BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy529
         (338 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EJX|A Chain A, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 pdb|3EJX|B Chain B, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 pdb|3EJX|C Chain C, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 pdb|3EJX|D Chain D, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 pdb|3EJX|E Chain E, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 pdb|3EJX|F Chain F, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 pdb|3EKM|A Chain A, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 pdb|3EKM|B Chain B, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 pdb|3EKM|C Chain C, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 pdb|3EKM|D Chain D, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 pdb|3EKM|E Chain E, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 pdb|3EKM|F Chain F, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
          Length = 317

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 153 AELTRLPGKHFLVLHRGTTIHITQNQQIGNEEVDRG 188
           AEL  L GKH   +H G  + + + Q  G  +VD G
Sbjct: 111 AELENLQGKHSFTIHTGAGLIVPEIQDDGQVKVDMG 146


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,993,365
Number of Sequences: 62578
Number of extensions: 382092
Number of successful extensions: 568
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 566
Number of HSP's gapped (non-prelim): 3
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)