RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy529
(338 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 2e-07
Identities = 50/292 (17%), Positives = 78/292 (26%), Gaps = 131/292 (44%)
Query: 17 WDRIDA-TPSCL-----------PGERLDLYTTEAGRPDRRRYVAL--QPYLSGLPDSEW 62
W+R D P + E G+ R Y A+ + + G +E
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE- 1704
Query: 63 LALQWVLLFDDFHL----LPFLHPAPQFSFKSNSRPSAYKADVLLAELTRLPGKHFLVLH 118
+F + + F L+
Sbjct: 1705 ------KIFKEINEHSTSYTFRSEK--------------------GLLSA---------- 1728
Query: 119 RDTTIQITQNQQIA------PQFS-FKSN-SRP-------------SA--YKADVLPAE- 154
TQ Q A F KS P +A ADV+ E
Sbjct: 1729 -------TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES 1781
Query: 155 LTRLPGKHFLVLHRGTTIHITQNQQIGNEEVDRGANRDTHTQ--AIN------ICSPDDL 206
L + V +RG T+ V R ++ AIN S + L
Sbjct: 1782 LVEV------VFYRGMTMQ---------VAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 207 KTMVKKLA-----------YN--NWQV--------LWNQTDPLNKLKQIKPI 237
+ +V+++ YN N Q L T+ LN +K ++ I
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK-LQKI 1877
Score = 39.3 bits (91), Expect = 0.002
Identities = 50/318 (15%), Positives = 95/318 (29%), Gaps = 93/318 (29%)
Query: 30 ERLDLYTTEAGRPDRRRYVA-----LQPYLSGLPDSEWL------ALQWVLLFDDFHLLP 78
E DLY T + L + D+E + L+W+ +
Sbjct: 172 ELRDLYQT--YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 79 FLHPAPQFSFKSNSRPSAYKADVLLAELTRLPGKHFLVL----------HRDTTIQITQN 128
+L P S P L + +L H++V R T +
Sbjct: 230 YLLSIP-ISC-----P--------LIGVIQL--AHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 129 QQ--IAPQFSFKSNSRPSAYKADVLPAELTRLPGKHFLVLHRGTTIHITQNQQIGNEEVD 186
Q + +++S S + + + G + T++ + + + ++
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE----DSLE 329
Query: 187 RGANRDTHTQAINICSPDDLKTMVKKLAYNNWQVLWNQTDPLNKLKQIKPIISTWKTSQQ 246
+ +I+ + + ++ V K N P K Q++ IS ++
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKT---------NSHLPAGK--QVE--ISLVNGAKN 376
Query: 247 SRRYDEVVLSRLRIGHTRVTHSYLFERTTPP--LCSCGENLLTVK--HLLDCVHHAPSNK 302
+V+S G PP L L K LD P ++
Sbjct: 377 ------LVVS----G--------------PPQSLYGLNLTLRKAKAPSGLD-QSRIPFSE 411
Query: 303 RKPV-QVQFYLLR---PY 316
RK +F L P+
Sbjct: 412 RKLKFSNRF--LPVASPF 427
Score = 38.5 bits (89), Expect = 0.003
Identities = 32/174 (18%), Positives = 48/174 (27%), Gaps = 40/174 (22%)
Query: 18 DRIDATPSCLPGER---LDLYTTEAGRPDRRRYVALQPYLSGLPDSEWL-ALQWVLL--- 70
D ++ T S LP + + L + V +SG P S L L L
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNG------AKNLV-----VSGPPQS--LYGLNLTLRKAK 397
Query: 71 ---FDDFHLLPFLHPAPQFS--FKSNSRP--SAYKADVLLAELTRLPGKHFLVLHRDTTI 123
D +PF +FS F + P S L + +D I
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 124 QITQNQQIAPQFSFKSNSRPSAYKADVLPA---ELTRLPGKHFLVLHRGTTIHI 174
P + S + + RLP + + HI
Sbjct: 458 ---------PVYDTFDGSDLRVLSGSISERIVDCIIRLP-VKWETTTQFKATHI 501
Score = 37.7 bits (87), Expect = 0.005
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 26/100 (26%)
Query: 238 ISTWKTSQQSRRYDEVVLSRLRIGHTRVTHSYLFERTTPPLCSCGENLLTVKHLLDCVHH 297
+S+ + ++D+V L + T + YL G ++ H L
Sbjct: 68 VSSLVEPSKVGQFDQV----LNLCLTEFENCYL----------EGNDI----HAL--AAK 107
Query: 298 APSNKRKPVQVQFYLLRPYF------GQKFKTCKKSGLLR 331
+ L++ Y + F S L R
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Score = 33.1 bits (75), Expect = 0.15
Identities = 57/350 (16%), Positives = 94/350 (26%), Gaps = 144/350 (41%)
Query: 32 LDLYTTEAGRPDRRRYVALQPYLSGLPDSEWL-ALQWVLLFDDFHLLPFLHPAPQFSFKS 90
+D Y+T RP + +L+ L +P + + A Q L + F+ + P P F +
Sbjct: 1 MDAYST---RPLTLSHGSLEHVLL-VPTASFFIASQ---LQEQFNKI---LPEPTEGFAA 50
Query: 91 NSRPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQF--SFKSNSRPSAYKA 148
+ P+ AEL FL + S S+ +
Sbjct: 51 DDEPTT------PAELV----GKFL------------------GYVSSLVEPSKVGQFD- 81
Query: 149 DVLPAELTRLPGKHFLVLHRGTTIHITQNQQI--GNEEVDRGANRDTHTQAINICSPDDL 206
VL L F GN D H A + +D
Sbjct: 82 QVLNLCL-----TEF-------------ENCYLEGN---------DIHALAAKLLQEND- 113
Query: 207 KTMVKKLAYNNWQVLWNQTDPLNKLKQIKPIISTWKTSQQ--SRRYDEVVLSRL----RI 260
L + K +I + T++ R +D+ S L
Sbjct: 114 ----------------------TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 261 GHTRV---------THSYLFE-----RTTPPLCSCGENLLTV--KHLLDCVHHAPSNK-- 302
G+ ++ T Y E +T L +L+ + L + + +
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV---GDLIKFSAETLSELIRTTLDAEKV 208
Query: 303 -----------RKPVQV--QFYLLR-PY---------FGQKFKTCKKSGL 329
P + YLL P T K G
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 6e-06
Identities = 43/307 (14%), Positives = 83/307 (27%), Gaps = 95/307 (30%)
Query: 35 YTTEAGRPDRRRYVALQPYLSGLPDSEWLALQWVLLFDDF----HLLPFLHPAPQFSFKS 90
+ + + RR + +PY + L L+ + F+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCL-----------LVLLNVQNAKAWNA-------FNLSC 266
Query: 91 N----SRPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQFSFKSNSRPSAY 146
+R D L A T H + H T+ + + + + RP
Sbjct: 267 KILLTTRFKQV-TDFLSAATT----THISLDHHSMTLTPDEVKSL---LLKYLDCRPQD- 317
Query: 147 KADVLPAE-LTRLPGKHFLVLHRGTTIHITQNQQIGNEEVDRGANR---------DTHTQ 196
LP E LT P L I E + G D T
Sbjct: 318 ----LPREVLTTNP----RRL-----------SIIA-ESIRDGLATWDNWKHVNCDKLTT 357
Query: 197 AINIC----SPDDLKTMVKKLA---YNNW------QVLWNQTDP------LNKLKQIKPI 237
I P + + M +L+ + ++W +NKL + +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSL 416
Query: 238 ISTWKTSQQSRRYDEVVLSRLRIGHTRVTHSYLFERTTPPLCSCGENLLTVK-------H 290
+ + ++++ + H + + P ++L+ H
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 291 LLDCVHH 297
+ HH
Sbjct: 477 I---GHH 480
Score = 27.5 bits (60), Expect = 9.3
Identities = 38/243 (15%), Positives = 74/243 (30%), Gaps = 51/243 (20%)
Query: 18 DRIDATPSCLPGERLDLYTTEAGRPDRRRYVALQPYLSGLPDSEWLALQWVLLFDDFHLL 77
D I + + G L+ T + + ++ L + ++L
Sbjct: 52 DHIIMSKDAVSGTLR-LFWTLLSKQEEMVQKFVEEVLR--INYKFLMSPI---------- 98
Query: 78 PFLHPAPQFSFKSNSRPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQIAPQFSF 137
K+ R + + + + RL + D NQ A
Sbjct: 99 -----------KTEQRQPSMMTRMYIEQRDRL--------YND-------NQVFAKYNV- 131
Query: 138 KSNSRPSAYKADVLPAELTRL-PGKHFLVLH--RGTTIHITQNQQIGNEEVDRGANRDTH 194
SR Y L L L P K +++ G+ + +V +
Sbjct: 132 ---SRLQPYLK--LRQALLELRPAK-NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 195 -TQAINICSPDDLKTMVKKLAYNNWQVLWNQTDPLNKLKQIKPIISTWKTS-QQSRRYDE 252
N SP+ + M++KL Y +++D + +K I +S+ Y+
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 253 VVL 255
+L
Sbjct: 246 CLL 248
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Length = 201
Score = 31.8 bits (72), Expect = 0.19
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 12/72 (16%)
Query: 265 VTHSYLF---------ERTTPPLCSCGENLLTVKHLLDCVHHAPSNKRK---PVQVQFYL 312
VT+ F L G ++ H+L + + S K +
Sbjct: 72 VTYHTGFVREGENTMPPEVEEELRKRGAKIVRQSHILSGLERSISRKLGGVSRTEAIAEA 131
Query: 313 LRPYFGQKFKTC 324
LR FG K C
Sbjct: 132 LRSLFGHGLKVC 143
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 29.4 bits (65), Expect = 2.1
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 113 HFLVL--HRDTTIQITQNQQIAPQFSFKSNSRPSAY 146
HFL L T I I + Q P+F ++ A+
Sbjct: 758 HFLSLSFTPTTVIGIRGSDQAIPKFQMNCYAKEDAF 793
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.5
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 5/27 (18%)
Query: 127 QNQQIAPQFSFKSNSRPSAYKADVLPA 153
+ Q + K + Y D PA
Sbjct: 18 EKQALK-----KLQASLKLYADDSAPA 39
>1ugj_A Riken cDNA 2310057J16 protein; structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.41.1.3
Length = 141
Score = 26.8 bits (59), Expect = 5.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 100 DVLLAELTRLPGKHFLVLHRDTTIQI 125
+ +L E+ + HFL+L RD++ Q
Sbjct: 42 NRILEEIEKSKANHFLILFRDSSCQF 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.426
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,116,563
Number of extensions: 293068
Number of successful extensions: 488
Number of sequences better than 10.0: 1
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 17
Length of query: 338
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 244
Effective length of database: 4,077,219
Effective search space: 994841436
Effective search space used: 994841436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)