RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5289
(813 letters)
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A*
2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Length = 934
Score = 699 bits (1806), Expect = 0.0
Identities = 318/880 (36%), Positives = 481/880 (54%), Gaps = 103/880 (11%)
Query: 3 FYLFFF--PQKSKTTIRFFNRVEFYCVHGEDAELIQRKSNVVYL----VKTMGQKDKT-- 54
F FF P+K TT+R F+R +FY HGEDA L + V+ +K MG
Sbjct: 19 FVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLA---AREVFKTQGVIKYMGPAGAKNL 75
Query: 55 -------------LETVLVNKS-----------------------------NLSCFSHIL 72
++ +L+ + NLS F IL
Sbjct: 76 QSVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLAYKASPGNLSQFEDIL 135
Query: 73 ---------CVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKS 123
+ K VGV VD +K + E PD+D +SNLEA+++Q
Sbjct: 136 FGNNDMSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIG 195
Query: 124 PKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNA 183
PKEC+LP + K+ I+ R + +T RKK +FS +D+ QD+NRL++ E N+
Sbjct: 196 PKECVLPGGETAGDMGKLRQIIQRGGILITERKKADFSTKDIYQDLNRLLKGKKGEQMNS 255
Query: 184 RLLPEMCLTTATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQ 243
+LPEM A L ++I +LEL++++ N QF + + D+S+Y+ + A + +L+ L Q
Sbjct: 256 AVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAAVRALN-LFQ 314
Query: 244 QGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARM 303
SL +L++C+TPQG RL+ QW+KQPL D + I ER V V + E R
Sbjct: 315 GSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQ 374
Query: 304 NLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLN 363
L E LR PD+ LA + R+ A L+DCYR+Y+G++QLP +I LE + L
Sbjct: 375 TLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLA 434
Query: 364 TILSSLQSL------------------------------------KMMDRKDAVMDKMKE 387
++ L L ++ + + + KM+
Sbjct: 435 VFVTPLTDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQS 494
Query: 388 YLESTARRLNLVADKTIKLENSPQ-GFAYRITMKLNNSIDD--RYTILDTVRGGVRFQDD 444
L S AR L L K IKL++S Q G+ +R+T K + + ++ +D + GV+F +
Sbjct: 495 TLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNS 554
Query: 445 RLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTC 504
+L + N +Y + EYE Q +IV+E++ IS+GY + + L+DVLAQ D +VSF+ S
Sbjct: 555 KLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNG 614
Query: 505 APKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGG 564
AP PYVRP + G G ++L RH VE+Q +++IPNDVYF+ + F+++TGPNMGG
Sbjct: 615 APVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGG 674
Query: 565 KSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETAT 624
KSTYIR GV V +AQIGCFVPC+SA +S+VD I RVGA DSQ +G+STFM EM ETA+
Sbjct: 675 KSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETAS 734
Query: 625 VIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVI 684
+++ T++SL+IIDELGRGTST+DGFG+A +I+ +A+ F +FATHFHE+ L+ I
Sbjct: 735 ILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQI 794
Query: 685 PTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE-Y 743
PT N+ V+AL E+ L +LYQVK G C +S+G+H A++A +P+ ++E A+ E E +
Sbjct: 795 PTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEF 854
Query: 744 SLDTKTPSGDETNNREEEYFKTVQEGEYQMFDFLQQCLSL 783
++ D ++ + ++GE + +FL + +
Sbjct: 855 QYIGESQGYDIMEPAAKKCYLEREQGEKIIQEFLSKVKQM 894
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer;
HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 340 bits (875), Expect = e-103
Identities = 93/306 (30%), Positives = 158/306 (51%), Gaps = 22/306 (7%)
Query: 454 QAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPC 513
+ + ++ + + + +A DVL+ + S P RP
Sbjct: 686 RRDVSLKDCMRR-LFYNF----DKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPV 740
Query: 514 MKPMGTGSLVLN--QCRHPIVE-LQGGVSYIPNDVYF-------KSGEVSFNLVTGPNMG 563
+ L RHP + G +IPND+ ++G+ LVTGPNMG
Sbjct: 741 ILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMG 800
Query: 564 GKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETA 623
GKST +R G+ +AQ+GC+VP + ++ +D++FTR+GA+D G STF +E+ ETA
Sbjct: 801 GKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETA 860
Query: 624 TVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRV 683
+++ T +SLV++DELGRGT+TFDG +A ++ +ELA + TLF+TH+H +
Sbjct: 861 SILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQ 920
Query: 684 IPTFRNVQVSALEQE-------DNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARD 736
R ++ + + + + LY+ G+C KSYG + A++A PE+++++
Sbjct: 921 NVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHR 980
Query: 737 LMKEYE 742
+E+E
Sbjct: 981 KAREFE 986
Score = 135 bits (342), Expect = 8e-33
Identities = 68/385 (17%), Positives = 129/385 (33%), Gaps = 66/385 (17%)
Query: 56 ETVLVNKSNLSCFSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNL 115
+ + S +S L + E + + T GV VD KF++G+ DD + S
Sbjct: 187 SVLEGDPSE--NYSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRF 244
Query: 116 EAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEF--------------- 160
++ P + L L+ I+ + ++F
Sbjct: 245 RTLVAHYPPVQVLFEKGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEY 304
Query: 161 ----SEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLELMNNEDNMNQ 216
+ + + ++++ SE + L P A L + YL+ + +
Sbjct: 305 FREKLSDGIGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLS 364
Query: 217 F-------------------SIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLG 257
+ + + + +++L + T+ T +LL
Sbjct: 365 MANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIF--LNGTNGSTEGTLLE 422
Query: 258 ILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQ 317
+D C TP G RLL QW+ PL + AI +R A+ L+ + + E L+ LPD++
Sbjct: 423 RVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVEL-LKKLPDLE 481
Query: 318 SLAMRIGRK-----------------------KAGLKDCYRVYEGVSQLPKLISILESLV 354
L +I K + D EG + K+I I+E +
Sbjct: 482 RLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVA 541
Query: 355 QNVEASNLNTILSSLQSLKMMDRKD 379
++ L ++S D
Sbjct: 542 DGFKSKILKQVISLQTKNPEGRFPD 566
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA
binding, DNA repair, mismatch recognition; HET: DNA ADP;
2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12
c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A*
1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Length = 800
Score = 329 bits (846), Expect = e-101
Identities = 106/289 (36%), Positives = 165/289 (57%), Gaps = 10/289 (3%)
Query: 454 QAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPC 513
+A+ E + +++ + + + + + L Q + LA+ DVLV+ A Y P
Sbjct: 519 KALALEKQLYEE-LFDLL----LPHLEALQQSASALAELDVLVNL--AERAYTLNYTCPT 571
Query: 514 MKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG 573
+ + + RHP+VE +I N + S + ++TGPNMGGKSTY+R
Sbjct: 572 FID--KPGIRITEGRHPVVEQVLNEPFIANPLNL-SPQRRMLIITGPNMGGKSTYMRQTA 628
Query: 574 VSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENS 633
+ +A IG +VP I +D+IFTRVGAAD G STFM+EM ETA ++ TE S
Sbjct: 629 LIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYS 688
Query: 634 LVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693
LV++DE+GRGTST+DG +A + A LA+ + TLFATH+ E+ L + NV +
Sbjct: 689 LVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLD 748
Query: 694 ALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
ALE D + ++ V+ G+ KSYG+ A +AG P++++++AR ++E E
Sbjct: 749 ALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 797
Score = 114 bits (288), Expect = 3e-26
Identities = 60/319 (18%), Positives = 126/319 (39%), Gaps = 42/319 (13%)
Query: 56 ETVLVNKSNLSCFSHILCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNL 115
E +L + + ++L I +D G A +D+ + +F + E D + +
Sbjct: 122 EALLQERQD-----NLLAAIWQDS-------KGFGYATLDISSGRFRLSEPADRET---M 166
Query: 116 EAIIVQKSPKECLLPAEYLNDNKNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRF 175
A + + +P E L ++ + L + + R EF + Q +N +F
Sbjct: 167 AAELQRTNPAELLYAEDFAEMS-------LIEGRRGLRRRPLWEFEIDTARQQLNL--QF 217
Query: 176 DDSELKNARLLPEMCLTTATHCLRSLINYLEL--MNNEDNMNQFSIHSIDYSKYVHMSSA 233
+L + A CL + Y + ++ SI + M +A
Sbjct: 218 GTRDLVGFGVENAPRGLCAAGCL---LQYAKDTQRTTLPHIR--SITMEREQDSIIMDAA 272
Query: 234 VMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVN 293
+L + + + ++L +LD TP G R+L +W+ P++D ++ER +
Sbjct: 273 TRRNLEIT---QNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIG 329
Query: 294 ILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESL 353
L + L LR + D++ + R+ + A +D R+ QLP+L + LE++
Sbjct: 330 ALQDF---TAGLQP-VLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLETV 385
Query: 354 VQNVEASNLNTILSSLQSL 372
+++ + + +
Sbjct: 386 ----DSAPVQALREKMGEF 400
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B*
3thy_B* 3thz_B*
Length = 918
Score = 325 bits (835), Expect = 2e-98
Identities = 104/322 (32%), Positives = 162/322 (50%), Gaps = 28/322 (8%)
Query: 454 QAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKP-YVRP 512
Q + +E+ + + +L + LA D + S + A + Y RP
Sbjct: 582 QLVLDCSAEWLD-FLEKF----SEHYHSLCKAVHHLATVDCIFSLA---KVAKQGDYCRP 633
Query: 513 CMKPMGTGSLVLNQCRHPIVE--LQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIR 570
++ +V+ RHP+++ L Y+PN+ ++TGPNMGGKS+YI+
Sbjct: 634 TVQE--ERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIK 691
Query: 571 SIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCT 630
+ + +AQIG +VP + ATI +VD IFTR+GAAD+ Y+G STFM E+ +TA +I+K T
Sbjct: 692 QVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKAT 751
Query: 631 ENSLVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPT-FRN 689
SLVI+DELGRGTST DG +A + + TLF TH+ + L + N
Sbjct: 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGN 811
Query: 690 VQV--------------SALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQAR 735
+ +A + D + LYQ+ G +SYG++ AK+A P ++L++A
Sbjct: 812 YHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAA 871
Query: 736 DLMKEYEYSLDTKTPSGDETNN 757
KE E ++TK
Sbjct: 872 HKSKELEGLINTKRKRLKYFAK 893
Score = 138 bits (349), Expect = 1e-33
Identities = 61/312 (19%), Positives = 125/312 (40%), Gaps = 13/312 (4%)
Query: 72 LCVISEDKTLETVLTNTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPA 131
+ E+ + +G+ V T + D S LE + P E LLP+
Sbjct: 155 ISENKENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPS 214
Query: 132 EYLNDN----KNKIVTILDRNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLP 187
+ +++ + F Q V D ++K ++++
Sbjct: 215 ALSEQTEALIHRATSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIIS 274
Query: 188 EMCLTT--ATHCLRSLINYLELMNNEDNMN-QFSIHSIDY-SKYVHMSSAVMSSLHVLPQ 243
+ L ++I YL+ N E ++ + + +++ ++ + +L +L
Sbjct: 275 GIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMTINGTTLRNLEIL-- 332
Query: 244 QGSTSAQTYDSLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVN-ILVNNTEAR 302
Q T +T SLL +LD +T G R L +W+ QPL L I R AV+ +L + +
Sbjct: 333 QNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVF 392
Query: 303 MNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLIS-ILESLVQNVEASN 361
+ + LR LPD++ I KK ++ + + + + L I+ ++ ++++
Sbjct: 393 GQIENH-LRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQSDL 451
Query: 362 LNTILSSLQSLK 373
L T++ + L
Sbjct: 452 LRTVILEIPELL 463
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein,
mostly mixed alpha-beta structures, one domain is
entirely helical; HET: DNA; 2.20A {Thermus aquaticus}
SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A*
1fw6_A* 1ewr_A*
Length = 765
Score = 318 bits (817), Expect = 5e-97
Identities = 111/289 (38%), Positives = 167/289 (57%), Gaps = 19/289 (6%)
Query: 454 QAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKPYVRPC 513
+RE E + + E + L + + +LA+ DV + A YVRP
Sbjct: 494 LIRRREEEVFLE-VRERA----KRQAEALREAARILAELDVYAAL--AEVAVRYGYVRPR 546
Query: 514 MKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG 573
L + RHP+VE + ++PND+ + E+ L+TGPNM GKST++R
Sbjct: 547 F----GDRLQIRAGRHPVVERR--TEFVPNDLEM-AHELV--LITGPNMAGKSTFLRQTA 597
Query: 574 VSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENS 633
+ LAQ+G FVP + A + + D I+TR+GA+D G STFM+EM+E A ++K+ TENS
Sbjct: 598 LIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENS 657
Query: 634 LVIIDELGRGTSTFDGFGMACSIARELASHRQPFTLFATHFHEIALLSRVIPTFRNVQVS 693
LV++DE+GRGTS+ DG +A ++A L R +TLFATH+ E+ L +P +N+ V+
Sbjct: 658 LVLLDEVGRGTSSLDGVAIATAVAEALHERR-AYTLFATHYFELTALG--LPRLKNLHVA 714
Query: 694 ALEQEDNLVLLYQVKPGSCVKSYGVHCAKMAGYPEDMLEQARDLMKEYE 742
A E+ LV +QV PG KSYGV A MAG P++++ +AR L++
Sbjct: 715 AREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMA 763
Score = 111 bits (281), Expect = 2e-25
Identities = 51/272 (18%), Positives = 93/272 (34%), Gaps = 44/272 (16%)
Query: 87 NTVGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKECLLPAEYLNDNKNKIVTILD 146
+ G+A +D+ T +F + L + + P E LL E L +
Sbjct: 141 DGWGLAFLDVSTGEFKGTVLKSKSA---LYDELFRHRPAEVLLAPELLEN---------- 187
Query: 147 RNKVCMTGRKKNEFSEEDLMQDVNRLVRFDDSELKNARLLPEMCLTTATHCLRSLINYLE 206
++ + + ++ + P +L+ Y +
Sbjct: 188 ------------GAFLDEFRKRFPVM--LSEAPFEPEGEGPLALRRARG----ALLAYAQ 229
Query: 207 LMNNEDNMNQFSIHSIDY---SKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCR 263
S+ + ++ + A + +L V + D+L +LD R
Sbjct: 230 ----RTQGGALSLQPFRFYDPGAFMRLPEATLRALEVF-----EPLRGQDTLFSVLDETR 280
Query: 264 TPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRI 323
T G RLL W++ PL D + R V V R + L L D++ LA R+
Sbjct: 281 TAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRR-LLYRLADLERLATRL 339
Query: 324 GRKKAGLKDCYRVYEGVSQLPKLISILESLVQ 355
+A KD + + LP+L ++L V
Sbjct: 340 ELGRASPKDLGALRRSLQILPELRALLGEEVG 371
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.8 bits (162), Expect = 2e-11
Identities = 93/615 (15%), Positives = 197/615 (32%), Gaps = 175/615 (28%)
Query: 281 DLDAIVERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGV 340
D + ++ +IL +A ++ + + + DM + K + + V
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVD--NFDCKDVQDM----PKSILSKEEIDHIIMSKDAV 61
Query: 341 SQLPKLISILES--------LVQNVEASNLNTILSSLQSLKMMDRKDAVMDKMKEYLEST 392
S +L L S V+ V N ++S +++ +++ M + Y+E
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT----EQRQPSMM-TRMYIEQR 116
Query: 393 ARRLNLVADKTIKLENSPQGFA-YRIT-----MKLNNSI----DDRYTILDTVRG-G--V 439
R L N Q FA Y ++ +KL ++ + ++D V G G
Sbjct: 117 DR-----------LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 440 RFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQT----LNQLSDVLAQFDVL 495
+A +Q + + ++ ++ + L L +L Q D
Sbjct: 166 ------VALDVCLSYKVQCKMD-------FKIFWLNLKNCNSPETVLEMLQKLLYQID-- 210
Query: 496 VSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPN------DVYFKS 549
+ L ++ + + L Y N +V +
Sbjct: 211 -----------PNWTSRS-DHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQ--N 255
Query: 550 GEV--SFN-----LVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRV 602
+ +FN L+T T R V+ FL +AT + + +
Sbjct: 256 AKAWNAFNLSCKILLT--------T--RFKQVTDFL---------SAATTTHISLDHHSM 296
Query: 603 GAADSQYRGISTFMMEMKETATVIKKCTENSLVI--IDELGR-GTSTFDGF----GMACS 655
+ + + ++ + + T N + I E R G +T+D + +
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 656 IARELASHRQPFTLFATHFHEIALLSR-V-IPTFRNVQV-----SALEQEDNLVLLYQVK 708
E + + + F +++ IPT + + + D +V++ ++
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT----ILLSLIWFDVIKSDVMVVVNKLH 412
Query: 709 PGSCVK------SYGVHCAKMAGYPEDM-LEQARDLMKEYE--------YSLDTKTPSGD 753
S V+ + + + LE L EY Y++ S D
Sbjct: 413 KYSLVEKQPKESTISIP---------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 754 ETNNREEEYF--------KTVQEGE--------YQMFDFLQQ--CLSLSKQKDTNRILH- 794
++YF K ++ E + F FL+Q + + IL+
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 795 LQETQEPGIEEYQSF 809
LQ+ ++ Y+ +
Sbjct: 524 LQQ-----LKFYKPY 533
Score = 55.6 bits (133), Expect = 6e-08
Identities = 81/490 (16%), Positives = 149/490 (30%), Gaps = 154/490 (31%)
Query: 94 VDLDTKKF---YMGEIPD--DDYYSNLEAIIVQKSPKECLLPAEY--------------- 133
+D +T + Y + D + N + VQ PK L E
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 134 ----LNDNKNKIV-----TILDRN---------KVCM-TGRKKNEFSEE-DLMQDVNRLV 173
L + ++V +L N + E+ D + + N++
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 174 ------RFDD-SELKNA--RLLPE-------M------CLTTATHCLRSL---------I 202
R +L+ A L P + + S I
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV--CLSYKVQCKMDFKI 184
Query: 203 NYLELMN-NEDN----MNQFSIHSID--YSKYVHMSSAVMSSLHVLPQQGST--SAQTY- 252
+L L N N M Q ++ ID ++ SS + +H + + ++ Y
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 253 DSLLGILD-------------RCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNT 299
+ LL +L C+ LL KQ L A H +++
Sbjct: 245 NCLL-VLLNVQNAKAWNAFNLSCKI-----LLTTRFKQVTDFLSAATTTHISLD------ 292
Query: 300 EARMNLHEYALRGLPDMQSLAMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQN--- 356
M L ++ L L + + L E ++ P+ +SI+ +++
Sbjct: 293 HHSMTLTPDEVKSL-----LLKYLDCRPQDLPR-----EVLTTNPRRLSIIAESIRDGLA 342
Query: 357 -------VEASNLNTIL-SSLQSLKMMD-----------RKDA-VMDKMKEYL--ESTAR 394
V L TI+ SSL L+ + A + + + +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 395 RLNLVADKTIK---LENSPQGFAYRI---TMKLNNSIDDRYT----ILDTVRGGVRF-QD 443
+ +V +K K +E P+ I ++L +++ Y I+D F D
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 444 DRLATANTQY 453
D + QY
Sbjct: 463 DLIPPYLDQY 472
Score = 30.2 bits (67), Expect = 3.5
Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
Query: 728 EDMLEQARDLMKEYEYSLDTKTPSGDET---------NNREEEYFKTVQEGEYQMFDFLQ 778
+D+ + + ++ + E + + +EE K V+E + FL
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 779 QCLSL-SKQKDTNRILHLQETQEPGIEEYQSFDKVH 813
+ +Q +++ E ++ + Q F K +
Sbjct: 96 SPIKTEQRQPSMMTRMYI-EQRDRLYNDNQVFAKYN 130
Score = 30.2 bits (67), Expect = 3.8
Identities = 6/53 (11%), Positives = 20/53 (37%), Gaps = 11/53 (20%)
Query: 2 KFYLFF-------FPQKSKTTIRFFNRVEFYCVHGEDAELIQR----KSNVVY 43
KFY + + + + F ++E + + +L++ + ++
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.2 bits (161), Expect = 4e-11
Identities = 70/463 (15%), Positives = 149/463 (32%), Gaps = 179/463 (38%)
Query: 341 SQLPKLISILESLVQNVEAS-----NLNTILSSLQSLKMMDRKDAVMDKMKEYLES--TA 393
S++ + +L + E +++ + + L D + K KE +++ TA
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ-----ENDTTLVKTKELIKNYITA 129
Query: 394 RRLNLVADKTI-KLENSPQGFAYRITMKLNNSIDDR----YTILDTVRGGVRFQDDRLAT 448
R ++A + K NS L ++ + I GG Q
Sbjct: 130 R---IMAKRPFDKKSNSA----------LFRAVGEGNAQLVAIF----GG---Q----GN 165
Query: 449 ANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDVLAQFDVLVSFSIASTCAPKP 508
+ ++ ++ Y+T+ +V ++I SA +TL++L + A K
Sbjct: 166 TDDYFEELRDLYQTYH-VLVGDLIKFSA---ETLSELIR-------------TTLDAEKV 208
Query: 509 YVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNL----------VT 558
+ + G +L +P S P+ Y S +S L VT
Sbjct: 209 FTQ--------GLNILEWLENP--------SNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 559 GPNMG-----------GKSTYIRSIGVSVFLAQIGCFVPCDS------ATISVVDQIFTR 601
+G G + + + + +V +A+ DS + + +F
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE------TDSWESFFVSVRKAITVLF-F 305
Query: 602 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGM-ACS-IARE 659
+G + ++ ++++ EN G + M + S + +E
Sbjct: 306 IGVRCYEAYPNTSL------PPSILEDSLEN--------NEGVPSP----MLSISNLTQE 347
Query: 660 -LASHRQPFTLFATHFHEIALLSRVIPTFRNVQVSALEQEDNLVLLYQVKPGSCVKSYGV 718
+ + + + +P + V++S + NLV+
Sbjct: 348 QVQDY-------------VNKTNSHLPAGKQVEISLVNGAKNLVV--------------- 379
Query: 719 HCAKMAGYPEDMLEQARDLMKEYEYSLDT-----KTPSGDETN 756
+G P+ + Y L+ K PSG + +
Sbjct: 380 -----SGPPQSL------------YGLNLTLRKAKAPSGLDQS 405
Score = 54.7 bits (131), Expect = 1e-07
Identities = 100/592 (16%), Positives = 173/592 (29%), Gaps = 187/592 (31%)
Query: 32 AELIQRKSNVVYL--VKTMGQKDKTLETVLVNKSNLSCF-SHILCVISEDKTLETVLTNT 88
AEL+ + +L V ++ + K + V L+ F + L D + +
Sbjct: 58 AELVGK-----FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE--GND--IHALAAKL 108
Query: 89 VGVAIVDLDTKKFYMGEIPDDDYYSNLEAIIVQKSPKE-----CLLPAEYLNDNKNKIVT 143
+ L K + +Y A I+ K P + L A + + ++V
Sbjct: 109 LQENDTTLVKTKELI-----KNYI---TARIMAKRPFDKKSNSALFRA--VGEGNAQLVA 158
Query: 144 ILDRNKVCMTGRKKNE--FSEEDLMQD--------VNRLVRFDDSELKNARLLPEMCLTT 193
I G+ + F E ++D V L++F L L L
Sbjct: 159 I-------FGGQGNTDDYFEE---LRDLYQTYHVLVGDLIKFSAETLSE---LIRTTLDA 205
Query: 194 ATHCLRSLINYLELMNNEDNMNQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYD 253
+ L N LE + N + DY + S +S P G Y
Sbjct: 206 EKVFTQGL-NILEWLENPS-----NTPDKDY-----LLSIPIS----CPLIGVIQLAHYV 250
Query: 254 SLLGILDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGL 313
+L TP R + + +V AV I ++ + + +
Sbjct: 251 VTAKLLGF--TPGELRSYLKGATGHSQG---LV---TAVAIAETDSWE--SFFVSVRKAI 300
Query: 314 PDMQSLAMRIG-RKKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNTILSSLQSL 372
++ IG R CY Y + LP SILE ++N E + S
Sbjct: 301 ----TVLFFIGVR-------CYEAY-PNTSLP--PSILEDSLENNE-----GVPSP---- 337
Query: 373 KMMDRKDAVMDKMKEYLESTARRLN--LVADKT--IKLENSPQGFAYRITMKLNNSIDDR 428
M+ ++ + +E ++ + N L A K I L N +
Sbjct: 338 -ML----SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL--------------- 377
Query: 429 YTILDTVRGGVRFQDDRLATANTQYQAIQREYETHQQSIVEEVIGISAGYTQTLNQLSDV 488
V G + L N + + Q I +++ +
Sbjct: 378 -----VVSGPPQ----SLYGLNLTLRKAKAPSGLDQSRI---------PFSE---RKLKF 416
Query: 489 LAQFDVLVSFSIASTCAPKPYVRPCMKPMGTGSLVLNQCRHPIVELQGGVSYIPNDVYFK 548
+F L +AS P+ + P L+ V IP VY
Sbjct: 417 SNRF--LP---VAS-----PFHSHLLVP--ASDLINKDLVKNNVSFNAKDIQIP--VY-- 460
Query: 549 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFT 600
+ G ++ R + S + +VD I
Sbjct: 461 ------DTFDGSDL-------RVLS--------------GSISERIVDCIIR 485
Score = 48.1 bits (114), Expect = 1e-05
Identities = 53/314 (16%), Positives = 103/314 (32%), Gaps = 119/314 (37%)
Query: 43 YLV--KTMGQKDKTLETVLVNKSNLSCFSHIL--CVISEDKTLETVLTNTVGVAIVDLDT 98
Y+V K +G L + L K ++ I+E + E+ + AI L
Sbjct: 249 YVVTAKLLGFTPGELRSYL--KGATGHSQGLVTAVAIAETDSWESFFVSVRK-AITVL-- 303
Query: 99 KKFYMG-----EIPDDDYYSNLEAIIVQKS-----------------PKECL-------- 128
F++G P+ ++L I++ S +E +
Sbjct: 304 --FFIGVRCYEAYPN----TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 129 --LPAE---YL---NDNKNKIVT--------------------ILDRNKVCMTGRK---K 157
LPA + N KN +V+ LD++++ + RK
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS 417
Query: 158 NEF--------------SEEDLMQDVNRL-VRFDDSELKNARLLPEMCLTTATHCLRSLI 202
N F + + + +D+ + V F+ +++ +P + LR L
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ----IPVYDTFDGSD-LRVL- 471
Query: 203 NYLELMNNEDNMNQFSIHSIDYSKYVHMSSAV-MSSLHVL---PQQGSTSAQTYDSLLGI 258
++++ + I V + + H+L P G S LG+
Sbjct: 472 --------SGSISERIVDCI-IRLPVKWETTTQFKATHILDFGP--GGASG------LGV 514
Query: 259 L-DRCRTPQGHRLL 271
L R + G R++
Sbjct: 515 LTHRNKDGTGVRVI 528
Score = 43.1 bits (101), Expect = 4e-04
Identities = 53/326 (16%), Positives = 110/326 (33%), Gaps = 100/326 (30%)
Query: 103 MGEIPDDDYYSNLEAIIVQKSPKECLLPA-EYLNDNKN-KIVTILDRNKVCMT---GRKK 157
MG D Y +A ++ A + D I+ I+ N V +T G +K
Sbjct: 1631 MGM----DLYKTSKAA------QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 158 NEFSEEDLMQDVNRLVRFD---DSELKNARLLPEMCLTTATHCLRSLINYLELMNNEDNM 214
+ E+ + F+ D +LK ++ E+ + ++ RS L
Sbjct: 1681 GKRIRENYSA-----MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF---- 1731
Query: 215 NQFSIHSIDYSKYVHMSSAVMSSLHVLPQQGSTSAQTYDSLLGILDRCRTPQGHRL---- 270
Q ++ ++ + + + S ++P +T A GH L
Sbjct: 1732 TQPALTLMEKAAF-----EDLKSKGLIPA-DATFA-----------------GHSLGEYA 1768
Query: 271 ----LAQWMKQPLKDLDAIV-ERHAAVNILVNNTEARMNLHEYALRGLPDMQSLAMRIGR 325
LA M ++ L +V R + + V E R M +A+ GR
Sbjct: 1769 ALASLADVM--SIESLVEVVFYRGMTMQVAVPRDEL--------GRSNYGM--IAINPGR 1816
Query: 326 KKAGLKDCYRVYEGVSQLPKLISILESLVQNVEASNLNT-------------------IL 366
A E + + + + + VE N N +L
Sbjct: 1817 VAASFSQ-----EALQYVVERVGKRTGWL--VEIVNYNVENQQYVAAGDLRALDTVTNVL 1869
Query: 367 SSL--QSLKMMDRKDAV-MDKMKEYL 389
+ + Q + +++ + ++ +++++ +L
Sbjct: 1870 NFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 40.0 bits (93), Expect = 0.003
Identities = 37/245 (15%), Positives = 77/245 (31%), Gaps = 72/245 (29%)
Query: 370 QSLKM-MDRKD------AVMDKMKEYLESTA--RRLNLVAD----KTIKLENSPQGFAYR 416
Q M MD V ++ + + T L++V + TI +G R
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI-HFGGEKGKRIR 1685
Query: 417 ---ITMKLNNSIDDR------YTILDTVRGGVRFQDDR--L-ATANTQ----------YQ 454
M +D + + ++ F+ ++ L AT TQ ++
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 455 AIQREYETHQQSIVEEVIGISAG-----YTQTLNQLSDVLAQF-DV--LVSF--SIASTC 504
++ + + AG Y L L+DV++ + +V +
Sbjct: 1746 DLKSKGLIPADATF-------AGHSLGEYA-ALASLADVMS-IESLVEVVFYRGMTMQVA 1796
Query: 505 APK------PY----VRP-CMKPMGTGSLVLNQCRHPIVELQGG----VSY-IPNDVYFK 548
P+ Y + P + + + + + G V+Y + N Y
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER-VGKRTGWLVEIVNYNVENQQYVA 1855
Query: 549 SGEVS 553
+G++
Sbjct: 1856 AGDLR 1860
Score = 31.2 bits (70), Expect = 2.1
Identities = 43/306 (14%), Positives = 96/306 (31%), Gaps = 90/306 (29%)
Query: 244 QGSTSAQTYDSLLGI-LDRCRTPQGHRLLAQWMKQPLKDLDAIVERHAAVNIL--VNNTE 300
QGS Q G+ +D +T + + + W D + +IL V N
Sbjct: 1624 QGS---QE----QGMGMDLYKTSKAAQDV--W-----NRADNHFKDTYGFSILDIVINNP 1669
Query: 301 ARMNLHEYALRGLPDMQSL-----AMRIGRKKAGLKDCYRVYEGVSQLPKLISILESLVQ 355
+ +H +G + + AM G ++++ +++ S
Sbjct: 1670 VNLTIHFGGEKG----KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY-TFRS--- 1721
Query: 356 NVEASNL----NT---ILS-SLQSLKMMDRKDAVMDKMK--------EY--LESTARRLN 397
E L T + + + + + ++ EY L S A ++
Sbjct: 1722 --EKGLLSATQFTQPALTLMEKAAFEDL-KSKGLIPADATFAGHSLGEYAALASLADVMS 1778
Query: 398 LVADKTIKLENSPQGFAYR-----ITMKLNNSIDDRYTI--LDTVRGGVRFQDDRLATAN 450
+ +++ YR + + + Y + ++ R F + L
Sbjct: 1779 I-ES-LVEV------VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL---- 1826
Query: 451 TQYQAIQREYETHQQSIVE--------EVIGISAGYTQTLNQLSDVLAQF--------DV 494
Q + +VE + ++AG + L+ +++VL ++
Sbjct: 1827 ---QYVVERVGKRTGWLVEIVNYNVENQQY-VAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
Query: 495 LVSFSI 500
S S+
Sbjct: 1883 QKSLSL 1888
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.4 bits (86), Expect = 0.009
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 732 EQARDLMKEYEYSLDTKTPSGDETNNREEEYFKTVQEGEYQMFDFL-QQCLSLSKQKDTN 790
E R +E L D + E+ + ++ + + ++ +Q + K K N
Sbjct: 85 ESIRKWREEQRKRLQEL----DAASKVMEQ--EWREKAKKDLEEWNQRQSEQVEKNKINN 138
Query: 791 RILHLQETQEP 801
RI Q+P
Sbjct: 139 RIADKAFYQQP 149
Score = 30.1 bits (67), Expect = 1.8
Identities = 5/43 (11%), Positives = 17/43 (39%)
Query: 728 EDMLEQARDLMKEYEYSLDTKTPSGDETNNREEEYFKTVQEGE 770
++ E+A+ ++E+ + N ++ F + +
Sbjct: 110 QEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.021
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 24/48 (50%)
Query: 276 KQPLKDLDAIVERHAAVNILVNNTEARMNLHEYALRGLPD-MQSLAMR 322
KQ LK L +A + L YA D +LA++
Sbjct: 19 KQALKKL-----------------QASLKL--YA----DDSAPALAIK 43
Score = 33.4 bits (75), Expect = 0.14
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 23/51 (45%)
Query: 370 QSLKMMDRKDAVMDKMKEYLESTARRLNLVADKTIKLENSPQGFAYRITMK 420
Q+LK K L++ L L AD +++P A + TM+
Sbjct: 20 QALK------------K--LQA---SLKLYAD-----DSAP-ALAIKATME 47
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 35.0 bits (80), Expect = 0.044
Identities = 21/139 (15%), Positives = 39/139 (28%), Gaps = 25/139 (17%)
Query: 556 LVTGPNMGGKSTYIRSIGVSVFLAQIGCFV---------------------PCDSATISV 594
++TG GK+T ++ I V + F S
Sbjct: 4 IITGEPGVGKTTLVKKI-VERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 595 VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMAC 654
VG+ + + + E A K ++IIDE+G+ F
Sbjct: 63 FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKF---R 119
Query: 655 SIARELASHRQPFTLFATH 673
+ R++ +
Sbjct: 120 DLVRQIMHDPNVNVVATIP 138
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger,
transcription activator; 3.00A {Escherichia coli} SCOP:
e.64.1.1
Length = 192
Score = 29.2 bits (65), Expect = 3.8
Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 316 MQSLAMRIGRKKAGLKDCYRVYEGVS----QLPKLISILESLVQNVEASNLNTILSSLQS 371
+Q L + L Y+ G LP + QNV AS L
Sbjct: 26 LQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK 85
Query: 372 LKMMDRKDAVMDKMKEYLESTAR 394
+ + DAV+ + YLE +
Sbjct: 86 TGLCNGVDAVIKAYRLYLEQCPQ 108
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 28.7 bits (65), Expect = 6.1
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 281 DLDAIVERHAAVNILVNN 298
+ A++E +++LV+
Sbjct: 56 EAKALLEEAGPLDLLVHA 73
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 28.3 bits (64), Expect = 9.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 280 KDLDAIVERHAAVNILVNNT 299
KDLD + E+ V+ILV N
Sbjct: 70 KDLDLLFEKVKEVDILVLNA 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.381
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,851,602
Number of extensions: 714036
Number of successful extensions: 1934
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1890
Number of HSP's successfully gapped: 44
Length of query: 813
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 712
Effective length of database: 3,881,772
Effective search space: 2763821664
Effective search space used: 2763821664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)