Query psy529
Match_columns 338
No_of_seqs 187 out of 410
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 22:47:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.6 6.5E-16 2.2E-20 133.1 5.7 101 86-195 40-151 (154)
2 3p1g_A Xenotropic murine leuke 99.5 3.2E-15 1.1E-19 131.3 3.7 95 89-196 56-157 (165)
3 1jl1_A Ribonuclease HI; RNAse 99.5 1.1E-14 3.8E-19 125.9 2.3 96 92-198 40-146 (155)
4 3h08_A RNH (ribonuclease H); R 99.5 7.1E-15 2.4E-19 125.3 1.0 91 93-194 41-143 (146)
5 3qio_A GAG-POL polyprotein; RN 99.4 1.7E-14 5.7E-19 124.7 2.4 91 92-195 45-147 (150)
6 2e4l_A Ribonuclease HI, RNAse 99.4 2.7E-14 9.3E-19 123.9 1.6 92 93-195 43-145 (158)
7 2kq2_A Ribonuclease H-related 99.4 6.1E-14 2.1E-18 120.4 0.6 90 93-195 47-137 (147)
8 1ril_A Ribonuclease H; hydrola 99.3 9.3E-14 3.2E-18 121.6 -0.0 92 93-195 45-148 (166)
9 2lsn_A Reverse transcriptase; 99.3 3.4E-13 1.2E-17 118.5 1.1 93 92-193 52-161 (165)
10 2zd1_A Reverse transcriptase/r 99.0 7.2E-11 2.5E-15 120.9 3.4 84 92-192 472-557 (557)
11 1mu2_A HIV-2 RT; HIV-2 reverse 99.0 9E-11 3.1E-15 120.1 3.6 86 92-193 469-555 (555)
12 2ehg_A Ribonuclease HI; RNAse 98.9 4.7E-10 1.6E-14 95.4 3.3 89 92-194 44-133 (149)
13 3u3g_D Ribonuclease H, RNAse H 98.8 3.8E-10 1.3E-14 93.7 0.7 91 93-194 42-136 (140)
14 3hst_B Protein RV2228C/MT2287; 98.7 2.7E-09 9.4E-14 89.0 1.2 91 93-195 43-133 (141)
15 1qhk_A RNAse HI, protein (ribo 98.2 6.3E-08 2.2E-12 67.9 -1.6 33 13-48 14-46 (47)
16 3bsu_A Ribonuclease H1, RNAse 98.2 9.3E-08 3.2E-12 68.7 -2.1 35 13-50 16-50 (53)
17 1zbf_A Ribonuclease H-related 97.4 9.4E-06 3.2E-10 69.3 -2.0 88 93-187 48-139 (142)
18 4htu_A Ribonuclease H, RNAse H 96.4 0.00068 2.3E-08 57.3 0.7 60 93-157 42-104 (134)
19 2l7x_A Envelope glycoprotein; 41.0 8 0.00027 28.8 0.8 22 277-298 31-56 (77)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.59 E-value=6.5e-16 Score=133.13 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=75.5
Q ss_pred eeeecCCCCCccchhhhhHHhchhhhhhHhhhcCCCeEEEEeCCccccccc------cccCCccc----cccccCchhhh
Q psy529 86 FSFKSNSRPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQFS------FKSNSRPS----AYKADVLPAEL 155 (338)
Q Consensus 86 ~~~kl~~~~s~~~AE~~A~el~i~~gl~~a~~~~~~~i~I~sDSq~a~~~~------~k~~s~~~----~~~~~~~~~~l 155 (338)
++..+....+++.||+.| ++.||+.+......+|.|+|||+++++.+ |+.+++.+ ..++..+..++
T Consensus 40 ~~~~l~~~~tn~~aEl~A----~~~aL~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i 115 (154)
T 2qkb_A 40 VGIRLPGRQTNQRAEIHA----ACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVAL 115 (154)
T ss_dssp EEEECCSSCCHHHHHHHH----HHHHHHHHHHTTCCEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHH
T ss_pred EEeecCCCCchHHHHHHH----HHHHHHHHHhCCCceEEEEECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHH
Confidence 566777789999999999 88899999887778999999999998753 34444432 22333333333
Q ss_pred hccCCCccccccceEEEEeCCCCCC-CchhHhhhhcccccc
Q psy529 156 TRLPGKHFLVLHRGTTIHITQNQQI-GNEEVDRGANRDTHT 195 (338)
Q Consensus 156 ~~~~~~~~~~~~~i~~~wip~h~~i-gNe~aD~~a~~a~~~ 195 (338)
..+.. ..+|.|.|||||+|+ |||.||+||++|...
T Consensus 116 ~~l~~-----~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~ 151 (154)
T 2qkb_A 116 ERLTQ-----GMDIQWMHVPGHSGFIGNEEADRLAREGAKQ 151 (154)
T ss_dssp HHHHT-----TCEEEEEECCTTSSCHHHHHHHHHHHHHHTC
T ss_pred HHHHc-----CCceEEEEccCCCCCHhHHHHHHHHHHHHHh
Confidence 33221 246999999999999 999999999998654
No 2
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.52 E-value=3.2e-15 Score=131.34 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=72.9
Q ss_pred ecCCCCCccchhhhhHHhchhhhhhHhhhcCCCeEEEEeCCccccccccccCCccccccccCchhhh-hccCCCcccccc
Q psy529 89 KSNSRPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQFSFKSNSRPSAYKADVLPAEL-TRLPGKHFLVLH 167 (338)
Q Consensus 89 kl~~~~s~~~AE~~A~el~i~~gl~~a~~~~~~~i~I~sDSq~a~~~~~k~~s~~~~~~~~~~~~~l-~~~~~~~~~~~~ 167 (338)
.+....+++.||+.| ++.||+.+ ...+|.|+||||++++.+|.. +....+++..+..++ .++. ...
T Consensus 56 ~~~~~~Tnn~aEl~A----i~~AL~~~---~~~~v~I~tDS~~vi~~iw~~-~~g~~v~n~dl~~~l~~~l~-----~~~ 122 (165)
T 3p1g_A 56 ALPAGTSAQRAELIA----LTQALKMA---EGKKLNVYTDSRYAFATAHVH-SEGREIKNKNEILALLKALF-----LPK 122 (165)
T ss_dssp EECTTCCHHHHHHHH----HHHHHHHT---BTSEEEEEECCHHHHHHHHSC-CCSCCCSSHHHHHHHHHHTT-----SBS
T ss_pred cCCCCCcHHHHHHHH----HHHHHHHc---cCceEEEEEchHHHHhhhhcc-cCCCcccCHHHHHHHHHHHh-----cCC
Confidence 456778999999999 88888887 368999999999999987753 333445555444444 2222 246
Q ss_pred ceEEEEeCCCCC-----C-CchhHhhhhccccccc
Q psy529 168 RGTTIHITQNQQ-----I-GNEEVDRGANRDTHTQ 196 (338)
Q Consensus 168 ~i~~~wip~h~~-----i-gNe~aD~~a~~a~~~~ 196 (338)
+|.|.|||||+| + |||.||++|++|+..+
T Consensus 123 ~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~ 157 (165)
T 3p1g_A 123 RLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp EEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcC
Confidence 799999999999 9 9999999999997543
No 3
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.46 E-value=1.1e-14 Score=125.90 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=69.9
Q ss_pred CCCCccchhhhhHHhchhhhhhHhhhcCCCeEEEEeCCccccccc------cccCCccc----cccccCchhhhhccCCC
Q psy529 92 SRPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQFS------FKSNSRPS----AYKADVLPAELTRLPGK 161 (338)
Q Consensus 92 ~~~s~~~AE~~A~el~i~~gl~~a~~~~~~~i~I~sDSq~a~~~~------~k~~s~~~----~~~~~~~~~~l~~~~~~ 161 (338)
...++..||+.| ++.||+.+.. ..+|.|+|||+++++.+ |+.+++.+ .+++..+...+..+..
T Consensus 40 ~~~tn~~aEl~A----~~~aL~~~~~--~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~- 112 (155)
T 1jl1_A 40 TRTTNNRMELMA----AIVALEALKE--HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG- 112 (155)
T ss_dssp EEECHHHHHHHH----HHHHHHTCCS--CCEEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-
T ss_pred CCCcHHHHHHHH----HHHHHHHhCc--CCcEEEEeCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHc-
Confidence 357899999999 8888888765 37899999999998743 44444432 2333334444443332
Q ss_pred ccccccceEEEEeCCCCCC-CchhHhhhhccccccccc
Q psy529 162 HFLVLHRGTTIHITQNQQI-GNEEVDRGANRDTHTQAI 198 (338)
Q Consensus 162 ~~~~~~~i~~~wip~h~~i-gNe~aD~~a~~a~~~~~~ 198 (338)
...|.|.|||||+|+ |||.||+||+.|...+.+
T Consensus 113 ----~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 113 ----QHQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp ----TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred ----cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 247999999999999 999999999999765543
No 4
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.46 E-value=7.1e-15 Score=125.29 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=64.8
Q ss_pred CCCccchhhhhHHhchhhhhhHhhhcCCCeEEEEeCCccccccc-------cccCCcccc----ccccCchhhhhccCCC
Q psy529 93 RPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQFS-------FKSNSRPSA----YKADVLPAELTRLPGK 161 (338)
Q Consensus 93 ~~s~~~AE~~A~el~i~~gl~~a~~~~~~~i~I~sDSq~a~~~~-------~k~~s~~~~----~~~~~~~~~l~~~~~~ 161 (338)
..++..||+.| ++.||+.+.. ..+|.|+|||+++++.+ |+.+++.+. +.+..+...+..+.
T Consensus 41 ~~Tnn~aEl~A----~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~-- 112 (146)
T 3h08_A 41 ATTNNRMELMA----AIKGLEALKE--PARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLT-- 112 (146)
T ss_dssp EECHHHHHHHH----HHHHHHTCSS--CCEEEEEESCHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHH--
T ss_pred CCcHHHHHHHH----HHHHHHhcCc--cCcEEEEeChHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHH--
Confidence 57899999999 8888888865 57999999999998753 333444322 23333333333322
Q ss_pred ccccccceEEEEeCCCCCC-CchhHhhhhccccc
Q psy529 162 HFLVLHRGTTIHITQNQQI-GNEEVDRGANRDTH 194 (338)
Q Consensus 162 ~~~~~~~i~~~wip~h~~i-gNe~aD~~a~~a~~ 194 (338)
...+|.|.|||||+|+ |||.||+||++|..
T Consensus 113 ---~~~~v~~~~V~gH~g~~~N~~AD~LA~~a~~ 143 (146)
T 3h08_A 113 ---TLHRVTFHKVKGHSDNPYNSRADELARLAIK 143 (146)
T ss_dssp ---HHSEEEEEECCC-CCSHHHHHHHHHHHHHHH
T ss_pred ---hhCceEEEEcCCcCCcHhHHHHHHHHHHHHH
Confidence 2346999999999999 99999999999864
No 5
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.45 E-value=1.7e-14 Score=124.66 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=64.5
Q ss_pred CCCCccchhhhhHHhchhhhhhHhhhcCCCeEEEEeCCccccccc------cccCCcccc----ccccCchhhhhc-cCC
Q psy529 92 SRPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQFS------FKSNSRPSA----YKADVLPAELTR-LPG 160 (338)
Q Consensus 92 ~~~s~~~AE~~A~el~i~~gl~~a~~~~~~~i~I~sDSq~a~~~~------~k~~s~~~~----~~~~~~~~~l~~-~~~ 160 (338)
...++..||+.| ++.||+.+ ..+|.|+|||+++++.+ |+.+++.+. +++..+..++.. +.
T Consensus 45 ~~~Tnn~aEl~A----~i~AL~~~----~~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~- 115 (150)
T 3qio_A 45 TDTTNQKTELQA----IYLALQDS----GLEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLI- 115 (150)
T ss_dssp SSCCHHHHHHHH----HHHHHHHS----CSEEEEEESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHT-
T ss_pred CCCCHHHHHHHH----HHHHHHhC----CCcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHh-
Confidence 578999999999 77888874 58999999999998843 566665532 333334333322 21
Q ss_pred CccccccceEEEEeCCCCCC-CchhHhhhhcccccc
Q psy529 161 KHFLVLHRGTTIHITQNQQI-GNEEVDRGANRDTHT 195 (338)
Q Consensus 161 ~~~~~~~~i~~~wip~h~~i-gNe~aD~~a~~a~~~ 195 (338)
...+|.|.|||||+|+ |||.||+||++|+..
T Consensus 116 ----~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 116 ----KKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp ----TCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred ----hcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 2357999999999999 999999999999754
No 6
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.42 E-value=2.7e-14 Score=123.87 Aligned_cols=92 Identities=17% Similarity=0.098 Sum_probs=67.0
Q ss_pred CCCccchhhhhHHhchhhhhhHhhhcCCCeEEEEeCCccccccc------cccCCccc----cccccCchhhhhccCCCc
Q psy529 93 RPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQFS------FKSNSRPS----AYKADVLPAELTRLPGKH 162 (338)
Q Consensus 93 ~~s~~~AE~~A~el~i~~gl~~a~~~~~~~i~I~sDSq~a~~~~------~k~~s~~~----~~~~~~~~~~l~~~~~~~ 162 (338)
..++..||+.| ++.||+.+.. ..+|.|+|||+++++.+ |+.+++.+ .+++..+...+..+..
T Consensus 43 ~~tn~~aEl~A----~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-- 114 (158)
T 2e4l_A 43 LTTNNRMELLA----PIVALEALKE--PCKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-- 114 (158)
T ss_dssp EECHHHHHHHH----HHHHHHTCSS--CCEEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT--
T ss_pred CCccHHHHHHH----HHHHHHHhcc--CCeEEEEeCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHc--
Confidence 57899999999 8888887754 38999999999998843 33334332 2333333333333221
Q ss_pred cccccceEEEEeCCCCCC-CchhHhhhhcccccc
Q psy529 163 FLVLHRGTTIHITQNQQI-GNEEVDRGANRDTHT 195 (338)
Q Consensus 163 ~~~~~~i~~~wip~h~~i-gNe~aD~~a~~a~~~ 195 (338)
...|.|.|||||+|+ |||.||+||++|...
T Consensus 115 ---~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 115 ---LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp ---TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred ---cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 247999999999999 999999999999765
No 7
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.37 E-value=6.1e-14 Score=120.37 Aligned_cols=90 Identities=9% Similarity=-0.038 Sum_probs=62.8
Q ss_pred CCCccchhhhhHHhchhhhhhHhhhcCCCeEEEEeCCccccccccccCCccccccccCchhhhhccCCCccccccceEEE
Q psy529 93 RPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQFSFKSNSRPSAYKADVLPAELTRLPGKHFLVLHRGTTI 172 (338)
Q Consensus 93 ~~s~~~AE~~A~el~i~~gl~~a~~~~~~~i~I~sDSq~a~~~~~k~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 172 (338)
..+++.||+.| ++.||+.++.... +|.|+|||+.+.+ |-...+... ...+..+..++.... .+|.|.
T Consensus 47 ~~tNn~aEl~A----~~~AL~~a~~~~~-~v~I~tDS~~i~~--w~~~~w~~~---~~~~~~~~~l~~~l~---~~v~~~ 113 (147)
T 2kq2_A 47 TMRNVAGEIAA----ALYAVKKASQLGV-KIRILHDYAGIAF--WATGEWKAK---NEFTQAYAKLMNQYR---GIYSFE 113 (147)
T ss_dssp GTCTTHHHHHH----HHHHHHHHHHHTC-CCCBSSCCSTHHH--HTTSSSSCC---HHHHHHHHCGGGGGS---TTCCBC
T ss_pred cccHHHHHHHH----HHHHHHHHHHCCC-eEEEEECcHHHHH--HHhCCCccC---CcchHHHHHHHHHhc---CCeeEE
Confidence 36899999999 8888998877655 9999999986553 222222211 112222222222211 178999
Q ss_pred EeCCCCCC-CchhHhhhhcccccc
Q psy529 173 HITQNQQI-GNEEVDRGANRDTHT 195 (338)
Q Consensus 173 wip~h~~i-gNe~aD~~a~~a~~~ 195 (338)
|||||+|+ |||.||+||++|...
T Consensus 114 wV~gH~g~~~Ne~AD~LA~~a~~~ 137 (147)
T 2kq2_A 114 KVKAHSGNEFNDYVDMKAKSALGI 137 (147)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred EecCcCCCcchHHHHHHHHHHHhc
Confidence 99999999 999999999999754
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.34 E-value=9.3e-14 Score=121.61 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=66.0
Q ss_pred CCCccchhhhhHHhchhhhhhHhhhcCCCeEEEEeCCccccccc-------cccCCccc----cccccCchhhhhccCCC
Q psy529 93 RPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQFS-------FKSNSRPS----AYKADVLPAELTRLPGK 161 (338)
Q Consensus 93 ~~s~~~AE~~A~el~i~~gl~~a~~~~~~~i~I~sDSq~a~~~~-------~k~~s~~~----~~~~~~~~~~l~~~~~~ 161 (338)
..++..||+.| ++.||+.+... .+|.|+|||+++++.+ |+.+++.+ .+++..+...+..+..
T Consensus 45 ~~Tnn~aEl~A----i~~AL~~~~~~--~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~- 117 (166)
T 1ril_A 45 CTTNNRMELKA----AIEGLKALKEP--CEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA- 117 (166)
T ss_dssp EECHHHHHHHH----HHHHHHSCCSC--CEEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT-
T ss_pred CCcHHHHHHHH----HHHHHHHhccC--CeEEEEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHh-
Confidence 57899999999 88888877543 5899999999998743 23333332 2333333333433321
Q ss_pred ccccccceEEEEeCCCCCC-CchhHhhhhcccccc
Q psy529 162 HFLVLHRGTTIHITQNQQI-GNEEVDRGANRDTHT 195 (338)
Q Consensus 162 ~~~~~~~i~~~wip~h~~i-gNe~aD~~a~~a~~~ 195 (338)
...|.|.|||||+|+ |||.||+||++|...
T Consensus 118 ----~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 148 (166)
T 1ril_A 118 ----PHRVRFHFVKGHTGHPENERVDREARRQAQS 148 (166)
T ss_dssp ----TSEEECCCCCGGGSCTHHHHHHHHHHHHHTS
T ss_pred ----cCeEEEEEeeCCCCchhHHHHHHHHHHHHHH
Confidence 247899999999999 999999999999654
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.30 E-value=3.4e-13 Score=118.48 Aligned_cols=93 Identities=14% Similarity=0.017 Sum_probs=64.7
Q ss_pred CCCCccchhhhhHHhchhhhhhHhhhcCCCeEEEEeCCccccccc------cccCCccc----cccccCchhhhhccCCC
Q psy529 92 SRPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQFS------FKSNSRPS----AYKADVLPAELTRLPGK 161 (338)
Q Consensus 92 ~~~s~~~AE~~A~el~i~~gl~~a~~~~~~~i~I~sDSq~a~~~~------~k~~s~~~----~~~~~~~~~~l~~~~~~ 161 (338)
+..+...||+.| +..|++.++.. ..+|.|+|||+|+++.+ |+.++|.+ ++++..+...|.++.
T Consensus 52 nn~te~~Aei~A----l~~al~~al~~-~~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~-- 124 (165)
T 2lsn_A 52 GNHTAQMAEIAA----VEFACKKALKI-PGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECL-- 124 (165)
T ss_dssp SSCCHHHHHHHH----HHHHHHHHHHS-SSCEEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHH----HHHHHHHHhcC-CCeEEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHH--
Confidence 456677788888 54556666544 46799999999998853 66555543 345554544443321
Q ss_pred ccccccceEEEEeCCCCC------C-CchhHhhhhcccc
Q psy529 162 HFLVLHRGTTIHITQNQQ------I-GNEEVDRGANRDT 193 (338)
Q Consensus 162 ~~~~~~~i~~~wip~h~~------i-gNe~aD~~a~~a~ 193 (338)
....+|.|.|||||+| . |||.||+||++++
T Consensus 125 --~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA 161 (165)
T 2lsn_A 125 --SMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGS 161 (165)
T ss_dssp --HHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred --hCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhh
Confidence 1235799999999998 4 6999999999875
No 10
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.03 E-value=7.2e-11 Score=120.94 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=58.8
Q ss_pred CCCCccchhhhhHHhchhhhhhHhhhcCCCeEEEEeCCccccccccccCCccccccccCchhhhh-ccCCCccccccceE
Q psy529 92 SRPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQFSFKSNSRPSAYKADVLPAELT-RLPGKHFLVLHRGT 170 (338)
Q Consensus 92 ~~~s~~~AE~~A~el~i~~gl~~a~~~~~~~i~I~sDSq~a~~~~~k~~s~~~~~~~~~~~~~l~-~~~~~~~~~~~~i~ 170 (338)
...++..||+.| ++.||+.+ ..+|.|+||||+|++.+.+ +... .+..+..++. ++. ...+|.
T Consensus 472 ~~~TNn~aEl~A----i~~aL~~~----~~~v~I~tDS~~vi~~i~~---~~~~-~~~~l~~~~~~~l~-----~~~~v~ 534 (557)
T 2zd1_A 472 TNTTNQKTELQA----IYLALQDS----GLEVNIVTDSQYALGIIQA---QPDK-SESELVNQIIEQLI-----KKEKVY 534 (557)
T ss_dssp CSCCHHHHHHHH----HHHHHHHS----CSEEEEEECCHHHHHHHTT---CCSE-ESSHHHHHHHHHHH-----HCSEEE
T ss_pred CCCCHHHHHHHH----HHHHHHhC----CCcEEEEeChHHHHHHHhc---CCcc-CCHHHHHHHHHHHh-----cCCCEE
Confidence 468999999999 88888887 6789999999999886533 1100 0222222221 111 235799
Q ss_pred EEEeCCCCCC-CchhHhhhhccc
Q psy529 171 TIHITQNQQI-GNEEVDRGANRD 192 (338)
Q Consensus 171 ~~wip~h~~i-gNe~aD~~a~~a 192 (338)
+.|||||+|+ |||.||++|++|
T Consensus 535 ~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 535 LAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp EEECCSSSCCTTCCGGGGCC---
T ss_pred EEEcCCCCCChhHHHHHHHHhcC
Confidence 9999999999 999999999976
No 11
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.02 E-value=9e-11 Score=120.14 Aligned_cols=86 Identities=12% Similarity=0.126 Sum_probs=61.4
Q ss_pred CCCCccchhhhhHHhchhhhhhHhhhcCCCeEEEEeCCccccccccccCCccccccccCchhhhhccCCCccccccceEE
Q psy529 92 SRPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQFSFKSNSRPSAYKADVLPAELTRLPGKHFLVLHRGTT 171 (338)
Q Consensus 92 ~~~s~~~AE~~A~el~i~~gl~~a~~~~~~~i~I~sDSq~a~~~~~k~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 171 (338)
...++..||+.| ++.||+. ...++.|+||||+|++.+.+ +.+. .+..+..++.+. .....+|.+
T Consensus 469 ~~~TNn~aEl~A----~i~aL~~----~~~~v~I~tDS~~v~~~i~~---~~~~-~~~~l~~~~~~~----~~~~~~v~~ 532 (555)
T 1mu2_A 469 EQTTNQQAELEA----FAMALTD----SGPKVNIIVDSQYVMGIVAS---QPTE-SESKIVNQIIEE----MIKKEAIYV 532 (555)
T ss_dssp SSCCHHHHHHHH----HHHHHHT----SCSEEEEEESCHHHHHHHHT---CCSE-ESCHHHHHHHHH----HHHCSEEEE
T ss_pred CCCCHHHHHHHH----HHHHHHc----CCCeEEEEEehHHHHHHHhc---cccc-ccHHHHHHHHHH----hccCCcEEE
Confidence 467899999999 7777776 56899999999999886532 2211 222222222111 012356899
Q ss_pred EEeCCCCCC-CchhHhhhhcccc
Q psy529 172 IHITQNQQI-GNEEVDRGANRDT 193 (338)
Q Consensus 172 ~wip~h~~i-gNe~aD~~a~~a~ 193 (338)
.|||||+|+ |||.||+||++|+
T Consensus 533 ~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 533 AWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp EECCSSSCCTTHHHHHHHHHTTC
T ss_pred EEEECCCCChhHHHHHHHHHhhC
Confidence 999999999 9999999999874
No 12
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=98.91 E-value=4.7e-10 Score=95.35 Aligned_cols=89 Identities=13% Similarity=-0.022 Sum_probs=62.4
Q ss_pred CCCCccchhhhhHHhchhhhhhHhhhcCCCeEEEEeCCccccccccccCCccc-cccccCchhhhhccCCCccccccceE
Q psy529 92 SRPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQFSFKSNSRPS-AYKADVLPAELTRLPGKHFLVLHRGT 170 (338)
Q Consensus 92 ~~~s~~~AE~~A~el~i~~gl~~a~~~~~~~i~I~sDSq~a~~~~~k~~s~~~-~~~~~~~~~~l~~~~~~~~~~~~~i~ 170 (338)
...++..||+.| ++.||+.+......+|.|+|||+++++.+-+. +.. .-....+..++..+. ...+|.
T Consensus 44 ~~~tnn~aEl~A----~~~aL~~a~~~g~~~v~i~tDS~~vi~~i~~~--w~~~~~~~~~l~~~i~~l~-----~~~~v~ 112 (149)
T 2ehg_A 44 INSTNNVAEYSG----LICLMETMLRLGISSPIIKGDSQLVIKQMNGE--YKVKAKRIIPLYEKAIELK-----KKLNAT 112 (149)
T ss_dssp TTCCHHHHHHHH----HHHHHHHHHHHTCCSCEEEESCHHHHHHHTTS--SCCCCTTHHHHHHHHHHHH-----HHHTCE
T ss_pred CCccHHHHHHHH----HHHHHHHHHHcCCCEEEEEeChHHHHHHHhCc--cccCCHHHHHHHHHHHHHH-----hcCCEE
Confidence 478899999999 88999999888778999999999998764221 110 001111222222221 122589
Q ss_pred EEEeCCCCCCCchhHhhhhccccc
Q psy529 171 TIHITQNQQIGNEEVDRGANRDTH 194 (338)
Q Consensus 171 ~~wip~h~~igNe~aD~~a~~a~~ 194 (338)
|.|||+| |||.||+||+.|..
T Consensus 113 ~~~V~~~---~N~~AD~LA~~a~~ 133 (149)
T 2ehg_A 113 LIWVPRE---ENKEADRLSRVAYE 133 (149)
T ss_dssp EEECCGG---GCHHHHHHHHHHHH
T ss_pred EEEcCCc---ccHHHHHHHHHHHH
Confidence 9999996 89999999999964
No 13
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=98.85 E-value=3.8e-10 Score=93.72 Aligned_cols=91 Identities=11% Similarity=0.096 Sum_probs=61.0
Q ss_pred CCCccchhhhhHHhchhhhhhHhhhcCCC----eEEEEeCCccccccccccCCccccccccCchhhhhccCCCccccccc
Q psy529 93 RPSAYKADVLLAELTRLPGKHFLVLHRDT----TIQITQNQQIAPQFSFKSNSRPSAYKADVLPAELTRLPGKHFLVLHR 168 (338)
Q Consensus 93 ~~s~~~AE~~A~el~i~~gl~~a~~~~~~----~i~I~sDSq~a~~~~~k~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~ 168 (338)
.++++.||+.| ++.||+.+...... +|.|+|||+++++..-+. + ..++..+...+.++..........
T Consensus 42 ~~tn~~aEl~A----~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi~~i~~~--~--~~~~~~l~~~~~~i~~l~~~~~~~ 113 (140)
T 3u3g_D 42 ETTNNVAEYEA----LIRALEDLQMFGDKLVDMEVEVRMDSELIVRQMQGV--Y--KVKEPTLKEKFAKIAHIKMERVPN 113 (140)
T ss_dssp EECHHHHHHHH----HHHHHHHHGGGGGGGTTCEEEEEESCHHHHHHHTTS--S--CCCCGGGHHHHHHHHHHHHHHCTT
T ss_pred CCchHHHHHHH----HHHHHHHHHHcCCCCCCceEEEEeChHHHHHHhCCC--c--ccCCHHHHHHHHHHHHHhhcCCCc
Confidence 47899999999 88899998876656 999999999998864321 1 112322322222211100111147
Q ss_pred eEEEEeCCCCCCCchhHhhhhccccc
Q psy529 169 GTTIHITQNQQIGNEEVDRGANRDTH 194 (338)
Q Consensus 169 i~~~wip~h~~igNe~aD~~a~~a~~ 194 (338)
|+|.|||+ -|||.||+||+.|..
T Consensus 114 v~~~~V~~---~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 114 LVFVHIPR---EKNARADELVNEAID 136 (140)
T ss_dssp CEEEECCG---GGGHHHHHHHHHHHH
T ss_pred EEEEEcCc---hhhHHHHHHHHHHHH
Confidence 89999992 399999999998854
No 14
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=98.70 E-value=2.7e-09 Score=89.00 Aligned_cols=91 Identities=14% Similarity=-0.000 Sum_probs=62.6
Q ss_pred CCCccchhhhhHHhchhhhhhHhhhcCCCeEEEEeCCccccccccccCCccccccccCchhhhhccCCCccccccceEEE
Q psy529 93 RPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQFSFKSNSRPSAYKADVLPAELTRLPGKHFLVLHRGTTI 172 (338)
Q Consensus 93 ~~s~~~AE~~A~el~i~~gl~~a~~~~~~~i~I~sDSq~a~~~~~k~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 172 (338)
.+++..||+.| ++.||+.+......+|.|+|||+++++..-+ .+. .++..+...+.++.. .......|.|.
T Consensus 43 ~~tn~~aEl~A----~~~aL~~a~~~~~~~v~i~tDS~~vv~~i~~--~~~--~~~~~l~~~~~~i~~-l~~~~~~v~~~ 113 (141)
T 3hst_B 43 RATNNVAEYRG----LIAGLDDAVKLGATEAAVLMDSKLVVEQMSG--RWK--VKHPDLLKLYVQAQA-LASQFRRINYE 113 (141)
T ss_dssp EECHHHHHHHH----HHHHHHHHHHHTCSEEEEEESCHHHHHHHTT--SSC--CCSHHHHHHHHHHHH-HHTTSSEEEEE
T ss_pred CCchHHHHHHH----HHHHHHHHHHCCCceEEEEeChHHHHHHHhC--Ccc--cCCHHHHHHHHHHHH-HHhcCCeEEEE
Confidence 67899999999 8899999988878899999999999886432 111 122222221211110 00012568999
Q ss_pred EeCCCCCCCchhHhhhhcccccc
Q psy529 173 HITQNQQIGNEEVDRGANRDTHT 195 (338)
Q Consensus 173 wip~h~~igNe~aD~~a~~a~~~ 195 (338)
|||+ -|||.||+||+.|...
T Consensus 114 ~V~~---~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 114 WVPR---ARNTYADRLANDAMDA 133 (141)
T ss_dssp ECCG---GGCHHHHHHHHHHHHH
T ss_pred EcCC---cccHHHHHHHHHHHHH
Confidence 9993 4999999999998643
No 15
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2
Probab=98.24 E-value=6.3e-08 Score=67.86 Aligned_cols=33 Identities=9% Similarity=0.273 Sum_probs=30.3
Q ss_pred CCCchhhhcccCCCCCCCcccccccccCCCcccchh
Q psy529 13 PYLGWDRIDATPSCLPGERLDLYTTEAGRPDRRRYV 48 (338)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 48 (338)
-|.+|+||.+||++|||++||+|.|+.|| +.|+
T Consensus 14 Iy~sW~ec~~qV~g~~ga~yK~F~t~~eA---~~~l 46 (47)
T 1qhk_A 14 IYNTWNECKNQVDGYGGAIYKKFNSYEQA---KSFL 46 (47)
T ss_dssp EEEEHHHHHHHSSSCSSCCCEEESCHHHH---HHHH
T ss_pred eECCHHHHHHHhcCCCCCccCCCCCHHHH---HHHh
Confidence 48999999999999999999999999998 6664
No 16
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=98.17 E-value=9.3e-08 Score=68.65 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=32.0
Q ss_pred CCCchhhhcccCCCCCCCcccccccccCCCcccchhhh
Q psy529 13 PYLGWDRIDATPSCLPGERLDLYTTEAGRPDRRRYVAL 50 (338)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 50 (338)
-|.+|+||.+||++|||++||+|.|+.|| +.|+..
T Consensus 16 Iy~sW~ec~~qV~g~~ga~yK~F~t~~eA---~~~l~~ 50 (53)
T 3bsu_A 16 VFLTWNECRAQVDRFPAARFKKFATEDEA---WAFVRK 50 (53)
T ss_dssp EESSHHHHHHHHTTCTTCEEEEESSHHHH---HHHHHC
T ss_pred eECCHHHHHHHhcCCCCCccCCCCCHHHH---HHHHHh
Confidence 48999999999999999999999999999 777654
No 17
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=97.43 E-value=9.4e-06 Score=69.28 Aligned_cols=88 Identities=14% Similarity=0.090 Sum_probs=61.5
Q ss_pred CCCccchhhhhHHhchhhhhhHhhhcCCCeEEEEeCCccccccccc---cCCccccccccCchhhhhccCCCccccccce
Q psy529 93 RPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQFSFK---SNSRPSAYKADVLPAELTRLPGKHFLVLHRG 169 (338)
Q Consensus 93 ~~s~~~AE~~A~el~i~~gl~~a~~~~~~~i~I~sDSq~a~~~~~k---~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~i 169 (338)
..++..||..| ++.||+.+..... +|.|+||||+++.-..+ ..+.....++..+...|.+.. .....+.+
T Consensus 48 ~~TNN~aEl~A----~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~--~w~~~~~~ 120 (142)
T 1zbf_A 48 IGTNNMGEFLA----IVHGLRYLKERNS-RKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAE--EWLNTHTY 120 (142)
T ss_dssp EECHHHHHHHH----HHHHHHHHHHTTC-CCCEEESCHHHHHHHHHTCCCCCCCCSTTTHHHHHHHHHHH--HHHHHCCC
T ss_pred CcCcHHHHHHH----HHHHHHHHHhCCC-eEEEEEehHHHHHHHHcCCccCCCCCCcccHHHHHHHHHHH--HHHhhCCC
Confidence 46899999999 8899999987655 89999999999874321 122233445555555544321 12223566
Q ss_pred EEEEeCCCCCC-CchhHhh
Q psy529 170 TTIHITQNQQI-GNEEVDR 187 (338)
Q Consensus 170 ~~~wip~h~~i-gNe~aD~ 187 (338)
+...|.-|++. ||.-||.
T Consensus 121 ~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 121 ETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp CCCEEECCHHHHCSCTTCC
T ss_pred ceeEEEeccCccCcCcccc
Confidence 77888999999 9999995
No 18
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=96.40 E-value=0.00068 Score=57.33 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=42.9
Q ss_pred CCCccchhhhhHHhchhhhhhHhhhcCCCeEEEEeCCccccccccc--c-CCccccccccCchhhhhc
Q psy529 93 RPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQFSFK--S-NSRPSAYKADVLPAELTR 157 (338)
Q Consensus 93 ~~s~~~AE~~A~el~i~~gl~~a~~~~~~~i~I~sDSq~a~~~~~k--~-~s~~~~~~~~~~~~~l~~ 157 (338)
..++..||..| ++.||+.+.... .++.|+||||++++-+.+ . .+...++++..+...|.+
T Consensus 42 ~tTNN~aEl~A----~i~aL~~l~~~~-~~v~i~tDSqyVi~wi~~~~~kt~~~~~vkN~dLw~~ld~ 104 (134)
T 4htu_A 42 IGTNNMGEFLA----IVHGLRYLKERN-SRKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDE 104 (134)
T ss_dssp EECHHHHHHHH----HHHHHHHHHHTT-CCCCEEESCHHHHHHHHHTCCCCCCCCSSTTHHHHHHHHH
T ss_pred CCchHHHHHHH----HHHHHHHHHhCC-CCEEEEcchHHHHHHHHcCCcccCCCCCccCHHHHHHHHH
Confidence 67899999999 889999887753 348999999999874322 1 223345566666666554
No 19
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=41.03 E-value=8 Score=28.84 Aligned_cols=22 Identities=18% Similarity=0.507 Sum_probs=17.9
Q ss_pred CCCCCCCCcc----chhhhhhccCcc
Q psy529 277 PLCSCGENLL----TVKHLLDCVHHA 298 (338)
Q Consensus 277 p~C~~Cg~~e----Tv~HI~~Cp~~~ 298 (338)
..|+.|+.+. -++||-.||+..
T Consensus 31 NiCPYC~nRls~eGl~RHV~~CPKR~ 56 (77)
T 2l7x_A 31 NICPYCASRLTSDGLARHVTQCPKRK 56 (77)
T ss_dssp TCCTTTCCCCCTTTHHHHHTTCSHHH
T ss_pred ccChhhhccCCccchhhhcccCccHH
Confidence 4799898765 588999999965
Done!