRDASLKDCMR 1033
>UNIPROTKB|O15457 [details] [associations]
symbol:MSH4 "MutS protein homolog 4" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0001541
"ovarian follicle development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007292 "female gamete
generation" evidence=IEA] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IRD] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CH471059 GO:GO:0007283
GO:GO:0006298 EMBL:AL357314 Reactome:REACT_111183 GO:GO:0001541
GO:GO:0030983 EMBL:AL445464 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 KO:K08740 OMA:GFFIQMT Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U89293 EMBL:AF104243
EMBL:AY268350 EMBL:BC033030 IPI:IPI00289914 RefSeq:NP_002431.2
UniGene:Hs.216639 ProteinModelPortal:O15457 SMR:O15457
IntAct:O15457 STRING:O15457 PhosphoSite:O15457 PRIDE:O15457
DNASU:4438 Ensembl:ENST00000263187 GeneID:4438 KEGG:hsa:4438
UCSC:uc001dhd.2 CTD:4438 GeneCards:GC01P076262 HGNC:HGNC:7327
HPA:HPA028117 MIM:602105 neXtProt:NX_O15457 PharmGKB:PA31135
HOGENOM:HOG000290656 HOVERGEN:HBG036910 InParanoid:O15457
OrthoDB:EOG4DR9BS PhylomeDB:O15457 GenomeRNAi:4438 NextBio:17297
ArrayExpress:O15457 Bgee:O15457 CleanEx:HS_MSH4
Genevestigator:O15457 GermOnline:ENSG00000057468 Uniprot:O15457
Length = 936
Score = 421 (153.3 bits), Expect = 2.1e-44, Sum P(2) = 2.1e-44
Identities = 106/341 (31%), Positives = 177/341 (51%)
Query: 408 NSPQGFAYRITMKL----NNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETH 463
+S +GF ++T ++ + + + V+ F L N + Q RE
Sbjct: 532 SSARGFFIQMTTDCIALPSDQLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHM 591
Query: 464 QQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLV 523
IV +++ + L +LSD ++ D+L+SF A C YVRP T +L
Sbjct: 592 TYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSF--AHACTLSDYVRPEF----TDTLA 645
Query: 524 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC 583
+ Q HPI+E I N+ Y G +F ++TGPNM GKSTY++ I + +AQIG
Sbjct: 646 IKQGWHPILEKISAEKPIANNTYVTEGS-NFLIITGPNMSGKSTYLKQIALCQIMAQIGS 704
Query: 584 FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRG 643
+VP + ++ + QIFTR+ D STFM EMKE A ++ + SL++IDELGRG
Sbjct: 705 YVPAEYSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRG 764
Query: 644 TSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNV--QVSALEQ---- 697
T+T +G G+ ++ L S + FTLFATHF E+ + + P N+ +V ++
Sbjct: 765 TNTEEGIGICYAVCEYLLSLKA-FTLFATHFLELCHIDALYPNVENMHFEVQHVKNTSRN 823
Query: 698 EDNLVLLYQVKPGSCV-KSYGVHCAKMAGYPEDMLEQARDL 737
++ ++ Y++ G K+YG+ A+++ P ++ A+++
Sbjct: 824 KEAILYTYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEI 864
Score = 128 (50.1 bits), Expect = 2.1e-44, Sum P(2) = 2.1e-44
Identities = 70/316 (22%), Positives = 129/316 (40%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLP-AEYLNDNKNKIVTILDR 147
+G+A +DL + + + D+ Y+ + + SP E ++ N K+ T++
Sbjct: 171 IGMASIDLKNPQIILSQFADNTTYAKVITKLKILSPLEIIMSNTACAVGNSTKLFTLITE 230
Query: 148 N--KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYL 205
N V T ++ F+E ++ + +L + S + CL +L+ Y+
Sbjct: 231 NFKNVNFTTIQRKYFNETKGLEYIEQLCIAEFSTVLMEVQSKYYCLAAVA----ALLKYV 286
Query: 206 ELMNNE---DNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRC 262
E + N + + + + SSA L ++ Q + T L G+L+
Sbjct: 287 EFIQNSVYAPKSLKICFQGSEQTAMIDSSSAQNLEL-LINNQDYRNNHT---LFGVLNYT 342
Query: 263 RTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMR 322
+TP G R L + +PL D++ I R V L+ + E L R L Q L++
Sbjct: 343 KTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVISRFLDTEQLLSVL 402
Query: 323 IGRKKAGLKDCYRVYEG-VSQLPKLISILESLVQ--NVEASNLNTILSSLQSLKMMDRK- 378
+ K +D E ++ L L LE LV + N NT L + D++
Sbjct: 403 VQIPK---QDTVNAAESKITNLIYLKHTLE-LVDPLKIAMKNCNTPLLRAYYGSLEDKRF 458
Query: 379 DAVMDKMKEYLESTAR 394
+++K+K + AR
Sbjct: 459 GIILEKIKTVINDDAR 474
>UNIPROTKB|Q759V4 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:284811 "Ashbya gossypii ATCC 10895" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0005737 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 EMBL:AE016817 GenomeReviews:AE016817_GR
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 HSSP:Q56215
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
RefSeq:NP_984265.1 ProteinModelPortal:Q759V4 STRING:Q759V4
EnsemblFungi:AAS52089 GeneID:4620427 KEGG:ago:AGOS_ADR168C
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M PhylomeDB:Q759V4
Uniprot:Q759V4
Length = 1032
Score = 428 (155.7 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
Identities = 110/307 (35%), Positives = 167/307 (54%)
Query: 440 RFQDDRLA--TANTQY--QAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVL 495
RFQ A A QY + +Q +S ++ + G YT +L + L+ +D +
Sbjct: 681 RFQTPGTAKLVAKLQYHKELLQDLALQEYESFIKRITG---EYT-SLRKAILHLSTYDCI 736
Query: 496 VSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFN 555
+S +A+T YVRP V+N R+PI+E V Y+PNDV
Sbjct: 737 LS--LAATSCNVDYVRPKFNTAPQCINVING-RNPIIESLD-VRYMPNDVNLNREGKKIM 792
Query: 556 LVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTF 615
++TGPNMGGKS+YIR + + V +AQIGC+VP A S+ DQIFTR+GA D+ R STF
Sbjct: 793 IITGPNMGGKSSYIRQVALLVIMAQIGCYVPAQEAEFSIFDQIFTRIGAYDNLLRNDSTF 852
Query: 616 MMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELAS-HRQ-PFTLFATH 673
+EM E +++ TENSL+++DE+GRGT T DG ++ ++ R H P LF TH
Sbjct: 853 KIEMTEMVQILRSSTENSLLLLDEVGRGTGTHDGISISYALLRYFIELHNACPLILFITH 912
Query: 674 FHEIALLSRVIPTFRNVQVSALEQE---DN---LVLLYQVKPGSCVKSYGVHCAKMAGYP 727
+ + + P N +S +E++ +N +V LY++K G SYG++ AK+A
Sbjct: 913 YASLGSIRS--PILGNYHMSYIEEKRPGENWPSVVFLYKLKEGRAHNSYGLNVAKLADIQ 970
Query: 728 EDMLEQA 734
++ +A
Sbjct: 971 TGIINRA 977
Score = 120 (47.3 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
Identities = 48/166 (28%), Positives = 77/166 (46%)
Query: 204 YLELMNNEDNMNQFSIHSIDYSKYVHM--SSAVMSSLHVLPQQGSTSAQTYDSLLGILDR 261
YL NE ++ F + + HM S+ + SL + + ST + SLL +LD
Sbjct: 396 YLTNFKNE-SLLFFKENFKPFCSKTHMILPSSAIESLDIF--ENSTDRSSKGSLLWVLDH 452
Query: 262 CRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNIL---VNNT--EARMNLHEYALRGLPDM 316
RT G R L W+ +PL ++D I +R AV + V N E+ N+ LR D+
Sbjct: 453 TRTNYGLRNLKNWIAKPLINIDQIQQRLDAVQCISTEVGNIFIESLNNM----LRDGQDL 508
Query: 317 QSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQ-NVEASN 361
+ + RI K ++ Y ++QL L S ++ NV ++N
Sbjct: 509 ERILNRIAYGKTSRREVYLFLRELTQLATLFSSHHRYIETNVLSAN 554
>UNIPROTKB|Q75D87 [details] [associations]
symbol:AGOS_ABR137W "ABR137Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] [GO:0043504
"mitochondrial DNA repair" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005739 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE016815 GenomeReviews:AE016815_GR GO:GO:0008094
GO:GO:0043504 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000157750
OrthoDB:EOG42591V SUPFAM:SSF53150 GO:GO:0032300 GO:GO:0032139
RefSeq:NP_983084.2 STRING:Q75D87 EnsemblFungi:AAS50908
GeneID:4619194 KEGG:ago:AGOS_ABR137W Uniprot:Q75D87
Length = 955
Score = 423 (154.0 bits), Expect = 4.5e-44, Sum P(2) = 4.5e-44
Identities = 102/272 (37%), Positives = 163/272 (59%)
Query: 478 YTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVE--LQ 535
Y+ + ++ + DVL SF+I ++ K V C + + +L + RH +VE LQ
Sbjct: 686 YSTEIRAIAQTVDYLDVLSSFAILAS--EKNLV--CPQVDESSALEIVGGRHLVVEDGLQ 741
Query: 536 GGV--SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATIS 593
++ ND ++G++ +VTGPNMGGKST++R + V LAQIGC+VPC SA I
Sbjct: 742 SRAPGNFTANDCSLQNGDIW--IVTGPNMGGKSTFLRQTAIIVILAQIGCYVPCASAHIG 799
Query: 594 VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMA 653
+VD+IF+RVG+AD Y +STFM+EM ET+ ++K T+ SL I+DE+GRGT+ DG G+A
Sbjct: 800 LVDKIFSRVGSADDLYNDMSTFMVEMLETSFMLKGATKRSLAILDEIGRGTNAEDGVGIA 859
Query: 654 CSIARELASHRQPFTLFATHF-HEIA-LLSRVIPTFRNVQVSALE---QEDNLVLLY--Q 706
+ + + + LFA+HF E++ L+ + +P +V +E N Y +
Sbjct: 860 YTTLHHMLTKNRCRALFASHFGRELSELVEQHLPPGARKRVHFYRTNVREHNGRSFYDHK 919
Query: 707 VKPGSCVKSYGVHCAKMAGYPEDMLEQARDLM 738
+ PG C+ S + A+MAG+P++ L+ AR ++
Sbjct: 920 ITPGICLSSDAIRVAQMAGFPQEALDVARRVL 951
Score = 123 (48.4 bits), Expect = 4.5e-44, Sum P(2) = 4.5e-44
Identities = 69/317 (21%), Positives = 124/317 (39%)
Query: 64 NLSCFSHILCVISEDKTLETVLTNT--VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQ 121
NL +L V D+ +E + + VG++ D+ T + ++ ++ L + I +
Sbjct: 192 NLQENQFLLSVEFPDRCMEKLSDPSIKVGLSWCDISTGELFVQQVQ----LKGLISAITK 247
Query: 122 KSPKECLLPAE---YLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRF--D 176
P+E LL + Y N N +++ K + K S M+ + L F +
Sbjct: 248 IKPREILLSEDLLAYQIQNGNWYPELVEFKKYFIKYYKTP--SRHRTMETFSHLFAFGAN 305
Query: 177 DSELKNARLLPEMCLTTATHCLRSLINYLELMNNEDNMN-QFSIHSIDYSKYVHMSSAVM 235
++ +N ++ T LR+ + Y+E E N F S+ + + S
Sbjct: 306 NASKRNLDIVLHSLSQKETAALRANLTYIEQHLPEMLANLAFPKRSLTTDS-MQIDSRTS 364
Query: 236 SSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNIL 295
++L + SLL + R TP G RLL QW+ P LD I +R V +
Sbjct: 365 AALEL--HNTFRDNLKRGSLLSAIRRTVTPSGTRLLTQWLSAPSMHLDEIKQRQNLVRLF 422
Query: 296 VNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQ 355
+ N NL L+ DM + + K+ ++ + + Q + + S
Sbjct: 423 MQNPFVTDNLIAQ-LKATADMTRILQKFSFKRGDAAHLLQMAQSLQQCSAIGDTIHSFTT 481
Query: 356 NVEAS-NLNTILSSLQS 371
S +L +L L S
Sbjct: 482 EGPISKDLAAVLDKLSS 498
>TAIR|locus:2130913 [details] [associations]
symbol:MSH4 "AT4G17380" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000794 "condensed nuclear chromosome" evidence=IDA]
[GO:0007129 "synapsis" evidence=RCA;IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007067 "mitosis"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0032204 "regulation of
telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 SMART:SM00533 SMART:SM00534 GO:GO:0009506
GO:GO:0005524 EMBL:CP002687 GO:GO:0003684 EMBL:Z97343 GO:GO:0030983
GO:GO:0008094 GO:GO:0051026 EMBL:AL161546 GO:GO:0045143
GO:GO:0043073 GO:GO:0000795 GO:GO:0007128 KO:K08740 OMA:GFFIQMT
SUPFAM:SSF48334 GO:GO:0032300 EMBL:AY646927 IPI:IPI00525244
IPI:IPI00538174 PIR:B71443 RefSeq:NP_193469.2 UniGene:At.24376
UniGene:At.71316 ProteinModelPortal:F4JP48 SMR:F4JP48 IntAct:F4JP48
EnsemblPlants:AT4G17380.1 GeneID:827450 KEGG:ath:AT4G17380
TAIR:At4g17380 GO:GO:0010777 Uniprot:F4JP48
Length = 792
Score = 467 (169.5 bits), Expect = 6.3e-44, Sum P(2) = 6.3e-44
Identities = 125/372 (33%), Positives = 202/372 (54%)
Query: 376 DRKDAVMDKMKEYLESTARRLNLVADKTIKLE-NSPQGFAYRITMK-LNNSIDDRYTILD 433
D +A+ + +Y E NL +KL N+ QGF +RI K + + +++T
Sbjct: 377 DTSEAIHNLASKYREE----FNL---PNLKLPFNNRQGFFFRIPQKEVQGKLPNKFT--Q 427
Query: 434 TVRGG--VRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQ 491
V+ G + LA+ N + ++ E ++ +E ++ L L++VL
Sbjct: 428 VVKHGKNIHCSSLELASLNVRNKSAAGECFIRTETCLEALMDAIREDISALTLLAEVLCL 487
Query: 492 FDVLVSFSIASTCAPKP---YVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFK 548
D++V+ S A T + KP Y RP + +G L ++ RHPI+E ++ N + F
Sbjct: 488 LDMIVN-SFAHTISTKPVDRYSRPELTD--SGPLAIDAGRHPILESIHN-DFVSNSI-FM 542
Query: 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQ 608
S + +V GPNM GKSTY++ + + V LAQIGC+VP ATI VVD+IFTR+G D+
Sbjct: 543 SEATNMLVVMGPNMSGKSTYLQQVCLVVILAQIGCYVPARFATIRVVDRIFTRMGTMDNL 602
Query: 609 YRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFT 668
STFM EM+ETA +++ T SL+++DELGR TS+ DG MA S L S + +T
Sbjct: 603 ESNSSTFMTEMRETAFIMQNVTNRSLIVMDELGRATSSSDGLAMAWSCCEYLLSLKA-YT 661
Query: 669 LFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSC-VKSYGVHCAKMAGYP 727
+FATH +A L+ + P + + +++ L +Q++ G+ V YG+ A++AG P
Sbjct: 662 VFATHMDSLAELATIYPNVKVLHFYVDIRDNRLDFKFQLRDGTLHVPHYGLLLAEVAGLP 721
Query: 728 EDMLEQARDLMK 739
+++ AR + K
Sbjct: 722 STVIDTARIITK 733
Score = 68 (29.0 bits), Expect = 6.3e-44, Sum P(2) = 6.3e-44
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGL 313
SL + +T G RLL + QPLKD++ I R ++ L++N + L + LR
Sbjct: 194 SLFQMFKTTKTAGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQ-VLRKF 252
Query: 314 P 314
P
Sbjct: 253 P 253
>UNIPROTKB|E1C1F8 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074949 EMBL:AADN02047884 EMBL:AADN02047885
EMBL:AADN02047886 EMBL:AADN02047887 EMBL:AADN02047888
EMBL:AADN02047889 IPI:IPI00586936 Ensembl:ENSGALT00000025135
OMA:LLLDCQR Uniprot:E1C1F8
Length = 598
Score = 469 (170.2 bits), Expect = 7.8e-44, P = 7.8e-44
Identities = 131/438 (29%), Positives = 228/438 (52%)
Query: 342 QLPKLISILESLVQ--NVEASNLNT---ILSSLQSLKMM-DRKDAVMD---KMKEYLEST 392
++P+L+S ++ ++ N EA+ + L ++ +K+ ++D K++ +L
Sbjct: 133 EIPELLSPVKHYLKILNEEAAKTGDKTQLFKDLTDFPVIRKKKEEILDVLSKIQLHLLEI 192
Query: 393 ARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQ 452
+++ + + + + S Q F + +S+ + ++ + + RF + T N
Sbjct: 193 RKQIKNPSAEYVTV--SGQEFLVEVKNSHISSVPSNWVMVSSTKAVSRFHSPFI-TEN-- 247
Query: 453 YQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDV---LAQFDVLVSFSIASTCAPKPY 509
Y+ + + E E + +++ + +S LA D L FS+A Y
Sbjct: 248 YRHLNQLREQLVLDCGAEWLRFLDHFSEHYHTVSKAIGHLATIDCL--FSLAQAAKQGDY 305
Query: 510 VRPCMKPMGTGSLVLNQCRHPIVELQGGVS--YIPNDVYF-KSGEVSFNLVTGPNMGGKS 566
RP +K +++ RHP++++ G Y+PN + GE ++TGPNMGGKS
Sbjct: 306 CRPVVKD-NQQEIIIKNGRHPVIDVLLGEQDQYVPNTTNLSRDGE-RVMIITGPNMGGKS 363
Query: 567 TYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI 626
+YI+ + + +AQIG +VP + +T+ +VD IFTR+GAAD+ Y+G STFM E+ +TA +I
Sbjct: 364 SYIKQVALITVMAQIGSYVPAEESTVGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEII 423
Query: 627 KKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIP- 685
++ T SLVI+DELGRGTST DG +A + + + TLF TH+ + L V P
Sbjct: 424 RRATSRSLVILDELGRGTSTHDGIAIAYATLEHFITDVESLTLFVTHYPSVCELENVYPG 483
Query: 686 -------TFR-NVQVSA----LEQEDN---LVLLYQVKPGSCVKSYGVHCAKMAGYPEDM 730
F N + SA E+E+N + LYQ+ G +SYG++ AK+A PE++
Sbjct: 484 KVGNYHMAFLVNKEESAEQKGSEEEENPEFVTFLYQITKGVTARSYGLNVAKLADIPEEI 543
Query: 731 LEQARDLMKEYEYSLDTK 748
L++A KE E ++ K
Sbjct: 544 LKKAAHKSKELERLVNVK 561
Score = 123 (48.4 bits), Expect = 0.00057, P = 0.00057
Identities = 46/169 (27%), Positives = 83/169 (49%)
Query: 235 MSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNI 294
M +L +L Q T +T SLL +LD +T G R L +W+ QPL I R AV+
Sbjct: 1 MKNLEIL--QNQTDLKTKGSLLWVLDHTKTSFGRRRLKKWVIQPLMKCSEINARLDAVSE 58
Query: 295 LVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLV 354
++ + + + L LPD++ + KK ++ + + VS L +L S +++LV
Sbjct: 59 ILLSESSVFGQIQNLLCKLPDLERGLCSVFHKKCSTQEFFLI---VSTLSRLDSEIQALV 115
Query: 355 QNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKT 403
+ S++ + L LQ+ +++ + ++ +K YL+ DKT
Sbjct: 116 PVIH-SHVKSPL--LQNA-LLEIPE-LLSPVKHYLKILNEEAAKTGDKT 159
>CGD|CAL0000288 [details] [associations]
symbol:orf19.3608 species:5476 "Candida albicans" [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000735 "removal of nonhomologous ends"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032135 "DNA insertion or deletion binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0000403 "Y-form DNA binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0005634 GO:GO:0006298 GO:GO:0030983
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG0249 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HSSP:P23909 KO:K08736
RefSeq:XP_714452.1 RefSeq:XP_714501.1 ProteinModelPortal:Q59Y41
STRING:Q59Y41 GeneID:3643846 GeneID:3643889 KEGG:cal:CaO19.11091
KEGG:cal:CaO19.3608 Uniprot:Q59Y41
Length = 1037
Score = 433 (157.5 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 110/348 (31%), Positives = 189/348 (54%)
Query: 420 KLNNSIDDR-YTILDTVRGGVRFQDDRLATANTQYQAIQREYE-----THQQSIVEEVIG 473
KL+ +DD+ Y ++ + + R++ + T+Y + + +E T + +
Sbjct: 662 KLSKILDDKDYILIKSTQTITRYRKKSV----TEYLKLLQYHEEMLIKTCDEEFQNFLKD 717
Query: 474 ISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVE 533
+ + YT + + LA FD L+S + S+ P Y RP + ++++ Q RHP +E
Sbjct: 718 LDSNYTLFYKIIKN-LAIFDCLLSLTTTSSL-PN-YTRPTLIDDDL-TILVKQARHPTIE 773
Query: 534 LQGGVSYIPNDVYFKSGEVSFN---LVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSA 590
Q +Y+ ND+ E N ++TGPNMGGKS+Y++++ + + QIGC++PC +A
Sbjct: 774 -QLRPNYVANDININI-EYDKNRVLIITGPNMGGKSSYVKTVALLTVMTQIGCYLPCQNA 831
Query: 591 TISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGF 650
T+ + D IF R+GA D+ +G STFMMEM + +I + SL+I+DE+GRGT T DG
Sbjct: 832 TMGIFDSIFIRMGANDNILKGYSTFMMEMLQCKNIISMMSNRSLIILDEIGRGTGTIDGI 891
Query: 651 GMACSIARELA-SHRQPFTLFATHFHEIALLSRVIPT--FRNVQVSALEQEDN------- 700
+A SI + L S +P LF TH+ I +L + P N + E ++N
Sbjct: 892 SLAYSILKYLIESEFKPLVLFITHYPSIHVLEQEYPNQLVVNYHMGYQEIKNNTPGEIPE 951
Query: 701 LVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTK 748
++ LY + G SYG++ AK+AG D+++QA + ++ + ++ K
Sbjct: 952 IIFLYNLCRGVVNNSYGLNVAKLAGISHDIIKQAYRVSEKVKSDIELK 999
Score = 110 (43.8 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 53/239 (22%), Positives = 103/239 (43%)
Query: 70 HILCV--ISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKEC 127
+I+C+ +SE + + +G I D DD LE ++ P E
Sbjct: 253 YIVCINEVSEKQFAIVAVQPLIGEVIFD---------SFKDDISRQELETRLLYLRPVEV 303
Query: 128 LL----PAEYLNDNKNKIVTILDRN-KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKN 182
++ +E ++ + +++ N + +E E+ ++ N + S+ N
Sbjct: 304 IVITNGSSEQISGPTLMTLKLINHNCNIIHKSGSPSENGNENENENENEAIEAIMSKYLN 363
Query: 183 ARLLPEMCLTTATHCLRSLINYLELMNNEDNM-NQFSI-HSI----DYSKYVHMSSAVMS 236
+L+ + + ++ YL L NE + N F+I +I D KY+ + + ++
Sbjct: 364 EKLVEYYSINFSIP-IQQCFEYLLLYLNEFKLTNIFTIPENITNFQDSKKYMILPANTLN 422
Query: 237 SLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNIL 295
SL + +T T SL +L+ +T G RLL +W+ +PL + I +RH A+ L
Sbjct: 423 SLEIFTN--TTDHTTKGSLFKLLNNTKTIFGSRLLQKWVSRPLVHIQDIKDRHQAIEDL 479
Score = 39 (18.8 bits), Expect = 3.3e-36, Sum P(2) = 3.3e-36
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 95 DLDTKKFYMGEIPDDDYYSNLEAII 119
D++ +F+ IPD + +L+ I+
Sbjct: 156 DIEDTRFHYCSIPDTRLHIHLQRIL 180
>RGD|1309190 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000793 "condensed chromosome" evidence=ISO] [GO:0000794
"condensed nuclear chromosome" evidence=ISO] [GO:0000795
"synaptonemal complex" evidence=ISO;IBA] [GO:0001541 "ovarian
follicle development" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0007126 "meiosis" evidence=ISO] [GO:0007129
"synapsis" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007283 "spermatogenesis"
evidence=IEA;ISO] [GO:0007292 "female gamete generation"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008150 "biological_process" evidence=ND]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1309190 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 IPI:IPI00870836 Ensembl:ENSRNOT00000014106
Uniprot:F1M9U4
Length = 958
Score = 417 (151.9 bits), Expect = 1.7e-43, Sum P(2) = 1.7e-43
Identities = 142/509 (27%), Positives = 232/509 (45%)
Query: 327 KAGLKDC----YRVYEGVSQLPKLISILESL--VQNVEAS------NLNTILSSLQSLKM 374
K LK+C R Y G + + ILE + V N +A N+ T +
Sbjct: 457 KVALKNCSTPLLRAYYGSLEDHRFGLILEKIKTVINDDARYMKGCLNMRTQKCYAVRSNI 516
Query: 375 MDRKDAVMDKMKEYLESTARRLNLVADK-TIKLE---NSPQGFAYRITMKL----NNSID 426
+ D E ++ A ++ +A+K ++ L +S +GF ++T ++ +
Sbjct: 517 SEFLDIARRTYTEIVDDIAGMISQLAEKYSLPLRTSFSSARGFFIQMTTDCAALSSDQLP 576
Query: 427 DRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLS 486
+ + V+ F L N + Q RE IV +++ + L +LS
Sbjct: 577 SEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLS 636
Query: 487 DVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVY 546
D ++ D+L+SF A C YVRP T +L + Q HPI+E + N+ Y
Sbjct: 637 DTVSMLDMLLSF--AHACTLSDYVRPEF----TDTLAIKQGWHPILEKISAEKPVANNTY 690
Query: 547 FKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAAD 606
G + ++TGPNM GKST+++ I + +AQIG FVP A+ + QIFTR+ D
Sbjct: 691 ITEGS-NVLIITGPNMSGKSTFLKQIALCQIMAQIGSFVPAQYASFRIAAQIFTRISTDD 749
Query: 607 SQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQP 666
STFM EMKE A ++ + SL++IDELGRGT+T +G G++ ++ L S +
Sbjct: 750 DIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGTGISYAVCEHLLSTKA- 808
Query: 667 FTLFATHFHEIALLSRVIPTFRNV--QVSALEQ----EDNLVLLYQVKPGSCV-KSYGVH 719
FTLF THF E+ + + N+ +V ++ +D ++ Y++ G K YG+
Sbjct: 809 FTLFTTHFLELCHIDTLYLNVENMHFEVQHVKNTSRNKDAILYTYKLSRGLTEEKHYGLK 868
Query: 720 CAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETNNREEEYF---KTVQEGEYQMF-- 774
A+ + P ++ AR++ + + S E + + Y + VQ
Sbjct: 869 AAEASSLPPSIVLDAREITTQITRQISQNRRSSPEMDRQRAVYHLATRLVQVARNSQLEP 928
Query: 775 DFLQQCLSLSKQK---DTNRILHLQETQE 800
D L+ LS K+K D R L E E
Sbjct: 929 DRLRTYLSNLKKKYEGDFPRAADLPEKTE 957
Score = 124 (48.7 bits), Expect = 1.7e-43, Sum P(2) = 1.7e-43
Identities = 68/314 (21%), Positives = 131/314 (41%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLP-AEYLNDNKNKIVTILDR 147
+G+A +DL + + + + D+ Y+ + + SP E ++ + N K+ T++
Sbjct: 193 IGMASIDLKSPQIMLSQFADNTTYAKVITKLQVLSPLEIIMSNTACVVGNSTKLFTLITE 252
Query: 148 N--KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYL 205
N V T ++ F+E ++ + +L + S + CL A +L+ Y+
Sbjct: 253 NFKNVNFTTVQRKYFNETKGLEYIEQLCIAEFSSVLMEVQSRYYCLAAAA----ALLKYV 308
Query: 206 ELMNNEDNM-NQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRT 264
E + N I+ + + S+ +L +L + ++ +L G+L+ +T
Sbjct: 309 EFIQNSVYAPKSLKIYFQGSEQTAMIDSSSAQNLELLVN--NQDYRSNHTLFGVLNYTKT 366
Query: 265 PQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIG 324
G R L + +PL D++ I R V L+ + E L R L Q L++ +
Sbjct: 367 AGGSRRLRSNILEPLVDVETISMRLDCVQELLQDEELFYGLQSVISRFLDTEQLLSVLVQ 426
Query: 325 RKKAGLKDCYRVYEG-VSQLPKLISILESLVQ--NVEASNLNTILSSLQSLKMMDRK-DA 380
K +D E ++ L L LE LV V N +T L + D +
Sbjct: 427 IPK---QDTVNAAESKITNLIYLKHTLE-LVDPLKVALKNCSTPLLRAYYGSLEDHRFGL 482
Query: 381 VMDKMKEYLESTAR 394
+++K+K + AR
Sbjct: 483 ILEKIKTVINDDAR 496
>UNIPROTKB|A4R0R0 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0005634
GO:GO:0006298 EMBL:CM001231 GO:GO:0030983 eggNOG:COG0249
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08736
OrthoDB:EOG42NN7M RefSeq:XP_003709956.1 STRING:A4R0R0
EnsemblFungi:MGG_09306T0 GeneID:2680221 KEGG:mgr:MGG_09306
Uniprot:A4R0R0
Length = 1151
Score = 382 (139.5 bits), Expect = 3.1e-43, Sum P(3) = 3.1e-43
Identities = 87/224 (38%), Positives = 129/224 (57%)
Query: 480 QTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMG-TGSLVLNQCRHPIVELQGGV 538
Q L LA D L+SF A A Y +P + P ++ + RHPI E
Sbjct: 835 QPLRDAVSSLATLDCLLSF--AQVAALPGYSKPIILPDSHPPTIAVAGGRHPIAEHTLPS 892
Query: 539 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQI 598
YIP S +LVTGPNMGGKS+++R++ + V LAQ+G FVP DS +++ D I
Sbjct: 893 GYIPFSTTLSSPAPLAHLVTGPNMGGKSSFVRALALLVLLAQVGSFVPADSLRLTLSDAI 952
Query: 599 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAR 658
+TR+GA+D+ + G STFM+E+ ETA +++ T SLV++DELGRGTST DG +A ++
Sbjct: 953 YTRMGASDNLFAGESTFMVEVGETAAILRTATPRSLVLLDELGRGTSTHDGAAIAHAVLD 1012
Query: 659 ELASHRQPFTLFATHFHEIALLSRVIPT--FRNVQVSALEQEDN 700
+ + + TLF TH+ +A ++ + T RNV + D+
Sbjct: 1013 HVVRNTRCLTLFITHYQSLARVAEGLGTGLVRNVHMRFTSSRDD 1056
Score = 130 (50.8 bits), Expect = 3.1e-43, Sum P(3) = 3.1e-43
Identities = 57/219 (26%), Positives = 98/219 (44%)
Query: 195 THCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHM--SSAVMSSLHVLPQQGSTSAQTY 252
T CL ++I +L E ++ + + +S HM + + SL V + ST
Sbjct: 508 TLCLSAMITHLTEFGLE-HIFDLTKYFQSFSTRSHMCINGTTLESLEVY--RNSTDHTEK 564
Query: 253 DSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRG 312
SLL LD+ RT G R+L +W+ +PL D + + +R AAV L N R
Sbjct: 565 GSLLWALDKTRTRFGQRMLRKWLGRPLLDKERLDDRVAAVEELFEN------------RN 612
Query: 313 LPDMQSLAMRIGRKKAGL-KDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQS 371
P ++ L + K L + R++ G P+L+++L++L Q + + S
Sbjct: 613 GPQVEKLQKLLSSIKTDLERSLIRIFYGRCTRPELLAVLQTL-QRIAVEYIVVKEPSQTG 671
Query: 372 LK--MMDRKDAVMDKMKEYLESTARRLNL-VADKTIKLE 407
K ++ A + +++E + S R+N A K K E
Sbjct: 672 FKSNLVSEALASLPRIREIVVSYLNRINPDAARKNDKYE 710
Score = 78 (32.5 bits), Expect = 3.1e-43, Sum P(3) = 3.1e-43
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 699 DNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTK 748
+N+ LY+V G +SYG++ A++A P +LE A ++ E + T+
Sbjct: 1070 ENITFLYEVADGVAHRSYGLNVARLARIPRKILEVAARKSRKMEEDVRTR 1119
>TAIR|locus:2132233 [details] [associations]
symbol:MSH6 "AT4G02070" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006290 "pyrimidine dimer repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 InterPro:IPR002999
GO:GO:0005524 GO:GO:0009411 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003684 EMBL:AL161493 SMART:SM00333 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
GO:GO:0006290 EMBL:AF001308 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
EMBL:AF001535 EMBL:AJ245967 IPI:IPI00528681 PIR:T01508
RefSeq:NP_192116.1 UniGene:At.34340 ProteinModelPortal:O04716
SMR:O04716 STRING:O04716 PaxDb:O04716 PRIDE:O04716
EnsemblPlants:AT4G02070.1 GeneID:828147 KEGG:ath:AT4G02070
TAIR:At4g02070 HOGENOM:HOG000243127 InParanoid:O04716 KO:K08737
OMA:YHMDAVI PhylomeDB:O04716 ProtClustDB:CLSN2685718
ArrayExpress:O04716 Genevestigator:O04716 GermOnline:AT4G02070
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 Uniprot:O04716
Length = 1324
Score = 463 (168.0 bits), Expect = 4.4e-43, Sum P(3) = 4.4e-43
Identities = 141/500 (28%), Positives = 238/500 (47%)
Query: 263 RTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEY--ALRGLPDMQSL- 319
R P RL+A+ ++A R+ +L +T A+ + E+ LRG M
Sbjct: 778 RLPDMERLIARMFSS----IEAS-GRNGDKVVLYEDT-AKKQVQEFISTLRGCETMAEAC 831
Query: 320 -AMRIGRKKAGLKDCYRVYEGVSQLPKL---ISILESLVQNVEASNLNTILSSLQSLKMM 375
++R K + + LP + I + VEA N ++ + +
Sbjct: 832 SSLRAILKHDTSRRLLHLLTPGQSLPNISSSIKYFKDAFDWVEAHNSGRVIPHEGADEEY 891
Query: 376 DRKDAVMDKMKEYLESTAR-RLNLVADKTIKLEN-SPQGFAYRITMKLNNSIDDRYTILD 433
D +++ + L+ + + L+ D +I + + L+ S+ Y +
Sbjct: 892 DCACKTVEEFESSLKKHLKEQRKLLGDASINYVTVGKDEYLLEVPESLSGSVPHDYELCS 951
Query: 434 TVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFD 493
+ +G R+ + + + E E+ +SI + +IG + + QL A+ D
Sbjct: 952 SKKGVSRYWTPTIKKLLKELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATAELD 1011
Query: 494 VLVSFSIASTCAPKPYVRPCMKPM---GTGSLVLNQCRHPIV--ELQGGVSYIPNDVYFK 548
VL+S + AS RP + G L HP++ + G S++PN+V
Sbjct: 1012 VLISLAFASDSYEGVRCRPVISGSTSDGVPHLSATGLGHPVLRGDSLGRGSFVPNNVKIG 1071
Query: 549 SGE-VSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADS 607
E SF L+TGPNMGGKST +R + ++V LAQIG VP ++ +S VD+I R+GA D
Sbjct: 1072 GAEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDKICVRMGAKDH 1131
Query: 608 QYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPF 667
G STF+ E+ ETA ++ T NSLV++DELGRGT+T DG +A S+ Q
Sbjct: 1132 IMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCR 1191
Query: 668 TLFATHFHEIALLSRVIPTFRNVQVSALEQE-----DNLVLLYQVKPGSCVKSYGVHCAK 722
F+TH+H +++ + P ++ E + + LY++ PG+C KSYGV+ A+
Sbjct: 1192 GFFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIGGVEEVTFLYRLTPGACPKSYGVNVAR 1251
Query: 723 MAGYPEDMLEQARDLMKEYE 742
+AG P+ +L++A +E+E
Sbjct: 1252 LAGLPDYVLQRAVIKSQEFE 1271
Score = 118 (46.6 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 44/162 (27%), Positives = 79/162 (48%)
Query: 221 SIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLK 280
+++ +++ + +A + +L + + S + +L L++C T G RLL W+ +PL
Sbjct: 689 NVNEKQHMVLDAAALENLEIF--ENSRNGGYSGTLYAQLNQCITASGKRLLKTWLARPLY 746
Query: 281 DLDAIVERHAAVNILVN-NTEARMNLHEYALRGLPDMQSLAMRI--GRKKAGLK-DCYRV 336
+ + I ER AV IL N + + +L LPDM+ L R+ + +G D +
Sbjct: 747 NTELIKERQDAVAILRGENLPYSLEFRK-SLSRLPDMERLIARMFSSIEASGRNGDKVVL 805
Query: 337 YEGVS--QLPKLISILESLVQNVEA-SNLNTILSSLQSLKMM 375
YE + Q+ + IS L EA S+L IL S +++
Sbjct: 806 YEDTAKKQVQEFISTLRGCETMAEACSSLRAILKHDTSRRLL 847
Score = 84 (34.6 bits), Expect = 4.4e-43, Sum P(3) = 4.4e-43
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 69 SHILCVISEDKTLET-VLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKEC 127
S+++ + ++L + GV +VD+ T+K +G+ DD S L ++ + P E
Sbjct: 505 SYLMALTEGGESLTNPTAEHNFGVCLVDVATQKIILGQFKDDQDCSALSCLLSEMRPVEI 564
Query: 128 LLPAEYLNDNKNKIVTILDRN 148
+ PA+ L+ + + RN
Sbjct: 565 IKPAKVLSYATERTIVRQTRN 585
Score = 37 (18.1 bits), Expect = 4.4e-43, Sum P(3) = 4.4e-43
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 8 FPQKSKTTIRFFNRVEFYCVHGEDAELIQRKSNVVYL 44
F K + FF +FY + DA + ++ ++ Y+
Sbjct: 389 FKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQYM 425
>UNIPROTKB|Q23AD6 [details] [associations]
symbol:TTHERM_00426230 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009411 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:GG662724 RefSeq:XP_001013801.1
UniGene:Tth.12031 ProteinModelPortal:Q23AD6
EnsemblProtists:EAR93556 GeneID:7834338 KEGG:tet:TTHERM_00426230
ProtClustDB:CLSZ2445539 Uniprot:Q23AD6
Length = 1139
Score = 285 (105.4 bits), Expect = 3.7e-41, Sum P(4) = 3.7e-41
Identities = 66/170 (38%), Positives = 94/170 (55%)
Query: 582 GCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELG 641
GC+VP + S+VD+IFTR+GA D G STF +EM+E I T NS+ I DELG
Sbjct: 944 GCYVPAEQCEFSLVDRIFTRIGAGDKLIEGKSTFYIEMEEVKNSIMYGTYNSIAIFDELG 1003
Query: 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQE-DN 700
RGTSTFDG +A I + Q +FATHF LL + ++ + +E DN
Sbjct: 1004 RGTSTFDGVAIAFGILKYFIEKIQSRCIFATHFF---LLINELRFYKEISFYHMEYYYDN 1060
Query: 701 ----LVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLD 746
L+ Y++K G+ S+G+ AK+ G + +L A+ E+E SL+
Sbjct: 1061 KSKKLIFKYKLKQGNAESSFGIDLAKIVGIEQSVLNLAQKKQLEFENSLE 1110
Score = 147 (56.8 bits), Expect = 3.7e-41, Sum P(4) = 3.7e-41
Identities = 63/260 (24%), Positives = 116/260 (44%)
Query: 134 LNDNKNKIVTILDRNKV-CMTGRKKNEFSEEDLMQDV--NRLVRFDDSELKNARLLPEMC 190
+ DNK++ T L + G + ++ +E ++D+ N +R LK A L
Sbjct: 416 MRDNKDQWSTQLATFYIEKQFGSEVQKYPQE--LRDIRTNDEIRGQVINLKYAALAGFFS 473
Query: 191 LTTATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQ 250
+T L S++N E + + + QFS I S+ + +S L Q
Sbjct: 474 YMDSTLQLESILNSSEYVECDFDNKQFSQRMILDSQALQHLEIFENSQTALTTTFQQVDQ 533
Query: 251 TYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYAL 310
+LL LD +TP G R+L +W+ PL D+ AI +R+ A+ + NN A + +Y +
Sbjct: 534 KKGTLLNYLDYTKTPYGKRMLKKWVCSPLIDISAINDRYDAIEDIQNNL-AMKDKFQYGI 592
Query: 311 RGLPDMQSLAMRIGRKKAGLKDCYR--VYEGVS--QLPKLISILESLVQNVEASNLNTIL 366
D++ L I R K + +YE +S +L + +++ S+ + +E T +
Sbjct: 593 ARYADIERLCSSIYRYSVKQKHAEKAVMYENISSARLKEFKNLINSM-KEIEKLIEETFM 651
Query: 367 SSLQSLKMMDRKDAVMDKMK 386
+ ++ K K ++K
Sbjct: 652 VNQENFKSQRLKRLCTYRLK 671
Score = 133 (51.9 bits), Expect = 3.7e-41, Sum P(4) = 3.7e-41
Identities = 56/222 (25%), Positives = 102/222 (45%)
Query: 379 DAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNN---SIDDRYTILDTV 435
D++ ++K Y + + L + +K + + +A+ LNN I T+ D +
Sbjct: 721 DSIRLQIKAYQDELDQYLEQLK---VKFKTNDISYAF-----LNNRQYDIQVNKTLFDKI 772
Query: 436 RGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIG----ISAGYTQTLNQLSDVLAQ 491
+ F L + + +Q + + + + +EE+ I + + T+ D++A+
Sbjct: 773 QKPADFS---LQSHSGSFQRFTSRFTSEKVAFIEELEEQLKEILSNFCVTV--FRDIVAE 827
Query: 492 FDVLVSFSIAS-TCAPKPYVRPCMKPMGTGS---LVLNQCRHPIVELQGGVSYIPNDVYF 547
D L+S S A T A RP +K L Q R+P + +Q + +PND+
Sbjct: 828 LDCLISISHACFTMADGVMCRPVIKFAKNQKETFFYLKQGRNPNL-IQLDLKQVPNDIIL 886
Query: 548 -----KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCF 584
+ + + ++TGPNMGGKST +R +S LAQIG +
Sbjct: 887 GNIAGMNAQPNIMILTGPNMGGKSTTLRLFCLSAILAQIGIY 928
Score = 56 (24.8 bits), Expect = 3.7e-41, Sum P(4) = 3.7e-41
Identities = 37/152 (24%), Positives = 60/152 (39%)
Query: 2 KFYLFFFPQKSKTT----IRFFNRVEFYCVHGEDAELIQRKSNVV---YLVKTMGQKDKT 54
KFY F+ T I F N+ E +C E A L + S +V Y V + Q K
Sbjct: 250 KFYELFYEDAIIATRLLDITFTNK-ELHCGFPEKA-LEKFASKLVQFGYKVVVVEQTSKK 307
Query: 55 LETVLVNKSNLSCFSH--ILCVISED----KTLETVLTNT---VGVAIVDLDTKKFYMGE 105
T +V++ + I E K L + T G+ + + T K +G
Sbjct: 308 TTTGIVDRDITQIITKGTINFTFEEQNHDPKYLLVIRQKTNQEFGIIVYESFTSKIQVGL 367
Query: 106 IPDDDYYSNLEAIIVQKSPKECLL-PAEYLND 136
+ DD + L++ + P+E + P +D
Sbjct: 368 LQDDKTQTRLKSFLCVTKPQEIVYDPGNITSD 399
Score = 40 (19.1 bits), Expect = 7.0e-21, Sum P(3) = 7.0e-21
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 423 NSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQR 458
++I+DRY ++ ++ + +D + +Y I+R
Sbjct: 566 SAINDRYDAIEDIQNNLAMKD-KFQYGIARYADIER 600
>FB|FBgn0036486 [details] [associations]
symbol:Msh6 "Msh6" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006301 "postreplication
repair" evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 EMBL:AE014296 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:BT050543 RefSeq:NP_648755.1 UniGene:Dm.966
ProteinModelPortal:Q9VUM0 SMR:Q9VUM0 DIP:DIP-23712N
MINT:MINT-323400 STRING:Q9VUM0 PaxDb:Q9VUM0
EnsemblMetazoa:FBtr0075646 GeneID:39654 KEGG:dme:Dmel_CG7003
UCSC:CG7003-RA CTD:2956 FlyBase:FBgn0036486
GeneTree:ENSGT00550000075024 InParanoid:Q9VUM0 OrthoDB:EOG4PNVXR
PhylomeDB:Q9VUM0 GenomeRNAi:39654 NextBio:814711 Bgee:Q9VUM0
GermOnline:CG7003 Uniprot:Q9VUM0
Length = 1190
Score = 420 (152.9 bits), Expect = 4.1e-41, Sum P(3) = 4.1e-41
Identities = 126/392 (32%), Positives = 198/392 (50%)
Query: 375 MDRKDAVMDKMKEYLESTAR----RLNLV-ADKTIKLENSPQGFAYRITMKLNNSIDDRY 429
MD V ++K YL R R+ +DK + P+ A K N S Y
Sbjct: 776 MDSIGEVEKRLKTYLVEQERHFGCRITYFGSDKKRYQLDVPESHA----SKANKS----Y 827
Query: 430 TILDTVRGGVRFQDDRLATANTQ--YQAIQREYETHQ---QSIVEEVIGISAGYTQTLNQ 484
T+ +G + R TA T+ + +Q +T + + + + + Q
Sbjct: 828 TLEGQTKG--KKPSRRYTTAETRALLKDMQHAEDTRNMVLKDLARRLFEKFSNHYDQWKQ 885
Query: 485 LSDVLAQFDVLVSFSIAS-----TCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVS 539
D +A DVL S + + C P+ V +P + L + HP +
Sbjct: 886 CIDCVANLDVLGSLAEYAGQQMVICVPE-LVSDADQPF----IQLEEGYHPCANAS---T 937
Query: 540 YIPNDVYF-KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQI 598
YIPN + + E +L+TGPNMGGKST +R +G+ V +AQIG +P S +S+VD+I
Sbjct: 938 YIPNGLELGTASEAPLSLLTGPNMGGKSTLMREVGLLVIMAQIGAHIPAASCRLSLVDRI 997
Query: 599 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAR 658
FTR+GA D G STF++E+ ET+ ++K T +SLV++DELGRGT+T+DG +A S+
Sbjct: 998 FTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVLLDELGRGTATYDGTAIAASVVN 1057
Query: 659 ELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSAL-EQEDN-------LVLLYQVKPG 710
LA+ + TLF+TH+H + ++ + E EDN + LY+ G
Sbjct: 1058 FLANLKCR-TLFSTHYHNLIDFFHNDKRITLGHMACMVENEDNADPTQETVTFLYKYTAG 1116
Query: 711 SCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
+C KSYG + AK+AG P+ ++++A +L K+ E
Sbjct: 1117 ACPKSYGFNAAKLAGMPQGIIKRAYELSKKVE 1148
Score = 84 (34.6 bits), Expect = 4.1e-41, Sum P(3) = 4.1e-41
Identities = 22/64 (34%), Positives = 29/64 (45%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGL 313
SLL LD C T G RLL W+ P D+ I ER A+ L+ + L +
Sbjct: 597 SLLSTLDHCCTKFGKRLLHHWLCAPSCDVSVIKERQDAIGELIRMPTELQEVRAL-LAPM 655
Query: 314 PDMQ 317
PD +
Sbjct: 656 PDFE 659
Score = 63 (27.2 bits), Expect = 4.1e-41, Sum P(3) = 4.1e-41
Identities = 24/101 (23%), Positives = 44/101 (43%)
Query: 69 SHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECL 128
+++L ++ +D+ + GV +D F++GE DD S L ++ P L
Sbjct: 391 NYMLAIVEKDEGT----CSRYGVCFIDTSIGDFHLGEFEDDKNCSRLLTLVSHHMPVLFL 446
Query: 129 LPAEYLNDNKNKIV-TILDRN-KVCMTGRKKNEFSEEDLMQ 167
L+ +IV T+L K + G K+ S E ++
Sbjct: 447 NEKSALSQRTQQIVRTVLGGILKEPVPGNGKHACSAEKTLK 487
Score = 38 (18.4 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 350 LESLVQNVEASNLNTILSSLQSLKMMD 376
LES +Q E + L +LQS D
Sbjct: 175 LESTIQLAEGATFQEKLKNLQSNAKQD 201
>UNIPROTKB|Q7SD11 [details] [associations]
symbol:msh-3 "DNA mismatch repair protein msh-3"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0008094
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 GO:GO:0000735 HOGENOM:HOG000029776 KO:K08736
OMA:KRTKSIY OrthoDB:EOG42NN7M EMBL:AABX02000089 RefSeq:XP_963874.1
ProteinModelPortal:Q7SD11 STRING:Q7SD11
EnsemblFungi:EFNCRT00000009637 GeneID:3880023 KEGG:ncr:NCU08115
Uniprot:Q7SD11
Length = 1145
Score = 320 (117.7 bits), Expect = 4.9e-41, Sum P(4) = 4.9e-41
Identities = 62/131 (47%), Positives = 92/131 (70%)
Query: 549 SGEVSF-NLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADS 607
SG+ + L+TGPNMGGKS+Y R++ + V LAQIG FVP S ++++ D IFTR+GA D+
Sbjct: 871 SGKPALAQLITGPNMGGKSSYTRAVALLVLLAQIGSFVPATSMSLTLSDAIFTRMGARDN 930
Query: 608 QYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPF 667
++G STFM+E+ ETA ++++ T SLV++DELGRGTST DG +A ++ +
Sbjct: 931 LFKGESTFMVEVSETAAILRQATPRSLVVLDELGRGTSTHDGRAIAGAVLEYVVRDVGCL 990
Query: 668 TLFATHFHEIA 678
LF TH+ ++A
Sbjct: 991 MLFVTHYQDLA 1001
Score = 143 (55.4 bits), Expect = 4.9e-41, Sum P(4) = 4.9e-41
Identities = 84/343 (24%), Positives = 148/343 (43%)
Query: 31 DAELIQRKSNV----VYLVKTMGQKDKTLETVLVNKSNLSCFSHILCVISED-KTLETVL 85
+A +++ +NV Y+ +T G+ D+ ET + S ++LC+ K + T
Sbjct: 293 NAPFVRKLTNVYTKGTYIDET-GELDQPGET-----TGASSGGYLLCLTETPAKGMGTDE 346
Query: 86 TNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTIL 145
VG+ V T E D +E ++ SP E L+ + L+ +K++ L
Sbjct: 347 KVNVGIIAVQPATGDIIYDEFEDGFMRREIETRLLHISPCEFLIVGD-LSKATDKLIQHL 405
Query: 146 DRNKVCMTGRK-------KNEFSEEDLMQDVNRLV--RFDDSELKNARLLPEMC-LTTAT 195
+ + G K K++ + +V + DS+ ++A LL ++ L A
Sbjct: 406 SGSSTNVFGDKSRVERVPKSKTMAAESYSNVTDFYAGKAKDSDERSAALLNKVLKLPEAV 465
Query: 196 H-CLRSLINYLE---LMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQT 251
CL ++I +L L + D F S +++ ++ + SL V + +T
Sbjct: 466 MICLSAMITHLTEYGLQHIFDLTKYFQ--SFSTRQHMLINGTTLESLEVY--RNATDHSE 521
Query: 252 YDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALR 311
SLL LD+ T G RLL +W+ +PL D + ER +AV L+NN +
Sbjct: 522 KGSLLWALDKTHTRFGQRLLRKWIGRPLLDQQRLEERVSAVEELLNN------------Q 569
Query: 312 GLPDMQSLAMRIGRKKAGL-KDCYRVYEGVSQLPKLISILESL 353
+ L + KA L + R+Y G P+L+S L++L
Sbjct: 570 STAKVDKLVNMLKSIKADLERSLIRIYYGKCTRPELLSTLQTL 612
Score = 86 (35.3 bits), Expect = 4.9e-41, Sum P(4) = 4.9e-41
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 696 EQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSG 752
++E+ + LY + PG +SYG++ A++A P +LE A E E + K G
Sbjct: 1057 DEEEEITFLYDLAPGVAHRSYGLNVARLARIPRKVLEVAARKSSELEKEVRAKRIKG 1113
Score = 68 (29.0 bits), Expect = 4.9e-41, Sum P(4) = 4.9e-41
Identities = 27/71 (38%), Positives = 32/71 (45%)
Query: 476 AGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKP-YVRPCMKPMGTGS-LVLNQCRHPIVE 533
AG Q L L+ D L+S S T A P Y +P P S L + + RHPI E
Sbjct: 783 AGEYQPLRDAVSSLSTLDCLLSLS---TVAALPGYTKPTFLPSSHPSFLSITEGRHPIAE 839
Query: 534 --LQGGVSYIP 542
L G YIP
Sbjct: 840 HLLPNG--YIP 848
Score = 58 (25.5 bits), Expect = 2.8e-32, Sum P(4) = 2.8e-32
Identities = 30/139 (21%), Positives = 67/139 (48%)
Query: 342 QLPKLISILESLVQNVEASNLNTILSSLQSLKM-MDRK--DAVMDKM-KEYLESTARRLN 397
+L + +S +E L+ N + ++ +++ L+S+K ++R K + L ST + L
Sbjct: 554 RLEERVSAVEELLNNQSTAKVDKLVNMLKSIKADLERSLIRIYYGKCTRPELLSTLQTLQ 613
Query: 398 LVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQ 457
++ + +++ SP + T+ L ++I +I V + + A + +Y
Sbjct: 614 KISFEYARVK-SPADTGFSSTL-LTSAIMTLPSISPMVTAHLSKINAEAARKDDKYAFFL 671
Query: 458 REYETHQQSIVEEVIGISA 476
++ET + I E +GI+A
Sbjct: 672 EQHET--EDISEHKLGIAA 688
Score = 42 (19.8 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 305 LHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEAS 360
L ++ R L D Q L R+ + L + + +++ KL+++L+S+ ++E S
Sbjct: 541 LRKWIGRPLLDQQRLEERVSAVEELLNN-----QSTAKVDKLVNMLKSIKADLERS 591
Score = 39 (18.8 bits), Expect = 8.1e-07, Sum P(3) = 8.1e-07
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 702 VLLYQVKPGSCVKSYGVHCAKMAGYPEDM 730
VL Y V+ C+ + H +AG E +
Sbjct: 979 VLEYVVRDVGCLMLFVTHYQDLAGVAEGL 1007
>TAIR|locus:2131829 [details] [associations]
symbol:MSH3 "AT4G25540" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IBA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006200 "ATP catabolic process" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030983 "mismatched
DNA binding" evidence=IDA] [GO:0007126 "meiosis" evidence=RCA]
[GO:0007129 "synapsis" evidence=RCA] [GO:0009410 "response to
xenobiotic stimulus" evidence=RCA] [GO:0048522 "positive regulation
of cellular process" evidence=RCA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003684 EMBL:AL022197 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032300 GO:GO:0000404
EMBL:AJ007791 IPI:IPI00524241 PIR:T05793 PIR:T51613
RefSeq:NP_194284.2 UniGene:At.506 ProteinModelPortal:O65607
SMR:O65607 STRING:O65607 PaxDb:O65607 PRIDE:O65607
EnsemblPlants:AT4G25540.1 GeneID:828659 KEGG:ath:AT4G25540
TAIR:At4g25540 HOGENOM:HOG000029776 InParanoid:O65607 KO:K08736
OMA:KRTKSIY PhylomeDB:O65607 ProtClustDB:CLSN2680081
Genevestigator:O65607 GermOnline:AT4G25540 Uniprot:O65607
Length = 1081
Score = 426 (155.0 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 130/440 (29%), Positives = 223/440 (50%)
Query: 340 VSQLPKLISILESLVQNVEASNLNTIL-SSLQSLKMMDRKDAVMDKMKEYLEST-ARRLN 397
V KL+S L V L+ ++ SS Q ++ + + AV+ ++E L+S+ A
Sbjct: 600 VDNAGKLLSALNKEAA-VRGDLLDILITSSDQFPELAEARQAVL-VIREKLDSSIASFRK 657
Query: 398 LVADKTIK-LENSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAI 456
+A + ++ L+ S G + I + +++ + + +++ + +R+ + A A+
Sbjct: 658 KLAIRNLEFLQVS--GITHLIELPVDSKVPMNWVKVNSTKKTIRYHPPEIV-AGLDELAL 714
Query: 457 QREYET--HQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRP-C 513
E+ ++ S + S YT LA D L S S S K YVRP
Sbjct: 715 ATEHLAIVNRASWDSFLKSFSRYYTD-FKAAVQALAALDCLHSLSTLSR--NKNYVRPEF 771
Query: 514 MKPMGTGSLVLNQCRHPIVELQGGVSYIPND-VYFKSGEVSFNLVTGPNMGGKSTYIRSI 572
+ + + RHP++E +++PND + GE ++TGPNMGGKS YIR +
Sbjct: 772 VDDCEPVEINIQSGRHPVLETILQDNFVPNDTILHAEGEYC-QIITGPNMGGKSCYIRQV 830
Query: 573 GVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTEN 632
+ +AQ+G FVP A + V+D +FTR+GA+DS G STF+ E+ E + +I+ C+
Sbjct: 831 ALISIMAQVGSFVPASFAKLHVLDGVFTRMGASDSIQHGRSTFLEELSEASHIIRTCSSR 890
Query: 633 SLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIP----TFR 688
SLVI+DELGRGTST DG +A + + L + ++ LF TH+ EIA +S P T+
Sbjct: 891 SLVILDELGRGTSTHDGVAIAYATLQHLLAEKRCLVLFVTHYPEIAEISNGFPGSVGTY- 949
Query: 689 NVQVSALEQE------DNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
+V L+++ D++ LY++ G C +S+G A++A P + +A + + E
Sbjct: 950 HVSYLTLQKDKGSYDHDDVTYLYKLVRGLCSRSFGFKVAQLAQIPPSCIRRAISMAAKLE 1009
Query: 743 YSL---DTKTPSGDETNNRE 759
+ + T G+ + E
Sbjct: 1010 AEVRARERNTRMGEPEGHEE 1029
Score = 69 (29.3 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 71 ILCVISE---DKTL----ETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKS 123
++CV+ E +TL E VGV V++ T + E D+ S LEA+I+ S
Sbjct: 237 LVCVVDERVKSETLGCGIEMSFDVRVGVVGVEISTGEVVYEEFNDNFMRSGLEAVILSLS 296
Query: 124 PKECLL 129
P E LL
Sbjct: 297 PAELLL 302
Score = 65 (27.9 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 218 SIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQ 277
S S+ + + +S+ + L V+ + S +++ SL ++ T G RLL W+
Sbjct: 410 SFRSLSSNTEMTLSANTLQQLEVV-KNNSDGSES-GSLFHNMNHTLTVYGSRLLRHWVTH 467
Query: 278 PLKDLDAIVERHAAVN 293
PL D + I R AV+
Sbjct: 468 PLCDRNLISARLDAVS 483
>DICTYBASE|DDB_G0283957 [details] [associations]
symbol:msh4 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0000228
"nuclear chromosome" evidence=ISS] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0283957 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
EMBL:AAFI02000058 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 KO:K08740 SUPFAM:SSF48334
SUPFAM:SSF53150 OMA:MSGKSVY RefSeq:XP_638826.1
ProteinModelPortal:Q54QB8 EnsemblProtists:DDB0229912 GeneID:8624350
KEGG:ddi:DDB_G0283957 InParanoid:Q54QB8 ProtClustDB:CLSZ2728957
Uniprot:Q54QB8
Length = 1041
Score = 414 (150.8 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 124/412 (30%), Positives = 195/412 (47%)
Query: 404 IKLEN-SPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQ-----DDRLATANTQYQAIQ 457
+KL++ +G+ Y + K N ++ + VR R Q + L + + + + +
Sbjct: 635 LKLQHCQTKGYYYSLPCK-NKALFHLPNVF--VRSSYRNQKYYLFSEELTSLSRRSREVF 691
Query: 458 REYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPM 517
E +E++I + L +S+ ++ D LVS ++ S +
Sbjct: 692 EEIIILSAQSIEKLIEFYRSHISELYNISESISLLDFLVSGALYSLQLDQSVCPEIFN-- 749
Query: 518 GTGSLVLNQCRHPIVELQG------GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRS 571
G G L + HP+ + ++PND SF L+ G NM GKSTYI+
Sbjct: 750 GKGPLAIKSGYHPLQLKKSKKKESFSTCFVPNDTLINE-TASFQLIHGCNMSGKSTYIQQ 808
Query: 572 IGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTE 631
+ + +A IG F+P + AT+ +VDQI +R+G +D+ STFM EMKE + +++ TE
Sbjct: 809 VALLTIVAHIGYFLPAEFATVPIVDQIISRLGTSDNIQSNASTFMTEMKEISYILENTTE 868
Query: 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFR--N 689
+SLVIIDELGRGTS DG +A SI+ L S +TLF TH+ ++ L+ P R +
Sbjct: 869 SSLVIIDELGRGTSNMDGSSIAWSISEHL-SMIGCYTLFVTHYQQLLNLATFYPNIRVYH 927
Query: 690 VQVSALEQEDNLVLLYQVKPG-SCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTK 748
QVS + L Y G S + SYGV A++AG +++ A+ + E S
Sbjct: 928 FQVSK-DDSSGLKYNYLFSEGVSSIDSYGVETAELAGIDSKVIQSAKTIRNLLE-SKSNN 985
Query: 749 TPSGDETNNREEEYFKTVQEGEYQMFDFLQQCLSLSKQKDT---NRILHLQE 797
TNN+ + YQ+ L L SK D N +L L+E
Sbjct: 986 NQINPNTNNQSINQYHHPSRDSYQLLQKLLN-LKFSKLSDVQLKNYLLKLKE 1036
Score = 100 (40.3 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 56/278 (20%), Positives = 113/278 (40%)
Query: 86 TNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTIL 145
T +G + ++++ + G+ D Y +L + +P ++P N K++
Sbjct: 258 TREIGYSSYNIESGEIETGQFCDSQTYFHLYTKLYILNPSIIVIPPIEQNREMVKLIENA 317
Query: 146 DRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYL 205
N + KK F+E D + +N+ D + + + L+ ++ +LI YL
Sbjct: 318 YPNVKIIPIIKKL-FNENDGISLMNQYCLIDKISIIE-KFTKDKVLSLSS--FNALIKYL 373
Query: 206 ELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVL--PQQGSTSAQTYDSLLGILDRCR 263
E N I + + + + +L ++ + GS + Y S+ +
Sbjct: 374 EQDGIMFVKNCIRIKYSGSENSMQIDAETIKNLELIHSSKDGSRNCTLYQSI----NNTS 429
Query: 264 TPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRI 323
T QG RLL + QP D + I R A+ L++N L L + D+ +
Sbjct: 430 TSQGSRLLISAIVQPSNDFETIKHRQNAIKQLLSNQRVVFTLTPL-LSKIQDIDKTLLLF 488
Query: 324 GR--KKAGLKD------CYRVYEGVSQL-PKLISILES 352
+ K+ +K C+ ++ + +L PK+ ++L S
Sbjct: 489 SQQNKQVTIKSIETSIKCFIDFKNIFELLPKISNLLNS 526
Score = 41 (19.5 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 163 EDLMQDVNRLVRFDDSELKNARLLPEMCLT 192
+++ D+N+L ++ + K +L + C T
Sbjct: 613 KEITDDINKLTKYYKEQFKLPQLKLQHCQT 642
>SGD|S000001162 [details] [associations]
symbol:MSH1 "DNA-binding protein involved in repair of
mitochondrial DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0043570
"maintenance of DNA repeat elements" evidence=IRD] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0043504 "mitochondrial DNA
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IDA] [GO:0000002 "mitochondrial genome maintenance"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001162 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BK006934 GO:GO:0006298 EMBL:U00059 GO:GO:0008094
GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150 EMBL:M84169
PIR:S48962 RefSeq:NP_011988.1 ProteinModelPortal:P25846 SMR:P25846
DIP:DIP-6433N IntAct:P25846 MINT:MINT-683422 STRING:P25846
PaxDb:P25846 EnsemblFungi:YHR120W GeneID:856520 KEGG:sce:YHR120W
CYGD:YHR120w OMA:KERLLNP NextBio:982278 Genevestigator:P25846
GermOnline:YHR120W GO:GO:0032300 GO:GO:0032139 Uniprot:P25846
Length = 959
Score = 401 (146.2 bits), Expect = 6.6e-40, Sum P(2) = 6.6e-40
Identities = 98/269 (36%), Positives = 157/269 (58%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
+ Q++ L D L SF++ + + V C K + L + RH +VE G+S
Sbjct: 696 VRQVATTLGYLDTLSSFAVLAN--ERNLV--CPKVDESNKLEVVNGRHLMVE--EGLSAR 749
Query: 542 PNDVYFKSG-EVSF-NL--VTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQ 597
+ + + E++ NL +TGPNMGGKST++R + V LAQIGCFVPC A + +VD+
Sbjct: 750 SLETFTANNCELAKDNLWVITGPNMGGKSTFLRQNAIIVILAQIGCFVPCSKARVGIVDK 809
Query: 598 IFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIA 657
+F+RVG+AD Y +STFM+EM ET+ +++ TE SL I+DE+GRGTS +G +A +
Sbjct: 810 LFSRVGSADDLYNEMSTFMVEMIETSFILQGATERSLAILDEIGRGTSGKEGISIAYATL 869
Query: 658 RELASHRQPFTLFATHF-HEIA-LLSRVIPTFRNVQVSALEQE------DNLVLLYQVKP 709
+ L + Q TLFATHF E+ ++ + +V + +N +++KP
Sbjct: 870 KYLLENNQCRTLFATHFGQELKQIIDNKCSKGMSEKVKFYQSGITDLGGNNFCYNHKLKP 929
Query: 710 GSCVKSYGVHCAKMAGYPEDMLEQARDLM 738
G C KS + A++AG+P + L++AR+++
Sbjct: 930 GICTKSDAIRVAELAGFPMEALKEAREIL 958
Score = 107 (42.7 bits), Expect = 6.6e-40, Sum P(2) = 6.6e-40
Identities = 83/368 (22%), Positives = 147/368 (39%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLN---DNKNKIVTIL 145
VG+ D+ T + ++ ++ Y +L + I + PKE LL L ++ ++
Sbjct: 225 VGICWCDVSTGEIFVQQV----YLRDLVSAITRIQPKEILLDERLLEFHIESGTWYPELV 280
Query: 146 DRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYL 205
+ K + +K S+ ++ L E +L + T L +L N L
Sbjct: 281 ELKKFFIKYQKMP--SQHRTIESFYGLFNLGGKEATERQLKIQFQTFTQKE-LAALRNTL 337
Query: 206 ELMNNEDNMNQFSIH-SIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYD--SLLGILDRC 262
++N ++ FSI+ I + + S + ST SLL + R
Sbjct: 338 IYVSN--HLPDFSINFQIPQRQLATAIMQIDSRTSTALELHSTVRDNNKKGSLLSSIRRT 395
Query: 263 RTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMR 322
TP G RLL+QW+ P DL I +R V +N + L L+ + D+ + +
Sbjct: 396 VTPSGTRLLSQWLSGPSLDLKEIKKRQKIVAFFKDNRDITETLRTM-LKKVNDLSRILQK 454
Query: 323 I--GRKKA-GLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQS-------- 371
GR +A L R E ++ K + SL++ S + + SL
Sbjct: 455 FSFGRGEALELIQMARSLEVSREIRKYLLNNTSLMKATLKSQITQLTESLNFEKNLIDDI 514
Query: 372 LKMMDRKDAVMDKMKEYLESTARRLNL-VADKTIKLENSPQGFAYRITMKLNNSIDDRYT 430
LK ++ ++ + + R L++ V DK K N + F R + +N S + +
Sbjct: 515 LKFLNEEELAKSQDAKQNADVTRMLDIDVKDK--KESNKDEIFELRDFI-VNPSFNTKLR 571
Query: 431 IL-DTVRG 437
L DT +G
Sbjct: 572 KLHDTYQG 579
>UNIPROTKB|F1RF09 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:CU927965
EMBL:CU928503 Ensembl:ENSSSCT00000015430 Uniprot:F1RF09
Length = 1126
Score = 343 (125.8 bits), Expect = 7.7e-40, Sum P(3) = 7.7e-40
Identities = 120/445 (26%), Positives = 204/445 (45%)
Query: 330 LKDCY-RVYEGVSQLPKLISIL-ESLVQNVEASNLNTILSSLQSLKMM-DRKDAVMDKMK 386
L+ C + E +S + + IL E +N + + L LS +K D V +K++
Sbjct: 656 LQTCLLEIPELLSPVEHYLKILNEQAAKNGDKTELFKDLSDFPVIKKRKDEIQEVTNKIQ 715
Query: 387 EYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRL 446
+L+ + L + + + + S Q F + + I + + + + RF +
Sbjct: 716 THLQEIRKILKNPSAQYVTV--SGQEFMIEVKNSAVSCIPTDWVKVGSTKAVSRFHSPFI 773
Query: 447 ATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDV---LAQFDVLVSFSIAST 503
Y+ + + E E + +++ + L LA D + FS+A
Sbjct: 774 VE---NYRHLNQLREQLVLDCSAEWLDFLENFSEHYHSLCKAVHHLATADCI--FSLAKV 828
Query: 504 CAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVS--YIPNDVYFKS-GEVSFNLVTGP 560
Y RP ++ +V+ RHP++++ G Y+PN E+S LV GP
Sbjct: 829 AKQGDYCRPTLQE--ERKIVIKNGRHPVIDVLLGEQDQYVPNSTDLSEWSELSLVLV-GP 885
Query: 561 NMGGKSTYIRSIG-VSVFLAQIGCFVP-CDSATISVVDQIFTRVGAADSQYRGISTFMME 618
+ G + + + I ++ LA + FV + + + V+D F R+GAAD+ Y+G STFM E
Sbjct: 886 SRGIRGNFFKIIRLINHILALMALFVILAEESWLFVLDFFFIRMGAADNIYKGRSTFMEE 945
Query: 619 MKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIA 678
+ +TA +I+K T SLVI+DELGRGTST DG +A + + TLF TH+ +
Sbjct: 946 LTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVC 1005
Query: 679 LLSRVIPT-FRNVQVSALEQEDN--------------LVLLYQVKPGSCVKSYGVHCAKM 723
L + N + L ED + LYQ+ GS +SYG++ AK+
Sbjct: 1006 ELEKSYSQQVGNYHMGFLVNEDESKQDPGEEDKVPDFVTFLYQITRGSAARSYGLNVAKL 1065
Query: 724 AGYPEDMLEQARDLMKEYEYSLDTK 748
A P ++L++A KE E ++ K
Sbjct: 1066 ADVPGEILKKAASKSKELEGLVNRK 1090
Score = 176 (67.0 bits), Expect = 7.7e-40, Sum P(3) = 7.7e-40
Identities = 81/359 (22%), Positives = 157/359 (43%)
Query: 32 AELIQRKSNVVYLVKTM-GQKDKTLETV--LVNKSNL---SCFSHILCVISEDKTLETVL 85
+ + RK +Y T+ G+ L + VN + + S++LC+ + ++
Sbjct: 311 SSVFSRKLTALYTKSTLIGEDVNPLVKLDDAVNVDEIMTDTSTSYLLCLCENKENVKDRK 370
Query: 86 TNTVGVAIVDLD--TKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNK---NK 140
+ + IV + T + D S LE I+ P E LLP++ + ++
Sbjct: 371 KGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRILCLQPVELLLPSDLSEPTEMLIHR 430
Query: 141 IVTILDRNKVCMTGRKKNEFSE-EDLMQDVNRLVRFDDSELKNARLLPEMC-LTTATHC- 197
+ R+ R N + E Q+V D + K ++ L + L C
Sbjct: 431 ATAVSVRDDRIRVERMDNMYFEYSHAFQEVTEFYAKDIVDNKGSQSLSGIIKLEKPVICS 490
Query: 198 LRSLINYLELMNNEDNMNQ---FSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDS 254
L ++I YL+ N E +++ F S + +++ ++ + +L +L Q T +T S
Sbjct: 491 LAAIIRYLKEFNLEKVLSKPKNFKQLSGEM-EFMTINGTTLRNLEIL--QNQTDMKTKGS 547
Query: 255 LLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLP 314
L +LD +T G R L +W+ QPL L I R AV+ +V++ + E LR LP
Sbjct: 548 LFWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVVHSESSVFGQIESHLRKLP 607
Query: 315 DMQSLAMRIGRKKAGLKDCYRVYEGVSQLP-KLISILESLVQNVEASNLNTILSSLQSL 372
D++ I KK ++ + + + + L + +++ ++ +V+++ L T L + L
Sbjct: 608 DIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQALIPAVNSHVQSNLLQTCLLEIPEL 666
Score = 41 (19.5 bits), Expect = 7.7e-40, Sum P(3) = 7.7e-40
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 25 YCVHGEDAELIQRKSNV 41
Y GEDAE+ R+ N+
Sbjct: 244 YRFFGEDAEIAARELNI 260
>UNIPROTKB|E1BK76 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:DAAA02008282 EMBL:DAAA02008283 EMBL:DAAA02008284
IPI:IPI00710010 Ensembl:ENSBTAT00000024552 Uniprot:E1BK76
Length = 855
Score = 444 (161.4 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 186/772 (24%), Positives = 345/772 (44%)
Query: 53 KTLETVLVNKSNLSCFSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYY 112
K+ + VL ++ + ++ ++ + LE +++NT +V TK F + I ++ +
Sbjct: 98 KSPQIVLSQFADNTTYAKVITKLKILSPLEIIMSNTA--CVVGNSTKLFTL--ITEN--F 151
Query: 113 SNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRL 172
N+ +Q+ EY+ + I + N V M + K + + + +
Sbjct: 152 KNVNFTTIQRKYFNETKGLEYIEQ-----LCIAEFNTVLMEVQSK--YYCLAAVAALLKY 204
Query: 173 VRFDDSELKNARLLPEMCLT----TATHCLRSLINYLELMNNEDNMNQFSIHSI-DYSKY 227
V F + + + L ++C TA S N L+NN+D+ N ++ + +Y+K
Sbjct: 205 VEFIQNSVYAPKSL-KICFQGSEQTAMIDSSSAQNLELLINNQDSRNNHTLFGVLNYTKT 263
Query: 228 VHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVE 287
S + S++ + +T + L + Q L + LD E
Sbjct: 264 PGGSRRLRSNI----LEPLVDVETINMRLDCVQELL--QDEELFFGLQSVIARFLDT--E 315
Query: 288 RHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDC----YRVYEGVSQL 343
+ +V + + + +N+ E + L ++ + K LK+C R Y G +
Sbjct: 316 QLLSVLVQIPKQDT-VNVAESKITNLICLKHTLELVDPLKITLKNCNTPLLRAYYGSLED 374
Query: 344 PKLISILESL--VQNVEASNLNTILS--SLQSLKMMDRKDAVMDKMK----EYLESTARR 395
+ IL+ + V N +A + L+ + + + + +D + E ++ A
Sbjct: 375 KRFGIILDKIKTVINDDARYMKGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGM 434
Query: 396 LNLVADK-TIKLE---NSPQGFAYRITMKL----NNSIDDRYTILDTVRGGVRFQDDRLA 447
+ +A+K ++ L +S +GF ++T N+ + + + V+ F L
Sbjct: 435 ITQLAEKYSLPLRTSFSSARGFFIQMTTDCTVLPNDQLPSEFIKISKVKNSYSFTSADLI 494
Query: 448 TANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPK 507
N + Q RE IV +++ + L +LSD ++ D+L+SF A C
Sbjct: 495 KMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSF--AHACTLS 552
Query: 508 PYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKST 567
YVRP T +L + Q HPI+E + N+ Y G +F ++TGPNM GKST
Sbjct: 553 DYVRPEF----TDTLAIKQGWHPILERISVEKPVANNTYITEGS-NFFIITGPNMSGKST 607
Query: 568 YIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK 627
Y++ I + +AQIG +VP + ++ + +QIFTR+ D STFM EMKE A ++
Sbjct: 608 YLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEVAYILH 667
Query: 628 KCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTF 687
+ SL++IDELGRGT+T +G G+ ++ L S + FTLFATHF E+ + + P
Sbjct: 668 NANDKSLILIDELGRGTNTEEGIGICYAVCEHLLSLKA-FTLFATHFLELCQIDVLYPNV 726
Query: 688 RNV--QVSALEQ----EDNLVLLYQVKPGSCV-KSYGVHCAKMAGYPEDMLEQARDLMKE 740
N+ +V ++ ++ ++ Y++ G K+YG+ A+++ P ++ A+D+ +
Sbjct: 727 ENMHFEVQHVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKDITTQ 786
Query: 741 YEYSLDTKTPSGDETNNREEEYF---KTVQEGEYQMFD--FLQQCLSLSKQK 787
+ S E + Y + VQ D L+ LS K+K
Sbjct: 787 ITRQILQNQRSAPEMERQRAVYHLATRLVQTARNSQLDPDSLRTYLSNLKKK 838
Score = 141 (54.7 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 72/316 (22%), Positives = 133/316 (42%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLP-AEYLNDNKNKIVTILDR 147
+G+A +DL + + + + D+ Y+ + + SP E ++ + N K+ T++
Sbjct: 90 IGMASIDLKSPQIVLSQFADNTTYAKVITKLKILSPLEIIMSNTACVVGNSTKLFTLITE 149
Query: 148 N--KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYL 205
N V T ++ F+E ++ + +L + + + CL +L+ Y+
Sbjct: 150 NFKNVNFTTIQRKYFNETKGLEYIEQLCIAEFNTVLMEVQSKYYCLAAVA----ALLKYV 205
Query: 206 ELMNNE---DNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRC 262
E + N + + + + SSA L ++ Q S + T L G+L+
Sbjct: 206 EFIQNSVYAPKSLKICFQGSEQTAMIDSSSAQNLEL-LINNQDSRNNHT---LFGVLNYT 261
Query: 263 RTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMR 322
+TP G R L + +PL D++ I R V L+ + E L R L Q L++
Sbjct: 262 KTPGGSRRLRSNILEPLVDVETINMRLDCVQELLQDEELFFGLQSVIARFLDTEQLLSVL 321
Query: 323 IGRKKAGLKDCYRVYEG-VSQLPKLISILESLVQ--NVEASNLNTILSSLQSLKMMDRK- 378
+ K +D V E ++ L L LE LV + N NT L + D++
Sbjct: 322 VQIPK---QDTVNVAESKITNLICLKHTLE-LVDPLKITLKNCNTPLLRAYYGSLEDKRF 377
Query: 379 DAVMDKMKEYLESTAR 394
++DK+K + AR
Sbjct: 378 GIILDKIKTVINDDAR 393
>CGD|CAL0005874 [details] [associations]
symbol:orf19.496 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0005874 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 HOGENOM:HOG000157750 SUPFAM:SSF53150
RefSeq:XP_717359.1 RefSeq:XP_717448.1 STRING:Q5A6Q9 GeneID:3640907
GeneID:3640972 KEGG:cal:CaO19.496 KEGG:cal:CaO19.8126
Uniprot:Q5A6Q9
Length = 923
Score = 403 (146.9 bits), Expect = 2.5e-38, Sum P(2) = 2.5e-38
Identities = 128/395 (32%), Positives = 201/395 (50%)
Query: 362 LNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKL 421
L + L L++ + K + K++ L+ +LN+ K I L IT K
Sbjct: 540 LKILHDELSELEVEEHK--LWSKLRNVLDDIDVKLNI--GKKIVLGRYNN--VILITGK- 592
Query: 422 NNSIDDRYTILDTVRGGVRFQDDR-LATANTQYQAIQREYETHQQSI--VEEVI--GISA 476
+SI LD G + ++ L +T++ IQ +++I VE I + +
Sbjct: 593 TSSISKASAKLD---GDILYEKKMSLVYRSTEWNDIQHLILDKKEAILLVERKIIEELKS 649
Query: 477 GYTQTLNQLSDVLAQFDVL-VSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQ 535
T+ + ++ D L V+ S+A + C K + T L + RH +VE
Sbjct: 650 EVTRRFPEFRELAGLADFLDVTSSLAIVAEENNWT--CPKLIKTPRLSVEGGRHVVVESS 707
Query: 536 ---GGVSYIPNDVYFKSG-EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSAT 591
G +IPND K G + + +++GPNMGGKSTY+R + V LAQIG FVP + AT
Sbjct: 708 LKDSGNMFIPNDS--KMGTDGTLWVISGPNMGGKSTYLRQNALIVILAQIGSFVPAEKAT 765
Query: 592 ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFG 651
I +VD+IFTR+GA D + +STFM+EM E + ++ T +SL I+DE+GRGTS +G
Sbjct: 766 IGLVDKIFTRIGATDDLFNDLSTFMVEMVEVSNILTNATPSSLAIVDEIGRGTSGKEGLA 825
Query: 652 MACSIARELASHRQPFTLFATHFH---EIALLSRVIP--TFRNVQVSALEQEDN---LVL 703
+A + L + TLFATHF E L++ I R + LE DN V+
Sbjct: 826 IAYATLLSLLQVNKCRTLFATHFGKELEQLLVANNIDQKNIRYFRTRVLENGDNEKGFVI 885
Query: 704 LYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLM 738
+ ++PG +S+ + A+MAG+PE+ L+ A ++
Sbjct: 886 DHTLEPGISERSHALDVARMAGFPENALKAAEKVL 920
Score = 89 (36.4 bits), Expect = 2.5e-38, Sum P(2) = 2.5e-38
Identities = 38/147 (25%), Positives = 69/147 (46%)
Query: 228 VHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVE 287
+ M S +L + + + + SL+ ++ R T G RLL +W+K P D I +
Sbjct: 322 LQMDSRTREALELTERTIAGRTSSVGSLVSVIKRTCTSSGTRLLTEWIKSPSLDTKDIEK 381
Query: 288 RHAAVNILVNNTEARMNLHEYALRGLPD-MQSLA-MRIGRKKAGLKDCYRVYEGVSQLPK 345
R + V + + N ++ ++ L+ L D +++L + +GR G VY S L
Sbjct: 382 RQSFVKMFLKNQHLKIVTRQH-LQQLGDFIRNLQKLVVGR---GDPVNQLVY-AASTLDG 436
Query: 346 LISILESLVQNVEASNLNTILSSLQSL 372
L + + LV+ E + LS L++L
Sbjct: 437 LQKLRDFLVEEYEQNPKK--LSCLKNL 461
Score = 45 (20.9 bits), Expect = 1.0e-33, Sum P(2) = 1.0e-33
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 39 SNVVYLVKTMG--QK--DKTLETVLVNKSNLSCFSHILCVISEDKTLETVLTNTVGV 91
+ +VY T+ QK D +E N LSC ++L K L + NT+ +
Sbjct: 425 NQLVYAASTLDGLQKLRDFLVEEYEQNPKKLSCLKNLLEKFDIPKHLAEKIYNTIDI 481
>UNIPROTKB|J9NUN0 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074977 EMBL:AAEX03008217 EMBL:AAEX03008216
Ensembl:ENSCAFT00000043640 Uniprot:J9NUN0
Length = 725
Score = 386 (140.9 bits), Expect = 7.6e-38, Sum P(2) = 7.6e-38
Identities = 95/287 (33%), Positives = 152/287 (52%)
Query: 458 REYET---HQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCM 514
R+ ET HQ +V+ +A +T+ L D+ ++ DVL++ +AS Y RP
Sbjct: 389 RDQETLLMHQLQC--QVLARAAVFTRVL----DLASRLDVLLA--LASAARDYGYSRPRY 440
Query: 515 KPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 574
P G + N RHP++EL +++PN ++TGPN GKS Y++ +G+
Sbjct: 441 SPQLLGVRIQNG-RHPLMELCAR-TFVPNSAECGGDRGRVKVITGPNSSGKSIYLKQVGL 498
Query: 575 SVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSL 634
F+A +G FVP + A I VD IFTR+ + +S G+STFM+++ + A + T+ SL
Sbjct: 499 ITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATKQSL 558
Query: 635 VIIDELGRGTSTFDGFGMACSIARE-LA-SHRQPFTLFATHFHEIALLSRVI--PTFRNV 690
V+IDE G+GT+T DG + ++ R LA P AT+F + L + P + +
Sbjct: 559 VLIDEFGKGTNTVDGLALLAAVLRHWLALGPTCPHIFVATNFLSLVQLQLLPQGPLVQYL 618
Query: 691 QVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDL 737
+ E D+LV YQV G S+ H A AG P+ +L + +++
Sbjct: 619 TMETCEDGDDLVFFYQVCDGLAKASHASHTAAQAGLPDQLLTRGKEV 665
Score = 97 (39.2 bits), Expect = 7.6e-38, Sum P(2) = 7.6e-38
Identities = 29/107 (27%), Positives = 48/107 (44%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVN--ILVNNTEARMNLHEYALR 311
SL GIL+RCR G +LL W +P +DL+ + R + +L N + LH L
Sbjct: 144 SLFGILNRCRCKWGEKLLRLWFTRPTQDLEELNSRLDVIQFFLLPQNLDMAQMLHRL-LG 202
Query: 312 GLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVE 358
+ ++ + R+ D +Y+ V L SL Q+++
Sbjct: 203 HIKNVPLILKRMKLSHTKTSDWQVLYKTVYSALGLRDACRSLPQSIQ 249
Score = 51 (23.0 bits), Expect = 5.1e-33, Sum P(2) = 5.1e-33
Identities = 34/139 (24%), Positives = 56/139 (40%)
Query: 201 LINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILD 260
+I + L N D M Q + + K V + M H +T S LG+ D
Sbjct: 181 VIQFFLLPQNLD-MAQMLHRLLGHIKNVPLILKRMKLSHTKTSDWQVLYKTVYSALGLRD 239
Query: 261 RCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHAAVN--ILVNNTEARMNLHEY 308
CR+ PQ +L +AQ L + +++ E A N ++ N + ++ +
Sbjct: 240 ACRSLPQSIQLFQDIAQEFSDDLHHIASLIGKVVDFEGSLAENHFTVLPNIDPDIDEKKR 299
Query: 309 ALRGLPDMQSLAMRIGRKK 327
L GLP S + RK+
Sbjct: 300 RLMGLP---SFLTEVARKE 315
>ZFIN|ZDB-GENE-060526-307 [details] [associations]
symbol:msh3 "mutS homolog 3 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-060526-307 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GeneTree:ENSGT00550000074949
EMBL:CR381619 IPI:IPI00805026 Ensembl:ENSDART00000092285
Uniprot:F1QCN5
Length = 950
Score = 332 (121.9 bits), Expect = 9.3e-38, Sum P(3) = 9.3e-38
Identities = 71/167 (42%), Positives = 102/167 (61%)
Query: 489 LAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIV-ELQGGVS-YIPNDVY 546
LA D L FS+A Y RP + + +++ +HP++ L G Y+PND +
Sbjct: 783 LATMDCL--FSLAQVAKENNYCRPEVLEEKS-QILITAGKHPVITSLMGDQDQYVPNDTH 839
Query: 547 FKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAAD 606
+ ++TGPNMGGKS+YIR + + +AQ+G FVP A++ +VD I+ R+GA+D
Sbjct: 840 LQGDGKRAMIITGPNMGGKSSYIRQVALVTIMAQLGSFVPAREASVGIVDGIYVRMGASD 899
Query: 607 SQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMA 653
+ RG STFM E+ ET+ V+ T SLVI+DELGRGTST DG +A
Sbjct: 900 NISRGRSTFMEELLETSDVLACATSRSLVILDELGRGTSTHDGIAIA 946
Score = 167 (63.8 bits), Expect = 9.3e-38, Sum P(3) = 9.3e-38
Identities = 81/351 (23%), Positives = 159/351 (45%)
Query: 69 SHILCVI-SEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKEC 127
++++CV S DK + + TVG+ +V + D+ +S LE+ I++ P E
Sbjct: 325 NYLMCVSESFDKQSKEL---TVGMVVVQPSIGDVMVDCFKDNMSHSELESRILRIQPVEI 381
Query: 128 LLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDD-------SEL 180
L+P++ L++ +++ + + V R + E E + + L D S
Sbjct: 382 LVPSD-LSETTERLLRNIALSSVQADDRIRIEKRESAMFEYPTALSIIKDFYRGGPHSAA 440
Query: 181 KN-ARLLPEMCLTTATH---CLRSLINYLELMNNEDNM---NQFSIHSIDYSKYVHMSSA 233
+N + +C+ + CL +I YL E + + F S D ++ +S+A
Sbjct: 441 RNHEKGSYSICMGLESPIICCLGPVIQYLTEFKLEKILLCSSSFKRLSSD-PDHMLLSAA 499
Query: 234 VMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVN 293
M +L +L Q T+ SLL +LD +T G RLL +W+ QPLK + I R AV
Sbjct: 500 TMKNLEILCNQ--TTGSVKGSLLWVLDHTQTLFGKRLLRKWVSQPLKSVIDIQARQEAVA 557
Query: 294 ILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLP-KLISILES 352
++++ + + + L LPD++ I K+ + Y + +S+L +L +++ +
Sbjct: 558 EILSSESSVLPSIQSLLTRLPDLERGLCSIYHKR----EFYLIISSLSRLNVELQALMPA 613
Query: 353 LVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKT 403
+ + + L T+L L + +++ + + E T + + D T
Sbjct: 614 IQSQLSSPLLKTLL--LDTPQLLSPAHNFLKVLNEKAAKTGNKTEMFVDLT 662
Score = 38 (18.4 bits), Expect = 9.3e-38, Sum P(3) = 9.3e-38
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 25 YCVHGEDAELIQRKSNV 41
Y GEDAE+ ++ N+
Sbjct: 215 YRFFGEDAEIAAKELNI 231
Score = 37 (18.1 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 451 TQYQAIQREYETHQQSIVEEVIGISAGY 478
T Y ++ +Y ++ V+ V+ + GY
Sbjct: 186 TIYTPLEEQYMEIKKQHVDTVLCVECGY 213
Score = 37 (18.1 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 12 SKTTIRFFNRVEFYCVHGEDAELIQRKSNVVY 43
S+TT R + V +D I+++ + ++
Sbjct: 388 SETTERLLRNIALSSVQADDRIRIEKRESAMF 419
>TAIR|locus:2092404 [details] [associations]
symbol:MSH5 "AT3G20475" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IMP] [GO:0051026 "chiasma assembly" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=RCA] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0007059 "chromosome
segregation" evidence=RCA] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0009691
"cytokinin biosynthetic process" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0032204 "regulation
of telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GO:GO:0003684 GO:GO:0030983 GO:GO:0008094 GO:GO:0051026
EMBL:AB024036 GO:GO:0045143 GO:GO:0043073 GO:GO:0000795
SUPFAM:SSF48334 GO:GO:0032300 GO:GO:0010777 EMBL:EF471448
EMBL:AK221687 EMBL:AK230222 EMBL:BT012280 IPI:IPI00532145
RefSeq:NP_188683.3 UniGene:At.50208 ProteinModelPortal:F4JEP5
SMR:F4JEP5 EnsemblPlants:AT3G20475.1 GeneID:821593
KEGG:ath:AT3G20475 TAIR:At3g20475 KO:K08741 OMA:NDLVFFY
Uniprot:F4JEP5
Length = 807
Score = 362 (132.5 bits), Expect = 1.0e-37, Sum P(4) = 1.0e-37
Identities = 87/316 (27%), Positives = 172/316 (54%)
Query: 464 QQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLV 523
+++I+ +++ + ++ L + + +A+ D ++S +A YVRP + L
Sbjct: 480 ERAIIRDLLSHTLLFSAHLLKAVNFVAELDCILS--LACVAHQNNYVRPVLTVESL--LD 535
Query: 524 LNQCRHPIVELQGGVSYIPNDVYFK-SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG 582
+ RH + E+ ++IPND +G + +++TGPN GKS Y++ + + VFL+ IG
Sbjct: 536 IRNGRHVLQEMAVD-TFIPNDTEINDNGRI--HIITGPNYSGKSIYVKQVALIVFLSHIG 592
Query: 583 CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGR 642
FVP D+AT+ + D+IF +G+ STFM+++ + ++++ T SL ++DE G+
Sbjct: 593 SFVPADAATVGLTDRIFCAMGSKFMTAEQ-STFMIDLHQVGMMLRQATSRSLCLLDEFGK 651
Query: 643 GTSTFDGFGMACSIARELASHRQP-FTLFATHFHEIALLSRVIPTFRNVQ---VSALEQE 698
GT T DG G+ A+ +P + TH E+ L +P ++ +S L +
Sbjct: 652 GTLTEDGIGLLGGTISHFATCAEPPRVVVCTHLTEL-LNESCLPVSEKIKFYTMSVLRPD 710
Query: 699 ------DNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSG 752
+ +V LY++ PG + SYG+HCA +AG PE+++++A ++ +E + + S
Sbjct: 711 TESANMEEIVFLYRLIPGQTLLSYGLHCALLAGVPEEVVKRAAIVLDAFESNNNVDKLSL 770
Query: 753 DETNNREEEYFKTVQE 768
D+ +++++ + V +
Sbjct: 771 DKISSQDQAFKDAVDK 786
Score = 127 (49.8 bits), Expect = 1.0e-37, Sum P(4) = 1.0e-37
Identities = 38/161 (23%), Positives = 77/161 (47%)
Query: 218 SIHSIDYSKYVHMSSAVMSSLHVL-----PQQ-GSTSAQTYDSLLGILDRCRTPQGHRLL 271
S+ + +K++ + +A +L + P G A+ S+ G++++C TP G RLL
Sbjct: 173 SVMEVPLNKFLKLDAAAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCATPMGRRLL 232
Query: 272 AQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKA--G 329
W +P+ DL+ + R A++ +++ E +L E L+ + D+ L + +
Sbjct: 233 RSWFMRPILDLEVLDRRLNAISFFISSVELMASLRE-TLKSVKDISHLLKKFNSPTSLCT 291
Query: 330 LKDCYRVYEGVSQL---PKL--ISILESLVQNVEASNLNTI 365
D + +S L K+ + + ESL +++ NL+ I
Sbjct: 292 SNDWTAFLKSISALLHVNKIFEVGVSESLREHMRRFNLDII 332
Score = 41 (19.5 bits), Expect = 1.0e-37, Sum P(4) = 1.0e-37
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 71 ILCVISEDKTLETVLTNTVGVAIVDLDT 98
+L ++ ++ +ET+ N G A + +D+
Sbjct: 146 LLAILESERIVETLEQNESGSASIAIDS 173
Score = 39 (18.8 bits), Expect = 1.0e-37, Sum P(4) = 1.0e-37
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 15 TIRFFNRVEFYCVHGEDAELI-----QRKSNVVY--------LVKTMGQKDKTLETVLVN 61
++R + +EF+ D LI Q K +++Y V + Q D T ET +V
Sbjct: 32 SVRQLHVLEFWEEDCSDFTLINMVKYQAKPSIIYASTKSEESFVAALQQNDGTDETTMVK 91
Query: 62 KSNLSCFSH 70
S FS+
Sbjct: 92 LVKSSTFSY 100
>UNIPROTKB|E1B8D2 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007292
GO:GO:0007129 GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:DAAA02055381 IPI:IPI00710632
Ensembl:ENSBTAT00000026367 Uniprot:E1B8D2
Length = 831
Score = 385 (140.6 bits), Expect = 1.0e-37, Sum P(3) = 1.0e-37
Identities = 92/266 (34%), Positives = 144/266 (54%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 516 LTRVLDLASRLDVLLA--LASAARDYGYSRPRYSPRLLGVRIQNG-RHPLMELCAR-TFV 571
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN ++TGPN GKS Y++ +G+ F+A +G FVP + A I VD IFTR
Sbjct: 572 PNSAECGGDAGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 631
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARE-L 660
+ + +S G+STFM+++ + A + TE SLV++DE G+GT+T DG + ++ R L
Sbjct: 632 IHSCESISLGLSTFMIDLNQVAKAVNNATERSLVLVDEFGKGTNTVDGLALLAAVIRHWL 691
Query: 661 A-SHRQPFTLFATHFH---EIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSY 716
A P AT+F ++ LL R P + + + E D+LV YQV G S+
Sbjct: 692 ALGPTCPHVFVATNFLSLVQLQLLPRG-PLVQYLTMETCEDGDDLVFFYQVCEGVARASH 750
Query: 717 GVHCAKMAGYPEDML---EQARDLMK 739
H A AG PE ++ +Q DL++
Sbjct: 751 ASHTAAQAGLPEKLIARGKQVSDLIR 776
Score = 97 (39.2 bits), Expect = 1.0e-37, Sum P(3) = 1.0e-37
Identities = 43/184 (23%), Positives = 78/184 (42%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVN--ILVNNTEARMNLHEYALR 311
SL GIL+RCR G +LL W +P +DL + R + +L N + LH L
Sbjct: 250 SLFGILNRCRCKWGEKLLRLWFTRPTQDLGELNSRLDVIQFFLLPQNLDMAQMLHRL-LG 308
Query: 312 GLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVE-----ASNLNTIL 366
+ ++ + R+ + D +Y+ V L SL Q+++ A + L
Sbjct: 309 HIKNVPLILKRMTLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDL 368
Query: 367 SSLQSL--KMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNS 424
+ SL K++D + ++ + L + ++ +K +L P F + K +
Sbjct: 369 HHIASLIGKVVDFEGSLAENRFTVLPNIDPEID---EKKRRLMGLPS-FLTEVARKELEN 424
Query: 425 IDDR 428
+D R
Sbjct: 425 LDSR 428
Score = 59 (25.8 bits), Expect = 9.1e-34, Sum P(3) = 9.1e-34
Identities = 45/203 (22%), Positives = 83/203 (40%)
Query: 201 LINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILD 260
+I + L N D M Q + + K V + M+ H +T S LG+ D
Sbjct: 287 VIQFFLLPQNLD-MAQMLHRLLGHIKNVPLILKRMTLSHTKVSDWQVLYKTVYSALGLRD 345
Query: 261 RCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHAAVN--ILVNNTEARMNLHEY 308
CR+ PQ +L +AQ L + +++ E A N ++ N + ++ +
Sbjct: 346 ACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKR 405
Query: 309 ALRGLPDMQSLAMR--IGRKKAGLKDCYRVYEGVSQLPKLISI--LESLVQ--NVEASNL 362
L GLP + R + + + C +Y + + L+SI L S+V+ + E L
Sbjct: 406 RLMGLPSFLTEVARKELENLDSRIPSCSVIY--IPLIGFLLSIPRLPSMVETSDFEIEGL 463
Query: 363 NTILSSLQSLKMMDRKDAVMDKM 385
+ + S + L + +D +
Sbjct: 464 DFMFLSEEKLHYRSARTKELDAL 486
Score = 46 (21.3 bits), Expect = 1.0e-37, Sum P(3) = 1.0e-37
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 84 VLTNT--VGVAIVDL-DTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNK 140
VL N+ +G+A D D+ +M + PD + L+ ++ + P+ + A+ ++N +
Sbjct: 51 VLWNSGYLGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEIDPRSVVTSAKQ-DENMTR 109
Query: 141 IV 142
+
Sbjct: 110 FL 111
>UNIPROTKB|F1PBG8 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
OMA:NDLVFFY GeneTree:ENSGT00550000074977 EMBL:AAEX03008217
EMBL:AAEX03008216 Ensembl:ENSCAFT00000000966 Uniprot:F1PBG8
Length = 857
Score = 386 (140.9 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 95/287 (33%), Positives = 152/287 (52%)
Query: 458 REYET---HQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCM 514
R+ ET HQ +V+ +A +T+ L D+ ++ DVL++ +AS Y RP
Sbjct: 521 RDQETLLMHQLQC--QVLARAAVFTRVL----DLASRLDVLLA--LASAARDYGYSRPRY 572
Query: 515 KPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 574
P G + N RHP++EL +++PN ++TGPN GKS Y++ +G+
Sbjct: 573 SPQLLGVRIQNG-RHPLMELCAR-TFVPNSAECGGDRGRVKVITGPNSSGKSIYLKQVGL 630
Query: 575 SVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSL 634
F+A +G FVP + A I VD IFTR+ + +S G+STFM+++ + A + T+ SL
Sbjct: 631 ITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATKQSL 690
Query: 635 VIIDELGRGTSTFDGFGMACSIARE-LA-SHRQPFTLFATHFHEIALLSRVI--PTFRNV 690
V+IDE G+GT+T DG + ++ R LA P AT+F + L + P + +
Sbjct: 691 VLIDEFGKGTNTVDGLALLAAVLRHWLALGPTCPHIFVATNFLSLVQLQLLPQGPLVQYL 750
Query: 691 QVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDL 737
+ E D+LV YQV G S+ H A AG P+ +L + +++
Sbjct: 751 TMETCEDGDDLVFFYQVCDGLAKASHASHTAAQAGLPDQLLTRGKEV 797
Score = 97 (39.2 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 29/107 (27%), Positives = 48/107 (44%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVN--ILVNNTEARMNLHEYALR 311
SL GIL+RCR G +LL W +P +DL+ + R + +L N + LH L
Sbjct: 276 SLFGILNRCRCKWGEKLLRLWFTRPTQDLEELNSRLDVIQFFLLPQNLDMAQMLHRL-LG 334
Query: 312 GLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVE 358
+ ++ + R+ D +Y+ V L SL Q+++
Sbjct: 335 HIKNVPLILKRMKLSHTKTSDWQVLYKTVYSALGLRDACRSLPQSIQ 381
Score = 51 (23.0 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 34/139 (24%), Positives = 56/139 (40%)
Query: 201 LINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILD 260
+I + L N D M Q + + K V + M H +T S LG+ D
Sbjct: 313 VIQFFLLPQNLD-MAQMLHRLLGHIKNVPLILKRMKLSHTKTSDWQVLYKTVYSALGLRD 371
Query: 261 RCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHAAVN--ILVNNTEARMNLHEY 308
CR+ PQ +L +AQ L + +++ E A N ++ N + ++ +
Sbjct: 372 ACRSLPQSIQLFQDIAQEFSDDLHHIASLIGKVVDFEGSLAENHFTVLPNIDPDIDEKKR 431
Query: 309 ALRGLPDMQSLAMRIGRKK 327
L GLP S + RK+
Sbjct: 432 RLMGLP---SFLTEVARKE 447
>UNIPROTKB|A2ABF0 [details] [associations]
symbol:MSH5 "cDNA FLJ39914 fis, clone SPLEN2018732, highly
similar to MutS protein homolog 5" species:9606 "Homo sapiens"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:BX248244 EMBL:CR759787 GO:GO:0006298
GO:GO:0030983 EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334
EMBL:CR759915 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AK097233
IPI:IPI00798222 SMR:A2ABF0 STRING:A2ABF0 Ensembl:ENST00000395853
Ensembl:ENST00000414412 Ensembl:ENST00000430216
Ensembl:ENST00000436004 Ensembl:ENST00000439816
Ensembl:ENST00000448169 HOGENOM:HOG000231215 Uniprot:A2ABF0
Length = 508
Score = 377 (137.8 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 87/261 (33%), Positives = 142/261 (54%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 193 LTRVLDLASRLDVLLA--LASAARDYGYSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFV 248
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN + ++TGPN GKS Y++ +G+ F+A +G FVP + A I VD IFTR
Sbjct: 249 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 308
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA 661
+ + +S G+STFM+++ + A + T SLV+IDE G+GT+T DG + ++ R
Sbjct: 309 IHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWL 368
Query: 662 SHRQ--PFTLFATHFHEIALLSRVIPTFRNVQVSALEQ-ED--NLVLLYQVKPGSCVKSY 716
+ P AT+F + L +++P VQ +E ED +LV YQV G S+
Sbjct: 369 ARGPTCPHIFVATNFLSLVQL-QLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASH 427
Query: 717 GVHCAKMAGYPEDMLEQARDL 737
H A AG P+ ++ + +++
Sbjct: 428 ASHTAAQAGLPDKLVARGKEV 448
Score = 57 (25.1 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 36/155 (23%), Positives = 69/155 (44%)
Query: 249 AQTYDSLLGILDRCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHAAVN--ILV 296
+QT S LG+ D CR+ PQ +L +AQ L + +++ E A N ++
Sbjct: 11 SQTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVL 70
Query: 297 NNTEARMNLHEYALRGLPDMQSLAMR--IGRKKAGLKDCYRVYEGVSQLPKLISI--LES 352
N + ++ + L GLP + R + + + C +Y + + L+SI L S
Sbjct: 71 PNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIY--IPLIGFLLSIPRLPS 128
Query: 353 LVQ--NVEASNLNTILSSLQSLKMMDRKDAVMDKM 385
+V+ + E + L+ + S + L + +D +
Sbjct: 129 MVEASDFEINGLDFMFLSEEKLHYRSARTKELDAL 163
>UNIPROTKB|F1N8B7 [details] [associations]
symbol:F1N8B7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0007129 "synapsis" evidence=IEA] [GO:0007292
"female gamete generation" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:AADN02049793 IPI:IPI00814446
Ensembl:ENSGALT00000004315 Uniprot:F1N8B7
Length = 791
Score = 364 (133.2 bits), Expect = 6.4e-37, Sum P(3) = 6.4e-37
Identities = 84/262 (32%), Positives = 143/262 (54%)
Query: 479 TQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGV 538
+Q LN + + A DVL++ ++ + Y RP + RHP++EL
Sbjct: 474 SQVLNNVIEYTAHLDVLLALAVMAR--ENSYCRPRFTQRH--GFHIKDGRHPLMELCAK- 528
Query: 539 SYIPNDVYFKSGEVS--FNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVD 596
+++ N V SGE + ++TGPN GKS Y++ +G+ +F+A IG +VP A I +D
Sbjct: 529 TFVANPV--NSGEATRRIKIITGPNSSGKSIYLKQVGLIIFMALIGSYVPAAEAEIGAID 586
Query: 597 QIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSI 656
I+TR+ +S G+STFM+++ + A + TE SLV+IDE G+GT+T DG + ++
Sbjct: 587 GIYTRIHTRESVSVGLSTFMIDLNQVAKAVNNATERSLVLIDEFGKGTNTLDGLALLAAV 646
Query: 657 ARELASH--RQPFTLFATHFHEIALLSRVIPTFRNVQVSALE--QE-DNLVLLYQVKPGS 711
+ + + P +T+FH + L ++P ++ A+E Q+ D LV YQ+K G
Sbjct: 647 LKYWINQGTQCPQVFVSTNFHSLMQLE-LLPDTPLLEYLAMETHQDGDELVFFYQIKQGV 705
Query: 712 CVKSYGVHCAKMAGYPEDMLEQ 733
S+ + A +AG P ++E+
Sbjct: 706 STVSHAANIAALAGMPAKIIER 727
Score = 110 (43.8 bits), Expect = 6.4e-37, Sum P(3) = 6.4e-37
Identities = 35/140 (25%), Positives = 64/140 (45%)
Query: 221 SIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLK 280
+ID Y + S +H + S+ + SL GIL+RCR G +LL W+ +P +
Sbjct: 179 NIDQDTYCVLQ-IFKSDIHPSVYKLSSGLKEGFSLYGILNRCRCKWGEKLLRLWLTRPTR 237
Query: 281 DLDAIVERHAAVN--ILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYE 338
+L + +R ++ +L N E + L + LR + ++ + R+ + D +Y+
Sbjct: 238 NLTELNKRLDVIHFFLLAQNHETVLTLQD-CLRNIKNVPLILKRMTLSHTKVSDWQALYK 296
Query: 339 GVSQLPKLISILESLVQNVE 358
V L SL ++E
Sbjct: 297 TVCSALCLRDTCRSLPHSIE 316
Score = 47 (21.6 bits), Expect = 6.4e-37, Sum P(3) = 6.4e-37
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 97 DTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTIL---DRNK 149
D ++M + PD + L+ + + PK C++ + + N +T L D NK
Sbjct: 29 DCSVYFMPDTPDSEGLELLQKVTGEVHPK-CIVTSAKQDQNIANFLTSLADSDSNK 83
>UNIPROTKB|Q5BDA1 [details] [associations]
symbol:AN1479.2 "DNA-binding protein of the mitochondria
(Eurofung)" species:227321 "Aspergillus nidulans FGSC A4"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IBA] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0007131 "reciprocal meiotic
recombination" evidence=IRD] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IRD] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BN001307 GO:GO:0006298 GO:GO:0008094
EMBL:AACD01000022 GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 RefSeq:XP_659083.1 STRING:Q5BDA1
EnsemblFungi:CADANIAT00008100 GeneID:2875263 KEGG:ani:AN1479.2
OMA:RVGGFYE Uniprot:Q5BDA1
Length = 924
Score = 428 (155.7 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 99/256 (38%), Positives = 148/256 (57%)
Query: 486 SDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVEL---QGGVSYIP 542
+ V+ + DV SF A+ A + VRP + GT ++ RHP V+L + G ++
Sbjct: 654 ASVMDELDVACSF--ATLAAEQQLVRPILTE-GTNYKIIGG-RHPTVKLGLEEQGRRFVS 709
Query: 543 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRV 602
ND + E + L+TGPNM GKST++R + LAQ+G FVP D A I +VDQIF+R+
Sbjct: 710 NDCFLGESERIW-LITGPNMAGKSTFLRQNALITILAQVGSFVPADYAEIGIVDQIFSRI 768
Query: 603 GAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELAS 662
GAAD +R STFM+EM ETA ++K+ T S VI+DE+GRGT+ DG ++ + L
Sbjct: 769 GAADDLFRDQSTFMVEMLETAAILKQATARSFVIMDEVGRGTTPEDGTAVSFACLHHLHY 828
Query: 663 HRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQ-EDNLVLLYQVKPGSCVKSYGVHCA 721
Q TLFATHFH +A +++ P E E +++++ G +S+ + A
Sbjct: 829 RNQCRTLFATHFHGLADMTQEFPALGRYCTDVKETTEGRFSFVHKLRKGINRESHALKVA 888
Query: 722 KMAGYPEDMLEQARDL 737
++AG P + LE AR +
Sbjct: 889 QLAGLPSETLELARSV 904
Score = 46 (21.3 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 76 SEDKTLETVLTNT---VGVAIVDLDTKKFY 102
S++ + + +LT+ VG+A +DL T FY
Sbjct: 236 SDESSYQHILTSASQNVGLAWLDLSTGDFY 265
>UNIPROTKB|A2BEX4 [details] [associations]
symbol:MSH5-SAPCD1 "MutS protein homolog 5" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX4 Ensembl:ENST00000414514
Ensembl:ENST00000414810 Ensembl:ENST00000437726
Ensembl:ENST00000454820 Ensembl:ENST00000466318
Ensembl:ENST00000495073 HGNC:HGNC:41994 Uniprot:A2BEX4
Length = 496
Score = 377 (137.8 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 87/261 (33%), Positives = 142/261 (54%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 181 LTRVLDLASRLDVLLA--LASAARDYGYSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFV 236
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN + ++TGPN GKS Y++ +G+ F+A +G FVP + A I VD IFTR
Sbjct: 237 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 296
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA 661
+ + +S G+STFM+++ + A + T SLV+IDE G+GT+T DG + ++ R
Sbjct: 297 IHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWL 356
Query: 662 SHRQ--PFTLFATHFHEIALLSRVIPTFRNVQVSALEQ-ED--NLVLLYQVKPGSCVKSY 716
+ P AT+F + L +++P VQ +E ED +LV YQV G S+
Sbjct: 357 ARGPTCPHIFVATNFLSLVQL-QLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASH 415
Query: 717 GVHCAKMAGYPEDMLEQARDL 737
H A AG P+ ++ + +++
Sbjct: 416 ASHTAAQAGLPDKLVARGKEV 436
Score = 51 (23.0 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 35/153 (22%), Positives = 67/153 (43%)
Query: 251 TYDSLLGILDRCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHAAVN--ILVNN 298
T S LG+ D CR+ PQ +L +AQ L + +++ E A N ++ N
Sbjct: 1 TVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPN 60
Query: 299 TEARMNLHEYALRGLPDMQSLAMR--IGRKKAGLKDCYRVYEGVSQLPKLISI--LESLV 354
+ ++ + L GLP + R + + + C +Y + + L+SI L S+V
Sbjct: 61 IDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIY--IPLIGFLLSIPRLPSMV 118
Query: 355 Q--NVEASNLNTILSSLQSLKMMDRKDAVMDKM 385
+ + E + L+ + S + L + +D +
Sbjct: 119 EASDFEINGLDFMFLSEEKLHYRSARTKELDAL 151
>UNIPROTKB|O43196 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IRD] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0051026
"chiasma assembly" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007136 "meiotic prophase II" evidence=TAS]
[GO:0007126 "meiosis" evidence=TAS] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 EMBL:BA000025 EMBL:CH471081 EMBL:AF129756
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 Reactome:REACT_111183
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
EMBL:AL662834 GO:GO:0045143 EMBL:AF134726 EMBL:CR936239
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 EMBL:CR925765
KO:K08741 OMA:NDLVFFY EMBL:AF048986 EMBL:AF048991 EMBL:AF048988
EMBL:AF048989 EMBL:AF048990 EMBL:AF034759 EMBL:AF070071
EMBL:AF070079 EMBL:AF070072 EMBL:AF070073 EMBL:AF070074
EMBL:AF070075 EMBL:AF070076 EMBL:AF070077 EMBL:AF070078
EMBL:BT007200 EMBL:AY943816 EMBL:BC001358 EMBL:BC002498
EMBL:BC041031 IPI:IPI00172593 IPI:IPI00219362 IPI:IPI00297780
IPI:IPI00647584 RefSeq:NP_002432.1 RefSeq:NP_079535.4
RefSeq:NP_751897.1 RefSeq:NP_751898.1 UniGene:Hs.647011
ProteinModelPortal:O43196 SMR:O43196 IntAct:O43196 STRING:O43196
PhosphoSite:O43196 PRIDE:O43196 DNASU:4439 Ensembl:ENST00000375703
Ensembl:ENST00000375740 Ensembl:ENST00000375742
Ensembl:ENST00000375750 Ensembl:ENST00000375755
Ensembl:ENST00000416549 Ensembl:ENST00000419269
Ensembl:ENST00000427735 Ensembl:ENST00000435700
Ensembl:ENST00000436192 Ensembl:ENST00000441395
Ensembl:ENST00000441401 Ensembl:ENST00000448617
Ensembl:ENST00000456839 Ensembl:ENST00000457742
Ensembl:ENST00000497157 Ensembl:ENST00000534153
Ensembl:ENST00000578225 GeneID:4439 KEGG:hsa:4439 UCSC:uc003nwu.2
UCSC:uc003nwv.2 UCSC:uc003nwx.2 CTD:4439 GeneCards:GC06P031707
H-InvDB:HIX0165917 H-InvDB:HIX0166738 H-InvDB:HIX0167237
H-InvDB:HIX0167372 HGNC:HGNC:7328 MIM:603382 neXtProt:NX_O43196
PharmGKB:PA31136 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z
PhylomeDB:O43196 ChiTaRS:MSH5 GenomeRNAi:4439 NextBio:17301
ArrayExpress:O43196 Bgee:O43196 CleanEx:HS_MSH5
Genevestigator:O43196 GermOnline:ENSG00000204410 GO:GO:0007136
Uniprot:O43196
Length = 834
Score = 377 (137.8 bits), Expect = 3.7e-36, Sum P(3) = 3.7e-36
Identities = 87/261 (33%), Positives = 142/261 (54%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 519 LTRVLDLASRLDVLLA--LASAARDYGYSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFV 574
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN + ++TGPN GKS Y++ +G+ F+A +G FVP + A I VD IFTR
Sbjct: 575 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 634
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA 661
+ + +S G+STFM+++ + A + T SLV+IDE G+GT+T DG + ++ R
Sbjct: 635 IHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWL 694
Query: 662 SHRQ--PFTLFATHFHEIALLSRVIPTFRNVQVSALEQ-ED--NLVLLYQVKPGSCVKSY 716
+ P AT+F + L +++P VQ +E ED +LV YQV G S+
Sbjct: 695 ARGPTCPHIFVATNFLSLVQL-QLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASH 753
Query: 717 GVHCAKMAGYPEDMLEQARDL 737
H A AG P+ ++ + +++
Sbjct: 754 ASHTAAQAGLPDKLVARGKEV 774
Score = 91 (37.1 bits), Expect = 3.7e-36, Sum P(3) = 3.7e-36
Identities = 42/184 (22%), Positives = 76/184 (41%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVN--ILVNNTEARMNLHEYALR 311
SL GIL+RC G +LL W +P DL + R + +L N + LH L
Sbjct: 253 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRL-LG 311
Query: 312 GLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVE-----ASNLNTIL 366
+ ++ + R+ + D +Y+ V L SL Q+++ A + L
Sbjct: 312 HIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDL 371
Query: 367 SSLQSL--KMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNS 424
+ SL K++D + ++ + L + ++ +K +L P F + K +
Sbjct: 372 HHIASLIGKVVDFEGSLAENRFTVLPNIDPEID---EKKRRLMGLPS-FLTEVARKELEN 427
Query: 425 IDDR 428
+D R
Sbjct: 428 LDSR 431
Score = 59 (25.8 bits), Expect = 7.7e-33, Sum P(3) = 7.7e-33
Identities = 45/203 (22%), Positives = 83/203 (40%)
Query: 201 LINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILD 260
+I + L N D M Q + + K V + M H +T S LG+ D
Sbjct: 290 VIQFFLLPQNLD-MAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRD 348
Query: 261 RCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHAAVN--ILVNNTEARMNLHEY 308
CR+ PQ +L +AQ L + +++ E A N ++ N + ++ +
Sbjct: 349 ACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKR 408
Query: 309 ALRGLPDMQSLAMR--IGRKKAGLKDCYRVYEGVSQLPKLISI--LESLVQ--NVEASNL 362
L GLP + R + + + C +Y + + L+SI L S+V+ + E + L
Sbjct: 409 RLMGLPSFLTEVARKELENLDSRIPSCSVIY--IPLIGFLLSIPRLPSMVEASDFEINGL 466
Query: 363 NTILSSLQSLKMMDRKDAVMDKM 385
+ + S + L + +D +
Sbjct: 467 DFMFLSEEKLHYRSARTKELDAL 489
Score = 46 (21.3 bits), Expect = 3.7e-36, Sum P(3) = 3.7e-36
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 84 VLTNT--VGVAIVDL-DTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNK 140
VL N+ +G+A D D+ +M + PD + L+ ++ + +P+ + A+ ++N +
Sbjct: 54 VLWNSGYLGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQ-DENMTR 112
Query: 141 IV 142
+
Sbjct: 113 FL 114
>UNIPROTKB|Q6L4V0 [details] [associations]
symbol:P0010D04.9 "Putative uncharacterized protein
P0010D04.9" species:39947 "Oryza sativa Japonica Group" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:AP008211 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AC130605 RefSeq:NP_001055948.1 UniGene:Os.53982
GeneID:4339215 KEGG:osa:4339215 ProtClustDB:CLSN2695708
Uniprot:Q6L4V0
Length = 809
Score = 377 (137.8 bits), Expect = 4.1e-36, Sum P(2) = 4.1e-36
Identities = 89/281 (31%), Positives = 156/281 (55%)
Query: 464 QQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLV 523
+++I+ +++ + L + + A+ D ++S +I + YVRP + L
Sbjct: 483 ERAIIRDLVCRVCQFIPQLTKAVNFAAELDCILSLAIVAR--QNNYVRPILTE--DSILE 538
Query: 524 LNQCRHPIVELQGGVSYIPNDVYFKS-GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG 582
+ RH + E+ +++PND +S G + N++TGPN GKS YI+ + + VFLA IG
Sbjct: 539 IQNGRHALQEMTVD-TFVPNDTKIRSSGRI--NIITGPNYSGKSIYIKQVALVVFLAHIG 595
Query: 583 CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGR 642
FVP DSA + + D+IF +G+ S STFM+++ + T+++ T SL ++DE G+
Sbjct: 596 SFVPADSAIVGLTDRIFCAMGSK-SMTSEQSTFMIDLHQVGTMLRHATSRSLCLLDEFGK 654
Query: 643 GTSTFDGFGMACSIARELASHR-QPFTLFATHFHEIALLSRVIPTFRNVQ---VSAL--- 695
GT T DG G+ + P L +TH +I S +P +++ +S L
Sbjct: 655 GTLTEDGIGLLGGTISHFTDYDCPPKVLLSTHLTQIFTES-YLPQSEHIKCYTMSVLNPD 713
Query: 696 EQEDN--LVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQA 734
EQ DN ++ LY++ PG + S+G+HCA++AG P +++++A
Sbjct: 714 EQTDNEDVIFLYRLVPGQALLSFGLHCAQLAGVPSEVVQRA 754
Score = 93 (37.8 bits), Expect = 4.1e-36, Sum P(2) = 4.1e-36
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 201 LINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVL-----PQ-QGSTSAQTYDS 254
L++ L+ M ++ S+ I K++ + + +L + P G A+ S
Sbjct: 160 LLDTLDQMEGGASIAIDSVAQISLDKFLKLDATAHEALQIFQVDKHPSYMGIGRAKEGFS 219
Query: 255 LLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVER 288
+ G+L++C TP G LL W +P+ D+D I R
Sbjct: 220 VFGMLNKCVTPMGKHLLRTWFLRPIIDIDVINNR 253
Score = 38 (18.4 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 52 DKTLETVLVNKSNLSCFSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMG 104
++ L+T+ + S + IS DK L+ T + I +D YMG
Sbjct: 158 ERLLDTLDQMEGGASIAIDSVAQISLDKFLKLDATAHEALQIFQVDKHPSYMG 210
>MGI|MGI:1329021 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0007127 "meiosis I" evidence=IMP] [GO:0007129
"synapsis" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007292 "female gamete generation"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
MGI:MGI:1329021 GO:GO:0005524 GO:GO:0005654 EMBL:AF109905
GO:GO:0006298 Reactome:REACT_120463 GO:GO:0030983 GO:GO:0007292
GO:GO:0007131 Reactome:REACT_27235 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
EMBL:AF397035 EMBL:AF397036 KO:K08741 GeneTree:ENSGT00550000074977
CTD:4439 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z EMBL:AF146227
EMBL:AF107352 IPI:IPI00323518 RefSeq:NP_001139687.1
RefSeq:NP_038628.2 UniGene:Mm.24192 ProteinModelPortal:Q9QUM7
SMR:Q9QUM7 STRING:Q9QUM7 PhosphoSite:Q9QUM7 PRIDE:Q9QUM7
Ensembl:ENSMUST00000007250 Ensembl:ENSMUST00000097338 GeneID:17687
KEGG:mmu:17687 UCSC:uc008cfc.2 HOGENOM:HOG000006649
InParanoid:Q9QUM7 NextBio:292260 Bgee:Q9QUM7 CleanEx:MM_MSH5
Genevestigator:Q9QUM7 GermOnline:ENSMUSG00000007035 Uniprot:Q9QUM7
Length = 833
Score = 379 (138.5 bits), Expect = 4.4e-36, Sum P(3) = 4.4e-36
Identities = 88/261 (33%), Positives = 146/261 (55%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 518 LTRVLDLASRLDVLLA--LASAARDYGYSRPHYSPCIHGVRIRNG-RHPLMELCAR-TFV 573
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN + ++TGPN GKS Y++ +G+ F+A +G FVP + A I V+D IFTR
Sbjct: 574 PNSTDCGGDQGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGVIDAIFTR 633
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARE-L 660
+ + +S G+STFM+++ + A + TE+SLV+IDE G+GT++ DG + ++ R L
Sbjct: 634 IHSCESISLGLSTFMIDLNQVAKAVNNATEHSLVLIDEFGKGTNSVDGLALLAAVLRHWL 693
Query: 661 ASHRQ-PFTLFATHFHEIALLSRVIPTFRNVQVSALEQ-ED--NLVLLYQVKPGSCVKSY 716
A P AT+F + L +++P VQ +E ED +LV YQ+ G S+
Sbjct: 694 ALGPSCPHVFVATNFLSLVQL-QLLPQGPLVQYLTMETCEDGEDLVFFYQLCQGVASASH 752
Query: 717 GVHCAKMAGYPEDMLEQARDL 737
H A AG P+ ++ + +++
Sbjct: 753 ASHTAAQAGLPDPLIARGKEV 773
Score = 91 (37.1 bits), Expect = 4.4e-36, Sum P(3) = 4.4e-36
Identities = 27/107 (25%), Positives = 48/107 (44%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVN--ILVNNTEARMNLHEYALR 311
SL GIL+RCR G +LL W +P ++L + R + ++ N + LH L
Sbjct: 252 SLFGILNRCRCKWGQKLLRLWFTRPTRELRELNSRLDVIQFFLMPQNLDMAQMLHRL-LS 310
Query: 312 GLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVE 358
+ ++ + R+ + D +Y+ V L SL Q+++
Sbjct: 311 HIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQ 357
Score = 55 (24.4 bits), Expect = 2.4e-32, Sum P(3) = 2.4e-32
Identities = 47/195 (24%), Positives = 80/195 (41%)
Query: 186 LPEMCLTTATHCLRSLINYLE-----LMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHV 240
L + T T LR L + L+ LM +M Q + + K V + M H
Sbjct: 268 LLRLWFTRPTRELRELNSRLDVIQFFLMPQNLDMAQMLHRLLSHIKNVPLILKRMKLSHT 327
Query: 241 LPQQGSTSAQTYDSLLGILDRCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHA 290
+T S LG+ D CR+ PQ +L +AQ L + +++ E
Sbjct: 328 KVSDWQVLYKTVYSALGLRDACRSLPQSIQLFQDIAQEFSDDLHHIASLIGKVVDFEESL 387
Query: 291 AVN--ILVNNTEARMNLHEYALRGLPD-MQSLAMR-IGRKKAGLKDCYRVYEGVSQLPKL 346
A N ++ N + ++ + L GLP + +A + + + + C +Y + + L
Sbjct: 388 AENRFTVLPNIDPDIDAKKRRLIGLPSFLTEVAQKELENLDSRIPSCSVIY--IPLIGFL 445
Query: 347 ISILESLVQNVEASN 361
+SI L VEAS+
Sbjct: 446 LSI-PRLPFMVEASD 459
Score = 43 (20.2 bits), Expect = 4.4e-36, Sum P(3) = 4.4e-36
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 89 VGVAIVDL-DTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAE 132
+G+A D D+ +M + PD + L+ ++ + +P+ + A+
Sbjct: 60 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAK 104
>RGD|1563954 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0019237 "centromeric DNA binding" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0032302 "MutSbeta complex"
evidence=ISO] [GO:0043570 "maintenance of DNA repeat elements"
evidence=ISO] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO] [GO:0051096 "positive regulation of
helicase activity" evidence=ISO] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0032357 "oxidized
purine DNA binding" evidence=ISO] [GO:0003697 "single-stranded DNA
binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0032139 "dinucleotide insertion or deletion
binding" evidence=ISO] [GO:0032142 "single guanine insertion
binding" evidence=ISO] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=ISO] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000710
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOGENOM:HOG000029776
GO:GO:0016447 IPI:IPI00196502 UniGene:Rn.162551 EMBL:BC091283
ProteinModelPortal:Q5BJY1 STRING:Q5BJY1 UCSC:RGD:1563954
HOVERGEN:HBG071048 InParanoid:Q5BJY1 ArrayExpress:Q5BJY1
Genevestigator:Q5BJY1 Uniprot:Q5BJY1
Length = 265
Score = 396 (144.5 bits), Expect = 6.6e-36, P = 6.6e-36
Identities = 86/202 (42%), Positives = 122/202 (60%)
Query: 556 LVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTF 615
++TGPNMGGKS+YI+ + + V +AQIG +VP + ATI +VD IFTR GAAD+ Y+G STF
Sbjct: 11 IITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRRGAADNIYKGRSTF 70
Query: 616 MMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFH 675
M E+ +TA +I+K T+ SLVI+DELGRGTST DG +A + + TLF TH+
Sbjct: 71 MEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP 130
Query: 676 EIALLSRVIPT-FRNVQVSALEQED--------------NLVLLYQVKPGSCVKSYGVHC 720
+ L + P N + L ED ++ LYQ+ G +SYG++
Sbjct: 131 PVCELEKRYPEQVGNYHMGFLVNEDGSKQDSGDMEQMPDSVTFLYQITRGIAARSYGLNV 190
Query: 721 AKMAGYPEDMLEQARDLMKEYE 742
AK+A P ++L++A KE E
Sbjct: 191 AKLADVPREILQKAAHKSKELE 212
>UNIPROTKB|A2BEX2 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX2 Ensembl:ENST00000426512
Ensembl:ENST00000442688 Uniprot:A2BEX2
Length = 497
Score = 369 (135.0 bits), Expect = 9.9e-36, Sum P(2) = 9.9e-36
Identities = 87/262 (33%), Positives = 143/262 (54%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 181 LTRVLDLASRLDVLLA--LASAARDYGYSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFV 236
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN + ++TGPN GKS Y++ +G+ F+A +G FVP + A I VD IFTR
Sbjct: 237 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 296
Query: 602 VGAADSQYRGISTFMMEM-KETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAREL 660
+ + +S G+STFM+++ ++ A + T SLV+IDE G+GT+T DG + ++ R
Sbjct: 297 IHSCESISLGLSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHW 356
Query: 661 ASHRQ--PFTLFATHFHEIALLSRVIPTFRNVQVSALEQ-ED--NLVLLYQVKPGSCVKS 715
+ P AT+F + L +++P VQ +E ED +LV YQV G S
Sbjct: 357 LARGPTCPHIFVATNFLSLVQL-QLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKAS 415
Query: 716 YGVHCAKMAGYPEDMLEQARDL 737
+ H A AG P+ ++ + +++
Sbjct: 416 HASHTAAQAGLPDKLVARGKEV 437
Score = 51 (23.0 bits), Expect = 9.9e-36, Sum P(2) = 9.9e-36
Identities = 35/153 (22%), Positives = 67/153 (43%)
Query: 251 TYDSLLGILDRCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHAAVN--ILVNN 298
T S LG+ D CR+ PQ +L +AQ L + +++ E A N ++ N
Sbjct: 1 TVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPN 60
Query: 299 TEARMNLHEYALRGLPDMQSLAMR--IGRKKAGLKDCYRVYEGVSQLPKLISI--LESLV 354
+ ++ + L GLP + R + + + C +Y + + L+SI L S+V
Sbjct: 61 IDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIY--IPLIGFLLSIPRLPSMV 118
Query: 355 Q--NVEASNLNTILSSLQSLKMMDRKDAVMDKM 385
+ + E + L+ + S + L + +D +
Sbjct: 119 EASDFEINGLDFMFLSEEKLHYRSARTKELDAL 151
>RGD|1303008 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=ISO;IBA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0007127 "meiosis I"
evidence=ISO] [GO:0007129 "synapsis" evidence=ISO] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0007292
"female gamete generation" evidence=IEA;ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0008150
"biological_process" evidence=ND] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IRD] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 RGD:1303008 GO:GO:0005524 EMBL:BX883045
GO:GO:0006298 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 CTD:4439 HOVERGEN:HBG001449
OrthoDB:EOG4WSW8Z HOGENOM:HOG000006649 EMBL:BC083904
IPI:IPI00421996 RefSeq:NP_997701.2 UniGene:Rn.44043
ProteinModelPortal:Q6MG62 STRING:Q6MG62 PRIDE:Q6MG62
Ensembl:ENSRNOT00000060762 GeneID:294252 KEGG:rno:294252
UCSC:RGD:1303008 InParanoid:Q6MG62 NextBio:637830
Genevestigator:Q6MG62 GermOnline:ENSRNOG00000000857 Uniprot:Q6MG62
Length = 831
Score = 371 (135.7 bits), Expect = 7.4e-35, Sum P(3) = 7.4e-35
Identities = 87/261 (33%), Positives = 146/261 (55%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 516 LTRVLDLASRLDVLLA--LASAARDYGYSRPHYSPCIQGVRIKNG-RHPLMELCAR-TFV 571
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN + ++TGPN GKS Y++ +G+ F+A +G FVP + A I V+D IFTR
Sbjct: 572 PNSTDCGGDQGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGVIDAIFTR 631
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARE-L 660
+ + +S G+STFM+++ + A + TE+SLV+IDE G+GT++ DG + ++ R L
Sbjct: 632 IHSCESISLGLSTFMIDLNQVAKAVNNATEHSLVLIDEFGKGTNSVDGLALLTAVLRHWL 691
Query: 661 ASHRQ-PFTLFATHFHEIALLSRVIPTFRNVQVSALEQ-ED--NLVLLYQVKPGSCVKSY 716
A P AT+F + L +++P VQ +E ED +LV YQ+ G S+
Sbjct: 692 ALGPSCPHIFVATNFLSLVQL-QLLPQGPLVQYLTMETCEDGNDLVFFYQLCHGVASASH 750
Query: 717 GVHCAKMAGYPEDMLEQARDL 737
+ A AG P+ ++ + +++
Sbjct: 751 ASYTAAQAGLPDPLIARGKEV 771
Score = 88 (36.0 bits), Expect = 7.4e-35, Sum P(3) = 7.4e-35
Identities = 26/107 (24%), Positives = 48/107 (44%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVN--ILVNNTEARMNLHEYALR 311
SL GIL+RCR G +LL W +P ++L + R + ++ N + +H L
Sbjct: 250 SLFGILNRCRCRWGQKLLRLWFTRPTRELRELNSRLDVIEFFLMPQNLDMAQMMHRL-LS 308
Query: 312 GLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVE 358
+ ++ + R+ + D +Y+ V L SL Q+++
Sbjct: 309 HIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQ 355
Score = 56 (24.8 bits), Expect = 1.6e-31, Sum P(3) = 1.6e-31
Identities = 42/180 (23%), Positives = 75/180 (41%)
Query: 198 LRSLINYLE--LMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSL 255
L S ++ +E LM +M Q + + K V + M H +T S
Sbjct: 281 LNSRLDVIEFFLMPQNLDMAQMMHRLLSHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSA 340
Query: 256 LGILDRCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHAAVN--ILVNNTEARM 303
LG+ D CR+ PQ +L + Q L + +++ E A N ++ N + +
Sbjct: 341 LGLRDACRSLPQSIQLFRDITQEFSDDLHHIASLIGKVVDFEESLAENRFTVLPNIDPEI 400
Query: 304 NLHEYALRGLPD-MQSLAMR-IGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASN 361
+ + L GLP + +A + + + + C +Y + + L+SI L VEAS+
Sbjct: 401 DAKKRRLMGLPSFLTEVAQKELENLDSCIPSCSVIY--IPLIGFLLSI-PRLSFMVEASD 457
Score = 43 (20.2 bits), Expect = 7.4e-35, Sum P(3) = 7.4e-35
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 89 VGVAIVDL-DTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAE 132
+G+A D D+ +M + PD + L+ ++ + +P+ + A+
Sbjct: 58 LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAK 102
>UNIPROTKB|F1LXQ9 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 IPI:IPI00950406
Ensembl:ENSRNOT00000067613 ArrayExpress:F1LXQ9 Uniprot:F1LXQ9
Length = 266
Score = 386 (140.9 bits), Expect = 8.0e-35, P = 8.0e-35
Identities = 86/204 (42%), Positives = 122/204 (59%)
Query: 556 LVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRV--GAADSQYRGIS 613
++TGPNMGGKS+YI+ + + V +AQIG +VP + ATI +VD IFTR GAAD+ Y+G S
Sbjct: 10 IITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRQRRGAADNIYKGRS 69
Query: 614 TFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATH 673
TFM E+ +TA +I+K T+ SLVI+DELGRGTST DG +A + + TLF TH
Sbjct: 70 TFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTH 129
Query: 674 FHEIALLSRVIPT-FRNVQVSALEQED--------------NLVLLYQVKPGSCVKSYGV 718
+ + L + P N + L ED ++ LYQ+ G +SYG+
Sbjct: 130 YPPVCELEKRYPEQVGNYHMGFLVNEDGSKQDSGDMEQMPDSVTFLYQITRGIAARSYGL 189
Query: 719 HCAKMAGYPEDMLEQARDLMKEYE 742
+ AK+A P ++L++A KE E
Sbjct: 190 NVAKLADVPREILQKAAHKSKELE 213
>UNIPROTKB|Q74ZT2 [details] [associations]
symbol:AGOS_AGR116W "AGR116Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:AE016820 GenomeReviews:AE016820_GR GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261 PIRSF:PIRSF037677
HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5 RefSeq:NP_986782.2
STRING:Q74ZT2 EnsemblFungi:AAS54606 GeneID:4623084
KEGG:ago:AGOS_AGR116W Uniprot:Q74ZT2
Length = 1167
Score = 410 (149.4 bits), Expect = 1.2e-34, P = 1.2e-34
Identities = 129/497 (25%), Positives = 236/497 (47%)
Query: 265 PQGHRLLAQWMKQ--PLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMR 322
P RLLA+ P+KD D ++ + L+++ L+EY L G SL+
Sbjct: 625 PDLERLLARVHSGNLPIKDFDKVICGFENIVRLISS------LNEYELSG-----SLSRF 673
Query: 323 IGRKKAGLKDCYRVYEGVSQLPKLISILES-LVQNVEAS-NLNTILSSLQSLKMMDRKDA 380
+ + LK V + + +++ E +V N + + LS +++L+ + DA
Sbjct: 674 LHDIPSTLKS--DVESWTTLYDRNMAVSEGKVVPNAGVEPDFDVSLSKMRALE--EELDA 729
Query: 381 VMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRGGVR 440
V+ EY S + + + K ++ + + + + + S+ +T L + R
Sbjct: 730 VLS---EYKRSF--KCSKIQYK----DSGKELYTIELPISIAKSVPSNWTQLGANKSTKR 780
Query: 441 FQD---DRLATANTQYQAIQREYETHQQSIVEEVI--GISAGYTQTLNQLSDVLAQFDVL 495
+ +LA + + + + + E + + + S + T+ +S++ +
Sbjct: 781 YYSPKVQKLARSMAEARELHKILEEGLKGRLYQKFDQNFSTTWFPTIKAISNIDCILSLA 840
Query: 496 -VSFSIA-STCAP--KPYVRPCMKPMGTGSLVLNQCRHPIVE--LQGGVSYIPNDVYFKS 549
S S+ C P K + P G L + RHP + G +IPNDV+
Sbjct: 841 RTSESLGFPACRPNFKDEIDPTTGHKLNGYLSFKELRHPCYNAGVNGATEFIPNDVHLGK 900
Query: 550 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQY 609
L+TG N GKST +R ++V +AQ+GC+VPC+ A +S +D+I TR+GA D+
Sbjct: 901 STAQIALLTGANAAGKSTILRMTCIAVIMAQLGCYVPCEDAELSPMDRIMTRLGANDNIM 960
Query: 610 RGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTL 669
+G STF +E+ ET ++ T +L+++DELGRG S+ DGF +A + +++H Q
Sbjct: 961 QGKSTFFVELSETRKILDMATNRTLIVLDELGRGGSSSDGFAIAEGVLHHISTHVQSLGF 1020
Query: 670 FATHFHEIALLSRVIPTFRNVQVSALEQEDN--LVLLYQVKPGSCVKSYGVHCAKMAGYP 727
FATH+ + P + +Q++ L E + + LY++ G S+G+H A M G P
Sbjct: 1021 FATHYGTLGQSFTHHPMVKPLQMAILVDEGSKKVTFLYKLIEGQSEGSFGMHVAAMCGIP 1080
Query: 728 EDMLEQARDLMKEYEYS 744
++E A + +E++
Sbjct: 1081 RSVVENAERAAESFEHT 1097
Score = 172 (65.6 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 71/291 (24%), Positives = 127/291 (43%)
Query: 90 GVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNK 149
G A +D T + + E DD + L+ ++ Q PKE ++ L+ +KIV +
Sbjct: 397 GTAFIDTATGRICLLEFEDDSECTQLDTLMAQVRPKEVVMEKRNLSVIAHKIVKFNSQPD 456
Query: 150 VCMTGRKKNEFSE-EDLMQDVNRLVRFDDSELKNARLLP--EMCLTTATHCLRSLINYLE 206
R EF + +V+ F + A L + L++YL+
Sbjct: 457 CIFNYRTSAEFYDYARTFDEVSNGGYFAGMDSWPAILKQYYDQGKKVGFSAFGGLLSYLQ 516
Query: 207 LMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYD-----SLLGILDR 261
+ + ++ + +Y+ +S V+ + + Q A ++D +L +++R
Sbjct: 517 WLKLDKSLLSMGMVE-EYNPLKAQTSLVLDGITL--QNLEIFANSFDGTDKGTLFKLVNR 573
Query: 262 CRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAM 321
TP G R + W+ PL + I ER +V+ L+N R +L E +L GLPD++ L
Sbjct: 574 AITPMGKRQMRTWVMHPLLRKEHIEERLDSVDQLLNEMPIR-DLLESSLTGLPDLERLLA 632
Query: 322 RIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASN-LNTILSSLQS 371
R+ +KD +V G + +LIS L + S L+ I S+L+S
Sbjct: 633 RVHSGNLPIKDFDKVICGFENIVRLISSLNEYELSGSLSRFLHDIPSTLKS 683
>UNIPROTKB|B4DZX3 [details] [associations]
symbol:MSH5 "cDNA FLJ54211, highly similar to MutS protein
homolog 5" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:AK303129
IPI:IPI01015677 SMR:B4DZX3 STRING:B4DZX3 Ensembl:ENST00000431848
Ensembl:ENST00000547775 Ensembl:ENST00000549618
Ensembl:ENST00000551879 Uniprot:B4DZX3
Length = 533
Score = 377 (137.8 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 87/261 (33%), Positives = 142/261 (54%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 218 LTRVLDLASRLDVLLA--LASAARDYGYSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFV 273
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN + ++TGPN GKS Y++ +G+ F+A +G FVP + A I VD IFTR
Sbjct: 274 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 333
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA 661
+ + +S G+STFM+++ + A + T SLV+IDE G+GT+T DG + ++ R
Sbjct: 334 IHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWL 393
Query: 662 SHRQ--PFTLFATHFHEIALLSRVIPTFRNVQVSALEQ-ED--NLVLLYQVKPGSCVKSY 716
+ P AT+F + L +++P VQ +E ED +LV YQV G S+
Sbjct: 394 ARGPTCPHIFVATNFLSLVQL-QLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASH 452
Query: 717 GVHCAKMAGYPEDMLEQARDL 737
H A AG P+ ++ + +++
Sbjct: 453 ASHTAAQAGLPDKLVARGKEV 473
Score = 52 (23.4 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 35/154 (22%), Positives = 68/154 (44%)
Query: 250 QTYDSLLGILDRCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHAAVN--ILVN 297
+T S LG+ D CR+ PQ +L +AQ L + +++ E A N ++
Sbjct: 37 KTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLP 96
Query: 298 NTEARMNLHEYALRGLPDMQSLAMR--IGRKKAGLKDCYRVYEGVSQLPKLISI--LESL 353
N + ++ + L GLP + R + + + C +Y + + L+SI L S+
Sbjct: 97 NIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIY--IPLIGFLLSIPRLPSM 154
Query: 354 VQ--NVEASNLNTILSSLQSLKMMDRKDAVMDKM 385
V+ + E + L+ + S + L + +D +
Sbjct: 155 VEASDFEINGLDFMFLSEEKLHYRSARTKELDAL 188
>UNIPROTKB|Q5SSQ8 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL662834 EMBL:CR936239
SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00797508 SMR:Q5SSQ8
Ensembl:ENST00000436559 Ensembl:ENST00000458144 UCSC:uc011iri.2
Uniprot:Q5SSQ8
Length = 821
Score = 342 (125.4 bits), Expect = 3.3e-32, Sum P(3) = 3.3e-32
Identities = 88/278 (31%), Positives = 147/278 (52%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 536 LTRVLDLASRLDVLLA--LASAARDYGYSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFV 591
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN + ++TGPN GKS Y++ +G+ F+A +G FVP + A I VD IFTR
Sbjct: 592 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 651
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA 661
+ + +S G+STFM+++ + A + T SLV+IDE G+GT+T DG + ++ R
Sbjct: 652 IHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWL 711
Query: 662 SHRQ--PFTLFATHFHEIALLSRVIPTFRNVQVSALEQ-ED--NLVLLYQVKPGSCVKSY 716
+ P AT+F + L +++P VQ +E ED +LV YQV ++S
Sbjct: 712 ARGPTCPHIFVATNFLSLVQL-QLLPQGPLVQYLTMETCEDGNDLVFFYQVS--DLIRS- 767
Query: 717 GVHCAKMAGY-PEDMLEQARDLMKEYEYSLDTKTPSGD 753
G + ++ +E + L+ ++ LD + P+ D
Sbjct: 768 GKPIKPVKDLLKKNQMENCQTLVDKF-MKLDLEDPNLD 804
Score = 91 (37.1 bits), Expect = 3.3e-32, Sum P(3) = 3.3e-32
Identities = 42/184 (22%), Positives = 76/184 (41%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVN--ILVNNTEARMNLHEYALR 311
SL GIL+RC G +LL W +P DL + R + +L N + LH L
Sbjct: 270 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRL-LG 328
Query: 312 GLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVE-----ASNLNTIL 366
+ ++ + R+ + D +Y+ V L SL Q+++ A + L
Sbjct: 329 HIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDL 388
Query: 367 SSLQSL--KMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNS 424
+ SL K++D + ++ + L + ++ +K +L P F + K +
Sbjct: 389 HHIASLIGKVVDFEGSLAENRFTVLPNIDPEID---EKKRRLMGLPS-FLTEVARKELEN 444
Query: 425 IDDR 428
+D R
Sbjct: 445 LDSR 448
Score = 59 (25.8 bits), Expect = 6.8e-29, Sum P(3) = 6.8e-29
Identities = 45/203 (22%), Positives = 83/203 (40%)
Query: 201 LINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILD 260
+I + L N D M Q + + K V + M H +T S LG+ D
Sbjct: 307 VIQFFLLPQNLD-MAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRD 365
Query: 261 RCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHAAVN--ILVNNTEARMNLHEY 308
CR+ PQ +L +AQ L + +++ E A N ++ N + ++ +
Sbjct: 366 ACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKR 425
Query: 309 ALRGLPDMQSLAMR--IGRKKAGLKDCYRVYEGVSQLPKLISI--LESLVQ--NVEASNL 362
L GLP + R + + + C +Y + + L+SI L S+V+ + E + L
Sbjct: 426 RLMGLPSFLTEVARKELENLDSRIPSCSVIY--IPLIGFLLSIPRLPSMVEASDFEINGL 483
Query: 363 NTILSSLQSLKMMDRKDAVMDKM 385
+ + S + L + +D +
Sbjct: 484 DFMFLSEEKLHYRSARTKELDAL 506
Score = 46 (21.3 bits), Expect = 3.3e-32, Sum P(3) = 3.3e-32
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 84 VLTNT--VGVAIVDL-DTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNK 140
VL N+ +G+A D D+ +M + PD + L+ ++ + +P+ + A+ ++N +
Sbjct: 54 VLWNSGYLGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQ-DENMTR 112
Query: 141 IV 142
+
Sbjct: 113 FL 114
>UNIPROTKB|B0V0L9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334 EMBL:CR759915
UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5
SMR:B0V0L9 Ensembl:ENST00000458424 Uniprot:B0V0L9
Length = 466
Score = 342 (125.4 bits), Expect = 3.3e-32, Sum P(2) = 3.3e-32
Identities = 88/278 (31%), Positives = 147/278 (52%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 181 LTRVLDLASRLDVLLA--LASAARDYGYSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFV 236
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN + ++TGPN GKS Y++ +G+ F+A +G FVP + A I VD IFTR
Sbjct: 237 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 296
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA 661
+ + +S G+STFM+++ + A + T SLV+IDE G+GT+T DG + ++ R
Sbjct: 297 IHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWL 356
Query: 662 SHRQ--PFTLFATHFHEIALLSRVIPTFRNVQVSALEQ-ED--NLVLLYQVKPGSCVKSY 716
+ P AT+F + L +++P VQ +E ED +LV YQV ++S
Sbjct: 357 ARGPTCPHIFVATNFLSLVQL-QLLPQGPLVQYLTMETCEDGNDLVFFYQVS--DLIRS- 412
Query: 717 GVHCAKMAGY-PEDMLEQARDLMKEYEYSLDTKTPSGD 753
G + ++ +E + L+ ++ LD + P+ D
Sbjct: 413 GKPIKPVKDLLKKNQMENCQTLVDKF-MKLDLEDPNLD 449
Score = 51 (23.0 bits), Expect = 3.3e-32, Sum P(2) = 3.3e-32
Identities = 35/153 (22%), Positives = 67/153 (43%)
Query: 251 TYDSLLGILDRCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHAAVN--ILVNN 298
T S LG+ D CR+ PQ +L +AQ L + +++ E A N ++ N
Sbjct: 1 TVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPN 60
Query: 299 TEARMNLHEYALRGLPDMQSLAMR--IGRKKAGLKDCYRVYEGVSQLPKLISI--LESLV 354
+ ++ + L GLP + R + + + C +Y + + L+SI L S+V
Sbjct: 61 IDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIY--IPLIGFLLSIPRLPSMV 118
Query: 355 Q--NVEASNLNTILSSLQSLKMMDRKDAVMDKM 385
+ + E + L+ + S + L + +D +
Sbjct: 119 EASDFEINGLDFMFLSEEKLHYRSARTKELDAL 151
>WB|WBGene00003421 [details] [associations]
symbol:msh-5 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0051026
"chiasma assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0045143 "homologous chromosome
segregation" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070 PIR:T20659
PIR:T20660 PIR:T43201 RefSeq:NP_502531.1 UniGene:Cel.19456
ProteinModelPortal:Q19272 STRING:Q19272 EnsemblMetazoa:F09E8.3
GeneID:178268 KEGG:cel:CELE_F09E8.3 UCSC:F09E8.3 CTD:178268
WormBase:F09E8.3 GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447
InParanoid:Q19272 OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3
Uniprot:Q19272
Length = 1369
Score = 344 (126.2 bits), Expect = 3.3e-32, Sum P(2) = 3.3e-32
Identities = 115/452 (25%), Positives = 201/452 (44%)
Query: 346 LISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIK 405
+I+ ES +Q + +N I L ++ D + + + + RL L +
Sbjct: 432 IINFAESKIQG-RVTVMNGIDEELDEIR--DTYENMPMVLTAIAKQEEARLGLPPYSNVA 488
Query: 406 LENSPQ-GFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQ 464
P GF + T+L + +R ++ + + ++ I Q
Sbjct: 489 CVYIPLVGFVLSVPRDYGVESQPDMTLLYSTHEDLRVRNATTSRLDDEFGDILMRLIDSQ 548
Query: 465 QSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVL 524
+I+ + +++ +L + ++ DVL+SF + + A + P + V
Sbjct: 549 TAIILTLKTRVMKKKRSIIKLLSIASRIDVLISFGLIA--AQNGWNCPALVDEPVIEAV- 605
Query: 525 NQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCF 584
+ HPI L S++PN V + +++TGPN GKS Y++SIG+ VFL+ IG F
Sbjct: 606 -ELYHPISVLVVKKSFVPNQVSSGRDGIKASIITGPNACGKSVYMKSIGIMVFLSHIGSF 664
Query: 585 VPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGT 644
VP A I +VD+I TR+ DS G+STF ++++ A ++K T NSLVIIDE G+GT
Sbjct: 665 VPARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVALALRKATGNSLVIIDEFGKGT 724
Query: 645 STFDGFGMACSIAR---ELASHRQPFTLFATHFHEIAL---LSRVIPTFRNVQVSALEQE 698
T G + S+ + R P ++HFH + L I TF V E
Sbjct: 725 MTEVGLSLLASVMTYWMNRGADRCPHIFLSSHFHALPNYIPLETNIATFLTFTVLR-EAG 783
Query: 699 DNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETNNR 758
+ L+++ PG S+ + AK G P ++ +A + K + K + +N+
Sbjct: 784 GKIKYLFRMTPGLVDCSFALSVAKEEGIPPPVIGRACRIYKALKAGTLLKEIKAEVSNDN 843
Query: 759 EEEYFKTVQEGEYQMFDFLQQCLSLSKQKDTN 790
E++ + + F+ S K+K T+
Sbjct: 844 EKQLVEDMDVVLADEDGFMAAVESFVKRKKTS 875
Score = 99 (39.9 bits), Expect = 3.3e-32, Sum P(2) = 3.3e-32
Identities = 50/235 (21%), Positives = 104/235 (44%)
Query: 129 LPAEY--LNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLL 186
LPA+ L +N ++ ++R K M G + +EED + +RFD + R
Sbjct: 185 LPAKLNKLPNNFFRMSRAIERLKA-MAGSHDSSMTEEDKYIIIK--MRFDIEAVNMIRSF 241
Query: 187 PEMCLTTATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGS 246
+ L + + L + + ++ F++ ++ V + + +L +LP++ +
Sbjct: 242 GALLLFLDETRMGVTDDPLSVTSPIKSIKTFTLGNL-----VEIDFNTIQALDILPKE-T 295
Query: 247 TSAQTYD---SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARM 303
+ +T+ SL ++D+CR+ G + L +W + P D D +V R V+ + A +
Sbjct: 296 ENKKTFGQGRSLYQLMDKCRSTVGKKCLRKWFRNPTTDRDDLVSRQKCVHYFKQDWNAEV 355
Query: 304 NLHEYALRG-LPDMQSLAMRIGRKKAGLK--DCYRVYEGVSQLPKLISILESLVQ 355
++ G + + S+ + A L +C+ VS + L+ IL + Q
Sbjct: 356 TAKLSSILGRVKALNSVFQKFQSGTAQLIHWECF-----VSTVNALVEILNIIRQ 405
>UNIPROTKB|Q19272 [details] [associations]
symbol:msh-5 "MutS protein homolog 5" species:6239
"Caenorhabditis elegans" [GO:0005634 "nucleus" evidence=IMP]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070
PIR:T20659 PIR:T20660 PIR:T43201 RefSeq:NP_502531.1
UniGene:Cel.19456 ProteinModelPortal:Q19272 STRING:Q19272
EnsemblMetazoa:F09E8.3 GeneID:178268 KEGG:cel:CELE_F09E8.3
UCSC:F09E8.3 CTD:178268 WormBase:F09E8.3
GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447 InParanoid:Q19272
OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3 Uniprot:Q19272
Length = 1369
Score = 344 (126.2 bits), Expect = 3.3e-32, Sum P(2) = 3.3e-32
Identities = 115/452 (25%), Positives = 201/452 (44%)
Query: 346 LISILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIK 405
+I+ ES +Q + +N I L ++ D + + + + RL L +
Sbjct: 432 IINFAESKIQG-RVTVMNGIDEELDEIR--DTYENMPMVLTAIAKQEEARLGLPPYSNVA 488
Query: 406 LENSPQ-GFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQ 464
P GF + T+L + +R ++ + + ++ I Q
Sbjct: 489 CVYIPLVGFVLSVPRDYGVESQPDMTLLYSTHEDLRVRNATTSRLDDEFGDILMRLIDSQ 548
Query: 465 QSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVL 524
+I+ + +++ +L + ++ DVL+SF + + A + P + V
Sbjct: 549 TAIILTLKTRVMKKKRSIIKLLSIASRIDVLISFGLIA--AQNGWNCPALVDEPVIEAV- 605
Query: 525 NQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCF 584
+ HPI L S++PN V + +++TGPN GKS Y++SIG+ VFL+ IG F
Sbjct: 606 -ELYHPISVLVVKKSFVPNQVSSGRDGIKASIITGPNACGKSVYMKSIGIMVFLSHIGSF 664
Query: 585 VPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGT 644
VP A I +VD+I TR+ DS G+STF ++++ A ++K T NSLVIIDE G+GT
Sbjct: 665 VPARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVALALRKATGNSLVIIDEFGKGT 724
Query: 645 STFDGFGMACSIAR---ELASHRQPFTLFATHFHEIAL---LSRVIPTFRNVQVSALEQE 698
T G + S+ + R P ++HFH + L I TF V E
Sbjct: 725 MTEVGLSLLASVMTYWMNRGADRCPHIFLSSHFHALPNYIPLETNIATFLTFTVLR-EAG 783
Query: 699 DNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETNNR 758
+ L+++ PG S+ + AK G P ++ +A + K + K + +N+
Sbjct: 784 GKIKYLFRMTPGLVDCSFALSVAKEEGIPPPVIGRACRIYKALKAGTLLKEIKAEVSNDN 843
Query: 759 EEEYFKTVQEGEYQMFDFLQQCLSLSKQKDTN 790
E++ + + F+ S K+K T+
Sbjct: 844 EKQLVEDMDVVLADEDGFMAAVESFVKRKKTS 875
Score = 99 (39.9 bits), Expect = 3.3e-32, Sum P(2) = 3.3e-32
Identities = 50/235 (21%), Positives = 104/235 (44%)
Query: 129 LPAEY--LNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLL 186
LPA+ L +N ++ ++R K M G + +EED + +RFD + R
Sbjct: 185 LPAKLNKLPNNFFRMSRAIERLKA-MAGSHDSSMTEEDKYIIIK--MRFDIEAVNMIRSF 241
Query: 187 PEMCLTTATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGS 246
+ L + + L + + ++ F++ ++ V + + +L +LP++ +
Sbjct: 242 GALLLFLDETRMGVTDDPLSVTSPIKSIKTFTLGNL-----VEIDFNTIQALDILPKE-T 295
Query: 247 TSAQTYD---SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARM 303
+ +T+ SL ++D+CR+ G + L +W + P D D +V R V+ + A +
Sbjct: 296 ENKKTFGQGRSLYQLMDKCRSTVGKKCLRKWFRNPTTDRDDLVSRQKCVHYFKQDWNAEV 355
Query: 304 NLHEYALRG-LPDMQSLAMRIGRKKAGLK--DCYRVYEGVSQLPKLISILESLVQ 355
++ G + + S+ + A L +C+ VS + L+ IL + Q
Sbjct: 356 TAKLSSILGRVKALNSVFQKFQSGTAQLIHWECF-----VSTVNALVEILNIIRQ 405
>UNIPROTKB|Q7S0U7 [details] [associations]
symbol:NCU07407 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0043504 "mitochondrial DNA repair" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 OMA:RVGGFYE EMBL:AABX02000038
RefSeq:XP_958182.2 UniGene:Ncr.21352 EnsemblFungi:EFNCRT00000007377
GeneID:3874329 KEGG:ncr:NCU07407 Uniprot:Q7S0U7
Length = 1184
Score = 362 (132.5 bits), Expect = 8.9e-32, Sum P(3) = 8.9e-32
Identities = 95/279 (34%), Positives = 156/279 (55%)
Query: 488 VLAQFDVLVSFSIASTCAPKPYVRPCM---------KPMGTGSLVLNQCRHPIVE---LQ 535
VL + D+ S +A + VRP + + MGT ++++ RHP VE L
Sbjct: 902 VLDELDIATS--LARLATEQNLVRPILHDSSTTNGSQGMGTRTVIVGG-RHPTVEPSLLS 958
Query: 536 GGVSYIPNDVYFKS-GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISV 594
G+++ ND S G+ + L+TGPNM GKST++R + LAQ+GC+VP D A + +
Sbjct: 959 RGMTFQKNDCLIGSPGQGAIWLITGPNMAGKSTFLRQNALITILAQMGCYVPADYAELGI 1018
Query: 595 VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMAC 654
VD IF+RVG+AD+ Y STFM+EM ETA ++++ T S VI+DE+GRGT+ DG +A
Sbjct: 1019 VDAIFSRVGSADNLYADQSTFMVEMMETAAILRQATPRSFVIMDEIGRGTTPEDGTAVAF 1078
Query: 655 SIARELASHRQPFTLFATHFHEIA-LLSRVIPTFRNVQVSA------------LEQEDN- 700
+ L + + LFATHFH + +L + SA +E++++
Sbjct: 1079 ASLHHLLTVNKCRGLFATHFHAVGDMLKEQGLVVEDGASSAGASWGVAMYCTDVEEDESG 1138
Query: 701 -LVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLM 738
V +++++ G +S+ + A++AG PE ++ A+ ++
Sbjct: 1139 GFVYVHKLRKGMNRQSHALKVARLAGLPEPAIKIAQQVL 1177
Score = 74 (31.1 bits), Expect = 8.9e-32, Sum P(3) = 8.9e-32
Identities = 25/108 (23%), Positives = 44/108 (40%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGL 313
SLL + R T G RLL +W+ P L I R + ++N + + L
Sbjct: 509 SLLHAIRRTVTKSGARLLNEWLSAPSTSLSVINSRLDLITRFISNPDLSDAI-TVLLHRS 567
Query: 314 PDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASN 361
D Q L + + D R+ + +++ L+S + + E +N
Sbjct: 568 HDTQRLVQKFALNRGDADDLLRLASTIKATEDIVNHLKSTMSS-EDNN 614
Score = 46 (21.3 bits), Expect = 8.9e-32, Sum P(3) = 8.9e-32
Identities = 27/105 (25%), Positives = 43/105 (40%)
Query: 153 TGRKKNEFSEE-DLMQD----------VNRLVRFDDSELKNARLLPEMCLTTATHCLRSL 201
TG+KK SE ++D ++RF D E+K +L L T L+ L
Sbjct: 414 TGQKKESLSENIQTLKDWAPMLDAKIPTETVIRFTDDEIKAGNVL----LHYVTDRLQGL 469
Query: 202 INYLELMNNEDNM-----NQFSIHSIDYSKYVHMSSAVMSSLHVL 241
L+ DNM ++ S+ S++ K + S LH +
Sbjct: 470 SMKLQPPIRHDNMQIMTIDKNSMRSLEIKKTMREGFFAGSLLHAI 514
>UNIPROTKB|A3KGM9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00790547
SMR:A3KGM9 Ensembl:ENST00000412975 UCSC:uc011iro.1 Uniprot:A3KGM9
Length = 401
Score = 322 (118.4 bits), Expect = 2.9e-31, Sum P(2) = 2.9e-31
Identities = 70/206 (33%), Positives = 115/206 (55%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 193 LTRVLDLASRLDVLLA--LASAARDYGYSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFV 248
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN + ++TGPN GKS Y++ +G+ F+A +G FVP + A I VD IFTR
Sbjct: 249 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 308
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA 661
+ + +S G+STFM+++ + A + T SLV+IDE G+GT+T DG + ++ R
Sbjct: 309 IHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWL 368
Query: 662 SHRQ--PFTLFATHFHEIALLSRVIP 685
+ P AT+F + L +++P
Sbjct: 369 ARGPTCPHIFVATNFLSLVQL-QLLP 393
Score = 57 (25.1 bits), Expect = 2.9e-31, Sum P(2) = 2.9e-31
Identities = 36/155 (23%), Positives = 69/155 (44%)
Query: 249 AQTYDSLLGILDRCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHAAVN--ILV 296
+QT S LG+ D CR+ PQ +L +AQ L + +++ E A N ++
Sbjct: 11 SQTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVL 70
Query: 297 NNTEARMNLHEYALRGLPDMQSLAMR--IGRKKAGLKDCYRVYEGVSQLPKLISI--LES 352
N + ++ + L GLP + R + + + C +Y + + L+SI L S
Sbjct: 71 PNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIY--IPLIGFLLSIPRLPS 128
Query: 353 LVQ--NVEASNLNTILSSLQSLKMMDRKDAVMDKM 385
+V+ + E + L+ + S + L + +D +
Sbjct: 129 MVEASDFEINGLDFMFLSEEKLHYRSARTKELDAL 163
>CGD|CAL0002525 [details] [associations]
symbol:orf19.2579 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0002525 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000044 EMBL:AACQ01000043 KO:K08740
SUPFAM:SSF48334 SUPFAM:SSF53150 RefSeq:XP_718245.1
RefSeq:XP_718341.1 ProteinModelPortal:Q5A989 STRING:Q5A989
GeneID:3639992 GeneID:3640161 KEGG:cal:CaO19.10111
KEGG:cal:CaO19.2579 Uniprot:Q5A989
Length = 803
Score = 339 (124.4 bits), Expect = 5.0e-31, Sum P(2) = 5.0e-31
Identities = 100/383 (26%), Positives = 193/383 (50%)
Query: 363 NTILSSLQSLKMMDRK--DAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMK 420
N + S + L + R+ + +++++ E + + L + + ++ +GF +I K
Sbjct: 365 NAVKSGVNGLLDVSRRIRETLLEEVSELVAKLSEELEIFMEYRFEIS---RGFFIKI--K 419
Query: 421 LNNS-IDDRYTIL-DTV--RGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISA 476
NN+ I+ +L + V R + L +++Y I E T +I+ ++
Sbjct: 420 GNNTDINSLPEVLINRVKKRKTIECTTIELMKQSSRYNDIVSEITTLNSTIIHDMYTSIN 479
Query: 477 GYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQG 536
YT L +S+ + D+L SF+ ++ Y C P + + + HPI L G
Sbjct: 480 SYTPILLMVSEAIGTLDLLCSFAYFTSLQKDSYT--C--PEFAKEVTIMRSLHPI--LGG 533
Query: 537 GVS-YIPNDVYFKSGEVS-FNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISV 594
S ++ N+ Y + E+S +++TG NM GKS Y+R I V +AQ+GCFVP + A + +
Sbjct: 534 NNSNFVANN-YSCNHELSRIHVITGANMSGKSVYLRQIAYLVIMAQMGCFVPAEYARMRI 592
Query: 595 VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMAC 654
+ +++R+ ++D+ S+F EM ETA ++ +SL++IDELGRG+S DGF +
Sbjct: 593 FNSLYSRI-SSDNVDINASSFSKEMSETAVILNDSDGDSLILIDELGRGSSLTDGFSICL 651
Query: 655 SIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPG-SCV 713
+I +L ++ + THF +IA + + +E L + Y + G + +
Sbjct: 652 AILEDLIC-KEATVITTTHFRDIAQVLANKSCVVTAHMQTVETNGQLEMKYNLVLGRNGI 710
Query: 714 KSYGVHCAKMAGY-PEDMLEQAR 735
YG+ A+++ P++++E ++
Sbjct: 711 VGYGIRFAEVSNLLPQELIEDSK 733
Score = 85 (35.0 bits), Expect = 5.0e-31, Sum P(2) = 5.0e-31
Identities = 46/234 (19%), Positives = 89/234 (38%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRN 148
VGV+++ L T + + D + I P +LP + K+ I+ N
Sbjct: 54 VGVSVLKLKTLELTLMSFCDSSTFVRTVNQIQVYEPTSIILPEAQSHSQIEKLKYIIHSN 113
Query: 149 ---KVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYL 205
KV K F+ D M + ++S L ++ L A C I+Y
Sbjct: 114 ISDKVRERFMKAKAFNAFDGMNSLKLYTDINESTLGQVISNRKLSLAAANAC----IDYC 169
Query: 206 ELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTP 265
N+ + + + + + L ++ T Y L+ C T
Sbjct: 170 VSTKMFRVTNKIRLKYCMCENTMLIDTCTVRDLELVDSLSETGTTLYS----FLNCCLTK 225
Query: 266 QGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSL 319
G R+L + QP ++I+ R +V L+N+ +A +++ +L+ D++ +
Sbjct: 226 MGMRILRTSILQPSTHENSIILRSESVQELINDEDALISIRS-SLKHTCDLEKV 278
>DICTYBASE|DDB_G0284747 [details] [associations]
symbol:msh5 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0003684 "damaged DNA
binding" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0284747
GO:GO:0005524 GenomeReviews:CM000153_GR EMBL:AAFI02000071
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 SUPFAM:SSF53150 KO:K08741 RefSeq:XP_638383.1
EnsemblProtists:DDB0231220 GeneID:8624752 KEGG:ddi:DDB_G0284747
InParanoid:Q54P75 OMA:FAAELDC ProtClustDB:CLSZ2728934
Uniprot:Q54P75
Length = 880
Score = 282 (104.3 bits), Expect = 1.7e-30, Sum P(3) = 1.7e-30
Identities = 80/260 (30%), Positives = 127/260 (48%)
Query: 441 FQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSI 500
FQ+ + + + I + Q I +EV+ + ++ L + Q D ++S +
Sbjct: 483 FQNQKTKELDDFFGDIHNDILDIQSRIEKEVVDEIMSNSGSIIDLCNYCTQLDCILS--L 540
Query: 501 ASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGP 560
AS V+P + + + RH I E ++IPND +V+GP
Sbjct: 541 ASCVQAYDLVKPIISTEQQ-EIEIQSGRHLIQEYCV-TNFIPNDTQ-NDPTKPVVIVSGP 597
Query: 561 NMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMK 620
N GKS YI+ + + VFL QIG +VP SATIS+ D I+TR+ + +S S+FM++ K
Sbjct: 598 NQSGKSIYIKQVALIVFLGQIGSYVPAKSATISLFDHIYTRISSRESNAISESSFMIDCK 657
Query: 621 ETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA--SHRQPFTLFATHFHEI- 677
+ A + + T SL+IIDE G+GT+ DG + + L S P T THF+E
Sbjct: 658 QIAQMTRFATSRSLLIIDEYGKGTNPLDGISLLYGLLVFLLTKSPSTPKTFICTHFYEFF 717
Query: 678 ALLSRVIPT-FRNVQVSALE 696
L+S + F V + +E
Sbjct: 718 ELISNSTDSIFNKVLFNTME 737
Score = 111 (44.1 bits), Expect = 1.7e-30, Sum P(3) = 1.7e-30
Identities = 34/152 (22%), Positives = 72/152 (47%)
Query: 201 LINYLE---LMNNEDNMNQFSIHSI---DYSKYVHMSSAVMSSLHVLPQQGSTSAQTYD- 253
L++YL L+++ D+++ I+ I ++Y+ + + + SL + Q S ++
Sbjct: 192 LLSYLSKYILLDDFDSLDNLIINEICPITLNQYLLLDNNTLFSLQIFSNQNHPSCYSFGN 251
Query: 254 -----SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVN--NTEARMNLH 306
SL G+ D+ +T G +LL W +P ++ I ER + + N+ + L
Sbjct: 252 SKEGLSLFGLFDKTKTTMGKKLLKTWFMRPSRNRFVIEERQNLIQFFSSQENSSLKFELL 311
Query: 307 EYALRGLPDMQSLAMRIGRKKAGLKDCYRVYE 338
+ L+ + D++ + RI + KD +Y+
Sbjct: 312 DN-LKNIKDLKIILSRISSSQNPSKDFISIYK 342
Score = 76 (31.8 bits), Expect = 1.7e-30, Sum P(3) = 1.7e-30
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 699 DNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLM---KEYE 742
+ + Y++K G S+G+ CAK+AG E+++ +A ++M K+Y+
Sbjct: 786 NEFIPFYKLKEGISSSSFGILCAKIAGVNENVVNRAYEIMDHQKQYK 832
Score = 60 (26.2 bits), Expect = 3.3e-25, Sum P(3) = 3.3e-25
Identities = 37/146 (25%), Positives = 57/146 (39%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILD-R 147
+GVA D Y+ + +D+ +S L +I +PK ++P+ + I+ LD
Sbjct: 64 IGVAYYDRLESNIYLCQCWEDENFSCLNSIKQLINPKVIIIPSRMPQKFIDNILRNLDDS 123
Query: 148 NKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLEL 207
N+ KN D F+ S+ + L MC T T I Y L
Sbjct: 124 NENNEKQTSKNTQYHYSRFSDFT----FESSKNRLLNLKLSMCNTNNT-----TIKYTFL 174
Query: 208 MN--NEDNMNQFSIHS--IDY-SKYV 228
N N DN+ + Y SKY+
Sbjct: 175 QNVFNFDNIEMIRAVGGLLSYLSKYI 200
Score = 42 (19.8 bits), Expect = 2.4e-23, Sum P(3) = 2.4e-23
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 165 LMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELMNNEDNMNQFSIHSIDY 224
L+ +++ + DD + + ++ E+C T L N L + N N S +S
Sbjct: 192 LLSYLSKYILLDDFDSLDNLIINEICPITLNQYLLLDNNTLFSLQIFSNQNHPSCYSFGN 251
Query: 225 SK 226
SK
Sbjct: 252 SK 253
Score = 37 (18.1 bits), Expect = 7.7e-23, Sum P(3) = 7.7e-23
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 4 YLFFFPQKSKTTIRFFNRV 22
YL+F QK+K FF +
Sbjct: 480 YLYFQNQKTKELDDFFGDI 498
>UNIPROTKB|A3KGM4 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00645968
SMR:A3KGM4 Ensembl:ENST00000427968 Ensembl:ENST00000458058
Uniprot:A3KGM4
Length = 727
Score = 322 (118.4 bits), Expect = 2.6e-30, Sum P(3) = 2.6e-30
Identities = 70/206 (33%), Positives = 115/206 (55%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 519 LTRVLDLASRLDVLLA--LASAARDYGYSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFV 574
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN + ++TGPN GKS Y++ +G+ F+A +G FVP + A I VD IFTR
Sbjct: 575 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 634
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA 661
+ + +S G+STFM+++ + A + T SLV+IDE G+GT+T DG + ++ R
Sbjct: 635 IHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWL 694
Query: 662 SHRQ--PFTLFATHFHEIALLSRVIP 685
+ P AT+F + L +++P
Sbjct: 695 ARGPTCPHIFVATNFLSLVQL-QLLP 719
Score = 91 (37.1 bits), Expect = 2.6e-30, Sum P(3) = 2.6e-30
Identities = 42/184 (22%), Positives = 76/184 (41%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVN--ILVNNTEARMNLHEYALR 311
SL GIL+RC G +LL W +P DL + R + +L N + LH L
Sbjct: 253 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRL-LG 311
Query: 312 GLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVE-----ASNLNTIL 366
+ ++ + R+ + D +Y+ V L SL Q+++ A + L
Sbjct: 312 HIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDL 371
Query: 367 SSLQSL--KMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNS 424
+ SL K++D + ++ + L + ++ +K +L P F + K +
Sbjct: 372 HHIASLIGKVVDFEGSLAENRFTVLPNIDPEID---EKKRRLMGLPS-FLTEVARKELEN 427
Query: 425 IDDR 428
+D R
Sbjct: 428 LDSR 431
Score = 59 (25.8 bits), Expect = 5.4e-27, Sum P(3) = 5.4e-27
Identities = 45/203 (22%), Positives = 83/203 (40%)
Query: 201 LINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILD 260
+I + L N D M Q + + K V + M H +T S LG+ D
Sbjct: 290 VIQFFLLPQNLD-MAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRD 348
Query: 261 RCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHAAVN--ILVNNTEARMNLHEY 308
CR+ PQ +L +AQ L + +++ E A N ++ N + ++ +
Sbjct: 349 ACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKR 408
Query: 309 ALRGLPDMQSLAMR--IGRKKAGLKDCYRVYEGVSQLPKLISI--LESLVQ--NVEASNL 362
L GLP + R + + + C +Y + + L+SI L S+V+ + E + L
Sbjct: 409 RLMGLPSFLTEVARKELENLDSRIPSCSVIY--IPLIGFLLSIPRLPSMVEASDFEINGL 466
Query: 363 NTILSSLQSLKMMDRKDAVMDKM 385
+ + S + L + +D +
Sbjct: 467 DFMFLSEEKLHYRSARTKELDAL 489
Score = 46 (21.3 bits), Expect = 2.6e-30, Sum P(3) = 2.6e-30
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 84 VLTNT--VGVAIVDL-DTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNK 140
VL N+ +G+A D D+ +M + PD + L+ ++ + +P+ + A+ ++N +
Sbjct: 54 VLWNSGYLGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQ-DENMTR 112
Query: 141 IV 142
+
Sbjct: 113 FL 114
>WB|WBGene00001872 [details] [associations]
symbol:him-14 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0045143 "homologous
chromosome segregation" evidence=IMP] [GO:0051026 "chiasma
assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
EMBL:FO081697 GO:GO:0000239 GO:GO:0008094 GO:GO:0051026
GO:GO:0000712 GO:GO:0045143 GO:GO:0000795 EMBL:AF178755 PIR:E88197
RefSeq:NP_495451.1 UniGene:Cel.22695 ProteinModelPortal:Q23405
SMR:Q23405 STRING:Q23405 PaxDb:Q23405 EnsemblMetazoa:ZK1127.11
GeneID:174157 KEGG:cel:CELE_ZK1127.11 UCSC:ZK1127.11 CTD:174157
WormBase:ZK1127.11 eggNOG:COG0249 GeneTree:ENSGT00550000074897
HOGENOM:HOG000015880 InParanoid:Q23405 KO:K08740 OMA:GFFIQMT
NextBio:882779 GermOnline:ZK1127.11 Gene3D:3.30.420.110
SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 365 (133.5 bits), Expect = 5.1e-30, P = 5.1e-30
Identities = 127/504 (25%), Positives = 223/504 (44%)
Query: 281 DLDAIVER--HAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYE 338
+LD ++ + + V +EA++N + L +Q + + K E
Sbjct: 298 ELDRVIAMCIQTSTSWTVRESEAKINQIIKLMHTLKVIQGIRTLLHSAKMKSNILIEKTE 357
Query: 339 GVSQLPKLISILESLVQNVEASNLNTILSSL--QSLK----------MMDRKDAVMDKMK 386
+ P+ I+ LV+ V+ S L+ +SL Q+ K +D +++
Sbjct: 358 FLKD-PRFDQIMNILVEKVDDSLLDGKKNSLHLQNTKCYAIRHFVAVQLDLARQTYEEII 416
Query: 387 EYLEST-ARRLN--LVADKTIKLENSP-QGFAYRITMKLNNSID-DRYTILDTVRGG--V 439
+E T AR + + +++L S +GF Y + S+ RY LD R V
Sbjct: 417 RNVEETGAREIAEYFHGNSSVRLSFSQSRGFHYTFVTRQAESVTIPRY-FLDVFRNRTTV 475
Query: 440 RFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFS 499
F ++ N + + + E IV ++I L D L+ D L +
Sbjct: 476 TFNSRKVIAYNDRLEQVVAEMFLASDVIVCDMIEEMQPMIPVLYYAMDALSSIDFLCGLA 535
Query: 500 IASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTG 559
S +R KP S ++Q RHPI++ I ND + + F ++TG
Sbjct: 536 TYSD------LRDTCKPTFGPSFSISQGRHPILDWDDSEKTITNDTCL-TRDRRFGIITG 588
Query: 560 PNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEM 619
PNM GKSTY++ +AQIGCF+P + A++ + ++IF+R+G D R S F EM
Sbjct: 589 PNMAGKSTYLKQTAQLAIMAQIGCFIPANYASLPIFNRIFSRMGHNDELIRNKSAFASEM 648
Query: 620 KETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL 679
+ A +++ +NSLV++DEL R TST +G + +I ++ Q +T ATHF +IA
Sbjct: 649 SDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVLK-LQSYTFLATHFLDIAA 707
Query: 680 LSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKS-YGVHCAKMAGYPEDMLEQARDLM 738
L+ N + ++N +++ G YG +++ P++++E A+ L
Sbjct: 708 LANYSNAIDNYHFLP-QTDENSTKKHKLLRGQYRGPLYGFELVELSTIPDEVIEHAQSLA 766
Query: 739 KEYEYSLDTKTPSGDETNNREEEY 762
E +++ D R + Y
Sbjct: 767 TELRANVEDTERDYDSERRRIKVY 790
>UNIPROTKB|Q23405 [details] [associations]
symbol:him-14 "MutS protein homolog him-14" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IMP] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IMP]
[GO:0000239 "pachytene" evidence=IMP] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0051729 GO:GO:0006298
GO:GO:0030983 EMBL:FO081697 GO:GO:0000239 GO:GO:0008094
GO:GO:0051026 GO:GO:0000712 GO:GO:0045143 GO:GO:0000795
EMBL:AF178755 PIR:E88197 RefSeq:NP_495451.1 UniGene:Cel.22695
ProteinModelPortal:Q23405 SMR:Q23405 STRING:Q23405 PaxDb:Q23405
EnsemblMetazoa:ZK1127.11 GeneID:174157 KEGG:cel:CELE_ZK1127.11
UCSC:ZK1127.11 CTD:174157 WormBase:ZK1127.11 eggNOG:COG0249
GeneTree:ENSGT00550000074897 HOGENOM:HOG000015880 InParanoid:Q23405
KO:K08740 OMA:GFFIQMT NextBio:882779 GermOnline:ZK1127.11
Gene3D:3.30.420.110 SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 365 (133.5 bits), Expect = 5.1e-30, P = 5.1e-30
Identities = 127/504 (25%), Positives = 223/504 (44%)
Query: 281 DLDAIVER--HAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYE 338
+LD ++ + + V +EA++N + L +Q + + K E
Sbjct: 298 ELDRVIAMCIQTSTSWTVRESEAKINQIIKLMHTLKVIQGIRTLLHSAKMKSNILIEKTE 357
Query: 339 GVSQLPKLISILESLVQNVEASNLNTILSSL--QSLK----------MMDRKDAVMDKMK 386
+ P+ I+ LV+ V+ S L+ +SL Q+ K +D +++
Sbjct: 358 FLKD-PRFDQIMNILVEKVDDSLLDGKKNSLHLQNTKCYAIRHFVAVQLDLARQTYEEII 416
Query: 387 EYLEST-ARRLN--LVADKTIKLENSP-QGFAYRITMKLNNSID-DRYTILDTVRGG--V 439
+E T AR + + +++L S +GF Y + S+ RY LD R V
Sbjct: 417 RNVEETGAREIAEYFHGNSSVRLSFSQSRGFHYTFVTRQAESVTIPRY-FLDVFRNRTTV 475
Query: 440 RFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFS 499
F ++ N + + + E IV ++I L D L+ D L +
Sbjct: 476 TFNSRKVIAYNDRLEQVVAEMFLASDVIVCDMIEEMQPMIPVLYYAMDALSSIDFLCGLA 535
Query: 500 IASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTG 559
S +R KP S ++Q RHPI++ I ND + + F ++TG
Sbjct: 536 TYSD------LRDTCKPTFGPSFSISQGRHPILDWDDSEKTITNDTCL-TRDRRFGIITG 588
Query: 560 PNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEM 619
PNM GKSTY++ +AQIGCF+P + A++ + ++IF+R+G D R S F EM
Sbjct: 589 PNMAGKSTYLKQTAQLAIMAQIGCFIPANYASLPIFNRIFSRMGHNDELIRNKSAFASEM 648
Query: 620 KETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIAL 679
+ A +++ +NSLV++DEL R TST +G + +I ++ Q +T ATHF +IA
Sbjct: 649 SDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVLK-LQSYTFLATHFLDIAA 707
Query: 680 LSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKS-YGVHCAKMAGYPEDMLEQARDLM 738
L+ N + ++N +++ G YG +++ P++++E A+ L
Sbjct: 708 LANYSNAIDNYHFLP-QTDENSTKKHKLLRGQYRGPLYGFELVELSTIPDEVIEHAQSLA 766
Query: 739 KEYEYSLDTKTPSGDETNNREEEY 762
E +++ D R + Y
Sbjct: 767 TELRANVEDTERDYDSERRRIKVY 790
>UNIPROTKB|A2BEX3 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133
SMR:A2BEX3 Ensembl:ENST00000444225 Uniprot:A2BEX3
Length = 467
Score = 334 (122.6 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 88/279 (31%), Positives = 148/279 (53%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 181 LTRVLDLASRLDVLLA--LASAARDYGYSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFV 236
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN + ++TGPN GKS Y++ +G+ F+A +G FVP + A I VD IFTR
Sbjct: 237 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 296
Query: 602 VGAADSQYRGISTFMMEM-KETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAREL 660
+ + +S G+STFM+++ ++ A + T SLV+IDE G+GT+T DG + ++ R
Sbjct: 297 IHSCESISLGLSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHW 356
Query: 661 ASHRQ--PFTLFATHFHEIALLSRVIPTFRNVQVSALEQ-ED--NLVLLYQVKPGSCVKS 715
+ P AT+F + L +++P VQ +E ED +LV YQV ++S
Sbjct: 357 LARGPTCPHIFVATNFLSLVQL-QLLPQGPLVQYLTMETCEDGNDLVFFYQVS--DLIRS 413
Query: 716 YGVHCAKMAGY-PEDMLEQARDLMKEYEYSLDTKTPSGD 753
G + ++ +E + L+ ++ LD + P+ D
Sbjct: 414 -GKPIKPVKDLLKKNQMENCQTLVDKF-MKLDLEDPNLD 450
Score = 51 (23.0 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 35/153 (22%), Positives = 67/153 (43%)
Query: 251 TYDSLLGILDRCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHAAVN--ILVNN 298
T S LG+ D CR+ PQ +L +AQ L + +++ E A N ++ N
Sbjct: 1 TVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPN 60
Query: 299 TEARMNLHEYALRGLPDMQSLAMR--IGRKKAGLKDCYRVYEGVSQLPKLISI--LESLV 354
+ ++ + L GLP + R + + + C +Y + + L+SI L S+V
Sbjct: 61 IDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIY--IPLIGFLLSIPRLPSMV 118
Query: 355 Q--NVEASNLNTILSSLQSLKMMDRKDAVMDKM 385
+ + E + L+ + S + L + +D +
Sbjct: 119 EASDFEINGLDFMFLSEEKLHYRSARTKELDAL 151
>UNIPROTKB|A3KGM6 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00978527 SMR:A3KGM6 Ensembl:ENST00000416819 Uniprot:A3KGM6
Length = 728
Score = 314 (115.6 bits), Expect = 2.2e-29, Sum P(3) = 2.2e-29
Identities = 70/207 (33%), Positives = 116/207 (56%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 519 LTRVLDLASRLDVLLA--LASAARDYGYSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFV 574
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN + ++TGPN GKS Y++ +G+ F+A +G FVP + A I VD IFTR
Sbjct: 575 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 634
Query: 602 VGAADSQYRGISTFMMEM-KETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAREL 660
+ + +S G+STFM+++ ++ A + T SLV+IDE G+GT+T DG + ++ R
Sbjct: 635 IHSCESISLGLSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHW 694
Query: 661 ASHRQ--PFTLFATHFHEIALLSRVIP 685
+ P AT+F + L +++P
Sbjct: 695 LARGPTCPHIFVATNFLSLVQL-QLLP 720
Score = 91 (37.1 bits), Expect = 2.2e-29, Sum P(3) = 2.2e-29
Identities = 42/184 (22%), Positives = 76/184 (41%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVN--ILVNNTEARMNLHEYALR 311
SL GIL+RC G +LL W +P DL + R + +L N + LH L
Sbjct: 253 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRL-LG 311
Query: 312 GLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVE-----ASNLNTIL 366
+ ++ + R+ + D +Y+ V L SL Q+++ A + L
Sbjct: 312 HIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDL 371
Query: 367 SSLQSL--KMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNS 424
+ SL K++D + ++ + L + ++ +K +L P F + K +
Sbjct: 372 HHIASLIGKVVDFEGSLAENRFTVLPNIDPEID---EKKRRLMGLPS-FLTEVARKELEN 427
Query: 425 IDDR 428
+D R
Sbjct: 428 LDSR 431
Score = 59 (25.8 bits), Expect = 4.4e-26, Sum P(3) = 4.4e-26
Identities = 45/203 (22%), Positives = 83/203 (40%)
Query: 201 LINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILD 260
+I + L N D M Q + + K V + M H +T S LG+ D
Sbjct: 290 VIQFFLLPQNLD-MAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRD 348
Query: 261 RCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHAAVN--ILVNNTEARMNLHEY 308
CR+ PQ +L +AQ L + +++ E A N ++ N + ++ +
Sbjct: 349 ACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKR 408
Query: 309 ALRGLPDMQSLAMR--IGRKKAGLKDCYRVYEGVSQLPKLISI--LESLVQ--NVEASNL 362
L GLP + R + + + C +Y + + L+SI L S+V+ + E + L
Sbjct: 409 RLMGLPSFLTEVARKELENLDSRIPSCSVIY--IPLIGFLLSIPRLPSMVEASDFEINGL 466
Query: 363 NTILSSLQSLKMMDRKDAVMDKM 385
+ + S + L + +D +
Sbjct: 467 DFMFLSEEKLHYRSARTKELDAL 489
Score = 46 (21.3 bits), Expect = 2.2e-29, Sum P(3) = 2.2e-29
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 84 VLTNT--VGVAIVDL-DTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNK 140
VL N+ +G+A D D+ +M + PD + L+ ++ + +P+ + A+ ++N +
Sbjct: 54 VLWNSGYLGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQ-DENMTR 112
Query: 141 IV 142
+
Sbjct: 113 FL 114
>UNIPROTKB|A3KGM5 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00893328 SMR:A3KGM5 Ensembl:ENST00000457917 Uniprot:A3KGM5
Length = 745
Score = 314 (115.6 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 70/207 (33%), Positives = 116/207 (56%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 536 LTRVLDLASRLDVLLA--LASAARDYGYSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFV 591
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN + ++TGPN GKS Y++ +G+ F+A +G FVP + A I VD IFTR
Sbjct: 592 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 651
Query: 602 VGAADSQYRGISTFMMEM-KETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAREL 660
+ + +S G+STFM+++ ++ A + T SLV+IDE G+GT+T DG + ++ R
Sbjct: 652 IHSCESISLGLSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHW 711
Query: 661 ASHRQ--PFTLFATHFHEIALLSRVIP 685
+ P AT+F + L +++P
Sbjct: 712 LARGPTCPHIFVATNFLSLVQL-QLLP 737
Score = 91 (37.1 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 42/184 (22%), Positives = 76/184 (41%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVN--ILVNNTEARMNLHEYALR 311
SL GIL+RC G +LL W +P DL + R + +L N + LH L
Sbjct: 270 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRL-LG 328
Query: 312 GLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVE-----ASNLNTIL 366
+ ++ + R+ + D +Y+ V L SL Q+++ A + L
Sbjct: 329 HIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDL 388
Query: 367 SSLQSL--KMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNS 424
+ SL K++D + ++ + L + ++ +K +L P F + K +
Sbjct: 389 HHIASLIGKVVDFEGSLAENRFTVLPNIDPEID---EKKRRLMGLPS-FLTEVARKELEN 444
Query: 425 IDDR 428
+D R
Sbjct: 445 LDSR 448
Score = 59 (25.8 bits), Expect = 5.2e-26, Sum P(3) = 5.2e-26
Identities = 45/203 (22%), Positives = 83/203 (40%)
Query: 201 LINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILD 260
+I + L N D M Q + + K V + M H +T S LG+ D
Sbjct: 307 VIQFFLLPQNLD-MAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRD 365
Query: 261 RCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHAAVN--ILVNNTEARMNLHEY 308
CR+ PQ +L +AQ L + +++ E A N ++ N + ++ +
Sbjct: 366 ACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKR 425
Query: 309 ALRGLPDMQSLAMR--IGRKKAGLKDCYRVYEGVSQLPKLISI--LESLVQ--NVEASNL 362
L GLP + R + + + C +Y + + L+SI L S+V+ + E + L
Sbjct: 426 RLMGLPSFLTEVARKELENLDSRIPSCSVIY--IPLIGFLLSIPRLPSMVEASDFEINGL 483
Query: 363 NTILSSLQSLKMMDRKDAVMDKM 385
+ + S + L + +D +
Sbjct: 484 DFMFLSEEKLHYRSARTKELDAL 506
Score = 46 (21.3 bits), Expect = 2.6e-29, Sum P(3) = 2.6e-29
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 84 VLTNT--VGVAIVDL-DTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNK 140
VL N+ +G+A D D+ +M + PD + L+ ++ + +P+ + A+ ++N +
Sbjct: 54 VLWNSGYLGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQ-DENMTR 112
Query: 141 IV 142
+
Sbjct: 113 FL 114
>UNIPROTKB|E9PGY4 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 HGNC:HGNC:7328
HGNC:HGNC:41994 IPI:IPI00790547 SMR:E9PGY4 Ensembl:ENST00000548094
Ensembl:ENST00000549604 Ensembl:ENST00000549746 Uniprot:E9PGY4
Length = 271
Score = 322 (118.4 bits), Expect = 6.3e-28, P = 6.3e-28
Identities = 70/206 (33%), Positives = 115/206 (55%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 51 LTRVLDLASRLDVLLA--LASAARDYGYSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFV 106
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN + ++TGPN GKS Y++ +G+ F+A +G FVP + A I VD IFTR
Sbjct: 107 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 166
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA 661
+ + +S G+STFM+++ + A + T SLV+IDE G+GT+T DG + ++ R
Sbjct: 167 IHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWL 226
Query: 662 SHRQ--PFTLFATHFHEIALLSRVIP 685
+ P AT+F + L +++P
Sbjct: 227 ARGPTCPHIFVATNFLSLVQL-QLLP 251
>UNIPROTKB|H0YF11 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 GO:GO:0030983
EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR759915
EMBL:CR925765 EMBL:BX248133 HGNC:HGNC:41994 Ensembl:ENST00000469011
Ensembl:ENST00000476578 Ensembl:ENST00000480622
Ensembl:ENST00000482009 Ensembl:ENST00000492776
Ensembl:ENST00000498473 Uniprot:H0YF11
Length = 264
Score = 322 (118.4 bits), Expect = 6.3e-28, P = 6.3e-28
Identities = 70/206 (33%), Positives = 115/206 (55%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 44 LTRVLDLASRLDVLLA--LASAARDYGYSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFV 99
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN + ++TGPN GKS Y++ +G+ F+A +G FVP + A I VD IFTR
Sbjct: 100 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 159
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA 661
+ + +S G+STFM+++ + A + T SLV+IDE G+GT+T DG + ++ R
Sbjct: 160 IHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWL 219
Query: 662 SHRQ--PFTLFATHFHEIALLSRVIP 685
+ P AT+F + L +++P
Sbjct: 220 ARGPTCPHIFVATNFLSLVQL-QLLP 244
>UNIPROTKB|Q9UFG2 [details] [associations]
symbol:DKFZp434C1615 "Putative uncharacterized protein
DKFZp434C1615" species:9606 "Homo sapiens" [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 EMBL:BX248244 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 HSSP:Q56215 UniGene:Hs.647011
HGNC:HGNC:7328 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AL122094
IPI:IPI00945579 PIR:T34526 STRING:Q9UFG2 Ensembl:ENST00000554793
HOVERGEN:HBG066397 Uniprot:Q9UFG2
Length = 263
Score = 322 (118.4 bits), Expect = 6.3e-28, P = 6.3e-28
Identities = 70/206 (33%), Positives = 115/206 (55%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 43 LTRVLDLASRLDVLLA--LASAARDYGYSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFV 98
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 601
PN + ++TGPN GKS Y++ +G+ F+A +G FVP + A I VD IFTR
Sbjct: 99 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 158
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA 661
+ + +S G+STFM+++ + A + T SLV+IDE G+GT+T DG + ++ R
Sbjct: 159 IHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWL 218
Query: 662 SHRQ--PFTLFATHFHEIALLSRVIP 685
+ P AT+F + L +++P
Sbjct: 219 ARGPTCPHIFVATNFLSLVQL-QLLP 243
>SGD|S000001891 [details] [associations]
symbol:MSH4 "Protein involved in meiotic recombination"
species:4932 "Saccharomyces cerevisiae" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;IPI]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983 "mismatched
DNA binding" evidence=IEA;IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IRD]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001891 GO:GO:0005524 EMBL:D50617
EMBL:BK006940 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U13999
PIR:A55201 RefSeq:NP_116652.1 ProteinModelPortal:P40965 SMR:P40965
DIP:DIP-2426N IntAct:P40965 MINT:MINT-565232 STRING:P40965
EnsemblFungi:YFL003C GeneID:850545 KEGG:sce:YFL003C
HOGENOM:HOG000094365 OMA:MSGKSVY OrthoDB:EOG4VHPFT NextBio:966313
Genevestigator:P40965 GermOnline:YFL003C Uniprot:P40965
Length = 878
Score = 317 (116.6 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 164/730 (22%), Positives = 316/730 (43%)
Query: 116 EAIIVQKSPKECL-----LPA--EYL-NDNKN--KIVTILDRNKVCMTGRKKNEFSEEDL 165
E + +++ ++C L A +YL +D K KI I+D+ + EE +
Sbjct: 182 ETVKIEEGSRKCFNSQDGLAAITKYLMDDTKKDLKIEEIIDKTFALCAASAAISYMEEII 241
Query: 166 MQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELMNNEDNMNQFSIHSIDYS 225
+ L F ++ M + + T + LEL+ N+ + N S+
Sbjct: 242 SKSSRNLNAFRKLRIQFEGTENTMLIDSKT------VRGLELVENKLDKNGISLW----- 290
Query: 226 KYVHMSSAVMS--SLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLD 283
K++ +S M SL Q T + + L L+ + + + L DLD
Sbjct: 291 KFLDTTSTKMGQRSLRNSILQPLTDRGSIEMRLEALEELKANDDLLQKLRLEMKSLPDLD 350
Query: 284 AIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAG---LKDCYRVY--E 338
+ R +N + R+N L ++SL + + + + +++ +
Sbjct: 351 KLFSRLLCINHSAIKPDQRINYVLLLKETLQSVKSLKDALNDQLIQSRLISETKKIFNND 410
Query: 339 GVSQLPKLISILESLVQN--VEASNLNTILSSLQSLKMMDRKDAVMDKM----KEYLEST 392
+ ++ KLI+ S + V AS+ +L+ +S + + ++D KE E
Sbjct: 411 AIMEIEKLIN---SCINEDCVWASSAIQLLNQ-RSYAVKSDSNGLLDVSRQIYKEVKEEF 466
Query: 393 ARRL-NLVADKTIKLEN---SPQGFAYRITMKLNNSIDDRYTILD-----TVRGG-VRFQ 442
R + +L A I L++ S +GF RI K DD T+ D T++ +
Sbjct: 467 FREVEDLTAKNKINLDHNYDSARGFYLRI--KRQEFTDDVATLPDVFISRTIKKNYIECT 524
Query: 443 DDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIAS 502
+ N + + + E + V+E++ A + L +++ +A D++ SF+
Sbjct: 525 TLNIIKKNARLKEVMEEILLLSEETVDELLDKIATHISELFMIAEAVAILDLVCSFTY-- 582
Query: 503 TCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNM 562
Y P T +L++ RHP++E + +++PN + S ++TG NM
Sbjct: 583 NLKENNYTIPIF----TNNLLIRDSRHPLLE-KVLKNFVPNTISSTKHSSSLQIITGCNM 637
Query: 563 GGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKET 622
GKS Y++ + + +AQ+G +P + V ++ RV DS S F EMKE
Sbjct: 638 SGKSVYLKQVALICIMAQMGSGIPALYGSFPVFKRLHARV-CNDSMELTSSNFGFEMKEM 696
Query: 623 ATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLF-ATHFHEIALLS 681
A + +L+I+DELGRG+S DGF ++ ++ L R T+F +THF +I +
Sbjct: 697 AYFLDDINTETLLILDELGRGSSIADGFCVSLAVTEHLL--RTEATVFLSTHFQDIPKIM 754
Query: 682 RVIPTFRNVQVSALEQEDNLVLL-YQVKPGS-CVKSYGVHCAKMAGYPEDMLEQARDLMK 739
P ++ + A+ DN V + YQ+ S +++ G+ K P D++ +A ++
Sbjct: 755 SKKPAVSHLHMDAVLLNDNSVKMNYQLTQKSVAIENSGIRVVKKIFNP-DIIAEAYNIHS 813
Query: 740 EYEYSLDTKTPSGDETNNREEEYFKTVQEGE--YQMFDFLQQCLSLSKQKDTNRILHLQE 797
+ + +T + D +N ++ KT+ + + + + L++C K+ T + L+E
Sbjct: 814 LLKIA-KARTENED-SNGVVDQ--KTINQMKRIHNLVAILKECAGNEKEPLT--LGKLKE 867
Query: 798 TQEPGIEEYQ 807
IE ++
Sbjct: 868 INSDFIENFE 877
Score = 155 (59.6 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 94/397 (23%), Positives = 169/397 (42%)
Query: 43 YLVK-TMGQKDKT-LETVLVNKSNLS-CFSHILCVISEDKTLETVLTNTVGVAIVDLDTK 99
YL+ +M + T L N S L +LC I E + ++ +G+ I++ +T
Sbjct: 74 YLMTGSMASRTATSLSRYSTNASLLGPSIDCVLCCIYE---VPRDISTRIGLCIINCNTG 130
Query: 100 KFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMT-----G 154
+ Y+ + D Y + + P E L+P+ L +K+ T++ N V T G
Sbjct: 131 QMYLSDFMDSQIYIRVVHKLQIYQPTEILIPSSSLAPTVSKLATMIKFN-VAETVKIEEG 189
Query: 155 RKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSL-INYLE--LMNNE 211
+K F+ +D + + + + DD++ K+ ++ E+ T C S I+Y+E + +
Sbjct: 190 SRKC-FNSQDGLAAITKYL-MDDTK-KDLKI-EEIIDKTFALCAASAAISYMEEIISKSS 245
Query: 212 DNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLL 271
N+N F I + + ++ L + + SL LD T G R L
Sbjct: 246 RNLNAFRKLRIQFEGTENTMLIDSKTVRGLELVENKLDKNGISLWKFLDTTSTKMGQRSL 305
Query: 272 AQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRI-GRKKAGL 330
+ QPL D +I R A+ L N + L ++ LPD+ L R+ + +
Sbjct: 306 RNSILQPLTDRGSIEMRLEALEELKANDDLLQKLR-LEMKSLPDLDKLFSRLLCINHSAI 364
Query: 331 KDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQS-LKMMDRKDAVMDKMKEYL 389
K R+ V L + + ++SL +A N I S L S K + DA+M+ +++ +
Sbjct: 365 KPDQRI-NYVLLLKETLQSVKSLK---DALNDQLIQSRLISETKKIFNNDAIME-IEKLI 419
Query: 390 ESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSID 426
S + A I+L N +Y + N +D
Sbjct: 420 NSCINEDCVWASSAIQLLNQR---SYAVKSDSNGLLD 453
>UNIPROTKB|Q0DJI9 [details] [associations]
symbol:Os05g0274200 "Os05g0274200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005886 GO:GO:0005524
GO:GO:0003684 EMBL:AP008211 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0008094
GO:GO:0006311 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 KO:K08735 ProtClustDB:CLSN2680872
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:NP_001055070.2
UniGene:Os.18121 STRING:Q0DJI9 EnsemblPlants:LOC_Os05g19270.1
GeneID:4338271 KEGG:osa:4338271 Gramene:Q0DJI9 Uniprot:Q0DJI9
Length = 113
Score = 283 (104.7 bits), Expect = 9.7e-24, P = 9.7e-24
Identities = 53/80 (66%), Positives = 66/80 (82%)
Query: 572 IGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTE 631
+GV+V +AQ+G FVPCD A+ISV D IF RVGA D Q RG+STFM EM ETA+++K ++
Sbjct: 16 VGVNVLMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGASD 75
Query: 632 NSLVIIDELGRGTSTFDGFG 651
SL+IIDELGRGTST+DGFG
Sbjct: 76 KSLIIIDELGRGTSTYDGFG 95
>UNIPROTKB|Q720J7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:265669 "Listeria
monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_013840.1 ProteinModelPortal:Q720J7 STRING:Q720J7
GeneID:2799326 KEGG:lmf:LMOf2365_1241 PATRIC:20323712
Uniprot:Q720J7
Length = 785
Score = 304 (112.1 bits), Expect = 2.0e-23, P = 2.0e-23
Identities = 114/462 (24%), Positives = 214/462 (46%)
Query: 342 QLPKLISILESLVQNVEASN--LNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLN-- 397
+L L + E + +V+ S L+T +L +++ R+ D+++E LES R N
Sbjct: 125 ELLVLKEVEEDIAISVDESGKVLDTASEALSTIRRTLRRTE--DRVREKLESYLRDRNAS 182
Query: 398 -LVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILD-TVRGGVRF-QDDRLATANTQYQ 454
+++D I + N Y I +K + D + G F + + N + +
Sbjct: 183 KMLSDAVITIRND----RYVIPVKQEYKGHYGGIVHDQSASGQTLFIEPQSVVDLNNERK 238
Query: 455 AIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCM 514
A+Q + + + I+ E+ A + ++ + +L +FD + F+ A V P +
Sbjct: 239 ALQAKEKQEIERILAEISASLAAWINEIHHNTFILGRFDFI--FAKARFGKAMKAVTPHL 296
Query: 515 KPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 574
G L+ RHP+++ + ND+Y + ++TGPN GGK+ ++++G+
Sbjct: 297 SDAGVVHLIA--ARHPLLD---AAKVVANDIYLGEDFTTI-VITGPNTGGKTITLKTLGL 350
Query: 575 SVFLAQIGCFVPC-DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENS 633
+AQ G +P + +TI+V + +F +G S + +STF M +++ + S
Sbjct: 351 LTLMAQSGLQIPAQEDSTIAVFEHVFADIGDEQSIEQSLSTFSSHMTNIVSILGNVNQKS 410
Query: 634 LVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFAT-HFHEIALL--SRVIPTFRNV 690
L++ DELG GT +G +A +I ASH + ++ AT H+ E+ +RV T +V
Sbjct: 411 LILYDELGAGTDPQEGAALAIAILD--ASHAKGASVVATTHYPELKAYGYNRVHATNASV 468
Query: 691 QVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTP 750
+ + LL V PG +S ++ G E+++ +AR L+ L+
Sbjct: 469 EFNVETLSPTYKLLIGV-PG---RSNAFDISRRLGLSENIITEARSLVDTESADLNDMIS 524
Query: 751 SGDETNNREEEYFKTVQE---GEYQMFDFLQQCLS-LSKQKD 788
S +E N E ++ +E G + LQ+ +S +QKD
Sbjct: 525 SLEEKRNLAETEYEEARELARGAGNLLKDLQKEISNYYQQKD 566
>SGD|S000002313 [details] [associations]
symbol:MSH5 "Protein of the MutS family" species:4932
"Saccharomyces cerevisiae" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IEA;IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0003674 "molecular_function"
evidence=ND] [GO:0006298 "mismatch repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002313
GO:GO:0005524 EMBL:BK006938 GO:GO:0006298 GO:GO:0030983 EMBL:X97751
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741
GeneTree:ENSGT00550000074977 EMBL:L42517 EMBL:Z74202 PIR:S67702
RefSeq:NP_010127.1 ProteinModelPortal:Q12175 DIP:DIP-1457N
IntAct:Q12175 MINT:MINT-388063 STRING:Q12175 PRIDE:Q12175
EnsemblFungi:YDL154W GeneID:851401 KEGG:sce:YDL154W CYGD:YDL154w
HOGENOM:HOG000113662 OMA:SAFMIDL OrthoDB:EOG4W6S4H NextBio:968570
Genevestigator:Q12175 GermOnline:YDL154W Uniprot:Q12175
Length = 901
Score = 281 (104.0 bits), Expect = 9.3e-23, Sum P(2) = 9.3e-23
Identities = 102/348 (29%), Positives = 173/348 (49%)
Query: 479 TQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGV 538
TQ L + +L++ ++L+SF A A + Y P + ++N RH + E
Sbjct: 557 TQ-LTAYNILLSELEILLSF--AQVSAERNYAEPQLVEDECILEIING-RHALYETFLD- 611
Query: 539 SYIPNDVYFKSG---EVSF---N-----LVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC 587
+YIPN G E+S+ N +VTG N GKS Y+ G+ V+LAQIGCFVP
Sbjct: 612 NYIPNSTMIDGGLFSELSWCEQNKGRIIVVTGANASGKSVYLTQNGLIVYLAQIGCFVPA 671
Query: 588 DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTF 647
+ A I + D+I TR+ ++ Y+ S+F+++ ++ A + TE SL++IDE G+GT
Sbjct: 672 ERARIGIADKILTRIRTQETVYKTQSSFLLDSQQMAKSLSLATEKSLILIDEYGKGTDIL 731
Query: 648 DGFGMACSIARELA-SHRQPFTLFATHFHEIA---LLSRVIPTFRNVQVSAL-EQEDNLV 702
DG + SI ++ S + P + THFHE+ +L+ I ++ L Q+ NL+
Sbjct: 732 DGPSLFGSIMLNMSKSEKCPRIIACTHFHELFNENVLTENIKGIKHYCTDILISQKYNLL 791
Query: 703 LLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETNNREEEY 762
V G +S G+ + E + +Q+ + Y S D R EE
Sbjct: 792 ETAHV--GEDHESEGI--TFLFKVKEGISKQSFGI-----YCAKVCGLSRDIVE-RAEEL 841
Query: 763 FKTVQEGEYQMFDFLQQCLSLSKQKDTNRILHLQETQEPGIEEYQSFD 810
+ + G+ D +QQC +L++++ + Q+ QE ++++ S+D
Sbjct: 842 SRMINRGD----DVVQQCGNLTEKE----MREFQKNQEI-VKKFLSWD 880
Score = 69 (29.3 bits), Expect = 9.3e-23, Sum P(2) = 9.3e-23
Identities = 36/176 (20%), Positives = 80/176 (45%)
Query: 219 IHSIDYSKYVHMSSAVMSSLHVLP---QQGSTSAQT--YDSLLGILDRCRTPQGHRLLAQ 273
I ID + + +S+LH+ P + G + S+ + ++ + R+L
Sbjct: 238 IRYIDIRDRMVLDENTISALHIFPTAHKLGHDKMMRNGFFSVFELFNQVSSDYARRILKS 297
Query: 274 WMKQPLKDLDAIVERHAAVNILVNNTEARM--NLHEYALRGLPDMQSLAMRIGRKKAGLK 331
W+ PL + I R++ + L++ A + +L + +++ PD ++ K+ L
Sbjct: 298 WLINPLTNKKRIETRYSIIRTLLDKQNAIIFSDLSQ-SIKRCPDAFGFINQLRSGKSTLG 356
Query: 332 DCYRVYEGVSQLPKLISILESL-VQNVEASNLNTILSS--LQSLKMMDRK-DAVMD 383
+V + + + ++ SL + + EA+ L+ I + + +LK RK + V+D
Sbjct: 357 TWSKVASFLEKGIAIFQLVSSLKLGSDEANILHDIKNKVDISALKECLRKVETVID 412
>UNIPROTKB|Q7SCW0 [details] [associations]
symbol:NCU09384 "Predicted protein" species:367110
"Neurospora crassa OR74A" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 HSSP:Q56215 KO:K08741
OrthoDB:EOG4W6S4H EMBL:AABX02000082 RefSeq:XP_963830.1
ProteinModelPortal:Q7SCW0 STRING:Q7SCW0
EnsemblFungi:EFNCRT00000009472 GeneID:3879979 KEGG:ncr:NCU09384
OMA:INVICER Uniprot:Q7SCW0
Length = 506
Score = 288 (106.4 bits), Expect = 3.3e-22, P = 3.3e-22
Identities = 94/353 (26%), Positives = 169/353 (47%)
Query: 441 FQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSI 500
+++ + + Y + E + ++ E+ G + + L + +VL + D L++ +
Sbjct: 108 YKNRTMVELDDMYGDLTEEIADEEIEVIVELAGAVSEHEDALIRALEVLGELDSLLALAF 167
Query: 501 AST----CAPKPYVRPCMKPMGTGSLVLNQCRHP-IVE----LQGG-VSYIPNDVYF--- 547
A+ APK + G G L + P + L+GG S N++ F
Sbjct: 168 AAEKYNWAAPKMTSENIIDIEG-GRHPLQELLVPSFIPNDCILRGGCASENGNEIDFVGV 226
Query: 548 --KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAA 605
+ E S ++TGPN GKS Y++ + + ++LA IG +VP ATI V D+IFTRV
Sbjct: 227 KDEPKEPSALVLTGPNNSGKSIYMKQVALIIYLAHIGSYVPVTRATIGVTDRIFTRVATR 286
Query: 606 DSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAR---ELAS 662
++ S FM ++K+ A I T SL++ DE G+GT+ G + + EL +
Sbjct: 287 ETAMDDESAFMTDLKQAAFSINFATRRSLILADEFGKGTTMEAGAAVFTAYLHHFLELDA 346
Query: 663 HRQPFTLFATHFHEIALLSRVIP----TFRNVQV----SALEQEDNLVLLYQVKPGSCVK 714
R P L +THFH++ + P + +++V A E+E+++ LY++ G
Sbjct: 347 DR-PRMLVSTHFHDVFNRGFLKPEEGVAYAHMEVRLNPEAEEREEHITYLYRLVHGRAEH 405
Query: 715 SYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETNNREEEYFKTVQ 767
S G+ CA + +D+L++A D++ E D + ++ + E FK +
Sbjct: 406 SLGLMCAAINHIEDDVLKRAGDILGMLERDEDIEAVFASPSHE-DIEAFKAAE 457
>UNIPROTKB|Q3ABU1 [details] [associations]
symbol:mutS2 "MutS2 protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR003593
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382 SMART:SM00533
SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524
GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0006298 GO:GO:0017111 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456
OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 287 (106.1 bits), Expect = 1.4e-21, P = 1.4e-21
Identities = 114/476 (23%), Positives = 212/476 (44%)
Query: 340 VSQLPKLISILESLVQNVEASNL--NTILSSLQ-SLKMMDRKDA-VMDKMKEYLESTARR 395
+ Q+ KL+ E+LV+++E S T+ LK + + A + DKM+E +E +
Sbjct: 113 LKQIVKLLFFDEALVKDIERSFWPEGTVKDEASPELKRIRGQIARLKDKMREAVEKYLKE 172
Query: 396 LNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQA 455
L L S +G + + +K + I D G + + +
Sbjct: 173 PELAKYLQEPLI-SVRGDRFVLPVKASYKSQVPGIIHDRSNTGQTLFIEPYSAVEAGNEL 231
Query: 456 IQREYETHQQSIVEEVIGISAGYTQTLN-QLSDVLAQFDVLVSFSIASTCAPKPYVRPCM 514
+ E ++ I+E+++ +TQ L L+++ +++L + A
Sbjct: 232 --KTLELQEKEIIEKIL---KDFTQRLACNLTEIKRTYELLGEIDLIVAKARLALELDAY 286
Query: 515 KPM--GTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 572
KP G L Q RHP++ G +P D+ E ++TGPN GGK+ +++I
Sbjct: 287 KPRISENGVLSFKQARHPLL----GKKAVPFDLTLGK-EFDLLIITGPNTGGKTVTLKTI 341
Query: 573 GVSVFLAQIGCFVPCDSAT-ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTE 631
G+ +A+ G F+P T I + +++ +G S + +STF + +++ E
Sbjct: 342 GILTIMARAGLFIPASPETEIGLFGEVYVDIGDEQSIVQSLSTFSSHLLNLKFILENARE 401
Query: 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQ 691
LV++DELG GT +G +A +I EL + + TH E+A + I T R
Sbjct: 402 GDLVLLDELGTGTDPREGAALAKAILEELRGKKVK-VVATTHTSELAAYA--IETERVEN 458
Query: 692 VSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPS 751
S ++L Y++ G +S ++ A+ G E ++E+A+ +KE E LD K
Sbjct: 459 ASVEFDPESLKPTYRLHIGKPGRSNALYIAQGLGLKEQIIEKAKSFLKEEELKLD-KLIF 517
Query: 752 GDETNNREEEYFKTVQEGEYQMFDFLQQCLSLSKQKDTNRILHLQETQEPGIEEYQ 807
E R+ E K +E + ++ L+ + + +L++T+E I +Y+
Sbjct: 518 DVEQEKRQLE--KAKEEVANLLISLKEKEAKLNDELE-----NLEKTKEEIIRKYR 566
>TIGR_CMR|CHY_1564 [details] [associations]
symbol:CHY_1564 "DNA mismatch repair protein MutS"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003684 GO:GO:0006281 GO:GO:0006298 GO:GO:0017111
GO:GO:0030983 SMART:SM00463 PROSITE:PS50828 GO:GO:0045005
SUPFAM:SSF48334 HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 287 (106.1 bits), Expect = 1.4e-21, P = 1.4e-21
Identities = 114/476 (23%), Positives = 212/476 (44%)
Query: 340 VSQLPKLISILESLVQNVEASNL--NTILSSLQ-SLKMMDRKDA-VMDKMKEYLESTARR 395
+ Q+ KL+ E+LV+++E S T+ LK + + A + DKM+E +E +
Sbjct: 113 LKQIVKLLFFDEALVKDIERSFWPEGTVKDEASPELKRIRGQIARLKDKMREAVEKYLKE 172
Query: 396 LNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQA 455
L L S +G + + +K + I D G + + +
Sbjct: 173 PELAKYLQEPLI-SVRGDRFVLPVKASYKSQVPGIIHDRSNTGQTLFIEPYSAVEAGNEL 231
Query: 456 IQREYETHQQSIVEEVIGISAGYTQTLN-QLSDVLAQFDVLVSFSIASTCAPKPYVRPCM 514
+ E ++ I+E+++ +TQ L L+++ +++L + A
Sbjct: 232 --KTLELQEKEIIEKIL---KDFTQRLACNLTEIKRTYELLGEIDLIVAKARLALELDAY 286
Query: 515 KPM--GTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 572
KP G L Q RHP++ G +P D+ E ++TGPN GGK+ +++I
Sbjct: 287 KPRISENGVLSFKQARHPLL----GKKAVPFDLTLGK-EFDLLIITGPNTGGKTVTLKTI 341
Query: 573 GVSVFLAQIGCFVPCDSAT-ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTE 631
G+ +A+ G F+P T I + +++ +G S + +STF + +++ E
Sbjct: 342 GILTIMARAGLFIPASPETEIGLFGEVYVDIGDEQSIVQSLSTFSSHLLNLKFILENARE 401
Query: 632 NSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQ 691
LV++DELG GT +G +A +I EL + + TH E+A + I T R
Sbjct: 402 GDLVLLDELGTGTDPREGAALAKAILEELRGKKVK-VVATTHTSELAAYA--IETERVEN 458
Query: 692 VSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPS 751
S ++L Y++ G +S ++ A+ G E ++E+A+ +KE E LD K
Sbjct: 459 ASVEFDPESLKPTYRLHIGKPGRSNALYIAQGLGLKEQIIEKAKSFLKEEELKLD-KLIF 517
Query: 752 GDETNNREEEYFKTVQEGEYQMFDFLQQCLSLSKQKDTNRILHLQETQEPGIEEYQ 807
E R+ E K +E + ++ L+ + + +L++T+E I +Y+
Sbjct: 518 DVEQEKRQLE--KAKEEVANLLISLKEKEAKLNDELE-----NLEKTKEEIIRKYR 566
>UNIPROTKB|Q81YJ6 [details] [associations]
symbol:BAS3289 "Putative MutS family protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000432 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 278 (102.9 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 104/431 (24%), Positives = 203/431 (47%)
Query: 348 SILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLE 407
SI E + +++ +++++ S + ++ + D+V K+KE L + LN A+K E
Sbjct: 128 SIEEEINFSIKGNSIDSAASK-ELKRIRNNIDSVDGKIKERL---TKFLNSSANKKYIQE 183
Query: 408 N--SPQGFAYRITMKLNNSIDDRYTILD-TVRGGVRFQDDRLATA-NTQYQAIQREYETH 463
S + Y I +K + +I++ + +G F + T N + +++ E
Sbjct: 184 FFISKKDDRYTIPIKSSYKNQVAGSIVEASAKGSTVFIEPHTVTKLNAELASLKAEEAME 243
Query: 464 QQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLV 523
+ I+ + G+ + ++++Q+D++ F+ A + P + G LV
Sbjct: 244 EYQILATLSGMVVENIYHIKINMELISQYDMV--FAKAKFSKSIDGIEPKLNDHGHIHLV 301
Query: 524 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLV-TGPNMGGKSTYIRSIGVSVFLAQIG 582
C+HP+ L G V +P + F+ G+ +L+ TGPN GGK+ +++IG+ G
Sbjct: 302 --NCKHPL--LSGKV--VP--LNFEIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSG 353
Query: 583 CFVPCDSAT-ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELG 641
+ D T I++ + +F +G S +STF MK + +++ N+L++ DE+G
Sbjct: 354 LHIAGDKETEIAIFENVFVDIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIG 413
Query: 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNL 701
GT +G +A SI E T+ +TH+ EI S + F N + + L
Sbjct: 414 SGTEPNEGAALAISILEEFYL-AGCITVASTHYGEIKRFSEMHDDFMNAAMQF--NSETL 470
Query: 702 VLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETNNREEE 761
LY++ G +S + A E +L++A+ M EY+L+ K +E+ R+ +
Sbjct: 471 EPLYKLVIGKSGESNALWIANKMNVRERVLKRAKAYMGNKEYTLE-KV---NESKIRKPK 526
Query: 762 YFKTVQEGEYQ 772
+ + +E Y+
Sbjct: 527 FLQEKRENHYE 537
Score = 46 (21.3 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 22 VEFYCVHGEDAELIQR 37
V+FYCV G ELI +
Sbjct: 18 VKFYCVSGLGKELINK 33
>TIGR_CMR|BA_3547 [details] [associations]
symbol:BA_3547 "MutS family protein, putative"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0006259 "DNA metabolic
process" evidence=ISS] InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 278 (102.9 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 104/431 (24%), Positives = 203/431 (47%)
Query: 348 SILESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLE 407
SI E + +++ +++++ S + ++ + D+V K+KE L + LN A+K E
Sbjct: 128 SIEEEINFSIKGNSIDSAASK-ELKRIRNNIDSVDGKIKERL---TKFLNSSANKKYIQE 183
Query: 408 N--SPQGFAYRITMKLNNSIDDRYTILD-TVRGGVRFQDDRLATA-NTQYQAIQREYETH 463
S + Y I +K + +I++ + +G F + T N + +++ E
Sbjct: 184 FFISKKDDRYTIPIKSSYKNQVAGSIVEASAKGSTVFIEPHTVTKLNAELASLKAEEAME 243
Query: 464 QQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLV 523
+ I+ + G+ + ++++Q+D++ F+ A + P + G LV
Sbjct: 244 EYQILATLSGMVVENIYHIKINMELISQYDMV--FAKAKFSKSIDGIEPKLNDHGHIHLV 301
Query: 524 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLV-TGPNMGGKSTYIRSIGVSVFLAQIG 582
C+HP+ L G V +P + F+ G+ +L+ TGPN GGK+ +++IG+ G
Sbjct: 302 --NCKHPL--LSGKV--VP--LNFEIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSG 353
Query: 583 CFVPCDSAT-ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELG 641
+ D T I++ + +F +G S +STF MK + +++ N+L++ DE+G
Sbjct: 354 LHIAGDKETEIAIFENVFVDIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIG 413
Query: 642 RGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNL 701
GT +G +A SI E T+ +TH+ EI S + F N + + L
Sbjct: 414 SGTEPNEGAALAISILEEFYL-AGCITVASTHYGEIKRFSEMHDDFMNAAMQF--NSETL 470
Query: 702 VLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETNNREEE 761
LY++ G +S + A E +L++A+ M EY+L+ K +E+ R+ +
Sbjct: 471 EPLYKLVIGKSGESNALWIANKMNVRERVLKRAKAYMGNKEYTLE-KV---NESKIRKPK 526
Query: 762 YFKTVQEGEYQ 772
+ + +E Y+
Sbjct: 527 FLQEKRENHYE 537
Score = 46 (21.3 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 22 VEFYCVHGEDAELIQR 37
V+FYCV G ELI +
Sbjct: 18 VKFYCVSGLGKELINK 33
>UNIPROTKB|A7UVX1 [details] [associations]
symbol:NCU10895 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 EMBL:AABX02000002
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
SUPFAM:SSF48334 OrthoDB:EOG4VHPFT RefSeq:XP_001728471.1
ProteinModelPortal:A7UVX1 EnsemblFungi:EFNCRT00000000709
GeneID:5847835 KEGG:ncr:NCU10895 Uniprot:A7UVX1
Length = 625
Score = 261 (96.9 bits), Expect = 6.1e-19, P = 6.1e-19
Identities = 65/163 (39%), Positives = 96/163 (58%)
Query: 456 IQREYETHQQS-IVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCM 514
+Q + T Q +V E+ ++ + +SD +A D+L SF+ A+T + YVRP
Sbjct: 270 LQADIATMQSDRLVIELKRRLQEHSSLMFDISDAIALLDMLSSFTQAATT--QDYVRP-- 325
Query: 515 KPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVS--FNLVTGPNMGGKSTYIRSI 572
M T S+V+ Q RHPIVE + Y+ NDVY SG+ S F ++TG NM GKST+IRS+
Sbjct: 326 --MITDSMVIKQARHPIVEARTD-QYVANDVY--SGDQSGRFQVITGGNMSGKSTFIRSV 380
Query: 573 GVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTF 615
+ +AQ+G FVP A+IS+ D++F RV D+ + TF
Sbjct: 381 ALIQIMAQMGSFVPAQFASISICDRVFARVSTDDAPENNLGTF 423
>UNIPROTKB|A8J8E2 [details] [associations]
symbol:CHLREDRAFT_120228 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 InterPro:IPR015536
PANTHER:PTHR11361:SF31 EMBL:DS496143 RefSeq:XP_001697747.1
EnsemblPlants:EDO99899 GeneID:5723369 KEGG:cre:CHLREDRAFT_120228
ProtClustDB:CLSN2703491 Uniprot:A8J8E2
Length = 86
Score = 238 (88.8 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 45/86 (52%), Positives = 63/86 (73%)
Query: 558 TGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMM 617
+GPNMGGKST +R ++ LAQ+G +VP +S T+S VD +F R+GA DS G STF +
Sbjct: 1 SGPNMGGKSTLLRQTCLAAILAQVGAWVPAESLTLSPVDSLFVRMGARDSIMTGQSTFFI 60
Query: 618 EMKETATVIKKCTENSLVIIDELGRG 643
E+ ETA ++ + T +SLV++DELGRG
Sbjct: 61 ELAETAAMLARATPDSLVVLDELGRG 86
>UNIPROTKB|B1N483 [details] [associations]
symbol:EHI_019060 "DNA mismatch repair protein mutS,
putative" species:5759 "Entamoeba histolytica" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 EMBL:DS571351 RefSeq:XP_001913998.1
ProteinModelPortal:B1N483 STRING:B1N483 GeneID:6219997
KEGG:ehi:EHI_019060 EuPathDB:AmoebaDB:EHI_019060 InParanoid:B1N483
Uniprot:B1N483
Length = 225
Score = 221 (82.9 bits), Expect = 4.3e-17, P = 4.3e-17
Identities = 59/212 (27%), Positives = 105/212 (49%)
Query: 578 LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 637
+A +GC V +A I + IFT+ ++DS +S F + +T ++ + +SL++I
Sbjct: 1 MALLGCGVCASNAQIPLFSHIFTKFSSSDSSLSSLSAFTTDCSLLSTSLRHLSNDSLLLI 60
Query: 638 DELGRGTSTFDGFGMACSIARELAS--HRQPFTLFATHF----HEIALLSRVIPTFRNVQ 691
DE G+GT DG + + R L S P T+ +THF H I L ++ +P +V
Sbjct: 61 DEFGKGTHPSDGLALFIATLRYLQSLGSNAPKTIISTHFISFFHYIDL-NKCVPLKMDVL 119
Query: 692 VSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPS 751
++ + +++ LY + G SYG+HCA++A P ++ +A + SL T +P
Sbjct: 120 LN--QSNNSITFLYHLVNGISDSSYGIHCARLAHLPSSLISRASQIAT----SLSTSSPI 173
Query: 752 GDETNNREEEYFKTVQEGEYQMFDFLQQCLSL 783
+++ E++ + FD LSL
Sbjct: 174 LPLSSHLNLEFYYNSLLSNFSNFDVDNGDLSL 205
>TIGR_CMR|BA_4794 [details] [associations]
symbol:BA_4794 "MutS2 family protein" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF01713
INTERPRO:IPR002625 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003684 GO:GO:0006298 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:Q56215 RefSeq:NP_846997.1 RefSeq:YP_021440.1
RefSeq:YP_030694.1 ProteinModelPortal:Q81L40 IntAct:Q81L40
EnsemblBacteria:EBBACT00000011403 EnsemblBacteria:EBBACT00000013814
EnsemblBacteria:EBBACT00000023448 GeneID:1083920 GeneID:2815890
GeneID:2851606 KEGG:ban:BA_4794 KEGG:bar:GBAA_4794 KEGG:bat:BAS4447
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 BioCyc:BANT260799:GJAJ-4504-MONOMER
BioCyc:BANT261594:GJ7F-4656-MONOMER PANTHER:PTHR11361:SF14
TIGRFAMs:TIGR01069 Uniprot:Q81L40
Length = 786
Score = 244 (91.0 bits), Expect = 6.8e-17, P = 6.8e-17
Identities = 75/290 (25%), Positives = 139/290 (47%)
Query: 524 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC 583
L Q RHP+++ + +PN++ + ++TGPN GGK+ ++++G+ V +AQ G
Sbjct: 304 LRQARHPLIDPE---VIVPNNIMLGKDFTTI-VITGPNTGGKTVTLKTVGICVLMAQSGL 359
Query: 584 FVPC-DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGR 642
+P D + I V IF +G S + +STF M +++K SLV+ DELG
Sbjct: 360 HIPVMDESEICVFKNIFADIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGA 419
Query: 643 GTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLS----RVIPTFRNVQVSALEQE 698
GT +G +A SI E+ + R + TH+ E+ +VI V+ L
Sbjct: 420 GTDPQEGAALAISILDEVCN-RGARVVATTHYPELKAYGYNREQVINASVEFDVNTLSPT 478
Query: 699 DNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSGDETN-N 757
L++ PG +S +K G +++QAR+ + ++ +E+ N
Sbjct: 479 HKLLIGV---PG---RSNAFEISKRLGLSNRVIDQARNHISTDTNKIENMIAKLEESQKN 532
Query: 758 REEEY--FKTVQEGEYQMFDFLQ-QCLSLSKQKDTNRILHLQETQEPGIE 804
E ++ + +++ ++ LQ Q + ++++D R+L Q+ E +E
Sbjct: 533 AERDWNEAEALRKQSEKLHRELQRQIIEFNEERD-ERLLKAQKEGEEKVE 581
>UNIPROTKB|A8JBH4 [details] [associations]
symbol:CHLREDRAFT_106717 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
EMBL:DS496153 RefSeq:XP_001699298.1 EnsemblPlants:EDO98728
GeneID:5724848 KEGG:cre:CHLREDRAFT_106717 Uniprot:A8JBH4
Length = 111
Score = 209 (78.6 bits), Expect = 8.3e-16, P = 8.3e-16
Identities = 49/109 (44%), Positives = 67/109 (61%)
Query: 556 LVTGPNMGGKSTYIRSIGVSVFLAQIGCFVP----CDSATISVVDQIFTRVGA------- 604
LVTGPNM GKSTY++ +G+ V LAQ GC VP C +++ ++ T +G
Sbjct: 1 LVTGPNMSGKSTYLQQVGLLVVLAQAGCPVPAAHCCLPPFTALLGRLGTAMGGGAGAGGG 60
Query: 605 ADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMA 653
AD G S+F+ EM++ A V+ SLV++DELGRGTST DG G+A
Sbjct: 61 ADDLESGRSSFLTEMQDAAHVLSAAGPRSLVLLDELGRGTSTADGVGLA 109
>TAIR|locus:2087193 [details] [associations]
symbol:MSH1 "AT3G24320" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006298 "mismatch repair" evidence=ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032042 "mitochondrial DNA metabolic process"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0000002 "mitochondrial genome
maintenance" evidence=IGI;IMP] [GO:0009408 "response to heat"
evidence=IGI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0031047 "gene silencing
by RNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] [GO:0051726 "regulation of cell
cycle" evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009411 GO:GO:0003684 GO:GO:0009408 EMBL:AP000382
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF82771 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 EMBL:AY191303
IPI:IPI00526404 RefSeq:NP_189075.2 UniGene:At.43463 HSSP:Q56215
ProteinModelPortal:Q84LK0 SMR:Q84LK0 STRING:Q84LK0 PaxDb:Q84LK0
PRIDE:Q84LK0 EnsemblPlants:AT3G24320.1 GeneID:822021
KEGG:ath:AT3G24320 GeneFarm:4139 TAIR:At3g24320
HOGENOM:HOG000264796 InParanoid:Q84LK0 OMA:RGTETAK PhylomeDB:Q84LK0
ProtClustDB:CLSN2680862 Genevestigator:Q84LK0 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 Uniprot:Q84LK0
Length = 1118
Score = 245 (91.3 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 67/218 (30%), Positives = 104/218 (47%)
Query: 553 SFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGI 612
S L+TGPN GGKS+ +RSI + L G VP +SA I D I + + DS G
Sbjct: 762 SLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESACIPHFDSIMLHMKSYDSPVDGK 821
Query: 613 STFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFAT 672
S+F +EM E +++ + T SLV+IDE+ RGT T G +A S+ L + + +T
Sbjct: 822 SSFQVEMSEIRSIVSQATSRSLVLIDEICRGTETAKGTCIAGSVVESLDTSGC-LGIVST 880
Query: 673 HFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLE 732
H H I L + A E +++ G C +S AK G PE +++
Sbjct: 881 HLHGIFSLPLTAKNITYKAMGAENVEGQTKPTWKLTDGVCRESLAFETAKREGVPESVIQ 940
Query: 733 QARDL-MKEYEYSLDTKTPSGDE---TNNREEEYFKTV 766
+A L + Y + D+ ++N +++ K V
Sbjct: 941 RAEALYLSVYAKDASAEVVKPDQIITSSNNDQQIQKPV 978
Score = 37 (18.1 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 518 GTGSLVLNQCRHPIVE-LQGG-VSYIPN---DVYFKSGEVSFNLVTGPN 561
G G L+ +C E +G +S + + DVY EVSF V P+
Sbjct: 313 GEGGLLWGECSSRNFEWFEGDTLSELLSRVKDVYGLDDEVSFRNVNVPS 361
Score = 37 (18.1 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 21 RVEFYCVHGEDAELIQRKSNVVYLVKTMGQKDKTLETVLVNKSNLSCFSHILCVIS-EDK 79
+VE V +A K+ V+ L++ + K +T VLV S L S L + E +
Sbjct: 651 KVEIALVRYHEASE-NAKARVLELLRELSVKLQTKINVLVFASMLLVISKALFSHACEGR 709
Query: 80 TLETVLTNTVGVAI 93
+ V VG ++
Sbjct: 710 RRKWVFPTLVGFSL 723
>UNIPROTKB|Q76DY7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:274 "Thermus
thermophilus" [GO:0000400 "four-way junction DNA binding"
evidence=IDA] [GO:0004519 "endonuclease activity" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IMP] [GO:0030983 "mismatched DNA
binding" evidence=IDA] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0016887 GO:GO:0006298
GO:GO:0004519 GO:GO:0045910 SMART:SM00463 PROSITE:PS50828
GO:GO:0045005 SUPFAM:SSF48334 GO:GO:0000400 KO:K07456
PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069 EMBL:AB107662
RefSeq:YP_144911.1 ProteinModelPortal:Q76DY7 GeneID:3169358
KEGG:ttj:TTHA1645 Uniprot:Q76DY7
Length = 744
Score = 225 (84.3 bits), Expect = 7.1e-15, P = 7.1e-15
Identities = 53/185 (28%), Positives = 100/185 (54%)
Query: 556 LVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTF 615
L++GPNMGGK+ ++++G++V +AQ G FV + A ++ D+++ +G S +STF
Sbjct: 312 LISGPNMGGKTALLKTLGLAVLMAQSGLFVAAEKALLAWPDRVYADIGDEQSLQENLSTF 371
Query: 616 MMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFH 675
++ ++++ T +SLV+IDELG GT +G ++ +I L R + TH
Sbjct: 372 AGHLRRLREMLEEATSHSLVLIDELGSGTDPEEGAALSQAILEALLE-RGVKGMVTTHLS 430
Query: 676 EIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQAR 735
+ ++ +N + + E L Y++ G +SY + A+ PE++L++A
Sbjct: 431 PLKAFAQGREGIQNASMR-FDLEA-LRPTYELVLGVPGRSYALAIARRLALPEEVLKRAE 488
Query: 736 DLMKE 740
L+ E
Sbjct: 489 ALLPE 493
>UNIPROTKB|Q0JBW2 [details] [associations]
symbol:Os04g0507000 "Os04g0507000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 GO:GO:0009411 GO:GO:0003684
EMBL:AP008210 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 SUPFAM:SSF82771 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 OMA:RGTETAK GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
RefSeq:NP_001053261.1 UniGene:Os.74427 STRING:Q0JBW2 PRIDE:Q0JBW2
EnsemblPlants:LOC_Os04g42784.1 GeneID:4336345 KEGG:osa:4336345
Gramene:Q0JBW2 ProtClustDB:CLSN2694915 Uniprot:Q0JBW2
Length = 1132
Score = 224 (83.9 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
Identities = 66/200 (33%), Positives = 99/200 (49%)
Query: 541 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFT 600
I NDV+ S ++TGPN GGKS+ +RS+ + L G VP SA I D I
Sbjct: 751 ILNDVHMHS----LFILTGPNGGGKSSMLRSVCAAALLGICGLMVPAASAVIPHFDSIML 806
Query: 601 RVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAREL 660
+ A DS G S+F +EM E +++ + T SLV+IDE+ RGT T G +A SI L
Sbjct: 807 HMKAYDSPADGKSSFQIEMSEIRSLVCRATARSLVLIDEICRGTETAKGTCIAGSIIERL 866
Query: 661 ASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQE--DNLVL-LYQVKPGSCVKSYG 717
+ + +TH H I L + N A+ E D + +++ G C +S
Sbjct: 867 -DNVGCIGIISTHLHGIFDLPL---SLHNTDFKAMGTEIIDRCIQPTWKLMDGICRESLA 922
Query: 718 VHCAKMAGYPEDMLEQARDL 737
A+ G P+ ++ +A +L
Sbjct: 923 FQTARKEGMPDLIIRRAEEL 942
Score = 37 (18.1 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 259 LDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTE 300
++RCR P +L + + + LD + R+ ++ NTE
Sbjct: 87 MERCRKPSSMQLTQRLVYSNILGLDPTL-RNGSLKDGSLNTE 127
>UNIPROTKB|A3KGN1 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AL844216 HGNC:HGNC:7328 ChiTaRS:MSH5 SMR:A3KGN1
Ensembl:ENST00000430241 HOGENOM:HOG000172377 Uniprot:A3KGN1
Length = 135
Score = 100 (40.3 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 619 MKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQ--PFTLFATHFHE 676
+K+ A + T SLV+IDE G+GT+T DG + ++ R + P AT+F
Sbjct: 60 LKQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLS 119
Query: 677 IALLSRVIP 685
+ L +++P
Sbjct: 120 LVQL-QLLP 127
Score = 99 (39.9 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 509 YVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTY 568
Y RP P G + N RHP++EL +++PN + ++TGPN GKS Y
Sbjct: 2 YSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFVPNSTECGGDKGRVKVITGPNSSGKSIY 59
Query: 569 IRSIGVSV 576
++ + +V
Sbjct: 60 LKQVAKAV 67
>UNIPROTKB|A8JDD7 [details] [associations]
symbol:CHLREDRAFT_121781 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 Pfam:PF00488 PROSITE:PS00486 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 EMBL:DS496161 RefSeq:XP_001700459.1 STRING:A8JDD7
EnsemblPlants:EDO98148 GeneID:5726009 KEGG:cre:CHLREDRAFT_121781
Uniprot:A8JDD7
Length = 96
Score = 166 (63.5 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 31/93 (33%), Positives = 55/93 (59%)
Query: 564 GKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETA 623
GKS Y R++ + +LA +G +VP +ATI + D+I R A TFM ++ + +
Sbjct: 2 GKSCYARAVALIAYLAHLGSYVPAQAATIGLADRIAARC-ATPPLGAATVTFMADLTQVS 60
Query: 624 TVIKKCTENSLVIIDELGRGTSTFDGFGMACSI 656
+++ TE +L+++DE G+GT DG G+ ++
Sbjct: 61 AMLRTATERTLLVLDEFGKGTLASDGVGLCAAL 93
>TIGR_CMR|GSU_0547 [details] [associations]
symbol:GSU_0547 "MutS2 family protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 SMART:SM00463
PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:NP_951605.1 ProteinModelPortal:Q74FQ9 GeneID:2685958
KEGG:gsu:GSU0547 PATRIC:22023851 ProtClustDB:CLSK827917
BioCyc:GSUL243231:GH27-531-MONOMER Uniprot:Q74FQ9
Length = 792
Score = 190 (71.9 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 72/309 (23%), Positives = 136/309 (44%)
Query: 470 EVIGISAGYTQTLNQLSDVL-AQFDVLVSFSIASTCAPKPYVRPCMKPMGTGS--LVLNQ 526
E+I I + + Q +D L QF +LV + + A P T + + + +
Sbjct: 245 EMIRIVRTICRMIRQEADGLDEQFRILVRLDVLNGIALFADSLGAETPEITDARFIRVRE 304
Query: 527 CRHPIVELQG---GVS-YIPNDVYFKSGE-----VSFNL--VTGPNMGGKSTYIRSIGVS 575
RHP++ L GV +P D+ E V+ + +TGPN GGK+ +++ G+
Sbjct: 305 GRHPLLALMARERGVGRVVPLDLGLGGAERPDSHVANQVMVITGPNAGGKTISLKTTGLL 364
Query: 576 VFLAQIGCFVPCDS-ATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSL 634
+A G VP S ++ ++ + +G S + +STF + A ++++ ++
Sbjct: 365 HLMALAGIPVPAASTSSFPLISDLLVDIGDEQSIEQSLSTFSAHVSNIAGILERADRRTV 424
Query: 635 VIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSA 694
V++DELG GT G ++C++ +L + + TH +I R+ V+A
Sbjct: 425 VLLDELGTGTEPVQGAAISCAVLADLQD-KGALVIATTHLTDIVGFVHK----RDGMVNA 479
Query: 695 LEQEDNLVL--LYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYEYSLDTKTPSG 752
+ D L LY++ G +S+ + A+ G P+ ++ A ++ E
Sbjct: 480 SMEFDRQTLTPLYRLTVGEPGQSHALEIARRYGLPDRVVAVATGMLSRMETEFHELLAEL 539
Query: 753 DETNNREEE 761
+ R EE
Sbjct: 540 KDQRRRHEE 548
Score = 51 (23.0 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 26/127 (20%), Positives = 52/127 (40%)
Query: 277 QPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRV 336
+PL D +AIV R V+ + + ++L +LR D+ L + R + D +
Sbjct: 36 RPLDDREAIVRRFGQVDEIRRLRQLGIDL---SLRSFEDIAPLLAAV-RPDGAVLDPTEL 91
Query: 337 YEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLK-MMDRKDAVMDKMKEYLESTARR 395
L + +I + + L + +L ++D + +D E L+S +
Sbjct: 92 VVLFPILRTMTAIAKQFAYRTDIPLLRELAGTLTGFPDLLDELEVSIDSEGEILDSASPL 151
Query: 396 LNLVADK 402
L+ + K
Sbjct: 152 LSDLRQK 158
>UNIPROTKB|Q8EYH8 [details] [associations]
symbol:LA_4236 "DNA mismatch repair protein ATPase
component" species:189518 "Leptospira interrogans serovar Lai str.
56601" [GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 GO:GO:0008094
GO:GO:0032300 EMBL:AE010300 GenomeReviews:AE010300_GR
RefSeq:NP_714416.1 ProteinModelPortal:Q8EYH8 GeneID:1153578
KEGG:lil:LA_4236 PATRIC:22389315 HOGENOM:HOG000117340 OMA:RERSLAC
ProtClustDB:CLSK575192 BioCyc:LINT189518:GJBB-3356-MONOMER
Uniprot:Q8EYH8
Length = 610
Score = 190 (71.9 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 61/187 (32%), Positives = 101/187 (54%)
Query: 529 HPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCD 588
HP++ VS P D + V L+TG NM GK+TY+R+IGV+ L+ G VP
Sbjct: 415 HPLIPSDSRVSN-PLDFIEEQNVV---LITGSNMSGKTTYLRTIGVASILSMAGGPVPAS 470
Query: 589 SATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTE-NS--LVIIDELGRGTS 645
++ V+ +I T + D+ GIS F E++ + ++KK + NS LV++DE+ +GT+
Sbjct: 471 KFSLPVL-KIHTSMRNEDNLEEGISFFYAEVRRLSEIVKKIRDKNSSHLVLLDEILKGTN 529
Query: 646 TFDGFGMACS-IARELASHRQPFTLFAT-HFHEIALLSRVIPTFRNVQVSALEQEDNLVL 703
T + +AC I +EL +R +F T H E+A + VI ++ Q L+ +
Sbjct: 530 TRER-SLACKGILKELKKNRT--IVFVTSHDLELAKVEGVI--LKHFQEEVLD--GTMYF 582
Query: 704 LYQVKPG 710
Y+++ G
Sbjct: 583 DYKIREG 589
Score = 46 (21.3 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 30/157 (19%), Positives = 64/157 (40%)
Query: 3 FYLFFFPQKSKTTIRFFNRVEFYCVHGEDAELIQRKSNVVYLVKTMGQKDKTLETVLVNK 62
F FFF ++ K T+ +++ + +++R+S + +K G+K T + VL
Sbjct: 67 FLFFFFVRRYKKTLLTRKKIQLWIF------VLERESARIS-IKGFGKKFGT-QIVLEKV 118
Query: 63 SNLSCFSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQK 122
S L+ + L+T T+ + K + ++ D Y+N E +++++
Sbjct: 119 SPLARDLDLFRENGLFSWLDTTFTSNA-------EQKLIALLDLEDSSSYNNRENVLLRQ 171
Query: 123 SPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNE 159
S + ++ + L N+ R K E
Sbjct: 172 SIVRSISEKTLAIPKILRLASYLKENQDVFQARTKTE 208
>UNIPROTKB|Q8A4A6 [details] [associations]
symbol:BT_2697 "DNA mismatch repair protein mutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0008094 SUPFAM:SSF48334 HSSP:Q56215 GO:GO:0032300
HOGENOM:HOG000022931 OMA:ESYFFAE RefSeq:NP_811609.1
ProteinModelPortal:Q8A4A6 GeneID:1072523 KEGG:bth:BT_2697
PATRIC:21060335 ProtClustDB:CLSK823265
BioCyc:BTHE226186:GJXV-2751-MONOMER Uniprot:Q8A4A6
Length = 604
Score = 159 (61.0 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 48/161 (29%), Positives = 79/161 (49%)
Query: 554 FNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVD-QIFTRVGAADSQYRGI 612
F ++TG NM GKSTY+R++GV+ LA IG P +A + + ++ T + +DS
Sbjct: 426 FIIITGANMAGKSTYLRTVGVNYLLACIGA--PVWAAKMEIFPARLVTSLRTSDSLTDNE 483
Query: 613 STFMMEMKETATVIKKCT--ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLF 670
S F E+K +I K E +I+DE+ +GT++ D + ++ ++ S +
Sbjct: 484 SYFFAELKRLKLIIDKLKAGEELFIILDEILKGTNSMDKQKGSFALIKQFMS-MDANGII 542
Query: 671 ATHFHEIALLSRVIP-TFRNVQVSALEQEDNLVLLYQVKPG 710
ATH + L P RN A + L YQ++ G
Sbjct: 543 ATHDLLLGTLIDAFPQNIRNYCFEADITNNELTFSYQMRSG 583
Score = 77 (32.2 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 32/121 (26%), Positives = 52/121 (42%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYAL--R 311
SL ++R TP G + LA W L++ +AI +R A+ L + E R L +
Sbjct: 131 SLFQYINRTSTPIGKQRLANWFNAHLEEKEAIEQRQEAIRELSSELEFRQQFRLLGLLYK 190
Query: 312 GLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQS 371
G P S I D YR + + LP + I+ L + A+ L + +S+
Sbjct: 191 GKPSDTS---EIKEWVNSPSD-YRKHAFLRILPTAVGIINLLC--IGATILGFLPASISG 244
Query: 372 L 372
+
Sbjct: 245 I 245
>UNIPROTKB|I3LUG7 [details] [associations]
symbol:LOC100624532 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 SMART:SM00533 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR015536 PANTHER:PTHR11361:SF31
GeneTree:ENSGT00550000075024 EMBL:FP700151
Ensembl:ENSSSCT00000028816 OMA:DDNPARG Uniprot:I3LUG7
Length = 1011
Score = 106 (42.4 bits), Expect = 4.8e-10, Sum P(3) = 4.8e-10
Identities = 59/244 (24%), Positives = 109/244 (44%)
Query: 230 MSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERH 289
+ + +++L + +T+ +LL +D C TP G RLL QW+ PL + AI +R
Sbjct: 585 LDAVTLNNLEIF--LNATNGSPEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPYAISDRL 642
Query: 290 AAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISI 349
A+ L+ + + + L+ LPD++ L +I + LK P +I
Sbjct: 643 DAIEDLMVVPDKISEVVDL-LKKLPDLERLLSKIHNVGSPLKS--------QNHPDSRAI 693
Query: 350 LESLVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENS 409
+ + LS+L+ K++ + +M+++ + +S + L T++ +N
Sbjct: 694 MYEET-TYSKKKIIDFLSALEGFKVICKIRGIMEEVIDDFKSKILKQVL----TLQTKN- 747
Query: 410 PQGFAYRITMKLNN---SIDD---RYTILDTVRGGVRFQ-DDRLATANTQYQAIQREYET 462
P+G +T++LN + D R T L T + G D LA Q++ EY
Sbjct: 748 PEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLL-EYLE 806
Query: 463 HQQS 466
Q+S
Sbjct: 807 KQRS 810
Score = 104 (41.7 bits), Expect = 4.8e-10, Sum P(3) = 4.8e-10
Identities = 34/99 (34%), Positives = 46/99 (46%)
Query: 487 DVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGS---LVLNQCRHP-IVELQGGVSYIP 542
+ +A DVL+ + S P RP + G + L L RHP I + G +IP
Sbjct: 902 ECIAVLDVLLCLANYSRGGDGPMCRPVILLPGEDTPPFLYLKGSRHPCITKTFFGDDFIP 961
Query: 543 NDVYFKSGEVSFN-------LVTGPNMGGKSTYIRSIGV 574
ND+ E LVTGPNMGGKST +R + +
Sbjct: 962 NDILIGCEEEEEENDKAYCVLVTGPNMGGKSTLMRQVNL 1000
Score = 72 (30.4 bits), Expect = 4.8e-10, Sum P(3) = 4.8e-10
Identities = 18/75 (24%), Positives = 31/75 (41%)
Query: 68 FSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKEC 127
+S L + E + + T GV VD KF++G+ DD + S ++ P +
Sbjct: 385 YSKYLLSLKEKEDDSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQV 444
Query: 128 LLPAEYLNDNKNKIV 142
L L+ I+
Sbjct: 445 LFEKGSLSTETKMIL 459
>UNIPROTKB|H0YDS7 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 EMBL:CR759915 EMBL:CR925765 HGNC:HGNC:7328
ChiTaRS:MSH5 Ensembl:ENST00000469938 Ensembl:ENST00000471854
Ensembl:ENST00000484309 Ensembl:ENST00000486024
Ensembl:ENST00000497253 Uniprot:H0YDS7
Length = 166
Score = 100 (40.3 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 619 MKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQ--PFTLFATHFHE 676
+K+ A + T SLV+IDE G+GT+T DG + ++ R + P AT+F
Sbjct: 60 LKQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLS 119
Query: 677 IALLSRVIP 685
+ L +++P
Sbjct: 120 LVQL-QLLP 127
Score = 99 (39.9 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 509 YVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTY 568
Y RP P G + N RHP++EL +++PN + ++TGPN GKS Y
Sbjct: 2 YSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFVPNSTECGGDKGRVKVITGPNSSGKSIY 59
Query: 569 IRSIGVSV 576
++ + +V
Sbjct: 60 LKQVAKAV 67
>UNIPROTKB|A9WD22 [details] [associations]
symbol:Caur_0340 "DNA mismatch repair protein MutS domain
protein" species:324602 "Chloroflexus aurantiacus J-10-fl"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 EMBL:CP000909
GenomeReviews:CP000909_GR GO:GO:0008094 eggNOG:COG0249
GO:GO:0032300 RefSeq:YP_001633980.1 GeneID:5827953
KEGG:cau:Caur_0340 PATRIC:21411212 HOGENOM:HOG000020547 OMA:QGGKSTF
ProtClustDB:CLSK865139 BioCyc:CAUR324602:GIXU-343-MONOMER
Uniprot:A9WD22
Length = 505
Score = 169 (64.5 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 48/174 (27%), Positives = 80/174 (45%)
Query: 503 TCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNM 562
T KP P P L + + L G S + ND+ G+ S +VTGPN
Sbjct: 279 TALGKPVTFPQPVPAHERRLSCAELYDVTLALTLGSSVVGNDIS-ADGK-SLIIVTGPNR 336
Query: 563 GGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKET 622
GGK+ ++RS+GV+ + Q G FVP +S ++ +FT + + F E+
Sbjct: 337 GGKTVFLRSVGVAQLMMQCGMFVPAESFLANLTTGLFTHFKREEDKTMERGKFEEELARM 396
Query: 623 ATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHE 676
+ ++ T N+L++++E T+ +G +A I L + F TH +E
Sbjct: 397 SVIVDYLTPNALLLLNESFSATNEREGSEIARQIVSTLIE-KGIKVYFVTHLYE 449
>UNIPROTKB|Q7NE77 [details] [associations]
symbol:gll4003 "Gll4003 protein" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 GO:GO:0008094
EMBL:BA000045 GenomeReviews:BA000045_GR SUPFAM:SSF48334 HSSP:Q56215
GO:GO:0032300 RefSeq:NP_926949.1 ProteinModelPortal:Q7NE77
GeneID:2602406 KEGG:gvi:gll4003 PATRIC:22047503
HOGENOM:HOG000022931 OMA:ESYFFAE ProtClustDB:CLSK923279
BioCyc:GVIO251221:GH9A-4052-MONOMER Uniprot:Q7NE77
Length = 619
Score = 148 (57.2 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 79/315 (25%), Positives = 131/315 (41%)
Query: 426 DDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQL 485
+DR LDT+ G + +L Q+ + ++ H ++E S +
Sbjct: 312 EDRLRKLDTLVGCSDLRFSQLIYLAVQWITL---WDVHVLGLLESWRRQSG---DRVRSW 365
Query: 486 SDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDV 545
+ LAQ + L S +AS +P + Q HP++ G + NDV
Sbjct: 366 LEALAQIEALAS--LASLAHDQPEWVFAEVDTRLQVIAAGQLGHPLI---GEAVRVANDV 420
Query: 546 YFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAA 605
+F LVTG NM GKST +RSIG+++ LA G V S + V + T +
Sbjct: 421 TL-GPPGTFLLVTGSNMSGKSTLLRSIGLNIVLALAGAPVCARSLRLPPVT-LKTSMRVQ 478
Query: 606 DSQYRGISTFMMEM---KETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELAS 662
DS G+S +M E+ KE + L ++DE+ GT++ + ++ R L+
Sbjct: 479 DSLASGLSFYMAELQRLKEVVDAARPAERPLLYLLDEILLGTNSAE---RQVAVRRVLSF 535
Query: 663 HRQPFTLFATHFHEIAL--LSRVIPTFRNVQV----SALEQEDNLVLLYQVKPGSCVKSY 716
L A H++AL L + R V +A + Y+++PG +
Sbjct: 536 LLGRGALGAISTHDLALADLPELAAAARTVHFREHFAAGAAGPVMTFDYRMRPGVAPTTN 595
Query: 717 GVHCAKMAGY--PED 729
+ ++ G PED
Sbjct: 596 ALKLLELVGLGDPED 610
Score = 64 (27.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNL 305
SL + TP G RLLA+W+ +P AI R A+ L + R +L
Sbjct: 138 SLFQLTCTAHTPMGRRLLARWLLEPAGPA-AIAGRQRAIADLAPLLDWRQDL 188
>UNIPROTKB|A9WD21 [details] [associations]
symbol:Caur_0339 "DNA mismatch repair protein MutS domain
protein" species:324602 "Chloroflexus aurantiacus J-10-fl"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 EMBL:CP000909
GenomeReviews:CP000909_GR GO:GO:0008094 eggNOG:COG0249
GO:GO:0032300 RefSeq:YP_001633979.1 ProteinModelPortal:A9WD21
GeneID:5827952 KEGG:cau:Caur_0339 PATRIC:21411210
HOGENOM:HOG000020534 OMA:THFEREE ProtClustDB:CLSK865138
BioCyc:CAUR324602:GIXU-342-MONOMER Uniprot:A9WD21
Length = 508
Score = 161 (61.7 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 54/196 (27%), Positives = 96/196 (48%)
Query: 543 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRV 602
ND +F +G +VTGPN GGK+T+ R G +LA +GC VP A + + D+IFT
Sbjct: 320 ND-FFLTGPERILVVTGPNQGGKTTFARMFGQLHYLASLGCPVPGREAGLFLADRIFTHF 378
Query: 603 GAA-DSQ-YRG-ISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARE 659
DSQ RG + ++ M + + T +S+ I++E+ T+ D ++ I
Sbjct: 379 ERIEDSQNLRGKLEDDLVRMHRA---LIQATPDSIFILNEIFSSTTVQDALFLSKEIMAR 435
Query: 660 LASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQV--KPGSCVKSYG 717
L ++ T E+A LS + + V++++ D + +Q+ KP + +Y
Sbjct: 436 LTD-LDVLGVWVTFLDELASLSEKMVSM----VASVDPNDPVRRTFQIIRKPADGL-AYA 489
Query: 718 VHCAKMAGYPEDMLEQ 733
+ A+ G + L++
Sbjct: 490 LSLARKHGLSREQLQE 505
>UNIPROTKB|Q23YW9 [details] [associations]
symbol:TTHERM_00857890 "MutS domain II family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:GG662557 RefSeq:XP_001021931.1
ProteinModelPortal:Q23YW9 EnsemblProtists:EAS01686 GeneID:7832209
KEGG:tet:TTHERM_00857890 Uniprot:Q23YW9
Length = 1537
Score = 166 (63.5 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 106/465 (22%), Positives = 201/465 (43%)
Query: 181 KNARLLPEMC-LTTATHCLRSLINYLELMNNEDNMN-QFSIHSIDYSKYVHMSSAVMSSL 238
K++ L+ ++ L A L +LIN++E+ + Q I I + M L
Sbjct: 877 KSSNLIQKLDNLYVALASLNALINHIEVTQELYLLKEQLQIGFIQMDSILVMDHKTALDL 936
Query: 239 HVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNN 298
+L QQ S + + SL+ + + +T G RLL + QPL DL ++ +R +AV N
Sbjct: 937 ELLIQQLSQNEK--GSLISLF-KIQTVAGKRLLRSNLLQPLNDLKSLQDRQSAVFEFTMN 993
Query: 299 TEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVE 358
++ ++ + L+ + DMQ+ ++ + + ++ E + Q L S LE +QN +
Sbjct: 994 QDSILSQLQLQLQ-IIDMQNSYIKELKNLLCDQQLEQIKESIKQNLDL-SYLEK-IQNQQ 1050
Query: 359 ASNLNTILSSLQSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRIT 418
+ ++ + LK KD +++ + + S + N D + +N G+A +
Sbjct: 1051 QHKSHDLIYFI--LKA--EKDNLLEIERTKMVSIQKYAN---DIFCEYQNKLIGYA---S 1100
Query: 419 MKLNNSIDDRYTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGY 478
++L + + Y ++ + + + N + I+ E + + + IG S+
Sbjct: 1101 LELKENENRGYYLIA--------RKAKKQSQNINQKKIEELIEDNLIEVNDNKIGKSSQI 1152
Query: 479 TQTLNQLSDVLAQFDVLVSFSIAST--CAPKPYVRPC----MKPMGTGSLVLN---QCRH 529
T +++ F SFS T C PK + LV N Q R
Sbjct: 1153 TFVTQIFAELSNHF--YYSFSSEETPLCLPKLINEEINLLVLDEFYHPLLVYNNKDQWRR 1210
Query: 530 PIV-ELQGGVSYIPNDVYFKSGEV------SFNLVTGPNMGGKSTYIRSIGVSVFLAQIG 582
+ Q S+ ++VY + + + L G GKS I+SI + +AQ+G
Sbjct: 1211 KSSNQNQQDESFGHSNVYIQKNSICISDLNNLQLFLGQQNCGKSILIKSIAIIQIMAQVG 1270
Query: 583 CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK 627
C+VP + IS+ + I ++ DS S+F E+++ +IK
Sbjct: 1271 CYVPAKNGVISLKNLILSKFYTTDSIEEKQSSFTSELQQLDFIIK 1315
Score = 129 (50.5 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 92/402 (22%), Positives = 174/402 (43%)
Query: 39 SNVVYLVKTMGQKDKTLETVLVNKSNLSCFSHIL-----CVISEDKTLETVLT------N 87
SN ++ K M + D + + NK+ L FS + SEDK ++ ++ N
Sbjct: 737 SNQMHNSKGMQKNDTKINS---NKTQLQLFSKQVKKRKEINYSEDKLMQHIVAIIENHAN 793
Query: 88 TVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILDR 147
VG A ++ T + + +I D Y N + I P E + + + +V IL +
Sbjct: 794 QVGFAAFNVQTGQISISQIVDRLTYLNTTSTIFAFYPLEIIFSN---TQSSSYLVKILQQ 850
Query: 148 NKVC--MTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMC-LTTATHCLRSLINY 204
T K+N F E + + K++ L+ ++ L A L +LIN+
Sbjct: 851 QLPLTKFTSVKRNYFDETKGESILKK---------KSSNLIQKLDNLYVALASLNALINH 901
Query: 205 LELMNNEDNMN-QFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCR 263
+E+ + Q I I + M L +L QQ S + + SL+ + + +
Sbjct: 902 IEVTQELYLLKEQLQIGFIQMDSILVMDHKTALDLELLIQQLSQNEK--GSLISLF-KIQ 958
Query: 264 TPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRI 323
T G RLL + QPL DL ++ +R +AV N ++ ++ + L+ + DMQ+ ++
Sbjct: 959 TVAGKRLLRSNLLQPLNDLKSLQDRQSAVFEFTMNQDSILSQLQLQLQ-IIDMQNSYIKE 1017
Query: 324 GRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSLK--MMDRKDAV 381
+ + ++ E + Q L S LE + + + + I L++ K +++ +
Sbjct: 1018 LKNLLCDQQLEQIKESIKQNLDL-SYLEKIQNQQQHKSHDLIYFILKAEKDNLLEIERTK 1076
Query: 382 MDKMKEYLEST-ARRLN-LVADKTIKL-ENSPQGFAYRITMK 420
M +++Y N L+ +++L EN +G+ Y I K
Sbjct: 1077 MVSIQKYANDIFCEYQNKLIGYASLELKENENRGY-YLIARK 1117
Score = 53 (23.7 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 15/80 (18%), Positives = 37/80 (46%)
Query: 623 ATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA-SHRQPFTLFATHFHEIALLS 681
A + K + ++++IDE + D ++ + E++ F L A+ ++E+ ++
Sbjct: 1332 ALSLSKSKDKTIILIDEFCSSSQYEDNISISLAFLEEISICFPNSFLLCASKYYELVQMT 1391
Query: 682 RVIPTFRNVQVSALEQEDNL 701
+ + N Q + Q+ L
Sbjct: 1392 QF---YNNFQYFFINQDYQL 1408
Score = 42 (19.8 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 777 LQQCLSLSKQKDTNRIL 793
+ Q LSLSK KD IL
Sbjct: 1329 VNQALSLSKSKDKTIIL 1345
>UNIPROTKB|H7C2J4 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
SMART:SM00533 GO:GO:0005524 EMBL:AL662899 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 HGNC:HGNC:7328 ChiTaRS:MSH5
ProteinModelPortal:H7C2J4 Ensembl:ENST00000423982 Bgee:H7C2J4
Uniprot:H7C2J4
Length = 637
Score = 117 (46.2 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 482 LNQLSDVLAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYI 541
L ++ D+ ++ DVL++ +AS Y RP P G + N RHP++EL +++
Sbjct: 519 LTRVLDLASRLDVLLA--LASAARDYGYSRPRYSPQVLGVRIQNG-RHPLMELCAR-TFV 574
Query: 542 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 574
PN + ++TGPN GKS Y++ + +
Sbjct: 575 PNSTECGGDKGRVKVITGPNSSGKSIYLKQLRI 607
Score = 91 (37.1 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
Identities = 42/184 (22%), Positives = 76/184 (41%)
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVN--ILVNNTEARMNLHEYALR 311
SL GIL+RC G +LL W +P DL + R + +L N + LH L
Sbjct: 253 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRL-LG 311
Query: 312 GLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVE-----ASNLNTIL 366
+ ++ + R+ + D +Y+ V L SL Q+++ A + L
Sbjct: 312 HIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDL 371
Query: 367 SSLQSL--KMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNS 424
+ SL K++D + ++ + L + ++ +K +L P F + K +
Sbjct: 372 HHIASLIGKVVDFEGSLAENRFTVLPNIDPEID---EKKRRLMGLPS-FLTEVARKELEN 427
Query: 425 IDDR 428
+D R
Sbjct: 428 LDSR 431
Score = 59 (25.8 bits), Expect = 8.2e-05, Sum P(3) = 8.2e-05
Identities = 45/203 (22%), Positives = 83/203 (40%)
Query: 201 LINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILD 260
+I + L N D M Q + + K V + M H +T S LG+ D
Sbjct: 290 VIQFFLLPQNLD-MAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRD 348
Query: 261 RCRT-PQGHRL---LAQWMKQPLKDLDAIV------ERHAAVN--ILVNNTEARMNLHEY 308
CR+ PQ +L +AQ L + +++ E A N ++ N + ++ +
Sbjct: 349 ACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKR 408
Query: 309 ALRGLPDMQSLAMR--IGRKKAGLKDCYRVYEGVSQLPKLISI--LESLVQ--NVEASNL 362
L GLP + R + + + C +Y + + L+SI L S+V+ + E + L
Sbjct: 409 RLMGLPSFLTEVARKELENLDSRIPSCSVIY--IPLIGFLLSIPRLPSMVEASDFEINGL 466
Query: 363 NTILSSLQSLKMMDRKDAVMDKM 385
+ + S + L + +D +
Sbjct: 467 DFMFLSEEKLHYRSARTKELDAL 489
Score = 46 (21.3 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 84 VLTNT--VGVAIVDL-DTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNK 140
VL N+ +G+A D D+ +M + PD + L+ ++ + +P+ + A+ ++N +
Sbjct: 54 VLWNSGYLGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQ-DENMTR 112
Query: 141 IV 142
+
Sbjct: 113 FL 114
>WB|WBGene00003420 [details] [associations]
symbol:msh-4 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] InterPro:IPR000432
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 GeneTree:ENSGT00550000074897
EMBL:FO081112 HSSP:Q56215 PIR:T16784 RefSeq:NP_495458.1
UniGene:Cel.32838 ProteinModelPortal:Q22103 SMR:Q22103
STRING:Q22103 EnsemblMetazoa:T02G5.6 GeneID:191708
KEGG:cel:CELE_T02G5.6 UCSC:T02G5.6 CTD:191708 WormBase:T02G5.6
InParanoid:Q22103 OMA:ESAHILR NextBio:950048 Uniprot:Q22103
Length = 107
Score = 134 (52.2 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA 661
+G D R S F EM + A +++ +NSLV++DEL R TST +G + +I ++
Sbjct: 1 MGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVL 60
Query: 662 SHRQPFTLFATHFHEIALLS 681
+T ATHF +IA L+
Sbjct: 61 KLHS-YTFLATHFLDIAALA 79
>UNIPROTKB|Q22103 [details] [associations]
symbol:msh-4 "Protein MSH-4" species:6239 "Caenorhabditis
elegans" [GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 GeneTree:ENSGT00550000074897
EMBL:FO081112 HSSP:Q56215 PIR:T16784 RefSeq:NP_495458.1
UniGene:Cel.32838 ProteinModelPortal:Q22103 SMR:Q22103
STRING:Q22103 EnsemblMetazoa:T02G5.6 GeneID:191708
KEGG:cel:CELE_T02G5.6 UCSC:T02G5.6 CTD:191708 WormBase:T02G5.6
InParanoid:Q22103 OMA:ESAHILR NextBio:950048 Uniprot:Q22103
Length = 107
Score = 134 (52.2 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA 661
+G D R S F EM + A +++ +NSLV++DEL R TST +G + +I ++
Sbjct: 1 MGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVL 60
Query: 662 SHRQPFTLFATHFHEIALLS 681
+T ATHF +IA L+
Sbjct: 61 KLHS-YTFLATHFLDIAALA 79
>UNIPROTKB|A8JJF1 [details] [associations]
symbol:CHLREDRAFT_181107 "MSH2-like protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR007696 GO:GO:0005524
GO:GO:0003684 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 EMBL:DS496467 RefSeq:XP_001698121.1
EnsemblPlants:EDO95996 GeneID:5723679 KEGG:cre:CHLREDRAFT_181107
Uniprot:A8JJF1
Length = 221
Score = 140 (54.3 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 33/118 (27%), Positives = 62/118 (52%)
Query: 402 KTIKLE----NSPQGFAYRITMK----LNNSIDDRYTILDTVRGGVRFQDDRLATANTQY 453
K+IKLE + + RIT K + + +Y +++T + G +F L A +
Sbjct: 104 KSIKLEWHKAANTRSRCLRITQKEEKNVRGKLQSKYLVIETRKDGTKFTHKPLREAAERL 163
Query: 454 QAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVR 511
A +Y Q +V++V+ ++A + + ++ +L + DVL++F+ A+ AP PYVR
Sbjct: 164 NAASGQYGAVQAELVQQVVSVAATFVEVWEEVGALLGELDVLLAFAEAACVAPTPYVR 221
>UNIPROTKB|A8J417 [details] [associations]
symbol:CHLREDRAFT_175628 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 EMBL:DS496136
RefSeq:XP_001696056.1 ProteinModelPortal:A8J417 SMR:A8J417
EnsemblPlants:EDP01005 GeneID:5721674 KEGG:cre:CHLREDRAFT_175628
Uniprot:A8J417
Length = 594
Score = 160 (61.4 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 39/71 (54%), Positives = 48/71 (67%)
Query: 630 TENSLVIIDELGRGTSTFDGFGMACSIARELASHR--QPFTLFATHFHEIALLSRVIPTF 687
T +SLVIIDELGRGTST+DGFG+A +I+ LA P LFATHFHE+ L R
Sbjct: 507 TSHSLVIIDELGRGTSTYDGFGLAWAISEHLAGPGCGAP-CLFATHFHELTEL-RADVGV 564
Query: 688 RNVQVSALEQE 698
+N+QV A+ E
Sbjct: 565 QNMQVIAMANE 575
Score = 37 (18.1 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 506 PKPYVRPC--MKPMGTGSLVL 524
P+ ++P M+P GTG L L
Sbjct: 281 PQSQLQPQHPMRPRGTGQLQL 301
>UNIPROTKB|C9J809 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0003684 "damaged
DNA binding" evidence=IEA] [GO:0006119 "oxidative phosphorylation"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008340 "determination of adult lifespan" evidence=IEA]
[GO:0008584 "male gonad development" evidence=IEA] [GO:0010165
"response to X-ray" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0030183 "B
cell differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] InterPro:IPR007695 InterPro:IPR007860
Pfam:PF01624 Pfam:PF05188 GO:GO:0005524 GO:GO:0008340 GO:GO:0006915
GO:GO:0042493 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0007283 GO:GO:0016887 GO:GO:0006119
GO:GO:0008584 GO:GO:0006298 GO:GO:0019237 GO:GO:0014070
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045910
GO:GO:0006301 GO:GO:0031573 GO:GO:0016446 EMBL:AC079775
GO:GO:0032137 GO:GO:0032301 EMBL:AC138655 HGNC:HGNC:7325
ChiTaRS:MSH2 IPI:IPI00783458 ProteinModelPortal:C9J809 SMR:C9J809
STRING:C9J809 Ensembl:ENST00000454849 HOGENOM:HOG000122061
ArrayExpress:C9J809 Bgee:C9J809 Uniprot:C9J809
Length = 140
Score = 117 (46.2 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLP 130
VGV VD +K + E PD+D +SNLEA+++Q PKEC+LP
Sbjct: 95 VGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLP 136
>TIGR_CMR|CJE_1196 [details] [associations]
symbol:CJE_1196 "DNA mismatch repair protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006259 "DNA metabolic process"
evidence=ISS] InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 PIRSF:PIRSF005814 SMART:SM00533
SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0030983 PROSITE:PS50828 GO:GO:0045005 eggNOG:COG1193
KO:K07456 ProtClustDB:PRK00409 PANTHER:PTHR11361:SF14
RefSeq:YP_179186.1 ProteinModelPortal:Q5HU49 STRING:Q5HU49
GeneID:3231705 KEGG:cjr:CJE1196 PATRIC:20044188
HOGENOM:HOG000102093 OMA:KIEFVSG
BioCyc:CJEJ195099:GJC0-1223-MONOMER Uniprot:Q5HU49
Length = 735
Score = 151 (58.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 92/417 (22%), Positives = 173/417 (41%)
Query: 377 RKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMKLNNSIDDRYTILDTVR 436
+ ++++ + K++ + A L+ D I L N+ + R N++I + I+
Sbjct: 145 KNESIIAEFKKFCYTKALMPYLI-DTQIHLINNLEALLVR--GGFNHAIKAK--IIGRSS 199
Query: 437 GGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLV 496
GG F L+ N Q I++ ++ E SA + L L + FD+
Sbjct: 200 GG-GFYIVPLSVENLQND-IEKIKNQKEEIYYEYAKNFSAFLAKNLPFLKFINTAFDLFD 257
Query: 497 SFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNL 556
+S A K + T LVL HP ++ VS + FK + +
Sbjct: 258 HYSARVLLAKKKDFEFVLCDQST-DLVLKNFAHPALKNPKSVS-----LEFKKQVL---I 308
Query: 557 VTGPNMGGKSTYIRSIGVSVFLAQ--IGCFVPCDSATISVVDQIFTRVGAADSQYRGIST 614
+TG N GGKS ++S+ + FLA+ + + + I + + + IST
Sbjct: 309 ITGVNAGGKSMLLKSMLSAAFLAKHLLPMHIKASESKIGTFKEFDAIIEDPQNVKNDIST 368
Query: 615 FMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHF 674
F M + + K +N L+ IDE+ GT + + + +L ++ + TH
Sbjct: 369 FAGRMLHFSRLFSK--KNLLLGIDEIELGTDFEEAACLYSVLISKLIANNLKI-IITTHH 425
Query: 675 HEIALLSRVIPTFRNVQ-VSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQ 733
+A+L + V+ ++AL E+ Y+ G+ KSY A P +++ +
Sbjct: 426 KRLAML---LAKNEQVELIAALYDEELSRPKYEFLKGTIGKSYAFETALRYQIPPNLVGE 482
Query: 734 ARDLMKEYEYSLDTKTPSGDETNNREEEYFKTVQEGEYQMFDFLQQCLSLSKQKDTN 790
A+ L E + +L+ + + V++ E ++ + L LSL +QK+ N
Sbjct: 483 AKKLYGEDKENLEELVGKNINLELELKAKLENVEKKEQKVDEIL---LSLKEQKEKN 536
Score = 37 (18.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 134 LNDNKNKIVTILDRN 148
+ND K ++++ LD N
Sbjct: 1 MNDTKEELISKLDLN 15
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 813 813 0.00099 121 3 11 22 0.38 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 182
No. of states in DFA: 615 (65 KB)
Total size of DFA: 378 KB (2186 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 78.02u 0.10s 78.12t Elapsed: 00:00:23
Total cpu time: 78.12u 0.11s 78.23t Elapsed: 00:00:23
Start: Thu Aug 15 12:20:44 2013 End: Thu Aug 15 12:21:07 2013
WARNINGS ISSUED: 1