BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5290
(536 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|156548548|ref|XP_001604962.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Nasonia vitripennis]
Length = 210
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 138/146 (94%), Positives = 144/146 (98%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL+QFKEQFGDKPSEKRPARS+LIVLVAHNDDPTDQ+FVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQLFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGIKTIKTYCQRMQEE IHRAIIVVQ+GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 DEPKIGIKTIKTYCQRMQEEKIHRAIIVVQSGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIVLTP+EK+ELLTRY
Sbjct: 138 NITEHELVPEHIVLTPDEKEELLTRY 163
>gi|66543279|ref|XP_623541.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis mellifera]
Length = 179
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/146 (94%), Positives = 143/146 (97%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL+QFKEQFGDKPSEKRPARS+LIVLVAHNDDPTDQ+FVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQLFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGIKTIKTYCQRMQEE IHRAIIVVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 DEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIVLTP+EK+ELLTRY
Sbjct: 138 NITEHELVPEHIVLTPDEKEELLTRY 163
>gi|48124579|ref|XP_396561.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis mellifera]
gi|340724888|ref|XP_003400810.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Bombus terrestris]
gi|380012055|ref|XP_003690105.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis florea]
Length = 210
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/146 (94%), Positives = 143/146 (97%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL+QFKEQFGDKPSEKRPARS+LIVLVAHNDDPTDQ+FVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQLFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGIKTIKTYCQRMQEE IHRAIIVVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 DEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIVLTP+EK+ELLTRY
Sbjct: 138 NITEHELVPEHIVLTPDEKEELLTRY 163
>gi|357609342|gb|EHJ66401.1| hypothetical protein KGM_04074 [Danaus plexippus]
Length = 210
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 136/146 (93%), Positives = 141/146 (96%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPS+KRPARS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSDKRPARSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DE KIGIKTIKTYC RMQEE IHRAI+VVQ GMTPSAKQSLVDMAPKYILE+FLESELLI
Sbjct: 78 DEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAPKYILEHFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIVLTP+EKQELL RY
Sbjct: 138 NITEHELVPEHIVLTPDEKQELLARY 163
>gi|350422012|ref|XP_003493028.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Bombus impatiens]
Length = 210
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/146 (94%), Positives = 143/146 (97%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL+QFKEQFGDKPSEKRPARS+LIVLVAHNDDPTDQ+FVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQLFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGIKTIKTYCQRMQEE IHRAIIVVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 DEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIVLTP+EK+ELLTRY
Sbjct: 138 NITEHELVPEHIVLTPDEKEELLTRY 163
>gi|332022832|gb|EGI63105.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Acromyrmex echinatior]
Length = 210
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 137/146 (93%), Positives = 142/146 (97%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL+ FKEQFGDKPSEKRPARS+LIVLVAHNDDPTDQ+FVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLELFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQLFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGIKTIKTYCQRMQEE IHRAIIVVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 DEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIVLTP+EK+ELLTRY
Sbjct: 138 NITEHELVPEHIVLTPDEKEELLTRY 163
>gi|383865249|ref|XP_003708087.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Megachile rotundata]
Length = 210
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 137/146 (93%), Positives = 142/146 (97%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL+QFKEQFGDKPSEKRPARS+LIVLVAHNDDPTDQ+FVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQLFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGIKTIKTYCQRMQEE IHRAIIVVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 DEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIVLTP+EK+ELL RY
Sbjct: 138 NITEHELVPEHIVLTPDEKEELLGRY 163
>gi|322797006|gb|EFZ19320.1| hypothetical protein SINV_02648 [Solenopsis invicta]
Length = 211
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 136/146 (93%), Positives = 142/146 (97%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQ L+QFKEQFGDKPSEK+PARS+LIVLVAHNDDPTDQ+FVFFP
Sbjct: 19 MQLCHDRGYLVTQDELDQDLEQFKEQFGDKPSEKKPARSDLIVLVAHNDDPTDQLFVFFP 78
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGIKTIKTYCQRMQEE IHRAIIVVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 79 DEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLI 138
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIVLTP+EK+ELLTRY
Sbjct: 139 NITEHELVPEHIVLTPDEKEELLTRY 164
>gi|149287100|gb|ABR23449.1| 25-kDa subunit RNA polymerase [Ornithodoros parkeri]
Length = 210
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/146 (92%), Positives = 140/146 (95%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLDQFK+QFGDKPSE+RPARS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDQFKQQFGDKPSERRPARSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGIKTIKTYCQRMQEE I RAIIVVQ GMTPSAKQ+L DMAPKYILEYFLESELLI
Sbjct: 78 DEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALTDMAPKYILEYFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+VLTPEEK ELL RY
Sbjct: 138 NITEHELVPEHVVLTPEEKAELLARY 163
>gi|242247587|ref|NP_001156054.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1-like
[Acyrthosiphon pisum]
gi|239793387|dbj|BAH72818.1| ACYPI000388 [Acyrthosiphon pisum]
Length = 210
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/146 (93%), Positives = 141/146 (96%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL+QFKEQFGDKPSEKRP RS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPGRSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPKIGIKTIKTYCQRMQEETI RAIIVVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 EEPKIGIKTIKTYCQRMQEETITRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIVLTP+EKQELL RY
Sbjct: 138 NITEHELVPEHIVLTPDEKQELLCRY 163
>gi|332373332|gb|AEE61807.1| unknown [Dendroctonus ponderosae]
Length = 210
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 133/146 (91%), Positives = 140/146 (95%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL+QFKE FGDKPSEKRP+RS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEQFKEHFGDKPSEKRPSRSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGI+TIKTYCQRMQ+E IHRAIIVVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 DEPKIGIRTIKTYCQRMQDENIHRAIIVVQAGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+ PEEKQELL RY
Sbjct: 138 NITEHELVPEHVVMNPEEKQELLARY 163
>gi|31235339|ref|XP_319221.1| AGAP010064-PA [Anopheles gambiae str. PEST]
gi|157128329|ref|XP_001661404.1| DNA-directed RNA polymerase II [Aedes aegypti]
gi|170059825|ref|XP_001865530.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Culex
quinquefasciatus]
gi|30174740|gb|EAA43596.1| AGAP010064-PA [Anopheles gambiae str. PEST]
gi|108872649|gb|EAT36874.1| AAEL011087-PA [Aedes aegypti]
gi|167878475|gb|EDS41858.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Culex
quinquefasciatus]
Length = 210
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 135/146 (92%), Positives = 140/146 (95%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQL HDRGYLVTQDELDQTL+QFKEQFGDKPSEKRPARS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGIKTIKTYC RMQEE IHRAI+VVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 DEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+TPEEKQELL RY
Sbjct: 138 NITEHELVPEHVVMTPEEKQELLARY 163
>gi|307214976|gb|EFN89821.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Harpegnathos saltator]
Length = 210
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 135/146 (92%), Positives = 141/146 (96%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQT++QFKE +GDKPSEKRPARSELIVLVAHNDDPTDQ+FVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTIEQFKEHYGDKPSEKRPARSELIVLVAHNDDPTDQLFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGIKTIKTYCQRMQEE IHRAIIVVQ GMTPSAKQSL DMAPKYILE FLESELLI
Sbjct: 78 DEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLTDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIVLTP+EK+ELLTRY
Sbjct: 138 NITEHELVPEHIVLTPDEKEELLTRY 163
>gi|242017042|ref|XP_002429002.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212513848|gb|EEB16264.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 210
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 135/146 (92%), Positives = 140/146 (95%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL+QFKEQFGDKPSEK PARS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKIPARSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
D+PKIGIKTIKTYCQRMQEE IHRAIIVVQ GMTPSAKQSL DMAPKYILE FLESELLI
Sbjct: 78 DDPKIGIKTIKTYCQRMQEENIHRAIIVVQQGMTPSAKQSLSDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+TPEEKQELL RY
Sbjct: 138 NITEHELVPEHVVMTPEEKQELLQRY 163
>gi|346469147|gb|AEO34418.1| hypothetical protein [Amblyomma maculatum]
Length = 210
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/146 (91%), Positives = 141/146 (96%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLDQFK+QFGDKPSE+RPAR++LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDQFKQQFGDKPSERRPARNDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGIKTIKTYCQRMQEE I RAIIVVQTGMTPSAKQ+L DMAPKYILE+FLESELLI
Sbjct: 78 DEPKIGIKTIKTYCQRMQEENITRAIIVVQTGMTPSAKQALGDMAPKYILEHFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+VLTPEEK ELL RY
Sbjct: 138 NITEHELVPEHVVLTPEEKAELLARY 163
>gi|321475403|gb|EFX86366.1| hypothetical protein DAPPUDRAFT_308488 [Daphnia pulex]
Length = 210
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 134/146 (91%), Positives = 140/146 (95%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL+QFK QFGDKPSE++PARS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEQFKIQFGDKPSERKPARSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGIKTIKTYCQRMQEE I RAIIVVQ+GMTPSAKQSL DMAPKYILEYF ESELLI
Sbjct: 78 DEPKIGIKTIKTYCQRMQEENITRAIIVVQSGMTPSAKQSLTDMAPKYILEYFTESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+VLTPEEKQELL RY
Sbjct: 138 NITEHELVPEHVVLTPEEKQELLCRY 163
>gi|312383157|gb|EFR28348.1| hypothetical protein AND_03878 [Anopheles darlingi]
Length = 210
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 134/146 (91%), Positives = 140/146 (95%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQL HDRGYLVTQDELDQTL+QFKEQFGDKPSEKRPARS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPKIGIKTIKTYC RMQEE IHRAI+VVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 EEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+TPEEKQELL RY
Sbjct: 138 NITEHELVPEHVVMTPEEKQELLARY 163
>gi|289740815|gb|ADD19155.1| RNA polymerase 25-kDa subunit [Glossina morsitans morsitans]
Length = 210
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 134/146 (91%), Positives = 139/146 (95%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQL HDRGYLVTQDELDQTL+QFKE FGDKPSEKRPARS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGIKTIKTYC RMQEE IHRAI+VVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 DEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+TPEEKQELL RY
Sbjct: 138 NITEHELVPEHVVMTPEEKQELLARY 163
>gi|91087261|ref|XP_975533.1| PREDICTED: similar to AGAP010064-PA [Tribolium castaneum]
gi|270010583|gb|EFA07031.1| hypothetical protein TcasGA2_TC010003 [Tribolium castaneum]
Length = 210
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 132/146 (90%), Positives = 140/146 (95%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL+QFKEQ GDKPSEKRP+R++L +LVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEQFKEQCGDKPSEKRPSRNDLTILVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGIK IKTYCQRMQ+E IHRAIIVVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 DEPKIGIKAIKTYCQRMQDENIHRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+TPEEKQELLTRY
Sbjct: 138 NITEHELVPEHVVMTPEEKQELLTRY 163
>gi|289740817|gb|ADD19156.1| RNA polymerase 25-kDa subunit [Glossina morsitans morsitans]
Length = 210
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 133/146 (91%), Positives = 138/146 (94%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQL HDRGYLVTQDELDQTL+QFKE FGDKPSEKRPARS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGIKTIKTYC RMQEE IHRAI+VVQ GMTPSAKQSLVDMAPKYILE FLESELL
Sbjct: 78 DEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAPKYILEQFLESELLT 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+TPEEKQELL RY
Sbjct: 138 NITEHELVPEHVVMTPEEKQELLARY 163
>gi|443703356|gb|ELU00950.1| hypothetical protein CAPTEDRAFT_226435 [Capitella teleta]
Length = 210
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 131/146 (89%), Positives = 139/146 (95%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQT+DQFK+QFGDKPSE+RPARS+LIVLVAHNDDP DQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTIDQFKDQFGDKPSERRPARSDLIVLVAHNDDPIDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPK+GIKTIKTYCQRMQEE I RAIIVVQ GMTPSAKQSLVDMAPKYILE FLE+ELLI
Sbjct: 78 DEPKVGIKTIKTYCQRMQEENISRAIIVVQAGMTPSAKQSLVDMAPKYILEQFLEAELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEH LVPEH++LTPEEK ELLTRY
Sbjct: 138 NITEHTLVPEHVLLTPEEKAELLTRY 163
>gi|442755873|gb|JAA70096.1| Putative rna polymerase 25-kda subunit common to polymerases i ii
and iii [Ixodes ricinus]
Length = 210
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 133/146 (91%), Positives = 139/146 (95%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQT DQFK+QFGDKPSE+RPARS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTQDQFKQQFGDKPSERRPARSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGIKTIKTYCQRMQEE I RAIIVVQ GMTPSAKQ+L DMAPKYILE+FLESELLI
Sbjct: 78 DEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALGDMAPKYILEHFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+VLTPEEK ELL RY
Sbjct: 138 NITEHELVPEHVVLTPEEKAELLARY 163
>gi|19922004|ref|NP_610630.1| Rpb5, isoform A [Drosophila melanogaster]
gi|442623281|ref|NP_001260878.1| Rpb5, isoform B [Drosophila melanogaster]
gi|194884129|ref|XP_001976148.1| GG22706 [Drosophila erecta]
gi|195333273|ref|XP_002033316.1| GM20482 [Drosophila sechellia]
gi|195483584|ref|XP_002090346.1| GE13062 [Drosophila yakuba]
gi|195551744|ref|XP_002076283.1| GD15257 [Drosophila simulans]
gi|7303678|gb|AAF58728.1| Rpb5, isoform A [Drosophila melanogaster]
gi|17945808|gb|AAL48951.1| RE34924p [Drosophila melanogaster]
gi|190659335|gb|EDV56548.1| GG22706 [Drosophila erecta]
gi|194125286|gb|EDW47329.1| GM20482 [Drosophila sechellia]
gi|194176447|gb|EDW90058.1| GE13062 [Drosophila yakuba]
gi|194201932|gb|EDX15508.1| GD15257 [Drosophila simulans]
gi|220948406|gb|ACL86746.1| Rpb5-PA [synthetic construct]
gi|220957602|gb|ACL91344.1| Rpb5-PA [synthetic construct]
gi|440214282|gb|AGB93411.1| Rpb5, isoform B [Drosophila melanogaster]
Length = 210
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 132/146 (90%), Positives = 139/146 (95%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQL HDRGYLVTQDELDQTL+QFKE FGDKPSEKRPARS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPKIGIKTIKTYC RMQEE IHRAI+VVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 EEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EEKQELL+RY
Sbjct: 138 NITEHELVPEHVVMTVEEKQELLSRY 163
>gi|195426896|ref|XP_002061524.1| GK20665 [Drosophila willistoni]
gi|194157609|gb|EDW72510.1| GK20665 [Drosophila willistoni]
Length = 210
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 131/146 (89%), Positives = 139/146 (95%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQL HDRGYLVTQDELDQTL+QFKE FGDKPSEKRPARS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPKIGIKTIKTYC RMQEE IHRAI+VVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 EEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEH+LVPEH+V+T EEKQELL+RY
Sbjct: 138 NITEHDLVPEHVVMTAEEKQELLSRY 163
>gi|194752750|ref|XP_001958682.1| GF12445 [Drosophila ananassae]
gi|190619980|gb|EDV35504.1| GF12445 [Drosophila ananassae]
Length = 210
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 131/146 (89%), Positives = 139/146 (95%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQL HDRGYLVTQDELDQTL+QFKE FGDKPSEKRP+RS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPSRSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPKIGIKTIKTYC RMQEE IHRAI+VVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 EEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EEKQELL+RY
Sbjct: 138 NITEHELVPEHVVMTAEEKQELLSRY 163
>gi|195164101|ref|XP_002022887.1| GL16482 [Drosophila persimilis]
gi|198471627|ref|XP_002133786.1| GA22602 [Drosophila pseudoobscura pseudoobscura]
gi|194104949|gb|EDW26992.1| GL16482 [Drosophila persimilis]
gi|198146002|gb|EDY72413.1| GA22602 [Drosophila pseudoobscura pseudoobscura]
Length = 210
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/146 (89%), Positives = 139/146 (95%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQL HDRGYLVTQDELDQTL+QFK+ FGDKPSEKRPARS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLSHDRGYLVTQDELDQTLEQFKDMFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPKIGIKTIKTYC RMQEE IHRAI+VVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 EEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EEKQELL+RY
Sbjct: 138 NITEHELVPEHVVMTVEEKQELLSRY 163
>gi|195026900|ref|XP_001986362.1| GH20567 [Drosophila grimshawi]
gi|193902362|gb|EDW01229.1| GH20567 [Drosophila grimshawi]
Length = 210
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/146 (89%), Positives = 139/146 (95%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQL HDRGYLVTQDELDQTL+QFKE FGDKPS+KRPARS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPARSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPKIGIKTIKTYC RMQEE IHRAI+VVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 EEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T E+KQELL+RY
Sbjct: 138 NITEHELVPEHVVMTAEDKQELLSRY 163
>gi|195119282|ref|XP_002004160.1| GI19761 [Drosophila mojavensis]
gi|195401380|ref|XP_002059291.1| GJ18195 [Drosophila virilis]
gi|193909228|gb|EDW08095.1| GI19761 [Drosophila mojavensis]
gi|194142297|gb|EDW58703.1| GJ18195 [Drosophila virilis]
Length = 210
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 129/146 (88%), Positives = 139/146 (95%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQL HDRGYLVTQDELDQTL+QFKE FGDKPS+KRP+RS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPSRSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPKIGIKTIKTYC RMQEE IHRAI+VVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 EEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T E+KQELL+RY
Sbjct: 138 NITEHELVPEHVVMTAEDKQELLSRY 163
>gi|260788314|ref|XP_002589195.1| hypothetical protein BRAFLDRAFT_278645 [Branchiostoma floridae]
gi|229274370|gb|EEN45206.1| hypothetical protein BRAFLDRAFT_278645 [Branchiostoma floridae]
Length = 210
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 127/146 (86%), Positives = 135/146 (92%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQ LDQFK+QFGDKPSE +PAR +L+VLVAHNDDPTDQMFVFF
Sbjct: 18 MQLCHDRGYLVTQDELDQRLDQFKDQFGDKPSEGKPARKDLVVLVAHNDDPTDQMFVFFA 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPKIGIKTIK YCQRMQEE I RAIIVVQ GMTPSAKQ+LVDMAPKYILE FLESELLI
Sbjct: 78 DEPKIGIKTIKMYCQRMQEENISRAIIVVQMGMTPSAKQALVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEH+LVPEH+V+TPEEK ELL RY
Sbjct: 138 NITEHQLVPEHVVMTPEEKAELLARY 163
>gi|291240531|ref|XP_002740164.1| PREDICTED: DNA directed RNA polymerase II polypeptide E-like
[Saccoglossus kowalevskii]
Length = 210
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 125/146 (85%), Positives = 135/146 (92%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQ+ELDQTLDQFK QFGDKPSE RP R++L VLVAHNDDPTDQMF+FFP
Sbjct: 18 MQLCHDRGYLVTQEELDQTLDQFKSQFGDKPSEGRPRRNDLTVLVAHNDDPTDQMFIFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPKIGIKTIKTYCQ+MQEE I RA IVVQ GMTPSAKQSLVDMAPKYILE FLE+ELLI
Sbjct: 78 EEPKIGIKTIKTYCQKMQEENITRATIVVQAGMTPSAKQSLVDMAPKYILEQFLEAELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
N+TEHELVPEH+V+TPEEK ELL RY
Sbjct: 138 NLTEHELVPEHVVMTPEEKAELLARY 163
>gi|405965226|gb|EKC30623.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Crassostrea gigas]
Length = 210
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 124/146 (84%), Positives = 136/146 (93%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE++P+RS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSERKPSRSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EP +GIKTIKTYCQRMQEE I RAIIVVQ MTPSAKQSL DMAPKYILE FLE+ELLI
Sbjct: 78 EEPNVGIKTIKTYCQRMQEENITRAIIVVQNRMTPSAKQSLTDMAPKYILEQFLEAELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEH LVPEH+V+TPEEK ELL+RY
Sbjct: 138 NITEHMLVPEHVVMTPEEKTELLSRY 163
>gi|225706160|gb|ACO08926.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Osmerus mordax]
Length = 210
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 126/146 (86%), Positives = 133/146 (91%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLD+FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RAIIVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIV+T EE ELLTRY
Sbjct: 138 NITEHELVPEHIVMTKEELSELLTRY 163
>gi|391342990|ref|XP_003745798.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Metaseiulus occidentalis]
Length = 210
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 124/146 (84%), Positives = 135/146 (92%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQ+ELDQ L+ FKEQFGDKPS+K PAR +L+VLV+HNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQEELDQDLEGFKEQFGDKPSDKHPARGDLVVLVSHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DE KIGIKTIKTYCQRMQEE I RAIIVVQ GMTPSA+Q+L DMAPKYILE+FLESELLI
Sbjct: 78 DEAKIGIKTIKTYCQRMQEENISRAIIVVQAGMTPSARQALGDMAPKYILEHFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EHELVPEH+VLTPEEK ELL+RY
Sbjct: 138 NIIEHELVPEHVVLTPEEKTELLSRY 163
>gi|198427419|ref|XP_002130595.1| PREDICTED: similar to 25-kDa subunit RNA polymerase [Ciona
intestinalis]
Length = 210
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 123/146 (84%), Positives = 134/146 (91%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQ ELDQ+L++FKE+FGDKPSE+RP R +L +LVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQHELDQSLEEFKEEFGDKPSERRPGRQDLTILVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+G+KTIKTYCQRMQEE I RAIIVVQ MTPSAKQSL DMAPKYILE FLE ELLI
Sbjct: 78 EEPKVGVKTIKTYCQRMQEENIQRAIIVVQQSMTPSAKQSLFDMAPKYILEQFLEQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+VLTPEEK ELLTRY
Sbjct: 138 NITEHELVPEHVVLTPEEKSELLTRY 163
>gi|317574789|ref|NP_001187413.1| DNA-directed RNA polymerases i II and III subunit rpabc1 [Ictalurus
punctatus]
gi|308322947|gb|ADO28611.1| DNA-directed RNA polymerases i II and III subunit rpabc1 [Ictalurus
punctatus]
Length = 210
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 125/146 (85%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLD+FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RAIIVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIV+T EE ELL RY
Sbjct: 138 NITEHELVPEHIVMTKEEVTELLARY 163
>gi|410921186|ref|XP_003974064.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Takifugu rubripes]
gi|47216655|emb|CAG04853.1| unnamed protein product [Tetraodon nigroviridis]
Length = 210
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 125/146 (85%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLD+FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RAIIVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIV+T EE ELL RY
Sbjct: 138 NITEHELVPEHIVMTKEEVTELLARY 163
>gi|57525846|ref|NP_001003564.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Danio
rerio]
gi|50417194|gb|AAH77151.1| Polymerase (RNA) II (DNA directed) polypeptide E [Danio rerio]
Length = 210
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 124/146 (84%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLD+F+ QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RAIIVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIV+T EE ELL RY
Sbjct: 138 NITEHELVPEHIVMTKEEVTELLARY 163
>gi|114674426|ref|XP_512960.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Pan troglodytes]
Length = 230
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 122/146 (83%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 38 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 97
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 98 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 157
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 158 NITEHELVPEHVVMTKEEVTELLARY 183
>gi|229366774|gb|ACQ58367.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Anoplopoma fimbria]
Length = 210
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 124/146 (84%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLD+FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RAIIVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIV++ EE ELL RY
Sbjct: 138 NITEHELVPEHIVMSKEEVVELLARY 163
>gi|432855568|ref|XP_004068251.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Oryzias latipes]
Length = 210
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 124/146 (84%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RAIIVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIV+T EE ELL RY
Sbjct: 138 NITEHELVPEHIVMTKEEVTELLARY 163
>gi|348504738|ref|XP_003439918.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Oreochromis niloticus]
Length = 210
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 124/146 (84%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RAIIVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIV+T EE ELL RY
Sbjct: 138 NITEHELVPEHIVMTKEEVTELLARY 163
>gi|226371984|gb|ACO51617.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Rana
catesbeiana]
Length = 210
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 123/146 (84%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLD+FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RAIIVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T +E ELL RY
Sbjct: 138 NITEHELVPEHVVMTKDEVTELLARY 163
>gi|1060912|dbj|BAA07406.1| RPB5 [Homo sapiens]
Length = 210
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 123/146 (84%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FLE ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLEQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVSELLARY 163
>gi|209732756|gb|ACI67247.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
gi|303659190|gb|ADM15954.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
Length = 210
Score = 261 bits (666), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 124/146 (84%), Positives = 131/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLD+FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIV+T EE ELL RY
Sbjct: 138 NITEHELVPEHIVMTKEELSELLLRY 163
>gi|209733016|gb|ACI67377.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
gi|225715082|gb|ACO13387.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Esox
lucius]
Length = 210
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/146 (84%), Positives = 131/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLD+FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIV+T EE ELL RY
Sbjct: 138 NITEHELVPEHIVMTKEELSELLLRY 163
>gi|441656609|ref|XP_004093285.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II,
and III subunit RPABC1 [Nomascus leucogenys]
Length = 210
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/146 (83%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQXGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEMTELLARY 163
>gi|62858213|ref|NP_001016473.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Xenopus
(Silurana) tropicalis]
gi|148225220|ref|NP_001083516.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Xenopus
laevis]
gi|38051843|gb|AAH60467.1| MGC68604 protein [Xenopus laevis]
gi|89272916|emb|CAJ82278.1| polymerase (RNA) II (DNA directed) polypeptide E [Xenopus
(Silurana) tropicalis]
gi|163916440|gb|AAI57232.1| polymerase (RNA) II (DNA directed) polypeptide E [Xenopus
(Silurana) tropicalis]
Length = 210
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/146 (83%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLD+FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T +E ELL RY
Sbjct: 138 NITEHELVPEHVVMTKDEVTELLARY 163
>gi|292611220|ref|XP_002661023.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Danio rerio]
Length = 210
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 123/146 (84%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLD+FK QFGD+PSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDEFKIQFGDRPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+E K+GIKTIK YCQRMQEE I RA+IVVQTGMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EELKVGIKTIKMYCQRMQEENITRAVIVVQTGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIV+T EE ELL RY
Sbjct: 138 NITEHELVPEHIVMTKEEVTELLARY 163
>gi|297275632|ref|XP_001117242.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Macaca mulatta]
Length = 203
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/146 (83%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>gi|355702921|gb|EHH29412.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
mulatta]
Length = 210
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/146 (83%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVSELLARY 163
>gi|119589953|gb|EAW69547.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_a [Homo sapiens]
Length = 211
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/146 (83%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>gi|417408698|gb|JAA50889.1| Putative dna-directed rna polymerases i ii and iii subunit
rpabc1-like isoform 2, partial [Desmodus rotundus]
Length = 212
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/146 (83%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 20 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 79
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 80 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 139
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 140 NITEHELVPEHVVMTKEEVTELLARY 165
>gi|46255774|gb|AAH34144.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Homo
sapiens]
Length = 210
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/146 (83%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>gi|14589951|ref|NP_002686.2| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Homo
sapiens]
gi|149761124|ref|XP_001496313.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Equus caballus]
gi|301776310|ref|XP_002923555.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Ailuropoda melanoleuca]
gi|301776312|ref|XP_002923556.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Ailuropoda melanoleuca]
gi|335282254|ref|XP_003354010.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Sus scrofa]
gi|335282256|ref|XP_003354011.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Sus scrofa]
gi|348550374|ref|XP_003461007.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cavia porcellus]
gi|395831291|ref|XP_003788737.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Otolemur garnettii]
gi|402903526|ref|XP_003914616.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Papio anubis]
gi|403308121|ref|XP_003944520.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Saimiri boliviensis boliviensis]
gi|403308123|ref|XP_003944521.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Saimiri boliviensis boliviensis]
gi|403308125|ref|XP_003944522.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 3 [Saimiri boliviensis boliviensis]
gi|403308127|ref|XP_003944523.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 4 [Saimiri boliviensis boliviensis]
gi|426229485|ref|XP_004008821.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Ovis aries]
gi|426229487|ref|XP_004008822.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Ovis aries]
gi|426386425|ref|XP_004059685.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Gorilla gorilla gorilla]
gi|426386427|ref|XP_004059686.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Gorilla gorilla gorilla]
gi|426386429|ref|XP_004059687.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 3 [Gorilla gorilla gorilla]
gi|426386431|ref|XP_004059688.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 4 [Gorilla gorilla gorilla]
gi|678549|gb|AAA62401.1| RNA polymerase II 23kD subunit [Homo sapiens]
gi|13325244|gb|AAH04441.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Homo
sapiens]
gi|119589954|gb|EAW69548.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_b [Homo sapiens]
gi|119589955|gb|EAW69549.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_b [Homo sapiens]
gi|189069173|dbj|BAG35511.1| unnamed protein product [Homo sapiens]
gi|208967082|dbj|BAG73555.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [synthetic
construct]
gi|296485369|tpg|DAA27484.1| TPA: DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Bos taurus]
gi|312152670|gb|ADQ32847.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [synthetic
construct]
gi|355755269|gb|EHH59016.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
fascicularis]
gi|387542622|gb|AFJ71938.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
mulatta]
gi|410264992|gb|JAA20462.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410264994|gb|JAA20463.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410299730|gb|JAA28465.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410299732|gb|JAA28466.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|440910422|gb|ELR60220.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Bos
grunniens mutus]
Length = 210
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/146 (83%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>gi|397485347|ref|XP_003813812.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Pan paniscus]
Length = 256
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 121/146 (82%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+QLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 64 LQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 123
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 124 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 183
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 184 NITEHELVPEHVVMTKEEVTELLARY 209
>gi|345786834|ref|XP_854641.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Canis lupus familiaris]
Length = 210
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/146 (83%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>gi|350537103|ref|NP_001232745.1| putative DNA directed RNA polymerase II polypeptide E [Taeniopygia
guttata]
gi|118103219|ref|XP_418224.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Gallus gallus]
gi|126323555|ref|XP_001365263.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Monodelphis domestica]
gi|395513329|ref|XP_003760879.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Sarcophilus harrisii]
gi|197127122|gb|ACH43620.1| putative DNA directed RNA polymerase II polypeptide E [Taeniopygia
guttata]
gi|387018228|gb|AFJ51232.1| putative DNA directed RNA polymerase II polypeptide E [Crotalus
adamanteus]
Length = 210
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/146 (83%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>gi|225717382|gb|ACO14537.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Esox
lucius]
Length = 210
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 123/146 (84%), Positives = 130/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLD+FK QFGDKPSE RP R++L VL AHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLAAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIV+T EE ELL RY
Sbjct: 138 NITEHELVPEHIVMTKEELSELLLRY 163
>gi|355712729|gb|AES04446.1| polymerase II polypeptide E, 25kDa [Mustela putorius furo]
Length = 209
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 121/146 (82%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKY+LE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>gi|124249077|ref|NP_079830.2| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Mus
musculus]
gi|157819761|ref|NP_001103084.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Rattus
norvegicus]
gi|54036414|sp|Q80UW8.1|RPAB1_MOUSE RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|182676546|sp|B0BNE2.1|RPAB1_RAT RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|28374319|gb|AAH45521.1| Polymerase (RNA) II (DNA directed) polypeptide E [Mus musculus]
gi|74194812|dbj|BAE25998.1| unnamed protein product [Mus musculus]
gi|74198334|dbj|BAE43245.1| unnamed protein product [Mus musculus]
gi|74205025|dbj|BAE20985.1| unnamed protein product [Mus musculus]
gi|74208142|dbj|BAE26292.1| unnamed protein product [Mus musculus]
gi|148699661|gb|EDL31608.1| mCG13422, isoform CRA_a [Mus musculus]
gi|149034612|gb|EDL89349.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|149034613|gb|EDL89350.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|149034614|gb|EDL89351.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|165971683|gb|AAI58788.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Rattus
norvegicus]
Length = 210
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 121/146 (82%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKY+LE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>gi|197098756|ref|NP_001126823.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Pongo
abelii]
gi|75054736|sp|Q5R587.1|RPAB1_PONAB RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|55732763|emb|CAH93079.1| hypothetical protein [Pongo abelii]
Length = 210
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 121/146 (82%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++F+ QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>gi|410342181|gb|JAA40037.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410342183|gb|JAA40038.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410342185|gb|JAA40039.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
Length = 217
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 122/146 (83%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>gi|344243380|gb|EGV99483.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Cricetulus griseus]
Length = 218
Score = 258 bits (660), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/146 (82%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+QLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 26 LQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 85
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKY+LE FL+ ELLI
Sbjct: 86 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLI 145
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 146 NITEHELVPEHVVMTKEEVTELLARY 171
>gi|387915534|gb|AFK11376.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Callorhinchus milii]
Length = 210
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 123/146 (84%), Positives = 131/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++F+ QFGDKPSE P RS+L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFRNQFGDKPSEGHPRRSDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RAIIVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIV+T EE ELL RY
Sbjct: 138 NITEHELVPEHIVMTKEEVTELLARY 163
>gi|410949981|ref|XP_003981695.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Felis catus]
Length = 212
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 121/146 (82%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKY+LE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>gi|149034611|gb|EDL89348.1| rCG29511, isoform CRA_d [Rattus norvegicus]
Length = 242
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 121/146 (82%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKY+LE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>gi|281341350|gb|EFB16934.1| hypothetical protein PANDA_012732 [Ailuropoda melanoleuca]
Length = 193
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 121/146 (82%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+QLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 1 LQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 60
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 61 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 120
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 121 NITEHELVPEHVVMTKEEVTELLARY 146
>gi|149034606|gb|EDL89343.1| rCG29511, isoform CRA_a [Rattus norvegicus]
gi|149034607|gb|EDL89344.1| rCG29511, isoform CRA_a [Rattus norvegicus]
gi|149034608|gb|EDL89345.1| rCG29511, isoform CRA_a [Rattus norvegicus]
Length = 202
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 120/145 (82%), Positives = 131/145 (90%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
QLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP+
Sbjct: 11 QLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPE 70
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKY+LE FL+ ELLIN
Sbjct: 71 EPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLIN 130
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
ITEHELVPEH+V+T EE ELL RY
Sbjct: 131 ITEHELVPEHVVMTKEEVTELLARY 155
>gi|308321620|gb|ADO27961.1| DNA-directed RNA polymerases I, II and III subunit rpabc1
[Ictalurus furcatus]
Length = 210
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 123/146 (84%), Positives = 131/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLD+FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQR+QEE I RAIIVVQ GMTPSAKQS VDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKMYCQRIQEENITRAIIVVQMGMTPSAKQSPVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIV+T EE ELL RY
Sbjct: 138 NITEHELVPEHIVMTKEEVTELLARY 163
>gi|354480932|ref|XP_003502657.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cricetulus griseus]
Length = 235
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/146 (82%), Positives = 131/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M LCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 43 MGLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 102
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKY+LE FL+ ELLI
Sbjct: 103 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLI 162
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 163 NITEHELVPEHVVMTKEEVTELLARY 188
>gi|148699662|gb|EDL31609.1| mCG13422, isoform CRA_b [Mus musculus]
Length = 165
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/145 (82%), Positives = 131/145 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 21 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 80
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKY+LE FL+ ELLI
Sbjct: 81 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLI 140
Query: 121 NITEHELVPEHIVLTPEEKQELLTR 145
NITEHELVPEH+V+T EE ELL R
Sbjct: 141 NITEHELVPEHVVMTKEEVTELLAR 165
>gi|116242767|sp|P19388.4|RPAB1_HUMAN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II 23
kDa polypeptide; AltName: Full=DNA-directed RNA
polymerase II subunit E; AltName: Full=RPB5 homolog;
AltName: Full=XAP4
gi|2896797|gb|AAC03238.1| RPB5_Human [Homo sapiens]
gi|311349818|gb|ADP92094.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349820|gb|ADP92095.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349822|gb|ADP92096.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349824|gb|ADP92097.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349826|gb|ADP92098.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349828|gb|ADP92099.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349830|gb|ADP92100.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349832|gb|ADP92101.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349834|gb|ADP92102.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349836|gb|ADP92103.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349838|gb|ADP92104.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349840|gb|ADP92105.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349842|gb|ADP92106.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349844|gb|ADP92107.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349846|gb|ADP92108.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349848|gb|ADP92109.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349850|gb|ADP92110.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349852|gb|ADP92111.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349854|gb|ADP92112.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349856|gb|ADP92113.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349858|gb|ADP92114.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349860|gb|ADP92115.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349862|gb|ADP92116.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349864|gb|ADP92117.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349866|gb|ADP92118.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349868|gb|ADP92119.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349870|gb|ADP92120.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349872|gb|ADP92121.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349874|gb|ADP92122.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349876|gb|ADP92123.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349878|gb|ADP92124.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349880|gb|ADP92125.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349882|gb|ADP92126.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349884|gb|ADP92127.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349886|gb|ADP92128.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349888|gb|ADP92129.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349890|gb|ADP92130.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349892|gb|ADP92131.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349894|gb|ADP92132.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349896|gb|ADP92133.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
Length = 210
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 121/146 (82%), Positives = 131/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK Q GDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>gi|20071300|gb|AAH26842.1| Polr2e protein [Mus musculus]
Length = 162
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/145 (82%), Positives = 131/145 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKY+LE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTR 145
NITEHELVPEH+V+T EE ELL R
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLAR 162
>gi|90083116|dbj|BAE90640.1| unnamed protein product [Macaca fascicularis]
Length = 210
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 121/146 (82%), Positives = 131/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE E L RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTEPLARY 163
>gi|84000159|ref|NP_001033182.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Bos
taurus]
gi|109893821|sp|Q2T9T3.1|RPAB1_BOVIN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|83405854|gb|AAI11281.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Bos
taurus]
Length = 210
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 120/146 (82%), Positives = 130/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQD LDQTL++FK QFG KPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>gi|340377807|ref|XP_003387420.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Amphimedon queenslandica]
Length = 210
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 116/146 (79%), Positives = 134/146 (91%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+CHDR YLVTQDELDQTLDQFKEQFG++P++ P+R++L +LVAHNDDPTDQMFVFFP
Sbjct: 18 MQMCHDRRYLVTQDELDQTLDQFKEQFGERPNDGHPSRNDLSILVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++PK+GIKTIK YC RMQEE I RAIIVVQ GMTPSAKQ+LVDMAPKYILE F+E+EL+I
Sbjct: 78 EDPKVGIKTIKQYCGRMQEENISRAIIVVQQGMTPSAKQALVDMAPKYILEQFMEAELMI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIV+T EEK+ELL RY
Sbjct: 138 NITEHELVPEHIVMTTEEKRELLARY 163
>gi|449681257|ref|XP_002162780.2| PREDICTED: uncharacterized protein LOC100208454, partial [Hydra
magnipapillata]
Length = 383
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 117/144 (81%), Positives = 131/144 (90%)
Query: 3 LCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDE 62
+CHDR YLVTQDELDQTL+QF EQFGD+PSE P+R ++ VLVAHNDDPTDQMFVFFP+E
Sbjct: 1 MCHDRRYLVTQDELDQTLEQFIEQFGDRPSEGHPSRGDISVLVAHNDDPTDQMFVFFPEE 60
Query: 63 PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINI 122
K+GIKTIK YC RMQEE I+RAIIVVQTGMTPSAKQ+LVDMAPKYILE FLE+ELLIN+
Sbjct: 61 EKVGIKTIKQYCTRMQEEGINRAIIVVQTGMTPSAKQALVDMAPKYILEQFLEAELLINV 120
Query: 123 TEHELVPEHIVLTPEEKQELLTRY 146
TEH LVPEH+VL+PEEK ELLTRY
Sbjct: 121 TEHNLVPEHVVLSPEEKAELLTRY 144
>gi|72109111|ref|XP_783584.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Strongylocentrotus purpuratus]
gi|390354452|ref|XP_003728337.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Strongylocentrotus purpuratus]
Length = 210
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 118/146 (80%), Positives = 129/146 (88%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQ+ELDQTL+QFKEQFGDKPSE RP+R +L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQEELDQTLEQFKEQFGDKPSENRPSRKDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+E K+G+KTIK YCQRMQEE I RAII VQ MTPSAK SL DMAPKYILE FLE+ELLI
Sbjct: 78 EEKKVGMKTIKAYCQRMQEENITRAIITVQEKMTPSAKTSLGDMAPKYILEQFLEAELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEH+ VPEH+V+T EEK ELL RY
Sbjct: 138 NITEHDFVPEHVVMTGEEKAELLARY 163
>gi|326934422|ref|XP_003213289.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Meleagris gallopavo]
Length = 209
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/146 (82%), Positives = 130/146 (89%), Gaps = 1/146 (0%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFV FP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVSFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 -EPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 136
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 137 NITEHELVPEHVVMTKEEVTELLARY 162
>gi|225711614|gb|ACO11653.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Caligus
rogercresseyi]
Length = 210
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 114/136 (83%), Positives = 129/136 (94%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M LCHDRGYLVTQDELDQTLDQFK QFGDKPSEK+P+R++L +LVAHNDDPTDQMFVFFP
Sbjct: 18 MSLCHDRGYLVTQDELDQTLDQFKVQFGDKPSEKQPSRNDLTILVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
D+PKIGIK I+TYC+RMQEE I RAII+VQ+GMTPSAKQSL+DMAPKYILE FLESELLI
Sbjct: 78 DDPKIGIKHIRTYCKRMQEENITRAIILVQSGMTPSAKQSLMDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTP 136
N+TEH+LVPEH+V+TP
Sbjct: 138 NLTEHDLVPEHVVMTP 153
>gi|312095335|ref|XP_003148322.1| RPB-5 protein [Loa loa]
gi|307756513|gb|EFO15747.1| DNA-directed RNA polymerase I [Loa loa]
Length = 211
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 114/146 (78%), Positives = 131/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+CHDRGYLVTQ+ELDQTL+ FKE FGDKPSE+ P+R+EL VLVAHNDDPTDQMFVFFP
Sbjct: 19 MQMCHDRGYLVTQEELDQTLENFKETFGDKPSERHPSRNELTVLVAHNDDPTDQMFVFFP 78
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ KIGIKTIK CQ+MQE+ I RAIIVVQTGMTPSAKQ++ DMAPKY LE FLE+EL++
Sbjct: 79 EDSKIGIKTIKAICQQMQEQAITRAIIVVQTGMTPSAKQAIADMAPKYTLEQFLEAELMV 138
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EEK ELL RY
Sbjct: 139 NITEHELVPEHVVMTNEEKNELLGRY 164
>gi|324521545|gb|ADY47878.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Ascaris
suum]
Length = 211
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 112/146 (76%), Positives = 129/146 (88%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+CHDRGYLVTQ+ELDQTLD FKE FGDKPSE++P R+EL +LVAHNDDPTDQMFVFFP
Sbjct: 19 MQMCHDRGYLVTQEELDQTLDNFKETFGDKPSERKPGRNELTILVAHNDDPTDQMFVFFP 78
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ KIGIKTIK CQ+MQE+ I RAIIVVQ GMTPSAKQ++ DMAPKY LE FLE+EL++
Sbjct: 79 EDAKIGIKTIKAICQQMQEQAITRAIIVVQAGMTPSAKQAITDMAPKYTLEQFLEAELMV 138
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+ EEK ELL RY
Sbjct: 139 NITEHELVPEHVVMNNEEKTELLARY 164
>gi|225718552|gb|ACO15122.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Caligus
clemensi]
Length = 210
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 112/136 (82%), Positives = 127/136 (93%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M LCHDRGYLVTQDELDQT DQFK QFGDKPSEK+P+R++L +LVAHNDDPTDQMFVFFP
Sbjct: 18 MSLCHDRGYLVTQDELDQTQDQFKVQFGDKPSEKQPSRNDLTILVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++PKIG+K I+TYC+RMQEE I RAIIVVQ GMTPSAKQSL+DMAPKYILE FLESELLI
Sbjct: 78 EDPKIGVKHIRTYCKRMQEENITRAIIVVQAGMTPSAKQSLMDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTP 136
N+TEH+LVPEH+V+TP
Sbjct: 138 NLTEHDLVPEHVVMTP 153
>gi|402589264|gb|EJW83196.1| DNA-directed RNA polymerase I [Wuchereria bancrofti]
Length = 191
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 112/144 (77%), Positives = 129/144 (89%)
Query: 3 LCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDE 62
+CHDRGYLVTQ+ELDQTL+ FKE FGDKPSE+ P+R+EL VLVAHNDDPTDQMFVFFP++
Sbjct: 1 MCHDRGYLVTQEELDQTLENFKETFGDKPSERHPSRNELTVLVAHNDDPTDQMFVFFPED 60
Query: 63 PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINI 122
KIGIKTIK CQ+MQE+ I RAIIVVQTGMTPSAKQ++ DMAPKY LE FLE+EL++NI
Sbjct: 61 SKIGIKTIKAICQQMQEQAITRAIIVVQTGMTPSAKQAIADMAPKYTLEQFLEAELMVNI 120
Query: 123 TEHELVPEHIVLTPEEKQELLTRY 146
TEHELVPEH+V+T EEK ELL RY
Sbjct: 121 TEHELVPEHVVMTNEEKNELLGRY 144
>gi|290462657|gb|ADD24376.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Lepeophtheirus salmonis]
Length = 210
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 112/136 (82%), Positives = 128/136 (94%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M LCHDRGYLVTQDELDQT++QFK QFGDKPSEK+P+R++L +LVAHNDDPTDQMFVFFP
Sbjct: 18 MCLCHDRGYLVTQDELDQTIEQFKIQFGDKPSEKQPSRNDLTILVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++PKIGIK I+TYC+RMQEE I RAIIVVQ GMTPSAKQSL+DMAPKYILE FLESELLI
Sbjct: 78 EDPKIGIKHIRTYCKRMQEENITRAIIVVQAGMTPSAKQSLMDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTP 136
N+TEH+LVPEH+V+TP
Sbjct: 138 NLTEHDLVPEHVVMTP 153
>gi|17507947|ref|NP_491961.1| Protein RPB-5 [Caenorhabditis elegans]
gi|54036433|sp|Q9N5K2.1|RPAB1_CAEEL RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
gi|351064177|emb|CCD72467.1| Protein RPB-5 [Caenorhabditis elegans]
Length = 211
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 110/146 (75%), Positives = 130/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ HDRGYLV QDELDQ L+ FK Q+GD+PSEK+PARS+L +LVAHNDDP DQMFVFFP
Sbjct: 19 LQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAHNDDPADQMFVFFP 78
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ KIGIKTIK CQ+MQE+ I RAIIVVQTGMTPSAKQS+ DMAPKY+LE+FLE+EL++
Sbjct: 79 EDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMV 138
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EEK ELL RY
Sbjct: 139 NITEHELVPEHVVMTAEEKAELLARY 164
>gi|341885241|gb|EGT41176.1| CBN-RPB-5 protein [Caenorhabditis brenneri]
gi|341885706|gb|EGT41641.1| hypothetical protein CAEBREN_11585 [Caenorhabditis brenneri]
Length = 211
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 110/146 (75%), Positives = 130/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ HDRGYLV Q+ELDQ L+ FKE FGD+PSEK+PAR++L +LVAHNDDP DQMFVFFP
Sbjct: 19 LQMVHDRGYLVAQEELDQPLEHFKETFGDRPSEKKPARADLTILVAHNDDPADQMFVFFP 78
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
D+ KIGIKTIK CQ+MQE+ I RAIIVVQTGMTPSAKQS+ DMAPKY+LE+FLE+EL++
Sbjct: 79 DDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMV 138
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EEK ELL RY
Sbjct: 139 NITEHELVPEHVVMTSEEKAELLARY 164
>gi|156396586|ref|XP_001637474.1| predicted protein [Nematostella vectensis]
gi|156224586|gb|EDO45411.1| predicted protein [Nematostella vectensis]
Length = 207
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 112/146 (76%), Positives = 133/146 (91%), Gaps = 3/146 (2%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+C+ L+ +DELD+TL+QFKEQFGD+PSE RP+RS+L +LVAHNDDPTDQMFVFFP
Sbjct: 18 MQVCNG---LILRDELDKTLEQFKEQFGDRPSEGRPSRSDLSILVAHNDDPTDQMFVFFP 74
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQ+LVDMAPKYILE F+E+EL+I
Sbjct: 75 EEPKVGIKTIKQYCQRMQEENISRAVIVVQLGMTPSAKQALVDMAPKYILEQFVEAELMI 134
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+++TP+EKQELL RY
Sbjct: 135 NITEHELVPEHVLMTPDEKQELLLRY 160
>gi|268568358|ref|XP_002640230.1| C. briggsae CBR-RPB-5 protein [Caenorhabditis briggsae]
gi|296439763|sp|A8XGH1.1|RPAB1_CAEBR RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
Length = 211
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 110/146 (75%), Positives = 130/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ HDRGYLV Q+ELDQ L+ FKE FGD+PSEK+PARS+L +LVAHNDDP DQMFVFFP
Sbjct: 19 LQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTILVAHNDDPADQMFVFFP 78
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ KIGIKTIK CQ+MQE+ I RAIIVVQTGMTPSAKQS+ DMAPKY+LE+FLE+EL++
Sbjct: 79 EDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMV 138
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EEK ELL RY
Sbjct: 139 NITEHELVPEHVVMTAEEKAELLARY 164
>gi|241017563|gb|ACS66689.1| RNA polymerase II B subunit [Caenorhabditis brenneri]
Length = 211
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/146 (75%), Positives = 129/146 (88%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ HDRGYLV Q+ELDQ L FKE FGD+PSEK+PAR++L +LVAHNDDP DQMFVFFP
Sbjct: 19 LQMVHDRGYLVAQEELDQPLGHFKETFGDRPSEKKPARADLTILVAHNDDPADQMFVFFP 78
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
D+ KIGIKTIK CQ+MQE+ I RAIIVVQTGMTPSAKQS+ DMAPKY+LE+FLE+EL++
Sbjct: 79 DDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMV 138
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EEK ELL RY
Sbjct: 139 NITEHELVPEHVVMTSEEKAELLARY 164
>gi|308505230|ref|XP_003114798.1| CRE-RPB-5 protein [Caenorhabditis remanei]
gi|308258980|gb|EFP02933.1| CRE-RPB-5 protein [Caenorhabditis remanei]
Length = 211
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 107/146 (73%), Positives = 130/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ HDRGYLV Q+ELDQ L+ FKEQ+GD+PSEK+PARS+L +LVAHNDDP DQMFVFFP
Sbjct: 19 LQMVHDRGYLVAQEELDQPLETFKEQYGDRPSEKKPARSDLTILVAHNDDPADQMFVFFP 78
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ KIGIKTIK CQ+MQE+ I RA+IVVQ GMTPSAKQS+ DMAPKY+LE+FLE+EL++
Sbjct: 79 EDTKIGIKTIKAICQQMQEQNISRAVIVVQIGMTPSAKQSIGDMAPKYMLEHFLEAELMV 138
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T +EK ELL RY
Sbjct: 139 NITEHELVPEHVVMTADEKAELLARY 164
>gi|195150967|ref|XP_002016421.1| GL10501 [Drosophila persimilis]
gi|194110268|gb|EDW32311.1| GL10501 [Drosophila persimilis]
Length = 210
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 106/146 (72%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+CHDRGYLVTQ+ELDQTL F+E FGD+PSE P+R+++ +LVAHNDDPTDQMFVFFP
Sbjct: 18 LQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIK IK YC RMQEE+I+RAIIVVQ +TPSA+Q+LV+MAPKY+LE FLE+EL+
Sbjct: 78 EEPKVGIKDIKRYCLRMQEESIYRAIIVVQNSITPSARQALVEMAPKYVLEQFLEAELMF 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITE+E VPEH+V+TP+EKQELL+RY
Sbjct: 138 NITENENVPEHVVMTPDEKQELLSRY 163
>gi|198457753|ref|XP_002138441.1| GA24393 [Drosophila pseudoobscura pseudoobscura]
gi|198136092|gb|EDY68999.1| GA24393 [Drosophila pseudoobscura pseudoobscura]
Length = 210
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 106/146 (72%), Positives = 131/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+CHDRGYLVTQ+ELDQTL F+E FGD+PSE P+R+++ +LVAHNDDPTDQMFVFFP
Sbjct: 18 LQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
EPK+GIK IK YC RMQEE+I+RAIIVVQ +TPSA+Q+LV+MAPKY+LE FLE+EL+
Sbjct: 78 QEPKVGIKDIKRYCLRMQEESIYRAIIVVQNSITPSARQALVEMAPKYVLEQFLEAELMF 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITE+E VPEH+V+TP+EKQELL+RY
Sbjct: 138 NITENENVPEHVVMTPDEKQELLSRY 163
>gi|149034610|gb|EDL89347.1| rCG29511, isoform CRA_c [Rattus norvegicus]
Length = 146
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 108/129 (83%), Positives = 117/129 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKY+LE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLI 137
Query: 121 NITEHELVP 129
NITEHE P
Sbjct: 138 NITEHEQAP 146
>gi|380800089|gb|AFE71920.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1, partial
[Macaca mulatta]
Length = 181
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 110/134 (82%), Positives = 120/134 (89%)
Query: 13 QDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDEPKIGIKTIKT 72
QDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP+EPK+GIKTIK
Sbjct: 1 QDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKV 60
Query: 73 YCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELVPEHI 132
YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLINITEHELVPEH+
Sbjct: 61 YCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHV 120
Query: 133 VLTPEEKQELLTRY 146
V+T EE ELL RY
Sbjct: 121 VMTKEEVTELLARY 134
>gi|432101146|gb|ELK29430.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Myotis
davidii]
Length = 203
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 108/126 (85%), Positives = 116/126 (92%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHE 126
NITEHE
Sbjct: 138 NITEHE 143
>gi|209738396|gb|ACI70067.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
Length = 159
Score = 231 bits (589), Expect = 7e-58, Method: Composition-based stats.
Identities = 109/127 (85%), Positives = 116/127 (91%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLD+FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHEL 127
NITEHE+
Sbjct: 138 NITEHEV 144
>gi|351714028|gb|EHB16947.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Heterocephalus glaber]
Length = 292
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/126 (84%), Positives = 115/126 (91%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE P R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGHPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHE 126
NITEHE
Sbjct: 138 NITEHE 143
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/87 (81%), Positives = 77/87 (88%)
Query: 60 PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
P+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELL
Sbjct: 159 PEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELL 218
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
INITEHELVPEH+V+T EE ELL RY
Sbjct: 219 INITEHELVPEHVVMTKEEVTELLARY 245
>gi|196010385|ref|XP_002115057.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190582440|gb|EDV22513.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 210
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 103/146 (70%), Positives = 123/146 (84%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+CHDRGY+V+Q+ELDQT DQF EQF + SE R L +LV H DDPT+Q+FVFFP
Sbjct: 18 MQMCHDRGYMVSQEELDQTFDQFHEQFYSEMSESSQVRGLLSMLVHHIDDPTEQLFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPK+GI TIK YCQRMQ E I+RAII++Q+GMTP+AKQSL+DMAPKY LE F+ESEL+I
Sbjct: 78 DEPKVGINTIKKYCQRMQRENINRAIIIIQSGMTPTAKQSLIDMAPKYTLESFMESELMI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEH LVP+HIV++PEEK ELL RY
Sbjct: 138 NITEHHLVPKHIVMSPEEKAELLARY 163
>gi|313226453|emb|CBY21598.1| unnamed protein product [Oikopleura dioica]
Length = 210
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 98/146 (67%), Positives = 119/146 (81%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M +CHDR YLV Q ELDQTL+QFK +FG +PS+ +P+R +L ++V H+DDPTDQMFVFFP
Sbjct: 18 MAMCHDRKYLVAQRELDQTLEQFKAEFGSQPSQGQPSRKDLTIIVCHSDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++PK+ IK +K YCQRMQEE I RA+IV+Q MTPSAKQ+L DMAPKY LE F E EL+I
Sbjct: 78 EDPKVTIKQVKIYCQRMQEENITRALIVIQQSMTPSAKQALDDMAPKYTLESFYEQELMI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
N+TEHELVP H VLT +EK ELL RY
Sbjct: 138 NLTEHELVPTHAVLTDDEKNELLKRY 163
>gi|449273017|gb|EMC82646.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1, partial
[Columba livia]
Length = 168
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/121 (82%), Positives = 108/121 (89%)
Query: 26 QFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRA 85
QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP+EPK+GIKTIK YCQRMQEE I RA
Sbjct: 1 QFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRA 60
Query: 86 IIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTR 145
+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLINITEHELVPEH+V+T EE ELL R
Sbjct: 61 LIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 120
Query: 146 Y 146
Y
Sbjct: 121 Y 121
>gi|313765818|gb|ADR80315.1| RNA polymerase B5-subunit [Rutilus rutilus]
Length = 129
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 97/111 (87%), Positives = 103/111 (92%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLD+F+ QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
+EPK+GIKTIK YCQRMQEE I RAIIVVQ GMTPSAKQSLVDMAPKYILE
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILE 128
>gi|198471708|ref|XP_002133816.1| GA22581 [Drosophila pseudoobscura pseudoobscura]
gi|198146041|gb|EDY72443.1| GA22581 [Drosophila pseudoobscura pseudoobscura]
Length = 320
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/145 (60%), Positives = 116/145 (80%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ HDRGYLVT ELDQT++QF E FGDKPSE+ P RS+L +L++H DDP ++M VFFP+
Sbjct: 19 EMSHDRGYLVTSAELDQTVEQFTELFGDKPSEQSPMRSDLTMLLSHADDPKNRMLVFFPE 78
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
EPK+ +KTIK Y RM+ E IHRAI+VV+ +TP AKQS++ MAP YI+E FLESEL IN
Sbjct: 79 EPKVAVKTIKAYAHRMEGEGIHRAILVVRDCLTPPAKQSIMAMAPLYIMEQFLESELTIN 138
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
+T+HELVP+H+VL+ EK++L Y
Sbjct: 139 VTKHELVPQHVVLSEVEKKQLFRCY 163
>gi|224087898|ref|XP_002198655.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Taeniopygia guttata]
Length = 119
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/100 (85%), Positives = 92/100 (92%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQS 100
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQS
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQS 117
>gi|339250892|ref|XP_003374431.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Trichinella spiralis]
gi|316969258|gb|EFV53386.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Trichinella spiralis]
Length = 211
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/145 (54%), Positives = 109/145 (75%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
Q+C DRG+LVT +ELDQ + F Q+GD+PSE +PARS+L LV+H +D + +FV+F D
Sbjct: 20 QMCRDRGFLVTSNELDQNFEDFVRQYGDRPSEGKPARSDLSFLVSHEEDAAENLFVYFAD 79
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E K+GIKTIK C R+Q E + RAI++VQ MT A+ S+ D++PKY LE FLE+EL++N
Sbjct: 80 EKKVGIKTIKNVCLRLQSENMSRAIMIVQEPMTAIARHSVADLSPKYRLEQFLEAELMVN 139
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
I HELVP H++++ +EK ELL RY
Sbjct: 140 IIRHELVPRHVIMSSKEKDELLDRY 164
>gi|339233930|ref|XP_003382082.1| retinol dehydrogenase 12 [Trichinella spiralis]
gi|316979012|gb|EFV61880.1| retinol dehydrogenase 12 [Trichinella spiralis]
Length = 508
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 79/145 (54%), Positives = 108/145 (74%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
Q+C DRG+LVT ELDQ + F Q+GD+PSE +PARS+L LV+H +D + +FV+F D
Sbjct: 20 QMCRDRGFLVTSYELDQNFEDFVRQYGDRPSEGKPARSDLSFLVSHEEDAAENLFVYFAD 79
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E K+GIKTIK C R+Q E + RAI++VQ MT A+ S+ D++PKY LE FLE+EL++N
Sbjct: 80 ERKVGIKTIKNVCLRLQSENMSRAIMIVQEPMTAIARHSVADLSPKYKLEQFLEAELMVN 139
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
I HELVP H++++ +EK ELL RY
Sbjct: 140 IIRHELVPRHVIMSSKEKDELLDRY 164
>gi|215399667|gb|ACJ65826.1| RNA polymerase II [Oreochromis niloticus]
Length = 108
Score = 181 bits (458), Expect = 1e-42, Method: Composition-based stats.
Identities = 85/99 (85%), Positives = 91/99 (91%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 10 MQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 69
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQ 99
+EPK+GIKTIK YCQRMQEE I RAIIVVQ GMTPSAKQ
Sbjct: 70 EEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQ 108
>gi|302854284|ref|XP_002958651.1| hypothetical protein VOLCADRAFT_109457 [Volvox carteri f.
nagariensis]
gi|300255976|gb|EFJ40254.1| hypothetical protein VOLCADRAFT_109457 [Volvox carteri f.
nagariensis]
Length = 202
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 112/146 (76%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ +DRGYLV+Q+E++ + DQF+++FG+ P + +L +LV DDPT+QMFVFFP
Sbjct: 15 LQMLNDRGYLVSQEEINTSKDQFRDRFGENPR-----KDDLTILVPKQDDPTEQMFVFFP 69
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+E K+G+KTIK +RM++E ++RAI+V TP AK +L DM PKY +E+FLESELL+
Sbjct: 70 EEQKVGVKTIKLLAERMKDEKVNRAIMVTAVKFTPFAKSALEDMRPKYCIEHFLESELLV 129
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEH LVPEH +L+P+EK+ LL RY
Sbjct: 130 NITEHTLVPEHRILSPDEKRTLLDRY 155
>gi|302795809|ref|XP_002979667.1| hypothetical protein SELMODRAFT_228648 [Selaginella moellendorffii]
gi|302807361|ref|XP_002985375.1| hypothetical protein SELMODRAFT_181697 [Selaginella moellendorffii]
gi|300146838|gb|EFJ13505.1| hypothetical protein SELMODRAFT_181697 [Selaginella moellendorffii]
gi|300152427|gb|EFJ19069.1| hypothetical protein SELMODRAFT_228648 [Selaginella moellendorffii]
Length = 206
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 107/146 (73%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DR YLV E+ T +QF+++FGD+P R +L++ A D +DQ+FVFFP
Sbjct: 19 MQMLRDRDYLVADYEVSLTKEQFRDKFGDEPK-----RDDLVISKAKRSDQSDQIFVFFP 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+G+KTIKTY +RM+ E + RAI+VVQT +TP AKQ L +MAPKY +E F E+ELL+
Sbjct: 74 EEPKVGVKTIKTYAERMKSELVFRAIMVVQTSLTPFAKQCLSEMAPKYQIEVFQEAELLV 133
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVPEH VL+ EEK+ LL RY
Sbjct: 134 NIKEHTLVPEHQVLSAEEKKTLLERY 159
>gi|159479030|ref|XP_001697601.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158274211|gb|EDO99994.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 206
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 112/146 (76%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ +DRGYLV+Q+E+ T DQF+++FG+ P + +L +LV DDPT+Q+FVFFP
Sbjct: 15 LQMLNDRGYLVSQEEIGTTKDQFRDRFGENPR-----KDDLTILVPRQDDPTEQIFVFFP 69
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+E K+G+KTIK +RM++E ++RAI+V + TP AK +L DM PKY +E+FLESELL+
Sbjct: 70 EEQKVGVKTIKLLAERMKDEKVNRAIMVTPSKFTPFAKSALEDMRPKYHIEHFLESELLV 129
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEH LVPEH +L+P+EK+ LL RY
Sbjct: 130 NITEHVLVPEHRILSPDEKRTLLDRY 155
>gi|241696177|ref|XP_002411834.1| RNA polymerase, 25-kDa subunit, putative [Ixodes scapularis]
gi|215504757|gb|EEC14251.1| RNA polymerase, 25-kDa subunit, putative [Ixodes scapularis]
Length = 91
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 82/91 (90%), Positives = 85/91 (93%)
Query: 55 MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFL 114
MFVFFPDEPKIGIKTIKTYCQRMQEE I RAIIVVQ GMTPSAKQ+L DMAPKYILE+FL
Sbjct: 1 MFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALGDMAPKYILEHFL 60
Query: 115 ESELLINITEHELVPEHIVLTPEEKQELLTR 145
ESELLINITEHELVPEH+VLTPEEK ELL R
Sbjct: 61 ESELLINITEHELVPEHVVLTPEEKAELLAR 91
>gi|384249623|gb|EIE23104.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Coccomyxa
subellipsoidea C-169]
Length = 202
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 106/146 (72%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ HDRGYL+ QD+ T + FK++FGD P + +L VL DDPT+Q+FVF+P
Sbjct: 15 LEMLHDRGYLIAQDDRQMTKEGFKDRFGDDPR-----KDDLTVLAPKQDDPTEQIFVFYP 69
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+E K+G+KTIKT+ +RM+ E + RAI+V MTP AKQ L +MAPKY +E F +ELLI
Sbjct: 70 EEDKVGVKTIKTFAERMRNEGVSRAIMVTMASMTPFAKQCLAEMAPKYYIEVFNAAELLI 129
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+H LVPEH +LTPEEK+ LL RY
Sbjct: 130 NITQHVLVPEHHLLTPEEKRTLLDRY 155
>gi|350018416|dbj|GAA37368.1| DNA-directed RNA polymerases I II and III subunit RPABC1
[Clonorchis sinensis]
Length = 206
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 110/147 (74%), Gaps = 6/147 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++C DRGYLV EL+QTLD FK GD PS R +L+++V H +DP D ++VFFP
Sbjct: 18 LKMCKDRGYLVMPKELEQTLDDFKLSVGDPPS-----RKDLLMVVNHEEDPADMLYVFFP 72
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQ-TGMTPSAKQSLVDMAPKYILEYFLESELL 119
DE K+ +KTI+ Y +MQ+++ +RAI+V+Q G+TP AK +L +++ KY LE F E+EL+
Sbjct: 73 DEEKVNMKTIRAYLNQMQQDSTYRAILVLQEKGLTPFAKTALAELSCKYTLECFFETELM 132
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NITEH+LVP+H VLT EEK+ELL RY
Sbjct: 133 VNITEHQLVPQHNVLTQEEKKELLERY 159
>gi|56755813|gb|AAW26085.1| SJCHGC05306 protein [Schistosoma japonicum]
gi|226469816|emb|CAX70189.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
gi|226469818|emb|CAX70190.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
gi|226487596|emb|CAX74668.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
Length = 206
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 111/147 (75%), Gaps = 6/147 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++C DRGYLV EL+Q+L+ FK GD P AR +L+++V H +DP D ++VFFP
Sbjct: 18 LKMCKDRGYLVMPKELEQSLEDFKATVGDPP-----ARKDLLMVVNHEEDPADMLYVFFP 72
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQ-TGMTPSAKQSLVDMAPKYILEYFLESELL 119
+E K+ +KT++ Y +MQ+++ +RAI+V+Q G+TPSAK ++ +++ KY LE F E+EL+
Sbjct: 73 EEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFENELM 132
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NITEH+LVP+H VLT EEK+ELL RY
Sbjct: 133 VNITEHQLVPQHDVLTQEEKKELLERY 159
>gi|325181796|emb|CCA16252.1| DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]
Length = 210
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 109/146 (74%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ H+RGY+V+++EL T + F++QFGD P+ R + +LV DDP+D +FVFFP
Sbjct: 23 VKMLHNRGYIVSENELIMTPEGFQQQFGDNPT-----REMMTILVEKIDDPSDNLFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ K+G+K I+ YC RM++E + +AI+VVQ G+TP A+Q+L +MAP+Y +E+F E+ELL+
Sbjct: 78 EDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPRYKIEHFKETELLV 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
+ITEH LVP H VL EEK LL RY
Sbjct: 138 DITEHTLVPVHRVLCREEKAALLKRY 163
>gi|256071874|ref|XP_002572263.1| DNA-directed RNA polymerase II [Schistosoma mansoni]
Length = 208
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 111/147 (75%), Gaps = 6/147 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++C DRGYLV EL+Q+L+ FK GD P+ R +L+++V H +DP D ++VFFP
Sbjct: 20 LKMCKDRGYLVMPKELEQSLEDFKATVGDPPT-----RKDLLMVVNHEEDPADMLYVFFP 74
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQ-TGMTPSAKQSLVDMAPKYILEYFLESELL 119
+E K+ +KT++ Y +MQ+++ +RAI+V+Q G+TPSAK ++ +++ KY LE F E+EL+
Sbjct: 75 EEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFENELM 134
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NITEH+LVP+H VLT EEK+ELL RY
Sbjct: 135 VNITEHQLVPQHNVLTQEEKKELLERY 161
>gi|360043810|emb|CCD81356.1| putative dna-directed RNA polymerase II [Schistosoma mansoni]
Length = 205
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 111/147 (75%), Gaps = 6/147 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++C DRGYLV EL+Q+L+ FK GD P+ R +L+++V H +DP D ++VFFP
Sbjct: 17 LKMCKDRGYLVMPKELEQSLEDFKATVGDPPT-----RKDLLMVVNHEEDPADMLYVFFP 71
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQ-TGMTPSAKQSLVDMAPKYILEYFLESELL 119
+E K+ +KT++ Y +MQ+++ +RAI+V+Q G+TPSAK ++ +++ KY LE F E+EL+
Sbjct: 72 EEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFENELM 131
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NITEH+LVP+H VLT EEK+ELL RY
Sbjct: 132 VNITEHQLVPQHNVLTQEEKKELLERY 158
>gi|197259982|gb|ACH56539.1| RNA polymerase II [Scophthalmus maximus]
Length = 87
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 74/87 (85%), Positives = 79/87 (90%)
Query: 13 QDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDEPKIGIKTIKT 72
QDELDQTLD+FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP+EPK+GIKTIK
Sbjct: 1 QDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKM 60
Query: 73 YCQRMQEETIHRAIIVVQTGMTPSAKQ 99
YCQRMQEE I RAIIVVQ GMTPSAKQ
Sbjct: 61 YCQRMQEENITRAIIVVQMGMTPSAKQ 87
>gi|348680008|gb|EGZ19824.1| hypothetical protein PHYSODRAFT_494802 [Phytophthora sojae]
Length = 206
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 108/146 (73%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ H+RGY+V+++EL T + F+ QFGD P+ R + +LV DDP+D +FVFFP
Sbjct: 19 VKMLHNRGYIVSENELVMTPEAFQAQFGDNPT-----REMMTILVEKIDDPSDNLFVFFP 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ K+G+K I+ YC RM++E + +AI+VVQ G+TP A+Q+L +MAP+Y +E+F E+ELL+
Sbjct: 74 EDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPRYKIEHFKETELLV 133
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
+ITEH LVP H VL +EK LL RY
Sbjct: 134 DITEHTLVPVHRVLGRDEKAALLKRY 159
>gi|301106302|ref|XP_002902234.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Phytophthora infestans T30-4]
gi|262098854|gb|EEY56906.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Phytophthora infestans T30-4]
Length = 206
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 106/146 (72%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ H+R Y+V+++EL T + F+ QFGD P+ R + +LV DDP+D +FVFFP
Sbjct: 19 VKMLHNRSYIVSENELVMTPEAFQTQFGDNPT-----REMMTILVEKIDDPSDNLFVFFP 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ K+G+K I+ YC RM++E + +AI+VVQ G+TP A+Q+L +MAP+Y +E+F E+ELL+
Sbjct: 74 EDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPRYKIEHFKETELLV 133
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
+ITEH LVP H VL EK LL RY
Sbjct: 134 DITEHTLVPVHRVLDRNEKAALLKRY 159
>gi|307106700|gb|EFN54945.1| hypothetical protein CHLNCDRAFT_134695 [Chlorella variabilis]
Length = 190
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 103/146 (70%), Gaps = 11/146 (7%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGYL+T++E D T DQF +++G P +R + DDPT+Q+FVFFP
Sbjct: 9 LEMLADRGYLITEEERDATRDQFTDKYG--PDIRREDLT---------DDPTEQIFVFFP 57
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+E K+G+KTIK +RM+ E + RA++V Q MTP AKQ L +MAPKY +E F E+ELL+
Sbjct: 58 EEAKVGVKTIKLLAERMRNEGVQRAVMVTQANMTPFAKQCLSEMAPKYYIELFQEAELLV 117
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+H LVP+H +LT EEKQ LL RY
Sbjct: 118 NITKHTLVPQHRILTREEKQTLLDRY 143
>gi|308803436|ref|XP_003079031.1| RNA polymerase I, II and III 24.3 kDa subunit (ISS) [Ostreococcus
tauri]
gi|116057485|emb|CAL51912.1| RNA polymerase I, II and III 24.3 kDa subunit (ISS) [Ostreococcus
tauri]
Length = 1124
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 100/141 (70%), Gaps = 6/141 (4%)
Query: 7 RGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDEPKIG 66
RGYLV+ EL++ D F E+FG++P R L +L DDP++ +FVFFPDE K+G
Sbjct: 942 RGYLVSARELERDADSFAEEFGEEPK-----RDSLTILAPRKDDPSENIFVFFPDEEKVG 996
Query: 67 IKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM-APKYILEYFLESELLINITEH 125
+KTIK +RM+EE + RAIIVVQ +TP AKQSL++ K+ +E F E+ELL+NI +H
Sbjct: 997 VKTIKDLAKRMKEENVFRAIIVVQASLTPFAKQSLLECQTQKFYIEQFQETELLVNIVDH 1056
Query: 126 ELVPEHIVLTPEEKQELLTRY 146
LVPEHI+L+ E+K+ LL RY
Sbjct: 1057 VLVPEHILLSDEQKRTLLERY 1077
>gi|440803359|gb|ELR24265.1| RNA polymerase Rpb5, Cterminal domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 204
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 103/146 (70%), Gaps = 3/146 (2%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ DRGY+V Q +LD D F+ +F + + R A L +L+ DDPTDQ+FVF+P
Sbjct: 15 LQMLQDRGYIVPQSDLDMDRDSFRSKFMGESALNREA---LTLLMQKKDDPTDQIFVFWP 71
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ K+G++ +K YC RM+EE + RAI+++Q +T AKQ +MAP+Y +E+F E+ELL+
Sbjct: 72 EDLKVGVRPVKKYCDRMKEEAVFRAIVIIQQTLTAFAKQVFAEMAPRYTIEHFQEAELLV 131
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEH LVP+H +LT EKQ LL +Y
Sbjct: 132 NITEHILVPKHKLLTELEKQTLLAKY 157
>gi|303282333|ref|XP_003060458.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457929|gb|EEH55227.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 206
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 105/146 (71%), Gaps = 6/146 (4%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ + RGYLV Q EL++ D F+E +GD P R L +++ DDP++ +FVFFP+
Sbjct: 19 KMLNARGYLVQQKELERDKDSFREAYGDDPK-----RESLTLMLPRRDDPSENIFVFFPE 73
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPK-YILEYFLESELLI 120
E K+G+KTIK Y +RM++E++ RAIIVVQ +TP AKQSL++ A + + +E F E ELL+
Sbjct: 74 EEKVGVKTIKEYAKRMKDESVFRAIIVVQASLTPFAKQSLLECASQSFYIEQFQEMELLV 133
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEH LVPEH++L+ EK+ LL RY
Sbjct: 134 NITEHVLVPEHVLLSDAEKRTLLARY 159
>gi|192910670|gb|ACF06443.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Elaeis
guineensis]
Length = 204
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 101/146 (69%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DRGYLV E++ QF E+FG+ R +L++ A +DP DQ++VFFP
Sbjct: 17 MQMLRDRGYLVLDLEINMNKLQFLEKFGEGVK-----REDLVINKAKKNDPADQIYVFFP 71
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ K+G+K IK Y +RM+ E + R I+VVQ +TP A+QSL +++ KY+LE F ++ELL+
Sbjct: 72 NDAKVGVKQIKQYVERMKAENVTRGILVVQQALTPFARQSLAEVSQKYMLEVFQDTELLV 131
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVPEH VLT EEK+ LL RY
Sbjct: 132 NIKEHVLVPEHQVLTSEEKKTLLERY 157
>gi|412988339|emb|CCO17675.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Bathycoccus prasinos]
Length = 205
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 107/146 (73%), Gaps = 7/146 (4%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ RGYLV+Q EL++ D F E+FG+ +R L ++V DDP++ +FVFFP+
Sbjct: 19 KMLASRGYLVSQKELERDKDSFLEEFGE------VSREHLTIMVPKRDDPSENIFVFFPE 72
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM-APKYILEYFLESELLI 120
E K+G+K IK Y +RM+EE + RAIIV+++ +TP AKQSL+++ K+I+E F E+ELL+
Sbjct: 73 EEKVGVKMIKDYAKRMREENVMRAIIVIRSSLTPFAKQSLLEVQQQKFIIETFQETELLV 132
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+H LVP+H++LT EEK+ LL RY
Sbjct: 133 NITDHILVPKHVLLTDEEKKTLLERY 158
>gi|296232401|ref|XP_002761575.1| PREDICTED: uncharacterized protein LOC100393628 [Callithrix
jacchus]
Length = 323
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/93 (76%), Positives = 78/93 (83%)
Query: 54 QMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYF 113
Q + +EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE F
Sbjct: 184 QAGILSTEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQF 243
Query: 114 LESELLINITEHELVPEHIVLTPEEKQELLTRY 146
L+ ELLINITEHELVPEH+V+T EE ELL RY
Sbjct: 244 LQQELLINITEHELVPEHVVMTKEEVTELLARY 276
>gi|168011548|ref|XP_001758465.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690500|gb|EDQ76867.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 101/146 (69%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M++ DR Y+V EL + +QF+E++GD+P R +L++ + + +FVFFP
Sbjct: 21 MEMLRDRDYVVADYELTLSKEQFREKYGDEPK-----REDLVIQKPRRSNNAEHIFVFFP 75
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+E K+G+KTIKTY RM+ E +HRAI+VVQ +TP A+Q + +MA KY LE F E+ELL+
Sbjct: 76 EEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMASKYHLEVFQEAELLV 135
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVP H VLTP+EK+ LL RY
Sbjct: 136 NIKEHVLVPLHEVLTPDEKKTLLERY 161
>gi|255085448|ref|XP_002505155.1| predicted protein [Micromonas sp. RCC299]
gi|226520424|gb|ACO66413.1| predicted protein [Micromonas sp. RCC299]
Length = 204
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 104/146 (71%), Gaps = 6/146 (4%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ + RGYLV Q ELD+ D F E+FG+ P R L + +DPT +FVFFPD
Sbjct: 17 KMLNARGYLVAQAELDRDKDSFTEEFGEDPR-----RDALTLQFDLREDPTQHIFVFFPD 71
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM-APKYILEYFLESELLI 120
E K+G+KTIK Y +RM++E ++RAIIVVQ +TP A+QSL++ A K+ +E F E+ELL+
Sbjct: 72 EEKVGVKTIKEYAKRMKDEQVNRAIIVVQQSLTPFARQSLLECQAQKFYIEQFQEAELLV 131
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+H LVPEHI+L+ E+K+ LL RY
Sbjct: 132 NITDHVLVPEHILLSDEQKRVLLDRY 157
>gi|344307865|ref|XP_003422599.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Loxodonta africana]
Length = 224
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 76/86 (88%)
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 92 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 151
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 152 NITEHELVPEHVVMTKEEVTELLARY 177
>gi|351723363|ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycine max]
gi|255625665|gb|ACU13177.1| unknown [Glycine max]
Length = 206
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 101/146 (69%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DRG+LV E++ + +FK ++G+ R +L++ + D+ DQ++VFFP
Sbjct: 19 MQMLRDRGFLVGDFEINMSKHEFKSKYGEHMK-----REDLVINKSKKDNSGDQIYVFFP 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPK+G+KT+KTY RM E ++RAI+V QT +TP A+ + +++ K+ LE F E+ELL+
Sbjct: 74 DEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQEAELLV 133
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EHELVPEH VLT EK+ LL RY
Sbjct: 134 NIKEHELVPEHQVLTDAEKKTLLERY 159
>gi|432855570|ref|XP_004068252.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Oryzias latipes]
Length = 159
Score = 146 bits (368), Expect = 3e-32, Method: Composition-based stats.
Identities = 72/85 (84%), Positives = 75/85 (88%)
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
EPK+GIKTIK YCQRMQEE I RAIIVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLIN
Sbjct: 28 EPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLIN 87
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
ITEHELVPEHIV+T EE ELL RY
Sbjct: 88 ITEHELVPEHIVMTKEEVTELLARY 112
>gi|145346274|ref|XP_001417617.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577844|gb|ABO95910.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 205
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 100/141 (70%), Gaps = 6/141 (4%)
Query: 7 RGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDEPKIG 66
RGYLV+ EL++ +D F E FG++P R L +L DDP++ +FVFFPDE K+G
Sbjct: 23 RGYLVSAKELERDIDSFTEDFGEEPK-----RESLTILAPKRDDPSENIFVFFPDEEKVG 77
Query: 67 IKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM-APKYILEYFLESELLINITEH 125
+KTIK +RM++E + RAIIVVQ +TP AKQSL++ K+ +E F E+ELL+NI +H
Sbjct: 78 VKTIKDLAKRMKDENVFRAIIVVQASLTPFAKQSLLECQTQKFYIEQFQETELLVNIIDH 137
Query: 126 ELVPEHIVLTPEEKQELLTRY 146
LVPEHI+L+ ++K+ LL RY
Sbjct: 138 VLVPEHILLSDDQKRTLLDRY 158
>gi|15228724|ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5 [Arabidopsis thaliana]
gi|3372233|gb|AAC28253.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|9293866|dbj|BAB01769.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
Length = 205
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 96/146 (65%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DRGY + EL T QF + GD R +L+ L A +D +DQ+++FFP
Sbjct: 18 MQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKAKRNDNSDQLYIFFP 72
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DE K+G+KT+K Y RM+ E + RAI+VVQ +TP A+ + +++ K+ LE F E+E+L+
Sbjct: 73 DEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLV 132
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVPEH VLT EEK+ LL RY
Sbjct: 133 NIKEHVLVPEHQVLTTEEKKTLLERY 158
>gi|168003716|ref|XP_001754558.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694179|gb|EDQ80528.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 101/146 (69%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M++ DR Y+V + EL+ T ++F+E++GD+P R +L++ + + +FVFFP
Sbjct: 21 MEMLRDRDYVVAEFELNSTKEEFREKYGDEPK-----REDLVIQKPKRSNNAEHIFVFFP 75
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+E K+G+KTIKTY RM+ E +HRAI+VVQ +TP A+Q + +M+ KY +E F E+ELL+
Sbjct: 76 EEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMSSKYHVEVFQEAELLV 135
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI +H LVP+H VL EEK LL RY
Sbjct: 136 NIKDHVLVPQHEVLNAEEKITLLQRY 161
>gi|116785870|gb|ABK23892.1| unknown [Picea sitchensis]
Length = 191
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 105/146 (71%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ +DR YLV E++ T +QF ++FG+ P + +L++ A + P++Q+FVFFP
Sbjct: 18 LQMLNDRDYLVGDFEINTTKEQFLDKFGEDPK-----KEDLVINKAKRNSPSEQIFVFFP 72
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+E K+G+K+IKTY +RM+ E + RAI+VVQ +TP A+QS+ + + K+ LE F E+ELL+
Sbjct: 73 EEAKVGVKSIKTYVERMKSEGVFRAILVVQQALTPFARQSVQEFSGKFHLEVFQEAELLV 132
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVPE +LTPEEK+ LL RY
Sbjct: 133 NIKEHVLVPEQQILTPEEKKTLLERY 158
>gi|297835232|ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
Length = 205
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 96/146 (65%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DRGY + EL T QF + GD R +L+ L +D +DQ+++FFP
Sbjct: 18 MQMLKDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKVKRNDNSDQLYIFFP 72
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DE K+G+KT+K Y RM+ E ++RAI+VVQ +TP A+ + +++ K+ LE F E+E+L+
Sbjct: 73 DEAKVGVKTMKMYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLV 132
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVPEH VLT EEK+ LL RY
Sbjct: 133 NIKEHVLVPEHQVLTTEEKKTLLERY 158
>gi|351722355|ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycine max]
gi|255627545|gb|ACU14117.1| unknown [Glycine max]
Length = 206
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 100/146 (68%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DR +LV E++ + +FK ++G+ R +L++ + D+ DQ++VFFP
Sbjct: 19 MQMLRDRNFLVGDFEINMSKHEFKSKYGEHMK-----REDLVINKSKKDNSGDQIYVFFP 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPK+G+KT+KTY RM E ++RAI+V QT +TP A+ + +++ K+ LE F E+ELL+
Sbjct: 74 DEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQEAELLV 133
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EHELVPEH VLT EK+ LL RY
Sbjct: 134 NIKEHELVPEHQVLTDAEKKTLLERY 159
>gi|323449166|gb|EGB05056.1| hypothetical protein AURANDRAFT_31430 [Aureococcus anophagefferens]
Length = 204
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 103/146 (70%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ R Y+V +L+ + + F+EQFG++P R++L +L H D DQ+F+F P
Sbjct: 17 LKMLKKRNYVVDVAQLEMSSEAFQEQFGEQPK-----RTDLTILAEHETDAEDQVFIFLP 71
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DE K+G+KTIK YC+ M+E ++ AI+VV+ G+TP AK +L +MA Y++E+F ++ELL+
Sbjct: 72 DEEKVGVKTIKQYCEMMKEASVSHAILVVKAGITPFAKTALQEMASMYLIEHFRDNELLV 131
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
+ITEH+LVP H L+PE+K LL RY
Sbjct: 132 DITEHKLVPAHQPLSPEDKAALLKRY 157
>gi|225445170|ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Vitis vinifera]
gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Vitis vinifera]
Length = 206
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 98/146 (67%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DRGY V E++ T QF +FG+ R +L++ A D +DQ++VFFP
Sbjct: 19 MQMLKDRGYFVGDFEINMTKHQFVSKFGENMK-----REDLVINKAKRTDSSDQIYVFFP 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+E K+G+KT+KTY RM+ E + RAI+VVQ +TP A+ + +++ K+ LE F E+ELL+
Sbjct: 74 EEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQEAELLV 133
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVPEH VLT EEK+ LL RY
Sbjct: 134 NIKEHVLVPEHQVLTSEEKKTLLERY 159
>gi|449019061|dbj|BAM82463.1| RNA polymerase I, II, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 211
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 104/148 (70%), Gaps = 6/148 (4%)
Query: 1 MQLCHDRGYLV--TQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVF 58
+++ DRGYLV T+ +L+ L++F +F AR L +L H +D ++Q++VF
Sbjct: 21 LEMLRDRGYLVLPTKTDLELPLEEFAHKFDAAGR----ARESLTMLRQHRNDRSNQIYVF 76
Query: 59 FPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESEL 118
FP E K+G+K I+ YC R++ E + RAIIVVQTG+TP AKQ++ ++ P++ LE F E+EL
Sbjct: 77 FPKEEKVGVKPIREYCLRLETENVLRAIIVVQTGLTPIAKQAVAELQPRFHLELFQEAEL 136
Query: 119 LINITEHELVPEHIVLTPEEKQELLTRY 146
L+NIT H+LVP+H VLT E+K+ LL RY
Sbjct: 137 LVNITRHQLVPKHEVLTAEQKKTLLKRY 164
>gi|388499936|gb|AFK38034.1| unknown [Lotus japonicus]
Length = 206
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 96/146 (65%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DR YLV E++ + +FK ++GD R +L + D P+DQ++VFFP
Sbjct: 19 MQMLRDRNYLVGDFEINMSRHEFKTKYGDNMK-----REDLTINKTKKDGPSDQIYVFFP 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DEPK+G+KT+KTY RM E + RAI+V Q+ +TP AK + +M+ K+ LE F E+ELL+
Sbjct: 74 DEPKVGVKTMKTYTNRMNSENVFRAILVCQSNLTPFAKTCISEMSSKFQLEVFQEAELLV 133
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVPEH +L EK+ LL RY
Sbjct: 134 NIKEHVLVPEHQILNETEKKTLLERY 159
>gi|357480733|ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355511987|gb|AES93610.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 410
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 97/146 (66%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DR YLV EL+ + FK+++G+ R +L++ D P+DQ++VFFP
Sbjct: 223 MQMLKDRNYLVGDFELNMSKHDFKDKYGENMK-----REDLVINKTKKDKPSDQIYVFFP 277
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+E K+G+KT+KTY RM E ++RAI+V QT +TP AK + ++A K+ LE F E+ELL+
Sbjct: 278 EEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASKFHLEVFQEAELLV 337
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVPEH +L EK+ LL RY
Sbjct: 338 NIKEHVLVPEHQILNDTEKKTLLERY 363
>gi|224119828|ref|XP_002331171.1| predicted protein [Populus trichocarpa]
gi|222873254|gb|EEF10385.1| predicted protein [Populus trichocarpa]
Length = 206
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 99/146 (67%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DRGY V E+ T +QF+ ++G+ R +L++ +D +DQ++VFFP
Sbjct: 19 MQMLKDRGYFVGDFEIKMTREQFESKYGNNMK-----REDLVINKTKRNDSSDQIYVFFP 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+E K+G+KT+KTY RM+ E + RAI+VVQ +TP A+ + +++ K+ LE F E+ELL+
Sbjct: 74 EEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQEAELLV 133
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVPEH VL+ EEK+ LL RY
Sbjct: 134 NIKEHVLVPEHQVLSNEEKKTLLERY 159
>gi|388506474|gb|AFK41303.1| unknown [Medicago truncatula]
Length = 206
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 97/146 (66%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DR YLV EL+ + FK+++G+ R +L++ D P+DQ++VFFP
Sbjct: 19 MQMLKDRNYLVGDFELNMSKHDFKDKYGENMK-----REDLVINKTKKDKPSDQIYVFFP 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+E K+G+KT+KTY RM E ++RAI+V QT +TP AK + ++A K+ LE F E+ELL+
Sbjct: 74 EEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASKFHLEVFQEAELLV 133
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVPEH +L EK+ LL RY
Sbjct: 134 NIKEHVLVPEHQILNDTEKKTLLERY 159
>gi|294950415|ref|XP_002786618.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239900910|gb|EER18414.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 213
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 104/146 (71%), Gaps = 2/146 (1%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRGY+V Q L++T + F +Q+ + E++ R +LI+LV+ DDP+DQ+ VFFPD
Sbjct: 22 ELLQDRGYVVAQKYLNETKESFAQQWNE-IQERKGGRHDLIILVSKQDDPSDQLIVFFPD 80
Query: 62 EPK-IGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
E K +G+K I+T +M+E+ + RAI+VVQ +T AK ++ + +P+ +E F ESEL++
Sbjct: 81 ENKRVGVKPIRTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVV 140
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT HELVPEH LTPEEK+ LL RY
Sbjct: 141 NITHHELVPEHKPLTPEEKRLLLERY 166
>gi|297738790|emb|CBI28035.3| unnamed protein product [Vitis vinifera]
Length = 186
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 96/144 (66%), Gaps = 5/144 (3%)
Query: 3 LCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDE 62
+ DRGY V E++ T QF +FG+ R +L++ A D +DQ++VFFP+E
Sbjct: 1 MLKDRGYFVGDFEINMTKHQFVSKFGENMK-----REDLVINKAKRTDSSDQIYVFFPEE 55
Query: 63 PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINI 122
K+G+KT+KTY RM+ E + RAI+VVQ +TP A+ + +++ K+ LE F E+ELL+NI
Sbjct: 56 QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNI 115
Query: 123 TEHELVPEHIVLTPEEKQELLTRY 146
EH LVPEH VLT EEK+ LL RY
Sbjct: 116 KEHVLVPEHQVLTSEEKKTLLERY 139
>gi|294944697|ref|XP_002784385.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239897419|gb|EER16181.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 213
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 103/146 (70%), Gaps = 2/146 (1%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRGYLV Q L++T + F +Q+ + E++ R +LI+LV+ DDP+DQ+ VFFPD
Sbjct: 22 ELLQDRGYLVAQKYLNETKESFAQQWNE-IQERKGGRHDLIILVSKQDDPSDQLIVFFPD 80
Query: 62 EPK-IGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
E K +G+K I+T +M+E+ + RAI+VVQ +T AK ++ + +P+ +E F ESEL++
Sbjct: 81 ENKRVGVKPIRTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVV 140
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT HELVPEH LT EEK+ LL RY
Sbjct: 141 NITHHELVPEHKPLTAEEKRLLLERY 166
>gi|219112619|ref|XP_002178061.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410946|gb|EEC50875.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 228
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 99/145 (68%), Gaps = 5/145 (3%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+ RGY+V + + T FKE+FG+ PS R L +LV DD T+Q+F+FFP+
Sbjct: 42 NMLDKRGYMVPKTLREITPSAFKERFGEYPS-----RENLTILVEKADDDTNQLFIFFPE 96
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
+ K+G+K IK Y RM+ E++ AII+++ +TP AKQ++ +M+ + +E+F ESELL++
Sbjct: 97 DEKVGVKPIKVYTDRMRAESVSNAIIILRVDITPFAKQAVQEMSDSFRIEHFKESELLVD 156
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT+H+LVP H VLTP EK ELL RY
Sbjct: 157 ITKHQLVPVHQVLTPNEKNELLKRY 181
>gi|224001668|ref|XP_002290506.1| RPB5,-like protein to RNA polymerase i [Thalassiosira pseudonana
CCMP1335]
gi|220973928|gb|EED92258.1| RPB5,-like protein to RNA polymerase i [Thalassiosira pseudonana
CCMP1335]
Length = 226
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 101/144 (70%), Gaps = 5/144 (3%)
Query: 3 LCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDE 62
+ RGY+V+++ + T F ++FG+ PS R L +LV DD T+Q+FVFFP++
Sbjct: 41 MLSKRGYMVSREMREMTPFDFTQRFGEYPS-----REGLTILVEKADDETNQLFVFFPED 95
Query: 63 PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINI 122
K+G+K IK RM++E + AI+V++ +TP AKQ++++M+ + LE+F E+ELL++I
Sbjct: 96 EKVGVKPIKILTDRMKDENVSNAILVLRGDITPFAKQAVLEMSDSFRLEHFKEAELLVDI 155
Query: 123 TEHELVPEHIVLTPEEKQELLTRY 146
TEH LVPEH+VL+ EKQELL RY
Sbjct: 156 TEHTLVPEHLVLSQNEKQELLKRY 179
>gi|449450868|ref|XP_004143184.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449524595|ref|XP_004169307.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 207
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 97/147 (65%), Gaps = 6/147 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ DRGY V ELD + QFK +FG+ R +L++ + ++ +DQ++VFFP
Sbjct: 19 LQMLKDRGYFVGDFELDMSKVQFKNKFGENMK-----REDLVINKSKRNNSSDQIYVFFP 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM-APKYILEYFLESELL 119
+EPK+GIK ++TY RM+ E + RAI VVQ +TP A+ + ++ + K LE F E+ELL
Sbjct: 74 EEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSSKLHLEVFQETELL 133
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NI EH L+PEH LT EEK+ LL RY
Sbjct: 134 VNIKEHVLIPEHQTLTDEEKKTLLGRY 160
>gi|413952168|gb|AFW84817.1| hypothetical protein ZEAMMB73_052663 [Zea mays]
Length = 238
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 100/163 (61%), Gaps = 5/163 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DRGYLV EL + F +FG+ R +L++ +DP+DQ++VFFP
Sbjct: 23 MQMLRDRGYLVVDHELATSRRDFLRKFGESFH-----REDLLINKYKKNDPSDQIYVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ K+G+K IK Y + M E + RA++V+Q +TP AK L+++ PK LE F E+E+LI
Sbjct: 78 NDDKVGMKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRYWRSCVTIFWTQKRTGEE 163
NI EH LVPEH VLT EEK+ LL RY + + R G E
Sbjct: 138 NIKEHVLVPEHQVLTNEEKKTLLERYTLKETQVLRPEARPGRE 180
>gi|302683883|ref|XP_003031622.1| hypothetical protein SCHCODRAFT_55942 [Schizophyllum commune H4-8]
gi|300105315|gb|EFI96719.1| hypothetical protein SCHCODRAFT_55942 [Schizophyllum commune H4-8]
Length = 210
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 96/146 (65%), Gaps = 4/146 (2%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPA-RSELIVLVAHNDDPTDQMFVFFP 60
+L DRG+ V E++ +LD FK Q+ S+ R R++L H DD TDQ+FVFF
Sbjct: 21 ELVKDRGFQVADYEINLSLDDFKSQYA---SQSRSVDRNQLNFFTNHRDDTTDQIFVFFS 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DE +G+KT++ ++E+ I R II+ MTP+A++ +V M +Y LE F E++LL+
Sbjct: 78 DERSVGVKTMRKLLGILEEKGIRRGIIIFPGNMTPAARKVIVAMQSQYRLEEFSEADLLV 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT H LVP+HIVL PEEK+ELL RY
Sbjct: 138 NITHHTLVPQHIVLKPEEKRELLERY 163
>gi|226530454|ref|NP_001141164.1| uncharacterized protein LOC100273250 [Zea mays]
gi|226533456|ref|NP_001152590.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Zea mays]
gi|194703030|gb|ACF85599.1| unknown [Zea mays]
gi|195657875|gb|ACG48405.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Zea mays]
gi|413952167|gb|AFW84816.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 210
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 95/146 (65%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DRGYLV EL + F +FG+ R +L++ +DP+DQ++VFFP
Sbjct: 23 MQMLRDRGYLVVDHELATSRRDFLRKFGESFH-----REDLLINKYKKNDPSDQIYVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ K+G+K IK Y + M E + RA++V+Q +TP AK L+++ PK LE F E+E+LI
Sbjct: 78 NDDKVGMKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVPEH VLT EEK+ LL RY
Sbjct: 138 NIKEHVLVPEHQVLTNEEKKTLLERY 163
>gi|384497437|gb|EIE87928.1| hypothetical protein RO3G_12639 [Rhizopus delemar RA 99-880]
Length = 188
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 92/144 (63%), Gaps = 3/144 (2%)
Query: 3 LCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDE 62
+ HDRGYLV+Q ELD L+ FK F PS R +L +V DDPTDQ+ VFFP +
Sbjct: 1 MVHDRGYLVSQSELDMDLESFKRTFA--PSGD-VDRDQLTFVVQKKDDPTDQLLVFFPKD 57
Query: 63 PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINI 122
P +G+K ++ Y +RM ++ I + I + Q MT SA + + + K+ LE F E+ELL+NI
Sbjct: 58 PSVGVKPLRVYVERMAQQQIPKGICIYQKSMTSSANKVIQQLPSKHTLESFQENELLVNI 117
Query: 123 TEHELVPEHIVLTPEEKQELLTRY 146
T H LVP+H VLT EEK LL RY
Sbjct: 118 THHVLVPKHEVLTAEEKSTLLQRY 141
>gi|255546411|ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223546721|gb|EEF48219.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 225
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 98/165 (59%), Gaps = 24/165 (14%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDD---------- 50
MQ+ DR YLVT E++ T QF ++GD R +L++ + D
Sbjct: 19 MQMLKDRTYLVTDSEINITKHQFTSKYGDNMK-----REDLVIHKSKRDGSDSFYPTKLL 73
Query: 51 ---------PTDQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSL 101
P Q++VFFP+E K+G+KT+KTY RM+ E + RAI+VVQ +TP A+ +
Sbjct: 74 FLNQLEAWLPLYQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQSLTPFARTCI 133
Query: 102 VDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
++A K+ LE F ESELL+NI EH LVPEH VLT EEK+ LL RY
Sbjct: 134 AEIASKFHLEVFQESELLVNIKEHVLVPEHQVLTNEEKKTLLERY 178
>gi|357482711|ref|XP_003611642.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355512977|gb|AES94600.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 331
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 98/146 (67%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M++ DR YLV E++ + ++FKE++G+ + R +L++ A D+P+DQ++VFFP
Sbjct: 144 MEMLRDRNYLVGDFEVNMSKEEFKEKYGEHMN-----REDLVINKAKKDNPSDQIYVFFP 198
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ K+G+ T +TY +RM E ++RAIIV QT +T A S+ K+ LE F E+ELL+
Sbjct: 199 EDEKVGVHTFRTYTKRMNSENVYRAIIVCQTSLTNMAWNSISQFDSKFHLEVFQEAELLV 258
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
N+ H+LVPEH +LT EK+ +L RY
Sbjct: 259 NVRYHKLVPEHQLLTDNEKKTVLERY 284
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 70/113 (61%), Gaps = 6/113 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M++ DR YLV E+ + +FKE +G+ R +L++ A D+P+DQ++VFFP
Sbjct: 19 MEMLRDRNYLVGDFEVCMSKQEFKETYGENLK-----REDLVIKKAKKDNPSDQIYVFFP 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYF 113
+ K+ + T++TY RM + ++RAI+V QT +T +A+ ++A K+ LE F
Sbjct: 74 ENDKVDVHTLRTYTNRMSSDNVYRAIVVCQTSLTKAAR-DFSEIASKFHLEVF 125
>gi|449462431|ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 207
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 97/146 (66%), Gaps = 6/146 (4%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
Q+ DRGY V E+D T +QFK+++G+ R ++++ + +D +DQ++VFFP+
Sbjct: 20 QMLRDRGYFVGDFEIDMTREQFKQKYGENMK-----REDIVINKSKRNDSSDQIYVFFPE 74
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPK-YILEYFLESELLI 120
E K+GIK +KTY RM+ E + RAI+VVQ +TP A+ + + K + LE F E+ELL+
Sbjct: 75 EAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSKSFHLEVFQEAELLV 134
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI +H LVPEH +L EEK+ LL RY
Sbjct: 135 NIKDHVLVPEHQLLNNEEKKTLLERY 160
>gi|346470667|gb|AEO35178.1| hypothetical protein [Amblyomma maculatum]
Length = 205
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 96/146 (65%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M++ DR YLV EL+ T F +FG+ R +L + DP+DQ++VFFP
Sbjct: 18 MEMLRDRNYLVVDYELNMTKLDFLHKFGEGVK-----RDDLTINKYKKGDPSDQIYVFFP 72
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ K+G+K IK + M+ E + R+I+VVQ +TP AK L+++ PK+ILE FLE+ELL+
Sbjct: 73 NDDKVGMKHIKKCVELMKTENVTRSILVVQQNLTPFAKAHLLELTPKFILEVFLEAELLV 132
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI +H L+PEH VLT EEK+ LL RY
Sbjct: 133 NIKKHVLIPEHQVLTNEEKKTLLERY 158
>gi|357125497|ref|XP_003564430.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 210
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 94/146 (64%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M + DRGYLV + EL T F+ ++G+ R +L++ +DP DQ++VFFP
Sbjct: 23 MHMLRDRGYLVVEHELAMTRRDFERKYGESFH-----REDLLINKCKKNDPNDQIYVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ K+G+K IK Y + M E + RA++VVQ +TP AK L ++ PK LE F ++E+LI
Sbjct: 78 NDEKVGMKHIKKYVEMMNAEKVSRAVVVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVPEH VLT +EK+ LL RY
Sbjct: 138 NIKEHVLVPEHQVLTNDEKKTLLERY 163
>gi|326492457|dbj|BAK02012.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326504136|dbj|BAK02854.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511589|dbj|BAJ91939.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 93/146 (63%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M + DRGYLV + EL T F+ ++G+ R ++++ +DP DQ++VFFP
Sbjct: 23 MHMLRDRGYLVVEHELSMTRRDFQRKYGETFH-----REDMLINKCKKNDPNDQIYVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ K+G+K IK Y + M E + RAI+VVQ +TP AK L ++ PK LE F ++E+LI
Sbjct: 78 NDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVPEH VL EEK+ LL RY
Sbjct: 138 NIKEHVLVPEHQVLANEEKKTLLARY 163
>gi|452822190|gb|EME29212.1| DNA-directed RNA polymerase II subunit E [Galdieria sulphuraria]
Length = 212
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 99/146 (67%), Gaps = 2/146 (1%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY+V + D L+ +E+FG + + +R L +L H DP+DQ++VFFP
Sbjct: 22 LEMLRDRGYVVLETSSD--LEMTREEFGSRLQQANYSRESLTLLKQHQHDPSDQIYVFFP 79
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
E ++ +KT++ Y RM +E +++AI+VV ++P AKQ + +A ++ +E FLE ELL+
Sbjct: 80 AEERVSVKTLRDYFVRMDQERVYKAILVVIKSLSPFAKQGIQKVASQFKVEVFLEMELLV 139
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT HELVP+H VL+ E K++LL RY
Sbjct: 140 NITHHELVPKHEVLSTEGKKQLLKRY 165
>gi|326503328|dbj|BAJ99289.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 207
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 100/147 (68%), Gaps = 6/147 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DRGYLV ++D T+ +F ++GD R +L++ A D+P +Q+++FFP
Sbjct: 19 MQMLRDRGYLVVDADVDLTMGEFVGRYGDPVR-----RDDLVINRAKKDNPDEQIYIFFP 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMA-PKYILEYFLESELL 119
+EPK G+KT+K+Y ++M++E ++ I+VVQ +T ++ L+ ++ K LE F E ELL
Sbjct: 74 NEPKPGVKTVKSYAEKMKQENVYNGILVVQQALTAFSRNLLLGLSQEKLQLEVFQEGELL 133
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
INI H+LVPEH++LT E+K+ LL +Y
Sbjct: 134 INIKNHDLVPEHVLLTKEQKKTLLEKY 160
>gi|357482707|ref|XP_003611640.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355512975|gb|AES94598.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 229
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 114/187 (60%), Gaps = 17/187 (9%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M++ DR YLV E++ + ++FKE++G+ + R +L++ A D+P+DQ++VFFP
Sbjct: 19 MEMLRDRNYLVGDFEVNMSKEEFKEKYGEHMN-----REDLVINKAKKDNPSDQIYVFFP 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ K+G+ T +T +RM E ++RAIIV QT +T A L ++ K+ LE F E+ELL+
Sbjct: 74 EDEKVGVHTFRTCTKRMNSENVYRAIIVCQTSLTNMA---LSEIDSKFHLEVFQEAELLV 130
Query: 121 NITEHELVPEHIVLTPEEKQELLTRYWRSCVTIFWTQKRTGEEHFLKECSFESATVKSVY 180
N+ HELVPEH VLT EK+ LL RY T+ TQ + F C F S V S
Sbjct: 131 NVRYHELVPEHQVLTDNEKKTLLERY-----TVKETQNEVSMKDF---CLFPSLLVIS-N 181
Query: 181 PSLKAPI 187
PS +P+
Sbjct: 182 PSTLSPL 188
>gi|384497180|gb|EIE87671.1| hypothetical protein RO3G_12382 [Rhizopus delemar RA 99-880]
Length = 140
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 91/143 (63%), Gaps = 3/143 (2%)
Query: 3 LCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDE 62
+ HDRGYLV+Q ELD L+ FK F PS R +L +V DDPTDQ+ VFFP +
Sbjct: 1 MVHDRGYLVSQSELDMDLESFKRTFA--PSGD-VDRDQLTFVVQKKDDPTDQLLVFFPKD 57
Query: 63 PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINI 122
P +G+K ++ Y +RM ++ I + I + Q MT SA + + + K+ LE F E+ELL+NI
Sbjct: 58 PSVGVKPLRVYVERMAQQQIPKGICIYQKSMTSSANKVIQQLPSKHTLESFQENELLVNI 117
Query: 123 TEHELVPEHIVLTPEEKQELLTR 145
T H LVP+H VLT EEK LL R
Sbjct: 118 THHVLVPKHEVLTAEEKSTLLQR 140
>gi|449455411|ref|XP_004145446.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449487698|ref|XP_004157756.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 205
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 101/146 (69%), Gaps = 6/146 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ DRG++V EL + +QFK Q+G+ + +L++ + ++ +DQ++VFFP
Sbjct: 19 LQMLRDRGFVVGDFELAMSREQFKNQYGETMK-----KEDLVINKSMRNNSSDQIYVFFP 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+ +KT++TY RM+ + + RAI+VVQ ++ A+ S+ + APK+ LE F E+ELL+
Sbjct: 74 EEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICE-APKFHLEVFQEAELLV 132
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI +H L+PEH +LT E+K+ LL RY
Sbjct: 133 NIKDHVLIPEHQLLTNEDKKTLLERY 158
>gi|115440569|ref|NP_001044564.1| Os01g0805800 [Oryza sativa Japonica Group]
gi|55296830|dbj|BAD68174.1| putative DNA-directed RNA polymerase II 23K chain [Oryza sativa
Japonica Group]
gi|113534095|dbj|BAF06478.1| Os01g0805800 [Oryza sativa Japonica Group]
gi|215737136|dbj|BAG96065.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765546|dbj|BAG87243.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189238|gb|EEC71665.1| hypothetical protein OsI_04128 [Oryza sativa Indica Group]
Length = 210
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 94/146 (64%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DRGYLV + EL F ++G+ R +L++ +DP+DQ++VFFP
Sbjct: 23 MQMLRDRGYLVVEHELAMGRRDFLRKYGESFH-----REDLLINKYKKNDPSDQIYVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ K+G+K IK Y + M+ E + RA++V+Q +TP A+ L ++ PK LE F E+ELLI
Sbjct: 78 NDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEAELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVPEH VL EEK+ LL RY
Sbjct: 138 NIKEHVLVPEHQVLNNEEKKTLLERY 163
>gi|237834761|ref|XP_002366678.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Toxoplasma gondii ME49]
gi|211964342|gb|EEA99537.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Toxoplasma gondii ME49]
gi|221486036|gb|EEE24306.1| DNA-directed RNA polymerase II 23 kDa, putative [Toxoplasma gondii
GT1]
gi|221503532|gb|EEE29223.1| DNA-directed RNA polymerase II 23 kDa, putative [Toxoplasma gondii
VEG]
Length = 205
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 98/145 (67%), Gaps = 5/145 (3%)
Query: 3 LCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDE 62
+ DRGY+V+ E +++ + F ++F E RS ++++ +H DP +++ V+F DE
Sbjct: 18 MLQDRGYIVSAQEKNESWNDFLQRF----KENECNRSRMLLIASHKVDPDNRVIVYFADE 73
Query: 63 -PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
K G+K I+ +RM+E I RAI+V Q +T A+ ++ + AP++I+E F+ESELL+N
Sbjct: 74 TKKTGVKPIRELTERMEERNIQRAILVTQNVLTAFARDAISEAAPRHIIENFMESELLVN 133
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT+HELVP+H+ LT +EKQ LL RY
Sbjct: 134 ITKHELVPKHVPLTNDEKQNLLNRY 158
>gi|298712690|emb|CBJ48715.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 212
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 102/148 (68%), Gaps = 7/148 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M++ RGY V Q+ + T + F +Q+G +P+ R +L +LV DDP DQ+FVFFP
Sbjct: 23 MKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPN-----RHDLTLLVEKVDDPMDQIFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPK--YILEYFLESEL 118
D+ K+G+K I++Y ++M EE + RAIIV++ G+TP A+ ++ ++ + +E F ++EL
Sbjct: 78 DDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAEL 137
Query: 119 LINITEHELVPEHIVLTPEEKQELLTRY 146
+++ITEH LVPEH VL+ E+K ELL RY
Sbjct: 138 MLDITEHTLVPEHQVLSSEQKAELLKRY 165
>gi|340377817|ref|XP_003387425.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Amphimedon queenslandica]
Length = 143
Score = 128 bits (321), Expect = 8e-27, Method: Composition-based stats.
Identities = 61/74 (82%), Positives = 67/74 (90%)
Query: 73 YCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELVPEHI 132
YC RMQEE I RAIIVVQ GMTPSAKQ+LVDMAPKYILE F+E+EL+INITEHELVPEHI
Sbjct: 23 YCGRMQEENISRAIIVVQQGMTPSAKQALVDMAPKYILEQFMEAELMINITEHELVPEHI 82
Query: 133 VLTPEEKQELLTRY 146
V+T EEK+ELL RY
Sbjct: 83 VMTTEEKRELLARY 96
>gi|326501686|dbj|BAK02632.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 207
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 97/147 (65%), Gaps = 6/147 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DRGYLV ++D T+ +F ++GD R +L++ A D+P +Q++VFFP
Sbjct: 19 MQMLRDRGYLVVDADVDMTMGEFVGRYGDPVR-----RDDLVINRAKKDNPDEQIYVFFP 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAP-KYILEYFLESELL 119
+EPK G K +K+Y ++M +E + I+VVQ +T A+ +L+ +P K ++ F E ELL
Sbjct: 74 NEPKPGQKAVKSYVEKMTQENVRNGILVVQQALTSFARNNLLGNSPDKLQVQVFQEKELL 133
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
INI H+LVPEH++LT E+K+ LL +Y
Sbjct: 134 INIKNHDLVPEHVLLTKEQKKTLLEKY 160
>gi|148910132|gb|ABR18148.1| unknown [Picea sitchensis]
Length = 194
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 97/146 (66%), Gaps = 16/146 (10%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ +DR YLV E++ T +QF ++FG+ P + +L++ A + P++Q+FVFFP
Sbjct: 18 LQMLNDRDYLVGDFEINTTKEQFLDKFGEDPK-----KEDLVINKAKRNSPSEQIFVFFP 72
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+E K+G+K+IKTY +RM+ E + RAI+VVQ + + K+ LE F E+ELL+
Sbjct: 73 EEAKVGVKSIKTYVERMKSEGVFRAILVVQQ-----------EFSGKFHLEVFQEAELLV 121
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVPE +LTPEEK+ LL RY
Sbjct: 122 NIKEHVLVPEQQILTPEEKKTLLERY 147
>gi|393221284|gb|EJD06769.1| RPB5 subunit of DNA-directed RNA polymerase [Fomitiporia
mediterranea MF3/22]
Length = 212
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 96/145 (66%), Gaps = 2/145 (1%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRG+ V+ +E++ L FK+QF + S R++L H DP+D +F++F D
Sbjct: 23 ELIKDRGFQVSDEEIEVDLVTFKQQFAN--SSGSVDRNQLNFFATHESDPSDHIFIYFSD 80
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
+ +GIKT++ C ++E++I++ I++ MTPSA++ +V M+ +Y LE F ES+LL+N
Sbjct: 81 QKSVGIKTMQKVCIILEEKSINKGIVIFPGTMTPSARKFIVQMSVRYRLEEFSESDLLVN 140
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H LVP H VLTPEEK LL +Y
Sbjct: 141 ITRHILVPHHEVLTPEEKDTLLEKY 165
>gi|340386044|ref|XP_003391518.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like, partial [Amphimedon queenslandica]
Length = 88
Score = 127 bits (318), Expect = 2e-26, Method: Composition-based stats.
Identities = 55/71 (77%), Positives = 67/71 (94%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+CHDR YLVTQDELDQTLDQFKEQFG++P++ P+R++L +LVAHNDDPTDQMFVFFP
Sbjct: 18 MQMCHDRRYLVTQDELDQTLDQFKEQFGERPNDGHPSRNDLSILVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIK 71
++PK+GIKTIK
Sbjct: 78 EDPKVGIKTIK 88
>gi|389584405|dbj|GAB67137.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Plasmodium
cynomolgi strain B]
Length = 205
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 98/146 (67%), Gaps = 5/146 (3%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY++T E + FKEQF E RS + ++ +H +D +++ V+F D
Sbjct: 17 EMLEDRGYIITPREKLENFATFKEQF----EENEKLRSRMTIITSHKNDANNKIIVYFAD 72
Query: 62 E-PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
E K G+K ++ ++M E++I RAI+V Q +TP A+ ++ + AP++I+E FL++ELL+
Sbjct: 73 EIKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHIIENFLDTELLV 132
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+HELVP+HI LT +EK+ LL RY
Sbjct: 133 NITKHELVPKHIPLTSDEKRNLLQRY 158
>gi|328770744|gb|EGF80785.1| hypothetical protein BATDEDRAFT_88106 [Batrachochytrium
dendrobatidis JAM81]
Length = 207
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 92/145 (63%), Gaps = 3/145 (2%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ RGYLV++ EL+ +LD F+ + R L LV H+ DQ+ VFF D
Sbjct: 19 EMVSHRGYLVSKAELEMSLDDFRYTYTKGGIIDRQG---LTFLVQHSSSENDQLLVFFTD 75
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
+ +GIK IK C+RM ++I + I++ + +TPSA + + +MAPKY LE F ESELL+N
Sbjct: 76 DDSVGIKPIKKICERMISQSIMKGILIYKKSLTPSANKVVQEMAPKYQLELFQESELLVN 135
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT+H LVP H VLT +EK+ LL RY
Sbjct: 136 ITQHTLVPVHEVLTVDEKKTLLARY 160
>gi|222619416|gb|EEE55548.1| hypothetical protein OsJ_03801 [Oryza sativa Japonica Group]
Length = 210
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 93/146 (63%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DRGYLV + EL F ++G+ R +L++ +DP+DQ++VFFP
Sbjct: 23 MQMLRDRGYLVVEHELAMGRRDFLRKYGESFH-----REDLLINKYKKNDPSDQIYVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ K+G+K IK Y + M+ E + RA++V+Q +TP A+ L ++ PK LE F E+ELLI
Sbjct: 78 NDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEAELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVPEH VL EK+ LL RY
Sbjct: 138 NIKEHVLVPEHQVLNNGEKKTLLERY 163
>gi|156101473|ref|XP_001616430.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Plasmodium vivax
Sal-1]
gi|148805304|gb|EDL46703.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Plasmodium vivax]
Length = 205
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 97/146 (66%), Gaps = 5/146 (3%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY++T E + FKEQF E RS + ++ +H +D +++ V+F D
Sbjct: 17 EMLEDRGYIITPREKLENFATFKEQF----EENEKLRSRMTIITSHKNDANNKIIVYFAD 72
Query: 62 E-PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
E K G+K ++ ++M E++I RAI+V Q +TP A+ ++ + AP++I+E FL++ELL+
Sbjct: 73 EIKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHIIENFLDTELLV 132
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+HELVP HI LT +EK+ LL RY
Sbjct: 133 NITKHELVPRHIPLTSDEKRNLLQRY 158
>gi|449502080|ref|XP_004161536.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 208
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 97/147 (65%), Gaps = 7/147 (4%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFV-FFP 60
Q+ DRGY V E+D T +QFK+++G+ R ++++ + +D +DQ+++ FFP
Sbjct: 20 QMLRDRGYFVGDFEIDMTREQFKQKYGENMK-----REDIVINKSKRNDSSDQVYICFFP 74
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPK-YILEYFLESELL 119
+E K+GIK +KTY RM+ E + RAI+VVQ +TP A+ + + K + LE F E+ELL
Sbjct: 75 EEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSKSFHLEVFQEAELL 134
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NI +H LVPEH +L EEK+ LL RY
Sbjct: 135 VNIKDHVLVPEHQLLNNEEKKTLLERY 161
>gi|38344231|emb|CAD41325.2| OJ991113_30.8 [Oryza sativa Japonica Group]
Length = 205
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 98/147 (66%), Gaps = 7/147 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHN-DDPTDQMFVFF 59
MQ+ DRGYLVT+ ++D F +FGD P + +V H D+ DQ++VFF
Sbjct: 18 MQMLRDRGYLVTELDIDLPRGDFVARFGD------PVDRDHLVFSRHKKDNGADQIYVFF 71
Query: 60 PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
P + K G+KTI++Y +RM++E++ I+VVQ ++ A+ ++ +++ K+ LE F E+ELL
Sbjct: 72 PKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHLEVFQEAELL 131
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NI +H LVPEH +LTPE+K+ LL RY
Sbjct: 132 VNIKDHTLVPEHELLTPEQKKTLLERY 158
>gi|182676597|sp|Q54EH2.2|RPAB1_DICDI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
rpabc1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
Length = 197
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 91/148 (61%), Gaps = 14/148 (9%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ DR Y++T E + P E +R L + DDPTD ++VFFP
Sbjct: 15 LQMLSDREYIITAYE------------QEYPRESFVSRENLTMYCVKKDDPTDSIYVFFP 62
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMA--PKYILEYFLESEL 118
D PK+G+ IK Y M++ +RAIIVVQ +TP AKQ+L + + K LE F E+EL
Sbjct: 63 DTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAEL 122
Query: 119 LINITEHELVPEHIVLTPEEKQELLTRY 146
L+NIT H+LVP+HI+LT EEK ELLTRY
Sbjct: 123 LVNITHHQLVPKHILLTKEEKLELLTRY 150
>gi|221057466|ref|XP_002261241.1| DNA-directed RNA polymerase 2 [Plasmodium knowlesi strain H]
gi|194247246|emb|CAQ40646.1| DNA-directed RNA polymerase 2, putative [Plasmodium knowlesi strain
H]
Length = 205
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 98/146 (67%), Gaps = 5/146 (3%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY++T E + FKEQF E RS + ++ +H +D ++++ V+F D
Sbjct: 17 EMLEDRGYVITPREKLENFATFKEQF----EENEKLRSRMTIITSHKNDESNKIIVYFAD 72
Query: 62 E-PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
E K G+K ++ ++M E++I RAI+V Q +TP A+ ++ + AP++I+E FL++ELL+
Sbjct: 73 ETKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHIIENFLDTELLV 132
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+HELVP HI LT +EK+ LL RY
Sbjct: 133 NITKHELVPRHIPLTSDEKRNLLQRY 158
>gi|320168277|gb|EFW45176.1| DNA-directed RNA polymerase 2 [Capsaspora owczarzaki ATCC 30864]
Length = 211
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 94/146 (64%), Gaps = 1/146 (0%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+CHDR Y+VT DEL+Q L+ F+ + ++ P R ++ A+ DDPT + V F
Sbjct: 20 MQMCHDRHYIVTADELEQNLETFRAKVC-TGNDLTPVRERMLCNFAYKDDPTKSILVMFA 78
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
E K+G+ I+ ++M ++I R IIVVQ +T A+ +L + P++I+E F E+ELL+
Sbjct: 79 TEVKVGVAPIRQMIEQMSTQSIQRGIIVVQDCLTSFARSTLAEAMPQFIIEEFKEAELLV 138
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT H LVP+H VL+ ++K LL +Y
Sbjct: 139 NITRHTLVPKHEVLSDDDKIALLKQY 164
>gi|209878710|ref|XP_002140796.1| DNA-directed RNA polymerase 2 [Cryptosporidium muris RN66]
gi|209556402|gb|EEA06447.1| DNA-directed RNA polymerase 2, putative [Cryptosporidium muris
RN66]
Length = 205
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 97/146 (66%), Gaps = 5/146 (3%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY+V+ + D+ FKE+F S +R RS ++++ +H D T ++ +F D
Sbjct: 17 EMLEDRGYIVSSQDKDEQFATFKERF---ESHQR-LRSRMLMVASHKQDQTKRIICYFAD 72
Query: 62 E-PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
E K G+K I+ ++M E I RAI++ Q +T AK +++D APK+ +E FLE+ELL+
Sbjct: 73 ESKKTGVKPIRDIVEKMDEHNIQRAILISQNVLTAHAKVAILDAAPKHYIESFLENELLV 132
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT HELVP+H++L+ EEK +LL RY
Sbjct: 133 NITRHELVPKHVLLSDEEKSQLLERY 158
>gi|392564185|gb|EIW57363.1| DNA-directed RNA polymerase RPB5 subunit [Trametes versicolor
FP-101664 SS1]
Length = 209
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRG+ V+ DE++ L F++ + ++ RS+L H D+P+ Q+F+FF D
Sbjct: 20 ELVKDRGFQVSDDEINMDLSTFRDHYANQSGS--VDRSQLNFFTNHRDNPSVQIFIFFTD 77
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E +G+KT++ ++E+ I + IIV MTPSA++ +V MA Y LE F ES+LL+N
Sbjct: 78 EKSVGVKTMRKLLGILEEKAIQQGIIVFPGNMTPSARKVIVAMASTYKLEEFSESDLLVN 137
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H LVP+H +LTP++K+ELL Y
Sbjct: 138 ITHHTLVPKHELLTPQQKKELLETY 162
>gi|215713497|dbj|BAG94634.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 167
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 98/147 (66%), Gaps = 7/147 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHN-DDPTDQMFVFF 59
MQ+ DRGYLVT+ ++D F +FGD P + +V H D+ DQ++VFF
Sbjct: 18 MQMLRDRGYLVTELDIDLPRGDFVARFGD------PVDRDHLVFSRHKKDNGADQIYVFF 71
Query: 60 PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
P + K G+KTI++Y +RM++E++ I+VVQ ++ A+ ++ +++ K+ LE F E+ELL
Sbjct: 72 PKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHLEVFQEAELL 131
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NI +H LVPEH +LTPE+K+ LL RY
Sbjct: 132 VNIKDHTLVPEHELLTPEQKKTLLERY 158
>gi|125548794|gb|EAY94616.1| hypothetical protein OsI_16393 [Oryza sativa Indica Group]
gi|125590811|gb|EAZ31161.1| hypothetical protein OsJ_15260 [Oryza sativa Japonica Group]
Length = 217
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 98/147 (66%), Gaps = 7/147 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHN-DDPTDQMFVFF 59
MQ+ DRGYLVT+ ++D F +FGD P + +V H D+ DQ++VFF
Sbjct: 18 MQMLRDRGYLVTELDIDLPRGDFVARFGD------PVDRDHLVFSRHKKDNGADQIYVFF 71
Query: 60 PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
P + K G+KTI++Y +RM++E++ I+VVQ ++ A+ ++ +++ K+ LE F E+ELL
Sbjct: 72 PKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHLEVFQEAELL 131
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NI +H LVPEH +LTPE+K+ LL RY
Sbjct: 132 VNIKDHTLVPEHELLTPEQKKTLLERY 158
>gi|307108804|gb|EFN57043.1| hypothetical protein CHLNCDRAFT_48698 [Chlorella variabilis]
Length = 203
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 96/146 (65%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY + +++++ + +F E+F +P + R + +L + DDPT Q FVFF
Sbjct: 11 LEMLRDRGYQIDKEDVEMSGRKFVEKFATEPDPENVRRDAITILASKADDPTHQAFVFFF 70
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++PK+G+K IK RM++E + R+I+V+Q +TP AKQ + +M+ K+ +E F E EL +
Sbjct: 71 EDPKLGVKAIKAVAVRMRDERVPRSILVLQDKLTPFAKQCIQEMSAKFAIEVFAEGELRV 130
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT H +VP+H VL+ +K LL RY
Sbjct: 131 NITRHSMVPQHQVLSRLDKAALLERY 156
>gi|336370755|gb|EGN99095.1| hypothetical protein SERLA73DRAFT_181909 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383518|gb|EGO24667.1| hypothetical protein SERLADRAFT_468322 [Serpula lacrymans var.
lacrymans S7.9]
Length = 206
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 2/145 (1%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRG+ V+ DE+ L F+ + + R++L +PTDQ+FVFF D
Sbjct: 17 ELVKDRGFAVSDDEIHMDLVTFRSHYANNGGS--VDRNQLNFFTNSRTNPTDQIFVFFSD 74
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E +G+KT++ ++E++I R IIV MTPSA++ + MA +Y LE F ES+LL+N
Sbjct: 75 EKSVGVKTMRKLLGILEEKSIQRGIIVFPGNMTPSARKVIAAMAAQYRLEEFSESDLLVN 134
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H LVP+H VLTPEEK+ LL +Y
Sbjct: 135 ITHHTLVPKHEVLTPEEKKTLLEKY 159
>gi|409078308|gb|EKM78671.1| hypothetical protein AGABI1DRAFT_114282, partial [Agaricus bisporus
var. burnettii JB137-S8]
gi|426199299|gb|EKV49224.1| hypothetical protein AGABI2DRAFT_191302, partial [Agaricus bisporus
var. bisporus H97]
Length = 208
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 93/145 (64%), Gaps = 2/145 (1%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRG+LV+ +E+ L F++Q+ + R++L +PTDQ+FV+F D
Sbjct: 19 ELVRDRGFLVSDEEIHMDLQHFRDQYANNSG--MVDRNQLNFYTTSRANPTDQIFVYFTD 76
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E +G+KT++ ++E++I R IIV MTPSA++ +V M+ +Y LE F E++LL+N
Sbjct: 77 ERSVGVKTMRKLLSILEEKSIQRGIIVFPGNMTPSARKVIVAMSAQYRLEEFSEADLLVN 136
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
I H LVP H VLTPEEK+ LL +Y
Sbjct: 137 IVHHTLVPRHEVLTPEEKKVLLEKY 161
>gi|357164319|ref|XP_003580017.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 205
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 94/147 (63%), Gaps = 7/147 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSE-LIVLVAHNDDPTDQMFVFF 59
M++ DRGYLV +++ ++ +F +++GD P R E L++ D+P +Q++VFF
Sbjct: 18 MEMLRDRGYLVVDADIELSMREFIDRYGD------PVRREDLVINRVKKDNPNEQIYVFF 71
Query: 60 PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
P E K G+KT++ Y +M++E + IIV + ++ A+ L D + + LE F E ELL
Sbjct: 72 PSEAKPGVKTVRGYADKMKQENVTNGIIVAEQALSAFARNVLQDNSKSFFLEVFQEGELL 131
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NI HELVPEH++LT E+K+ LL +Y
Sbjct: 132 VNIKNHELVPEHVLLTHEQKKTLLEKY 158
>gi|395332226|gb|EJF64605.1| RPB5 subunit of DNA-directed RNA polymerase [Dichomitus squalens
LYAD-421 SS1]
Length = 211
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 2/145 (1%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRG+ V DE++ L F+ + + RS+L H D+P Q+F+FF D
Sbjct: 22 ELVKDRGFQVADDEINMDLATFRSHYASQSGT--VDRSQLNFFTNHRDNPMLQIFIFFTD 79
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E +G+KT++ ++E+ I + IIV MTPSA++ +V MA +Y LE F ES+LL+N
Sbjct: 80 EKSVGVKTMRKLLGILEEKNIQQGIIVFPGNMTPSARKVIVAMASQYKLEEFSESDLLVN 139
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H LVP H +LTPE+K+ELL Y
Sbjct: 140 ITHHTLVPRHELLTPEQKKELLETY 164
>gi|281202322|gb|EFA76527.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 288
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 102/174 (58%), Gaps = 36/174 (20%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ HDRGY++T +LDQ+ D+F+ F +R ++ + +D D++F+FFP
Sbjct: 15 LQMLHDRGYMITPVQLDQSKDEFRRNF--------KSREDMNSIHTKREDAADKIFIFFP 66
Query: 61 DEPKIGIKTIK--------------------------TYCQRMQEETIHRAIIVVQTGMT 94
++PK+G+K IK Y +RM+E RAIIVVQ MT
Sbjct: 67 NDPKVGVKPIKEVISTLIKPTNHLSIYLSTHNQTNTYRYVKRMKEIGGTRAIIVVQQVMT 126
Query: 95 PSAKQSLVDMAP--KYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P AKQ+L + + + +LE F E+ELL+NIT H+LVP+HI+L+ EEK ELL +Y
Sbjct: 127 PFAKQALAEFSQNREIVLENFNEAELLVNITHHQLVPKHILLSKEEKSELLAKY 180
>gi|66802850|ref|XP_635268.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|60463617|gb|EAL61802.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 181
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 89/146 (60%), Gaps = 14/146 (9%)
Query: 3 LCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDE 62
+ DR Y++T E + P E +R L + DDPTD ++VFFPD
Sbjct: 1 MLSDREYIITAYE------------QEYPRESFVSRENLTMYCVKKDDPTDSIYVFFPDT 48
Query: 63 PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMA--PKYILEYFLESELLI 120
PK+G+ IK Y M++ +RAIIVVQ +TP AKQ+L + + K LE F E+ELL+
Sbjct: 49 PKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLV 108
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT H+LVP+HI+LT EEK ELLTRY
Sbjct: 109 NITHHQLVPKHILLTKEEKLELLTRY 134
>gi|328865416|gb|EGG13802.1| RapGAP/RanGAP domain-containing protein [Dictyostelium
fasciculatum]
Length = 1144
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 96/149 (64%), Gaps = 7/149 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ DRGY++T EL+ T + FK+ F + +R L DD D++F FFP
Sbjct: 15 LQMLSDRGYMITNSELELTKEDFKKDF----TAHNNSREHLNSSYNKKDDAADRIFTFFP 70
Query: 61 DEPKIGIKTIKTYCQRMQE-ETIHRAIIVVQTGMTPSAKQSLVDM--APKYILEYFLESE 117
+ K+G+ I+ + +M+ +RAII+VQ+ +T AKQ+L + A K +LE F E+E
Sbjct: 71 ADVKVGVTPIRKFVDQMKGPHGGNRAIIIVQSNLTAFAKQALSEFSQAKKIVLEQFNEAE 130
Query: 118 LLINITEHELVPEHIVLTPEEKQELLTRY 146
LL+NIT H+LVP+HI+LT EEK+ELLTRY
Sbjct: 131 LLVNITHHQLVPKHILLTKEEKKELLTRY 159
>gi|124514006|ref|XP_001350359.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
gi|23615776|emb|CAD52768.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
Length = 205
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 97/146 (66%), Gaps = 5/146 (3%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY++T E + FKE F D + RS++ + H +D +++ V+F D
Sbjct: 17 EMLEDRGYIMTPREKLENFSTFKEMFEDNDRQ----RSKMGISTTHKNDSNNRIIVYFAD 72
Query: 62 E-PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
E K G+K ++ +RM+E++I RAI+V Q +TP A+ ++ + AP++I+E FL++ELL+
Sbjct: 73 EVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHIIENFLDTELLV 132
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+HELVP HI LT +EK+ LL RY
Sbjct: 133 NITKHELVPRHIPLTSDEKKNLLQRY 158
>gi|67624263|ref|XP_668414.1| DNA-directed RNA polymerase 2 [Cryptosporidium hominis TU502]
gi|54659611|gb|EAL38180.1| DNA-directed RNA polymerase 2 [Cryptosporidium hominis]
gi|323509171|dbj|BAJ77478.1| cgd2_980 [Cryptosporidium parvum]
gi|323509997|dbj|BAJ77891.1| cgd2_980 [Cryptosporidium parvum]
Length = 205
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 98/146 (67%), Gaps = 5/146 (3%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY+V+ + ++ FKE+F S +R RS ++++ +H D T ++ +F D
Sbjct: 17 EMLEDRGYIVSSQDKEEDFSTFKERF---ESHQR-LRSRMLMVASHRQDQTKRIICYFAD 72
Query: 62 E-PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
E K G+K I+ ++M E I RAI++ Q +T AK +++D APK+ +E FLE+ELL+
Sbjct: 73 ESKKTGVKPIRDIVEKMDEHAIQRAILISQNVLTAHAKVAILDAAPKHYIESFLENELLV 132
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+HELVP+HI+L+ +EK +LL RY
Sbjct: 133 NITKHELVPKHILLSDDEKLQLLDRY 158
>gi|449543190|gb|EMD34167.1| hypothetical protein CERSUDRAFT_141708, partial [Ceriporiopsis
subvermispora B]
Length = 208
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 89/145 (61%), Gaps = 2/145 (1%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRG+ V+ DE++ L F+ + + RS+L H +P Q+FVFF D
Sbjct: 19 ELVKDRGFQVSDDEINMDLATFRSHYANNSGS--VDRSQLNFFTNHTSNPLVQIFVFFSD 76
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E +G+KT++ ++E+ I + +IV MTPSA++ +V MA +Y LE F ES+LL+N
Sbjct: 77 EKSVGVKTMRKLLGILEEKNIQQGVIVFPGNMTPSARKVIVAMASQYKLEEFSESDLLVN 136
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H LVP H VLT EEK+ELL Y
Sbjct: 137 ITHHTLVPRHEVLTAEEKKELLETY 161
>gi|409048291|gb|EKM57769.1| hypothetical protein PHACADRAFT_251606 [Phanerochaete carnosa
HHB-10118-sp]
Length = 208
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 91/145 (62%), Gaps = 2/145 (1%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRG+ V+ DE+ L F+ + ++ RS+L H ++P +Q+F FF D
Sbjct: 19 ELVRDRGFQVSDDEIHMDLATFRSLYANQMGS--VDRSQLNFFTNHQNNPMEQIFTFFSD 76
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E +G+KT++ ++E+ I R IIV MTPSA++ +V MA +Y LE F E++LL+N
Sbjct: 77 EKSVGVKTMRKILNILEEKNIQRGIIVFPGIMTPSARKVIVAMASQYKLEEFSEADLLVN 136
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H LVP H VLTPE+K+ LL +Y
Sbjct: 137 ITHHTLVPRHDVLTPEQKKNLLEKY 161
>gi|66358302|ref|XP_626329.1| DNA-directed RNA polymerase 2 [Cryptosporidium parvum Iowa II]
gi|46228002|gb|EAK88922.1| putative DNA-directed RNA polymerase 2 [Cryptosporidium parvum Iowa
II]
Length = 214
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 98/146 (67%), Gaps = 5/146 (3%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY+V+ + ++ FKE+F S +R RS ++++ +H D T ++ +F D
Sbjct: 26 EMLEDRGYIVSSQDKEEDFSTFKERF---ESHQR-LRSRMLMVASHRQDQTKRIICYFAD 81
Query: 62 E-PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
E K G+K I+ ++M E I RAI++ Q +T AK +++D APK+ +E FLE+ELL+
Sbjct: 82 ESKKTGVKPIRDIVEKMDEHAIQRAILISQNVLTAHAKVAILDAAPKHYIESFLENELLV 141
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+HELVP+HI+L+ +EK +LL RY
Sbjct: 142 NITKHELVPKHILLSDDEKLQLLDRY 167
>gi|299749820|ref|XP_001836357.2| DNA-directed RNA polymerase I [Coprinopsis cinerea okayama7#130]
gi|298408613|gb|EAU85541.2| DNA-directed RNA polymerase I [Coprinopsis cinerea okayama7#130]
Length = 208
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRG+ V+ +E++ +L++F++ +G+ R++L H +P+DQ+FV+F +
Sbjct: 19 ELVKDRGFSVSDEEINMSLERFRQVYGNNMGV--IDRNQLNFYTHHRLNPSDQIFVYFTE 76
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
EP +G+K ++ M+E+ I R II+ MT SA++ + MA Y LE F E++LL+N
Sbjct: 77 EPNVGVKAMRKLLGIMEEKAIQRGIIIFPATMTSSARKVISAMASTYRLEEFAEADLLVN 136
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H LVP H VL+PEEK+ LL RY
Sbjct: 137 ITHHTLVPRHEVLSPEEKKTLLERY 161
>gi|294880824|ref|XP_002769160.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239872330|gb|EER01878.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 168
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 94/132 (71%), Gaps = 2/132 (1%)
Query: 16 LDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDEPK-IGIKTIKTYC 74
L++T + F +Q+ + E++ R +LI+LV+ DDP+DQ+ VFFPDE K +G+K I+T
Sbjct: 2 LNETKESFAQQWNE-IQERKGGRHDLIILVSKQDDPSDQLIVFFPDENKRVGVKPIRTLA 60
Query: 75 QRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELVPEHIVL 134
+M+E+ + RAI+VVQ +T AK ++ + +P+ +E F ESEL++NIT HELVPEH L
Sbjct: 61 LKMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPL 120
Query: 135 TPEEKQELLTRY 146
T EEK+ LL RY
Sbjct: 121 TAEEKRLLLERY 132
>gi|330803783|ref|XP_003289882.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325080041|gb|EGC33614.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 196
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 93/148 (62%), Gaps = 15/148 (10%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ DRGY+ + + + D R EL + DDPT+ ++VFFP
Sbjct: 15 IQMLSDRGYITSAIDAEVPRDI-------------TNRDELKIYCVKKDDPTESVYVFFP 61
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMA--PKYILEYFLESEL 118
+ PK+G+ IK Y + M+ +RAIIVVQ +TP AKQ+LV+++ K +LE F E+EL
Sbjct: 62 EVPKVGVTHIKKYVELMKSRQTNRAIIVVQQNITPFAKQALVEISQDKKIVLEQFNEAEL 121
Query: 119 LINITEHELVPEHIVLTPEEKQELLTRY 146
L+NIT H+LVP+HI+LT EEK ELLTRY
Sbjct: 122 LVNITHHQLVPKHILLTKEEKLELLTRY 149
>gi|444509531|gb|ELV09326.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Tupaia
chinensis]
Length = 199
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/68 (83%), Positives = 62/68 (91%)
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 113 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 172
Query: 121 NITEHELV 128
NITEHE+V
Sbjct: 173 NITEHEVV 180
>gi|390594286|gb|EIN03698.1| DNA-directed RNA polymerase RPB5 subunit [Punctularia
strigosozonata HHB-11173 SS5]
Length = 208
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 91/145 (62%), Gaps = 2/145 (1%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRG+ V+ DE+ L F++ + + R++L +P DQ+FVFF +
Sbjct: 19 ELVKDRGFQVSDDEIQMDLATFRQAYANNGGS--VDRNQLNFFTNSRANPADQIFVFFSE 76
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E +G+KT++ ++E++I R II+ MTPSA++ +V M+ ++ LE F ES+LL+N
Sbjct: 77 EKSVGVKTMRKLLGILEEKSIQRGIIIFPGNMTPSARKVIVAMSAQFRLEEFSESDLLVN 136
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H LVP H VLTPEEK+ LL +Y
Sbjct: 137 ITHHTLVPRHEVLTPEEKRNLLEKY 161
>gi|344239060|gb|EGV95163.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Cricetulus griseus]
Length = 112
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 63/77 (81%)
Query: 55 MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFL 114
M VFFP+EP + IKTIK YCQ +QEE I R +IVVQ GM PS KQSLVDMAPKY+LE FL
Sbjct: 1 MLVFFPEEPTVDIKTIKVYCQCIQEENITRVLIVVQEGMMPSDKQSLVDMAPKYVLEQFL 60
Query: 115 ESELLINITEHELVPEH 131
+ ELLINITEHELV EH
Sbjct: 61 QQELLINITEHELVLEH 77
>gi|393242192|gb|EJD49711.1| DNA-directed RNA polymerase I [Auricularia delicata TFB-10046 SS5]
Length = 209
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 91/145 (62%), Gaps = 3/145 (2%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY V+++E + +L+QF+ Q + R+ L H DP DQ+FVFF +
Sbjct: 21 EMVRDRGYQVSEEETNMSLEQFRAQHTTNGT---VNRTTLTFFTHHAKDPNDQLFVFFCE 77
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
+ + IKT++ + +Q++ I R IIV MTPSA++ + M+ Y LE F E++L++N
Sbjct: 78 DKNVSIKTMRKFLDVLQQKGIQRGIIVFSGTMTPSARKVITGMSQDYKLEEFAEADLIVN 137
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT+H LVP+H V+T E K+ LL RY
Sbjct: 138 ITQHILVPKHEVMTTEAKKALLERY 162
>gi|392594893|gb|EIW84217.1| RPB5 subunit of DNA-directed RNA polymerase [Coniophora puteana
RWD-64-598 SS2]
Length = 207
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRGY V+ DE+ FK + + R++L ++PT+Q+F++F D
Sbjct: 18 ELVKDRGYQVSDDEIHMDFATFKSHYANNGGS--VDRNQLNFFTNSQENPTEQIFIYFSD 75
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E +GIKT++ ++E++I RAII+ MT +A++ +V MA +Y +E F ES+LL+N
Sbjct: 76 ERSVGIKTMRKLIAILEEKSIQRAIIIFPGAMTGAARKVIVAMASQYRIEEFSESDLLVN 135
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H LVP+H VLTPE+K+ LL +Y
Sbjct: 136 ITHHILVPKHEVLTPEQKKALLEKY 160
>gi|167516220|ref|XP_001742451.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779075|gb|EDQ92689.1| predicted protein [Monosiga brevicollis MX1]
Length = 210
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 91/154 (59%), Gaps = 12/154 (7%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
Q+CHDRG+ VTQ+ ++ T D + E +G+ P R EL V DD D +FVFFP+
Sbjct: 19 QMCHDRGFRVTQEMMNMTFDTWNEIYGEYP------RKELSFPVQKVDDDNDGLFVFFPE 72
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQS---LVDMAPKYILEYFLESEL 118
P + + IK+ R++ + + RAIIV Q + P AK L+ P YI+E F E+EL
Sbjct: 73 SPDVKVAAIKSLYDRLKSDNLRRAIIVYQRKVAPVAKSHIDILLKEDPPYIVETFAEAEL 132
Query: 119 LINITEHELVPEHIVLTPEEKQELLTRYWRSCVT 152
+ N+T H LVP H +L EKQ+LL RY CV+
Sbjct: 133 VYNVTRHHLVPHHEILKESEKQQLLERY---CVS 163
>gi|326430122|gb|EGD75692.1| polymerase II polypeptide E [Salpingoeca sp. ATCC 50818]
Length = 201
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 96/147 (65%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+QLC DRGY V E+ +T +F+++FG P RP SEL + AH D +++ +F+
Sbjct: 14 VQLCSDRGYSVPHTEVSKT--EFEQRFGSDP---RP--SELDSVFAHKKDEQNRIAIFWA 66
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYI-LEYFLESELL 119
D+ KIGI +K Y ++ ++ I+ IIV Q +TPSA +++ D A I ++ F +EL+
Sbjct: 67 DDLKIGISKVKEYLDKLTQQGINAGIIVAQAKLTPSASKAVRDAASAGITVQVFDITELI 126
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT HELVP+H+VL+ EEKQ LL RY
Sbjct: 127 VNITRHELVPQHVVLSKEEKQALLQRY 153
>gi|149034615|gb|EDL89352.1| rCG29511, isoform CRA_f [Rattus norvegicus]
Length = 175
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/62 (85%), Positives = 57/62 (91%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DE 62
E
Sbjct: 78 GE 79
>gi|212722800|ref|NP_001132429.1| hypothetical protein [Zea mays]
gi|194694360|gb|ACF81264.1| unknown [Zea mays]
gi|414586666|tpg|DAA37237.1| TPA: hypothetical protein ZEAMMB73_455773 [Zea mays]
Length = 206
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 94/145 (64%), Gaps = 5/145 (3%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY V +++ +F E++G+ R EL + P+DQ++VFFP+
Sbjct: 20 EMLRDRGYGVRDEQIKLERHKFIERYGNPVR-----RDELTFNATKLNGPSDQIYVFFPN 74
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E K G+KTI+ Y ++M+ E + I+VVQ ++ A+ ++ +++ KY LE F E+ELL+N
Sbjct: 75 EAKPGVKTIRNYVEKMKNENVFAGILVVQQALSAFARSAVQEVSQKYHLEVFQEAELLVN 134
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
I +H LVPEH++LTPE+K+ LL RY
Sbjct: 135 IKDHVLVPEHVLLTPEDKKTLLERY 159
>gi|22902245|gb|AAH37681.1| Polymerase (RNA) II (DNA directed) polypeptide E [Mus musculus]
gi|148699663|gb|EDL31610.1| mCG13422, isoform CRA_c [Mus musculus]
Length = 96
Score = 119 bits (297), Expect = 5e-24, Method: Composition-based stats.
Identities = 53/62 (85%), Positives = 57/62 (91%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DE 62
E
Sbjct: 78 GE 79
>gi|170098869|ref|XP_001880653.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644178|gb|EDR08428.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 208
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 91/145 (62%), Gaps = 2/145 (1%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRG+LV+ DE+ L +F+ + + R++L + TDQ+FVFF +
Sbjct: 19 ELVKDRGFLVSDDEIHMDLQRFRSLYANNSGV--VDRNQLNFYTTSRTNSTDQIFVFFSE 76
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E +G+KT++ ++E++I R IIV MTPSA++ +V MA +Y LE F E++LL+N
Sbjct: 77 EKSVGVKTMRKLLGILEEKSIQRGIIVFPGNMTPSARKVIVAMAQQYRLEEFSEADLLVN 136
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
I H LVP H VL+P+EK+ LL +Y
Sbjct: 137 IVHHTLVPRHDVLSPDEKKTLLEKY 161
>gi|399218319|emb|CCF75206.1| unnamed protein product [Babesia microti strain RI]
Length = 212
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 101/155 (65%), Gaps = 16/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFG--DKPSEKRPARSELIVLVAHNDDPTDQMFVFF 59
++ DRGY + E + L +FK ++ DK RS+++++ + +DP D++ V+F
Sbjct: 17 EMLEDRGYFIPIQEKLEILSEFKSRYEMYDK------IRSKMLLVASMRNDPNDKIIVYF 70
Query: 60 PDE-PKIGIK-------TIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
DE K G+K +++ +RM++ IHRAI+V Q +TP AK+++ + AP+ I+E
Sbjct: 71 ADETKKTGVKPIRELVPSLRRLTERMEDHGIHRAILVTQNVLTPFAKEAISEAAPRNIIE 130
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F+E+ELL+NIT+HELVP+H+ LT EEK+ LL RY
Sbjct: 131 NFMETELLVNITKHELVPKHVPLTAEEKRNLLQRY 165
>gi|388583908|gb|EIM24209.1| RPB5 subunit of DNA-directed RNA polymerase [Wallemia sebi CBS
633.66]
Length = 207
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 90/145 (62%), Gaps = 3/145 (2%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRG+ V+Q E++ +FKE + R+ L + D+P DQ+FVFF D
Sbjct: 19 EMVQDRGFAVSQQEIEIPYAEFKETYAGNGI---IDRASLHFFASLEDNPDDQIFVFFAD 75
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
EP IGIKT++ + ++E I R I++ +TP+A + + +MA Y L+ F ESEL +N
Sbjct: 76 EPSIGIKTMRKFLTVLEERKIGRGILIYPEKLTPAANKVIAEMAADYKLQAFTESELQVN 135
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H+LVP+H VLT EEK+ LL +Y
Sbjct: 136 ITHHQLVPQHEVLTAEEKKLLLQKY 160
>gi|149034609|gb|EDL89346.1| rCG29511, isoform CRA_b [Rattus norvegicus]
Length = 167
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/61 (85%), Positives = 56/61 (91%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
QLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 11 QLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPG 70
Query: 62 E 62
E
Sbjct: 71 E 71
>gi|156089419|ref|XP_001612116.1| RNA polymerase Rpb5, N-terminal domain containing protein [Babesia
bovis]
gi|154799370|gb|EDO08548.1| RNA polymerase Rpb5, N-terminal domain containing protein [Babesia
bovis]
Length = 205
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 97/148 (65%), Gaps = 9/148 (6%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFG--DKPSEKRPARSELIVLVAHNDDPTDQMFVFF 59
++ DRGY + E +T +FK ++ D+ RS+++++ + D ++ V+F
Sbjct: 17 EMLEDRGYFIPNQERLETFAEFKARYELYDR------VRSKMLLVASLKTDKDAKLLVYF 70
Query: 60 PDE-PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESEL 118
DE K G+K I+ ++M++ IHRAI+V Q +TP AK ++++ AP+ I+E FLE+EL
Sbjct: 71 ADETKKTGVKPIRELTEKMEDHDIHRAILVTQNVLTPFAKDAILEAAPRNIIENFLETEL 130
Query: 119 LINITEHELVPEHIVLTPEEKQELLTRY 146
L+NIT+HELVP+HI LT +EKQ LL RY
Sbjct: 131 LVNITKHELVPKHIPLTADEKQTLLQRY 158
>gi|119589956|gb|EAW69550.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_c [Homo sapiens]
gi|194381594|dbj|BAG58751.1| unnamed protein product [Homo sapiens]
Length = 117
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/70 (81%), Positives = 61/70 (87%)
Query: 77 MQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELVPEHIVLTP 136
MQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLINITEHELVPEH+V+T
Sbjct: 1 MQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTK 60
Query: 137 EEKQELLTRY 146
EE ELL RY
Sbjct: 61 EEVTELLARY 70
>gi|71029810|ref|XP_764548.1| DNA-directed RNA polymerase II [Theileria parva strain Muguga]
gi|68351502|gb|EAN32265.1| DNA-directed RNA polymerase II, putative [Theileria parva]
Length = 205
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 97/146 (66%), Gaps = 5/146 (3%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY + E +T +FK ++ + EK RS+++++ + +++ V+F D
Sbjct: 17 EMLEDRGYFIPVQEKLETFAEFKARY--EMHEK--VRSKMLLVASQRTASENKLLVYFAD 72
Query: 62 EPK-IGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
E K G+K I+ +RM++ IHRAI+V Q +TP AK ++++ PK I+E F+E+ELL+
Sbjct: 73 EKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAYPKNIIENFMETELLV 132
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+HELVP+HI LT EEKQ LL +Y
Sbjct: 133 NITKHELVPKHIPLTMEEKQNLLQKY 158
>gi|429329987|gb|AFZ81746.1| DNA-directed RNA polymerase, putative [Babesia equi]
Length = 205
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 93/146 (63%), Gaps = 5/146 (3%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY + E +T +FK ++ RS+++++ + +++ VFF D
Sbjct: 17 EMLEDRGYFIPSQEKLETFAEFKARYESYDR----TRSKMLLVASQKTASENKVLVFFAD 72
Query: 62 E-PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
E K G+K I+ +RM++ IHRAI+V Q +T AK ++++ +P+ I+E F+E+ELL+
Sbjct: 73 ETKKTGVKPIRELTERMEDHDIHRAILVTQNVLTSFAKDAIMEASPRNIIENFMETELLV 132
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT HELVP+H+ LT EEKQ LL RY
Sbjct: 133 NITRHELVPKHVPLTMEEKQNLLQRY 158
>gi|84997627|ref|XP_953535.1| DNA-directed RNA polymerase, subunit (RPB5 homologue) [Theileria
annulata strain Ankara]
gi|65304531|emb|CAI76910.1| DNA-directed RNA polymerase, subunit (RPB5 homologue), putative
[Theileria annulata]
Length = 205
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 96/148 (64%), Gaps = 9/148 (6%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFG--DKPSEKRPARSELIVLVAHNDDPTDQMFVFF 59
++ DRGY + E +T +FK ++ DK RS+++++ + +++ V+F
Sbjct: 17 EMLEDRGYFIPSQEKLETFAEFKARYEMYDK------VRSKMLLVASLRTAAENKLLVYF 70
Query: 60 PDEPK-IGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESEL 118
DE K G+K I+ +RM++ IHRAI+V Q +TP AK ++++ PK I+E F+E+EL
Sbjct: 71 ADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAYPKNIIENFMETEL 130
Query: 119 LINITEHELVPEHIVLTPEEKQELLTRY 146
L+NIT+HELVP+HI LT EEKQ LL +Y
Sbjct: 131 LVNITKHELVPKHIPLTMEEKQNLLQKY 158
>gi|164656180|ref|XP_001729218.1| hypothetical protein MGL_3685 [Malassezia globosa CBS 7966]
gi|159103108|gb|EDP42004.1| hypothetical protein MGL_3685 [Malassezia globosa CBS 7966]
Length = 159
Score = 115 bits (287), Expect = 8e-23, Method: Composition-based stats.
Identities = 58/144 (40%), Positives = 90/144 (62%), Gaps = 3/144 (2%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRGY V+++EL+ LD FK + S R+ + H D P +++FVF+
Sbjct: 19 ELVADRGYEVSEEELNVDLDTFKAEV---TSNGIVDRNRMNFFTQHKDKPEERLFVFYST 75
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E +G+KT++ + ++E+ I R II+ MT +AK+ + M + +LE F E+ LL+N
Sbjct: 76 ERNVGVKTMRQFINILEEKNITRGIIIWSDKMTSAAKKVIEAMRLQLVLEDFEEAFLLVN 135
Query: 122 ITEHELVPEHIVLTPEEKQELLTR 145
IT H+LVP+H VLTP+EK+ELL R
Sbjct: 136 ITHHQLVPKHEVLTPDEKKELLHR 159
>gi|353236892|emb|CCA68877.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Piriformospora indica DSM 11827]
Length = 211
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 91/145 (62%), Gaps = 3/145 (2%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRGY V +E++ TLD+FK+QF S R+ L +DP ++V+F D
Sbjct: 23 ELVRDRGYAVADEEINMTLDEFKQQFARAGSV--VDRASLGFWAHLRNDPATSIYVYFCD 80
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E +G++ +K + E+ I R II+ +TP+A++ L M P+Y LE F E+ELL+N
Sbjct: 81 ERSVGVQHMKKLLGILDEKNIVRGIIIYPNVLTPAARKVLTGM-PQYQLEEFAETELLVN 139
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT+H LVP+H +L+PE+K+ LL RY
Sbjct: 140 ITQHTLVPQHEILSPEQKRLLLERY 164
>gi|149595717|ref|XP_001520959.1| PREDICTED: hypothetical protein LOC100092316, partial
[Ornithorhynchus anatinus]
Length = 157
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/62 (83%), Positives = 56/62 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
QLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 50 FQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 109
Query: 61 DE 62
E
Sbjct: 110 GE 111
>gi|340386554|ref|XP_003391773.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like, partial [Amphimedon queenslandica]
Length = 124
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 62/76 (81%)
Query: 71 KTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELVPE 130
K C I RAIIVVQ GMTPSAKQ+LVDMAPKYILE F+E+EL+INITEHELVPE
Sbjct: 4 KNACHLFLLSNISRAIIVVQQGMTPSAKQALVDMAPKYILEQFMEAELMINITEHELVPE 63
Query: 131 HIVLTPEEKQELLTRY 146
HIV+T EEK+ELL RY
Sbjct: 64 HIVMTTEEKRELLARY 79
>gi|320582063|gb|EFW96281.1| RNA polymerase subunit ABC27 [Ogataea parapolymorpha DL-1]
Length = 214
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 93/151 (61%), Gaps = 9/151 (5%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------M 55
++ DRGY +TQ+E+D +LDQF+E+ D S P R + + + ++ +
Sbjct: 20 EMVRDRGYYITQEEIDISLDQFREKICD--SMGMPQRKLMSFQANASQEAAEKYGDLGPL 77
Query: 56 FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLE 115
+V F DEP +GI T+K +CQ + ++ I + Q MTPSA +++ P I+E F E
Sbjct: 78 WVEFCDEPSVGITTMKNFCQHIADKNFATGIFIYQQNMTPSATKAIAVAEPA-IIETFQE 136
Query: 116 SELLINITEHELVPEHIVLTPEEKQELLTRY 146
+++++NIT HELVP+HI L+ EEK+ELL RY
Sbjct: 137 ADIIVNITHHELVPKHIRLSTEEKKELLARY 167
>gi|357497659|ref|XP_003619118.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355494133|gb|AES75336.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 205
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 90/145 (62%), Gaps = 6/145 (4%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
Q+ DR Y V E++ + + K +FG+ + R +L + + DDP+D+++VFF D
Sbjct: 20 QMLRDRNYRVLDSEVNMSKQELKAKFGENMN-----RKDLTIQTTNKDDPSDKIYVFFRD 74
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
+ K+G+ TIKT + E ++RAIIVVQ + A+ L ++ + +E FLE ELL+N
Sbjct: 75 DAKLGVSTIKTIKDLILTEGVYRAIIVVQNELKSKARSEL-NLFSEVRIEAFLEDELLVN 133
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
+ EH LVPEH VLT EK++LL+ Y
Sbjct: 134 VIEHVLVPEHQVLTNAEKKDLLSTY 158
>gi|414586665|tpg|DAA37236.1| TPA: hypothetical protein ZEAMMB73_455773 [Zea mays]
Length = 203
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 93/145 (64%), Gaps = 8/145 (5%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY V +++ +F E++G+ R EL + P+DQ++VFFP+
Sbjct: 20 EMLRDRGYGVRDEQIKLERHKFIERYGNPVR-----RDELTFNATKLNGPSDQIYVFFPN 74
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E K G+KTI+ Y ++M+ E + I+VVQ ++ A+ ++ +++ KY LE E+ELL+N
Sbjct: 75 EAKPGVKTIRNYVEKMKNENVFAGILVVQQALSAFARSAVQEVSQKYHLE---EAELLVN 131
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
I +H LVPEH++LTPE+K+ LL RY
Sbjct: 132 IKDHVLVPEHVLLTPEDKKTLLERY 156
>gi|403418276|emb|CCM04976.1| predicted protein [Fibroporia radiculosa]
Length = 207
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 88/145 (60%), Gaps = 3/145 (2%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRG+ V+ DE++ L F+ + RS+L H ++P Q+FVFF D
Sbjct: 19 ELVKDRGFQVSDDEINMDLATFRSHYASNLGS--VDRSQLNFFTNHKNNPMTQIFVFFSD 76
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E +G+KT++ ++E+ I + IIV MTPSA++ + M + LE F E++LL+N
Sbjct: 77 EKSVGVKTMRKMLTILEEKNIMQGIIVFPGNMTPSARKVISAMT-NFALEEFAEADLLVN 135
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H LVP+H VL+P+EK+ELL Y
Sbjct: 136 ITHHTLVPKHEVLSPKEKKELLETY 160
>gi|297830274|ref|XP_002883019.1| hypothetical protein ARALYDRAFT_341806 [Arabidopsis lyrata subsp.
lyrata]
gi|297328859|gb|EFH59278.1| hypothetical protein ARALYDRAFT_341806 [Arabidopsis lyrata subsp.
lyrata]
Length = 211
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 90/148 (60%), Gaps = 7/148 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DRGY + E+ TL +F E++G+ + KR A L+ L A +D D++++FFP
Sbjct: 19 MQMLKDRGYSIEDSEITMTLGEFIEKYGE--NMKRKA---LVTLKAKKNDDNDKLYIFFP 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQ--TGMTPSAKQSLVDMAPKYILEYFLESEL 118
++ K+G+ +K Y R++ E + RAI+V Q + A+ S+ PK+ +E F E EL
Sbjct: 74 NKAKVGVADMKKYINRLKSENVFRAILVKQDIKEFSRHAQLSIGAAYPKFNIEVFQEKEL 133
Query: 119 LINITEHELVPEHIVLTPEEKQELLTRY 146
++N+ H VPEH LT EEKQ+ L RY
Sbjct: 134 IVNVNHHVFVPEHQALTTEEKQQFLERY 161
>gi|363753390|ref|XP_003646911.1| hypothetical protein Ecym_5335 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890547|gb|AET40094.1| hypothetical protein Ecym_5335 [Eremothecium cymbalariae
DBVPG#7215]
Length = 215
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 94/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E+D LD FK ++ D S RP R +++ +PT++
Sbjct: 21 EMVRDRGYFITQEEIDLALDDFKAKYCD--SMGRPQRK----MMSFQSNPTEESIVKSPQ 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
+++ F DEP +GIKT+K + + E+ I + Q G+TPSA + L +AP I E
Sbjct: 75 MGSVWIEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLLPSVAPATI-E 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ EEK+ELL RY
Sbjct: 134 TFNEASLVVNITHHELVPKHIKLSDEEKRELLKRY 168
>gi|397611881|gb|EJK61509.1| hypothetical protein THAOC_17988 [Thalassiosira oceanica]
Length = 581
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 75/98 (76%)
Query: 49 DDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKY 108
DD T+Q+FVFFP++ K+G+K IK RM++E + AI+V++ +TP AKQ++ +M+ +
Sbjct: 437 DDDTNQLFVFFPEDEKVGVKPIKILTDRMKDEQVTNAILVLRGNITPFAKQAVAEMSDTF 496
Query: 109 ILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+E+F E+ELL++ITEH LVPEH VL+ EKQELL RY
Sbjct: 497 RIEHFKEAELLVDITEHTLVPEHQVLSQNEKQELLRRY 534
>gi|19114099|ref|NP_593187.1| DNA-directed RNA polymerase I, II and III subunit Rpb5
[Schizosaccharomyces pombe 972h-]
gi|2500628|sp|Q09191.1|RPAB1_SCHPO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPC24B
gi|256599719|pdb|3H0G|E Chain E, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599731|pdb|3H0G|Q Chain Q, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|1345439|dbj|BAA07843.1| RNA polymerase II 5th largest subunit [Schizosaccharomyces pombe]
gi|2465157|emb|CAB16886.1| DNA-directed RNA polymerase I, II and III subunit Rpb5
[Schizosaccharomyces pombe]
gi|2708526|gb|AAB92515.1| Rpb5 [Schizosaccharomyces pombe]
Length = 210
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 87/146 (59%), Gaps = 3/146 (2%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVA-HNDDPTDQMFVFFP 60
QL HDRGY V+Q ELD TLDQFK + R+ L ND +++ F
Sbjct: 20 QLVHDRGYGVSQAELDLTLDQFKAMHCGMG--RNLDRTTLSFYAKPSNDSNKGTIYIEFA 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
EP +GIK ++T+ + + I++ MTPSA + + + ++ +E F ES+L++
Sbjct: 78 KEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTGQFTIETFQESDLIV 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT HELVP+HI+L+P+EK+ELL RY
Sbjct: 138 NITHHELVPKHILLSPDEKKELLDRY 163
>gi|195164197|ref|XP_002022935.1| GL16452 [Drosophila persimilis]
gi|194104997|gb|EDW27040.1| GL16452 [Drosophila persimilis]
Length = 126
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ HDRGYLVTQ ELDQT++QF E FGDKPSE+RP RS+L +++ H DDP ++M VFFP+
Sbjct: 23 EMSHDRGYLVTQGELDQTVEQFTELFGDKPSEQRPMRSDLTMVLTHADDPKNRMLVFFPE 82
Query: 62 EPKIGIKTIKTYCQRMQEET 81
EPK+ ++TIK + RM+ T
Sbjct: 83 EPKVAVRTIKAFANRMRPRT 102
>gi|45190642|ref|NP_984896.1| AER036Wp [Ashbya gossypii ATCC 10895]
gi|54036391|sp|Q757H7.1|RPAB1_ASHGO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|44983621|gb|AAS52720.1| AER036Wp [Ashbya gossypii ATCC 10895]
gi|374108119|gb|AEY97026.1| FAER036Wp [Ashbya gossypii FDAG1]
Length = 215
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 95/155 (61%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E+D +L+ FK ++ D S RP R +++ +PT++
Sbjct: 21 EMVRDRGYFITQEEVDLSLEDFKAKYCD--SMGRPQRK----MMSFQSNPTEETLKKSPN 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +GIKT+K + + E+ I + Q G+TPSA + L +AP I E
Sbjct: 75 MGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLLPSVAPATI-E 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ EEK+ELL RY
Sbjct: 134 TFNETALVVNITHHELVPKHIKLSDEEKKELLKRY 168
>gi|403257973|ref|XP_003921562.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Saimiri boliviensis boliviensis]
Length = 87
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 59/70 (84%)
Query: 77 MQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELVPEHIVLTP 136
MQEE I RA+ VVQ GMTPSAKQSLVDMAPK ILE FL+ ELLINITEHELVPEH+V+T
Sbjct: 1 MQEENITRALFVVQQGMTPSAKQSLVDMAPKCILEQFLQQELLINITEHELVPEHVVMTK 60
Query: 137 EEKQELLTRY 146
EE ELL RY
Sbjct: 61 EEVTELLARY 70
>gi|403223518|dbj|BAM41648.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 205
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 95/148 (64%), Gaps = 9/148 (6%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFG--DKPSEKRPARSELIVLVAHNDDPTDQMFVFF 59
++ DRGY + E +T +FK ++ DK RS+++++ + +++ V+F
Sbjct: 17 EMLEDRGYFIPGKERLETFAEFKARYELYDK------MRSKMLLVASQKTASDNKLLVYF 70
Query: 60 PDEP-KIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESEL 118
DE K G+K I+ +RM++ IHRAI+V + +TP AK ++++ P+ I+E F+E+EL
Sbjct: 71 ADETRKTGVKPIRELTERMEDHDIHRAILVTRNVLTPFAKDAIMEAYPRNIIENFMETEL 130
Query: 119 LINITEHELVPEHIVLTPEEKQELLTRY 146
L+NIT HELVP+HI LT +EKQ LL +Y
Sbjct: 131 LVNITRHELVPKHIPLTMDEKQNLLQKY 158
>gi|366996969|ref|XP_003678247.1| hypothetical protein NCAS_0I02370 [Naumovozyma castellii CBS 4309]
gi|342304118|emb|CCC71905.1| hypothetical protein NCAS_0I02370 [Naumovozyma castellii CBS 4309]
Length = 215
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 94/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP- 60
++ DRGY +TQ+E+D +L+ FK ++ D S RP R +++ +PT++ FP
Sbjct: 21 EMVRDRGYFITQEEVDLSLEDFKTKYCD--SMGRPQRK----MMSFQANPTEESIAKFPS 74
Query: 61 ---------DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
DEP +G+KT+K++ +QE+ I V QT +TPSA + LV P +E
Sbjct: 75 MGSLWAEFCDEPSVGVKTMKSFVIHIQEKNFQTGIFVFQTNVTPSAMK-LVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ EEK+ELL RY
Sbjct: 134 TFHEASLVVNITHHELVPKHIRLSEEEKRELLKRY 168
>gi|254570507|ref|XP_002492363.1| RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|238032161|emb|CAY70112.1| RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|328353624|emb|CCA40022.1| DNA-directed RNA polymerase II subunit E [Komagataella pastoris CBS
7435]
Length = 214
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 94/151 (62%), Gaps = 9/151 (5%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------M 55
++ DRGY ++Q+E+DQ+L++F+ + D S P R + L + ++ +
Sbjct: 20 EMAADRGYFISQEEMDQSLEEFRSKICD--SMGNPQRKLMSFLANPTPEALEKYSDLGTL 77
Query: 56 FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLE 115
+V F DEP +GIKT++ +C R+QE+ I + Q +TPSA + + ++P I+E F E
Sbjct: 78 WVEFCDEPSVGIKTMRNFCLRIQEKNFSTGIFIYQNNITPSANKMIPTVSPA-IIETFQE 136
Query: 116 SELLINITEHELVPEHIVLTPEEKQELLTRY 146
S+L++NIT HELVP+HI L+ EK +LL RY
Sbjct: 137 SDLVVNITHHELVPKHIRLSDGEKSQLLQRY 167
>gi|291000790|ref|XP_002682962.1| predicted protein [Naegleria gruberi]
gi|284096590|gb|EFC50218.1| predicted protein [Naegleria gruberi]
Length = 229
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 95/164 (57%), Gaps = 18/164 (10%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPA----------RSELIVLVAHNDD 50
+Q+ RGY+V + E + L +F+ +FG P+ + R L ++ + DD
Sbjct: 19 LQMLDARGYMVLESEKNMDLAEFESKFGTGPNNVSQSGQARGYTTIGRDRLSIVTSMADD 78
Query: 51 PTDQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVV-------QTGMTPSAKQSLVD 103
P++ +FVFFP IG+K IK Y +M++ + RAI+V+ Q ++ AK+++
Sbjct: 79 PSEMIFVFFPATKAIGMKQIKDYHSKMKDNNVKRAILVLRPADSFQQKDLSSQAKRAIEA 138
Query: 104 M-APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ A YILE F E+ELL+NITEH LVP+H+ L + +ELL RY
Sbjct: 139 LQAIGYILETFKETELLVNITEHVLVPQHVPLNKAQHEELLQRY 182
>gi|58259413|ref|XP_567119.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Cryptococcus
neoformans var. neoformans JEC21]
gi|134107497|ref|XP_777633.1| hypothetical protein CNBA7540 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260327|gb|EAL22986.1| hypothetical protein CNBA7540 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223256|gb|AAW41300.1| DNA-directed RNA polymerases ii 24 kda polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 221
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 92/154 (59%), Gaps = 9/154 (5%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPS---------EKRPARSELIVLVAHNDDPT 52
++ DRGYL+ E++ + ++FK++ G S +K +RS + H +D T
Sbjct: 21 EMVRDRGYLLADYEINVSFEEFKDRHGATGSVEWMKCPQADKSSSRSNMSFDAIHENDNT 80
Query: 53 DQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEY 112
D++FV+F + + ++KT+ M + R II+ M+P+AK++L +M +Y LE
Sbjct: 81 DKIFVYFCADKNVSKASMKTFIGSMDKMGARRGIIIWSEKMSPAAKKTLQEMQSEYHLED 140
Query: 113 FLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F ES+LL+NIT+H LVP+H V+ PEEK L+ RY
Sbjct: 141 FPESDLLVNITKHFLVPKHTVMKPEEKSALIKRY 174
>gi|389742519|gb|EIM83705.1| DNA-directed RNA polymerase RPB5 subunit [Stereum hirsutum FP-91666
SS1]
Length = 209
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 87/145 (60%), Gaps = 3/145 (2%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRGY V DE+ L FK + + S R++L + + +FVFF D
Sbjct: 21 ELVKDRGYQVADDEIHMDLTTFKSHYAN--SGGSVDRNQLNFFTNLRVNVEEHIFVFFSD 78
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E +G+KT++ Q M E+ I R II+ MTP+A++ +V MA ++ +E F E++LL+N
Sbjct: 79 EKSVGVKTMRKLLQIMTEKNIRRGIIIFPGIMTPAARKVIVSMA-EFKVEEFSEADLLVN 137
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H+LVP H VLT EEK+ LL RY
Sbjct: 138 ITHHKLVPRHDVLTTEEKKMLLERY 162
>gi|255718861|ref|XP_002555711.1| KLTH0G15598p [Lachancea thermotolerans]
gi|238937095|emb|CAR25274.1| KLTH0G15598p [Lachancea thermotolerans CBS 6340]
Length = 215
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 93/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E+D +L+ FK ++ D S RP R +++ +P ++
Sbjct: 21 EMVRDRGYFITQEEVDLSLEDFKAKYCD--SMGRPQRK----MMSFQSNPVEEALEKFPN 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DE +GIKT+K + + E+ I V Q G+TPSA + L +AP I E
Sbjct: 75 MGSLWVEFCDEASVGIKTMKNFVIHISEKNFQTGIFVYQNGVTPSAMKLLPSVAPATI-E 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ EEK+ELL RY
Sbjct: 134 TFHEASLVVNITHHELVPKHIKLSDEEKKELLRRY 168
>gi|326430754|gb|EGD76324.1| hypothetical protein PTSG_01026 [Salpingoeca sp. ATCC 50818]
Length = 207
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 89/147 (60%), Gaps = 9/147 (6%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHND-DPTDQMFVFFP 60
Q+CHDRGYLVTQD ++ D+++E GDK R EL V + DPT + V+FP
Sbjct: 18 QMCHDRGYLVTQDMMEMPYDRWEEMHGDK------IRRELSYYVRKDSGDPTG-LLVYFP 70
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSL-VDMAPKYILEYFLESELL 119
EP + IK+ +R+ +E R IIV + + +A++++ V ++ E F E+EL
Sbjct: 71 VEPDVSTVLIKSLHERITKENSKRVIIVYRGKLAGAARKAMEVLKDSGFVFEVFTEAELA 130
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
IN+T H LVP+H VLT EKQ+LL RY
Sbjct: 131 INVTRHRLVPKHDVLTEAEKQQLLDRY 157
>gi|331224607|ref|XP_003324975.1| DNA-directed RNA polymerase II subunit E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309303965|gb|EFP80556.1| DNA-directed RNA polymerase II subunit E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 204
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 86/145 (59%), Gaps = 6/145 (4%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRGY V+ E++ +LD+FK P + R + A N + ++V++ D
Sbjct: 19 ELVRDRGYEVSDAEINVSLDEFK---ASDPISNKSTR---LNFAAINPETNQGIYVYYSD 72
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E +GIKT++ + + E+ + I++ MTPSA + + MA ++ LE F E+ELL+N
Sbjct: 73 EKSVGIKTMRKFISILDEKKLESGILIYSQAMTPSANKVIASMAQQFTLEAFQEAELLVN 132
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H +VP+H V+ PEEK+ LL RY
Sbjct: 133 ITRHIMVPKHEVMKPEEKKALLARY 157
>gi|213405090|ref|XP_002173317.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
gi|212001364|gb|EEB07024.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
Length = 211
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 88/148 (59%), Gaps = 7/148 (4%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVA---HNDDPTDQMFVF 58
QL HDRGY V+Q EL+ TLDQF+ + RS L +D T ++V
Sbjct: 21 QLVHDRGYAVSQSELELTLDQFRAMHCGMG--RNLDRSTLSFYAKPPPGSDKGT--IYVE 76
Query: 59 FPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESEL 118
F EP +GIK ++T+ + + I++ MTPSA + + + ++ +E F ES+L
Sbjct: 77 FAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANNMTPSATKIISTVTGQFTIETFQESDL 136
Query: 119 LINITEHELVPEHIVLTPEEKQELLTRY 146
++NIT HELVP+H++LTPEEK+ELL RY
Sbjct: 137 IVNITHHELVPKHVLLTPEEKKELLDRY 164
>gi|365982519|ref|XP_003668093.1| hypothetical protein NDAI_0A06960 [Naumovozyma dairenensis CBS 421]
gi|343766859|emb|CCD22850.1| hypothetical protein NDAI_0A06960 [Naumovozyma dairenensis CBS 421]
Length = 215
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 92/155 (59%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY +TQ+E+D +L+ FK ++ D S RP R +++ +PT++ FPD
Sbjct: 21 EMVRDRGYFITQEEVDLSLEDFKAKYCD--SMGRPQRK----MMSFQSNPTEESIAKFPD 74
Query: 62 ----------EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
E +G+KT+K + +QE+ I V QT +TPSA + LV P +E
Sbjct: 75 MGSLWAEFCDEESVGVKTMKNFVIHIQEKNFQTGIFVYQTNVTPSAMK-LVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ EEK+ELL RY
Sbjct: 134 TFHEASLVVNITHHELVPKHIKLSEEEKKELLKRY 168
>gi|238878328|gb|EEQ41966.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
albicans WO-1]
Length = 214
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 90/151 (59%), Gaps = 9/151 (5%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDP------TDQM 55
++ DRGY ++Q+ELD TL++F+ + D S P R ++ + T +
Sbjct: 20 EMVRDRGYYISQEELDMTLEEFRSKICD--SMGTPQRKQMCFQATPTAETLEKFPETGSL 77
Query: 56 FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLE 115
+V F DE +GIKT++ +C + E+ I + Q MTPSA + + ++P I E F E
Sbjct: 78 WVEFCDEASVGIKTMRNFCIHITEKNFSTGIFIYQNSMTPSANKLIPTVSPATI-EIFQE 136
Query: 116 SELLINITEHELVPEHIVLTPEEKQELLTRY 146
++L++NIT HELVP+H+ L EEK+ELLTRY
Sbjct: 137 NDLIVNITHHELVPKHLKLNREEKKELLTRY 167
>gi|367013608|ref|XP_003681304.1| hypothetical protein TDEL_0D05090 [Torulaspora delbrueckii]
gi|359748964|emb|CCE92093.1| hypothetical protein TDEL_0D05090 [Torulaspora delbrueckii]
Length = 215
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY + Q+E++ +L+ FK ++ D S RP R +++ +PT++
Sbjct: 21 EMVKDRGYFIAQEEIELSLEDFKVKYCD--SMGRPQRK----MMSFQSNPTEESITKFPN 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +G+KT+KT+ +QE+ I V Q +TPSA + LV P +E
Sbjct: 75 LGSLWVEFCDEPTVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMK-LVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ EEK+ELL RY
Sbjct: 134 TFHEASLVVNITHHELVPKHIKLSEEEKKELLKRY 168
>gi|241950235|ref|XP_002417840.1| DNA-directed RNA polymerases I, II and III subunit, putative
[Candida dubliniensis CD36]
gi|223641178|emb|CAX45555.1| DNA-directed RNA polymerases I, II and III subunit, putative
[Candida dubliniensis CD36]
Length = 214
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 90/151 (59%), Gaps = 9/151 (5%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDP------TDQM 55
++ DRGY ++Q+ELD TL++F+ + D S P R ++ + T +
Sbjct: 20 EMVRDRGYYISQEELDMTLEEFRSKICD--SMGTPQRKQMCFQATPTGETLEKFPETGSL 77
Query: 56 FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLE 115
+V F DE +GIKT++ +C + E+ I + Q MTPSA + + ++P I E F E
Sbjct: 78 WVEFCDESSVGIKTMRNFCIHITEKNFSTGIFIYQNSMTPSANKLIPTVSPATI-EIFQE 136
Query: 116 SELLINITEHELVPEHIVLTPEEKQELLTRY 146
++L++NIT HELVP+H+ L EEK+ELLTRY
Sbjct: 137 NDLIVNITHHELVPKHLKLNHEEKKELLTRY 167
>gi|1680605|gb|AAC60556.1|S59774_1 RNA polymerase subunit [Saccharomyces cerevisiae]
Length = 215
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E++ L+ FK ++ D S RP R +++ +PT++
Sbjct: 21 EMVKDRGYFITQEEVEWPLEDFKAKYCD--SMGRPQRK----MMSFQANPTEESISKFPD 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +G+KT+KT+ +QE+ I V Q +TPSA + LV P +E
Sbjct: 75 MGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMK-LVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ +EK+ELL RY
Sbjct: 134 TFNEAALVVNITHHELVPKHIRLSSDEKRELLKRY 168
>gi|344230604|gb|EGV62489.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Candida
tenuis ATCC 10573]
gi|344230605|gb|EGV62490.1| hypothetical protein CANTEDRAFT_114816 [Candida tenuis ATCC 10573]
Length = 214
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 92/155 (59%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY ++Q+ELD +LD+F+++ D S P R L+ +PT +
Sbjct: 20 EMVRDRGYYISQEELDMSLDEFRQKICD--SMNMPQRK----LMCFQANPTAESLEKFPE 73
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DE +GIKT++ +C + E I + Q+ +TPSA + + +AP I E
Sbjct: 74 LGTLWVEFCDEDSVGIKTMRNFCIHISERNFSTGIFIYQSSITPSANKLIPTVAPASI-E 132
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F ES+L++NIT HELVP+HI L+ EK+ELL RY
Sbjct: 133 TFQESDLVVNITHHELVPKHIKLSKGEKKELLDRY 167
>gi|385301817|gb|EIF45980.1| dna-directed rna polymerases ii 24 kda polypeptide [Dekkera
bruxellensis AWRI1499]
Length = 194
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 88/150 (58%), Gaps = 9/150 (6%)
Query: 3 LCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------MF 56
+ DRGY + Q+E+D LDQF+E+F D S P R + D ++ ++
Sbjct: 1 MVKDRGYYIPQEEIDLPLDQFREKFCD--SMGVPQRKLMSFQATPTQDALEKYGDLGPLW 58
Query: 57 VFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLES 116
V F DEP +GI+T+K +C + ++ I + Q MTPSA +++ P I E F ES
Sbjct: 59 VEFCDEPSVGIQTMKNFCAHIADKNFSTGIFIYQQNMTPSATKAIAVAEPATI-EIFQES 117
Query: 117 ELLINITEHELVPEHIVLTPEEKQELLTRY 146
E+++NIT HELVP+HI L+ EEK +LL RY
Sbjct: 118 EIVVNITHHELVPKHIRLSNEEKIDLLKRY 147
>gi|405118149|gb|AFR92924.1| DNA-directed RNA polymerase II 24 kda polypeptide [Cryptococcus
neoformans var. grubii H99]
Length = 255
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 88/145 (60%), Gaps = 3/145 (2%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY++ E++ + ++FK++ G S RS + H D TD++FV+F
Sbjct: 67 EMVRDRGYMLADYEINVSFEEFKDRHGATGS---VDRSNMSFDAIHESDNTDKIFVYFCA 123
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
+ + ++KT+ M + R II+ M+P+AK++L +M +Y LE F ES+LL+N
Sbjct: 124 DKNVSKASMKTFIGSMDKMGARRGIIIWSEKMSPAAKKTLQEMQSEYHLEDFPESDLLVN 183
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT+H LVP+H V+ PEEK L+ RY
Sbjct: 184 ITKHFLVPKHTVMKPEEKSALIKRY 208
>gi|126275976|ref|XP_001386931.1| DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
II subunit 5) [Scheffersomyces stipitis CBS 6054]
gi|126212800|gb|EAZ62908.1| DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
II subunit 5) [Scheffersomyces stipitis CBS 6054]
Length = 213
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 92/155 (59%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E+D +LD+F+ + D S RP R L+ +PT +
Sbjct: 19 EMVRDRGYYITQEEVDMSLDEFRAKICD--SMGRPQRK----LMCFQANPTAESLDKFPD 72
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DE +GIKT++ +C + E+ I + Q +TPSA + + ++P I E
Sbjct: 73 LGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQNSITPSANKLIPTVSPASI-E 131
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E +L++NIT HELVP+HI L+ +EK+ELL RY
Sbjct: 132 TFQEGDLVVNITHHELVPKHIKLSRDEKKELLDRY 166
>gi|365761982|gb|EHN03600.1| Rpb5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401841351|gb|EJT43753.1| RPB5-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 215
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E++ L+ FK ++ D S RP R +++ +PT++
Sbjct: 21 EMVKDRGYFITQEEVELPLEDFKAKYCD--SMGRPQRK----MMSFQANPTEESVSKFPE 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +G+KT+KT+ +QE+ I V Q +TPSA + LV P +E
Sbjct: 75 MGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMK-LVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ +EK+ELL RY
Sbjct: 134 TFNEAALVVNITHHELVPKHIRLSTDEKRELLKRY 168
>gi|50311991|ref|XP_456027.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|54036341|sp|Q6CJ62.1|RPAB1_KLULA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49645163|emb|CAG98735.1| KLLA0F21098p [Kluyveromyces lactis]
Length = 215
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 94/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E+D +L+ FK ++ D S +P R +++ +PT++
Sbjct: 21 EMVRDRGYFITQEEIDLSLEDFKAKYCD--SMGKPQRK----MMSFQSNPTEESIEKFPE 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DE +G+KT+K + + E+ I + Q+G+TPSA + L AP ++E
Sbjct: 75 MGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILPTAAPA-VIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ EK+ELL RY
Sbjct: 134 TFPEASLVVNITHHELVPKHIRLSEAEKKELLKRY 168
>gi|6319630|ref|NP_009712.1| Rpb5p [Saccharomyces cerevisiae S288c]
gi|133338|sp|P20434.1|RPAB1_YEAST RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=ABC27; AltName: Full=DNA-directed
RNA polymerases I, II, and III 27 kDa polypeptide
gi|9257127|pdb|1DZF|A Chain A, Rpb5 From S.Cerevisiae
gi|14278327|pdb|1I3Q|E Chain E, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278338|pdb|1I50|E Chain E, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278368|pdb|1I6H|E Chain E, Rna Polymerase Ii Elongation Complex
gi|20150716|pdb|1K83|E Chain E, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749620|pdb|1NIK|E Chain E, Wild Type Rna Polymerase Ii
gi|30749741|pdb|1NT9|E Chain E, Complete 12-Subunit Rna Polymerase Ii
gi|34810557|pdb|1PQV|E Chain E, Rna Polymerase Ii-Tfiis Complex
gi|46015418|pdb|1R5U|E Chain E, Rna Polymerase Ii Tfiib Complex
gi|46015783|pdb|1SFO|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965914|pdb|1R9S|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965926|pdb|1R9T|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966110|pdb|1TWA|E Chain E, Rna Polymerase Ii Complexed With Atp
gi|56966124|pdb|1TWC|E Chain E, Rna Polymerase Ii Complexed With Gtp
gi|56966134|pdb|1TWF|E Chain E, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966144|pdb|1TWG|E Chain E, Rna Polymerase Ii Complexed With Ctp
gi|56966154|pdb|1TWH|E Chain E, Rna Polymerase Ii Complexed With 2'datp
gi|58177168|pdb|1WCM|E Chain E, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679448|pdb|1Y1W|E Chain E, Complete Rna Polymerase Ii Elongation Complex
gi|61679465|pdb|1Y77|E Chain E, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679506|pdb|1Y1V|E Chain E, Refined Rna Polymerase Ii-tfiis Complex
gi|61679519|pdb|1Y1Y|E Chain E, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754247|pdb|2B63|E Chain E, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590858|pdb|2B8K|E Chain E, 12-Subunit Rna Polymerase Ii
gi|122920064|pdb|2E2H|E Chain E, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920079|pdb|2E2I|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920094|pdb|2E2J|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921033|pdb|2NVQ|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921069|pdb|2NVT|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921085|pdb|2NVX|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921100|pdb|2NVY|E Chain E, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921112|pdb|2NVZ|E Chain E, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104678|pdb|2JA5|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104693|pdb|2JA6|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104714|pdb|2JA7|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104726|pdb|2JA7|Q Chain Q, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104738|pdb|2JA8|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387187|pdb|2YU9|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877777|pdb|2R7Z|E Chain E, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172231|pdb|2R92|E Chain E, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172244|pdb|2R93|E Chain E, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613466|pdb|2VUM|E Chain E, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368737|pdb|3CQZ|E Chain E, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983594|pdb|3FKI|E Chain E, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781919|pdb|3GTG|E Chain E, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781932|pdb|3GTJ|E Chain E, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781945|pdb|3GTK|E Chain E, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781958|pdb|3GTL|E Chain E, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781971|pdb|3GTM|E Chain E, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781985|pdb|3GTO|E Chain E, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781998|pdb|3GTP|E Chain E, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782011|pdb|3GTQ|E Chain E, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104515|pdb|3H3V|F Chain F, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839445|pdb|3HOU|E Chain E, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839460|pdb|3HOU|Q Chain Q, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839475|pdb|3HOV|E Chain E, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839490|pdb|3HOW|E Chain E, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839505|pdb|3HOX|E Chain E, Complete Rna Polymerase Ii Elongation Complex V
gi|254839520|pdb|3HOY|E Chain E, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839535|pdb|3HOZ|E Chain E, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471950|pdb|3I4M|E Chain E, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471965|pdb|3I4N|E Chain E, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618769|pdb|3K1F|E Chain E, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914555|pdb|3K7A|E Chain E, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982478|pdb|3M3Y|E Chain E, Rna Polymerase Ii Elongation Complex C
gi|295982491|pdb|3M4O|E Chain E, Rna Polymerase Ii Elongation Complex B
gi|325053967|pdb|3PO2|E Chain E, Arrested Rna Polymerase Ii Elongation Complex
gi|325053982|pdb|3PO3|E Chain E, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634542|pdb|3QT1|E Chain E, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197459|pdb|3RZD|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197471|pdb|3RZO|E Chain E, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197483|pdb|3S14|E Chain E, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197495|pdb|3S15|E Chain E, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197507|pdb|3S16|E Chain E, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197519|pdb|3S17|E Chain E, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197531|pdb|3S1M|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197543|pdb|3S1N|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197555|pdb|3S1Q|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197567|pdb|3S1R|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197579|pdb|3S2D|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781200|pdb|3S2H|E Chain E, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251637|pdb|3J0K|E Chain E, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380840|pdb|4A3C|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546294|pdb|4A3B|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546312|pdb|4A3D|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546329|pdb|4A3E|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546346|pdb|4A3F|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546363|pdb|4A3J|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546380|pdb|4A3K|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546396|pdb|4A3L|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546413|pdb|4A3M|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977883|pdb|4A3G|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977898|pdb|4A3I|E Chain E, Rna Polymerase Ii Binary Complex With Dna
gi|380764983|pdb|4A93|E Chain E, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145450|pdb|4BBR|E Chain E, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145463|pdb|4BBS|E Chain E, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|287822|emb|CAA37381.1| RNA polymerase RPB5 subunit [Saccharomyces cerevisiae]
gi|396754|emb|CAA50472.1| DNA-directed RNA polymerase [Saccharomyces cerevisiae]
gi|536484|emb|CAA85113.1| RPB5 [Saccharomyces cerevisiae]
gi|151946543|gb|EDN64765.1| 25 kDa RNA polymerase subunit [Saccharomyces cerevisiae YJM789]
gi|190408693|gb|EDV11958.1| 25 kDa RNA polymerase subunit [Saccharomyces cerevisiae RM11-1a]
gi|207347621|gb|EDZ73732.1| YBR154Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270199|gb|EEU05422.1| Rpb5p [Saccharomyces cerevisiae JAY291]
gi|285810484|tpg|DAA07269.1| TPA: Rpb5p [Saccharomyces cerevisiae S288c]
gi|323334603|gb|EGA75977.1| Rpb5p [Saccharomyces cerevisiae AWRI796]
gi|323338690|gb|EGA79906.1| Rpb5p [Saccharomyces cerevisiae Vin13]
gi|323356099|gb|EGA87904.1| Rpb5p [Saccharomyces cerevisiae VL3]
gi|349576528|dbj|GAA21699.1| K7_Rpb5p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300997|gb|EIW12086.1| Rpb5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 215
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E++ L+ FK ++ D S RP R +++ +PT++
Sbjct: 21 EMVKDRGYFITQEEVELPLEDFKAKYCD--SMGRPQRK----MMSFQANPTEESISKFPD 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +G+KT+KT+ +QE+ I V Q +TPSA + LV P +E
Sbjct: 75 MGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMK-LVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ +EK+ELL RY
Sbjct: 134 TFNEAALVVNITHHELVPKHIRLSSDEKRELLKRY 168
>gi|365766868|gb|EHN08357.1| Rpb5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 215
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E++ L+ FK ++ D S RP R +++ +PT++
Sbjct: 21 EMVKDRGYFITQEEVELPLEDFKAKYCD--SMGRPQRK----MMSFQANPTEESISKFPD 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +G+KT+KT+ +QE+ I V Q +TPSA + LV P +E
Sbjct: 75 MGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMK-LVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ +EK+ELL RY
Sbjct: 134 TFNEAALVVNITHHELVPKHIRLSXDEKRELLKRY 168
>gi|290878169|emb|CBK39228.1| Rpb5p [Saccharomyces cerevisiae EC1118]
Length = 215
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E++ L+ FK ++ D S RP R +++ +PT++
Sbjct: 21 EMVKDRGYFITQEEVELPLEDFKAKYCD--SMGRPQRK----MMSFQANPTEESISKFPD 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +G+KT+KT+ +QE+ I V Q +TPSA + LV P +E
Sbjct: 75 MGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMK-LVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ +EK+ELL RY
Sbjct: 134 TFNEAALVVNITHHELVPKHIRLSNDEKRELLKRY 168
>gi|156848515|ref|XP_001647139.1| hypothetical protein Kpol_1036p23 [Vanderwaltozyma polyspora DSM
70294]
gi|156117823|gb|EDO19281.1| hypothetical protein Kpol_1036p23 [Vanderwaltozyma polyspora DSM
70294]
Length = 215
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 93/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY + Q+E+D +L+ FK ++ D S RP R +++ +PT++
Sbjct: 21 EMVRDRGYFIAQEEIDLSLEDFKAKYCD--SMGRPQRK----MMSFQANPTEETMEKFPT 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +G+KT+K + +QE+ I V QT +TPSA + LV P +E
Sbjct: 75 MSSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTGIFVYQTNVTPSAMK-LVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ EK+ELL +Y
Sbjct: 134 TFHEASLIVNITHHELVPKHIRLSENEKKELLKKY 168
>gi|444321044|ref|XP_004181178.1| hypothetical protein TBLA_0F01160 [Tetrapisispora blattae CBS 6284]
gi|387514222|emb|CCH61659.1| hypothetical protein TBLA_0F01160 [Tetrapisispora blattae CBS 6284]
Length = 215
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 93/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E+D +L+ FK ++ + S P R ++ +PT++
Sbjct: 21 EMVRDRGYFITQEEIDLSLEDFKSKYTN--SMGTPERKN----ISFQANPTEETLAKFPE 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +G+KT+KT+ +QE+ I V Q +TPSA + LV P +E
Sbjct: 75 LGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMK-LVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ EEK+ELL +Y
Sbjct: 134 TFHEASLIVNITHHELVPKHIRLSDEEKKELLKKY 168
>gi|323349753|gb|EGA83968.1| Rpb5p [Saccharomyces cerevisiae Lalvin QA23]
Length = 215
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E++ L+ FK ++ D S RP R +++ +PT++
Sbjct: 21 EMVKDRGYFITQEEVELPLEDFKAKYCD--SMGRPQRK----MMSFQANPTEESISKFPD 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +G+KT+KT+ +QE+ I V Q +TPSA + LV P +E
Sbjct: 75 MGSLWVEFCDEPSVGVKTMKTFVIHIQEKXFQTGIFVYQNNITPSAMK-LVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ +EK+ELL RY
Sbjct: 134 TFNEAALVVNITHHELVPKHIRLSXDEKRELLKRY 168
>gi|401626842|gb|EJS44762.1| rpb5p [Saccharomyces arboricola H-6]
Length = 215
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E++ L+ FK ++ D S RP R +++ +PT++
Sbjct: 21 EMVKDRGYFITQEEVELPLEDFKAKYCD--SMGRPQRK----MMSFQANPTEESITKFPE 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +G+KT+KT+ +QE+ I V Q +TPSA + LV P +E
Sbjct: 75 MGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMK-LVPSIPPASIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ +EK+ELL RY
Sbjct: 134 TFNEAALVVNITHHELVPKHIRLSTDEKKELLKRY 168
>gi|12229927|sp|Q9P4B9.1|RPAB1_KLUMA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|9651716|gb|AAF91238.1|AF225206_4 RNA polymerase subunit [Kluyveromyces marxianus]
Length = 215
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 94/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E+D +L+ FK ++ D S +P R +++ +PT++
Sbjct: 21 EMVRDRGYFITQEEIDLSLEDFKVKYCD--SMGKPQRK----MMSFQSNPTEESIEKFPE 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DE +G+KT+K + + E+ I + Q+G+TPSA + L AP ++E
Sbjct: 75 MGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILPTAAPA-VIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ EK+ELL RY
Sbjct: 134 TFPEASLVVNITHHELVPKHIRLSDAEKKELLKRY 168
>gi|410081459|ref|XP_003958309.1| hypothetical protein KAFR_0G01400 [Kazachstania africana CBS 2517]
gi|372464897|emb|CCF59174.1| hypothetical protein KAFR_0G01400 [Kazachstania africana CBS 2517]
Length = 215
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 91/155 (58%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY V +E+D +L+ FK ++ D S RP R +++ +P D+
Sbjct: 21 EMVKDRGYFVNDEEIDLSLEDFKAKYSD--SMGRPQRK----MMSFQANPNDEFLAKFPD 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +G+KT+K + +QE+ I + Q +TPSA + LV P +E
Sbjct: 75 LGSLWVEFCDEPSVGVKTMKNFVVHIQEKNYSTGIFIYQNNVTPSAMK-LVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ EEK+ELL RY
Sbjct: 134 TFQEASLVVNITHHELVPKHIRLSLEEKKELLKRY 168
>gi|50290313|ref|XP_447588.1| hypothetical protein [Candida glabrata CBS 138]
gi|54036350|sp|Q6FQA6.1|RPAB1_CANGA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49526898|emb|CAG60525.1| unnamed protein product [Candida glabrata]
Length = 215
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY + Q+ELD TL+ FK ++ D S R R +++ +PT++
Sbjct: 21 EMVRDRGYFIAQEELDLTLEDFKVKYCD--SMGRAQRK----MMSFQANPTEESMTKFPD 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +G+KT+KT+ +QE+ I + Q +TPSA + LV P +E
Sbjct: 75 MGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMK-LVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT H+LVP+HI L EEK ELL RY
Sbjct: 134 TFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRY 168
>gi|354545760|emb|CCE42488.1| hypothetical protein CPAR2_201310 [Candida parapsilosis]
Length = 214
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 90/151 (59%), Gaps = 9/151 (5%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------M 55
++ DRGY ++Q+ELD TL+QF+ + + E P R + + D+ +
Sbjct: 20 EMVKDRGYYISQEELDMTLEQFRAKVCNTMGE--PQRKLMCFQATPTAEQLDKFPDMGSL 77
Query: 56 FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLE 115
+V F DE +GIKT++ +C + E+ I + Q G+TPSA + + + P I E F E
Sbjct: 78 WVEFCDEASVGIKTMRNFCIHISEKNFSVGIFIYQNGITPSANKLIPTVQPATI-ETFQE 136
Query: 116 SELLINITEHELVPEHIVLTPEEKQELLTRY 146
++L++NIT HELVP+HI L+ +EK+ELL RY
Sbjct: 137 NDLIVNITHHELVPKHIKLSRDEKKELLERY 167
>gi|443896772|dbj|GAC74115.1| hypothetical protein PANT_10d00023 [Pseudozyma antarctica T-34]
Length = 283
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 84/145 (57%), Gaps = 2/145 (1%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRGY V DE++ L+ FK ++ P+ R++L H+ ++FVF+
Sbjct: 94 ELVRDRGYQVADDEINIDLESFKAEYA--PTGGSVDRTKLNFFTEHSAHENQRLFVFYSM 151
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E +G+KT++ + M+E I R II+ MT +A++ + M + LE F E+ LL+N
Sbjct: 152 ERNVGVKTMRQFISIMEERDIQRGIIIWPDKMTSAARKVIDAMRGTFHLEDFEEAYLLVN 211
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H LVP H L P+EK+ELL RY
Sbjct: 212 ITHHHLVPRHEPLYPDEKKELLQRY 236
>gi|448525471|ref|XP_003869121.1| Rpb5 protein [Candida orthopsilosis Co 90-125]
gi|380353474|emb|CCG22984.1| Rpb5 protein [Candida orthopsilosis]
Length = 214
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 9/151 (5%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------M 55
++ DRGY ++Q+EL+ TL+QF+ + + E P R + N + ++ +
Sbjct: 20 EMVKDRGYYISQEELEMTLEQFRSKVCNSMGE--PQRKLMCFQATPNAEQLEKFPDMGSL 77
Query: 56 FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLE 115
+V F DE +GIKT++ +C + E+ I + Q G+TPSA + + + P I E F E
Sbjct: 78 WVEFCDEASVGIKTMRNFCIHISEKNFSVGIFIYQNGITPSANKLIPTVQPATI-ETFQE 136
Query: 116 SELLINITEHELVPEHIVLTPEEKQELLTRY 146
++L++NIT HELVP+HI L+ +EK+ELL RY
Sbjct: 137 NDLIVNITHHELVPKHIKLSRDEKKELLERY 167
>gi|406605852|emb|CCH42738.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 215
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 91/155 (58%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY + +E+ L++F+ ++ D RP R L++ PT +
Sbjct: 21 EMALDRGYFIATEEITMNLEEFRSKYCDAMG--RPQRK----LMSFQASPTSESLGQFPN 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DE +GIKT+K + + E+ I + Q G+TPSA + + +AP ++E
Sbjct: 75 MGSLWVEFCDEASVGIKTMKNFVIHISEKNFSVGIFIYQNGITPSANKLIPTVAPA-VIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F ES+L++NIT HELVP+HIVL+ +EK+ELL RY
Sbjct: 134 TFQESDLIVNITHHELVPKHIVLSDDEKKELLERY 168
>gi|388855814|emb|CCF50598.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Ustilago hordei]
Length = 236
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRGY V DE++ L+ FK ++ P+ R++L H++ ++FVF+
Sbjct: 19 ELVRDRGYQVADDEINIDLETFKSEYA--PTGGSVDRTKLNFFTEHSEHENQRLFVFYSM 76
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E +G+KT++ + M+E I R II+ MT +A++ + M + LE F E+ LL+N
Sbjct: 77 ERNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDAMRGTFHLEDFEEAFLLVN 136
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H LVP+H L P+EK+ELL RY
Sbjct: 137 ITHHHLVPKHEPLYPQEKKELLARY 161
>gi|254578454|ref|XP_002495213.1| ZYRO0B06006p [Zygosaccharomyces rouxii]
gi|238938103|emb|CAR26280.1| ZYRO0B06006p [Zygosaccharomyces rouxii]
Length = 215
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 92/155 (59%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY + Q+E++ L+ FK ++ D S RP R +++ +PT++
Sbjct: 21 EMVKDRGYFIAQEEIELPLEDFKAKYCD--SMGRPQRK----MMSFQSNPTEESIAKFPS 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +G+KT+KT+ +QE+ I V Q +TPSA + LV P +E
Sbjct: 75 MGSLWVEFCDEPTVGVKTMKTFVIHIQEKNFQTGIFVYQNNVTPSAMK-LVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI + +EK+ELL RY
Sbjct: 134 TFHEASLVVNITHHELVPKHIRFSEDEKRELLKRY 168
>gi|357500691|ref|XP_003620634.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355495649|gb|AES76852.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 208
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 90/148 (60%), Gaps = 7/148 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ DR YLV + EL + + F ++G+ R +L + H ++P++++ VFF
Sbjct: 19 LQMLSDRNYLVEETELTMSREDFIFKYGEHMK-----REQLEINKTHRNNPSEKICVFFS 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAP--KYILEYFLESEL 118
D+ K+G+K ++ + RM +E + I+V QT ++ A+ ++ +M+ LE FLE EL
Sbjct: 74 DDAKLGVKIVRGFITRMLQENVDSGILVCQTKLSHYARSAVTEMSSVGSKRLEVFLEDEL 133
Query: 119 LINITEHELVPEHIVLTPEEKQELLTRY 146
L+NIT+HE VP H VLT EK+ LL +Y
Sbjct: 134 LVNITKHERVPPHQVLTEAEKRALLKKY 161
>gi|367006695|ref|XP_003688078.1| hypothetical protein TPHA_0M00690 [Tetrapisispora phaffii CBS 4417]
gi|357526385|emb|CCE65644.1| hypothetical protein TPHA_0M00690 [Tetrapisispora phaffii CBS 4417]
Length = 215
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 93/158 (58%), Gaps = 23/158 (14%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD---KPSEKRPARSELIVLVAHNDDPTDQ---- 54
++ DRGY ++QDE++ L+ F+ ++ D KP K +++ +PT++
Sbjct: 21 EMVRDRGYFISQDEIELPLEDFRAKYCDYMGKPQRK---------MMSFQANPTEESLEK 71
Query: 55 ------MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKY 108
++V F DEP +G+KT+K + +QE+ I V QT +TPSA + LV P
Sbjct: 72 FPETGSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTGIFVYQTNVTPSAMK-LVPSIPPA 130
Query: 109 ILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+E F E+ L++NIT HELVP+HI L+ EEK++LL RY
Sbjct: 131 TIETFHEASLVVNITHHELVPKHIRLSEEEKKDLLKRY 168
>gi|344302236|gb|EGW32541.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Spathaspora
passalidarum NRRL Y-27907]
Length = 214
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 90/155 (58%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E+D TLD+F+ + D S P R L+ PT +
Sbjct: 20 EMVRDRGYYITQEEIDMTLDEFRAKVCD--SMGVPQRK----LMCFQAQPTGESLEKFPD 73
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DE +GIKT++ +C + E+ + + Q +TPSA + + ++P I E
Sbjct: 74 LGALWVEFCDEASVGIKTMRNFCIHITEKNFSTGLFIYQNSITPSANKLIPTVSPASI-E 132
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E +L++NIT HELVP+HI L+ +EK+ELL RY
Sbjct: 133 TFQEGDLVVNITHHELVPKHIKLSKDEKKELLERY 167
>gi|71019505|ref|XP_759983.1| hypothetical protein UM03836.1 [Ustilago maydis 521]
gi|46099489|gb|EAK84722.1| hypothetical protein UM03836.1 [Ustilago maydis 521]
Length = 554
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 83/144 (57%), Gaps = 2/144 (1%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRGY V DE+ L+ FK ++ P+ R++L H + ++FVF+
Sbjct: 19 ELVRDRGYQVADDEISVDLETFKAEYA--PTGGSVDRNKLNFFTEHGEHENQRLFVFYSS 76
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
+ +G+KT++ + M+E I R II+ MT +A++ + M + LE F E+ LL+N
Sbjct: 77 DRNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDAMRGTFHLEDFEEAFLLVN 136
Query: 122 ITEHELVPEHIVLTPEEKQELLTR 145
IT H LVP+H L PEEK+ELL R
Sbjct: 137 ITHHHLVPKHEPLYPEEKKELLQR 160
>gi|343424911|emb|CBQ68449.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Sporisorium reilianum SRZ2]
Length = 208
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRGY V DE++ L+ FK ++ P+ R++L H++ ++FVF+
Sbjct: 19 ELVRDRGYQVADDEINVDLETFKAEYA--PTGGAVDRTKLNFFTEHSEHANQRLFVFYSM 76
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E +G+KT++ + M+E I R II+ MT +A++ + M + LE F E+ LL+N
Sbjct: 77 ERNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDAMRGTFHLEDFEEAFLLVN 136
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H LVP+H L P+EK+ELL RY
Sbjct: 137 ITHHHLVPKHEPLYPQEKKELLQRY 161
>gi|448112295|ref|XP_004202060.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
gi|359465049|emb|CCE88754.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
Length = 214
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 91/155 (58%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E++ +LD+F+ D S P R L+ +PT +
Sbjct: 20 EMVRDRGYYITQEEIEMSLDEFRAHVCD--SMGIPQRR----LMCFQANPTAEALEKFPS 73
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DE +GIKT++ +C + E+ I + Q +TPSA + + ++P I E
Sbjct: 74 LGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQASITPSATKLIPTVSPASI-E 132
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F ES+L++NIT HELVP+HI L+ +EK+ELL RY
Sbjct: 133 TFQESDLVVNITHHELVPKHIKLSKDEKKELLDRY 167
>gi|443920437|gb|ELU40353.1| hypothetical protein AG1IA_05623 [Rhizoctonia solani AG-1 IA]
Length = 133
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 80/139 (57%), Gaps = 23/139 (16%)
Query: 7 RGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDEPKIG 66
+GYLV +DE++ + FK F DDPT+Q+F+FF DE +
Sbjct: 18 QGYLVAEDEMNMDIQTFKSTF---------------------DDPTNQIFIFFADEKNVT 56
Query: 67 IKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHE 126
IKTI + + E+ I IIV MTPSA++ + M+ +Y LE F E++LL+NIT H+
Sbjct: 57 IKTI--FLGILDEKGITHGIIVFMEKMTPSARKVISAMSSQYSLEEFAEADLLVNITHHK 114
Query: 127 LVPEHIVLTPEEKQELLTR 145
LVP+H VLT EK+ LL R
Sbjct: 115 LVPQHQVLTQVEKKALLER 133
>gi|403218074|emb|CCK72566.1| hypothetical protein KNAG_0K02020 [Kazachstania naganishii CBS
8797]
Length = 215
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 92/155 (59%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E++ +L+ FK ++ D S RP R +++ +P ++
Sbjct: 21 EMVKDRGYFITQEEVELSLEDFKVKYCD--SMGRPQRK----MMSFQANPMEEAIAKFPD 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +G+KT+K + +QE+ I V Q +TPSA LV P +E
Sbjct: 75 MGSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQIGIFVYQNNVTPSA-MKLVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ +EK+ELL RY
Sbjct: 134 TFHETSLVVNITHHELVPKHIKLSTDEKKELLKRY 168
>gi|448114850|ref|XP_004202684.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
gi|359383552|emb|CCE79468.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
Length = 214
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 91/155 (58%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E++ +LD+F+ D S P R L+ +PT +
Sbjct: 20 EMVRDRGYYITQEEIEMSLDEFRAHVCD--SMGIPQRR----LMCFQANPTAEELEKFPS 73
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DE +GIKT++ +C + E+ I + Q +TPSA + + ++P I E
Sbjct: 74 LGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQASITPSATKLIPTVSPASI-E 132
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F ES+L++NIT HELVP+HI L+ +EK+ELL RY
Sbjct: 133 TFQESDLVVNITHHELVPKHIKLSKDEKKELLDRY 167
>gi|255728687|ref|XP_002549269.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240133585|gb|EER33141.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 214
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 91/151 (60%), Gaps = 9/151 (5%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------M 55
++ DRGY ++Q+E+D TL++F+ + D S P R ++ + ++ +
Sbjct: 20 EMVRDRGYYISQEEIDMTLEEFRSKICD--SMGNPQRKQMCFQAQPTGETLEKFPELGSL 77
Query: 56 FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLE 115
+V F DE +GIKT++ +C + E+ + + Q +TPSA + + ++P ++E F E
Sbjct: 78 WVEFCDESSVGIKTMRNFCIHITEKNFSTGLFIYQNSITPSANKLIPTVSPS-VIEIFQE 136
Query: 116 SELLINITEHELVPEHIVLTPEEKQELLTRY 146
S+L++NIT HELVP+H+ L+ +EK ELL RY
Sbjct: 137 SDLIVNITHHELVPKHLKLSKDEKVELLERY 167
>gi|50426767|ref|XP_461981.1| DEHA2G09988p [Debaryomyces hansenii CBS767]
gi|54036338|sp|Q6BIJ0.1|RPAB1_DEBHA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49657651|emb|CAG90451.1| DEHA2G09988p [Debaryomyces hansenii CBS767]
Length = 214
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 90/155 (58%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E+D +L +F+ + D S P R L+ +PT +
Sbjct: 20 EMVRDRGYYITQEEIDMSLAEFRSRICD--SMNVPQRK----LMCFQANPTAESLEKFPD 73
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DE +GIKT++ +C + E+ I + Q+ +TPSA + + ++P I E
Sbjct: 74 LGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITPSANKLIPTVSPASI-E 132
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E +L++NIT H+LVP+HI L +EK+ELL RY
Sbjct: 133 TFQEGDLVVNITHHDLVPKHIKLARDEKKELLERY 167
>gi|345562747|gb|EGX45783.1| hypothetical protein AOL_s00140g99 [Arthrobotrys oligospora ATCC
24927]
Length = 225
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 94/161 (58%), Gaps = 19/161 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELI--------VLVAHNDDPTD 53
++ DRGY +T++EL+ +LD FK ++ D S+ RP R ++ ++ + D T
Sbjct: 21 EMIADRGYDLTEEELNISLDDFKVKYCD--SDGRPQRKKMTFSAKPSQSMIDRNTDTQTG 78
Query: 54 QM--------FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMA 105
Q+ ++ F EP IGIK ++ + + E H + + +T SA + + +A
Sbjct: 79 QLIPNSCGTIWIEFSPEPSIGIKQMRVFAHTIVEHNFHTGVFITMAPLTSSAAKIIPTVA 138
Query: 106 PKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P ++E FLE +LL+NIT HELVP+H++++ E+K++LL RY
Sbjct: 139 PS-VIECFLEQDLLVNITRHELVPQHVLMSREDKRKLLERY 178
>gi|452840713|gb|EME42651.1| hypothetical protein DOTSEDRAFT_73472 [Dothistroma septosporum
NZE10]
Length = 228
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 31/168 (18%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD--------------KPSE---------KRPAR 38
Q+C DRGY +T++E + +LD F++Q+ D +PSE +RP +
Sbjct: 22 QMCADRGYELTEEECNISLDDFRQQYADETGAPQRTRMAFTARPSENMQKKYMPLQRPGQ 81
Query: 39 SELIVLVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAK 98
SE + + V F ++ IGIK IK + Q + E+ + I V TP+A
Sbjct: 82 SE-------GEPAIGTIHVEFSNDANIGIKHIKQFAQVLSEKNYYTGIFVSAVAPTPAAM 134
Query: 99 QSLVDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ + + P ++E F E +LL+NI++HELVP+H++L+PEEK+ LL RY
Sbjct: 135 KIIPSILPT-VMEIFREEDLLVNISKHELVPKHVLLSPEEKKGLLERY 181
>gi|358054002|dbj|GAA99801.1| hypothetical protein E5Q_06504 [Mixia osmundae IAM 14324]
Length = 298
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 4/149 (2%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPA----RSELIVLVAHNDDPTDQMFV 57
+LC DRGY +++ E++ +L +F E + R A S + + + Q++V
Sbjct: 21 ELCRDRGYTMSEQEINMSLQKFTESYTMNGHLDRTALNFHASRHVPVAGREETEVQQIYV 80
Query: 58 FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESE 117
FF +E +GIK ++ + + + +H I++ + +TP A ++L E ESE
Sbjct: 81 FFAEERSLGIKPVREFLTVLLDRNLHSGILIYKQSITPPALRALAQAGQHTTAEALSESE 140
Query: 118 LLINITEHELVPEHIVLTPEEKQELLTRY 146
LL+NIT+H LVP+H VL+P +K ELL +Y
Sbjct: 141 LLVNITQHTLVPKHEVLSPMDKAELLKKY 169
>gi|167379694|ref|XP_001735242.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Entamoeba dispar SAW760]
gi|165902841|gb|EDR28561.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Entamoeba dispar SAW760]
Length = 204
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 9/149 (6%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQF---GDKPSEKRPARSELIVLVAHNDDPTDQMFV 57
+++ DRGY+ ++++ + TL+ FKE+F G+ K EL + V +D TD + V
Sbjct: 15 LEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHK-----ELTIKVVKENDATDGIIV 69
Query: 58 FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESE 117
FF + + + Y ++ E + RAIIV + ++ KQ +++ + E LE E
Sbjct: 70 FFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQ-MMEQPREVKWEALLEDE 128
Query: 118 LLINITEHELVPEHIVLTPEEKQELLTRY 146
L++N+T H LVP+HI+L+PEEKQELL +Y
Sbjct: 129 LIVNVTHHVLVPQHILLSPEEKQELLKKY 157
>gi|317137040|ref|XP_003190012.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Aspergillus oryzae RIB40]
Length = 235
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 18/162 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD--------------KPSEKRPARSELIVLVAH 47
++ DRGY VT++E+ +L++FK+++ D +P+E + I A+
Sbjct: 28 EMLQDRGYEVTEEEVQISLEEFKQKYSDPLGYPDRNKMKVQARPTEAMQHKYTAIKTNAN 87
Query: 48 NDDPTDQMFV---FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
D D + F PD +G K ++ + + E H + + QT ++PSA + L+
Sbjct: 88 PDPQPDCGIIYVEFCPDSTGVGTKQVRAFNHVVDENNFHTGVFITQTPISPSAVR-LLSG 146
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P I E+F E +LL+NIT HELVP+H++L+PEEK +LL RY
Sbjct: 147 VPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKAKLLARY 188
>gi|67469583|ref|XP_650770.1| RNA polymerase subunit Rpb5 [Entamoeba histolytica HM-1:IMSS]
gi|56467420|gb|EAL45380.1| RNA polymerase subunit Rpb5, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407044881|gb|EKE42883.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Entamoeba nuttalli P19]
gi|449705666|gb|EMD45670.1| RNA polymerase subunit Rpb5, putative [Entamoeba histolytica KU27]
Length = 204
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 9/149 (6%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQF---GDKPSEKRPARSELIVLVAHNDDPTDQMFV 57
+++ DRGY+ ++++ + TL+ FKE+F G+ K EL + V +D TD + V
Sbjct: 15 LEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHK-----ELTIKVVKENDATDGIIV 69
Query: 58 FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESE 117
FF + + + Y ++ E + RAIIV + ++ KQ +++ + E LE E
Sbjct: 70 FFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQ-MMEQPREVKWEALLEDE 128
Query: 118 LLINITEHELVPEHIVLTPEEKQELLTRY 146
L++N+T H LVP+HI+L+PEEKQELL +Y
Sbjct: 129 LIVNVTHHILVPQHILLSPEEKQELLKKY 157
>gi|167517495|ref|XP_001743088.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778187|gb|EDQ91802.1| predicted protein [Monosiga brevicollis MX1]
Length = 176
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 39/145 (26%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
QLC DRGY V ++L T + F E+FG +P ++P RS+L +V DPTDQ+ V+F +
Sbjct: 23 QLCQDRGYDVKSEDLLLTREGFAERFGSQPLNEQPRRSDLDFVVQRASDPTDQLGVYFAN 82
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
+PK+GI ++ ++F E EL++N
Sbjct: 83 DPKVGIAVVR---------------------------------------DFFEEKELVVN 103
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
+T+HELVP+H + TPEEK LL RY
Sbjct: 104 VTKHELVPKHFLQTPEEKAALLERY 128
>gi|168036467|ref|XP_001770728.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677946|gb|EDQ64410.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 211
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 89/149 (59%), Gaps = 12/149 (8%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ D Y+V +EL T +QF E++ + P ++ +L++L + + + P
Sbjct: 21 LEMMRDLDYVVADNELTLTNEQFCEKYREDPKQE-----DLMILKPKSSNNAEH----GP 71
Query: 61 D---EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESE 117
+ ++G+KTIKT +RM+ E + RA+ VVQ +TP +KQ + A KY LE FLE E
Sbjct: 72 KTGGKGRVGLKTIKTCKKRMKRENVPRAVFVVQQHITPLSKQYISRKAQKYHLEVFLEPE 131
Query: 118 LLINITEHELVPEHIVLTPEEKQELLTRY 146
L+NITE LVP H +LTPEEK LL RY
Sbjct: 132 FLVNITECYLVPLHEILTPEEKNTLLERY 160
>gi|260943051|ref|XP_002615824.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
gi|238851114|gb|EEQ40578.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
Length = 287
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 84/151 (55%), Gaps = 18/151 (11%)
Query: 6 DRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPT----------DQM 55
D GY +T +E++ TLD+FK + +R L+ PT +
Sbjct: 98 DIGYYITDEEINMTLDEFKAKICPMGEAQRK-------LMCFQAQPTPEAAEKFPEMGSL 150
Query: 56 FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLE 115
+V F DE +GIKT++ +C + E+ I + QT +TPSA + + ++P I E F E
Sbjct: 151 WVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQTSITPSANKLIPTVSPATI-EVFQE 209
Query: 116 SELLINITEHELVPEHIVLTPEEKQELLTRY 146
S+L++NIT HELVP+HI L+ EK+ELL RY
Sbjct: 210 SDLVVNITHHELVPKHIRLSKPEKKELLDRY 240
>gi|401882166|gb|EJT46437.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 2479]
gi|406701349|gb|EKD04497.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 195
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY V E++ + D FKE +G S R + H+ D D+++VFF
Sbjct: 21 EMIRDRGYEVADYEINMSFDDFKETYGGGGS---VDRGRMAFHANHSRDSRDRIYVFFCA 77
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E + T K++ + R +IV +T A ++ +M +Y LE F E++LL+N
Sbjct: 78 EEAVSKATYKSFVTSLDAVGAKRGLIVHGGKLTSGAAKTQNEMQSEYHLEDFKEADLLVN 137
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H LVP+H ++ PEEK L+ RY
Sbjct: 138 ITRHFLVPKHTIMEPEEKSALIKRY 162
>gi|403332978|gb|EJY65550.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Oxytricha
trifallax]
Length = 215
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 87/159 (54%), Gaps = 20/159 (12%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVL-------------VAH 47
+Q+ DRGY+V+ +L QT+++FK F + LIV VA
Sbjct: 17 LQMLKDRGYIVSDKKLKQTIEEFKATFNNTRDS-----LNLIVTKRQQVDPNDPNSQVAQ 71
Query: 48 NDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPK 107
N + ++ VFFPD K+ + +K +M E AI++++ G T +++ L ++ P
Sbjct: 72 NSEEQQKLIVFFPDVEKLNMAALKQIAIKMLEVNCFNAIVIIK-GATQISRRELDELKPC 130
Query: 108 YILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
I E FL+ ELL+NITEHELVP H VL+ + K ELL +Y
Sbjct: 131 EI-ECFLQQELLVNITEHELVPRHEVLSDKAKHELLKKY 168
>gi|67516941|ref|XP_658356.1| hypothetical protein AN0752.2 [Aspergillus nidulans FGSC A4]
gi|40746238|gb|EAA65394.1| hypothetical protein AN0752.2 [Aspergillus nidulans FGSC A4]
gi|259488970|tpe|CBF88854.1| TPA: RNA polymerase subunit (AFU_orthologue; AFUA_1G14110)
[Aspergillus nidulans FGSC A4]
Length = 235
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 24/166 (14%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQF-GDKPSEKRPARSELIVLVA------------- 46
++ DRGY VT++E+ LD+FK ++ G+K P+R +L +
Sbjct: 27 FEMLQDRGYEVTEEEVKIDLDEFKRKYVGEKGY---PSREKLKIQARPTEAMKAKYTPLP 83
Query: 47 --HNDDP---TDQMFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQS 100
N DP +++ F PD+ IG K ++T+ + E H I + +T ++PSA +
Sbjct: 84 TPSNRDPQPDCGTIYIEFCPDDSGIGTKQVRTFNHTVDEGNFHTGIFITKTPISPSAVR- 142
Query: 101 LVDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
L+ P I E+F E +LL+NIT HELVP+H++L+PEEK +LL RY
Sbjct: 143 LLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKSKLLQRY 188
>gi|449299839|gb|EMC95852.1| hypothetical protein BAUCODRAFT_34618, partial [Baudoinia
compniacensis UAMH 10762]
Length = 171
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 81/151 (53%), Gaps = 17/151 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVA-------------HN 48
Q+C+DRGY +T+DE + + D FK Q+ D+ + R N
Sbjct: 22 QMCYDRGYELTEDECNISFDDFKTQYCDESGAPQRTRMNFTARPTPEMNKKYSPLPKPSN 81
Query: 49 DDPT---DQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMA 105
DP +FV F +P IGIK +KT+ Q + E+ +H I V Q T SA + + +A
Sbjct: 82 PDPAPDIGTIFVQFNSDPNIGIKHLKTFAQLLSEKNLHTGIYVSQAAPTASALKIIPTIA 141
Query: 106 PKYILEYFLESELLINITEHELVPEHIVLTP 136
P ++E F E +LL+NI+ HELVP+H +L+P
Sbjct: 142 P-LVMEIFREEDLLVNISRHELVPKHTLLSP 171
>gi|330933135|ref|XP_003304060.1| hypothetical protein PTT_16482 [Pyrenophora teres f. teres 0-1]
gi|311319571|gb|EFQ87830.1| hypothetical protein PTT_16482 [Pyrenophora teres f. teres 0-1]
Length = 235
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 94/169 (55%), Gaps = 27/169 (15%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELI--------VLVAHNDDPTD 53
++ +DRGY+V +++++ +LDQF ++ + E P RS L +L + D PT
Sbjct: 23 EMMNDRGYMVLEEDMNMSLDQFSRKYAREDGE--PDRSRLNFSCQPSEEMLAKYTDAPTK 80
Query: 54 Q----------MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQ---- 99
+ ++V F + +G+K ++ Y + + H I++ MT A +
Sbjct: 81 KVPNPTPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMITVKPMTGMAIRLLRG 140
Query: 100 --SLVDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
SL D PK +E F+E +LL+NIT+HELVP+H++L+ EEKQ+LL RY
Sbjct: 141 ATSLSD-GPKGGVEVFIEQDLLVNITKHELVPKHVLLSDEEKQQLLQRY 188
>gi|189192274|ref|XP_001932476.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187974082|gb|EDU41581.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 235
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 94/169 (55%), Gaps = 27/169 (15%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELI--------VLVAHNDDPTD 53
++ +DRGY+V +++++ +LDQF ++ + E P RS L +L + D PT
Sbjct: 23 EMMNDRGYMVLEEDMNMSLDQFARKYAREDGE--PDRSRLNFSCQPSEEMLAKYTDAPTK 80
Query: 54 Q----------MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQ---- 99
+ ++V F + +G+K ++ Y + + H I++ MT A +
Sbjct: 81 KVPNPLPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMITVKPMTGMAIRLLRG 140
Query: 100 --SLVDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
SL D PK +E F+E +LL+NIT+HELVP+H++L+ EEKQ+LL RY
Sbjct: 141 ATSLSD-GPKGGVEVFIEQDLLVNITKHELVPKHVLLSDEEKQQLLQRY 188
>gi|162606200|ref|XP_001713615.1| RNA polymerase I, II and III 24.3 kDa subunit [Guillardia theta]
gi|13794535|gb|AAK39910.1|AF165818_118 RNA polymerase I, II and III 24.3 kDa subunit [Guillardia theta]
Length = 214
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 92/153 (60%), Gaps = 10/153 (6%)
Query: 1 MQLCHDRGYLV--TQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVF 58
+Q+ DRGY+V ++D+L+ + F+E + + R L + D+P +++ +
Sbjct: 18 LQMIRDRGYVVFDSKDDLNISRSSFEEFYMKNHA---ICRKSLEIKRPRWDNPENRILIV 74
Query: 59 F----PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM-APKYILEYF 113
F D+ IG+K+I+ +C+R++ E R ++++ +TP AKQ++ + + ++EYF
Sbjct: 75 FVEGEKDKMNIGVKSIRLFCERIKNEGFSRVLMILNGKLTPHAKQAVSSINSNNDLIEYF 134
Query: 114 LESELLINITEHELVPEHIVLTPEEKQELLTRY 146
E+EL++NIT H LVP+H +L+ E + LL RY
Sbjct: 135 SENELIVNITHHMLVPKHEILSKNESKSLLERY 167
>gi|451853318|gb|EMD66612.1| hypothetical protein COCSADRAFT_35119 [Cochliobolus sativus ND90Pr]
Length = 234
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 92/168 (54%), Gaps = 25/168 (14%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELI--------VLVAHNDDPTD 53
++ +DRGY+V +D++ +L++F ++ + E P RS L +L + D PT
Sbjct: 22 EMMNDRGYMVVEDDMTMSLEEFSRRYAREDGE--PDRSRLNFSCQPSEEMLAKYTDAPTK 79
Query: 54 Q----------MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSL-- 101
+ ++V F + +G+K ++ Y + + H I+V MT A + L
Sbjct: 80 KNPNPTPSIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMVTVKAMTGMAIRLLRG 139
Query: 102 ---VDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ PK +E F+E +LL+NIT+HELVP+H++L+ +EKQ+LL RY
Sbjct: 140 ATSITDGPKGGVEVFVEQDLLVNITKHELVPKHVLLSDQEKQQLLQRY 187
>gi|357155279|ref|XP_003577067.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 270
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 88/146 (60%), Gaps = 6/146 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY V + EL +TL +F+ + +KP +R + S +D FVF P
Sbjct: 84 LEMLRDRGYSVPEPELARTLTEFRAWWAEKPEMRRLSFSATFA----SDHSNKVQFVFCP 139
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+P + I TI+ +++EE + R I+++Q +T A+ + ++ P + ++ F +ELL+
Sbjct: 140 PKP-VNITTIREVYSQIEEENLSRLILILQGDITSKARDCIKEIFP-FKVDIFQVTELLV 197
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI++HEL P+H VLT EEK ELL +Y
Sbjct: 198 NISKHELKPKHEVLTAEEKAELLKKY 223
>gi|145230680|ref|XP_001389604.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Aspergillus niger CBS 513.88]
gi|134055723|emb|CAK44096.1| unnamed protein product [Aspergillus niger]
gi|350638607|gb|EHA26963.1| hypothetical protein ASPNIDRAFT_205564 [Aspergillus niger ATCC
1015]
gi|358370671|dbj|GAA87281.1| RNA polymerase subunit [Aspergillus kawachii IFO 4308]
Length = 235
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 24/165 (14%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD--------------KPSEKRPARSELIVLVAH 47
++ DRGY VT+DE+ L +FK+++ D +P+E A+ +
Sbjct: 28 EMLLDRGYEVTEDEVQMPLHEFKQKYSDPLGYPDRNKMKISARPTEAMQAK---YTPLPS 84
Query: 48 NDDPTDQ-----MFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSL 101
+P Q ++V F PD +G K ++T+ + E H + + QT ++PSA + L
Sbjct: 85 KSNPNPQPDCGTIYVEFCPDSTGVGTKQVRTFNHFVDENNFHTGVFITQTPISPSAVRLL 144
Query: 102 VDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
M P I E+F E +LL+NIT HELVP+H++L+P+EK LL RY
Sbjct: 145 SSM-PGRICEHFQEQDLLVNITRHELVPKHVLLSPDEKARLLERY 188
>gi|440634485|gb|ELR04404.1| hypothetical protein GMDG_01480 [Geomyces destructans 20631-21]
Length = 236
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 91/161 (56%), Gaps = 16/161 (9%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD-------------KPSEKRPARSELIVLVAHN 48
Q+ +DRGY + +DEL +L +FK +F + +PS + AR A+
Sbjct: 29 QMVNDRGYELNEDELSISLAEFKHRFTNDGVPDRKKMIFTARPSVEMVARYSTPATAANP 88
Query: 49 DDP---TDQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMA 105
+ P +++ F + +GIK ++++ Q + + H I+V +TP+A + + +A
Sbjct: 89 NPPKADVGTIYIEFLADTNVGIKQMRSFAQVLSQGNFHTGILVTHVHITPAAMKIVPAVA 148
Query: 106 PKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ +E FLE +LL+NIT HELVP+H++L+ EE+ +LL RY
Sbjct: 149 SETRIECFLEQDLLVNITHHELVPKHVLLSKEERSKLLQRY 189
>gi|392576849|gb|EIW69979.1| hypothetical protein TREMEDRAFT_29545 [Tremella mesenterica DSM
1558]
Length = 218
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 88/153 (57%), Gaps = 10/153 (6%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIV--------LVAHNDDPTD 53
++ DRGYLV + E++Q+ + FK+ G S + ELIV H++ D
Sbjct: 21 EMVRDRGYLVAEYEIEQSFEDFKDAHG--SSGVVEMKKELIVNSRNNMHFTCDHSERTGD 78
Query: 54 QMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYF 113
++ V+F E + +IK + +M+ + ++ I++ M +A +++++M +Y LE F
Sbjct: 79 RLLVWFCPERNVPKSSIKIFLGQMEHRSANKGILIHPDKMGSAANKAMMEMQAEYHLESF 138
Query: 114 LESELLINITEHELVPEHIVLTPEEKQELLTRY 146
E++LL+NIT H LVP+H ++ PEEK L+ RY
Sbjct: 139 SEADLLVNITRHFLVPKHTIMRPEEKAALIKRY 171
>gi|320590726|gb|EFX03169.1| RNA polymerase subunit [Grosmannia clavigera kw1407]
Length = 237
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 16/161 (9%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQF------GDKPSEKRPAR-SELIV-------LVAH 47
++C DRGY + +DE+ + D F QF D+ + AR SE ++ A
Sbjct: 30 EMCQDRGYELAEDEVKISFDDFVRQFSLPDGTADRGKMQFSARPSESMIKKFTPPPTAAR 89
Query: 48 NDDPTD--QMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMA 105
D PT+ ++V F E +IG+K IK + Q E + I+V Q ++ A++ +
Sbjct: 90 PDPPTECGTIWVEFMTEQQIGVKEIKRFLQHCSENSFRAGIMVTQGALSAQARKVINATM 149
Query: 106 PKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+E F++ +LL+NIT HELVP H++L+ EEK LL+RY
Sbjct: 150 MYTQIECFMQDDLLVNITHHELVPTHVLLSKEEKTALLSRY 190
>gi|452004738|gb|EMD97194.1| hypothetical protein COCHEDRAFT_1163800 [Cochliobolus
heterostrophus C5]
Length = 234
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 25/168 (14%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELI--------VLVAHNDDPTD 53
++ +DRGY+V +D++ +L++F ++ + E P RS L ++ + D PT
Sbjct: 22 EMMNDRGYMVVEDDMTMSLEEFSRRYAREDGE--PDRSRLNFSCQPSEEMIAKYTDAPTK 79
Query: 54 Q----------MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSL-- 101
+ ++V F + +G+K ++ Y + + H I+V MT A + L
Sbjct: 80 KNPNPTPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMVTVKAMTGMAIRLLRG 139
Query: 102 ---VDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ PK +E F+E +LL+NIT+HELVP+H++L+ +EKQ+LL RY
Sbjct: 140 ATSITDGPKGGVEVFVEQDLLVNITKHELVPKHVLLSDQEKQQLLQRY 187
>gi|407928431|gb|EKG21288.1| RNA polymerase subunit H/Rpb5 [Macrophomina phaseolina MS6]
Length = 227
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 89/163 (54%), Gaps = 25/163 (15%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQM------ 55
++ DRGY++++ E TLD+F+ +FGD S R +L A + +P+D+M
Sbjct: 25 EMIADRGYIMSESEYKITLDEFRAKFGD--SSGYVDRKQL----AFSANPSDEMKQKHFN 78
Query: 56 ------------FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVD 103
+V F + IG+K ++ + + E I + +T +A++ +
Sbjct: 79 PRKPKESEVGNIWVEFNGDQNIGVKQLRNFGHTLNEHNFSSGIFITAVPVTGAAQKIIPS 138
Query: 104 MAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ P I+E F+E +LL+NIT+HELVP+H++L+ EEK LL RY
Sbjct: 139 LHP-LIMEIFMEQDLLVNITQHELVPKHVLLSAEEKAALLARY 180
>gi|212533613|ref|XP_002146963.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
gi|210072327|gb|EEA26416.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
Length = 236
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 19/163 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDK---PSEKR------PARSELIVLVAHNDDPT 52
++ DRGY ++++EL L F +F D PS +R P+ + PT
Sbjct: 28 EMLRDRGYEISEEELKIDLQDFTNKFSDSNGFPSRERMTIAAIPSEAMKAKYTPLKKRPT 87
Query: 53 D--------QMFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVD 103
D Q+FV F D +G K ++ + + E H I + +T ++PSA + L++
Sbjct: 88 DPDPVPDCGQIFVQFCEDTTGVGAKQVRQFNHLVDEGNYHSGIFITRTAISPSAVR-LLN 146
Query: 104 MAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
A +I E+F ES+LL+NIT HELVP+H++L+ EEK LL RY
Sbjct: 147 SAIGHICEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERY 189
>gi|119495104|ref|XP_001264345.1| RNA polymerase subunit [Neosartorya fischeri NRRL 181]
gi|119412507|gb|EAW22448.1| RNA polymerase subunit [Neosartorya fischeri NRRL 181]
Length = 234
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 18/163 (11%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGD------KPSEKRPARSELIVLVAH------- 47
++ DRGY VT++E+ LD+F++++ D + K AR + +
Sbjct: 26 FEMLADRGYEVTEEEIQIPLDEFRQKYADPVGFPDRTKMKISARPTAAMQAKYTPLPTPA 85
Query: 48 NDDP---TDQMFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVD 103
N DP ++V F D +G K ++ + + E H + + QT ++PSA + L+
Sbjct: 86 NPDPQPDCGTIYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFITQTPISPSAVR-LLS 144
Query: 104 MAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P I E+F E +LL+NIT HELVP+H++L+PEEK+ LL RY
Sbjct: 145 GIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRY 187
>gi|15242916|ref|NP_200606.1| RNA polymerase II fifth largest subunit, C [Arabidopsis thaliana]
gi|9758367|dbj|BAB08868.1| RNA polymerase I, II and III 24.3 kDa subunit-like protein
[Arabidopsis thaliana]
gi|332009598|gb|AED96981.1| RNA polymerase II fifth largest subunit, C [Arabidopsis thaliana]
Length = 210
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 88/147 (59%), Gaps = 3/147 (2%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ DRGY + + +L+ ++F ++F + + + L V +P D+++VF+P
Sbjct: 19 LQMLRDRGYTIEESDLNLKREEFVQRFC--KTMNKVNKEALFVSANKGPNPADKIYVFYP 76
Query: 61 DEPKIGIKTIKT-YCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
+ PK+G+ IK +M+++ +HR I+VV +T A+ ++ ++ +E F E+EL+
Sbjct: 77 EGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKMLTIEVFEEAELV 136
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
NITEH+LV ++ VL + K++LL Y
Sbjct: 137 TNITEHKLVNKYYVLDDQAKKKLLNTY 163
>gi|296424747|ref|XP_002841908.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638159|emb|CAZ86099.1| unnamed protein product [Tuber melanosporum]
Length = 220
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 90/158 (56%), Gaps = 16/158 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELI--------VLVAHNDDPTD 53
++ DRGY ++++E+ TL++F+ Q+ D E RP R L ++ H P
Sbjct: 19 EMAKDRGYEISEEEITITLEEFRHQYCD--GEGRPIRKNLTFKANPSPSMIKQHAPAPNQ 76
Query: 54 -----QMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKY 108
++V F E IGIK ++ + + E H I + + TP+A + + + P
Sbjct: 77 PATVGTLWVEFSAESNIGIKHMRAFAHTINSENFHTGIFICSSHPTPAAMKIVPTVLPS- 135
Query: 109 ILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
++E FLES+LL+NIT+HELVP HI+L+ EEK++LL RY
Sbjct: 136 VIEVFLESDLLVNITKHELVPRHILLSREEKKKLLERY 173
>gi|154276568|ref|XP_001539129.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Ajellomyces
capsulatus NAm1]
gi|150414202|gb|EDN09567.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Ajellomyces
capsulatus NAm1]
Length = 236
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 18/162 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD------KPSEKRPARSELIVLVAHNDDPTDQ- 54
++ DRGY VT++E+ +LD+F+ ++ D + K AR ++ + PT
Sbjct: 29 EMLADRGYEVTEEEIKISLDEFRTRYSDALGFPDRNKMKISARPSQTMMDKYTPLPTASK 88
Query: 55 ---------MFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
++V F D +G K I+ + + E+ H I V QT ++PSA + L +
Sbjct: 89 PNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTGIFVSQTPISPSAMRVL-NS 147
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P E+F E ELL+NIT HELVP+H++L+ EEK+ LL RY
Sbjct: 148 IPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189
>gi|387594524|gb|EIJ89548.1| hypothetical protein NEQG_00318 [Nematocida parisii ERTm3]
gi|387596634|gb|EIJ94255.1| hypothetical protein NEPG_00922 [Nematocida parisii ERTm1]
Length = 208
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 79/148 (53%), Gaps = 14/148 (9%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQF------GDKPSEKRPARSELIVLVAHNDDPTDQM 55
Q+ RGY V++ +L+ LD FK + G K S L +L H P Q+
Sbjct: 19 QMMKCRGYTVSEADLEMDLDLFKTSYPALINTGSKHS--------LSMLFQHTTMPEKQL 70
Query: 56 FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLE 115
FVFFPD K IK Y + ++ IH IIV + + + ++L + +Y LE F
Sbjct: 71 FVFFPDNAYFKAKDIKLYTSTLGKQNIHNGIIVCKETLKAHSLKALDESRKEYDLELFYI 130
Query: 116 SELLINITEHELVPEHIVLTPEEKQELL 143
ELL NIT+H+ VP+HI+LT EEK+ +L
Sbjct: 131 RELLFNITKHKDVPKHILLTEEEKKNVL 158
>gi|242069947|ref|XP_002450250.1| hypothetical protein SORBIDRAFT_05g002600 [Sorghum bicolor]
gi|241936093|gb|EES09238.1| hypothetical protein SORBIDRAFT_05g002600 [Sorghum bicolor]
Length = 263
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 89/147 (60%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQM-FVFF 59
+++ DRGY V +DEL +TL +F+ + DKP +R A S + DP+ ++ VF
Sbjct: 77 LEMLRDRGYAVPEDELARTLPEFRAWWEDKPELERLAFSTTLA-----SDPSSKVKVVFC 131
Query: 60 PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
P EP + I I+ +++E + R I+++Q + A++++ ++ P Y ++ F +ELL
Sbjct: 132 PPEP-VKIAAIRVVYTGVKDENLSRLILILQGRIMSKAREAIKEIFP-YKVDTFQITELL 189
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P+H VLT EEK +LL Y
Sbjct: 190 VNITKHALKPKHQVLTAEEKAKLLKEY 216
>gi|425770508|gb|EKV08978.1| hypothetical protein PDIP_66930 [Penicillium digitatum Pd1]
gi|425771874|gb|EKV10306.1| hypothetical protein PDIG_57390 [Penicillium digitatum PHI26]
Length = 234
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 18/162 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD---------KPSEKRPARSELIVLVA----HN 48
+L DRGY V+ +EL L+ F+ ++ D + RP + + A N
Sbjct: 27 ELLADRGYEVSDNELVLPLEDFRAKYADPLGYPDRTKMKIQARPTETMKLKYTALPSKAN 86
Query: 49 DDP---TDQMFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
+P ++V F PD +G K ++ + + E H I + QT ++PSA + L+
Sbjct: 87 PNPQPDCGTIYVDFCPDSSGVGTKQVRAFNHLVDENNFHTGIFITQTPISPSAVR-LLSG 145
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P I E+F E +LL+NIT HELVP+H++L+PEEK +LL RY
Sbjct: 146 VPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKGKLLERY 187
>gi|452981679|gb|EME81439.1| hypothetical protein MYCFIDRAFT_70882 [Pseudocercospora fijiensis
CIRAD86]
Length = 227
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 29/167 (17%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMF----- 56
Q+C DRGY +T +E + +L++F++Q+ D+ P+R V +A P+D M
Sbjct: 21 QMCSDRGYELTDEECNISLEEFRQQYADESGA--PSR----VKMAFTARPSDAMIKKYTP 74
Query: 57 -----------------VFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQ 99
V F ++ IGIK +K + + ++ + I V Q T +A +
Sbjct: 75 IQRPGQDEKPPEIGTIHVEFSNDASIGIKQLKQFASNLADKNYYTGIYVSQVQPTSAALK 134
Query: 100 SLVDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ + P I+E F E +LL+NI+ HELVP+HI+L+ EEK+ LL RY
Sbjct: 135 IIPSVHP-LIMEIFKEDDLLVNISRHELVPKHILLSQEEKRGLLERY 180
>gi|255941598|ref|XP_002561568.1| Pc16g12690 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586191|emb|CAP93939.1| Pc16g12690 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 234
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 18/162 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD---------KPSEKRPARSELIVLVA----HN 48
+L DRGY V+ +EL L+ F+ ++ D + RP + + A N
Sbjct: 27 ELLADRGYEVSDNELLLPLEDFRAKYSDPLGYPDRTKMKIQARPTETMKMKYTALPSKAN 86
Query: 49 DDP---TDQMFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
+P ++V F PD +G K ++ + + E H I + QT ++PSA + L+
Sbjct: 87 PNPQPDCGTIYVDFCPDSSGVGTKQVRAFNHLVDENNFHTGIFITQTPISPSAVR-LLSG 145
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P I E+F E +LL+NIT HELVP+H++L+PEEK +LL RY
Sbjct: 146 VPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKAKLLERY 187
>gi|68489026|ref|XP_711626.1| hypothetical protein CaO19.13696 [Candida albicans SC5314]
gi|68489167|ref|XP_711558.1| hypothetical protein CaO19.6340 [Candida albicans SC5314]
gi|46432871|gb|EAK92334.1| hypothetical protein CaO19.6340 [Candida albicans SC5314]
gi|46432944|gb|EAK92404.1| hypothetical protein CaO19.13696 [Candida albicans SC5314]
Length = 179
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 9/134 (6%)
Query: 19 TLDQFKEQFGDKPSEKRPARSELIVLVAHNDDP------TDQMFVFFPDEPKIGIKTIKT 72
TL++F+ + D S P R ++ + T ++V F DE +GIKT++
Sbjct: 2 TLEEFRSKICD--SMGTPQRKQMCFQATPTAETLEKFPETGSLWVEFCDEASVGIKTMRN 59
Query: 73 YCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELVPEHI 132
+C + E+ I + Q MTPSA + + ++P I E F E++L++NIT HELVP+H+
Sbjct: 60 FCIHITEKNFSTGIFIYQNSMTPSANKLIPTVSPATI-EIFQENDLIVNITHHELVPKHL 118
Query: 133 VLTPEEKQELLTRY 146
L EEK+ELLTRY
Sbjct: 119 KLNREEKKELLTRY 132
>gi|121701167|ref|XP_001268848.1| RNA polymerase subunit [Aspergillus clavatus NRRL 1]
gi|119396991|gb|EAW07422.1| RNA polymerase subunit [Aspergillus clavatus NRRL 1]
Length = 234
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 18/163 (11%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGD------KPSEKRPARSELIVLVAH------- 47
++ DRGY VT++E+ L++F+ ++ D + K AR + +
Sbjct: 26 FEMLADRGYEVTEEEIQIPLEEFRHKYSDAVGYPDRTKMKISARPTAAMQAKYTPLPTPA 85
Query: 48 NDDP---TDQMFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVD 103
N DP ++V F D +G K ++ + + E H + + QT ++PSA + L+
Sbjct: 86 NPDPQPDCGTIYVEFCADSSGVGTKQVRAFNHFVDENNFHTGVFITQTPISPSAVR-LLS 144
Query: 104 MAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P I E+F E +LL+NIT HELVP+H++L+PEEK+ LL RY
Sbjct: 145 GIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRY 187
>gi|225560287|gb|EEH08569.1| RNA polymerase subunit [Ajellomyces capsulatus G186AR]
gi|240279038|gb|EER42544.1| RNA polymerase subunit [Ajellomyces capsulatus H143]
gi|325090297|gb|EGC43607.1| RNA polymerase subunit [Ajellomyces capsulatus H88]
Length = 236
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 18/162 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD------KPSEKRPARSELIVLVAHNDDPTDQ- 54
++ DRGY VT++E+ LD+F+ ++ D + K AR ++ + PT
Sbjct: 29 EMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISARPSQTMMDKYTPLPTASK 88
Query: 55 ---------MFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
++V F D +G K I+ + + E+ H I V QT ++PSA + L +
Sbjct: 89 PNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTGIFVSQTPISPSAMRVL-NS 147
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P E+F E ELL+NIT HELVP+H++L+ EEK+ LL RY
Sbjct: 148 IPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189
>gi|326480400|gb|EGE04410.1| DNA-directed RNA polymerase I [Trichophyton equinum CBS 127.97]
Length = 276
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 90/162 (55%), Gaps = 18/162 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD------KPSEKRPARSELIVLVAHNDDPT--- 52
+L DRGY VT++E+ +L FK+++ D + + AR ++ + PT
Sbjct: 29 ELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISARPSQAMMERYTPLPTPSK 88
Query: 53 -------DQMFVFFPDEPK-IGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
+ V F E + +G K I+ + Q + ++ H I + Q+ ++PSA + L+
Sbjct: 89 PNTVPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFITQSPISPSAIR-LLTA 147
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P E+FLE ELL+NIT HELVP+HI+L+ EEK++LL RY
Sbjct: 148 IPGRFCEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRY 189
>gi|50550027|ref|XP_502486.1| YALI0D06457p [Yarrowia lipolytica]
gi|54036340|sp|Q6CA26.1|RPAB1_YARLI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49648354|emb|CAG80674.1| YALI0D06457p [Yarrowia lipolytica CLIB122]
Length = 212
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 87/151 (57%), Gaps = 9/151 (5%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------M 55
+L DRGY +T E++ + DQF + D P K P + ++ + + + + ++ +
Sbjct: 18 ELVKDRGYTITDKEVNLSFDQFVSEMCD-PMGK-PIKKKMCFMASPSPEAIEKFPEMGNI 75
Query: 56 FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLE 115
+V F +E + +KT++ +C + E I+V + MTPSA + + +AP I + F E
Sbjct: 76 WVEFCEEASVTVKTMRNFCIHISENKFATGILVYENNMTPSANRLIPSVAPATI-DTFQE 134
Query: 116 SELLINITEHELVPEHIVLTPEEKQELLTRY 146
++LL+NIT+H LVP HI L+ EK+ LL RY
Sbjct: 135 TDLLVNITKHVLVPTHIKLSGAEKKFLLERY 165
>gi|261200923|ref|XP_002626862.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239593934|gb|EEQ76515.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239607191|gb|EEQ84178.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327351148|gb|EGE80005.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 236
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 88/162 (54%), Gaps = 18/162 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD------KPSEKRPARSELIVLVAHNDDPTD-- 53
++ DRGY VT++E+ LD+F+ ++ D + K AR ++ + PT
Sbjct: 29 EMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISARPSQAMMDRYTPLPTTLK 88
Query: 54 --------QMFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
++V F PD +G K ++ + + E+ H I + QT ++PSA + L +
Sbjct: 89 PNPVPECGTIYVEFCPDIHSVGTKQVRAFNHFIDEQNYHTGIFISQTPISPSAIRVL-NS 147
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P E+F E ELL+NIT HELVP+H++L+ EEK+ LL RY
Sbjct: 148 IPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189
>gi|378727418|gb|EHY53877.1| DNA-directed RNA polymerase II subunit E [Exophiala dermatitidis
NIH/UT8656]
Length = 238
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 28/169 (16%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQM----- 55
+++ DRGY + QDEL T D F+ +FGD PS R L+ PT++M
Sbjct: 28 LEMLVDRGYAIAQDELAITRDDFQRKFGD-PSTGHVERR----LMKLQAVPTEEMIKRDT 82
Query: 56 -----------------FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAK 98
+V F E IGIK ++ + Q + I + + +T +A
Sbjct: 83 PRPTKSNPNPQTTAGTIWVEFSPETTIGIKHLRAFAQHLDANKFTTGIFITISPVTAAAL 142
Query: 99 QSLVDMAPKYIL-EYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
++ +A + I E+F ES+LL+NIT HELVP+H++L+ EEK+ LL RY
Sbjct: 143 RAFEPLAERGITAEWFQESDLLVNITRHELVPKHVLLSAEEKKVLLDRY 191
>gi|398396120|ref|XP_003851518.1| hypothetical protein MYCGRDRAFT_43980, partial [Zymoseptoria
tritici IPO323]
gi|339471398|gb|EGP86494.1| hypothetical protein MYCGRDRAFT_43980 [Zymoseptoria tritici IPO323]
Length = 218
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 29/167 (17%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMF----- 56
Q+C DRGY +T+ E + +L++F+ + D+ P R+++ A P+ M
Sbjct: 12 QMCADRGYELTEAECNISLEEFRSLYADESGV--PQRTKM----AFTARPSAAMIKKYTP 65
Query: 57 -----------------VFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQ 99
V F +E IGIK IK + Q + E+ + I V Q T +A +
Sbjct: 66 FTRPNQPEKEAEIGNIHVEFSNESNIGIKHIKNFAQLLSEKNYYTGIFVTQVAPTSAALK 125
Query: 100 SLVDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ + P ++E F E +LL+NI++H+LVP+HI+L+ EEK+ LL RY
Sbjct: 126 IIPSVLPT-VMEIFREEDLLVNISKHDLVPKHILLSQEEKRGLLERY 171
>gi|296822412|ref|XP_002850281.1| DNA-directed RNA polymerase II polypeptide [Arthroderma otae CBS
113480]
gi|238837835|gb|EEQ27497.1| DNA-directed RNA polymerase II polypeptide [Arthroderma otae CBS
113480]
Length = 236
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 18/162 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD------KPSEKRPARSELIVLVAHNDDPTDQ- 54
+L DRGY VT++E+ +L +F+ ++ D + + AR ++ + PT
Sbjct: 29 ELLLDRGYEVTEEEVKISLGEFRRRYSDALGFPDRNKMRISARPSQAMMEKYTPLPTTSK 88
Query: 55 ---------MFVFFPDEPK-IGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
+ V F E + +G K I+ + Q + ++ H I + Q+ ++PSA + L+
Sbjct: 89 PNTAPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFITQSPISPSAIR-LLTA 147
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P E+FLE ELL+NIT HELVP+HI+L+ EEK++LL RY
Sbjct: 148 IPGRFCEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRY 189
>gi|302503318|ref|XP_003013619.1| hypothetical protein ARB_00066 [Arthroderma benhamiae CBS 112371]
gi|302665750|ref|XP_003024482.1| hypothetical protein TRV_01312 [Trichophyton verrucosum HKI 0517]
gi|327294261|ref|XP_003231826.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
gi|291177184|gb|EFE32979.1| hypothetical protein ARB_00066 [Arthroderma benhamiae CBS 112371]
gi|291188539|gb|EFE43871.1| hypothetical protein TRV_01312 [Trichophyton verrucosum HKI 0517]
gi|326465771|gb|EGD91224.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
Length = 236
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 90/162 (55%), Gaps = 18/162 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD------KPSEKRPARSELIVLVAHNDDPT--- 52
+L DRGY VT++E+ +L FK+++ D + + AR ++ + PT
Sbjct: 29 ELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISARPSQAMMERYTPLPTPSK 88
Query: 53 -------DQMFVFFPDEPK-IGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
+ V F E + +G K I+ + Q + ++ H I + Q+ ++PSA + L+
Sbjct: 89 PNTVPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFITQSPISPSAIR-LLTA 147
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P E+FLE ELL+NIT HELVP+HI+L+ EEK++LL RY
Sbjct: 148 IPGRFCEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRY 189
>gi|297796715|ref|XP_002866242.1| hypothetical protein ARALYDRAFT_495901 [Arabidopsis lyrata subsp.
lyrata]
gi|297312077|gb|EFH42501.1| hypothetical protein ARALYDRAFT_495901 [Arabidopsis lyrata subsp.
lyrata]
Length = 213
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 90/149 (60%), Gaps = 4/149 (2%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHND--DPTDQMFVF 58
+Q+ DRGY + + +L+ ++F ++F KP ++ + VA N +P D+++VF
Sbjct: 19 LQMLRDRGYTIEESDLNLKREEFVQRFC-KPMNNMNKVNKEALFVAANKGPNPADKIYVF 77
Query: 59 FPDEPKIGIKTIKT-YCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESE 117
+P+ PK+G+ IK +M+++ + R I+VV +T A+ ++ ++ +E F E+E
Sbjct: 78 YPEGPKVGVPVIKKEVAIKMRDDKVPRGIVVVPMPITGPARMAISELNKILTIEVFEEAE 137
Query: 118 LLINITEHELVPEHIVLTPEEKQELLTRY 146
L+ NITEH+L+ ++ VL + K+ELL Y
Sbjct: 138 LVTNITEHKLINKYYVLDDQAKKELLKTY 166
>gi|357153158|ref|XP_003576358.1| PREDICTED: uncharacterized protein LOC100836489 [Brachypodium
distachyon]
Length = 468
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 88/147 (59%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQM-FVFF 59
+++ DR Y V + +L +TL +F+ + ++P R + S + DP++++ VF
Sbjct: 282 LEMLRDRRYAVPEADLARTLPEFRAWWAERPEIDRLSFSTTLA-----SDPSNKVQLVFC 336
Query: 60 PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
P EP I I+ R+++E + I+V+Q+ +T AK ++ ++ KY ++ F +ELL
Sbjct: 337 PPEP-FKIAAIREVYGRVKDENLSCLILVLQSKITSRAKDAIKEIF-KYKVDVFQIAELL 394
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+N+T+H L PEH VLTPEEK LL +Y
Sbjct: 395 VNVTKHVLKPEHEVLTPEEKAHLLKKY 421
>gi|315056263|ref|XP_003177506.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
gi|311339352|gb|EFQ98554.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
Length = 236
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 90/162 (55%), Gaps = 18/162 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD------KPSEKRPARSELIVLVAHNDDPT--- 52
+L DRGY VT++E+ +L FK+++ D + + AR ++ + PT
Sbjct: 29 ELLLDRGYEVTEEEVKISLGDFKQRYSDALGFPDRNKMRISARPSQAMMERYTPLPTPSK 88
Query: 53 -------DQMFVFFPDEPK-IGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
+ V F E + +G K I+ + Q + ++ H I + Q+ ++PSA + L+
Sbjct: 89 PNTVPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFITQSPISPSAIR-LLTA 147
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P E+FLE ELL+NIT HELVP+HI+L+ EEK++LL RY
Sbjct: 148 IPGRFCEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRY 189
>gi|295671500|ref|XP_002796297.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284430|gb|EEH39996.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
Length = 236
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 87/162 (53%), Gaps = 18/162 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD------KPSEKRPARSELIVLVAHNDDPT--- 52
++ DRGY VT++E+ LD+F+ ++ D + K AR ++ + PT
Sbjct: 29 EMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISARPSQAMMEKYTPLPTVSK 88
Query: 53 -------DQMFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
++V F D +G K ++ + + E+ H I + QT ++PSA + L +
Sbjct: 89 PNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGIFISQTPISPSAMRVL-NS 147
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P E+F E ELL+NIT HELVP+HI+L+ EEK+ LL RY
Sbjct: 148 IPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 189
>gi|160331077|ref|XP_001712246.1| rpabc5 [Hemiselmis andersenii]
gi|159765693|gb|ABW97921.1| rpabc5 [Hemiselmis andersenii]
Length = 216
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 91/155 (58%), Gaps = 14/155 (9%)
Query: 1 MQLCHDRGYLV--TQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVF 58
+Q+ DR Y+V QD+L+ + F+++F + RSEL + + + ++ V
Sbjct: 19 LQMLRDRSYVVFENQDDLEMSRSSFEQKF---VKNFQVIRSELEINRSKWLEENMRILVV 75
Query: 59 FPDEPK----IGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQ---SLVDMAPKYILE 111
F + K IG+K+I+ +C+R++++ +IIV+ +T AKQ S+ + K +E
Sbjct: 76 FIEGEKEKSAIGVKSIRGFCERIKQDGFQNSIIVLHGKLTSHAKQAINSINSLDDK--IE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
YF ESEL++NITEH LVP+H +++ EE + L RY
Sbjct: 134 YFSESELIVNITEHNLVPKHEIISEEEARCLFKRY 168
>gi|70938710|ref|XP_739995.1| DNA-directed RNA polymerase 2 [Plasmodium chabaudi chabaudi]
gi|56517394|emb|CAH79759.1| DNA-directed RNA polymerase 2, putative [Plasmodium chabaudi
chabaudi]
Length = 126
Score = 86.3 bits (212), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 75 QRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELVPEHIVL 134
++M E++I RAI+V Q +TP AK ++ + AP++I+E FL++ELL+NIT+HELVP+HI L
Sbjct: 8 EKMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPL 67
Query: 135 TPEEKQELLTRY 146
T +EK+ LL RY
Sbjct: 68 TSDEKRNLLQRY 79
>gi|83315225|ref|XP_730701.1| RNA polymerase Rpb5 [Plasmodium yoelii yoelii 17XNL]
gi|23490506|gb|EAA22266.1| RNA polymerase Rpb5, C-terminal domain, putative [Plasmodium yoelii
yoelii]
Length = 112
Score = 86.3 bits (212), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 75 QRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELVPEHIVL 134
++M E++I RAI+V Q +TP AK ++ + AP++I+E FL++ELL+NIT+HELVP+HI L
Sbjct: 8 EKMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPL 67
Query: 135 TPEEKQELLTRY 146
T +EK+ LL RY
Sbjct: 68 TSDEKRNLLQRY 79
>gi|326475256|gb|EGD99265.1| DNA-directed RNA polymerase II [Trichophyton tonsurans CBS 112818]
Length = 228
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 90/162 (55%), Gaps = 18/162 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD------KPSEKRPARSELIVLVAHNDDPT--- 52
+L DRGY VT++E+ +L FK+++ D + + AR ++ + PT
Sbjct: 29 ELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISARPSQAMMERYTPLPTPSK 88
Query: 53 -------DQMFVFFPDEPK-IGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
+ V F E + +G K I+ + Q + ++ H I + Q+ ++PSA + L+
Sbjct: 89 PNTVPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFITQSPISPSAIR-LLTA 147
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P E+FLE ELL+NIT HELVP+HI+L+ EEK++LL RY
Sbjct: 148 IPGRFCEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRY 189
>gi|171688464|ref|XP_001909172.1| hypothetical protein [Podospora anserina S mat+]
gi|170944194|emb|CAP70304.1| unnamed protein product [Podospora anserina S mat+]
Length = 235
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 17/162 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQF--GDKPSEK-------RPARSELIVLV----AHN 48
++ DRGY + ++E+ LD+FK +F GD + RP+ S + A N
Sbjct: 27 EMVADRGYELAEEEIKMPLDEFKRKFTNGDGSPNRSIMSFSARPSASMIKKFTPPPTASN 86
Query: 49 DDP---TDQMFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
DP ++V F P++ IGI +K + + + I+V ++ A++ +
Sbjct: 87 PDPAPECGTIWVEFCPEKTSIGISVMKKFVEHCANNSYKAGILVTAVALSAQARKVMTVT 146
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ ++E FLE +LL+NIT HELVP HI+L+ EEK LL RY
Sbjct: 147 SQYTLIECFLEEDLLVNITHHELVPTHILLSREEKMALLKRY 188
>gi|326520990|dbj|BAJ92858.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531658|dbj|BAJ97833.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 251
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 89/147 (60%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQM-FVFF 59
+++ DRGY V +DEL +TL +F+ + + P +R + S + DP+ ++ VF
Sbjct: 65 LEMLRDRGYSVPEDELARTLPEFRAWWSETPEIERLSFSTTLA-----SDPSSKVRIVFC 119
Query: 60 PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
P EP + I I+ R++EE + I+++Q+ +T A++S+ ++ K+ ++ F +ELL
Sbjct: 120 PPEP-VKIAAIREVHLRIKEENLSCLILILQSKITARARESIKEIF-KFKVDVFQITELL 177
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P H VLT EEK +LL Y
Sbjct: 178 VNITKHVLKPNHEVLTAEEKAKLLKEY 204
>gi|378756615|gb|EHY66639.1| hypothetical protein NERG_00279 [Nematocida sp. 1 ERTm2]
Length = 208
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 14/148 (9%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQF------GDKPSEKRPARSELIVLVAHNDDPTDQM 55
Q+ RGY V++ +++ L+ FK + G K S L +L H P Q+
Sbjct: 19 QMMKCRGYTVSEVDMEMDLNAFKTSYPALINTGSKHS--------LSMLFQHTSMPEKQL 70
Query: 56 FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLE 115
FVFFPD K IK Y + ++ IH IIV + + + ++L + Y LE F
Sbjct: 71 FVFFPDNAYFKAKDIKLYTSTLGKQNIHNGIIVCKETLKAHSLKALDESRKDYDLELFYI 130
Query: 116 SELLINITEHELVPEHIVLTPEEKQELL 143
ELL NIT+H+ VP+H++LT EEK+ +L
Sbjct: 131 KELLFNITKHKDVPKHVLLTDEEKKSVL 158
>gi|149239546|ref|XP_001525649.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146451142|gb|EDK45398.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 179
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 19 TLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------MFVFFPDEPKIGIKTIKT 72
TL++F+ + D S P R + + D+ ++V F DEP +GIKT++
Sbjct: 2 TLEEFRAKVCD--SMGYPQRKLMCFQATPTAEQLDKFPEMGSLWVEFCDEPSVGIKTMRN 59
Query: 73 YCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELVPEHI 132
+C + E+ I + Q +TPSA + + + P I E F E++L++NIT HELVP+HI
Sbjct: 60 FCIHISEKNFQVGIFIYQNSITPSANKLIPTVQPASI-ETFQETDLIVNITHHELVPKHI 118
Query: 133 VLTPEEKQELLTRY 146
L EEK+ELL RY
Sbjct: 119 KLNREEKKELLERY 132
>gi|399949804|gb|AFP65461.1| RNA polymerase I, II and III 24.3 kDa subunit [Chroomonas
mesostigmatica CCMP1168]
Length = 216
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 88/152 (57%), Gaps = 10/152 (6%)
Query: 2 QLCHDRGYLV--TQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFF 59
Q+ DRG++V Q++LD F+ +F + R EL ++ ++ V F
Sbjct: 20 QILRDRGFIVLDNQEDLDMPRTVFERKF---VKNYQIVREELEIIRPKWQMENHKILVAF 76
Query: 60 PDEPK----IGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM-APKYILEYFL 114
K IG+K+I+ YC+R++++ +I+V+ +T AKQ++ + + +EYF
Sbjct: 77 VQGEKGKLTIGVKSIREYCERIKQDNYESSILVLHGRLTSHAKQAISSINSVSDRIEYFS 136
Query: 115 ESELLINITEHELVPEHIVLTPEEKQELLTRY 146
ESEL+INITEH LVP+H +++ EEK+ LL RY
Sbjct: 137 ESELIINITEHCLVPKHEIISLEEKKSLLKRY 168
>gi|367046000|ref|XP_003653380.1| hypothetical protein THITE_2170468 [Thielavia terrestris NRRL 8126]
gi|347000642|gb|AEO67044.1| hypothetical protein THITE_2170468 [Thielavia terrestris NRRL 8126]
Length = 234
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 17/162 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQF-GDKPSEKRP-----AR-SELIVL------VAHN 48
++ DRGY + ++E+ +LD+F+ ++ D S R AR SE ++ A N
Sbjct: 26 EMVQDRGYELAEEEVKISLDRFRAEYTNDDGSPNRAKMQFSARPSEAMIKKFTPPPTAAN 85
Query: 49 DDPTDQ---MFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
DP + ++V F PD+ IGI +K + + + I+V ++ A++ +
Sbjct: 86 PDPAPECGTIWVEFCPDKGSIGISVMKKFVEHCAQNNFRAGILVTAVALSAQARKVMTVT 145
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ ++E FLE +LL+NIT HELVP+H++L+ EEK LL RY
Sbjct: 146 SQFTLIECFLEEDLLVNITHHELVPKHVLLSREEKAALLKRY 187
>gi|226289047|gb|EEH44559.1| DNA-directed RNA polymerases I [Paracoccidioides brasiliensis Pb18]
Length = 236
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 18/162 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD------KPSEKRPARSELIVLVAHNDDPT--- 52
++ DRGY VT++E+ L++F+ ++ D + K AR ++ + PT
Sbjct: 29 EMLADRGYEVTEEEIKIPLEEFRTRYSDALGFPDRNKMKISARPSQAMMEKYTPLPTVSK 88
Query: 53 -------DQMFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
++V F D +G K ++ + + E+ H I + QT ++PSA + L +
Sbjct: 89 PNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGIFISQTPISPSAMRVL-NS 147
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P E+F E ELL+NIT HELVP+HI+L+ EEK+ LL RY
Sbjct: 148 IPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 189
>gi|359487223|ref|XP_002269723.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 221
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 86/146 (58%), Gaps = 9/146 (6%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIV-LVAHNDDPTDQMFVFFP 60
Q+ DRGY V EL ++L F+ FG P P+R + + L++ P+ ++ V F
Sbjct: 37 QMLSDRGYNVPHSELTRSLSDFRASFGHNPD---PSRLRICLPLIS---SPSKKILVVFC 90
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+I I+ Q++ E +HR I+V+Q+ M A++ +VD P + E+F +ELLI
Sbjct: 91 GTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHARK-VVDEYPIKV-EFFQITELLI 148
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+H VP+H +L+ +EK++L+ +Y
Sbjct: 149 NITKHVSVPKHEILSAQEKRKLVNKY 174
>gi|449437743|ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449524637|ref|XP_004169328.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 227
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 82/147 (55%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY + +D +L QF+E FG P R S AH+ DP+ ++ V F
Sbjct: 41 VEMLKDRGYTINSPNIDFSLQQFRETFGQFPDVDRLKLS-----AAHHSDPSKRVLVVFC 95
Query: 61 DEPKIGIKTIKTYC-QRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
+ + I+ Q ++++H I++VQ +T A +++ + K +E F ++LL
Sbjct: 96 GTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFK--VEIFQITDLL 153
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P H VLT EEKQ+LL +Y
Sbjct: 154 VNITKHALKPNHQVLTEEEKQKLLKQY 180
>gi|396500613|ref|XP_003845762.1| hypothetical protein LEMA_P010700.1 [Leptosphaeria maculans JN3]
gi|312222343|emb|CBY02283.1| hypothetical protein LEMA_P010700.1 [Leptosphaeria maculans JN3]
Length = 412
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 25/168 (14%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELI--------VLVAHNDDPTD 53
++ DRGY+V +++ +L +F +FG + E P RS L +L + PT
Sbjct: 22 EMMRDRGYMVLEEDTTMSLAEFTSKFGREDGE--PDRSRLNFSCLPSEEMLAKYTPAPTK 79
Query: 54 Q----------MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSL-- 101
+ ++V F + +G+K ++ Y + + +++ MT A + L
Sbjct: 80 KDPNPVPQIGSIWVEFNSDENVGLKQLRDYMGHLLNGNFYSGVMITVQAMTGMAIRLLRG 139
Query: 102 ---VDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ PK +E F+E +LL+NIT+HELVP+H++L+ EEKQ+LL RY
Sbjct: 140 ATSMSDGPKGGVEVFVEQDLLVNITKHELVPKHVLLSAEEKQQLLKRY 187
>gi|406699193|gb|EKD02404.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 211
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY V E++ + D FKE +G S R + H+ D D+++VFF
Sbjct: 21 EMIRDRGYEVADYEINMSFDDFKETYGGGGSVDR---GRMAFHANHSRDSRDRIYVFFCA 77
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
E + T K++ + R +IV +T A ++ +M +Y LE F E++LL+N
Sbjct: 78 EEAVSKATYKSFVTSLDAVGAKRGLIVHGGKLTSGAAKTQNEMQSEYHLEDFKEADLLVN 137
Query: 122 ITEHELVPEHIVL 134
IT H LVP+H ++
Sbjct: 138 ITRHFLVPKHTIM 150
>gi|357500693|ref|XP_003620635.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355495650|gb|AES76853.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 239
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 88/179 (49%), Gaps = 38/179 (21%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ DR YLV + +L + + F +FG+ R +L + H ++ ++++ VFF
Sbjct: 19 LQMLFDRNYLVDETQLTMSREDFIFKFGEHMK-----REQLEINTTHRNNLSEKICVFFF 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAP--KYILEYFL---- 114
D+ K+G+ ++ RM +E + I+V Q ++P+A++++ M+ LE F+
Sbjct: 74 DDAKLGVNIVRGIINRMLKENVDNGIMVCQNKLSPAARKAVAGMSSIGSKRLEVFMDTDT 133
Query: 115 ---------------------------ESELLINITEHELVPEHIVLTPEEKQELLTRY 146
E ELL+NIT+HE VP H VLT EK+ LL RY
Sbjct: 134 CRTAGTPSIKSVGAIELDSLMCRWWKKEDELLVNITKHERVPPHQVLTDTEKKALLKRY 192
>gi|330040362|ref|XP_003239875.1| RNA polymerase I, II and III 24.3 kDa subunit [Cryptomonas
paramecium]
gi|327206800|gb|AEA38977.1| RNA polymerase I, II and III 24.3 kDa subunit [Cryptomonas
paramecium]
Length = 216
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 91/162 (56%), Gaps = 26/162 (16%)
Query: 1 MQLCHDRGYLV--TQDELDQTLDQFKEQF-------GDKPSEKRPARSELIVLVAHNDDP 51
+QL DR YLV ++D+L+ + F+ ++ +K KRP + L
Sbjct: 19 LQLLKDRNYLVFNSKDDLNMSRIDFEFKYVKNYKVVREKMEIKRPLWNSL---------- 68
Query: 52 TDQMFVFFPDEPK----IGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSL--VDMA 105
++ V F ++ K IG+K I+ YC+RM+++ + +IV+ +T AKQ++ ++ +
Sbjct: 69 DKKILVVFIEKEKSGTMIGVKLIRKYCERMKQDQLSNLVIVLHAKLTSHAKQAIDTINSS 128
Query: 106 PKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRYW 147
I EYF ESEL+INIT H LVP+H +L+ EE + L RY+
Sbjct: 129 GDKI-EYFNESELIINITHHTLVPKHEILSLEESKCLFKRYY 169
>gi|258563314|ref|XP_002582402.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237907909|gb|EEP82310.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 239
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 21/166 (12%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGD------KPSEKR---PARSELIVLVAHNDDP 51
++ DRGY VT++E+ +L+ F+ ++ D PS + AR ++ + P
Sbjct: 28 FEMLLDRGYEVTEEEVKISLNDFRSKYADTLGFPDAPSRNKMRISARPSQAMIEKYTPLP 87
Query: 52 T----------DQMFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQS 100
+ ++V F D +G K ++ + + E+ H I + Q+ ++PSA +
Sbjct: 88 SPAKPNPVAECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTGIFITQSPISPSAVRL 147
Query: 101 LVDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
L + P E+FLE ELL+NIT HELVP+H++L+ EEK+ LL RY
Sbjct: 148 LTGI-PGRFCEHFLEQELLVNITHHELVPKHLLLSAEEKKRLLHRY 192
>gi|194693176|gb|ACF80672.1| unknown [Zea mays]
Length = 127
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 56/80 (70%)
Query: 67 IKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHE 126
+K IK Y + M E + RA++V+Q +TP AK L+++ PK LE F E+E+LINI EH
Sbjct: 1 MKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHV 60
Query: 127 LVPEHIVLTPEEKQELLTRY 146
LVPEH VLT EEK+ LL RY
Sbjct: 61 LVPEHQVLTNEEKKTLLERY 80
>gi|146418140|ref|XP_001485036.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
gi|146390509|gb|EDK38667.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
Length = 179
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 17/138 (12%)
Query: 19 TLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ----------MFVFFPDEPKIGIK 68
+LD+F+ + D S P R ++ +PT + ++V F DE +GIK
Sbjct: 2 SLDEFRSKICD--SMGLPQRK----MMCFQANPTAEALEKFPDMGSLWVEFCDEASVGIK 55
Query: 69 TIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELV 128
T++ +C + E+ I + Q +TPSA + + +AP I E F ES+L++NIT H+LV
Sbjct: 56 TMRNFCIHISEKNFSTGIFIYQNSITPSANKLVPTVAPASI-ETFQESDLIVNITHHDLV 114
Query: 129 PEHIVLTPEEKQELLTRY 146
P+HI L+ EK+ELL RY
Sbjct: 115 PKHIKLSIGEKKELLARY 132
>gi|297742693|emb|CBI35146.3| unnamed protein product [Vitis vinifera]
Length = 731
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 84/145 (57%), Gaps = 7/145 (4%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
Q+ DRGY V EL ++L F+ FG P P+R L + + P+ ++ V F
Sbjct: 547 QMLSDRGYNVPHSELTRSLSDFRASFGHNPD---PSR--LRICLPLISSPSKKILVVFCG 601
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
+I I+ Q++ E +HR I+V+Q+ M A++ +VD P + E+F +ELLIN
Sbjct: 602 TDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHARK-VVDEYPIKV-EFFQITELLIN 659
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT+H VP+H +L+ +EK++L+ +Y
Sbjct: 660 ITKHVSVPKHEILSAQEKRKLVNKY 684
>gi|400596436|gb|EJP64210.1| RNA polymerase Rpb5 domain-containing protein [Beauveria bassiana
ARSEF 2860]
Length = 232
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 16/161 (9%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD------KPSEKRPARSELIVLVAHNDDPTDQ- 54
++ DR Y + QDE++ +LD+F+ +F + + + AR +L H TD
Sbjct: 25 EMVADRDYELAQDEINISLDRFRSEFCNPDGTVNRAKLQFSARPSDAMLRKHTPPATDAN 84
Query: 55 ---------MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMA 105
++V F + + G+ I+ + + I+V ++P+A++SL +
Sbjct: 85 PDPVPDCGPIWVEFLADKQFGVAQIRQFAKYTITNNYKTGIMVTHVALSPAARKSLASVE 144
Query: 106 PKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+E FLE +LL+NIT HELVP H++L+ EEK LL RY
Sbjct: 145 NLAKIECFLEDDLLVNITHHELVPRHVLLSREEKVALLRRY 185
>gi|380474201|emb|CCF45905.1| RNA polymerase Rpb5, partial [Colletotrichum higginsianum]
Length = 219
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 28/167 (16%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKE--------------QFGDKPSEKRPARSELIVL--- 44
++ DRGY + +DEL +LD+FK QF PS +++I
Sbjct: 23 EMAADRGYELAEDELKISLDRFKMEYTAADGSVNRGKLQFSANPS------ADMIRKYTP 76
Query: 45 --VAHNDDPT---DQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQ 99
+ N +PT ++V F + GIK IK + + I+V ++P+A++
Sbjct: 77 PPTSQNPNPTPDCGTLWVEFLADTTFGIKEIKKFIHHLISNKYSSGIMVTHVPLSPAARK 136
Query: 100 SLVDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
L+ +E FLE +LL+NIT+HELVP+HI+L+ EEK LL RY
Sbjct: 137 MLITXESFXKVECFLEEDLLVNITQHELVPKHILLSREEKVALLKRY 183
>gi|154411936|ref|XP_001579002.1| RNA polymerase Rpb5, N-terminal domain containing protein
[Trichomonas vaginalis G3]
gi|121913204|gb|EAY18016.1| RNA polymerase Rpb5, N-terminal domain containing protein
[Trichomonas vaginalis G3]
Length = 202
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
Q+ DRGY V L+ + D+F + + P S + +++ FF
Sbjct: 18 QMMRDRGYNVDPSRLEISHDKFNKVYSGNPHNLNECYSNM---------EGERILTFFDL 68
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTG-MTPSAKQSLVDM-APKYILEYFLESELL 119
++ KTI+T + M E ++RAI++ G +TP+A ++L ++ + +E+F E++
Sbjct: 69 IERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILTPTAARNLDNVRSSGKTIEFFSFDEVI 128
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
INITEHELVP+H VLT +EKQE+L RY
Sbjct: 129 INITEHELVPKHEVLTEDEKQEVLKRY 155
>gi|440302517|gb|ELP94824.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Entamoeba invadens IP1]
Length = 217
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 2/146 (1%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+ + DRGY+ + TLD+F+E+ G R +L + D + V F
Sbjct: 27 LDMLKDRGYVTNDLDHQTTLDEFRERVG--VGADGVDRGKLTIKAVREGSADDGIIVLFA 84
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+ K+ + ++Y + +Q + RAI+V + ++ Q + K E LE EL++
Sbjct: 85 KDDKMKTEVFRSYAEEVQGQECKRAIVVYRGQLSSVIVQFVNSSEQKVKWELLLEDELIV 144
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
N+T+H LVPEHI LT EEKQ +L +Y
Sbjct: 145 NVTKHVLVPEHIKLTDEEKQAVLKKY 170
>gi|310792261|gb|EFQ27788.1| RNA polymerase Rpb5 domain-containing protein [Glomerella
graminicola M1.001]
Length = 230
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 28/167 (16%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKE--------------QFGDKPSEKRPARSELIVLVA- 46
++ DRGY + +DEL +LD+FK QF PS +E+I
Sbjct: 23 EMAADRGYELAEDELTISLDRFKMEYTSADGSVNRNKLQFSANPS------AEMIRKFTP 76
Query: 47 ----HNDDPTDQ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQ 99
N +P + ++V F + GIK IK + + I++ ++P+A++
Sbjct: 77 PATPQNPNPAPECGTLWVEFLADTTFGIKEIKKFIHHLISNKYSSGIMITHVALSPAARK 136
Query: 100 SLVDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
L+ + +E FLE +LL+NIT+HELVP+HI+L+ EEK LL RY
Sbjct: 137 MLITIESFAKVECFLEEDLLVNITKHELVPKHILLSREEKIALLKRY 183
>gi|108862173|gb|ABA96407.2| RNA polymerase Rpb5, N-terminal domain containing protein,
expressed [Oryza sativa Japonica Group]
Length = 335
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 91/147 (61%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQM-FVFF 59
M++ DRGY V + E+ +TL +F+ + +KP +R A + +V DP+ ++ VF
Sbjct: 149 MEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLV-----SDPSKKVQLVFC 203
Query: 60 PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
P EP + I TI+ + +EE + R ++++Q+ + A++++ ++ K+ ++ F ++LL
Sbjct: 204 PPEP-VKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIFQATDLL 261
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P+H VL+ ++K +LL Y
Sbjct: 262 VNITKHVLKPKHEVLSADQKAKLLKEY 288
>gi|242778512|ref|XP_002479254.1| RNA polymerase subunit [Talaromyces stipitatus ATCC 10500]
gi|218722873|gb|EED22291.1| RNA polymerase subunit [Talaromyces stipitatus ATCC 10500]
Length = 236
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 19/163 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDK--------------PSEKRPARSELIVLVAH 47
++ DRGY ++++E+ F +FG + PSE A+ +
Sbjct: 28 EMLRDRGYEMSEEEVKIDYQDFANKFGGEHGYPSRAKMTIAAMPSEAMKAKYTPLKKRVS 87
Query: 48 NDDPTDQ---MFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVD 103
+ DP ++V F D +G K ++ + + E H I + +T ++PSA + L+
Sbjct: 88 DPDPVPDCGPIYVQFCEDTTGVGAKQVRAFNHLVDEGNYHSGIFITRTAISPSAMR-LLS 146
Query: 104 MAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
A +I E+F ES+LL+NIT HELVP+H++L+ EEK LL RY
Sbjct: 147 SAVGHICEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERY 189
>gi|406866728|gb|EKD19767.1| RNA polymerase subunit [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 231
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 88/161 (54%), Gaps = 22/161 (13%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKE--------------QFGDKPSEKRPARSELIVLVAH 47
++ DRGY ++++E+ + FK QF +PS+K ++ A
Sbjct: 30 EMVADRGYELSEEEVKISFADFKSTYTLADGSINRKGMQFSARPSDK------MMKQYAL 83
Query: 48 NDDPTD--QMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMA 105
D +D ++V F +E +GIK ++T+ Q + I+V +TP+A + + +A
Sbjct: 84 PDGTSDIGTVWVEFLNETNVGIKQMRTFAQYCSANSFATGILVTAVTITPAALKIIPAVA 143
Query: 106 PKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ +E F++++LL+NIT HELVP+HI L+ +EK+ LL RY
Sbjct: 144 SETRIECFMDADLLVNITHHELVPKHITLSRDEKKALLERY 184
>gi|115492143|ref|XP_001210699.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114197559|gb|EAU39259.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 219
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 58 FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESE 117
F PD +G K ++ + + E H I + QT ++PSA + L+ P I E+F E +
Sbjct: 85 FCPDSSGVGTKQVRAFNHTVDEHNFHTGIFITQTPISPSAVR-LLSGVPGRICEHFQEQD 143
Query: 118 LLINITEHELVPEHIVLTPEEKQELLTRY 146
LL+NIT HELVP+H++L+PEEK+ LL RY
Sbjct: 144 LLVNITRHELVPKHVLLSPEEKKRLLDRY 172
>gi|119186603|ref|XP_001243908.1| hypothetical protein CIMG_03349 [Coccidioides immitis RS]
gi|303317654|ref|XP_003068829.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108510|gb|EER26684.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038831|gb|EFW20766.1| DNA-directed RNA polymerase 1 [Coccidioides posadasii str.
Silveira]
gi|392870629|gb|EAS32444.2| DNA-directed RNA polymerase II polypeptide [Coccidioides immitis
RS]
Length = 236
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 18/163 (11%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPS---------EKRPARS--ELIVLVAHND 49
++ DRGY VT++E++ L +F+ ++ D RP+++ E +A
Sbjct: 28 FEMLLDRGYEVTEEEVNVPLAEFRTKYSDALGFPDRNKMRISARPSQTMIEKYTPLASPA 87
Query: 50 DP-----TDQMFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVD 103
P ++V F D +G K ++ + + E+ H I + Q+ ++PSA + L
Sbjct: 88 KPNPVPECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTGIFITQSPISPSAIRLLTG 147
Query: 104 MAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ P E+FLE ELL+NIT HELVP+H++L+ EEK+ LL RY
Sbjct: 148 I-PGRFCEHFLEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189
>gi|154292350|ref|XP_001546750.1| hypothetical protein BC1G_14664 [Botryotinia fuckeliana B05.10]
Length = 242
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 23/166 (13%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDK--------------PSEKRPARSELIVLVAH 47
++ DRGYL+ ++E++ + D FK +F PSE AR + A
Sbjct: 31 EMVQDRGYLLAEEEVNMSFDTFKSKFTSNDGSVDRRQMNFSATPSEAMIARYA-VAPTAE 89
Query: 48 NDDPTDQM-------FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQS 100
N +PT F+ D IGIK ++T+ Q + + I++ + A++
Sbjct: 90 NPNPTTSEIGTIWIEFLMVTD-VSIGIKQMRTFAQHLSQHNFSAGILIAPVAPSGPAQKI 148
Query: 101 LVDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ +A + +E F+E +LL+NIT HELVP+H++L+ EE+ +LL+RY
Sbjct: 149 IPAVASETRIETFVEQDLLVNITHHELVPKHVLLSREERAKLLSRY 194
>gi|340959991|gb|EGS21172.1| RNA polymerases I, II, and III-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 547
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 17/162 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKE--------------QFGDKPSE---KRPARSELIVL 44
++ DRGY + +E+ +L++FK QF +PSE K+
Sbjct: 26 EMVQDRGYELADEEVKISLERFKAEYTNEDGSPNRAKMQFSARPSEAMIKKFTPPPTPQN 85
Query: 45 VAHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
+ F P++ IGI +K + + + I+V ++ A++ +
Sbjct: 86 PDPQPECGTIWVEFCPEKTSIGISVMKKFVEHCAQNNFKAGILVTAVALSSQARKVMTVT 145
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ ++E FLE +LL+NIT HELVP+HI+L+ EEK LL RY
Sbjct: 146 SQFTLIECFLEEDLLVNITHHELVPKHILLSREEKAALLKRY 187
>gi|238488995|ref|XP_002375735.1| RNA polymerase subunit [Aspergillus flavus NRRL3357]
gi|220698123|gb|EED54463.1| RNA polymerase subunit [Aspergillus flavus NRRL3357]
Length = 171
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 58 FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESE 117
F PD +G K ++ + + E H + + QT ++PSA + L+ P I E+F E +
Sbjct: 37 FCPDSTGVGTKQVRAFNHVVDENNFHTGVFITQTPISPSAVR-LLSGVPGRICEHFQEQD 95
Query: 118 LLINITEHELVPEHIVLTPEEKQELLTRY 146
LL+NIT HELVP+H++L+PEEK +LL RY
Sbjct: 96 LLVNITRHELVPKHVLLSPEEKAKLLARY 124
>gi|367022836|ref|XP_003660703.1| hypothetical protein MYCTH_2314258 [Myceliophthora thermophila ATCC
42464]
gi|347007970|gb|AEO55458.1| hypothetical protein MYCTH_2314258 [Myceliophthora thermophila ATCC
42464]
Length = 234
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 17/162 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQF--------------KEQFGDKPSE---KRPARSELIVL 44
++ DRGY + +DE+ +LD+F K QF +PSE K+
Sbjct: 26 EMVQDRGYELAEDEVKISLDRFRAEYTNEDGSPNRAKMQFSARPSEAMIKKFTPPPTPSN 85
Query: 45 VAHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
+ F P++ IGI +K + + I+V ++ A++ +
Sbjct: 86 PDPAPECGTIWVEFCPEKTSIGISVMKKFVEHCSANNFKAGILVTAVALSAQARKVMTVT 145
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ ++E FLE +LL+NIT HELVP+H++L+ EEK LL RY
Sbjct: 146 SQFTLIECFLEEDLLVNITHHELVPKHVLLSREEKAALLKRY 187
>gi|300175741|emb|CBK21284.2| unnamed protein product [Blastocystis hominis]
Length = 206
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 5/145 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ RGY++ + D F +FG++P + L V+ + D + F
Sbjct: 19 IKMMTKRGYVLRMTDDMTKYDAFLSRFGNEPDYE-----SLSVIGKRLSNKNDGCLLIFN 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
D P +G I+ +++++E I AIIVV+ + +AK + P + L+ F ES LL+
Sbjct: 74 DSPSLGAPAIREIIEQLEKENISSAIIVVKNRIPSTAKHACKKFEPIFHLDLFKESSLLV 133
Query: 121 NITEHELVPEHIVLTPEEKQELLTR 145
+ITEH LVP HI L+ +E +ELL R
Sbjct: 134 DITEHFLVPPHIALSEQETKELLER 158
>gi|346703375|emb|CBX25472.1| hypothetical_protein [Oryza glaberrima]
Length = 206
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 91/147 (61%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQM-FVFF 59
M++ DRGY V + E+ +TL +F+ + +KP +R A + +V DP+ ++ VF
Sbjct: 20 MEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLV-----SDPSKKVQLVFC 74
Query: 60 PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
P EP + I TI+ + +EE + R ++++Q+ + A++++ ++ K+ ++ F ++LL
Sbjct: 75 PPEP-VKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIFQATDLL 132
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P+H VL+ ++K +LL Y
Sbjct: 133 VNITKHVLKPKHEVLSADQKAKLLKEY 159
>gi|302423138|ref|XP_003009399.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|261352545|gb|EEY14973.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|346970556|gb|EGY14008.1| DNA-directed RNA polymerases I [Verticillium dahliae VdLs.17]
Length = 231
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 87/162 (53%), Gaps = 17/162 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQ--------------FGDKPSEKRPARSELIVLVAH 47
++C DRGY + + E+ +LD+F+ + F +PS +R A+
Sbjct: 23 EMCADRGYELAESEIQISLDRFRHEYLAADGSVNRSKLTFSARPSSDMLSRHTPAPSAAN 82
Query: 48 -NDDP-TDQMFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
N DP +++ F ++ +G++ ++ + Q + E I+V + +T + ++ L+ +
Sbjct: 83 PNPDPDCGPIYIEFIAEQGSLGVQHLRRFVQHVLEGHFKAGIMVTSSPLTSAGRKQLLSL 142
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+E FLE +LL+NIT HELVP+HI+L+ +EK LL RY
Sbjct: 143 ESFARIECFLEEDLLVNITHHELVPKHILLSTDEKAALLKRY 184
>gi|115487264|ref|NP_001066119.1| Os12g0139500 [Oryza sativa Japonica Group]
gi|113648626|dbj|BAF29138.1| Os12g0139500 [Oryza sativa Japonica Group]
gi|125535725|gb|EAY82213.1| hypothetical protein OsI_37416 [Oryza sativa Indica Group]
gi|125578454|gb|EAZ19600.1| hypothetical protein OsJ_35178 [Oryza sativa Japonica Group]
gi|346703760|emb|CBX24428.1| hypothetical_protein [Oryza glaberrima]
Length = 227
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 91/147 (61%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQM-FVFF 59
M++ DRGY V + E+ +TL +F+ + +KP +R A + +V DP+ ++ VF
Sbjct: 41 MEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLV-----SDPSKKVQLVFC 95
Query: 60 PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
P EP + I TI+ + +EE + R ++++Q+ + A++++ ++ K+ ++ F ++LL
Sbjct: 96 PPEP-VKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIFQATDLL 153
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P+H VL+ ++K +LL Y
Sbjct: 154 VNITKHVLKPKHEVLSADQKAKLLKEY 180
>gi|115484123|ref|NP_001065723.1| Os11g0143400 [Oryza sativa Japonica Group]
gi|77548620|gb|ABA91417.1| RNA polymerase Rpb5, N-terminal domain containing protein,
expressed [Oryza sativa Japonica Group]
gi|113644427|dbj|BAF27568.1| Os11g0143400 [Oryza sativa Japonica Group]
gi|125576186|gb|EAZ17408.1| hypothetical protein OsJ_32930 [Oryza sativa Japonica Group]
Length = 227
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 91/147 (61%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQM-FVFF 59
M++ DRGY V + E+ +TL +F+ + +KP +R A + +V DP+ ++ VF
Sbjct: 41 MEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLV-----SDPSKKVQLVFC 95
Query: 60 PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
P EP + I TI+ + +EE + R ++++Q+ + A++++ ++ K+ ++ F ++LL
Sbjct: 96 PPEP-VKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIFQATDLL 153
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P+H VL+ ++K +LL Y
Sbjct: 154 VNITKHVLKPKHEVLSADQKAKLLKEY 180
>gi|346703190|emb|CBX25289.1| hypothetical_protein [Oryza brachyantha]
Length = 288
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 91/147 (61%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQM-FVFF 59
+++ DRGY V ++E+ +TL +F+ +G+K +R A + +V DP+ ++ VF
Sbjct: 102 LEMLRDRGYSVPEEEIARTLPEFRAWWGEKSEIERLAFTTTLV-----SDPSKKVQIVFC 156
Query: 60 PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
P EP + I TI+ ++ + E + R I+++Q+ + A++S+ ++ K ++ F +ELL
Sbjct: 157 PPEP-VKIATIREIYRQTEGENLSRLILILQSRILSRARESIKEIF-KLKVDIFQVTELL 214
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P+H VL+ +K +LL +Y
Sbjct: 215 VNITKHVLKPKHEVLSAAQKAKLLKQY 241
>gi|70996052|ref|XP_752781.1| RNA polymerase subunit [Aspergillus fumigatus Af293]
gi|66850416|gb|EAL90743.1| RNA polymerase subunit [Aspergillus fumigatus Af293]
gi|159131535|gb|EDP56648.1| RNA polymerase subunit [Aspergillus fumigatus A1163]
Length = 171
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 58 FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESE 117
F D +G K ++ + + E H + + QT ++PSA + L+ P I E+F E +
Sbjct: 37 FCADSTGVGTKQVRAFNHFVDENNFHTGVFITQTPISPSAVR-LLSGIPGRICEHFQEQD 95
Query: 118 LLINITEHELVPEHIVLTPEEKQELLTRY 146
LL+NIT HELVP+H++L+PEEK+ LL RY
Sbjct: 96 LLVNITRHELVPKHVLLSPEEKKNLLQRY 124
>gi|212533615|ref|XP_002146964.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
gi|210072328|gb|EEA26417.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
Length = 172
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 2/94 (2%)
Query: 54 QMFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEY 112
Q+FV F D +G K ++ + + E H I + +T ++PSA + L++ A +I E+
Sbjct: 33 QIFVQFCEDTTGVGAKQVRQFNHLVDEGNYHSGIFITRTAISPSAVR-LLNSAIGHICEH 91
Query: 113 FLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F ES+LL+NIT HELVP+H++L+ EEK LL RY
Sbjct: 92 FQESDLLVNITHHELVPKHVLLSAEEKARLLERY 125
>gi|255544029|ref|XP_002513077.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223548088|gb|EEF49580.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 239
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 80/147 (54%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M++ DRGY V EL + +F +FGD P + L + + + P +M V F
Sbjct: 53 MEMLRDRGYDVADSELTGSFTEFLSEFGDNPDILK-----LRISASLHSHPDKKMVVVFM 107
Query: 61 DEPKIGIKTIK-TYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
+I + I+ CQ +E+++ I+++Q+ M A++ L K +E F S+LL
Sbjct: 108 GTEEIKLANIRGLLCQIKNKESLNGLILILQSKMNHYARKELGQFPSK--VEIFHISDLL 165
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P H VLT E+KQ+LL ++
Sbjct: 166 VNITKHVLKPRHEVLTAEQKQQLLNKF 192
>gi|44890007|emb|CAF32125.1| DNA-directed RNA polymerase, putative [Aspergillus fumigatus]
Length = 220
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 58 FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESE 117
F D +G K ++ + + E H + + QT ++PSA + L+ P I E+F E +
Sbjct: 86 FCADSTGVGTKQVRAFNHFVDENNFHTGVFITQTPISPSAVR-LLSGIPGRICEHFQEQD 144
Query: 118 LLINITEHELVPEHIVLTPEEKQELLTRY 146
LL+NIT HELVP+H++L+PEEK+ LL RY
Sbjct: 145 LLVNITRHELVPKHVLLSPEEKKNLLQRY 173
>gi|358384639|gb|EHK22236.1| hypothetical protein TRIVIDRAFT_84202 [Trichoderma virens Gv29-8]
Length = 233
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 18/162 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKE--------------QFGDKPSEKRPARSELIVLVAH 47
++ DR Y + +DE+ +LD+F++ QF +PS+ R A
Sbjct: 26 EMVADREYELAEDEVTISLDRFRDEYCHPDGTVNRAKLQFSARPSDSM-LRKNTPPATAS 84
Query: 48 NDDPTDQ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
N DP ++V F + + G+ I+ + + I+V ++P+A++SL +
Sbjct: 85 NPDPVPDCGPIWVEFLTDKQFGVGQIRQFAKYTISNNYKTGIMVTHVPLSPAARKSLASV 144
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+E FLE +LL+NIT HELVP H++L+ EEK LL RY
Sbjct: 145 ENLAKIECFLEDDLLVNITHHELVPRHVLLSREEKIALLKRY 186
>gi|358393858|gb|EHK43259.1| hypothetical protein TRIATDRAFT_301149 [Trichoderma atroviride IMI
206040]
Length = 233
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 18/162 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKE--------------QFGDKPSEKRPARSELIVLVAH 47
++ DR Y + +DE+ +L++F++ QF +PS+ R A
Sbjct: 26 EMVADREYELAEDEVSISLERFRDEYCHPDGSVNRAKLQFSARPSDSM-LRKNTPPATAS 84
Query: 48 NDDPTDQ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
N DP ++V F + + G+ I+ + + I+V ++P+A++SL +
Sbjct: 85 NPDPVPDCGPIWVEFLTDKQFGVSQIRNFAKYTITNNYKTGIMVTPVALSPAARKSLASV 144
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+E FLE +LL+NIT HELVP H++L+ EEK LL RY
Sbjct: 145 ENLAKIECFLEDDLLVNITHHELVPRHVLLSREEKIALLKRY 186
>gi|255576548|ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223531389|gb|EEF33224.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 238
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 11/152 (7%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY V E+D +L +F+ G P R S H DP+ +M V F
Sbjct: 52 LEMLRDRGYSVPSSEIDLSLQEFRAIHGPNPDIDRLKFS-----ATHTSDPSKRMLVLFG 106
Query: 61 DEPKIGIKTIKTYC-QRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
I + TI+ Q + ++++ I+V+Q +T A ++ VD+ K+ +E F ++LL
Sbjct: 107 GPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQITNQAMKA-VDLF-KFKVEMFQITDLL 164
Query: 120 INITEHELVPEHIVLTPEEKQELLTRYWRSCV 151
+NIT+H L P+H VLT EKQ+LL Y C+
Sbjct: 165 VNITKHVLKPKHQVLTDREKQKLLKDY---CI 193
>gi|156061727|ref|XP_001596786.1| hypothetical protein SS1G_03009 [Sclerotinia sclerotiorum 1980]
gi|154700410|gb|EDO00149.1| hypothetical protein SS1G_03009 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 242
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 19/164 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQF--GDKPSEKR----PARSELIVLVAHNDDPTDQ- 54
++ DRGYL+ ++E++ + D FK +F D ++R A ++ + + PT Q
Sbjct: 31 EMVQDRGYLLAEEEVNMSFDTFKAKFTSNDGSVDRRQMNFSATPSEAMIAKYANAPTPQN 90
Query: 55 ----------MFVFF--PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLV 102
++V F + IGIK ++T+ Q + + I++ + A++ +
Sbjct: 91 PNPTTSEIGTIWVEFLMVTDVSIGIKQMRTFAQHLSQHNFSAGILIAPVPPSGPAQKIIP 150
Query: 103 DMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+A +E F+E +LL+NIT HELVP+H++L+ EE+ +LL+RY
Sbjct: 151 AVASDTRIETFVEQDLLVNITHHELVPKHVLLSKEERAKLLSRY 194
>gi|402084014|gb|EJT79032.1| DNA-directed RNA polymerase I [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 233
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 88/164 (53%), Gaps = 19/164 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSEL------IVLVAHNDDPTDQ- 54
++ DRGY ++Q+E++ +LD+F +Q+ D ++ + ++ H PT+Q
Sbjct: 23 EMLQDRGYELSQEEVNISLDRFLQQYTDGAGNVDASKLKFSAHPSEAMIKKHTPPPTEQR 82
Query: 55 ---------MFVFF---PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLV 102
++V F + +GI+ I+++ Q E H I++ ++ ++ +++ +
Sbjct: 83 PDPVPECGTVWVEFMGDASDKSLGIQAIRSFIQYTVEHNFHTGIMITKSPISSGSRKLIG 142
Query: 103 DMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
A +E F+ ++L+NIT HELVP+H++L+ EK LL RY
Sbjct: 143 ASANYATIEAFMLDDMLVNITHHELVPKHVLLSKIEKAALLERY 186
>gi|429861288|gb|ELA35981.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Colletotrichum
gloeosporioides Nara gc5]
Length = 204
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 85/156 (54%), Gaps = 16/156 (10%)
Query: 7 RGYLVTQDELDQTLDQFKEQF--GDKPSEKRPAR------SELIVL-----VAHNDDPTD 53
+GY + ++EL +LD+FK ++ GD + + +++I + N +PT
Sbjct: 2 QGYELAEEELTISLDRFKMEYTSGDGSVNRGKLQFSANPSADMIRKFTPPPTSQNPNPTP 61
Query: 54 Q---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYIL 110
+ ++V F + GIK IK + + I+V ++P+A++ LV + +
Sbjct: 62 ECGTLWVEFLADTTFGIKEIKKFIHHLISNKYSSGIMVTHVPLSPAARKMLVTIESFAKV 121
Query: 111 EYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
E FLE +LL+NIT+HELVP HI+L+ EEK LL RY
Sbjct: 122 ECFLEEDLLVNITKHELVPRHILLSREEKIALLKRY 157
>gi|169600143|ref|XP_001793494.1| hypothetical protein SNOG_02900 [Phaeosphaeria nodorum SN15]
gi|160705387|gb|EAT89631.2| hypothetical protein SNOG_02900 [Phaeosphaeria nodorum SN15]
Length = 277
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 90/168 (53%), Gaps = 25/168 (14%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELI--------VLVAHNDDPTD 53
++ ++RGY V +E+ +L+ F +++ + E P RS L +L+ + PT
Sbjct: 65 EMMYERGYNVLDEEMTMSLEAFADKYAREDGE--PDRSRLNFSSTPSEEMLIKYTPMPTK 122
Query: 54 Q----------MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQ---TGMTPSAKQS 100
+ ++ F + +G+K ++ + + + + I+V TGM +
Sbjct: 123 KEPNPVPAIGTIWCEFNADEAVGLKQLRDFMNHLGSGSFYSGIMVTVKPITGMAIRLLRG 182
Query: 101 LVDMA--PKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+++ PK +E F+E +LL+NIT+HELVP+H++L+ EEK +LLTRY
Sbjct: 183 ASNLSDGPKGGIEVFVEQDLLVNITKHELVPKHVLLSAEEKAQLLTRY 230
>gi|340521475|gb|EGR51709.1| predicted protein [Trichoderma reesei QM6a]
Length = 237
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 28/169 (16%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFG--DKPSEKRPARSELIVLVAHNDDPTDQM---- 55
++ DR Y + +DE++ +LD+F++++ D ++ +R++L + P+D M
Sbjct: 26 EMVADREYELAEDEVNISLDRFRDEYCHPDGTLTQKNSRAKL----QFSARPSDSMLRKN 81
Query: 56 ------------------FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSA 97
+V F + + G+ I+ + + I+V ++P+A
Sbjct: 82 TPPATPSNPDPVPDCGPIWVEFLTDKQFGVGQIRQFAKYTISNNYKTGIMVTHVPLSPAA 141
Query: 98 KQSLVDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
++SL + +E FLE +LL+NIT HELVP H++L+ EEK LL RY
Sbjct: 142 RKSLASVENLAKIECFLEDDLLVNITHHELVPRHVLLSREEKIALLKRY 190
>gi|125533361|gb|EAY79909.1| hypothetical protein OsI_35073 [Oryza sativa Indica Group]
Length = 227
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 90/147 (61%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQM-FVFF 59
M++ DRGY V + E+ +T +F+ + +KP +R A + +V DP+ ++ VF
Sbjct: 41 MEMLRDRGYSVPEAEIARTPPEFRAWWAEKPGIERLAFTTTLV-----SDPSKKVQLVFC 95
Query: 60 PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
P EP + I TI+ + +EE + R ++++Q+ + A++++ ++ K+ ++ F ++LL
Sbjct: 96 PPEP-VKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIFQATDLL 153
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P+H VL+ ++K +LL Y
Sbjct: 154 VNITKHVLKPKHEVLSADQKAKLLKEY 180
>gi|408398400|gb|EKJ77531.1| hypothetical protein FPSE_02281 [Fusarium pseudograminearum CS3096]
Length = 234
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 16/161 (9%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQF----GDKPSEK-----RPARSELIVLV----AHN 48
++ DR Y + ++E+ +LD+F++++ G K RP+ + + A N
Sbjct: 27 EMVADREYELAEEEVKISLDRFRDEYCNPDGSINRNKLSFSARPSTAMMRKFTPPATAAN 86
Query: 49 DDPTDQ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMA 105
DP +++ F + G+ I+ + + I++ ++P+A++SL +
Sbjct: 87 PDPVADCGPIWIEFLADKTFGVNQIRAFASYVISNNYKTGIMITHVPLSPAARRSLASVE 146
Query: 106 PKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+E FLE +LL+NIT HELVP+H++L+ EEK LL RY
Sbjct: 147 SLAKIECFLEDDLLVNITHHELVPKHVLLSREEKIALLKRY 187
>gi|225681878|gb|EEH20162.1| DNA-directed RNA polymerases I [Paracoccidioides brasiliensis Pb03]
Length = 171
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 58 FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESE 117
F D +G K ++ + + E+ H I + QT ++PSA + L + P E+F E E
Sbjct: 37 FCADIQSVGTKQVRAFNHFIDEQNYHTGIFISQTPISPSAMRVL-NSIPGRFCEHFQEQE 95
Query: 118 LLINITEHELVPEHIVLTPEEKQELLTRY 146
LL+NIT HELVP+HI+L+ EEK+ LL RY
Sbjct: 96 LLVNITHHELVPKHILLSAEEKKRLLQRY 124
>gi|342884561|gb|EGU84768.1| hypothetical protein FOXB_04663 [Fusarium oxysporum Fo5176]
Length = 236
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 86/163 (52%), Gaps = 18/163 (11%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKE--------------QFGDKPSEKRPARSELIVLVAH 47
++ DR Y + ++E+ +LD+F++ QF +PSE ++ V A+
Sbjct: 27 EMVADREYELAEEEVKISLDRFRDEYCNPDGSINRAKLQFSARPSENMIRKNTPPVTAAN 86
Query: 48 -NDDPTDQ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVD 103
N +P ++V F + G+ I+ + + + I+V ++P+A+++L
Sbjct: 87 PNPNPGADCGPVWVEFLADKTFGVNQIRQFAKYVITNNYKTGIMVTHVPLSPAARKTLQS 146
Query: 104 MAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ +E FLE +LL+NIT HELVP+H++L+ EEK LL RY
Sbjct: 147 VESVAKIECFLEDDLLVNITHHELVPKHVLLSREEKLALLKRY 189
>gi|46136465|ref|XP_389924.1| hypothetical protein FG09748.1 [Gibberella zeae PH-1]
Length = 253
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 20/165 (12%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGD------------KPS-EKRPARSELIVLV--- 45
++ DR Y + ++E+ +LD+F++++ + K S RP+ + +
Sbjct: 27 EMVADREYELAEEEVKISLDRFRDEYCNPDGSININYSRNKLSFSARPSTAMMRKFTPPA 86
Query: 46 -AHNDDPTDQ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSL 101
A N DP +++ F + G+ I+ + + I++ ++P+A++SL
Sbjct: 87 TAANPDPVADCGPIWIEFLADKTFGVSQIRAFASYVISNNYKTGIMITHVPLSPAARRSL 146
Query: 102 VDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ +E FLE +LL+NIT HELVP+H++L+ EEK LL RY
Sbjct: 147 ASVESLAKIECFLEDDLLVNITHHELVPKHVLLSREEKIALLKRY 191
>gi|87162511|gb|ABD28306.1| RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal
[Medicago truncatula]
Length = 224
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 89/149 (59%), Gaps = 12/149 (8%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M + HDRGY V++ +L +L +F+ +FG+ P +P L V V+ +P+ ++ V FP
Sbjct: 38 MDMLHDRGYNVSESDLTLSLSEFRSRFGEFP---KP--HTLGVSVSLRSNPSIKVQVVFP 92
Query: 61 ---DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESE 117
D K + I++ Q + +E + R I+V+Q+ MT A++ L + K +E ++
Sbjct: 93 GTDDIRKSNLIVIQS--QIVDKERLSRLILVMQSKMTSYARKELENCPFK--VEIIQLND 148
Query: 118 LLINITEHELVPEHIVLTPEEKQELLTRY 146
LL+N+T+H L P++ VLT EKQ+LL +Y
Sbjct: 149 LLVNVTKHVLQPKYEVLTANEKQKLLNKY 177
>gi|346703279|emb|CBX25377.1| hypothetical_protein [Oryza brachyantha]
Length = 226
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 89/147 (60%), Gaps = 10/147 (6%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQM-FVFF 59
+++ DRGY V +E+ +TL +F+ +G+K +R A + +V DP+ ++ VF
Sbjct: 42 LEMLRDRGYSVPDEEIARTLPEFRAWWGEKSEIERLAFTTTLV-----SDPSKKVQIVFC 96
Query: 60 PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
P EP + I TI+ ++ + E + R I+++Q+ + A++S+ ++ + L+ + ELL
Sbjct: 97 PPEP-VKIATIREIYRQTEGENLSRLILILQSRILSRARESIKEI---FKLKVDIFQELL 152
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P+H VL+ +K +LL +Y
Sbjct: 153 VNITKHVLKPKHEVLSAAQKAKLLKQY 179
>gi|224053296|ref|XP_002297750.1| predicted protein [Populus trichocarpa]
gi|222845008|gb|EEE82555.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 81/147 (55%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY V EL+++L +F+ FG+ P S V+ P + V F
Sbjct: 47 LEMLKDRGYDVLDSELNRSLTEFRSVFGNSPDLDSLRFS-----VSLRSIPHKKTLVMFL 101
Query: 61 DEPKIGIKTIKT-YCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
+I I+T Y Q + +E++H I+++Q+ M AK+ L K +E F ++LL
Sbjct: 102 GTDEIKTANIRTVYGQILNKESLHGLILILQSKMNHFAKKELEKFPFK--VEVFQITDLL 159
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P+ +LT E+KQ+++ +Y
Sbjct: 160 VNITKHVLQPQMDILTAEQKQQVMNKY 186
>gi|402467370|gb|EJW02677.1| hypothetical protein EDEG_02909 [Edhazardia aedis USNM 41457]
Length = 200
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 79/143 (55%), Gaps = 8/143 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY+ + +L +F ++ + + RS + +LV H+ +Q+ F
Sbjct: 16 IEMLQDRGYISNRTTKSLSLQEFMHEYSNALQD----RSTIKMLVLHSK-TNEQLVCHFF 70
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DE K+G+K +K + + + I ++V + G++P+ + + + +E F E ELL
Sbjct: 71 DEAKVGLKALKLTIEGILSQKIENVVLVCKEGLSPAGAKFVAEFKN---VEVFKEKELLF 127
Query: 121 NITEHELVPEHIVLTPEEKQELL 143
N+T+H LVP+H +L EEK +LL
Sbjct: 128 NVTKHMLVPKHRILEYEEKCKLL 150
>gi|300120101|emb|CBK19655.2| DNA-directed RNA polymerase II [Blastocystis hominis]
Length = 215
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ RGY ++ + TLD F + + D +E P +L ++ +D D++ VFF
Sbjct: 21 KMLSKRGYAISDKDQSMTLDTFVKDYCD--AETNPDLLKLTIISRKTEDEDDRVVVFFIR 78
Query: 62 --EPKIGIKTIKTYCQRMQ-EETIHRAIIVVQTGMTPSAKQSLVDMAPK-YILEYFLESE 117
+ KI K ++ +++ EE + R I+V +T AK+ + K I+E F E E
Sbjct: 79 SVDKKINGKDFESKIEKVSSEENVKRIILVFGGELTSEAKKKANSASKKNLIVESFQEDE 138
Query: 118 LLINITEHELVPEHIVLTPEEKQELLTRY 146
L+++ITEHELVPEH +L P+EK +LL +Y
Sbjct: 139 LVVDITEHELVPEHQLLKPQEKADLLKQY 167
>gi|414588639|tpg|DAA39210.1| TPA: DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 263
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 84/146 (57%), Gaps = 6/146 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY V ++EL +TL +F+ + +P +R A S + DP+ ++ V F
Sbjct: 77 LEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTL-----TSDPSSKVKVVFC 131
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+ I I+ +++E + R I+++Q + + ++S+ ++ ++ ++ F +ELL+
Sbjct: 132 PPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEIF-RFKVDTFQITELLV 190
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+H L P+H VLT E K +LL Y
Sbjct: 191 NITKHVLKPKHEVLTAEGKAKLLKEY 216
>gi|322706717|gb|EFY98297.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Metarhizium
anisopliae ARSEF 23]
Length = 232
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 28/167 (16%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKE--------------QFGDKPSE-----KRPARSELI 42
++ DR Y + ++E++ +LD+F++ QF +PS+ P +E
Sbjct: 25 EMVADREYELAEEEVNISLDRFRDEYCNPDGSVNRSKLQFSARPSDAMLKKNTPPATE-- 82
Query: 43 VLVAHNDDPTDQ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQ 99
N DP ++V F + + G+ I+ + + I+V ++P+A++
Sbjct: 83 ----SNPDPVPDCGPVWVEFLTDKQFGVGQIRQFAKYTISNNYKTGIMVTHVPLSPAARK 138
Query: 100 SLVDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
SL + +E FLE +LL+NIT HELVP H++L+ +EK LL RY
Sbjct: 139 SLASVENLAKIECFLEDDLLVNITHHELVPRHVLLSRDEKSALLKRY 185
>gi|401404940|ref|XP_003881920.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Neospora caninum Liverpool]
gi|325116334|emb|CBZ51887.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Neospora caninum Liverpool]
Length = 150
Score = 72.8 bits (177), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 41 LIVLVAHNDDPTDQMFVFFPDE-PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQ 99
++++ +H DP +++ V+F DE K G+K I+ +RM+E I RAI+V Q +T A+
Sbjct: 1 MLLVASHKVDPDNRVIVYFADETKKTGVKPIRELTERMEERNIQRAILVTQNVLTAFARD 60
Query: 100 SLVDMAPKYILEYFLESELLI 120
++ + AP++I+E F+ESELL+
Sbjct: 61 AISEAAPRHIIENFMESELLV 81
>gi|15230206|ref|NP_191267.1| rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana]
gi|6911878|emb|CAB72178.1| putative protein [Arabidopsis thaliana]
gi|26452919|dbj|BAC43537.1| unknown protein [Arabidopsis thaliana]
gi|28973011|gb|AAO63830.1| unknown protein [Arabidopsis thaliana]
gi|332646091|gb|AEE79612.1| rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana]
Length = 222
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 81/147 (55%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ DRGY V+ ++++ +L F+ +G++P R S L H D T ++ + F
Sbjct: 36 LQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISAL-----HRSDSTKKVKIVFF 90
Query: 61 DEPKIGIKTIKTYCQR-MQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
+ + I++ + +ETI I+V+Q +T A +++ + K +E F ++LL
Sbjct: 91 GTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFK--VEIFQITDLL 148
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P+H VL EEK LL ++
Sbjct: 149 VNITKHSLKPQHQVLNDEEKTTLLKKF 175
>gi|297739911|emb|CBI30093.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 87/149 (58%), Gaps = 12/149 (8%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFF- 59
+++ DRGY + ++D +L F+ + KP R L + A DP+ ++ V F
Sbjct: 144 LEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDR-----LRISAALRSDPSKKILVIFC 198
Query: 60 -PDEPKI-GIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESE 117
PD K+ I++I T Q + ++++ + I+V+Q +T A ++ VD+ + +E F ++
Sbjct: 199 GPDVVKVNAIRSIAT--QIVNKDSLSKLILVLQNHITSQALKA-VDLFS-FQVEKFQITD 254
Query: 118 LLINITEHELVPEHIVLTPEEKQELLTRY 146
LL+NIT+H L P+H VLT +EK +LL +Y
Sbjct: 255 LLVNITKHVLKPKHRVLTDQEKNKLLKKY 283
>gi|21617912|gb|AAM66962.1| putative DNA-directed RNA polymerase 23kD subunit [Arabidopsis
thaliana]
Length = 222
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 81/147 (55%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ DRGY V+ ++++ +L F+ +G++P R S L H D T ++ + F
Sbjct: 36 LQILRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISAL-----HRSDSTKKVKIVFF 90
Query: 61 DEPKIGIKTIKTYCQR-MQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
+ + I++ + +ETI I+V+Q +T A +++ + K +E F ++LL
Sbjct: 91 GTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFK--VEIFQITDLL 148
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P+H VL EEK LL ++
Sbjct: 149 VNITKHSLKPQHQVLNDEEKTTLLKKF 175
>gi|195635599|gb|ACG37268.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Zea mays]
Length = 264
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 84/146 (57%), Gaps = 6/146 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY V ++EL +TL +F+ + +P +R A S + DP+ ++ V F
Sbjct: 78 LEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTLA-----SDPSSKVKVVFC 132
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+ I I+ +++E + R I+++Q + + ++S+ ++ ++ ++ F +ELL+
Sbjct: 133 PPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEIF-RFKVDTFQITELLV 191
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+H L P+H VLT E K +LL Y
Sbjct: 192 NITKHVLKPKHEVLTAEGKAKLLKEY 217
>gi|226491902|ref|NP_001141853.1| uncharacterized protein LOC100273995 [Zea mays]
gi|194706176|gb|ACF87172.1| unknown [Zea mays]
Length = 248
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 84/146 (57%), Gaps = 6/146 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY V ++EL +TL +F+ + +P +R A S + DP+ ++ V F
Sbjct: 62 LEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTL-----TSDPSSKVKVVFC 116
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+ I I+ +++E + R I+++Q + + ++S+ ++ ++ ++ F +ELL+
Sbjct: 117 PPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEIF-RFKVDTFQITELLV 175
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+H L P+H VLT E K +LL Y
Sbjct: 176 NITKHVLKPKHEVLTAEGKAKLLKEY 201
>gi|336471719|gb|EGO59880.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
tetrasperma FGSC 2508]
gi|350292835|gb|EGZ74030.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
tetrasperma FGSC 2509]
Length = 234
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 17/162 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPS---------EKRPARSELIVLVA----HN 48
++ DRGY +++DE+ +L++FK ++ ++ RP+ + + A N
Sbjct: 26 EMVQDRGYELSEDEVKISLERFKAEYTNEDGTPNRAKLQFSARPSEAMIKKFTAPPTPSN 85
Query: 49 DDPTDQ---MFVFFPDEP-KIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
+P + ++V F E IG+ +K + + I + ++ A++ +
Sbjct: 86 PNPVPECGTIWVEFCTEKGSIGVSVMKKFVTHCSDNKFKAGIFITAVPLSAQARKVMSVT 145
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ +E FLE +LL+NIT HELVP+H++L+ EEK LL RY
Sbjct: 146 SQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLKRY 187
>gi|359482221|ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 229
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 87/149 (58%), Gaps = 12/149 (8%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFF- 59
+++ DRGY + ++D +L F+ + KP R L + A DP+ ++ V F
Sbjct: 43 LEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDR-----LRISAALRSDPSKKILVIFC 97
Query: 60 -PDEPKI-GIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESE 117
PD K+ I++I T Q + ++++ + I+V+Q +T A ++ VD+ + +E F ++
Sbjct: 98 GPDVVKVNAIRSIAT--QIVNKDSLSKLILVLQNHITSQALKA-VDLFS-FQVEKFQITD 153
Query: 118 LLINITEHELVPEHIVLTPEEKQELLTRY 146
LL+NIT+H L P+H VLT +EK +LL +Y
Sbjct: 154 LLVNITKHVLKPKHRVLTDQEKNKLLKKY 182
>gi|85105978|ref|XP_962076.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
crassa OR74A]
gi|28923670|gb|EAA32840.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
crassa OR74A]
Length = 234
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 17/162 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPS---------EKRPARSELIVLVA----HN 48
++ DRGY + +DE+ +L++FK ++ ++ RP+ + + A N
Sbjct: 26 EMVQDRGYELAEDEVKISLERFKAEYTNEDGTPNRAKLQFSARPSEAMIKKFTAPPTPSN 85
Query: 49 DDPTDQ---MFVFFPDEP-KIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
+P + ++V F E IG+ +K + + I + ++ A++ +
Sbjct: 86 PNPVPECGTIWVEFCTEKGSIGVSVMKKFVTHCSDNKFKAGIFITAVPLSAQARKVMSVT 145
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ +E FLE +LL+NIT HELVP+H++L+ EEK LL RY
Sbjct: 146 SQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLKRY 187
>gi|414586667|tpg|DAA37238.1| TPA: hypothetical protein ZEAMMB73_455773 [Zea mays]
Length = 117
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 51/70 (72%)
Query: 77 MQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELVPEHIVLTP 136
M+ E + I+VVQ ++ A+ ++ +++ KY LE F E+ELL+NI +H LVPEH++LTP
Sbjct: 1 MKNENVFAGILVVQQALSAFARSAVQEVSQKYHLEVFQEAELLVNIKDHVLVPEHVLLTP 60
Query: 137 EEKQELLTRY 146
E+K+ LL RY
Sbjct: 61 EDKKTLLERY 70
>gi|302894285|ref|XP_003046023.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256726950|gb|EEU40310.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 234
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 16/161 (9%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSE---------KRPARSELIVLV----AHN 48
++ DR Y + ++E+ +LD+F++++ + RP+ S L A
Sbjct: 27 EMVADREYELAEEEVKISLDRFRDEYCNPDGSINRAKLQFSARPSESMLRKFTPPATADK 86
Query: 49 DDPTDQ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMA 105
DP ++V F + G+ I+ + + I+V ++P+A++SL +
Sbjct: 87 PDPVPDCGPIWVEFLADKTFGVSQIRQFATYVITNHYKTGIMVTHVPLSPAARKSLASVE 146
Query: 106 PKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+E FLE +LL+NIT HELVP+H++L+ +EK LL RY
Sbjct: 147 SLAKIECFLEDDLLVNITHHELVPKHVLLSRDEKTALLKRY 187
>gi|116196520|ref|XP_001224072.1| hypothetical protein CHGG_04858 [Chaetomium globosum CBS 148.51]
gi|88180771|gb|EAQ88239.1| hypothetical protein CHGG_04858 [Chaetomium globosum CBS 148.51]
Length = 220
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 17/155 (10%)
Query: 9 YLVTQDELDQTLDQF--------------KEQFGDKPSE---KRPARSELIVLVAHNDDP 51
Y + +DE+ +LD+F K QF +PSE K+ +
Sbjct: 19 YELAEDEVKISLDRFRLEYTNDDGSPNRSKMQFSARPSESMIKKFTPPPTPSNPDPAPEC 78
Query: 52 TDQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
F P++ IGI +K + + I+V ++ A++ + + ++E
Sbjct: 79 GTIWVEFCPEKASIGINVMKKFVEHCGTNNFKAGILVTAVALSAQARKVMTVTSQYTLIE 138
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
FLE +LL+NIT HELVP+H++L+ EEK LL RY
Sbjct: 139 CFLEEDLLVNITHHELVPKHVLLSREEKTALLKRY 173
>gi|8896071|gb|AAF81222.1| RPB5d [Brassica napus]
Length = 223
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 81/147 (55%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M++ DRGY ++ ++++ TL +F+ +GD+P+ R L + H D + ++ V F
Sbjct: 36 MEMLRDRGYDISNEDINLTLQEFRALYGDRPNVDR-----LRISAQHCSDSSKKIAVVFC 90
Query: 61 DEPKIGIKTIKTYCQR-MQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
+ + I+ + E + I+V+Q+ +T A +++ + K +E F +ELL
Sbjct: 91 GSGIVKVSAIRDIAADVLGRENLTGLILVLQSDITNQALKAVELFSFK--VELFQLTELL 148
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P+H VL +EK+ L ++
Sbjct: 149 VNITKHVLRPKHHVLNEQEKESLFKKF 175
>gi|336267790|ref|XP_003348660.1| hypothetical protein SMAC_01684 [Sordaria macrospora k-hell]
gi|380093918|emb|CCC08134.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 234
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 17/162 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPS---------EKRPARSELIVLVA----HN 48
++ DRGY + +DE+ +L++FK ++ ++ RP+ + + A N
Sbjct: 26 EMVQDRGYELAEDEVKISLERFKLEYTNEDGTPNRGKLQFSARPSEAMIKKFTAPPTPSN 85
Query: 49 DDPTDQ---MFVFFPDEP-KIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
+P + ++V F E IG+ +K + + I + ++ A++ +
Sbjct: 86 PNPAPECGTIWVEFCTEKGSIGVSVMKKFVTHCSDNKFKAGIFITAVPLSAQARKVMSVT 145
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ +E FLE +LL+NIT HELVP+H++L+ EEK LL RY
Sbjct: 146 SQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLKRY 187
>gi|440494631|gb|ELQ76996.1| RNA polymerase, 25-kDa subunit (common to polymerases I, II and
III) [Trachipleistophora hominis]
Length = 197
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 82/143 (57%), Gaps = 10/143 (6%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY V + +++ D F ++ + + R ++ D + +FVFF
Sbjct: 15 LEMLSDRGYSVKEYQVND-YDDFVNKYPNCVKDTTNLR-----IIVQKD--KEMLFVFFS 66
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DE K+ +K++K + M+++ I I+V++ G++P+A + ++ P I F E ELL
Sbjct: 67 DEEKMSLKSVKILVENMEKQNIKNLILVLREGISPAANKFALE-CPMNI-TIFKEKELLF 124
Query: 121 NITEHELVPEHIVLTPEEKQELL 143
N+T+H LV +H +++ EEK+ L+
Sbjct: 125 NVTKHSLVFKHRIISVEEKERLM 147
>gi|297817026|ref|XP_002876396.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297322234|gb|EFH52655.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 222
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 82/147 (55%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ DRGY V+ ++++ +L F+ +G++P R L + H D + ++ V F
Sbjct: 36 LQMLRDRGYQVSDEDINLSLHDFRAVYGERPDVDR-----LRISAQHRSDSSKKVKVVFF 90
Query: 61 DEPKIGIKTIKTYCQR-MQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
+ + I++ + +ET+ I+V+Q+ +T A +++ + K +E F ++LL
Sbjct: 91 GTGMVKVNAIRSIAADVLSQETVTGLILVLQSQVTKQAMKAIELFSFK--VEIFQITDLL 148
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P+H VL +EK LL ++
Sbjct: 149 VNITKHALKPQHRVLNDKEKTTLLKKF 175
>gi|224139746|ref|XP_002323257.1| predicted protein [Populus trichocarpa]
gi|222867887|gb|EEF05018.1| predicted protein [Populus trichocarpa]
Length = 216
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 10/148 (6%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVA-HNDDPTDQMFVFF 59
+++ DRGY V E+D +L F+ +G P EL+ A H DP+ +M V F
Sbjct: 30 LEMLKDRGYSVPSSEIDISLQDFRGVYGQNPD------IELLKFSATHKSDPSKRMLVIF 83
Query: 60 PDEPKIGIKTIKTY-CQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESEL 118
+ + I+ Q +++ I+V+Q +T A ++L D+ K+ +E F ++L
Sbjct: 84 CGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQAMKAL-DLF-KFKIEIFQITDL 141
Query: 119 LINITEHELVPEHIVLTPEEKQELLTRY 146
L+NIT+H L P+H VL+ + KQ LL +Y
Sbjct: 142 LVNITKHILKPKHQVLSEQAKQRLLKKY 169
>gi|346325153|gb|EGX94750.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Cordyceps
militaris CM01]
Length = 334
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 55 MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFL 114
++V F + + G+ I+ + + I+V ++P+A++SL + +E FL
Sbjct: 138 IWVEFLADKQFGVAQIRQFAKYTITNHYKTGIMVTHVALSPAARKSLASVENLAKIECFL 197
Query: 115 ESELLINITEHELVPEHIVLTPEEKQELLTRY 146
E +LL+NIT HELVP H++L+ EEK LL RY
Sbjct: 198 EDDLLVNITHHELVPRHVLLSREEKIALLKRY 229
>gi|440470981|gb|ELQ40020.1| DNA-directed RNA polymerases I [Magnaporthe oryzae Y34]
gi|440484880|gb|ELQ64891.1| DNA-directed RNA polymerases I [Magnaporthe oryzae P131]
Length = 259
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 17/162 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSE---------KRPARSELIV-------LV 45
Q+ DRGY ++++E + ++++F F D RP+ + L +
Sbjct: 22 QMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFSARPSDAMLKLHARIPTPTD 81
Query: 46 AHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSL-VDM 104
++V F +E KIG+ K + + + + I+V Q ++ A+++L
Sbjct: 82 PDPAPDCGSIWVEFINEEKIGVGRTKQFVEVLLQSGFRDGILVTQGALSSGARRALSATG 141
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ +E F+ +LL+NIT HELVP+H++L+ EK+ LL RY
Sbjct: 142 SGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLERY 183
>gi|389628590|ref|XP_003711948.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
gi|351644280|gb|EHA52141.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
Length = 230
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 17/162 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSE---------KRPARSELIV-------LV 45
Q+ DRGY ++++E + ++++F F D RP+ + L +
Sbjct: 22 QMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFSARPSDAMLKLHARIPTPTD 81
Query: 46 AHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSL-VDM 104
++V F +E KIG+ K + + + + I+V Q ++ A+++L
Sbjct: 82 PDPAPDCGSIWVEFINEEKIGVGRTKQFVEVLLQSGFRDGILVTQGALSSGARRALSATG 141
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ +E F+ +LL+NIT HELVP+H++L+ EK+ LL RY
Sbjct: 142 SGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLERY 183
>gi|68074989|ref|XP_679411.1| DNA-directed RNA polymerase 2 [Plasmodium berghei strain ANKA]
gi|56500155|emb|CAI00595.1| DNA-directed RNA polymerase 2, putative [Plasmodium berghei]
Length = 107
Score = 68.6 bits (166), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY++T E + FKE F E RS + ++ +H +D +++ V+F D
Sbjct: 17 EMLEDRGYIITAREKLENFAAFKELF----EENEKLRSRMTIITSHKNDANNKIIVYFVD 72
Query: 62 E-PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTP 95
E K G+K ++ ++M E++I RAI+V Q +TP
Sbjct: 73 EVKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTP 107
>gi|322700991|gb|EFY92743.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Metarhizium
acridum CQMa 102]
Length = 250
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 28/160 (17%)
Query: 9 YLVTQDELDQTLDQFKE--------------QFGDKPSE-----KRPARSELIVLVAHND 49
Y + ++E++ +LD+F++ QF +PS+ P +E N
Sbjct: 50 YELAEEEVNISLDRFRDEYCNPDGSVNRSKLQFSARPSDAMLKKNTPPATE------SNP 103
Query: 50 DPTDQ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAP 106
DP ++V F + + G+ I+ + + I+V ++P+A++SL +
Sbjct: 104 DPIPDCGPVWVEFLTDKQFGVGQIRQFAKYTISNNYKTGIMVTHVPLSPAARKSLASVEN 163
Query: 107 KYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+E FLE +LL+NIT HELVP H++L+ +EK LL RY
Sbjct: 164 LAKIECFLEDDLLVNITHHELVPRHVLLSRDEKSALLKRY 203
>gi|453084450|gb|EMF12494.1| RNA polymerase subunit [Mycosphaerella populorum SO2202]
Length = 170
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 55 MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFL 114
+ V F +E +GIK +K + Q + E+ + I V Q T +A + + + P ++E F
Sbjct: 33 IHVEFANETSVGIKHLKQFAQELSEKNYYTGIYVSQVAPTSAALKIIPSVLPT-VMEIFR 91
Query: 115 ESELLINITEHELVPEHIVLTPEEKQELLTRY 146
E +LL+NI++HELVP+HI L+ EEK+ LL RY
Sbjct: 92 EEDLLVNISKHELVPKHIPLSQEEKRGLLERY 123
>gi|357509489|ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|124359979|gb|ABN07995.1| RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal
[Medicago truncatula]
gi|355500048|gb|AES81251.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 248
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 80/147 (54%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY + DE+ +LD F++ G P R L + H +P+ ++ V F
Sbjct: 62 LEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDR-----LRLTATHATNPSKRILVVFS 116
Query: 61 DEPKIGIKTIKTYC-QRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
+ + ++ Q + E++ I++VQ +T A +++ ++ K +E F ++LL
Sbjct: 117 GPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFK--VEIFQITDLL 174
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+N T+H L P+H VLT ++K+ LL +Y
Sbjct: 175 VNATKHVLKPKHQVLTDKQKKNLLKKY 201
>gi|15232524|ref|NP_191013.1| RNA polymerase II fifth largest subunit, E [Arabidopsis thaliana]
gi|7258352|emb|CAB77569.1| RNA polymerase 24kDa subunit-like protein [Arabidopsis thaliana]
gi|332645717|gb|AEE79238.1| RNA polymerase II fifth largest subunit, E [Arabidopsis thaliana]
Length = 233
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 8/146 (5%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY V + EL TL +F+ FG+KP +R L + V DP ++ V F
Sbjct: 48 EMLRDRGYEVNEAELSLTLSEFRSVFGEKPELER-----LRICVPLRSDPKKKILVVFMG 102
Query: 62 EPKIGIKTIKT-YCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
I +K+++ + Q +H I+V+Q+ M A+++L + +E F +LL+
Sbjct: 103 TEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTFP--FTVETFPIEDLLV 160
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+H P+ +L EEK++LL ++
Sbjct: 161 NITKHIQQPKIEILNKEEKEQLLRKH 186
>gi|11994623|dbj|BAB02760.1| RNA polymerase-like protein [Arabidopsis thaliana]
Length = 178
Score = 67.4 bits (163), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 39/148 (26%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DRGYL+ E+ TL++F E++GD S+L ++
Sbjct: 19 MQMLKDRGYLIDGSEITMTLEEFIEKYGDNMKRSLLLLSKLRKMM--------------- 63
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMA---PKYILEYFLESE 117
T+ RAI+VVQ + ++Q+LV + P + +E F E E
Sbjct: 64 --------------------TMIRAILVVQD-IKAFSRQALVFLGAVYPIFHIEVFQEKE 102
Query: 118 LLINITEHELVPEHIVLTPEEKQELLTR 145
L++N+ EH VPEH LT EEKQ+ L R
Sbjct: 103 LIVNVKEHVFVPEHQALTTEEKQKFLER 130
>gi|356541565|ref|XP_003539245.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Glycine max]
Length = 214
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 82/148 (55%), Gaps = 9/148 (6%)
Query: 1 MQLCHDRGYLVTQD-ELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFF 59
+++ DRGY V Q L +L +F+ +FG P+ + L V+H +P++ + V F
Sbjct: 27 LEMLQDRGYDVVQHANLSPSLAEFRSRFGQNPNPQ-----TLAFCVSHLSNPSNTVQVVF 81
Query: 60 PDEPKIGIKTIKTYCQRMQEE-TIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESEL 118
I T+ C ++ ++ + I+VVQ+ MT AK+ L + K +E +L
Sbjct: 82 AGTDDIRKGTVNEICTQIADKGRLKGLILVVQSKMTSFAKKDLESLPFK--VEIIRIDDL 139
Query: 119 LINITEHELVPEHIVLTPEEKQELLTRY 146
L+NIT+H L P++ +LT +EK+ LLT++
Sbjct: 140 LVNITKHVLQPKYEILTDDEKKALLTKH 167
>gi|428177456|gb|EKX46336.1| hypothetical protein GUITHDRAFT_163048 [Guillardia theta CCMP2712]
Length = 231
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 25/162 (15%)
Query: 6 DRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFV-------- 57
DRG+ VT + +T+ QFKE D+ P L+ + +H + Q +
Sbjct: 27 DRGFKVTNENKSETIVQFKETCTDRGHILDPG---LLTMRSHRVENEKQRIMVLFCGRKD 83
Query: 58 -FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYI------- 109
F D+ K I + Q E++ A++++ +T AK+ LV K
Sbjct: 84 KFVTDDAKYVFSCIDDEWKNTQAESLT-AVVIIHKNLTSYAKRFLVTEHQKRYHGGGEGP 142
Query: 110 -----LEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
L F E EL++NITEHE+VP+H +++ EK++LL RY
Sbjct: 143 RMKIELNIFFEVELVVNITEHEMVPKHRIMSGVEKKKLLQRY 184
>gi|297824079|ref|XP_002879922.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297325761|gb|EFH56181.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 218
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 82/147 (55%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M++ DRGY V+ ++++ +L+QF+ +G++ R L + H D + ++ V F
Sbjct: 32 MEMLRDRGYDVSDEDVNFSLEQFRALYGERLDVDR-----LRISAKHRFDSSKKIMVVFC 86
Query: 61 DEPKIGIKTIKTYCQR-MQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
+ + ++ + E+I I+V+Q+ +T A +++ + K +E F ++LL
Sbjct: 87 GTGMVKVNAMRAIAADVLNRESITGLILVLQSHITNQALKAVELFSFK--VELFEITDLL 144
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+N+T+H L P+H VL +EK+ LL +Y
Sbjct: 145 VNVTKHVLRPKHQVLNDKEKESLLKKY 171
>gi|388510192|gb|AFK43162.1| unknown [Medicago truncatula]
Length = 248
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 79/147 (53%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY + DE+ +LD F++ G P R L + H +P+ ++ V F
Sbjct: 62 LEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDR-----LRLTATHATNPSKRILVVFS 116
Query: 61 DEPKIGIKTIKTYC-QRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
+ + ++ Q + E++ I++VQ +T A +++ ++ K +E ++LL
Sbjct: 117 GPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFK--VEILQITDLL 174
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+N T+H L P+H VLT ++K+ LL +Y
Sbjct: 175 VNATKHVLKPKHQVLTDKQKKNLLKKY 201
>gi|195606570|gb|ACG25115.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Zea mays]
Length = 154
Score = 64.3 bits (155), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY V ++EL +TL +F+ E P L DP+ ++ V F
Sbjct: 21 LEMLXDRGYAVPEEELARTLPEFRAW-----XEYXPELERLAFXTTLTSDPSSKVKVVFC 75
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+ I I+ +++E + R I+++Q + ++S+ ++ ++ ++ F +ELL+
Sbjct: 76 PPGPVKIAAIRLIYTEVKDENLARLILILQGKIMSPTRESIKEIF-RFKVDTFQITELLV 134
Query: 121 NITEHELVPEHIVLTPEEK 139
NIT+H L P+H VLT E K
Sbjct: 135 NITKHVLKPKHEVLTAEGK 153
>gi|90954539|emb|CAJ44464.1| RNA polymerase subunit 2RPB5 [Trypanosoma brucei brucei]
gi|261333514|emb|CBH16509.1| DNA-directed RNA polymerases II subunit,putative [Trypanosoma
brucei gambiense DAL972]
Length = 219
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAH-NDDPTDQMFVFFP 60
++ DR Y V + +T+ QF EQ+ D+ KR R + V + VFF
Sbjct: 27 EMMRDRKYQVPSSIIPETVGQFCEQYVDREG-KRIYRERMTVPCERVGGTHRSRAMVFFA 85
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPK----YILEYFLES 116
E +G++ +K YCQ + R IIV + + K+ VD + ++ F E
Sbjct: 86 SE--LGMEGMKGYCQTAMDANCERVIIVTHGKVNATVKR-YVDCINRSGTGQKVQLFDED 142
Query: 117 ELLINITEHELVPEHIVLTPEEKQELL 143
+L++NIT HELVP+H L EE +E+L
Sbjct: 143 DLVVNITHHELVPKHTQLEDEEVKEML 169
>gi|303389965|ref|XP_003073214.1| DNA-directed RNA polymerase I [Encephalitozoon intestinalis ATCC
50506]
gi|303302359|gb|ADM11854.1| DNA-directed RNA polymerase I [Encephalitozoon intestinalis ATCC
50506]
Length = 214
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 78/143 (54%), Gaps = 10/143 (6%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY TQ+ QTLD+F E++ ++ RS L + + P + F
Sbjct: 30 IEMIKDRGYTTTQEV--QTLDEFHEKYPFALTK----RSTLNFVCVDTNRPVA---IHFG 80
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ K+G K + + +++ I I+++ +P+ S++ + PK+ +E FL E++
Sbjct: 81 EDEKMGKKVFEGLLTQYEKDNIFHLILILPLAPSPTV-MSMISLNPKFCIEIFLVEEMIF 139
Query: 121 NITEHELVPEHIVLTPEEKQELL 143
N T+H VP H +L+ EEK+++
Sbjct: 140 NKTKHSWVPPHRILSREEKEKVF 162
>gi|71748956|ref|XP_827817.1| DNA-directed RNA polymerases II subunit [Trypanosoma brucei
TREU927]
gi|70833201|gb|EAN78705.1| DNA-directed RNA polymerases II subunit, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 219
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAH-NDDPTDQMFVFFP 60
++ DR Y V + +T+ QF EQ+ D+ +R R + V + VFF
Sbjct: 27 EMMRDRKYQVPSSIIPETVGQFCEQYVDREG-RRIYRERMTVPCERVGGTHRSRAMVFFA 85
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPK----YILEYFLES 116
E +G++ +K YCQ + R IIV + + K+ VD + ++ F E
Sbjct: 86 SE--LGMEGMKGYCQTAMDANCERVIIVTHGKVNATVKR-YVDCINRSGTGQKVQLFDED 142
Query: 117 ELLINITEHELVPEHIVLTPEEKQELL 143
+L++NIT HELVP+H L EE +E+L
Sbjct: 143 DLVVNITHHELVPKHTQLEDEEVKEML 169
>gi|147776024|emb|CAN60800.1| hypothetical protein VITISV_022856 [Vitis vinifera]
Length = 162
Score = 63.2 bits (152), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 46 AHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMA 105
+H + V F +I I+ Q++ E +HR I+V+Q+ M A++ +VD
Sbjct: 17 SHEITKLHMILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHARK-VVDEY 75
Query: 106 PKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P + E+F +ELLINIT+H VP+H +L+ +EK++L+ +Y
Sbjct: 76 PIKV-EFFQITELLINITKHVSVPKHEILSAQEKRKLVNKY 115
>gi|351723899|ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycine max]
gi|255627335|gb|ACU14012.1| unknown [Glycine max]
Length = 237
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY + E+D +L F++ G P R S + H + + ++ V F
Sbjct: 51 LEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPDPDRLRLS-----LTHATNSSKRILVIFC 105
Query: 61 DEPKIGIKTIK-TYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
+ + I+ T Q + +T+ I++V+ +T A +++ + K +E F ++LL
Sbjct: 106 GPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQALKAVNLFSFK--VEIFQITDLL 163
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P+H VLT ++K LL +Y
Sbjct: 164 VNITKHVLKPKHQVLTDKQKINLLKKY 190
>gi|429965029|gb|ELA47026.1| hypothetical protein VCUG_01471 [Vavraia culicis 'floridensis']
Length = 223
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 79/135 (58%), Gaps = 10/135 (7%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY + + ++ + D+F ++ PS + S L ++V + + +FVFF
Sbjct: 41 LEMLSDRGYPIKEYQM-KDYDEFVNKY---PSCVKDT-SNLRIIVQKDKE---MLFVFFS 92
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DE K+ +K +K + ++++ I I+V++ G++P+A + ++ P I F E ELL
Sbjct: 93 DEEKMSLKNVKILVENIEKQNIKNLIVVLREGISPAASKFALE-CPVNI-TIFKEKELLF 150
Query: 121 NITEHELVPEHIVLT 135
N+T+H LV +H ++T
Sbjct: 151 NVTKHSLVFKHRIIT 165
>gi|300701817|ref|XP_002995033.1| hypothetical protein NCER_102232 [Nosema ceranae BRL01]
gi|239603668|gb|EEQ81362.1| hypothetical protein NCER_102232 [Nosema ceranae BRL01]
Length = 204
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 11/145 (7%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++C +RGY T D+ + D F QF PS + S I V N D + + + F
Sbjct: 16 VEMCTERGY--TTDQKVLSYDNFIAQF---PSCDKDVNS--INFVCKNAD--NLVGIHFI 66
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
D+ KIG +I+ + + I+ I+V+ M+ SA Q++V+++ I E F + EL+
Sbjct: 67 DDEKIGKSSIEKVIETYKSINIYHLILVINQKMS-SASQNIVNVSDLKI-EIFKDEELMF 124
Query: 121 NITEHELVPEHIVLTPEEKQELLTR 145
NIT+H VP H +L EK +L +
Sbjct: 125 NITKHVSVPRHRILNDTEKNSILEK 149
>gi|15227327|ref|NP_181665.1| RNA polymerase II fifth largest subunit, D [Arabidopsis thaliana]
gi|3894190|gb|AAC78539.1| putative DNA-directed RNA polymerase 23kD subunit [Arabidopsis
thaliana]
gi|19310385|gb|AAL84932.1| At2g41340/F13H10.11 [Arabidopsis thaliana]
gi|330254867|gb|AEC09961.1| RNA polymerase II fifth largest subunit, D [Arabidopsis thaliana]
Length = 218
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 82/148 (55%), Gaps = 10/148 (6%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVA-HNDDPTDQMFVFF 59
M++ DRGY V+ ++++ +L QF+ +G+ P +L+ + A H D + ++ V F
Sbjct: 32 MEMLRDRGYDVSDEDINLSLQQFRALYGEHPD------VDLLRISAKHRFDSSKKISVVF 85
Query: 60 PDEPKIGIKTIKTYCQR-MQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESEL 118
+ + ++ + E I I+V+Q+ +T A +++ + K +E F ++L
Sbjct: 86 CGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSFK--VELFEITDL 143
Query: 119 LINITEHELVPEHIVLTPEEKQELLTRY 146
L+N+++H L P+H VL +EK+ LL ++
Sbjct: 144 LVNVSKHVLRPKHQVLNDKEKESLLKKF 171
>gi|161899423|ref|XP_001712938.1| RNA polymerase I, II and III [Bigelowiella natans]
gi|75756432|gb|ABA27326.1| RNA polymerase I, II and III [Bigelowiella natans]
Length = 204
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 75/145 (51%), Gaps = 5/145 (3%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ + RGY V + L+ QFK++ +K KR +S ++ H +D +++ F+ +
Sbjct: 18 EMLYRRGYYVEKKVLNLNYSQFKKKCIEK---KRYFKS--FKIINHLNDTNNKIIGFYNN 72
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
+ I + + ++ + + I + + ++ +L + +E F E E+LIN
Sbjct: 73 KGLIDVNYLGLKIEKAKTNNSNSIIFITKRYLSKQTNIALSHFRRNFNIEIFFEYEILIN 132
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
+H LVP+H++L P+ K+++L Y
Sbjct: 133 PIKHFLVPKHVLLAPDIKRKILKSY 157
>gi|380495005|emb|CCF32725.1| DNA-directed RNA polymerase II polypeptide [Colletotrichum
higginsianum]
Length = 107
Score = 60.5 bits (145), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 43/60 (71%)
Query: 87 IVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+V ++P+A++ L+ + +E FLE +LL+NIT+HELVP+HI+L+ EEK LL RY
Sbjct: 1 MVTHVPLSPAARKMLITIESFAKVECFLEEDLLVNITQHELVPKHILLSREEKVALLKRY 60
>gi|297816744|ref|XP_002876255.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297322093|gb|EFH52514.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 223
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 8/146 (5%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY V + EL TL +F+ FG+KP +R L + V DP ++ V F
Sbjct: 44 EMLRDRGYEVNEAELSLTLSEFRSVFGEKPDLER-----LRICVPLRSDPKKKILVVFMG 98
Query: 62 EPKIGIKTIKTYCQRMQEET-IHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
I +K+++ ++ ++ I+++Q+ M A + L + +E +LL+
Sbjct: 99 TEPITVKSVRAIHSQISNNVGVNAMILILQSKMNHFAHKELTTFP--FTVETIPIGDLLV 156
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI +H P+ +L EEK++LL ++
Sbjct: 157 NIAKHIQQPKIEILNKEEKEQLLRKH 182
>gi|15228284|ref|NP_188290.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332642330|gb|AEE75851.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 87
Score = 59.7 bits (143), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 70 IKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMA---PKYILEYFLESELLINITEHE 126
+K Y +++ + RAI+VVQ + ++Q+LV + P + +E F E EL++N+ EH
Sbjct: 1 MKKYIDQLKSANVFRAILVVQD-IKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHV 59
Query: 127 LVPEHIVLTPEEKQELLTR 145
VPEH LT EEKQ+ L R
Sbjct: 60 FVPEHQALTTEEKQKFLER 78
>gi|396081727|gb|AFN83342.1| DNA-directed RNA polymerase I [Encephalitozoon romaleae SJ-2008]
Length = 210
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 77/143 (53%), Gaps = 10/143 (6%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY TQ+ Q+L+ F E++ ++ RS L + D P + F
Sbjct: 26 IEMIKDRGYTTTQEV--QSLESFHERYPFALTK----RSTLNFVCVDVDRPVG---IHFG 76
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
D+ K+G K + + +++ I I+++ +P+ S++ + PK+ +E FL E++
Sbjct: 77 DDEKMGKKGFEGLLSQYEKDNIFHLILILPQFPSPTV-MSMISLNPKFNVEIFLVEEMVF 135
Query: 121 NITEHELVPEHIVLTPEEKQELL 143
N T+H VP H +L+ EEK+ +L
Sbjct: 136 NKTKHSWVPPHRILSREEKENVL 158
>gi|392512756|emb|CAD25628.2| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
Length = 202
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 76/143 (53%), Gaps = 10/143 (6%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY TQ+ L LD F E++ ++ RS L + + D P V F
Sbjct: 16 IEMVRDRGYTTTQEVL--ALDGFHERYPLALTK----RSTLNFVCVNVDRPVA---VHFG 66
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
D+ K+G K + + +++ + I+++ +P+ S++ + P++ +E FL EL+
Sbjct: 67 DDEKMGKKAFEGLLSQYEKDNMFHLILILPQLPSPTV-MSMIPLTPRFSIEIFLVEELIF 125
Query: 121 NITEHELVPEHIVLTPEEKQELL 143
N T+H VP H VL+ EE++ +
Sbjct: 126 NKTKHSWVPPHRVLSREERESVF 148
>gi|19074518|ref|NP_586024.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
gi|449329590|gb|AGE95861.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 212
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 76/143 (53%), Gaps = 10/143 (6%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY TQ+ L LD F E++ ++ RS L + + D P V F
Sbjct: 26 IEMVRDRGYTTTQEVL--ALDGFHERYPLALTK----RSTLNFVCVNVDRPVA---VHFG 76
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
D+ K+G K + + +++ + I+++ +P+ S++ + P++ +E FL EL+
Sbjct: 77 DDEKMGKKAFEGLLSQYEKDNMFHLILILPQLPSPTV-MSMIPLTPRFSIEIFLVEELIF 135
Query: 121 NITEHELVPEHIVLTPEEKQELL 143
N T+H VP H VL+ EE++ +
Sbjct: 136 NKTKHSWVPPHRVLSREERESVF 158
>gi|389749829|gb|EIM91000.1| DNA-directed RNA polymerase RPB5 subunit [Stereum hirsutum FP-91666
SS1]
Length = 175
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 37/145 (25%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+L DRGY V DE+ L F+ + + S R++L F
Sbjct: 21 ELVKDRGYQVADDEIHMDLSTFESHYAN--SAGSVDRNQL------------NFFTNLRV 66
Query: 62 EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLIN 121
P+I K I++ +I+ MTPSA++ +E F E++LL+
Sbjct: 67 NPQI-FKDIRS------------GVIIFPGIMTPSARK----------VEEFAEADLLVY 103
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
IT H+LVP H VLTPEEK+ +L RY
Sbjct: 104 ITHHKLVPRHDVLTPEEKKMVLERY 128
>gi|119587531|gb|EAW67127.1| hCG1640002 [Homo sapiens]
Length = 90
Score = 58.5 bits (140), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/43 (65%), Positives = 35/43 (81%)
Query: 104 MAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
MAPKYILE FL+ +LLI+ITE+ELVPE++V+T EE LL Y
Sbjct: 1 MAPKYILEQFLQQKLLIDITEYELVPEYVVMTKEEVTVLLALY 43
>gi|429961418|gb|ELA40963.1| hypothetical protein VICG_01993 [Vittaforma corneae ATCC 50505]
Length = 206
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 12/145 (8%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ ++RGY + LD F QF + +E P+ + V D P V F
Sbjct: 21 IEMLNERGYSSSNMPLDYA--SFVSQFPN--AENNPST---LNFVCSKDQP---FAVHFT 70
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
E K+ K+++T + I I++ + P+ K ++ + K LE+FL EL
Sbjct: 71 SEDKLSKKSLETLTNEYAAQGIANVILITSAKLNPACK--VLMKSIKLNLEHFLVEELQF 128
Query: 121 NITEHELVPEHIVLTPEEKQELLTR 145
NIT+H LVP+H +++ E++ELL +
Sbjct: 129 NITKHHLVPKHRIMSESEQKELLNK 153
>gi|342184881|emb|CCC94363.1| putative DNA-directed RNA polymerases II subunit [Trypanosoma
congolense IL3000]
Length = 219
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 9/147 (6%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAH-NDDPTDQMFVFFP 60
++ DR Y + +T++QF EQ+ D+ + + RS + + + VFF
Sbjct: 27 EMMRDRKYHFPTSLIPETVEQFCEQYVDRDT-REIFRSRMTLPCERVGGSQRGRAMVFFS 85
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPK----YILEYFLES 116
E +G++ +KTY Q + R IIVV + + + K+ VD + ++ F E
Sbjct: 86 VE--LGMEAMKTYYQSAMDAGCDRVIIVVHSKVNATVKR-YVDYINRSNTGAKVQLFDED 142
Query: 117 ELLINITEHELVPEHIVLTPEEKQELL 143
L++NIT HELVP+H L EE +E+L
Sbjct: 143 SLVVNITHHELVPKHTPLEDEEVREML 169
>gi|407846764|gb|EKG02755.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi]
Length = 219
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 3 LCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQM------- 55
+C DR Y V + ++++FK+ + D P E R + V P +++
Sbjct: 29 MC-DRKYQVADKIIPSSVEEFKDWYTD-PREGVIHRDRMTV-------PCERIGVSQRSR 79
Query: 56 -FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYI---LE 111
VFF + + ++T+K Y + E R IIVVQ + K+ + D+ + ++
Sbjct: 80 AMVFFSE--GLSMETMKRYHTQASEANCDRVIIVVQGRINAIVKRHVEDINRSSLGLKIQ 137
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELL 143
F E +L++NIT HELVP+H L EE +E+L
Sbjct: 138 LFDEDDLVVNITHHELVPKHTQLEDEEVKEML 169
>gi|71660313|ref|XP_821874.1| DNA-directed RNA polymerases II [Trypanosoma cruzi strain CL
Brener]
gi|71664576|ref|XP_819267.1| DNA-directed RNA polymerases II [Trypanosoma cruzi strain CL
Brener]
gi|19718719|gb|AAL96367.1|AC116314_4 Tcc44h21-2.4 [Trypanosoma cruzi]
gi|70884561|gb|EAN97416.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi]
gi|70887263|gb|EAO00023.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi]
Length = 219
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 3 LCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQM------- 55
+C DR Y V + ++++FK+ + D P E R + V P +++
Sbjct: 29 MC-DRKYQVADKIIPSSVEEFKDWYTD-PREGVIYRDRMTV-------PCERIGVSQRSR 79
Query: 56 -FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYI---LE 111
VFF + + ++T+K Y + E R IIVVQ + K+ + D+ + ++
Sbjct: 80 AMVFFSE--GLSMETMKRYHTQASEANCDRVIIVVQGRINAIVKRHVEDINRSSLGLKIQ 137
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELL 143
F E +L++NIT HELVP+H L EE +E+L
Sbjct: 138 LFDEDDLVVNITHHELVPKHTQLEDEEVKEML 169
>gi|413949944|gb|AFW82593.1| hypothetical protein ZEAMMB73_065125 [Zea mays]
Length = 142
Score = 56.6 bits (135), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 114 LESELLINITEHELVPEHIVLTPEEKQELLTRYWRSCVTIFWTQKRTG-EEHFLKECSFE 172
+E E+ INI EH LVPEH VLT EEK+ LL +Y + W Q R+G E+H E +
Sbjct: 35 MEVEMFINIKEHVLVPEHHVLTNEEKKTLLEQYTLKETQVLWPQTRSGHEDHQASETAAN 94
Query: 173 SATVKSVYPSLK 184
++ +Y +++
Sbjct: 95 TSHTTMLYDNVR 106
>gi|401827017|ref|XP_003887601.1| DNA-directed RNA polymerase subunit Rpb5 [Encephalitozoon hellem
ATCC 50504]
gi|392998607|gb|AFM98620.1| DNA-directed RNA polymerase subunit Rpb5 [Encephalitozoon hellem
ATCC 50504]
Length = 200
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 76/143 (53%), Gaps = 10/143 (6%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGY TQ+ Q L+ F+E++ ++ RS L + D P + F
Sbjct: 16 IEMVKDRGYTTTQEV--QPLESFREKYPFALTK----RSSLNFVCVDVDRPVA---IHFG 66
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
D+ K+G K+ + + +++ I I+++ +P A S++ + K+ +E FL E++
Sbjct: 67 DDEKMGKKSFEGLLSQYEKDNIFHLILILPQMPSP-AVMSMIALNAKFNVEIFLVEEMMF 125
Query: 121 NITEHELVPEHIVLTPEEKQELL 143
N T+H VP H +L+ EE++ +
Sbjct: 126 NKTKHSWVPPHRILSREERENVF 148
>gi|407407449|gb|EKF31248.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi
marinkellei]
Length = 219
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 22/152 (14%)
Query: 3 LCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQM------- 55
+C DR Y V + ++++FK+ + D P E R + V P +++
Sbjct: 29 MC-DRKYQVADKIIPSSVEEFKDWYTD-PREGVIYRDRMTV-------PCERIGVSQRSR 79
Query: 56 -FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYI---LE 111
VFF + + ++T+K Y + E R IIV Q + K+ + D+ + ++
Sbjct: 80 AMVFFSE--GLSMETMKRYHTQASEANCDRVIIVAQGKINAIVKRHVEDINRSSLGLKIQ 137
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELL 143
F E +L++NIT HELVP+H L EE +E+L
Sbjct: 138 LFDEDDLVVNITHHELVPKHTQLEDEEVKEML 169
>gi|326499964|dbj|BAJ90817.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 132
Score = 54.3 bits (129), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 57 VFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLES 116
+F P EP + I I+ +++ E + R I+++ + P AK+S V + ++ F +
Sbjct: 31 LFCPPEP-VRIANIQEIHDQIEGENLSRLILILLGKIMPRAKES-VKEKFTFKVDIFQVN 88
Query: 117 ELLINITEHELVPEHIVLTPEEKQELLTRY 146
ELL+NI++H+L P+H VLT EEK +LL Y
Sbjct: 89 ELLVNISKHDLKPKHEVLTAEEKAKLLKLY 118
>gi|413923120|gb|AFW63052.1| hypothetical protein ZEAMMB73_163602 [Zea mays]
Length = 222
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 115 ESELLINITEHELVPEHIVLTPEEKQELLTRYWRSCVTIFWTQKRTG-EEHFLKECSFES 173
E E+ INI EH LV EH VLT EEK+ LL RY + W Q R+G E+H E + +
Sbjct: 112 EVEMFINIKEHVLVSEHHVLTNEEKKTLLERYTLKETQVLWPQTRSGHEDHQASETAANT 171
Query: 174 ATVKSVYPSLKAPIF 188
+ +Y +++ +
Sbjct: 172 SHTTMLYDNVRTQVM 186
>gi|340057896|emb|CCC52248.1| putative DNA-directed RNA polymerases II subunit [Trypanosoma vivax
Y486]
Length = 308
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDP-TDQMFVFFP 60
++ DR Y + + + ++++QF+E + D+ S R + V P + VFF
Sbjct: 116 EMMRDRKYNIACNVIPESVEQFREWYTDQHSNA-ILRERMTVPCERVCGPQRSRAMVFFS 174
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYI---LEYFLESE 117
+G++ +K Y + R IIV + + K+ + D+ + ++ F E +
Sbjct: 175 Q--GLGMEAVKQYIMTANSDNCDRLIIVTSGKVNATVKRHVDDVNRTGVALKIQLFDEDD 232
Query: 118 LLINITEHELVPEHIVLTPEEKQELL 143
L++NIT HELVP+H L EE++E+L
Sbjct: 233 LVVNITHHELVPKHTQLEEEEEKEML 258
>gi|356506928|ref|XP_003522225.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Glycine max]
Length = 183
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 12/146 (8%)
Query: 3 LCHDRGYLVTQD-ELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
+ DRGY Q + +L +F +F P+ + L V H + +FV P
Sbjct: 1 MLQDRGYDAIQHANISPSLTEFCSRFSQNPNPQ-----TLDFCVPHLSNTVQVVFVG-PK 54
Query: 62 EPKIGIKTIKTYCQRMQEE-TIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
E + G T+ C ++ ++ ++ I+VV++ MT AK+ L + K +E +LL+
Sbjct: 55 EIRKG--TVNEICSQIADKGSLKWLILVVKSKMTSFAKKDLENFPFK--VETIKIDDLLV 110
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+H L P++ +LT +EKQ LLT++
Sbjct: 111 NITKHVLQPKYEILTDDEKQALLTKH 136
>gi|145481253|ref|XP_001426649.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393725|emb|CAK59251.1| unnamed protein product [Paramecium tetraurelia]
Length = 224
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 43 VLVAHNDDPTDQMFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSL 101
V+ +D TD+M + F+ + + K Y + + R I+V T + Q +
Sbjct: 63 VVCFKKEDETDKMVIQFYTKQTALNYDDAKKYISELSNRQVKRLIMVFPTDPFATKPQVV 122
Query: 102 ----------VDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
V+ Y E F E +L+ ++T+HELVP+HI+L +EK+ LL +Y
Sbjct: 123 EKKARFFIDQVNSIQTYSFELFGEDDLVYDVTKHELVPQHIILNDKEKELLLKKY 177
>gi|323305973|gb|EGA59708.1| Rpb5p [Saccharomyces cerevisiae FostersB]
Length = 114
Score = 51.6 bits (122), Expect = 0.001, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 16/89 (17%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP- 60
++ DRGY +TQ+E++ L+ FK ++ D S RP R +++ +PT++ FP
Sbjct: 21 EMVKDRGYFITQEEVELPLEDFKAKYCD--SMGRPQRK----MMSFQANPTEESISKFPD 74
Query: 61 ---------DEPKIGIKTIKTYCQRMQEE 80
DEP +G+KT+KT+ +QE+
Sbjct: 75 MGSLWVEFCDEPSVGVKTMKTFVIHIQEK 103
>gi|323310097|gb|EGA63291.1| Rpb5p [Saccharomyces cerevisiae FostersO]
Length = 114
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 16/89 (17%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E++ L+ FK ++ D S RP R +++ +PT++
Sbjct: 21 EMVKDRGYFITQEEVELPLEDFKAKYCD--SMGRPQRK----MMSFQANPTEESISKFPD 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEE 80
++V F DEP +G+KT+KT+ +QE+
Sbjct: 75 MGSLWVEFCDEPSVGVKTMKTFVIHIQEK 103
>gi|83315223|ref|XP_730700.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23490505|gb|EAA22265.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 91
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY++T E + FKE F E RS + ++ +H +D +++ V+F D
Sbjct: 17 EMLEDRGYIITAREKLENFAAFKELF----EENEKLRSRMTIITSHKNDANNKIIVYFVD 72
Query: 62 E-PKIGIKTIKTYCQRMQE 79
E K G+K ++ Y +++++
Sbjct: 73 EVKKTGVKPLREYNKKIKD 91
>gi|145481865|ref|XP_001426955.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124394033|emb|CAK59557.1| unnamed protein product [Paramecium tetraurelia]
Length = 223
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 17 DQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCQR 76
D+T + F+ ++ D EK IV +D+ + +F+ + + + K Q
Sbjct: 44 DETFEIFESKYRDNLPEK-------IVCFKRDDESDKLLIIFYTKQAPLTHEEAKKTIQD 96
Query: 77 MQEETIHRAIIVVQTG------MTPSAKQSL----VDMAPKYILEYFLESELLINITEHE 126
+ R I++ T K L V+ Y E F E +L+ ++T+HE
Sbjct: 97 FSNRQVKRLIMIFPTDPFATKPQVVDKKARLFIDQVNSIQTYSFELFGEDDLVYDVTKHE 156
Query: 127 LVPEHIVLTPEEKQELLTRY 146
LVP+HI+L EK+ LL +Y
Sbjct: 157 LVPQHIILNDREKELLLKKY 176
>gi|308160666|gb|EFO63141.1| RNA polymerase II subunit Rpb5a [Giardia lamblia P15]
Length = 229
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 19/165 (11%)
Query: 1 MQLCHDRGYLVTQDE---------LDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDP 51
+++ DRGY+V D+ L+QT F +F P + + + + N
Sbjct: 18 VEMLIDRGYMVQSDDMSPWSAEMLLNQTFQDFDGEFHTAPFSWKILGTHKLRKSSANSLN 77
Query: 52 TDQMFVF-FPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQ----TGMTPSAK--QSLVDM 104
+ + V P K I +K Q + + R I V+ + P K Q+ +D
Sbjct: 78 QETIKVRPVPVIDKDLIDKLKVETQNRETRPLDRIIYVIYGREGKKLDPPNKTIQARIDE 137
Query: 105 APK---YILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
A + ++E+FL + LLINIT+H LVP+H++L+ EK +L Y
Sbjct: 138 AQRANGIVIEHFLVTRLLINITKHVLVPKHVLLSEMEKSVVLKEY 182
>gi|428163062|gb|EKX32155.1| hypothetical protein GUITHDRAFT_82572, partial [Guillardia theta
CCMP2712]
Length = 81
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 27/34 (79%)
Query: 113 FLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
FL SEL +NIT HELVP+H VLT E+K+ LL RY
Sbjct: 1 FLASELKVNITRHELVPQHYVLTEEDKKTLLKRY 34
>gi|159108363|ref|XP_001704453.1| RNA polymerase II subunit Rpb5a [Giardia lamblia ATCC 50803]
gi|21842211|gb|AAM77735.1|AF510643_1 RNA polymerase II subunit Rpb5a [Giardia intestinalis]
gi|157432516|gb|EDO76779.1| RNA polymerase II subunit Rpb5a [Giardia lamblia ATCC 50803]
Length = 229
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 19/165 (11%)
Query: 1 MQLCHDRGYLVTQDE---------LDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDP 51
+++ DRGY+V D+ L+QT F +F P + + + + N
Sbjct: 18 IEMLIDRGYMVQSDDMSPWSAEMLLNQTFQDFDGEFHTAPFSWKILGTHKLRKSSANSLN 77
Query: 52 TDQMFVF-FPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQT---------GMTPSAKQSL 101
+ + V P K I +K Q + + R I V+ T A+
Sbjct: 78 QETIKVRPVPVIDKDLIDKLKVETQNRETRPLDRVIYVIYGREGKKLDSPNKTIQARIDE 137
Query: 102 VDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
A ++E+FL + LLINIT+H LVP+H++L+ EK +L Y
Sbjct: 138 AQRANGIVIEHFLVTRLLINITKHVLVPKHVLLSEMEKSVVLKEY 182
>gi|398013801|ref|XP_003860092.1| DNA-directed RNA polymerase II, putative [Leishmania donovani]
gi|322498311|emb|CBZ33385.1| DNA-directed RNA polymerase II, putative [Leishmania donovani]
Length = 342
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 53 DQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKY---- 108
+ + VFF PK+ IK + ++ ++ ++ + ++I+V + P + + +++ +
Sbjct: 194 NALMVFFSGSPKLSIKEVHSFREKALKK-MASSMIIVTNKIDPGVRMDVQELSGRMDEAT 252
Query: 109 -----ILEYFLESELLINITEHELVPEHIVLTPEEKQELLT 144
++ F E L N+ HE VP H+ LTP E + L
Sbjct: 253 GAELLSIQVFEEEALAFNVVRHETVPRHVALTPAEAEAFLA 293
>gi|146083994|ref|XP_001464894.1| putative DNA-directed RNA polymerase II [Leishmania infantum JPCM5]
gi|134068989|emb|CAM67132.1| putative DNA-directed RNA polymerase II [Leishmania infantum JPCM5]
Length = 342
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 53 DQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKY---- 108
+ + VFF PK+ IK + ++ ++ ++ + ++I+V + P + + +++ +
Sbjct: 194 NALMVFFSGSPKLSIKEVHSFREKALKK-MASSMIIVTNKIDPGVRMDVQELSGRMDEAT 252
Query: 109 -----ILEYFLESELLINITEHELVPEHIVLTPEEKQELLT 144
++ F E L N+ HE VP H+ LTP E + L
Sbjct: 253 GAELLSIQVFEEEALAFNVVRHETVPRHVALTPAEAEAFLA 293
>gi|253741620|gb|EES98486.1| RNA polymerase II subunit Rpb5a [Giardia intestinalis ATCC 50581]
Length = 229
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 1 MQLCHDRGYLVTQDE---------LDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDP 51
+++ DRGY+V D+ L QT F+ +F P + + L N +
Sbjct: 18 VEMLIDRGYMVQSDDISPWSAEMLLGQTFQDFEAEFHTAPFSWKILGTHK--LRKSNANS 75
Query: 52 TDQMFVFFPDEPKIG---IKTIKTYCQRMQEETIHRAIIVV------QTGMTPSAKQSLV 102
+Q + P I I ++ Q + + R I V+ + Q+ +
Sbjct: 76 LNQETIKVRPVPVIDKELIDKLRVETQNKETRPLDRIIYVIYGREGKKLDSPNKTIQARI 135
Query: 103 DMAPK---YILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
D A + I+E+FL + LLINIT H LVP+H++L+ EK +L Y
Sbjct: 136 DEAQRVNGIIIEHFLVTRLLINITRHVLVPKHVLLSEMEKSVVLKEY 182
>gi|157867863|ref|XP_001682485.1| putative DNA-directed RNA polymerase II [Leishmania major strain
Friedlin]
gi|68125939|emb|CAJ03745.1| putative DNA-directed RNA polymerase II [Leishmania major strain
Friedlin]
Length = 342
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 53 DQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKY---- 108
+ + VFF PK+ +K + ++ ++ ++ ++IVV + P + + +++ +
Sbjct: 194 NALMVFFSGSPKLSMKEVHSFREKALKKKAS-SMIVVTNKIDPGVRMDVQELSGRMDEAT 252
Query: 109 -----ILEYFLESELLINITEHELVPEHIVLTPEEKQELLT 144
++ F E L N+ HE VP H+ LTP E + L
Sbjct: 253 GAELLSIQVFEEEALAFNVVRHETVPRHVALTPAEAEAFLA 293
>gi|401419206|ref|XP_003874093.1| putative DNA-directed RNA polymerase II [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490327|emb|CBZ25587.1| putative DNA-directed RNA polymerase II [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 342
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 53 DQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKY---- 108
+ + +FF PK+ +K + ++ ++ ++ ++I+V + P + + +++ +
Sbjct: 194 NALMIFFSGSPKLSVKEVHSFREKALKKKAS-SMIIVANKIDPGVRMDVQELSGRMDEAT 252
Query: 109 -----ILEYFLESELLINITEHELVPEHIVLTPEEKQELLT 144
++ F E L N+ HE VP H+ LTP E + L
Sbjct: 253 GAELLSIQVFEEEALAFNVVRHETVPGHVALTPAEAEAFLA 293
>gi|169806439|ref|XP_001827964.1| DNA-directed RNA polymerase, subunit H, RpoH-RPB5 [Enterocytozoon
bieneusi H348]
gi|161779104|gb|EDQ31129.1| DNA-directed RNA polymerase, subunit H, RpoH-RPB5 [Enterocytozoon
bieneusi H348]
Length = 202
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEK------RPARSELIVLVAHNDDPTDQ 54
+++ DRGY+ Q Q L+ FK F + S R ++I+ H
Sbjct: 17 IEMLTDRGYIFEQSIFSQ-LEDFKNTFNLEDSTSCNFTAIRNVNDKVILCAIH------- 68
Query: 55 MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFL 114
F K+ K I+T ++I + I++ + +A L + +E FL
Sbjct: 69 ----FTSNDKLSKKQIETIITDYSNQSISKLILISCNKLNHAALAYL--DKSNFSIELFL 122
Query: 115 ESELLINITEHELVPEHIVLTPEEKQELL 143
++L N T+H LVP H +++ EEK LL
Sbjct: 123 YKDILFNPTKHILVPHHKIMSIEEKTTLL 151
>gi|154335547|ref|XP_001564012.1| putative DNA-directed RNA polymerase II [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061043|emb|CAM38062.1| putative DNA-directed RNA polymerase II [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 322
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 53 DQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKY---- 108
+ + VFF PK+ IK ++ + ++ ++ + ++IVV + P + + +++ +
Sbjct: 174 NALMVFFSSSPKLSIKEVQAFREKALKKKVS-SMIVVTNKVDPGVRMDVQELSGRMDEAT 232
Query: 109 -----ILEYFLESELLINITEHELVPEHIVLTPEEKQELLT 144
++ F E L N+ HE VP H+ L+P E L
Sbjct: 233 GAELLSIQVFEEEALAFNVVRHETVPHHVALSPTEAAMFLA 273
>gi|388498148|gb|AFK37140.1| unknown [Lotus japonicus]
Length = 150
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 75 QRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELVPEHIVL 134
Q + ++T+ +++V+ +T A +++ + K +E F ++LL+NIT+H L P+H VL
Sbjct: 59 QIVNKDTLSGVLLIVENNITGQALKAINLFSFK--VEIFQITDLLVNITKHVLKPKHQVL 116
Query: 135 TPEEKQELLTRY 146
T +K+ LL ++
Sbjct: 117 TDRQKKNLLKKF 128
>gi|443623430|ref|ZP_21107930.1| putative Glycoside hydrolase family 5 [Streptomyces
viridochromogenes Tue57]
gi|443343048|gb|ELS57190.1| putative Glycoside hydrolase family 5 [Streptomyces
viridochromogenes Tue57]
Length = 591
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 103/270 (38%), Gaps = 41/270 (15%)
Query: 107 KYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY---WRSCVTIFWTQKRTGEE 163
K ++++ L+ L + + H + I P + +L R+ W F + RT
Sbjct: 131 KEVVDWALDEGLYVVLNVHHDSWQWIKKMPADHDGVLARFNSTWAQISETFREEPRTLLF 190
Query: 164 HFLKECSFESATVKSVYPSLKAPIFQLLQQPLFLLVKTSDRANA---VFLPQGLSTPESH 220
+ E FE+AT + KA + L +V++S N+ + LP TP +
Sbjct: 191 ESVNEPQFENATAEQ-----KAQLLHELNTSFHKIVRSSGGGNSDRLLVLPTDGCTPSQN 245
Query: 221 PPVSPSIDTMLRSYEERH--SLVFSLAHFPFK-------HFKEVTLGDFLTNGKSLKQGV 271
+ T ++S +RH + V + +PF H+ E D ++
Sbjct: 246 --FMDDLYTTIKSLNDRHLIATVHYYSWYPFSINIAGGTHYDEAARNDLDDAFARMRDTF 303
Query: 272 PLTDIPV------MAFYTKHEL-------DELKPFFKFFYMGDLEVTANSVAQP------ 312
DIPV + Y H + LK + F + L ++ P
Sbjct: 304 VARDIPVYLGEYGLLGYPDHNHPSRVERGEALKYYEHFGHAARLAGVTTALWDPGTWAYL 363
Query: 313 NRKSSMETAPAMPVPMQAGYNTGEGYKSVD 342
NR++ T PA+ ++AG+ T G S D
Sbjct: 364 NRETLKWTDPALIAWIKAGWTTRSGTASFD 393
>gi|383320558|ref|YP_005381399.1| DNA-directed RNA polymerase subunit H [Methanocella conradii HZ254]
gi|379321928|gb|AFD00881.1| DNA-directed RNA polymerase, subunit H [Methanocella conradii
HZ254]
Length = 79
Score = 42.4 bits (98), Expect = 0.62, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
N+ EHELVP+HI+LT EE QE+L +Y
Sbjct: 6 NVLEHELVPDHILLTEEETQEVLKKY 31
>gi|68074991|ref|XP_679412.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56500156|emb|CAI00596.1| hypothetical protein PB108754.00.0 [Plasmodium berghei]
Length = 117
Score = 42.0 bits (97), Expect = 0.74, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 119 LINITEHELVPEHIVLTPEEKQELLTRY 146
++NIT+HELVP HI LT +EK+ LL RY
Sbjct: 16 VVNITKHELVPRHIPLTSDEKRNLLQRY 43
>gi|356927751|gb|AET42541.1| hypothetical protein EXVG_00192 [Emiliania huxleyi virus 202]
Length = 213
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 57 VFFPDEPKIGIKTIKTYCQRMQE--ETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFL 114
V+F +E K+G+K ++ +++ E++H ++ VQ G T S +D +E+
Sbjct: 76 VYFFNELKVGVKIVRDLLEKLDATPESVHLILVSVQ-GSTSSRPAHKMDH-----VEFLT 129
Query: 115 ESELLINITEHELVPEHIVLTPEEKQELLTRY 146
++ NIT+H LVP+H + E+ ++ +
Sbjct: 130 YKQMSFNITKHVLVPKHTYIDKEQADVIINSF 161
>gi|118387602|ref|XP_001026905.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Tetrahymena thermophila]
gi|89308672|gb|EAS06660.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 275
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 108 YILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
Y E F +L+INIT+H+LVP+H+ L EK++L+ +Y
Sbjct: 190 YKYEIFFFDDLVINITKHQLVPKHVPLNAIEKKKLMDKY 228
>gi|315426561|dbj|BAJ48191.1| DNA-directed RNA polymerase subunit H [Candidatus Caldiarchaeum
subterraneum]
gi|343485293|dbj|BAJ50947.1| DNA-directed RNA polymerase subunit H [Candidatus Caldiarchaeum
subterraneum]
Length = 76
Score = 40.4 bits (93), Expect = 2.6, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
++ITEH LVP+H VL+PEE +ELL RY
Sbjct: 1 MDITEHVLVPKHEVLSPEEAEELLRRY 27
>gi|154417816|ref|XP_001581927.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Trichomonas vaginalis G3]
gi|121916159|gb|EAY20941.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Trichomonas vaginalis G3]
Length = 217
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 23/37 (62%)
Query: 110 LEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
LE F EL NIT H VP+H VL+ EEK EL RY
Sbjct: 134 LETFTLQELQYNITMHFFVPKHKVLSNEEKNELFNRY 170
>gi|390348859|ref|XP_003727099.1| PREDICTED: uncharacterized protein LOC100891399 [Strongylocentrotus
purpuratus]
Length = 1403
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
Query: 49 DDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEET--IHRAIIVVQTGMTPSAKQSLVDMAP 106
DD +D +P PK G T+ T + EE ++ II K S VD
Sbjct: 880 DDQSDNKLFVYPPPPKFGGITVTTEDRDCLEEGEFLNDVIIDFYLKYIVMEKLSDVDRER 939
Query: 107 KYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRYWRSCVTIF 154
++ F LL T + P+ LTP+EK+ R W V IF
Sbjct: 940 THLFSCFFYKRLLQKDTPGNISPDLNGLTPKEKRHQKVRKWTRHVDIF 987
>gi|297616212|ref|YP_003710351.1| DNA-directed RNA polymerase subunit H [Methanocella arvoryzae
MRE50]
Length = 79
Score = 39.7 bits (91), Expect = 4.1, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
N+ EHELVPEHI+L+ EE E+L +Y
Sbjct: 6 NVLEHELVPEHILLSEEEAAEVLKKY 31
>gi|195433142|ref|XP_002064574.1| GK23922 [Drosophila willistoni]
gi|194160659|gb|EDW75560.1| GK23922 [Drosophila willistoni]
Length = 3792
Score = 39.3 bits (90), Expect = 4.6, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 410 TPGGDKTAADLPVYSYKGVPLYIPRGRQSPSSTVQPTVESPSGQKSYYPGENSAPAGISS 469
TPG + PVY P+YIP P P+ + YP + + IS
Sbjct: 469 TPGVINIPSPRPVYPISQQPIYIPN--SEPIKPAPNVFNIPATLRPTYPPQKAPVNDISY 526
Query: 470 TES----PGDIGVSGFTSPGPQPYSLPSGLGGTEGVSPHEEHVSLVFPSSPAPRPQPYSL 525
S PG I + P PQP PS + +P +V P PRP+ ++
Sbjct: 527 PTSEPPKPGVINIPSLPQPAPQPSHPPSFIP-----TPTPAYV-------PTPRPEVINI 574
Query: 526 PA 527
P+
Sbjct: 575 PS 576
>gi|116753351|ref|YP_842469.1| DNA-directed RNA polymerase subunit H [Methanosaeta thermophila PT]
gi|121694300|sp|A0B555.1|RPOH_METTP RecName: Full=DNA-directed RNA polymerase subunit H
gi|116664802|gb|ABK13829.1| DNA-directed RNA polymerase, subunit H [Methanosaeta thermophila
PT]
Length = 78
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 22/25 (88%)
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
+ +HELVPEHI+LTPEE Q++L +Y
Sbjct: 6 VQDHELVPEHILLTPEEAQQVLMQY 30
>gi|157867861|ref|XP_001682484.1| putative DNA-directed RNA polymerases II [Leishmania major strain
Friedlin]
gi|68125938|emb|CAJ03739.1| putative DNA-directed RNA polymerases II [Leishmania major strain
Friedlin]
Length = 239
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 27/168 (16%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQF--------------GDKPSEKRPARSELI----- 42
++ DR Y V Q + +L +F E++ G P++ P R ++I
Sbjct: 23 EMMSDRKYKVAQHVVPGSLGEFIERYVEEVEVTEDGGAAVGGGPTDALPRRKQVIRRDKM 82
Query: 43 VLVAHND---DPTDQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQ 99
L + T + V+F + + +K + E R + V + P ++
Sbjct: 83 TLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALNEGYQRIVFVTPSKPNPIVRK 142
Query: 100 SLVDMAPK----YILEYFLESELLINITEHELVPEHIVLTPEEKQELL 143
++ D + E F E EL +NIT HELVP+H L+ EE +++L
Sbjct: 143 TM-DTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSEEELRDVL 189
>gi|342184880|emb|CCC94362.1| putative DNA-directed RNA polymerase II [Trypanosoma congolense
IL3000]
Length = 292
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 110 LEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
++ F E EL NIT H VP+H+VLTP E +E L +
Sbjct: 209 IQIFEEEELSYNITRHSSVPKHVVLTPCEAKEFLQNW 245
>gi|389582031|dbj|GAB64431.1| cloroquine resistance associated protein Cg2 [Plasmodium cynomolgi
strain B]
Length = 2673
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 402 VQQESRGVTPGGDKTAADLPVYSYKGVPLYIPRGR-QSPSSTVQPTVESPSGQKSYYPGE 460
V + + GVTPGG K + + Y+ +G P G+ SPS SPSG+ + GE
Sbjct: 691 VDRRTGGVTPGGAKKSEEGGEYNAEGGKYNSPSGKYNSPSGKYN----SPSGKYNSPSGE 746
Query: 461 NSAPAGISSTESPGDIGVS 479
+AP+G ++++ +GV+
Sbjct: 747 YNAPSGQNNSQGDAKVGVT 765
>gi|401419204|ref|XP_003874092.1| putative DNA-directed RNA polymerases II [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490326|emb|CBZ25586.1| putative DNA-directed RNA polymerases II [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 239
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 27/168 (16%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQF--------------GDKPSEKRPARSELI----- 42
++ DR Y V Q + +L +F E++ G P++ P R ++I
Sbjct: 23 EMMSDRKYKVAQHVVPGSLGEFIERYVEEVEVTEDGGAAVGGGPTDAPPRRKQVIRRDKM 82
Query: 43 VLVAHND---DPTDQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQ 99
L + T + V+F + + +K + E R + V + P ++
Sbjct: 83 TLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALNEGYQRVVFVTPSKPNPIVRK 142
Query: 100 SLVDMAPK----YILEYFLESELLINITEHELVPEHIVLTPEEKQELL 143
++ D + E F E EL +NIT HELVP+H L+ EE +++L
Sbjct: 143 TM-DTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSEEELKDVL 189
>gi|253741540|gb|EES98408.1| RNA polymerase II subunit Rpb5b [Giardia intestinalis ATCC 50581]
Length = 201
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 22/150 (14%)
Query: 1 MQLCHDRGYLV--TQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVF 58
+++C DRGY + + ++ T ++ + + S RP L +V T ++
Sbjct: 17 LEMCRDRGYDIESLRKQMGLTAEEMGQLIDNNVSNLRP----LWFIVTKGPVATAVVYSV 72
Query: 59 FP---DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAK--QSLVDMAPKYILEYF 113
P IG Q + +E + + + + G T S + +++ I ++
Sbjct: 73 LPWADASAAIG--------QYLDQEAVQKCLFIYFGGPTTSCRSEHRVINDVEIDIYDF- 123
Query: 114 LESELLINITEHELVPEHIVLTPEEKQELL 143
S+ LIN T+H LVP+H +L+ EK +L
Sbjct: 124 --SQFLINPTKHSLVPKHTILSSTEKARVL 151
>gi|434389039|ref|YP_007099650.1| putative protease with the C-terminal PDZ domain [Chamaesiphon
minutus PCC 6605]
gi|428020029|gb|AFY96123.1| putative protease with the C-terminal PDZ domain [Chamaesiphon
minutus PCC 6605]
Length = 587
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 26/168 (15%)
Query: 249 FKHFKEVTLGDFLTNGKSLKQGVPLTDIPVMAFYTK--HELDELKPFFKFFYMGDLEVTA 306
++ F + +G T K++ + V D+ FY + H ++EL PF + LE+ +
Sbjct: 416 WEQFGKAEIGFTETQLKNIIESVAERDL--TDFYDRYIHGIEEL-PFNDYLNPFGLELKS 472
Query: 307 NSVAQP---------NRKSSMETAPAMPVPMQAGYNTGEGYKSVDGFKPDPVSGYPYANR 357
+ V P K ++++ A AG + G+ ++DGFK V+ +R
Sbjct: 473 DEVTVPYLGITVNSDRGKETIKSVAANSPAYLAGVDPGDELLAIDGFK---VTAEKLVDR 529
Query: 358 LPSSHPQK-------HAFFLAPVPVILPQPKPQEHHHDGPGQHNILNR 398
L + H L +P++L +P+PQ++H G G N ++R
Sbjct: 530 LKLYQEGQQINLTIFHGDRLMTLPIVLAKPQPQKYHLQGLG--NTVDR 575
>gi|442625924|ref|NP_001260040.1| dumpy, isoform Y [Drosophila melanogaster]
gi|440213325|gb|AGB92576.1| dumpy, isoform Y [Drosophila melanogaster]
Length = 18095
Score = 38.5 bits (88), Expect = 9.9, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 58/159 (36%), Gaps = 33/159 (20%)
Query: 380 PKPQEHHHDGPGQHNILNRSPSVQQESRGVTPGGDKTAADLPVYSYKGVPLYIPRGRQSP 439
P PQ + PG NI PSV Q PVY P+Y +P
Sbjct: 13961 PSPQPANPQKPGVVNI----PSVPQ----------------PVYPSPQPPVYDVNYPTTP 14000
Query: 440 SSTVQPTVESPSGQKSYYPGEN-----SAPAGISSTESPGDIGVSGFTSPG---PQPYSL 491
S V PS + P ++P +S T PG I + + PG PQ
Sbjct: 14001 VSQHPGVVNIPSAPRLVPPTSQRPVFITSPGNLSPTPQPGVINIPSVSQPGYPTPQSPIY 14060
Query: 492 PSGLGGTEGVSPHEEHV----SLVFPSSPAPRPQPYSLP 526
+ T+ P + V S+ PS PAP P P + P
Sbjct: 14061 DANYPTTQSPIPQQPGVVNIPSVPSPSYPAPNP-PVNYP 14098
>gi|442625912|ref|NP_001260034.1| dumpy, isoform S [Drosophila melanogaster]
gi|440213319|gb|AGB92570.1| dumpy, isoform S [Drosophila melanogaster]
Length = 18641
Score = 38.5 bits (88), Expect = 9.9, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 58/159 (36%), Gaps = 33/159 (20%)
Query: 380 PKPQEHHHDGPGQHNILNRSPSVQQESRGVTPGGDKTAADLPVYSYKGVPLYIPRGRQSP 439
P PQ + PG NI PSV Q PVY P+Y +P
Sbjct: 14507 PSPQPANPQKPGVVNI----PSVPQ----------------PVYPSPQPPVYDVNYPTTP 14546
Query: 440 SSTVQPTVESPSGQKSYYPGEN-----SAPAGISSTESPGDIGVSGFTSPG---PQPYSL 491
S V PS + P ++P +S T PG I + + PG PQ
Sbjct: 14547 VSQHPGVVNIPSAPRLVPPTSQRPVFITSPGNLSPTPQPGVINIPSVSQPGYPTPQSPIY 14606
Query: 492 PSGLGGTEGVSPHEEHV----SLVFPSSPAPRPQPYSLP 526
+ T+ P + V S+ PS PAP P P + P
Sbjct: 14607 DANYPTTQSPIPQQPGVVNIPSVPSPSYPAPNP-PVNYP 14644
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,656,879,999
Number of Sequences: 23463169
Number of extensions: 477734220
Number of successful extensions: 1029422
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 1665
Number of HSP's that attempted gapping in prelim test: 1024180
Number of HSP's gapped (non-prelim): 5667
length of query: 536
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 388
effective length of database: 8,886,646,355
effective search space: 3448018785740
effective search space used: 3448018785740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 79 (35.0 bits)