BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy529
         (338 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A7ZE26|HLDE_CAMC1 Bifunctional protein HldE OS=Campylobacter concisus (strain 13826)
           GN=hldE PE=3 SV=1
          Length = 472

 Score = 34.3 bits (77), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 6/79 (7%)

Query: 163 FLVLHRGTTIHITQNQQIGNEEVDRGANRDTHTQAIN-----ICSPDDLKTMVKKLAYNN 217
           F +LH G   ++ + +++G+  V  G N D   + +      I S DD   ++  L + +
Sbjct: 345 FDILHAGHVKYLARARELGDLLV-VGLNSDASVKRLKGEARPINSQDDRACVLSGLGFVD 403

Query: 218 WQVLWNQTDPLNKLKQIKP 236
           + V++++  PLN + +IKP
Sbjct: 404 YVVIFDEDTPLNLITKIKP 422


>sp|P16466|HLYA_PROMI Hemolysin OS=Proteus mirabilis GN=hpmA PE=1 SV=1
          Length = 1577

 Score = 31.6 bits (70), Expect = 9.3,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 107 TRLPGKHFLVLHRDTTIQITQNQQIAPQFSFKSNSRPSAYKADVLPAELTRLPGKHFLVL 166
           T +  + F     D T +  Q QQI  Q   K+N+  +A K DV   +  ++   + L +
Sbjct: 366 TDIDNRWFYSWKYDVTKEKEQIQQIGSQIDAKNNATLTATKGDV-TLDAAKINAGNNLAI 424

Query: 167 HRGTTIHITQNQQIGNEEVDRGANRDTHT 195
           +    IHI  N  +  E      N+  HT
Sbjct: 425 NANKDIHI--NGLVEKESRSENGNKRNHT 451


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,395,142
Number of Sequences: 539616
Number of extensions: 5617543
Number of successful extensions: 9923
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9922
Number of HSP's gapped (non-prelim): 6
length of query: 338
length of database: 191,569,459
effective HSP length: 118
effective length of query: 220
effective length of database: 127,894,771
effective search space: 28136849620
effective search space used: 28136849620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)