Your job contains 1 sequence.
>psy5290
MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP
DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI
NITEHELVPEHIVLTPEEKQELLTRYWRSCVTIFWTQKRTGEEHFLKECSFESATVKSVY
PSLKAPIFQLLQQPLFLLVKTSDRANAVFLPQGLSTPESHPPVSPSIDTMLRSYEERHSL
VFSLAHFPFKHFKEVTLGDFLTNGKSLKQGVPLTDIPVMAFYTKHELDELKPFFKFFYMG
DLEVTANSVAQPNRKSSMETAPAMPVPMQAGYNTGEGYKSVDGFKPDPVSGYPYANRLPS
SHPQKHAFFLAPVPVILPQPKPQEHHHDGPGQHNILNRSPSVQQESRGVTPGGDKTAADL
PVYSYKGVPLYIPRGRQSPSSTVQPTVESPSGQKSYYPGENSAPAGISSTESPGDIGVSG
FTSPGPQPYSLPSGLGGTEGVSPHEEHVSLVFPSSPAPRPQPYSLPAGYGGVNERK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5290
(536 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0033571 - symbol:Rpb5 "Rpb5" species:7227 "Drosoph... 689 7.2e-68 1
ZFIN|ZDB-GENE-040801-83 - symbol:polr2eb "polymerase (RNA... 649 1.2e-63 1
UNIPROTKB|F2Z4J4 - symbol:POLR2E "DNA-directed RNA polyme... 645 3.3e-63 1
UNIPROTKB|E2R2E8 - symbol:POLR2E "Uncharacterized protein... 645 3.3e-63 1
UNIPROTKB|F6X571 - symbol:POLR2E "Uncharacterized protein... 645 3.3e-63 1
UNIPROTKB|I3LSI7 - symbol:POLR2E "Uncharacterized protein... 645 3.3e-63 1
UNIPROTKB|F1NHV9 - symbol:POLR2E "Uncharacterized protein... 644 4.2e-63 1
MGI|MGI:1913670 - symbol:Polr2e "polymerase (RNA) II (DNA... 644 4.2e-63 1
RGD|1589817 - symbol:Polr2e "polymerase (RNA) II (DNA dir... 644 4.2e-63 1
UNIPROTKB|Q5R587 - symbol:POLR2E "DNA-directed RNA polyme... 642 6.9e-63 1
UNIPROTKB|P19388 - symbol:POLR2E "DNA-directed RNA polyme... 637 2.3e-62 1
UNIPROTKB|Q2T9T3 - symbol:POLR2E "DNA-directed RNA polyme... 631 1.0e-61 1
WB|WBGene00019246 - symbol:rpb-5 species:6239 "Caenorhabd... 598 3.2e-58 1
TAIR|locus:2087842 - symbol:NRPB5 species:3702 "Arabidops... 353 4.0e-32 1
GENEDB_PFALCIPARUM|PF13_0341 - symbol:PF13_0341 "DNA-dire... 312 2.0e-27 1
UNIPROTKB|Q8ID59 - symbol:PF13_0341 "DNA-directed RNA pol... 312 2.0e-27 1
DICTYBASE|DDB_G0291636 - symbol:rpb5 "RNA polymerase II c... 311 2.5e-27 1
POMBASE|SPAC23C4.15 - symbol:rpb5 "DNA-directed RNA polym... 280 6.8e-24 1
SGD|S000000358 - symbol:RPB5 "RNA polymerase subunit ABC2... 265 3.0e-22 1
ASPGD|ASPL0000062840 - symbol:AN0752 species:162425 "Emer... 251 1.0e-20 1
TAIR|locus:2174388 - symbol:RPB5C ""RNA polymerase II fif... 234 7.3e-19 1
TAIR|locus:2096971 - symbol:RPB5E ""RNA polymerase II fif... 185 1.5e-13 1
TAIR|locus:2080650 - symbol:NRPE5 species:3702 "Arabidops... 182 3.2e-13 1
TAIR|locus:2089338 - symbol:AT3G16680 species:3702 "Arabi... 144 4.0e-09 1
TAIR|locus:2040257 - symbol:RPB5D ""RNA polymerase II fif... 151 9.2e-09 1
FB|FBgn0051626 - symbol:CG31626 species:7227 "Drosophila ... 116 0.00053 1
TAIR|locus:2222622 - symbol:AT5G14540 "AT5G14540" species... 120 0.00059 1
FB|FBgn0039480 - symbol:Cpr97Ea "Cuticular protein 97Ea" ... 117 0.00067 1
TAIR|locus:2154679 - symbol:ENODL1 "early nodulin-like pr... 117 0.00085 2
>FB|FBgn0033571 [details] [associations]
symbol:Rpb5 "Rpb5" species:7227 "Drosophila melanogaster"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 EMBL:AE013599 GO:GO:0007095 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 eggNOG:COG2012 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 GeneTree:ENSGT00390000013841
HSSP:P20434 OMA:DEAETYK EMBL:AY071329 RefSeq:NP_610630.1
UniGene:Dm.5984 SMR:Q7JZF5 STRING:Q7JZF5 EnsemblMetazoa:FBtr0088237
EnsemblMetazoa:FBtr0331935 GeneID:36160 KEGG:dme:Dmel_CG11979
UCSC:CG11979-RA CTD:36160 FlyBase:FBgn0033571 InParanoid:Q7JZF5
OrthoDB:EOG4MCVGC GenomeRNAi:36160 NextBio:797126 Uniprot:Q7JZF5
Length = 210
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 132/146 (90%), Positives = 139/146 (95%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQL HDRGYLVTQDELDQTL+QFKE FGDKPSEKRPARS+LIVLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPKIGIKTIKTYC RMQEE IHRAI+VVQ GMTPSAKQSLVDMAPKYILE FLESELLI
Sbjct: 78 EEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EEKQELL+RY
Sbjct: 138 NITEHELVPEHVVMTVEEKQELLSRY 163
>ZFIN|ZDB-GENE-040801-83 [details] [associations]
symbol:polr2eb "polymerase (RNA) II (DNA directed)
polypeptide E, b" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 ZFIN:ZDB-GENE-040801-83 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213
HOVERGEN:HBG057019 KO:K03013 OrthoDB:EOG479F81 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:CU695074
EMBL:BC077151 IPI:IPI00497952 RefSeq:NP_001003564.1
UniGene:Dr.82162 STRING:Q6DEG5 Ensembl:ENSDART00000035670
GeneID:445170 KEGG:dre:445170 CTD:445170 InParanoid:Q6DEG5
NextBio:20831932 Uniprot:Q6DEG5
Length = 210
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 124/146 (84%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTLD+F+ QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RAIIVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEHIV+T EE ELL RY
Sbjct: 138 NITEHELVPEHIVMTKEEVTELLARY 163
>UNIPROTKB|F2Z4J4 [details] [associations]
symbol:POLR2E "DNA-directed RNA polymerases I, II, and III
subunit RPABC1" species:9913 "Bos taurus" [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 IPI:IPI00702043 UniGene:Bt.4678 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:DAAA02020247
ProteinModelPortal:F2Z4J4 PRIDE:F2Z4J4 Ensembl:ENSBTAT00000027684
Uniprot:F2Z4J4
Length = 210
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 122/146 (83%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>UNIPROTKB|E2R2E8 [details] [associations]
symbol:POLR2E "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000783 InterPro:IPR005571
Pfam:PF01191 Pfam:PF03871 ProDom:PD005155 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
Ensembl:ENSCAFT00000031075 Uniprot:E2R2E8
Length = 212
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 122/146 (83%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>UNIPROTKB|F6X571 [details] [associations]
symbol:POLR2E "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000783 InterPro:IPR005571
Pfam:PF01191 Pfam:PF03871 ProDom:PD005155 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK Ensembl:ENSCAFT00000031075
EMBL:AAEX03012666 Uniprot:F6X571
Length = 210
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 122/146 (83%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>UNIPROTKB|I3LSI7 [details] [associations]
symbol:POLR2E "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 KO:K03013 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:FP475994
RefSeq:XP_003354010.1 RefSeq:XP_003354011.1
ProteinModelPortal:I3LSI7 PRIDE:I3LSI7 Ensembl:ENSSSCT00000023998
GeneID:100623333 KEGG:ssc:100623333 Uniprot:I3LSI7
Length = 210
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 122/146 (83%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>UNIPROTKB|F1NHV9 [details] [associations]
symbol:POLR2E "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:AADN02066638
IPI:IPI00604284 Ensembl:ENSGALT00000004080 Uniprot:F1NHV9
Length = 215
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 122/146 (83%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 23 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 82
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 83 EEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 142
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 143 NITEHELVPEHVVMTKEEVTELLARY 168
>MGI|MGI:1913670 [details] [associations]
symbol:Polr2e "polymerase (RNA) II (DNA directed)
polypeptide E" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
Pfam:PF03871 ProDom:PD005155 MGI:MGI:1913670 GO:GO:0003677
GO:GO:0004672 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 CTD:5434
eggNOG:COG2012 HOGENOM:HOG000205213 HOVERGEN:HBG057019 KO:K03013
OrthoDB:EOG479F81 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 OMA:DEAETYK EMBL:BC045521
IPI:IPI00337955 RefSeq:NP_079830.2 UniGene:Mm.18579
ProteinModelPortal:Q80UW8 SMR:Q80UW8 IntAct:Q80UW8 STRING:Q80UW8
PhosphoSite:Q80UW8 PaxDb:Q80UW8 PRIDE:Q80UW8 DNASU:66420
Ensembl:ENSMUST00000004786 GeneID:66420 KEGG:mmu:66420
InParanoid:Q80UW8 NextBio:321639 Bgee:Q80UW8 CleanEx:MM_POLR2E
Genevestigator:Q80UW8 GermOnline:ENSMUSG00000004667 Uniprot:Q80UW8
Length = 210
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 121/146 (82%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKY+LE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>RGD|1589817 [details] [associations]
symbol:Polr2e "polymerase (RNA) II (DNA directed) polypeptide E"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=IEA;ISO;ISS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0006468 "protein phosphorylation"
evidence=ISO] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
Pfam:PF03871 ProDom:PD005155 RGD:1589817 GO:GO:0003677
GO:GO:0004672 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 CTD:5434
eggNOG:COG2012 HOGENOM:HOG000205213 HOVERGEN:HBG057019 KO:K03013
OrthoDB:EOG479F81 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
GeneTree:ENSGT00390000013841 EMBL:BC158787 IPI:IPI00765968
RefSeq:NP_001103084.1 UniGene:Rn.65038 ProteinModelPortal:B0BNE2
SMR:B0BNE2 STRING:B0BNE2 PRIDE:B0BNE2 Ensembl:ENSRNOT00000018169
GeneID:690966 KEGG:rno:690966 UCSC:RGD:1589817 NextBio:742073
ArrayExpress:B0BNE2 Genevestigator:B0BNE2 Uniprot:B0BNE2
Length = 210
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 121/146 (82%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKY+LE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>UNIPROTKB|Q5R587 [details] [associations]
symbol:POLR2E "DNA-directed RNA polymerases I, II, and III
subunit RPABC1" species:9601 "Pongo abelii" [GO:0005634 "nucleus"
evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006468 "protein
phosphorylation" evidence=ISS] [GO:0004672 "protein kinase
activity" evidence=ISS] InterPro:IPR000783 InterPro:IPR005571
Pfam:PF01191 Pfam:PF03871 ProDom:PD005155 GO:GO:0003677
GO:GO:0006468 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 CTD:5434
HOVERGEN:HBG057019 KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110 EMBL:CR860977
RefSeq:NP_001126823.1 UniGene:Pab.18581 ProteinModelPortal:Q5R587
GeneID:100173829 KEGG:pon:100173829 InParanoid:Q5R587
Uniprot:Q5R587
Length = 210
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 121/146 (82%), Positives = 132/146 (90%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++F+ QFGDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>UNIPROTKB|P19388 [details] [associations]
symbol:POLR2E "DNA-directed RNA polymerases I, II, and III
subunit RPABC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0019048 "virus-host interaction"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA;TAS] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
Reactome:REACT_116125 GO:GO:0019048 GO:GO:0016032 GO:GO:0003677
Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471139 GO:GO:0006368
GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006370
GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892 GO:GO:0003899
EMBL:AC004151 GO:GO:0006386 GO:GO:0006385 GO:GO:0005665 CTD:5434
eggNOG:COG2012 HOGENOM:HOG000205213 HOVERGEN:HBG057019 KO:K03013
OrthoDB:EOG479F81 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110 EMBL:J04965
EMBL:S42643 EMBL:D38251 EMBL:AK312625 EMBL:BC004441 EMBL:BC034144
IPI:IPI00291093 PIR:S52002 RefSeq:NP_002686.2 UniGene:Hs.24301
ProteinModelPortal:P19388 SMR:P19388 DIP:DIP-56N IntAct:P19388
MINT:MINT-193645 STRING:P19388 PhosphoSite:P19388 DMDM:116242767
REPRODUCTION-2DPAGE:IPI00291093 SWISS-2DPAGE:P19388 PaxDb:P19388
PeptideAtlas:P19388 PRIDE:P19388 DNASU:5434 Ensembl:ENST00000215587
GeneID:5434 KEGG:hsa:5434 UCSC:uc002lre.4 GeneCards:GC19M001086
HGNC:HGNC:9192 MIM:180664 neXtProt:NX_P19388 PharmGKB:PA33512
InParanoid:P19388 OMA:DEAETYK PhylomeDB:P19388 GenomeRNAi:5434
NextBio:21025 ArrayExpress:P19388 Bgee:P19388 CleanEx:HS_POLR2E
Genevestigator:P19388 GermOnline:ENSG00000099817 Uniprot:P19388
Length = 210
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 121/146 (82%), Positives = 131/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQDELDQTL++FK Q GDKPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>UNIPROTKB|Q2T9T3 [details] [associations]
symbol:POLR2E "DNA-directed RNA polymerases I, II, and III
subunit RPABC1" species:9913 "Bos taurus" [GO:0006468 "protein
phosphorylation" evidence=ISS] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0003677 GO:GO:0006468 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 EMBL:BC111280 IPI:IPI00702043
RefSeq:NP_001033182.1 UniGene:Bt.4678 ProteinModelPortal:Q2T9T3
STRING:Q2T9T3 PRIDE:Q2T9T3 GeneID:512971 KEGG:bta:512971 CTD:5434
eggNOG:COG2012 HOGENOM:HOG000205213 HOVERGEN:HBG057019
InParanoid:Q2T9T3 KO:K03013 OrthoDB:EOG479F81 NextBio:20870640
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 Uniprot:Q2T9T3
Length = 210
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 120/146 (82%), Positives = 130/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQLCHDRGYLVTQD LDQTL++FK QFG KPSE RP R++L VLVAHNDDPTDQMFVFFP
Sbjct: 18 MQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+EPK+GIKTIK YCQRMQEE I RA+IVVQ GMTPSAKQSLVDMAPKYILE FL+ ELLI
Sbjct: 78 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLI 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EE ELL RY
Sbjct: 138 NITEHELVPEHVVMTKEEVTELLARY 163
>WB|WBGene00019246 [details] [associations]
symbol:rpb-5 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0032502
"developmental process" evidence=IMP] InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006351
GO:GO:0040035 GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213
KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 EMBL:FO081567 RefSeq:NP_491961.1
ProteinModelPortal:Q9N5K2 SMR:Q9N5K2 IntAct:Q9N5K2 STRING:Q9N5K2
PaxDb:Q9N5K2 EnsemblMetazoa:H27M09.2 GeneID:172412
KEGG:cel:CELE_H27M09.2 CTD:172412 WormBase:H27M09.2
GeneTree:ENSGT00390000013841 InParanoid:Q9N5K2 OMA:DQPLETF
NextBio:875409 Uniprot:Q9N5K2
Length = 211
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 110/146 (75%), Positives = 130/146 (89%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ HDRGYLV QDELDQ L+ FK Q+GD+PSEK+PARS+L +LVAHNDDP DQMFVFFP
Sbjct: 19 LQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAHNDDPADQMFVFFP 78
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
++ KIGIKTIK CQ+MQE+ I RAIIVVQTGMTPSAKQS+ DMAPKY+LE+FLE+EL++
Sbjct: 79 EDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMV 138
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NITEHELVPEH+V+T EEK ELL RY
Sbjct: 139 NITEHELVPEHVVMTAEEKAELLARY 164
>TAIR|locus:2087842 [details] [associations]
symbol:NRPB5 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IPI] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IPI] [GO:0006626 "protein
targeting to mitochondrion" evidence=RCA] [GO:0051604 "protein
maturation" evidence=RCA] InterPro:IPR000783 InterPro:IPR005571
Pfam:PF01191 Pfam:PF03871 ProDom:PD005155 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0006351 EMBL:AB022215
GO:GO:0003899 GO:GO:0000418 GO:GO:0005665 eggNOG:COG2012
HOGENOM:HOG000205213 KO:K03013 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 InterPro:IPR020608
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110
OMA:DEAETYK UniGene:At.28063 HSSP:O27122 EMBL:AF019248
EMBL:AF370551 EMBL:AF412101 EMBL:AY086150 EMBL:BT002130
IPI:IPI00519907 PIR:T51950 RefSeq:NP_188871.1 UniGene:At.6260
ProteinModelPortal:O81098 SMR:O81098 DIP:DIP-48677N IntAct:O81098
STRING:O81098 PaxDb:O81098 PRIDE:O81098 EnsemblPlants:AT3G22320.1
GeneID:821801 KEGG:ath:AT3G22320 TAIR:At3g22320 InParanoid:O81098
PhylomeDB:O81098 ProtClustDB:PLN03111 Genevestigator:O81098
Uniprot:O81098
Length = 205
Score = 353 (129.3 bits), Expect = 4.0e-32, P = 4.0e-32
Identities = 69/146 (47%), Positives = 96/146 (65%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
MQ+ DRGY + EL T QF + GD R +L+ L A +D +DQ+++FFP
Sbjct: 18 MQMLRDRGYFIADSELTMTKQQFIRKHGDNMK-----REDLVTLKAKRNDNSDQLYIFFP 72
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
DE K+G+KT+K Y RM+ E + RAI+VVQ +TP A+ + +++ K+ LE F E+E+L+
Sbjct: 73 DEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLV 132
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NI EH LVPEH VLT EEK+ LL RY
Sbjct: 133 NIKEHVLVPEHQVLTTEEKKTLLERY 158
>GENEDB_PFALCIPARUM|PF13_0341 [details] [associations]
symbol:PF13_0341 "DNA-directed RNA polymerase
2, putative" species:5833 "Plasmodium falciparum" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
Pfam:PF03871 ProDom:PD005155 GO:GO:0003677 GO:GO:0006366
EMBL:AL844509 GO:GO:0003899 GO:GO:0005665 HOGENOM:HOG000205213
KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287
ProtClustDB:PTZ00061 OMA:DEAETYK RefSeq:XP_001350359.1 HSSP:O27122
ProteinModelPortal:Q8ID59 PRIDE:Q8ID59
EnsemblProtists:PF13_0341:mRNA GeneID:814300 KEGG:pfa:PF13_0341
EuPathDB:PlasmoDB:PF3D7_1364800 Uniprot:Q8ID59
Length = 205
Score = 312 (114.9 bits), Expect = 2.0e-27, P = 2.0e-27
Identities = 61/146 (41%), Positives = 97/146 (66%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY++T E + FKE F D + RS++ + H +D +++ V+F D
Sbjct: 17 EMLEDRGYIMTPREKLENFSTFKEMFEDNDRQ----RSKMGISTTHKNDSNNRIIVYFAD 72
Query: 62 E-PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
E K G+K ++ +RM+E++I RAI+V Q +TP A+ ++ + AP++I+E FL++ELL+
Sbjct: 73 EVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHIIENFLDTELLV 132
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+HELVP HI LT +EK+ LL RY
Sbjct: 133 NITKHELVPRHIPLTSDEKKNLLQRY 158
>UNIPROTKB|Q8ID59 [details] [associations]
symbol:PF13_0341 "DNA-directed RNA polymerase 2, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0003677 GO:GO:0006366 EMBL:AL844509
GO:GO:0003899 GO:GO:0005665 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287
ProtClustDB:PTZ00061 OMA:DEAETYK RefSeq:XP_001350359.1 HSSP:O27122
ProteinModelPortal:Q8ID59 PRIDE:Q8ID59
EnsemblProtists:PF13_0341:mRNA GeneID:814300 KEGG:pfa:PF13_0341
EuPathDB:PlasmoDB:PF3D7_1364800 Uniprot:Q8ID59
Length = 205
Score = 312 (114.9 bits), Expect = 2.0e-27, P = 2.0e-27
Identities = 61/146 (41%), Positives = 97/146 (66%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY++T E + FKE F D + RS++ + H +D +++ V+F D
Sbjct: 17 EMLEDRGYIMTPREKLENFSTFKEMFEDNDRQ----RSKMGISTTHKNDSNNRIIVYFAD 72
Query: 62 E-PKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
E K G+K ++ +RM+E++I RAI+V Q +TP A+ ++ + AP++I+E FL++ELL+
Sbjct: 73 EVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHIIENFLDTELLV 132
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+HELVP HI LT +EK+ LL RY
Sbjct: 133 NITKHELVPRHIPLTSDEKKNLLQRY 158
>DICTYBASE|DDB_G0291636 [details] [associations]
symbol:rpb5 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISS] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
dictyBase:DDB_G0291636 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006366 GO:GO:0006383 GO:GO:0006360
GO:GO:0005736 GO:GO:0005666 GO:GO:0003899 GO:GO:0005665
eggNOG:COG2012 KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
InterPro:IPR014381 InterPro:IPR020608 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 PROSITE:PS01110 RefSeq:XP_635268.1
HSSP:P20434 ProteinModelPortal:Q54EH2 STRING:Q54EH2 GeneID:8628212
KEGG:ddi:DDB_G0291636 ProtClustDB:PTZ00061 Uniprot:Q54EH2
Length = 197
Score = 311 (114.5 bits), Expect = 2.5e-27, P = 2.5e-27
Identities = 67/148 (45%), Positives = 94/148 (63%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ DR Y++T +++++ P E +R L + DDPTD ++VFFP
Sbjct: 15 LQMLSDREYIITA---------YEQEY---PRESFVSRENLTMYCVKKDDPTDSIYVFFP 62
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAP--KYILEYFLESEL 118
D PK+G+ IK Y M++ +RAIIVVQ +TP AKQ+L + + K LE F E+EL
Sbjct: 63 DTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAEL 122
Query: 119 LINITEHELVPEHIVLTPEEKQELLTRY 146
L+NIT H+LVP+HI+LT EEK ELLTRY
Sbjct: 123 LVNITHHQLVPKHILLTKEEKLELLTRY 150
>POMBASE|SPAC23C4.15 [details] [associations]
symbol:rpb5 "DNA-directed RNA polymerase I, II and III
subunit Rpb5" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IGI]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IGI]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=IGI] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=IGI]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IGI]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 PomBase:SPAC23C4.15 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006366 GO:GO:0006383
GO:GO:0006360 GO:GO:0005736 GO:GO:0005666 GO:GO:0003899
GO:GO:0005665 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 OMA:DEAETYK EMBL:AF027820
EMBL:D43785 PIR:T38270 RefSeq:NP_593187.1 PDB:3H0G PDBsum:3H0G
ProteinModelPortal:Q09191 SMR:Q09191 IntAct:Q09191
MINT:MINT-1214324 STRING:Q09191 EnsemblFungi:SPAC23C4.15.1
GeneID:2541910 KEGG:spo:SPAC23C4.15 OrthoDB:EOG40CMS4
EvolutionaryTrace:Q09191 NextBio:20802997 Uniprot:Q09191
Length = 210
Score = 280 (103.6 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 60/146 (41%), Positives = 87/146 (59%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQF-GDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
QL HDRGY V+Q ELD TLDQFK G + R S ND +++ F
Sbjct: 20 QLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLS--FYAKPSNDSNKGTIYIEFA 77
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
EP +GIK ++T+ + + I++ MTPSA + + + ++ +E F ES+L++
Sbjct: 78 KEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTGQFTIETFQESDLIV 137
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT HELVP+HI+L+P+EK+ELL RY
Sbjct: 138 NITHHELVPKHILLSPDEKKELLDRY 163
>SGD|S000000358 [details] [associations]
symbol:RPB5 "RNA polymerase subunit ABC27" species:4932
"Saccharomyces cerevisiae" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI;IMP]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=IMP] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IDA] [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IDA] [GO:0001054 "RNA polymerase I activity"
evidence=IC] [GO:0001055 "RNA polymerase II activity" evidence=IDA]
[GO:0001056 "RNA polymerase III activity" evidence=IDA] [GO:0042797
"tRNA transcription from RNA polymerase III promoter" evidence=IDA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
Pfam:PF03871 ProDom:PD005155 SGD:S000000358 GO:GO:0003677
EMBL:BK006936 GO:GO:0006366 GO:GO:0006360 EMBL:X71329 EMBL:S59774
GO:GO:0005736 GO:GO:0005666 GO:GO:0003899 Reactome:REACT_83470
GO:GO:0005665 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 GeneTree:ENSGT00390000013841
OMA:DEAETYK OrthoDB:EOG40CMS4 EMBL:X53287 EMBL:Z36023 PIR:A34588
RefSeq:NP_009712.1 PDB:1DZF PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1DZF PDBsum:1I3Q
PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9
PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO
PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH
PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77
PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J
PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ
PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z
PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ
PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL
PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V
PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY
PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A
PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1
PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16
PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R
PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D
PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J
PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR
PDBsum:4BBS ProteinModelPortal:P20434 SMR:P20434 DIP:DIP-71N
IntAct:P20434 MINT:MINT-530046 STRING:P20434 PaxDb:P20434
PeptideAtlas:P20434 EnsemblFungi:YBR154C GeneID:852451
KEGG:sce:YBR154C CYGD:YBR154c Reactome:REACT_87991
EvolutionaryTrace:P20434 NextBio:971369 Genevestigator:P20434
GermOnline:YBR154C GO:GO:0042797 Uniprot:P20434
Length = 215
Score = 265 (98.3 bits), Expect = 3.0e-22, P = 3.0e-22
Identities = 61/155 (39%), Positives = 92/155 (59%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY +TQ+E++ L+ FK ++ D S RP R +++ +PT++ FPD
Sbjct: 21 EMVKDRGYFITQEEVELPLEDFKAKYCD--SMGRPQRK----MMSFQANPTEESISKFPD 74
Query: 62 ----------EPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILE 111
EP +G+KT+KT+ +QE+ I V Q +TPSA + LV P +E
Sbjct: 75 MGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMK-LVPSIPPATIE 133
Query: 112 YFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
F E+ L++NIT HELVP+HI L+ +EK+ELL RY
Sbjct: 134 TFNEAALVVNITHHELVPKHIRLSSDEKRELLKRY 168
>ASPGD|ASPL0000062840 [details] [associations]
symbol:AN0752 species:162425 "Emericella nidulans"
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=IEA] [GO:0042797 "tRNA transcription from RNA polymerase
III promoter" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001055 "RNA polymerase
II activity" evidence=IEA] [GO:0001056 "RNA polymerase III
activity" evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IEA]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 GO:GO:0006351
EMBL:AACD01000012 GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213
KO:K03013 Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
InterPro:IPR020608 PIRSF:PIRSF000747 SUPFAM:SSF53036
SUPFAM:SSF55287 PROSITE:PS01110 OrthoDB:EOG40CMS4
RefSeq:XP_658356.1 ProteinModelPortal:Q5BFC8 SMR:Q5BFC8
STRING:Q5BFC8 EnsemblFungi:CADANIAT00001913 GeneID:2876528
KEGG:ani:AN0752.2 OMA:EQDLLVN Uniprot:Q5BFC8
Length = 235
Score = 251 (93.4 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 63/162 (38%), Positives = 97/162 (59%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQF-GDK--PS-EK-----RPA---RSELIVL-VAHN 48
++ DRGY VT++E+ LD+FK ++ G+K PS EK RP +++ L N
Sbjct: 28 EMLQDRGYEVTEEEVKIDLDEFKRKYVGEKGYPSREKLKIQARPTEAMKAKYTPLPTPSN 87
Query: 49 DDPTDQ---MFV-FFPDEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDM 104
DP +++ F PD+ IG K ++T+ + E H I + +T ++PSA + L+
Sbjct: 88 RDPQPDCGTIYIEFCPDDSGIGTKQVRTFNHTVDEGNFHTGIFITKTPISPSAVR-LLSG 146
Query: 105 APKYILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRY 146
P I E+F E +LL+NIT HELVP+H++L+PEEK +LL RY
Sbjct: 147 IPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKSKLLQRY 188
>TAIR|locus:2174388 [details] [associations]
symbol:RPB5C ""RNA polymerase II fifth largest subunit,
C"" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006351 EMBL:AB013396
GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 HSSP:P20434
ProtClustDB:PLN03111 IPI:IPI00523401 RefSeq:NP_200606.1
UniGene:At.55610 ProteinModelPortal:Q9FJL8 SMR:Q9FJL8 STRING:Q9FJL8
PaxDb:Q9FJL8 PRIDE:Q9FJL8 EnsemblPlants:AT5G57980.1 GeneID:835909
KEGG:ath:AT5G57980 TAIR:At5g57980 InParanoid:Q9FJL8 OMA:GYTIEES
PhylomeDB:Q9FJL8 Genevestigator:Q9FJL8 Uniprot:Q9FJL8
Length = 210
Score = 234 (87.4 bits), Expect = 7.3e-19, P = 7.3e-19
Identities = 48/147 (32%), Positives = 88/147 (59%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ DRGY + + +L+ ++F ++F K K + L V +P D+++VF+P
Sbjct: 19 LQMLRDRGYTIEESDLNLKREEFVQRFC-KTMNK-VNKEALFVSANKGPNPADKIYVFYP 76
Query: 61 DEPKIGIKTIKTYCQ-RMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
+ PK+G+ IK +M+++ +HR I+VV +T A+ ++ ++ +E F E+EL+
Sbjct: 77 EGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKMLTIEVFEEAELV 136
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
NITEH+LV ++ VL + K++LL Y
Sbjct: 137 TNITEHKLVNKYYVLDDQAKKKLLNTY 163
>TAIR|locus:2096971 [details] [associations]
symbol:RPB5E ""RNA polymerase II fifth largest subunit,
E"" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0006351 EMBL:AL138656
GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 HSSP:P20434
ProtClustDB:PLN03111 IPI:IPI00548152 PIR:T47608 RefSeq:NP_191013.1
UniGene:At.1460 UniGene:At.71274 ProteinModelPortal:Q9M1H8
SMR:Q9M1H8 STRING:Q9M1H8 EnsemblPlants:AT3G54490.1 GeneID:824614
KEGG:ath:AT3G54490 TAIR:At3g54490 InParanoid:Q9M1H8 OMA:SKMNHFA
PhylomeDB:Q9M1H8 Genevestigator:Q9M1H8 Uniprot:Q9M1H8
Length = 233
Score = 185 (70.2 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 47/146 (32%), Positives = 80/146 (54%)
Query: 2 QLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPD 61
++ DRGY V + EL TL +F+ FG+KP +R L + V DP ++ V F
Sbjct: 48 EMLRDRGYEVNEAELSLTLSEFRSVFGEKPELER-----LRICVPLRSDPKKKILVVFMG 102
Query: 62 EPKIGIKTIKT-YCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
I +K+++ + Q +H I+V+Q+ M A+++L P + +E F +LL+
Sbjct: 103 TEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTF-P-FTVETFPIEDLLV 160
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+H P+ +L EEK++LL ++
Sbjct: 161 NITKHIQQPKIEILNKEEKEQLLRKH 186
>TAIR|locus:2080650 [details] [associations]
symbol:NRPE5 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IPI] InterPro:IPR000783
InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871 ProDom:PD005155
EMBL:CP002686 GO:GO:0003677 GO:GO:0006351 EMBL:AL138655
GO:GO:0003899 GO:GO:0000419 KO:K03013 Gene3D:3.40.1340.10
Gene3D:3.90.940.20 InterPro:IPR014381 PIRSF:PIRSF000747
SUPFAM:SSF53036 SUPFAM:SSF55287 HSSP:P20434 ProtClustDB:PLN03111
EMBL:BT005410 EMBL:AK118958 IPI:IPI00518077 PIR:T47768
RefSeq:NP_191267.1 UniGene:At.28133 ProteinModelPortal:Q9M1J2
SMR:Q9M1J2 DIP:DIP-48680N STRING:Q9M1J2 PRIDE:Q9M1J2
EnsemblPlants:AT3G57080.1 GeneID:824875 KEGG:ath:AT3G57080
TAIR:At3g57080 InParanoid:Q9M1J2 OMA:TVVKVIY PhylomeDB:Q9M1J2
ArrayExpress:Q9M1J2 Genevestigator:Q9M1J2 Uniprot:Q9M1J2
Length = 222
Score = 182 (69.1 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 44/147 (29%), Positives = 81/147 (55%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+Q+ DRGY V+ ++++ +L F+ +G++P R L + H D T ++ + F
Sbjct: 36 LQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDR-----LRISALHRSDSTKKVKIVFF 90
Query: 61 DEPKIGIKTIKTY-CQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
+ + I++ + +ETI I+V+Q +T A +++ + K +E F ++LL
Sbjct: 91 GTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFK--VEIFQITDLL 148
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+H L P+H VL EEK LL ++
Sbjct: 149 VNITKHSLKPQHQVLNDEEKTTLLKKF 175
>TAIR|locus:2089338 [details] [associations]
symbol:AT3G16680 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191
ProDom:PD005155 GO:GO:0005634 EMBL:CP002686 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 Gene3D:3.40.1340.10 Gene3D:3.90.940.20
SUPFAM:SSF53036 IPI:IPI00538237 RefSeq:NP_188290.1 UniGene:At.53338
ProteinModelPortal:F4J2R9 SMR:F4J2R9 EnsemblPlants:AT3G16680.1
GeneID:820920 KEGG:ath:AT3G16680 Uniprot:F4J2R9
Length = 87
Score = 144 (55.7 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 70 IKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMA---PKYILEYFLESELLINITEHE 126
+K Y +++ + RAI+VVQ + ++Q+LV + P + +E F E EL++N+ EH
Sbjct: 1 MKKYIDQLKSANVFRAILVVQD-IKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHV 59
Query: 127 LVPEHIVLTPEEKQELLTR 145
VPEH LT EEKQ+ L R
Sbjct: 60 FVPEHQALTTEEKQKFLER 78
>TAIR|locus:2040257 [details] [associations]
symbol:RPB5D ""RNA polymerase II fifth largest subunit,
D"" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR000783 InterPro:IPR005571 Pfam:PF01191 Pfam:PF03871
ProDom:PD005155 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006351 EMBL:AC005662
GO:GO:0003899 eggNOG:COG2012 HOGENOM:HOG000205213 KO:K03013
Gene3D:3.40.1340.10 Gene3D:3.90.940.20 InterPro:IPR014381
PIRSF:PIRSF000747 SUPFAM:SSF53036 SUPFAM:SSF55287 HSSP:P20434
ProtClustDB:PLN03111 EMBL:AY078926 IPI:IPI00521699 PIR:E84840
RefSeq:NP_181665.1 UniGene:At.42846 ProteinModelPortal:Q9ZVB9
SMR:Q9ZVB9 STRING:Q9ZVB9 PaxDb:Q9ZVB9 PRIDE:Q9ZVB9
EnsemblPlants:AT2G41340.1 GeneID:818732 KEGG:ath:AT2G41340
TAIR:At2g41340 InParanoid:Q9ZVB9 OMA:YLARRTT PhylomeDB:Q9ZVB9
ArrayExpress:Q9ZVB9 Genevestigator:Q9ZVB9 Uniprot:Q9ZVB9
Length = 218
Score = 151 (58.2 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 39/147 (26%), Positives = 80/147 (54%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M++ DRGY V+ ++++ +L QF+ +G+ P L + H D + ++ V F
Sbjct: 32 MEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDL-----LRISAKHRFDSSKKISVVFC 86
Query: 61 DEPKIGIKTIKTYCQR-MQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELL 119
+ + ++ + E I I+V+Q+ +T A ++ V++ + +E F ++LL
Sbjct: 87 GTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKA-VELF-SFKVELFEITDLL 144
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+N+++H L P+H VL +EK+ LL ++
Sbjct: 145 VNVSKHVLRPKHQVLNDKEKESLLKKF 171
>FB|FBgn0051626 [details] [associations]
symbol:CG31626 species:7227 "Drosophila melanogaster"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:AE014134 GeneTree:ENSGT00700000104613
RefSeq:NP_724320.1 RefSeq:NP_724321.1 UniGene:Dm.20929
MINT:MINT-757044 EnsemblMetazoa:FBtr0081485
EnsemblMetazoa:FBtr0081486 GeneID:318859 KEGG:dme:Dmel_CG31626
UCSC:CG31626-RA FlyBase:FBgn0051626 eggNOG:NOG293547
InParanoid:Q8INT9 OMA:PAPVSEY GenomeRNAi:318859 NextBio:846347
InterPro:IPR004019 Pfam:PF02757 Uniprot:Q8INT9
Length = 285
Score = 116 (45.9 bits), Expect = 0.00053, P = 0.00053
Identities = 56/203 (27%), Positives = 82/203 (40%)
Query: 333 NTGEGYKSVDGFKPDPVSGYPYANRLPSSHPQKHAFFLAPVPV-ILPQPKPQEHHHDGPG 391
N G GY S + KP P P A P+ P AP P + P P + P
Sbjct: 22 NLGSGY-SYN--KPTPTFNIPSAPA-PAYLPPVQEVISAPAPAPVYSAPAPAPVY-SAPA 76
Query: 392 QHNILNRSPSVQQESRGVTPGGDKTAADLPVYSYKG-VPLYIPRGRQSPSSTVQPTVESP 450
+ + +P+ S + P D A PVYS P+Y +P+ P +P
Sbjct: 77 PAPVYS-APAPAPVSEYLPPVQD-IPAPAPVYSAPAPAPVY-----SAPAPA--PVYSAP 127
Query: 451 SGQKSYYPGENS----APAGISSTESPGDIGVSGFTSPGPQP-YSLPSGLGGTEGVSPHE 505
+ Y P APA + S +P + +++P P P YS P+ +E + P +
Sbjct: 128 APAPEYLPPVQDIPAPAPAPVYSAPAPAPV----YSAPAPAPVYSAPAPAPVSEYLPPVQ 183
Query: 506 EHVSLVFPSSPAPRPQP-YSLPA 527
+ + P AP P P YS PA
Sbjct: 184 D-IPAPAPVYSAPAPAPVYSAPA 205
>TAIR|locus:2222622 [details] [associations]
symbol:AT5G14540 "AT5G14540" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005829 "cytosol" evidence=IDA] GO:GO:0005829
EMBL:CP002688 GenomeReviews:BA000015_GR InterPro:IPR015940
PROSITE:PS50030 EMBL:AK317556 IPI:IPI00517110 RefSeq:NP_196958.2
UniGene:At.23763 PaxDb:B9DHK3 PRIDE:B9DHK3
EnsemblPlants:AT5G14540.1 GeneID:831305 KEGG:ath:AT5G14540
TAIR:At5g14540 eggNOG:NOG312913 HOGENOM:HOG000237550 OMA:PETHSTH
PhylomeDB:B9DHK3 ProtClustDB:CLSN2918622 Genevestigator:B9DHK3
InterPro:IPR010820 Pfam:PF07223 Uniprot:B9DHK3
Length = 547
Score = 120 (47.3 bits), Expect = 0.00059, P = 0.00059
Identities = 62/190 (32%), Positives = 76/190 (40%)
Query: 357 RLPSSH-PQKHAFF-----LAPVPVILP--QPKP--QEHH---HDGPGQHNILNRSPSVQ 403
+LP+ PQ+ +F P P I P QP P Q H + P Q + P Q
Sbjct: 285 QLPNQFSPQQEPYFPPSGQSQPPPTIQPPYQPPPPTQSLHQPPYQPPPQQPQYPQQPPPQ 344
Query: 404 -QESRGVTPGGDKTAADLPVYSYKGVPLYIPRGRQSPSSTVQPTVESPSGQKSYYPGENS 462
Q G P + P Y + P PR Q PS P +PS Q YY N+
Sbjct: 345 LQHPSGYNP-------EEPPYPQQSYPPNPPR--QPPSHP--PPGSAPSQQ--YY---NA 388
Query: 463 APAGISSTESPGDIGVSGFTS---PGPQPYS-LPSGLGGTEGVSP-HEEHV-SLVFPSSP 516
P S + PG SGF S P PY+ PS G T V P H+ S +P P
Sbjct: 389 PPTPPSMYDGPGGRSNSGFPSGYSPESYPYTGPPSQYGNTPSVKPTHQSGSGSGAYPQLP 448
Query: 517 APRPQPYSLP 526
RP P LP
Sbjct: 449 MARPLPQGLP 458
>FB|FBgn0039480 [details] [associations]
symbol:Cpr97Ea "Cuticular protein 97Ea" species:7227
"Drosophila melanogaster" [GO:0005214 "structural constituent of
chitin-based cuticle" evidence=ISS] InterPro:IPR000618 Pfam:PF00379
PROSITE:PS51155 GO:GO:0042302 EMBL:BT010216 PaxDb:Q6NR62
PRIDE:Q6NR62 FlyBase:FBgn0039480 eggNOG:NOG41228 InParanoid:Q6NR62
OrthoDB:EOG4TB2T8 ArrayExpress:Q6NR62 Bgee:Q6NR62 Uniprot:Q6NR62
Length = 366
Score = 117 (46.2 bits), Expect = 0.00067, P = 0.00067
Identities = 53/164 (32%), Positives = 66/164 (40%)
Query: 371 APVPVILPQPKPQEHHHDGPGQHNILNRSPSV-QQESRGVTPGGDKTAADLPVYSYKGVP 429
AP P PQP PQ H P QH+ PSV R PG +T D+ +YS P
Sbjct: 194 APAPQPQPQPLPQPQHL--PQQHH----QPSVGPAPPRLQVPGAQRTT-DV-LYS----P 241
Query: 430 LYIPRGRQSPSSTVQPTVESPSGQKSYYPGENSAPAGISSTESPGDIGVSGFTSP--GPQ 487
L P + S Q + PS + P PA + +P GF +P G +
Sbjct: 242 LQRPARPEPDYSQTQSFGDGPSNVRISRPVYALPPA----SPAPSSARAQGFLAPASGGR 297
Query: 488 PYSLPSGLGGTEGVSPHEEHVSLVFPSSPAPRPQPYSLPAGYGG 531
P P G G ++G S F P PRPQ S G GG
Sbjct: 298 PLLEPVGFGQSQGPSARPVQQQPSF--QPQPRPQARS--GGGGG 337
>TAIR|locus:2154679 [details] [associations]
symbol:ENODL1 "early nodulin-like protein 1" species:3702
"Arabidopsis thaliana" [GO:0005507 "copper ion binding"
evidence=IEA;ISS] [GO:0005886 "plasma membrane" evidence=ISM;IDA]
[GO:0009055 "electron carrier activity" evidence=IEA] [GO:0031225
"anchored to membrane" evidence=TAS] InterPro:IPR003245
Pfam:PF02298 ProDom:PD003122 PROSITE:PS51485 GO:GO:0005886
EMBL:CP002688 GO:GO:0009055 GO:GO:0031225 GO:GO:0005507
EMBL:AB007644 Gene3D:2.60.40.420 InterPro:IPR008972 SUPFAM:SSF49503
ProtClustDB:CLSN2915882 HSSP:P29602 EMBL:BT026028 IPI:IPI00530005
RefSeq:NP_200198.1 UniGene:At.49170 ProteinModelPortal:Q9FN39
SMR:Q9FN39 PRIDE:Q9FN39 EnsemblPlants:AT5G53870.1 GeneID:835468
KEGG:ath:AT5G53870 TAIR:At5g53870 InParanoid:Q9FN39 OMA:AHAPSHS
Genevestigator:Q9FN39 Uniprot:Q9FN39
Length = 370
Score = 117 (46.2 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 62/223 (27%), Positives = 87/223 (39%)
Query: 304 VTANSVAQPNRKSSMETAPAMPV-PMQAGYNTGEGYKSVDGFKPDPVSGYPYANRLPSSH 362
V + S QP + S P PV P A + SV +P P S P ++ P+
Sbjct: 142 VPSVSPTQPPKSHS----PVSPVAPASAPSKSQPPRSSVSPAQP-PKSSSPISHT-PALS 195
Query: 363 PQKHAFFLAPVPVILPQPKPQEHHHDGPGQHNILNRSPSVQQESRGVTPGGDKTAADLPV 422
P HA +P P P P+ P H+ + S TP + A P
Sbjct: 196 PS-HATSHSPAT---PSPSPKS---PSPVSHSPSHSPAHTPSHSPAHTPS--HSPAHAPS 246
Query: 423 YSYKGVPLYIPRGRQSPSSTVQPTVESPSGQKSYYPGENSAPAGISSTESP-GDIGVSGF 481
+S P + P S S P+ SP+ KS P +S+PA +T SP S
Sbjct: 247 HSPAHAPSHSPAHAPSHSPAHSPS-HSPATPKS--PSPSSSPAQSPATPSPMTPQSPSPV 303
Query: 482 TSPGPQPYSLPSGLGGTEGVSPHEEHVSLVFPSSPAPRPQPYS 524
+SP P + PS SP E + ++PAP P+ S
Sbjct: 304 SSPSPDQSAAPSDQSTPLAPSPSETTPTADNITAPAPSPRTNS 346
Score = 41 (19.5 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 217 PESHPPVSP 225
P+SH PVSP
Sbjct: 151 PKSHSPVSP 159
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.134 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 536 525 0.00091 119 3 11 23 0.45 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 29
No. of states in DFA: 605 (64 KB)
Total size of DFA: 301 KB (2153 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 58.15u 0.11s 58.26t Elapsed: 00:00:15
Total cpu time: 58.15u 0.11s 58.26t Elapsed: 00:00:16
Start: Thu Aug 15 12:23:33 2013 End: Thu Aug 15 12:23:49 2013