BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5290
(536 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B0BNE2|RPAB1_RAT DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Rattus norvegicus GN=Polr2e PE=2 SV=1
Length = 210
Score = 259 bits (661), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 121/146 (82%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKY+LE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>sp|Q80UW8|RPAB1_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus
musculus GN=Polr2e PE=2 SV=1
Length = 210
Score = 259 bits (661), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 121/146 (82%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKY+LE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>sp|Q5R587|RPAB1_PONAB DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo
abelii GN=POLR2E PE=2 SV=1
Length = 210
Score = 258 bits (660), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 121/146 (82%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++F+ QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>sp|P19388|RPAB1_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo
sapiens GN=POLR2E PE=1 SV=4
Length = 210
Score = 256 bits (654), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 121/146 (82%), Positives = 131/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK Q GDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>sp|Q2T9T3|RPAB1_BOVIN DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Bos
taurus GN=POLR2E PE=2 SV=1
Length = 210
Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 120/146 (82%), Positives = 130/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQD LDQTL++FK QFG KPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>sp|Q9N5K2|RPAB1_CAEEL DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Caenorhabditis elegans GN=rpb-5 PE=3 SV=1
Length = 211
Score = 241 bits (614), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 110/146 (75%), Positives = 130/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ HDRGYLV QDELDQ L+ FK Q+GD+PSEK+PARS+L +LVAHNDDP DQMFVFFP
Sbjct: 19 LQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAHNDDPADQMFVFFP 78
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ KIGIKTIK CQ+MQE+ I RAIIVVQTGMTPSAKQS+ DMAPKY+LE+FLE+EL++
Sbjct: 79 EDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMV 138
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EEK ELL RY
Sbjct: 139 NITEHELVPEHVVMTAEEKAELLARY 164
>sp|A8XGH1|RPAB1_CAEBR DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Caenorhabditis briggsae GN=rpb-5 PE=3 SV=1
Length = 211
Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 110/146 (75%), Positives = 130/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ HDRGYLV Q+ELDQ L+ FKE FGD+PSEK+PARS+L +LVAHNDDP DQMFVFFP
Sbjct: 19 LQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTILVAHNDDPADQMFVFFP 78
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ KIGIKTIK CQ+MQE+ I RAIIVVQTGMTPSAKQS+ DMAPKY+LE+FLE+EL++
Sbjct: 79 EDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMV 138
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EEK ELL RY
Sbjct: 139 NITEHELVPEHVVMTAEEKAELLARY 164
>sp|Q54EH2|RPAB1_DICDI DNA-directed RNA polymerases I, II, and III subunit rpabc1
OS=Dictyostelium discoideum GN=polr2e PE=3 SV=2
Length = 197
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 91/148 (61%), Gaps = 14/148 (9%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ DR Y++T E + P E +R L + DDPTD ++VFFP
Sbjct: 15 LQMLSDREYIITAYE------------QEYPRESFVSRENLTMYCVKKDDPTDSIYVFFP 62
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMA--PKYILEYFLESEL 118
D PK+G+ IK Y M++ +RAIIVVQ +TP AKQ+L + + K LE F E+EL
Sbjct: 63 DTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAEL 122
Query: 119 LINITEHELVPEHIVLTPEEKQELLTRY 146
L+NIT H+LVP+HI+LT EEK ELLTRY
Sbjct: 123 LVNITHHQLVPKHILLTKEEKLELLTRY 150
>sp|Q09191|RPAB1_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpb5 PE=1 SV=1
Length = 210
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 87/146 (59%), Gaps = 3/146 (2%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVA-HNDDPTDQMFVFFP 60
QL HDRGY V+Q ELD TLDQFK + R+ L ND +++ F
Sbjct: 20 QLVHDRGYGVSQAELDLTLDQFKAMHCGMG--RNLDRTTLSFYAKPSNDSNKGTIYIEFA 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
EP +GIK ++T+ + + I++ MTPSA + + + ++ +E F ES+L++
Sbjct: 78 KEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTGQFTIETFQESDLIV 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT HELVP+HI+L+P+EK+ELL RY
Sbjct: 138 NITHHELVPKHILLSPDEKKELLDRY 163
>sp|Q757H7|RPAB1_ASHGO DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=RPB5 PE=3 SV=1
Length = 215
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 95/155 (61%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E+D +L+ FK ++ D S RP R +++ +PT++
Sbjct: 21 EMVRDRGYFITQEEVDLSLEDFKAKYCD--SMGRPQRK----MMSFQSNPTEETLKKSPN 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +GIKT+K + + E+ I + Q G+TPSA + L +AP I E
Sbjct: 75 MGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLLPSVAPATI-E 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ EEK+ELL RY
Sbjct: 134 TFNETALVVNITHHELVPKHIKLSDEEKKELLKRY 168
>sp|Q6CJ62|RPAB1_KLULA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RPB5 PE=3
SV=1
Length = 215
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 94/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E+D +L+ FK ++ D S +P R +++ +PT++
Sbjct: 21 EMVRDRGYFITQEEIDLSLEDFKAKYCD--SMGKPQRK----MMSFQSNPTEESIEKFPE 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DE +G+KT+K + + E+ I + Q+G+TPSA + L AP ++E
Sbjct: 75 MGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILPTAAPA-VIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ EK+ELL RY
Sbjct: 134 TFPEASLVVNITHHELVPKHIRLSEAEKKELLKRY 168
>sp|P20434|RPAB1_YEAST DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPB5 PE=1 SV=1
Length = 215
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E++ L+ FK ++ D S RP R +++ +PT++
Sbjct: 21 EMVKDRGYFITQEEVELPLEDFKAKYCD--SMGRPQRK----MMSFQANPTEESISKFPD 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +G+KT+KT+ +QE+ I V Q +TPSA + LV P +E
Sbjct: 75 MGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMK-LVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ +EK+ELL RY
Sbjct: 134 TFNEAALVVNITHHELVPKHIRLSSDEKRELLKRY 168
>sp|Q9P4B9|RPAB1_KLUMA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Kluyveromyces marxianus GN=RPB5 PE=3 SV=1
Length = 215
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 94/155 (60%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E+D +L+ FK ++ D S +P R +++ +PT++
Sbjct: 21 EMVRDRGYFITQEEIDLSLEDFKVKYCD--SMGKPQRK----MMSFQSNPTEESIEKFPE 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DE +G+KT+K + + E+ I + Q+G+TPSA + L AP ++E
Sbjct: 75 MGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILPTAAPA-VIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ EK+ELL RY
Sbjct: 134 TFPEASLVVNITHHELVPKHIRLSDAEKKELLKRY 168
>sp|Q6FQA6|RPAB1_CANGA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=RPB5 PE=3 SV=1
Length = 215
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY + Q+ELD TL+ FK ++ D S R R +++ +PT++
Sbjct: 21 EMVRDRGYFIAQEELDLTLEDFKVKYCD--SMGRAQRK----MMSFQANPTEESMTKFPD 74
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DEP +G+KT+KT+ +QE+ I + Q +TPSA + LV P +E
Sbjct: 75 MGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMK-LVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT H+LVP+HI L EEK ELL RY
Sbjct: 134 TFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRY 168
>sp|Q6BIJ0|RPAB1_DEBHA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=RPB5 PE=3 SV=1
Length = 214
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 90/155 (58%), Gaps = 17/155 (10%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------- 54
++ DRGY +TQ+E+D +L +F+ + D S P R L+ +PT +
Sbjct: 20 EMVRDRGYYITQEEIDMSLAEFRSRICD--SMNVPQRK----LMCFQANPTAESLEKFPD 73
Query: 55 ---MFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
++V F DE +GIKT++ +C + E+ I + Q+ +TPSA + + ++P I E
Sbjct: 74 LGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITPSANKLIPTVSPASI-E 132
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E +L++NIT H+LVP+HI L +EK+ELL RY
Sbjct: 133 TFQEGDLVVNITHHDLVPKHIKLARDEKKELLERY 167
>sp|Q6CA26|RPAB1_YARLI DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RPB5
PE=3 SV=1
Length = 212
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 87/151 (57%), Gaps = 9/151 (5%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQ------M 55
+L DRGY +T E++ + DQF + D P K P + ++ + + + + ++ +
Sbjct: 18 ELVKDRGYTITDKEVNLSFDQFVSEMCD-PMGK-PIKKKMCFMASPSPEAIEKFPEMGNI 75
Query: 56 FVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLE 115
+V F +E + +KT++ +C + E I+V + MTPSA + + +AP I + F E
Sbjct: 76 WVEFCEEASVTVKTMRNFCIHISENKFATGILVYENNMTPSANRLIPSVAPATI-DTFQE 134
Query: 116 SELLINITEHELVPEHIVLTPEEKQELLTRY 146
++LL+NIT+H LVP HI L+ EK+ LL RY
Sbjct: 135 TDLLVNITKHVLVPTHIKLSGAEKKFLLERY 165
>sp|A0B555|RPOH_METTP DNA-directed RNA polymerase subunit H OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=rpoH PE=3 SV=1
Length = 78
Score = 39.3 bits (90), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 22/25 (88%)
Query: 122 ITEHELVPEHIVLTPEEKQELLTRY 146
+ +HELVPEHI+LTPEE Q++L +Y
Sbjct: 6 VQDHELVPEHILLTPEEAQQVLMQY 30
>sp|P31815|RPOH_THECE DNA-directed RNA polymerase subunit H OS=Thermococcus celer GN=rpoH
PE=3 SV=1
Length = 82
Score = 36.6 bits (83), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
+I HELVPEH +L+ EE +ELL RY
Sbjct: 8 DIFAHELVPEHRILSEEETKELLRRY 33
>sp|Q8C170|MYO9A_MOUSE Unconventional myosin-IXa OS=Mus musculus GN=Myo9a PE=1 SV=2
Length = 2542
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 21/135 (15%)
Query: 352 YPYANRLPSSHPQKHAFFLAPVPVILP---QPKPQEHHHD---------GPGQHNILNRS 399
Y + + PS A F P I P PQ H D GPGQ R
Sbjct: 1663 YSHRSDDPSREGSSRAIFFTPKDNITPLVHSGNPQAHKQDESAWKPKLAGPGQQETSQRF 1722
Query: 400 PSVQQESR--GVTPGGDKT-------AADLPVYSYKGVPLYIPRGRQSPSSTVQPTVESP 450
SV ++++ G+ T A+DL + + + +G+Q T + S
Sbjct: 1723 SSVDEQAKLHKAMSQGEITKLAVRQKASDLDIRPQRAKMRFWAKGKQGEKKTTRVKPASQ 1782
Query: 451 SGQKSYYPGENSAPA 465
S S++PG + PA
Sbjct: 1783 SEISSFFPGPDVTPA 1797
>sp|P0CAX5|OPHN1_RAT Oligophrenin-1 OS=Rattus norvegicus GN=Ophn1 PE=1 SV=1
Length = 802
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 51 PTDQMFVFFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYIL 110
PT + +++ ++ +GI +K YC R ++ET R + + T P AKQ VD+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC-RYEKET--RTLTMTPTEQKPGAKQGPVDLTLKYCV 322
Query: 111 EYFLES 116
ES
Sbjct: 323 RRKTES 328
>sp|Q9EQ60|CAC1H_RAT Voltage-dependent T-type calcium channel subunit alpha-1H OS=Rattus
norvegicus GN=Cacna1h PE=2 SV=2
Length = 2359
Score = 32.7 bits (73), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 450 PSGQKSYYPGENSAPAGISSTESPGDIGVSGFTSPGPQPYSLPSGLGGTEGVSPHEEHVS 509
PSG + G +S P G+ +PG S + P+PY + G +G+ H+S
Sbjct: 618 PSGTVNSKGGTSSRPKGLRGAGAPGAAVHSPLSLGSPRPYEKIQDVVGEQGLGRASSHLS 677
Query: 510 LVFPSSPAPRPQPYSL 525
+ P P PQ +L
Sbjct: 678 GLSVPCPLPSPQAGTL 693
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 227,605,016
Number of Sequences: 539616
Number of extensions: 11281518
Number of successful extensions: 24925
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 322
Number of HSP's that attempted gapping in prelim test: 24295
Number of HSP's gapped (non-prelim): 921
length of query: 536
length of database: 191,569,459
effective HSP length: 122
effective length of query: 414
effective length of database: 125,736,307
effective search space: 52054831098
effective search space used: 52054831098
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)