RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5290
(536 letters)
>gnl|CDD|215582 PLN03111, PLN03111, DNA-directed RNA polymerase II subunit family
protein; Provisional.
Length = 206
Score = 199 bits (509), Expect = 4e-61
Identities = 72/146 (49%), Positives = 106/146 (72%), Gaps = 5/146 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
+++ DRGYLV+ EL+ TL +F+E+FG+KP R +L + DP+ ++ VFFP
Sbjct: 19 LEMLRDRGYLVSDSELNLTLSEFREKFGEKPK-----REDLRISAPKRSDPSKKILVFFP 73
Query: 61 DEPKIGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLI 120
+E K+G+KTIKTY +RM++E + RAI+V+Q+ +TP AKQ+L + K+ +E F E+ELL+
Sbjct: 74 EEEKVGVKTIKTYAERMKDENVSRAILVLQSKLTPFAKQALSEFNSKFKIEVFQETELLV 133
Query: 121 NITEHELVPEHIVLTPEEKQELLTRY 146
NIT+H LVP+H VLT EEK+ LL RY
Sbjct: 134 NITKHVLVPKHQVLTDEEKKTLLKRY 159
>gnl|CDD|173356 PTZ00061, PTZ00061, DNA-directed RNA polymerase; Provisional.
Length = 205
Score = 163 bits (413), Expect = 3e-47
Identities = 66/142 (46%), Positives = 98/142 (69%), Gaps = 5/142 (3%)
Query: 6 DRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDE-PK 64
DRGY++T E +T FKE+F E RS ++++ +H DPT+++ V+F DE K
Sbjct: 21 DRGYIITSQEKLETFATFKERF----EENERLRSRMLMVASHKTDPTNRIIVYFADETKK 76
Query: 65 IGIKTIKTYCQRMQEETIHRAIIVVQTGMTPSAKQSLVDMAPKYILEYFLESELLINITE 124
G+K I+ ++M+E I RAI+V Q +TP AK ++++ AP++I+E FLE+ELL+NIT+
Sbjct: 77 TGVKPIRELTEKMEEHDIQRAILVTQNVLTPFAKDAILEAAPRHIIENFLETELLVNITK 136
Query: 125 HELVPEHIVLTPEEKQELLTRY 146
HELVP+HI LT +EK LL RY
Sbjct: 137 HELVPKHIPLTDDEKLNLLQRY 158
>gnl|CDD|217772 pfam03871, RNA_pol_Rpb5_N, RNA polymerase Rpb5, N-terminal
domain. Rpb5 has a bipartite structure which includes
a eukaryote-specific N-terminal domain and a C-terminal
domain resembling the archaeal RNAP subunit H. The
N-terminal domain is involved in DNA binding and is
part of the jaw module in the RNA pol II structure.
This module is important for positioning the downstream
DNA.
Length = 92
Score = 115 bits (291), Expect = 3e-31
Identities = 33/78 (42%), Positives = 55/78 (70%), Gaps = 3/78 (3%)
Query: 1 MQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFP 60
M++ DRGYLVT++EL+ +L++FKE++ P RS+L DDP+ +++VFF
Sbjct: 18 MEMLRDRGYLVTEEELNLSLEEFKEKY---GDNGNPDRSKLTFSARPKDDPSGRIYVFFC 74
Query: 61 DEPKIGIKTIKTYCQRMQ 78
+E K+G+KTI+T+ +RM+
Sbjct: 75 EEEKVGVKTIRTFVERMK 92
>gnl|CDD|201651 pfam01191, RNA_pol_Rpb5_C, RNA polymerase Rpb5, C-terminal domain.
The assembly domain of Rpb5. The archaeal equivalent to
this domain is subunit H. Subunit H lacks the N-terminal
domain.
Length = 74
Score = 56.0 bits (136), Expect = 3e-10
Identities = 18/27 (66%), Positives = 24/27 (88%)
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
+NIT+HELVP+H VL+ EEK++LL RY
Sbjct: 1 VNITKHELVPKHEVLSEEEKKKLLKRY 27
>gnl|CDD|224923 COG2012, RPB5, DNA-directed RNA polymerase, subunit H, RpoH/RPB5
[Transcription].
Length = 80
Score = 48.5 bits (116), Expect = 2e-07
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 114 LESELLINITEHELVPEHIVLTPEEKQELLTRY 146
+ES L N+ +HELVPEH VL+ EE +E+L
Sbjct: 1 MESMLKFNVLDHELVPEHEVLSEEEAKEVLKEL 33
>gnl|CDD|236575 PRK09570, rpoH, DNA-directed RNA polymerase subunit H; Reviewed.
Length = 79
Score = 46.4 bits (111), Expect = 9e-07
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 120 INITEHELVPEHIVLTPEEKQELLTRY 146
++ +HELVPEH +L+ EE ++LL Y
Sbjct: 4 FDVLDHELVPEHEILSEEEAKKLLKEY 30
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 34.4 bits (79), Expect = 0.19
Identities = 33/193 (17%), Positives = 48/193 (24%), Gaps = 10/193 (5%)
Query: 345 KPDPVSGYPYANRLPSSHPQKHAFFLAPVPVILPQPKPQEHHHDGPGQHNILNRSPSVQQ 404
P P++ + A P P P D G + + S S
Sbjct: 189 PPAEPPPSTPPAAASPRPPRRSSPISASAS--SPAPAPGRSAADDAGASS-SDSSSSESS 245
Query: 405 ES----RGVTPGGDKTAADLPVYSYKGVPLYIPR---GRQSPSSTVQPTVESPSGQKSYY 457
P LP ++ P G S SS+ + SPS
Sbjct: 246 GCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGS 305
Query: 458 PGENSAPAGISSTESPGDIGVSGFTSPGPQPYSLPSGLGGTEGVSPHEEHVSLVFPSSPA 517
S+P SS+ S + S +S G + SP S
Sbjct: 306 GPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSP 365
Query: 518 PRPQPYSLPAGYG 530
+ S
Sbjct: 366 RKRPRPSRAPSSP 378
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 32.2 bits (73), Expect = 0.64
Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 4/98 (4%)
Query: 428 VPLYIPRGRQSPSSTVQPTVESPSGQKSYYPGENSAPAGISSTESPGDIGVSGFTSPGPQ 487
+PL PR P+ P P+ + + P P+ +S S S T PQ
Sbjct: 190 LPLSAPR--LGPADVFVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPST-TIAAPQ 246
Query: 488 PYSLPSGLGGTEGVSPHEEHVSLVFPSSPAPRPQPYSL 525
+ P G +P ++PAP Y L
Sbjct: 247 AGTTPEAEGTPAPPTPGGGEAPPA-NATPAPEASRYEL 283
>gnl|CDD|112355 pfam03532, OMS28_porin, OMS28 porin.
Length = 253
Score = 31.3 bits (70), Expect = 1.2
Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 25/155 (16%)
Query: 6 DRGYLVTQDELDQTLDQFKEQFGDKPSEKRPARSELIVLVAHNDDPTDQMFVFFPDEPKI 65
D L +D+++Q LD + D S+ R + LV ND + FV
Sbjct: 44 DNKKLDQKDQVNQALDTINKVTEDVSSKLEGVRESSLELVESNDAGVVKKFV-------- 95
Query: 66 GIKTIKTYCQRMQEETIHRAIIVVQ-TGMTPSAKQSLVDMAPKYILE------------Y 112
G ++ + + A IV + +GM +V+M+ K + E +
Sbjct: 96 GSMSLMSDVAKGTVVASQEATIVAKCSGMVAEGANKVVEMSKKAVQETQKAVSVAGEATF 155
Query: 113 FLESELLINIT----EHELVPEHIVLTPEEKQELL 143
+E ++++N + E EL E E K+ L+
Sbjct: 156 LIEKQIMLNKSPNNKELELTKEEFAKVDEVKETLM 190
>gnl|CDD|221371 pfam12004, DUF3498, Domain of unknown function (DUF3498). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 433 to 538 amino acids in length. This domain is
found associated with pfam00616, pfam00168. This domain
has two conserved sequence motifs: DLQ and PLSFQNP.
Length = 489
Score = 30.8 bits (69), Expect = 1.9
Identities = 26/135 (19%), Positives = 41/135 (30%)
Query: 371 APVPVILPQPKPQEHHHDGPGQHNILNRSPSVQQESRGVTPGGDKTAADLPVYSYKGVPL 430
AP+PV E+H N + S S + G ++
Sbjct: 186 APLPVSPRGDSGSENHSSASSHSNSEDCSLSAGFSNSGGEEFTRRSTDFTRRQLSLPDRQ 245
Query: 431 YIPRGRQSPSSTVQPTVESPSGQKSYYPGENSAPAGISSTESPGDIGVSGFTSPGPQPYS 490
+ P + S+ Q V+ PS P+ +SS S G + S + G +P
Sbjct: 246 HQPALPRQNSAGPQRRVDQPSPPGGGSHRGRIPPSLLSSLPSEGSMLSSEWPQSGARPRQ 305
Query: 491 LPSGLGGTEGVSPHE 505
S G
Sbjct: 306 QSSSSKGDSPELRPA 320
>gnl|CDD|221480 pfam12238, MSA-2c, Merozoite surface antigen 2c. This family of
proteins is found in eukaryotes. Proteins in this family
are typically between 263 and 318 amino acids in length.
There is a conserved SFT sequence motif. MSA-2 is a
plasma membrane glycoprotein which can be found in
Babesia bovis species.
Length = 201
Score = 29.8 bits (67), Expect = 2.5
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 19/79 (24%)
Query: 453 QKSYYPGENSAPAGISSTESPGDIGVSGFTSPGPQPYSLPSGLGGTEGVSPHEEHVSLVF 512
YY ++S+ G +ST P D + TS P P + +
Sbjct: 138 PAEYYSPKHSSSQG-TSTTRPSDGSATPNTSAPPTPGNPAAQ------------------ 178
Query: 513 PSSPAPRPQPYSLPAGYGG 531
P PA P+ +GG
Sbjct: 179 PEKPAETPKGNGSSFTFGG 197
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 30.2 bits (68), Expect = 3.3
Identities = 27/183 (14%), Positives = 47/183 (25%), Gaps = 16/183 (8%)
Query: 348 PVSGYPYANRLPSSHPQKHAFFLAPVPVILPQPKPQEHHHDGPGQHNILNRSPSVQQESR 407
PV+ A P++ A A P + + + + +++
Sbjct: 381 PVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQAS 440
Query: 408 GVTPGGDKTAADLPVYSYKGVPLYIPRGRQSPSSTVQPTVESPSGQKSYYPGENSAPAGI 467
PGG A P R + + + + P APA
Sbjct: 441 ARGPGGAPAPAPAPA------AAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADD 494
Query: 468 SS---TESPGDIGVSGFTSPGPQPYSLPSGLGGTEGVSPHEEHVSLVFPSSPAPRPQPYS 524
E P + P P + G S + + + P P +
Sbjct: 495 DPPPWEELPPEF-------ASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAA 547
Query: 525 LPA 527
PA
Sbjct: 548 APA 550
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 29.8 bits (67), Expect = 4.3
Identities = 34/210 (16%), Positives = 51/210 (24%), Gaps = 31/210 (14%)
Query: 322 PAMPVPMQAGYNTGEGYKSVDGFKPDPVSGYPYANRLPSSHPQKHAFFLAPVPVILPQPK 381
PA P P + E + P GY P + +
Sbjct: 95 PAPPPPHARRTSEPELPR----PGRRPYEGYGG----PRADDRPPGLPRQDQLPTARPAY 146
Query: 382 PQEHHHDGPGQHNILNRSPSVQQESRGVTPGGDKTAADLPVYSYKGVPLYIPRGRQSPSS 441
P PG QQ+ G P + Y+ + P P
Sbjct: 147 PAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPA--SYAPEQERDREPYDAGRPE- 203
Query: 442 TVQPTVESPSGQKSYYPGENSAPAGISSTESPGDIGVSGFTSPGPQPYSLPSGLGGTEGV 501
+ +P + T+ P P P + GG
Sbjct: 204 ------YDQRRRDYDHPRPDWDRPRRDRTDRPE-----------PPPGAGHVHRGGPGPP 246
Query: 502 SPHEEHVSLVFPSSPAP---RPQPYSLPAG 528
+ V + PS+P P +P P P
Sbjct: 247 ERDDAPVVPIRPSAPGPLAAQPAPAPGPGE 276
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 29.8 bits (66), Expect = 4.6
Identities = 30/125 (24%), Positives = 40/125 (32%), Gaps = 32/125 (25%)
Query: 433 PRGRQSPSSTVQPTVESPSGQ-KSYYPGENSAPAGISSTESPGDIGVSGFTSPGPQPYSL 491
P G S + P V S + P SAP+ ++S + G G +SP Q +
Sbjct: 543 PTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTG--SSPTSQQPGI 600
Query: 492 PSGLGGTEGVS--------------------------PHEEHVSLVFPSSPAPRPQPYSL 525
PS T + P HVS SP P P S
Sbjct: 601 PSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVS---TLSPGPGPGTTSQ 657
Query: 526 PAGYG 530
+G G
Sbjct: 658 VSGPG 662
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 29.9 bits (67), Expect = 4.7
Identities = 24/173 (13%), Positives = 41/173 (23%), Gaps = 10/173 (5%)
Query: 355 ANRLPSSHPQKHAFFLAPVPVI-LPQPKPQEHHHDGPGQHNILNRSPSVQQE-SRGVTPG 412
L L+ P+ + E D HN + S + S+
Sbjct: 227 TKELVPVQNSGGNHSLSKSSNSQTPELEYSEKGKDHHHSHNHQHHSIGINNHHSKHADSK 286
Query: 413 -------GDKTAADLPVYSYKGVPLYIPRGRQSPSSTVQPTVESPSGQKSYYPGENSAPA 465
+ + P S S ++ + S S + S NS+P
Sbjct: 287 LQTIEVIENHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKHSNRNKSNSSPK 346
Query: 466 GISSTESPGDIGVSGFTSPGPQ-PYSLPSGLGGTEGVSPHEEHVSLVFPSSPA 517
SS + SG ++ + V P
Sbjct: 347 SHSSANGSVPSSSVSDNESKQKRASKSSSGARDSKKDASGMSANGTVENCIPE 399
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 29.9 bits (67), Expect = 5.0
Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 9/161 (5%)
Query: 372 PVPVILPQPKPQEHHHDGPGQHNILNRSPSVQQESRGVTPGGDKTAADLPVYSYKGVPLY 431
P P P+P P P P +R +P A V + P
Sbjct: 2702 PPPPPTPEPAPHALVSATP--------LPPGPAAARQASPALPAAPAPPAVPAGPATPGG 2753
Query: 432 IPRGRQSPSSTVQPTVESPSGQKSYYPGENSAPAGISSTESPGDIGVSGFTSPGPQPYSL 491
R + P++ P P+ + P + PA S +ES + + P
Sbjct: 2754 PARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLA 2813
Query: 492 P-SGLGGTEGVSPHEEHVSLVFPSSPAPRPQPYSLPAGYGG 531
P + L + + P++P P P P GG
Sbjct: 2814 PAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGG 2854
Score = 29.5 bits (66), Expect = 6.7
Identities = 42/202 (20%), Positives = 62/202 (30%), Gaps = 20/202 (9%)
Query: 346 PDPVSGYPYANRLPSSHPQKHAFFLAPVPVILPQPKPQEHHHDGPGQHNILNRSPSVQQE 405
P P+ +A P P A P P P + PG+ + R+ + +
Sbjct: 2614 PSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRA 2673
Query: 406 SRGVTP--GGDKTAADLPVYSYKGV-----PLYIPRGRQSPSSTVQPTVESPSGQKSYYP 458
++ +P + AA V S + P P + P P+ + P
Sbjct: 2674 AQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASP 2733
Query: 459 GENSAPAGISSTESPGDIG----------VSGFTSPGP---QPYSLPSGLGGTEGVSPHE 505
+APA + P G +G +P P P L S E
Sbjct: 2734 ALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSE 2793
Query: 506 EHVSLVFPSSPAPRPQPYSLPA 527
SL P PA P PA
Sbjct: 2794 SRESLPSPWDPADPPAAVLAPA 2815
>gnl|CDD|227634 COG5324, COG5324, Uncharacterized conserved protein [Function
unknown].
Length = 758
Score = 29.6 bits (66), Expect = 5.0
Identities = 14/65 (21%), Positives = 28/65 (43%)
Query: 108 YILEYFLESELLINITEHELVPEHIVLTPEEKQELLTRYWRSCVTIFWTQKRTGEEHFLK 167
+IL+Y E L E++ + + E ++L + S V + ++ ++FL
Sbjct: 191 HILKYDKEHLGLYLHGENKNDLDFHTIDLEFVEKLAKKVGFSSVILTKKEELRRLKNFLY 250
Query: 168 ECSFE 172
S E
Sbjct: 251 NFSHE 255
>gnl|CDD|192433 pfam09970, DUF2204, Nucleotidyl transferase of unknown function
(DUF2204). This domain, found in various hypothetical
archaeal proteins, has no known function. However, this
family was identified as belonging to the
nucleotidyltransferase superfamily.
Length = 181
Score = 28.4 bits (64), Expect = 5.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 109 ILEYFLESELLINITEHELVPEHIVLTPEEKQELL 143
I Y E ++ I+ L+ EHI L PEE+ E +
Sbjct: 144 IARYIPEGKISIDK---RLIKEHIELFPEEESESI 175
>gnl|CDD|224118 COG1197, Mfd, Transcription-repair coupling factor (superfamily II
helicase) [DNA replication, recombination, and repair /
Transcription].
Length = 1139
Score = 29.2 bits (66), Expect = 7.4
Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 40/198 (20%)
Query: 119 LINITEHELVPEH-IVLTPEEKQELLTRYWRSCV---------TIFWTQKRTGEEHFLKE 168
L + E EL+P +L E + +Y + + ++ G E+FL
Sbjct: 198 LEEVEEIELLPASEFILDEEAIEAFRKQYLETFEPKRDDALYEALSSGRRFAGLEYFLPL 257
Query: 169 CSFESATVKSVYPSLKAPIFQLLQQPLFLLVKTSDRANAVFLPQGLSTPESH------PP 222
+ AT+ P L ++ + A F + E+ PP
Sbjct: 258 FYEDLATLFDYLPK----------NTLIVVDERVLEAAEEFEKEVADFYEARLSDGEYPP 307
Query: 223 VSP-SIDTMLRSYEERHSLVFSLAHFPFKHFKEVTLGDFLTNGKSLKQGVPLTDIPVMAF 281
+ P ++ E V ++ FP S ++ + L +P +AF
Sbjct: 308 LPPEALYLSAEELFELLKPVPRISLFPEHL-----------PELSAEEIINLDPLPDLAF 356
Query: 282 YTKHE--LDELKPFFKFF 297
+ +H+ LD L+ + F
Sbjct: 357 FGQHKEPLDALRKEIERF 374
>gnl|CDD|238793 cd01535, 4RHOD_Repeat_4, Member of the Rhodanese Homology Domain
superfamily, repeat 4. This CD includes putative
rhodanese-related sulfurtransferases which contain 4
copies of the Rhodanese Homology Domain. This CD aligns
the 4th repeat which, in general, contains the putative
catalytic Cys residue.
Length = 145
Score = 27.9 bits (62), Expect = 7.5
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 190 LLQQPLFLLVKTSDRANAVFLPQGLSTPESHPPVSPSIDTMLRSYEERHS 239
L +P+F+L + A LP + + E+ SP ID R YE +
Sbjct: 72 LTVKPVFVLEGGTAAWIAAGLP--VESGETRLA-SPRIDRYRRPYEGTDN 118
>gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA
replication, recombination, and repair].
Length = 638
Score = 28.8 bits (65), Expect = 8.3
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 101 LVDMAP---KYILEYFLESELLINITEHELVPEHIVLTPEEKQELL 143
LVD + + E + + L+P + L+PEE L
Sbjct: 473 LVDQHAAHERILYEKLKNELGNVGELQPLLIPIRLELSPEEADVLE 518
>gnl|CDD|107381 cd06386, PBP1_NPR_C_like, Ligand-binding domain of type C
natriuretic peptide receptor. Ligand-binding domain of
type C natriuretic peptide receptor (NPR-C). NPR-C is
found in atrial, mesentery, placenta, lung, kidney,
venous tissue, aortic smooth muscle, and aortic
endothelial cells. The affinity of NPR-C for natriuretic
peptides is ANP>CNP>BNP. The extracellular domain of
NPR-C is about 30% identical to NPR-A and NPR-B.
However, unlike the cyclase-linked receptors, it
contains only 37 intracellular amino acids and no
guanylyl cyclase activity. Major function of NPR-C is to
clear natriuretic peptides from the circulation or
extracellular surroundings through constitutive
receptor-mediated internalization and degradation.
Length = 387
Score = 28.6 bits (64), Expect = 8.7
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 208 VFLPQGLSTPESHPPVSPSIDTMLRSYEERHSLVFSLAHFPFKHFKEVTLGD 259
V LPQ S S V+P+I+ R E L F F H+++ G+
Sbjct: 4 VLLPQNNSYLFSSARVAPAIEYAQRRLEANRLL-FPGFRFNV-HYEDSDCGN 53
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 28.6 bits (64), Expect = 9.0
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 458 PGENSAPAGISSTESPGDIGVSGFTSPGPQPYSLPSGLGGTEGVSPHEEHVSL--VFPSS 515
PG +S+ A +S E +I + G + G +P+ L G G P + L FP S
Sbjct: 127 PGGSSSGAAVSVAEGTSEIAI-GSDTGG--SVRIPAALNGLVGFKPTARRIPLEGAFPLS 183
Query: 516 PA 517
P+
Sbjct: 184 PS 185
>gnl|CDD|234066 TIGR02940, anfO_nitrog, Fe-only nitrogenase accessory protein AnfO.
Members of this protein family, called Anf1 in
Rhodobacter capsulatus and AnfO in Azotobacter
vinelandii, are found only in species with the Fe-only
nitrogenase and are encoded immediately downstream of
the structural genes in the above named species.
Length = 214
Score = 28.2 bits (63), Expect = 9.9
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 178 SVYPSLKAPIFQLLQQPLFLLVKTSDRANAVFLPQGLSTPESHPPVSPSIDTMLRSYEER 237
+V ++ + QL +FL + A ++ G S PV +D++ + ER
Sbjct: 49 AVRAAVADMVKQLDDCRVFLASEVRGIAYSLLQEMGFQVWLSEGPVLDQLDSVAKKELER 108
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.134 0.401
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,714,234
Number of extensions: 2708328
Number of successful extensions: 1894
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1881
Number of HSP's successfully gapped: 59
Length of query: 536
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 434
Effective length of database: 6,413,494
Effective search space: 2783456396
Effective search space used: 2783456396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (27.5 bits)