RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy529
         (338 letters)



>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 190

 Score = 31.6 bits (72), Expect = 0.083
 Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 12/72 (16%)

Query: 265 VTHSYLF---------ERTTPPLCSCGENLLTVKHLLDCVHHAPSNKRK---PVQVQFYL 312
           VT+   F               L   G  ++   H+L  +  + S K       +     
Sbjct: 61  VTYHTGFVREGENTMPPEVEEELRKRGAKIVRQSHILSGLERSISRKLGGVSRTEAIAEA 120

Query: 313 LRPYFGQKFKTC 324
           LR  FG   K C
Sbjct: 121 LRSLFGHGLKVC 132


>d1ugja_ b.41.1.3 (A:) RIKEN cDNA 2310057j16 protein (KIAA1543)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 141

 Score = 27.8 bits (62), Expect = 1.0
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 14/85 (16%)

Query: 102 LLAELTRLPGKHFLVLHRDTTIQI----TQNQQ---------IAPQFSFKSNSRPSAYKA 148
           +L E+ +    HFL+L RD++ Q     T + +           P+           YK 
Sbjct: 44  ILEEIEKSKANHFLILFRDSSCQFRALYTLSGETEELSRLAGYGPRT-VTPAMVEGIYKY 102

Query: 149 DVLPAELTRLPGKHFLVLHRGTTIH 173
           +      T++P K   +     TI 
Sbjct: 103 NSDRKRFTQIPAKTMSMSVDAFTIQ 127


>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
           {Escherichia coli [TaxId: 562]}
          Length = 433

 Score = 26.4 bits (57), Expect = 5.3
 Identities = 8/50 (16%), Positives = 18/50 (36%)

Query: 120 DTTIQITQNQQIAPQFSFKSNSRPSAYKADVLPAELTRLPGKHFLVLHRG 169
           +  ++  +  +   +      +     +  V+PAE+  LP     V   G
Sbjct: 359 EHEVERDRYSKNTGKHHSTGRALERVRERVVMPAEIANLPDLTAYVGFAG 408


>d1jpdx2 d.54.1.1 (X:-2-113) L-Ala-D/L-Glu epimerase {Escherichia
           coli [TaxId: 562]}
          Length = 116

 Score = 25.4 bits (55), Expect = 5.7
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 230 KLKQIK------PIISTWKTSQQSRRYDEVVLSRLRI-GHTRVTHSYLFERTTPPLCSCG 282
            ++ +K      P+ + +  ++ SR    VV+  L   G         + R      S  
Sbjct: 3   HMRTVKVFEEAWPLHTPFVIARGSRSEARVVVVELEEEGIKGTGECTPYPRYGESDASVM 62

Query: 283 ENLLTVKHLLDCVHH 297
             +++V   L+    
Sbjct: 63  AQIMSVVPQLEKGLT 77


>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase
           LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 170

 Score = 25.4 bits (55), Expect = 7.7
 Identities = 8/62 (12%), Positives = 16/62 (25%), Gaps = 7/62 (11%)

Query: 72  DDFHLLPFLHPAPQFSFKSNSRPSAYKADVLLAELTRLPGKHFLVLHRDTTIQITQNQQI 131
           D   +          +   N+R            +       FL+  R+T   +     +
Sbjct: 113 DVLAIFDVGAYGISMANNYNARGRP-------RMVLTSKKGVFLIRERETYADLIAKDIV 165

Query: 132 AP 133
            P
Sbjct: 166 PP 167


>d1gjia1 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NFKB),
           dimerization domain {Chicken (Gallus gallus), C-rel
           [TaxId: 9031]}
          Length = 100

 Score = 24.7 bits (54), Expect = 7.9
 Identities = 5/13 (38%), Positives = 8/13 (61%)

Query: 303 RKPVQVQFYLLRP 315
            +P+ V+  L RP
Sbjct: 72  TEPITVKMQLRRP 84


>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
           chain {Escherichia coli [TaxId: 562]}
          Length = 1074

 Score = 25.9 bits (56), Expect = 8.8
 Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 10/72 (13%)

Query: 24  PSCLPGERLDLYTTEAGRPDRRRYVALQPYLSGLPDSE----------WLALQWVLLFDD 73
           P+    E+ D+ T++          A+ P      D E           + +  +    D
Sbjct: 787 PTATWYEKDDMNTSDMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEVCVGHLGKETD 846

Query: 74  FHLLPFLHPAPQ 85
              LP  H +  
Sbjct: 847 IVTLPIQHDSAA 858


>d2ixma1 a.268.1.1 (A:23-322) Serine/threonine-protein phosphatase
           2A regulatory subunit B', PTPA {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 300

 Score = 25.5 bits (56), Expect = 9.5
 Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 67  WVLLFDDFHLLPFLHPAPQFSFKSNSRPSA 96
           W L  DDF  LPF+  + Q        P  
Sbjct: 188 WGL--DDFQFLPFIWGSSQLIDHPYLEPRH 215


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0612    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,265,993
Number of extensions: 57598
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 10
Length of query: 338
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,226,816
Effective search space: 309157632
Effective search space used: 309157632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)