Query psy5290
Match_columns 536
No_of_seqs 178 out of 343
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 22:48:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_E DNA-directed RNA polyme 100.0 6.8E-58 2.3E-62 431.7 10.9 176 1-181 19-195 (210)
2 1dzf_A DNA-directed RNA polyme 100.0 6.9E-57 2.3E-61 426.2 7.6 174 1-180 20-199 (215)
3 1eik_A RNA polymerase subunit 99.9 5.4E-24 1.9E-28 175.5 4.8 60 118-180 1-60 (77)
4 1hmj_A RPB5, protein (subunit 99.9 5.6E-23 1.9E-27 169.9 3.6 58 120-180 1-58 (78)
5 4ayb_H DNA-directed RNA polyme 99.9 1.4E-22 4.6E-27 168.8 4.0 63 115-180 4-66 (84)
6 2jmk_A Hypothetical protein TA 56.2 30 0.001 30.3 6.9 62 20-84 46-107 (111)
7 1y88_A Hypothetical protein AF 47.8 28 0.00096 32.7 5.8 66 77-146 89-160 (199)
8 1wd5_A Hypothetical protein TT 41.6 96 0.0033 27.7 8.1 79 61-145 127-205 (208)
9 4f0q_A Restriction endonucleas 35.9 38 0.0013 35.7 5.2 51 60-114 360-410 (456)
10 2yxb_A Coenzyme B12-dependent 34.5 15 0.00053 32.2 1.7 72 3-96 41-112 (161)
11 1ug1_A KIAA1010 protein; struc 33.7 22 0.00075 30.5 2.5 43 135-182 3-47 (92)
12 3idw_A Actin cytoskeleton-regu 24.6 4.5 0.00015 33.4 -3.2 40 140-184 23-62 (72)
13 2fhd_A RAD9 homolog, DNA repai 20.2 84 0.0029 29.2 3.8 31 166-205 59-89 (153)
No 1
>3h0g_E DNA-directed RNA polymerases I, II, and III subunit rpabc1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-58 Score=431.70 Aligned_cols=176 Identities=34% Similarity=0.557 Sum_probs=171.0
Q ss_pred CcccCCCCCcCChhhHhcCHHHHHHHhCCCCCCCCCCCCceEEEeecCCCC-CCceEEEeCCCCCcchHHHHHHHHHHhh
Q psy5290 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDP-TDQMFVFFPDEPKIGIKTIKTYCQRMQE 79 (536)
Q Consensus 1 LEMLRDRGYlVsEeELnMSLEEFkekYgd~p~~GspdRe~LtfsashkdDP-TdKIfVFFpdE~KVGVKtIRkyiErMkE 79 (536)
+|||+||||.|+++|++||+++|+++||+++ +.++|++|+|.+.+++|| +++|||||+++++||+|+||+|+++|++
T Consensus 19 ~eMl~DRGY~v~~~e~~~sl~~F~~~~~~~~--~~~~r~~l~~~~~~~~dp~~~~i~VfF~~~~~vgvk~Ir~~~~~~~~ 96 (210)
T 3h0g_E 19 HQLVHDRGYGVSQAELDLTLDQFKAMHCGMG--RNLDRTTLSFYAKPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGD 96 (210)
T ss_dssp SSTTTTTTEECCTTTTSCCHHHHHHHSCCSS--SSCCCSSCCCEEEESSCSSCCCEEEECCCSSSCCTTTTGGGTHHHHH
T ss_pred HHHhcCCCCccCHHHHhCCHHHHHHHhcccC--CCCCchheEEEEEcCCCCccCeEEEEECCCCccChHHHHHHHHHHHH
Confidence 6999999999999999999999999999874 458999999999999999 9999999999999999999999999999
Q ss_pred cCCCEEEEEEcCCCCHHHHHHHhhcCccceeeEeeecceeeccccccccCceeecChHHHHHHHhhcCCCCCCccccccC
Q psy5290 80 ETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRYWRSCVTIFWTQKR 159 (536)
Q Consensus 80 ENI~RgIIVvQqkLTPsARKAL~emspkfkIEVFqEsELLVNITkHeLVPKHeVLS~EEKkeLLkrY~IK~~QLPkIk~t 159 (536)
+|++|+|||+|+++|++||+++.+++++++||+|+|+|||||||+|+|||+|++||+|||++||++|+|+++|||||+.+
T Consensus 97 en~~~~IiV~q~~~t~~A~~~l~~~~~~~~iE~F~e~eLlvnit~H~lVPkH~~ls~eE~~~lL~~y~i~~~qLP~I~~~ 176 (210)
T 3h0g_E 97 HNHKTGILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLA 176 (210)
T ss_dssp TTCSEEEECCSSCCCSHHHHTTTTTCTTCEECCCCSSSSCSCTTSBTTBCCEECCCHHHHHHHHHHTCCCTTTSCCCCTT
T ss_pred cCCceEEEEECCCCCHHHHHHHHHhCcCcEEEEEeehHeeEecccccccCcEEEcCHHHHHHHHHHcCCCHHHCCccccc
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCccCcEEecCC
Q psy5290 160 TGEEHFLKECSFESATVKSVYP 181 (536)
Q Consensus 160 DPvavfvk~iGAKpGDVVrv~~ 181 (536)
||+ ++++|||+||||+|.-
T Consensus 177 DPv---~~~~g~k~GdVvkI~R 195 (210)
T 3h0g_E 177 DPV---ARYLGLKRGEVVKIVR 195 (210)
T ss_dssp CHH---HHHHTCCTTCEEEEEC
T ss_pred Ccc---hhhhCCCCCCEEEEEe
Confidence 999 9999999999999853
No 2
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E 1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E* 1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E 1y1v_E 1y1w_E 1y1y_E ...
Probab=100.00 E-value=6.9e-57 Score=426.21 Aligned_cols=174 Identities=33% Similarity=0.561 Sum_probs=168.7
Q ss_pred CcccCCCCCcCChhhHhcCHHHHHHHhCCCCCCCCCCCCceEEEeecCCCCCCce------EEEeCCCCCcchHHHHHHH
Q psy5290 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQM------FVFFPDEPKIGIKTIKTYC 74 (536)
Q Consensus 1 LEMLRDRGYlVsEeELnMSLEEFkekYgd~p~~GspdRe~LtfsashkdDPTdKI------fVFFpdE~KVGVKtIRkyi 74 (536)
+|||+||||.|+++|++||+++|+++||+.+ |.++|++|+|++.+++|+++++ ||||+++++||+|+||+|+
T Consensus 20 ~eMl~DRGY~v~~~e~~~sl~~F~~~~~~~~--g~p~r~~L~~~~~~~~d~~~k~~~~~~~~VfF~~~~~vgvk~ir~~~ 97 (215)
T 1dzf_A 20 KEMVKDRGYFITQEEVELPLEDFKAKYCDSM--GRPQRKMMSFQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFV 97 (215)
T ss_dssp HHHHHHTTBCCCHHHHTCCHHHHHHHHBCTT--SCBCGGGTCEEECBCHHHHHHCTTCCCEEEEECSSSEECHHHHHHHH
T ss_pred HHHHhcCCCccCHhHhcCCHHHHHHHHcccc--CCCchhheEEEecCCCChhhhhccCCceEEEecCCCccchHHHHHHH
Confidence 5899999999999999999999999999853 5689999999999999999998 9999999999999999999
Q ss_pred HHHhhcCCCEEEEEEcCCCCHHHHHHHhhcCccceeeEeeecceeeccccccccCceeecChHHHHHHHhhcCCCCCCcc
Q psy5290 75 QRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRYWRSCVTIF 154 (536)
Q Consensus 75 ErMkEENI~RgIIVvQqkLTPsARKAL~emspkfkIEVFqEsELLVNITkHeLVPKHeVLS~EEKkeLLkrY~IK~~QLP 154 (536)
++|+++|++|+|||+|+++||+||+++.++++ ++||+|+|+||+||||+|+|||||++||+|||++||++|+|+++|||
T Consensus 98 ~~~~~e~~~~~IlV~q~~itp~Ak~~l~~~~~-~~iE~F~e~eL~vni~~H~lVP~H~~l~~eE~~~lL~~y~i~~~qLP 176 (215)
T 1dzf_A 98 IHIQEKNFQTGIFVYQNNITPSAMKLVPSIPP-ATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLP 176 (215)
T ss_dssp HHHHHTTCSEEEEEESSEECHHHHTTTTSSTT-CEEEEEEHHHHSSCGGGSTTSCEEEECCHHHHHHHHHHTTCCGGGSC
T ss_pred HHHHhcCCceEEEEECCCCChHHHHHHHHhcC-ceEEEeehHHheeccccceeccceEEccHHHHHHHHHHcCCCHHHCC
Confidence 99999999999999999999999999999988 89999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccccccccCCccCcEEecC
Q psy5290 155 WTQKRTGEEHFLKECSFESATVKSVY 180 (536)
Q Consensus 155 kIk~tDPvavfvk~iGAKpGDVVrv~ 180 (536)
||+.+||+ ++++|||+||||+|.
T Consensus 177 ~I~~~DPv---ar~~g~k~G~vvkI~ 199 (215)
T 1dzf_A 177 RIQRADPV---ALYLGLKRGEVVKII 199 (215)
T ss_dssp EECTTCHH---HHHHTCCTTCEEEEE
T ss_pred ceeccChh---hHHhCCcCCCEEEEE
Confidence 99999999 999999999999984
No 3
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=99.89 E-value=5.4e-24 Score=175.49 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=58.6
Q ss_pred eeeccccccccCceeecChHHHHHHHhhcCCCCCCccccccCCcccccccccCCccCcEEecC
Q psy5290 118 LLINITEHELVPEHIVLTPEEKQELLTRYWRSCVTIFWTQKRTGEEHFLKECSFESATVKSVY 180 (536)
Q Consensus 118 LLVNITkHeLVPKHeVLS~EEKkeLLkrY~IK~~QLPkIk~tDPvavfvk~iGAKpGDVVrv~ 180 (536)
|++|||+|+|||+|++||+|||++||++|+++++|||||+.+||+ ++++|||+||||+|-
T Consensus 1 l~vnIt~H~LVPkH~iLs~eEk~~lL~~y~i~~~qLP~I~~~DPv---ar~~G~k~GdVvkI~ 60 (77)
T 1eik_A 1 MKREILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPV---AKAIGAKRGDIVKII 60 (77)
T ss_dssp CCCCCCSSSSCCEEEEECHHHHHHHHHHTTCCTTTSCCCBTTSHH---HHGGGCCTTCEEEEE
T ss_pred CcccCccceecCCEEEcCHHHHHHHHHHcCCCHHHCCeeeCcCHh---hHHhCCCCCCEEEEE
Confidence 789999999999999999999999999999999999999999999 999999999999984
No 4
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=99.86 E-value=5.6e-23 Score=169.87 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=56.8
Q ss_pred eccccccccCceeecChHHHHHHHhhcCCCCCCccccccCCcccccccccCCccCcEEecC
Q psy5290 120 INITEHELVPEHIVLTPEEKQELLTRYWRSCVTIFWTQKRTGEEHFLKECSFESATVKSVY 180 (536)
Q Consensus 120 VNITkHeLVPKHeVLS~EEKkeLLkrY~IK~~QLPkIk~tDPvavfvk~iGAKpGDVVrv~ 180 (536)
||||+|+|||+|++||+|||++||++|+++++|||||+.+||+ ++++|||+||||+|-
T Consensus 1 vnIt~H~LVPkH~iLs~eEk~~lL~~y~i~~~qLPrI~~~DPv---ar~~G~k~GdVvkI~ 58 (78)
T 1hmj_A 1 MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPV---IQEIGAKEGDVVRVI 58 (78)
T ss_pred CCccceeeCCCeEECCHHHHHHHHHHcCCCHHHCCeeeCcCHh---hHHhCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999 999999999999984
No 5
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=99.85 E-value=1.4e-22 Score=168.83 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=58.0
Q ss_pred ecceeeccccccccCceeecChHHHHHHHhhcCCCCCCccccccCCcccccccccCCccCcEEecC
Q psy5290 115 ESELLINITEHELVPEHIVLTPEEKQELLTRYWRSCVTIFWTQKRTGEEHFLKECSFESATVKSVY 180 (536)
Q Consensus 115 EsELLVNITkHeLVPKHeVLS~EEKkeLLkrY~IK~~QLPkIk~tDPvavfvk~iGAKpGDVVrv~ 180 (536)
.++++||||+|+|||+|++||+||+++||++|+|+.+|||+|+.+||+ ++++|+++||||+|.
T Consensus 4 ~~~~~~Ni~~H~LVPkH~vLs~eE~~~ll~~y~i~~~qLP~I~~~DPv---a~~~g~k~GdVvkI~ 66 (84)
T 4ayb_H 4 SSNRKIDPRIHYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPV---ARSINAKPGDIIRII 66 (84)
T ss_dssp ----CCCCSSSSSCCEEEECCHHHHHHHHHHHTCCGGGSCCEESSSHH---HHHHTCCTTCEEEEE
T ss_pred cccceecccccccCCCeEECCHHHHHHHHHHhcCCHhHCCeecccCHh---HHhhCCCCCCEEEEE
Confidence 467999999999999999999999999999999999999999999999 999999999999985
No 6
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=56.22 E-value=30 Score=30.34 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCCCCCCCCCCceEEEeecCCCCCCceEEEeCCCCCcchHHHHHHHHHHhhcCCCE
Q psy5290 20 LDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEETIHR 84 (536)
Q Consensus 20 LEEFkekYgd~p~~GspdRe~LtfsashkdDPTdKIfVFFpdE~KVGVKtIRkyiErMkEENI~R 84 (536)
+.+|.++|..... ...++-++-+.-.+...+-+-|-|.+......+.||++++..++.|++.
T Consensus 46 l~dFIsryARTDE---ImPEDKTvGFvviN~dKK~mSvsFsd~~~~~K~~i~ei~kkykd~Gykv 107 (111)
T 2jmk_A 46 MMDFISRFARTDE---IMPEDKTVGFVVVNADKKLMSVSFSDIDENMKKVIKATAEKFKNKGFKV 107 (111)
T ss_dssp HHHHHHHHCCCSC---CCSSCEEEEEEEEETTTTEEEEEECSCCTTHHHHHHHHHHHGGGGCCEE
T ss_pred HHHHHHHhhcccc---cCCCCceeEEEEEecCCeEEEEEeehhhhhHHHHHHHHHHHhhcCCcee
Confidence 8899999975421 2334444333223333345778899988899999999999998887763
No 7
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=47.77 E-value=28 Score=32.68 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=46.6
Q ss_pred HhhcCCCEEEEEEcCCCCHHHHHHHhhcCccceeeEe-----eecceeeccccccccCc-eeecChHHHHHHHhhc
Q psy5290 77 MQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYF-----LESELLINITEHELVPE-HIVLTPEEKQELLTRY 146 (536)
Q Consensus 77 MkEENI~RgIIVvQqkLTPsARKAL~emspkfkIEVF-----qEsELLVNITkHeLVPK-HeVLS~EEKkeLLkrY 146 (536)
+...+.+++++|+-+..|+.|++.... ..|++. ...+|.--|.+..|=|= ---||++|+.+||++=
T Consensus 89 ~~~~~a~~g~VVTn~~FT~~A~~~A~~----~~I~Li~wd~p~g~~L~~~i~~~~l~pi~~l~~~~~e~~~l~~~~ 160 (199)
T 1y88_A 89 VEKHGFTQPWIFTNTKFSEEAKKYAGC----VGIKLTGWSYPEKEGIEVLLESKGLYPITILRIDKEVLDELVRAG 160 (199)
T ss_dssp HGGGTCSEEEEECSSEECHHHHHHHHH----HTCEEECSSCSTTTSHHHHHHTTTCCBGGGSSCCHHHHHHHHHTT
T ss_pred hhccCCCEEEEEECCCCCHHHHHHHHH----CCcEEEECCCCchHHHHHHHHHcCCCCeEEEeeCHHHHhhhhcCC
Confidence 445588999999999999999875433 345555 23556556666767661 1157999999999753
No 8
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=41.57 E-value=96 Score=27.66 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=51.6
Q ss_pred CCCCcchHHHHHHHHHHhhcCCCEEEEEEcCCCCHHHHHHHhhcCccceeeEeeecceeeccccccccCceeecChHHHH
Q psy5290 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITEHELVPEHIVLTPEEKQ 140 (536)
Q Consensus 61 dE~KVGVKtIRkyiErMkEENI~RgIIVvQqkLTPsARKAL~emspkfkIEVFqEsELLVNITkHeLVPKHeVLS~EEKk 140 (536)
||---.=.|++..++.+++.+..+..+++ --..+.+++.+.+.. .+-+|..-+-.+.+.++ --+-..+|++|..
T Consensus 127 DDvi~TG~Tl~~a~~~L~~~ga~~V~v~~-~v~~~~~~~~l~~~~---~~v~~~~~~~f~~v~~~--y~~~~~~~~~ev~ 200 (208)
T 1wd5_A 127 DDGVATGASMEAALSVVFQEGPRRVVVAV-PVASPEAVERLKARA---EVVALSVPQDFAAVGAY--YLDFGEVTDEDVE 200 (208)
T ss_dssp CSCBSSCHHHHHHHHHHHTTCCSEEEEEE-EEBCHHHHHHHHTTS---EEEEEECCTTCCCGGGG--BSCCCCCCHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHcCCCEEEEEE-EEcCHHHHHHhcccC---cEEEEecCcchhhHHHH--hcCCCCCCHHHHH
Confidence 55444557899999999999988776666 223456777676654 33334443333444333 3456789999999
Q ss_pred HHHhh
Q psy5290 141 ELLTR 145 (536)
Q Consensus 141 eLLkr 145 (536)
++|++
T Consensus 201 ~~l~~ 205 (208)
T 1wd5_A 201 AILLE 205 (208)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 99983
No 9
>4f0q_A Restriction endonuclease; cytosine methylation-dependent endonuclease, hydrolase; 2.05A {Mycobacterium SP} PDB: 4f0p_A
Probab=35.87 E-value=38 Score=35.73 Aligned_cols=51 Identities=10% Similarity=0.177 Sum_probs=39.4
Q ss_pred CCCCCcchHHHHHHHHHHhhcCCCEEEEEEcCCCCHHHHHHHhhcCccceeeEee
Q psy5290 60 PDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFL 114 (536)
Q Consensus 60 pdE~KVGVKtIRkyiErMkEENI~RgIIVvQqkLTPsARKAL~emspkfkIEVFq 114 (536)
..+..||.+.|+.|+..|. +...||+||-+..|..|++.+.+-. ..|.++.
T Consensus 360 ~~~~~Vg~~~I~~f~g~l~--~~~~GifITTS~Ft~~A~~ea~~d~--~pI~LId 410 (456)
T 4f0q_A 360 QPTSSVSPEQVARVVARLR--RGWIGVYVTTGSFSRQAQVEIIDDQ--YPVVLIA 410 (456)
T ss_dssp CTTSEECHHHHHHHHTTCC--TTEEEEEEESSEECHHHHHHHHHTT--CCEEEEC
T ss_pred cCCCCCCHHHHHHHHHhhc--CCCeEEEEECCcCCHHHHHHHHcCC--CcEEEEc
Confidence 4456799999999999884 5678999999999999987665432 3565543
No 10
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=34.55 E-value=15 Score=32.22 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=48.8
Q ss_pred ccCCCCCcCChhhHhcCHHHHHHHhCCCCCCCCCCCCceEEEeecCCCCCCceEEEeCCCCCcchHHHHHHHHHHhhcCC
Q psy5290 3 LCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEETI 82 (536)
Q Consensus 3 MLRDRGYlVsEeELnMSLEEFkekYgd~p~~GspdRe~LtfsashkdDPTdKIfVFFpdE~KVGVKtIRkyiErMkEENI 82 (536)
||++.||.|..-..+.+.++|.+..-+.. -++ |.+.+.. .-.+..++.+++.+++.+.
T Consensus 41 ~l~~~G~eVi~lG~~~p~e~lv~aa~~~~-------~di-------------V~lS~~~--~~~~~~~~~~i~~L~~~g~ 98 (161)
T 2yxb_A 41 ALRDAGFEVVYTGLRQTPEQVAMAAVQED-------VDV-------------IGVSILN--GAHLHLMKRLMAKLRELGA 98 (161)
T ss_dssp HHHHTTCEEECCCSBCCHHHHHHHHHHTT-------CSE-------------EEEEESS--SCHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHhcC-------CCE-------------EEEEeec--hhhHHHHHHHHHHHHhcCC
Confidence 78899999988888889999988764320 011 2222222 2468889999999999887
Q ss_pred CEEEEEEcCCCCHH
Q psy5290 83 HRAIIVVQTGMTPS 96 (536)
Q Consensus 83 ~RgIIVvQqkLTPs 96 (536)
....|++-+.+...
T Consensus 99 ~~i~v~vGG~~~~~ 112 (161)
T 2yxb_A 99 DDIPVVLGGTIPIP 112 (161)
T ss_dssp TTSCEEEEECCCHH
T ss_pred CCCEEEEeCCCchh
Confidence 54545566666553
No 11
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=33.73 E-value=22 Score=30.51 Aligned_cols=43 Identities=14% Similarity=0.031 Sum_probs=33.5
Q ss_pred ChHHHHHHHhhcCCCC--CCccccccCCcccccccccCCccCcEEecCCC
Q psy5290 135 TPEEKQELLTRYWRSC--VTIFWTQKRTGEEHFLKECSFESATVKSVYPS 182 (536)
Q Consensus 135 S~EEKkeLLkrY~IK~--~QLPkIk~tDPvavfvk~iGAKpGDVVrv~~~ 182 (536)
|++.+..||.+|..+. .-.+.+..++.+ ++.++.||+|-|+-.
T Consensus 3 t~~qr~~L~~~y~~~~LY~~t~~~~~tq~~-----dl~l~~GdlVAVl~k 47 (92)
T 1ug1_A 3 SGSSGASLLARYPPEKLFQAERNFNAAQDL-----DVSLLEGDLVGVIKK 47 (92)
T ss_dssp HHHHHHHHHHHSCGGGEEEESSCCCCCSSS-----CCCCCTTCEEEEEES
T ss_pred hHHHHHHHHhhCCchheEEeccCcCCCCce-----eeeecCCCEEEEEec
Confidence 5678999999999775 223667777777 678999999998754
No 12
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=24.60 E-value=4.5 Score=33.44 Aligned_cols=40 Identities=10% Similarity=-0.020 Sum_probs=31.7
Q ss_pred HHHHhhcCCCCCCccccccCCcccccccccCCccCcEEecCCCCc
Q psy5290 140 QELLTRYWRSCVTIFWTQKRTGEEHFLKECSFESATVKSVYPSLK 184 (536)
Q Consensus 140 keLLkrY~IK~~QLPkIk~tDPvavfvk~iGAKpGDVVrv~~~~~ 184 (536)
.....+=+|+++-||-|..+ + ++.+|.+.||||+|.-+|+
T Consensus 23 A~~F~~~ri~e~mL~Dl~~~--~---Lr~LGi~eGDIIrVmk~l~ 62 (72)
T 3idw_A 23 TINFDREQLTEDMMPDINNS--M---LRTLGLREGDIVRVMKHLD 62 (72)
T ss_dssp HHHHHHTTCCGGGGGGCCHH--H---HHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHhhCCHH--H---HHHcCCchhhHHHHHHHHH
Confidence 44566778888888877543 4 8999999999999988876
No 13
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=20.25 E-value=84 Score=29.17 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=26.1
Q ss_pred ccccCCccCcEEecCCCCchhhhhhccCcEEEEEEecCCc
Q psy5290 166 LKECSFESATVKSVYPSLKAPIFQLLQQPLFLLVKTSDRA 205 (536)
Q Consensus 166 vk~iGAKpGDVVrv~~~~~~~~~~~~~~~~fllv~~~d~~ 205 (536)
+|.+.++.||+|+|- .+. .--...|.++|+-
T Consensus 59 vk~LeLRiGD~VKVd-~vp--------K~~hiVvGf~~~l 89 (153)
T 2fhd_A 59 IKRFFLKKGDVVQST-RLG--------KIKHTVVKTFRST 89 (153)
T ss_dssp EEESCCCTTCEEEET-TST--------TCCEEEEEEECCC
T ss_pred ceeeeeecCCEEEEC-CCC--------CccEEEEEecccc
Confidence 688999999999999 555 5667888888886
Done!