BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5293
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 92/136 (67%), Gaps = 4/136 (2%)
Query: 10 LSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCY-GGHAIGDAFRLIQGGHADVMIA 68
+SP+FV NM AG +SI K V C G HA+GD+FR I G ADVM+A
Sbjct: 154 VSPFFVPKILVNMA-AGQVSIRYKLKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVA 212
Query: 69 GAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHA 128
G +SCIS LS+A F R RAL+T N++P A RPF +RDGFVMGEG+A+LVLEE +HA
Sbjct: 213 GGTDSCISPLSLAGFSRARALST--NSDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHA 270
Query: 129 LARSANIYAEIIGYGM 144
+ R A IYAE++GYG+
Sbjct: 271 VQRRARIYAEVLGYGL 286
Score = 134 bits (337), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 91/152 (59%), Gaps = 2/152 (1%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
G+SGD H+T+P +G GAL M AL DA + P +ISYINAHATSTPLGD E KAI
Sbjct: 285 GLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKH 344
Query: 266 LFP--AQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYEC 323
LF A L VSSTK +E+AFT LA + +PP +NL+ E
Sbjct: 345 LFKDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYV 404
Query: 324 PTAVTEWKTDGRRVALKNSFGFGGTNACLCIA 355
P EWKT+ R + L NSFGFGGTNA LCIA
Sbjct: 405 PLKAQEWKTEKRFIGLTNSFGFGGTNATLCIA 436
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 90/172 (52%), Gaps = 8/172 (4%)
Query: 41 VYCLCYGGHAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQA 100
V L G H + D RLI G V + G I S+AA+ + QFN + +
Sbjct: 31 VTPLGVGTHLVWD--RLIGGESGIVSLVGEEYKSIP-CSVAAYVPRGSDEGQFNEQNFVS 87
Query: 101 SRPFDKRRDGFVMGEGSAILVLEELD-HALARSANIYAEI-IGYGMIDLSDVLSSN--NA 156
+M G+A L +++ H + + + + IG GMI L +V+S N
Sbjct: 88 KSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGMGMIPL-EVVSETALNF 146
Query: 157 LQGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIGMS 208
YNK+SP+FV +IL NM+AGQ+SI + +GPNH VSTAC TGAHA+G S
Sbjct: 147 QTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTGAHAVGDS 198
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 95/136 (69%), Gaps = 2/136 (1%)
Query: 10 LSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLC-YGGHAIGDAFRLIQGGHADVMIA 68
+SP+F+ N+ +G +SI + V C G HAIGDA RLI G ADVM+A
Sbjct: 144 ISPFFIPGRLINLA-SGHVSIKHKLRGPNHSVVTACATGTHAIGDAARLIAFGDADVMVA 202
Query: 69 GAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHA 128
G ES +S++S+A F +AL+T+ N++P ASRP+D+ RDGFVMGEG+ I+VLEEL+HA
Sbjct: 203 GGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRDGFVMGEGAGIVVLEELEHA 262
Query: 129 LARSANIYAEIIGYGM 144
LAR A IYAE+IGYGM
Sbjct: 263 LARGAKIYAEVIGYGM 278
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 84/156 (53%), Gaps = 6/156 (3%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
GMSGD H+T+P E G GA M AL A + P +I YINAH TST + D IEL A+
Sbjct: 277 GMSGDAFHITAPTESGEGAQRCMVAALKRAGIVPDEIDYINAHGTST-MADTIELGAVER 335
Query: 266 LF--PAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYEC 323
+ A ++ +SSTK E+ F+ LA+ + + P +NL++P +
Sbjct: 336 VVGEAAAKISMSSTKSSIGHLLGAAGAAEAVFSTLAIRDNIAPATLNLDNPAAQTRIDLV 395
Query: 324 PTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYKS 359
P E K D VAL NSFGFGGTNA L + Y +
Sbjct: 396 PHKPRERKID---VALSNSFGFGGTNASLVLRRYTA 428
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 162 NKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
++SP+F+ L N+++G +SI+H +GPNH V TACATG HAIG
Sbjct: 142 RRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACATGTHAIG 186
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/136 (52%), Positives = 90/136 (66%), Gaps = 2/136 (1%)
Query: 10 LSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLC-YGGHAIGDAFRLIQGGHADVMIA 68
LSP+F+ NM +G +S+ + C G H+IGDA R+IQ G ADVM+A
Sbjct: 145 LSPFFIPKILVNMA-SGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVA 203
Query: 69 GAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHA 128
G ES I LS+A F R RAL+T+FN+ P +ASRPFD RDGFV+GEGS ++VLEE +HA
Sbjct: 204 GGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCDRDGFVIGEGSGVIVLEEYEHA 263
Query: 129 LARSANIYAEIIGYGM 144
R A IYAE+ GYGM
Sbjct: 264 KRRGAKIYAELCGYGM 279
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 92/154 (59%), Gaps = 6/154 (3%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
GMSGD HH+T P EDG+GA+LAMTRAL + L P I Y+NAHATSTP+GD +E +AI +
Sbjct: 278 GMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKT 337
Query: 266 LFPAQ----RLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGY 321
+F L SSTK +E+ F+ILA+H G+ P +N+++P
Sbjct: 338 VFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKR 397
Query: 322 ECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIA 355
P +T K R A+ NSFGFGGTNA L A
Sbjct: 398 FMP--LTTSKKMLVRTAMSNSFGFGGTNASLLFA 429
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 38/45 (84%)
Query: 162 NKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
+LSP+F+ +IL NM++G +S+++GFQGPNH TACATGAH+IG
Sbjct: 143 RRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATGAHSIG 187
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 91/136 (66%), Gaps = 4/136 (2%)
Query: 10 LSPYFVNPFFPNMVPAGAISIDMDSKVQTLCV-YCLCYGGHAIGDAFRLIQGGHADVMIA 68
+SP+FV NM AG +SI K V G HA+GD+FR I G ADVM+A
Sbjct: 160 VSPFFVPKILVNMA-AGQVSIRYKLKGPNHAVSTAXTTGAHAVGDSFRFIAHGDADVMVA 218
Query: 69 GAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHA 128
G +SCIS LS+A F R RAL+T N++P A RPF +RDGFVMGEG+A+LVLEE +HA
Sbjct: 219 GGTDSCISPLSLAGFSRARALST--NSDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHA 276
Query: 129 LARSANIYAEIIGYGM 144
+ R A IYAE++GYG+
Sbjct: 277 VQRRARIYAEVLGYGL 292
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 91/152 (59%), Gaps = 2/152 (1%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
G+SGD H+T+P +G GAL M AL DA + P +ISYINAHATSTPLGD E KAI
Sbjct: 291 GLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKH 350
Query: 266 LFP--AQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYEC 323
LF A L VSSTK +E+AFT LA + +PP +NL+ E
Sbjct: 351 LFKDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYV 410
Query: 324 PTAVTEWKTDGRRVALKNSFGFGGTNACLCIA 355
P EWKT+ R + L NSFGFGGTNA LCIA
Sbjct: 411 PLKAQEWKTEKRFIGLTNSFGFGGTNATLCIA 442
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 87/171 (50%), Gaps = 6/171 (3%)
Query: 41 VYCLCYGGHAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQA 100
V L G H + D RLI G V + G I S+AA+ + QFN + +
Sbjct: 37 VTPLGVGTHLVWD--RLIGGESGIVSLVGEEYKSIP-CSVAAYVPRGSDEGQFNEQNFVS 93
Query: 101 SRPFDKRRDGFVMGEGSAILVLEELD-HALARSANIYAEI-IGYGMIDLSDVLSSNNALQ 158
+M G+A L +++ H + + + + IG GMI L V + Q
Sbjct: 94 KSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGMGMIPLEVVSETALNFQ 153
Query: 159 GS-YNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIGMS 208
YNK+SP+FV +IL NM+AGQ+SI + +GPNH VSTA TGAHA+G S
Sbjct: 154 TKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTAXTTGAHAVGDS 204
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/135 (51%), Positives = 91/135 (67%), Gaps = 2/135 (1%)
Query: 10 LSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQGGHADVMIA 68
LSP+ + PFF + + AG ISI + C C AIGDA R+I+ G ADV++A
Sbjct: 159 LSPFTI-PFFLSNLAAGQISIKHRFRGPLGCPVTACAASVQAIGDAMRMIRTGEADVVLA 217
Query: 69 GAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHA 128
G AE+ ++S+ F RAL+T F+ EP +ASRPFD+ RDGFVMGEG+A++V+E LDHA
Sbjct: 218 GGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGFVMGEGAAMVVVESLDHA 277
Query: 129 LARSANIYAEIIGYG 143
LAR A AEIIGYG
Sbjct: 278 LARGARPIAEIIGYG 292
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 96/176 (54%), Gaps = 21/176 (11%)
Query: 197 ACATGAHAI------GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
A A GA I G + D +H+T+ +DG GA+ AM AL +++P + Y+NAHAT
Sbjct: 277 ALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHAT 336
Query: 251 STPLGDVIELKAIGSLF-----PAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLV 305
STP+GD E++A+ ++F PA +SSTK +E+AF+ILA+ +G++
Sbjct: 337 STPVGDAGEIEALKTVFGVGAGPA----ISSTKSATGHLLGAAGAIEAAFSILALRDGVL 392
Query: 306 PPNVNLEDPCEEAGGYEC--PTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYKS 359
P +NLE P A G + P A + +AL N FGFGG NA + Y S
Sbjct: 393 PGTLNLEHPDPAADGLDLIGPAA----RHVPVEIALSNGFGFGGVNASVLFRRYPS 444
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 124 ELDHALARSANIYAEIIGYGMIDLSDVLSSNNALQGSYNKLSPYFVTRILPNMSAGQISI 183
E + R+A + A IG G L++ + +LSP+ + L N++AGQISI
Sbjct: 122 EAEQQRERTATVVASGIG-GFPGLAEAVRIGETR--GVRRLSPFTIPFFLSNLAAGQISI 178
Query: 184 EHGFQGPNHCVSTACATGAHAIG 206
+H F+GP C TACA AIG
Sbjct: 179 KHRFRGPLGCPVTACAASVQAIG 201
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 93/136 (68%), Gaps = 2/136 (1%)
Query: 10 LSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLC-YGGHAIGDAFRLIQGGHADVMIA 68
+SP+F+ N+ +G +SI + V C G HAIGDA RLI G ADVM+A
Sbjct: 140 ISPFFIPGRLINLA-SGYVSIKYGLRGPNHSVVTACSTGAHAIGDAARLIALGDADVMLA 198
Query: 69 GAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHA 128
G ES I+++S+A F RAL+T N++P +ASRP+D RDGFVMGEG+AI+VLEEL+HA
Sbjct: 199 GGTESPINRISLAGFSACRALSTCRNDDPERASRPYDVDRDGFVMGEGAAIVVLEELEHA 258
Query: 129 LARSANIYAEIIGYGM 144
R A IYAEIIGYG+
Sbjct: 259 KKRGARIYAEIIGYGL 274
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
G+SGD +H+T+P E G GA +M AL A ++ ++ YINAH TST + DVIEL A+
Sbjct: 273 GLSGDAYHITAPSESGEGAQRSMMAALKRAQVNVSELDYINAHGTST-MADVIELAAVER 331
Query: 266 L--FPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYEC 323
+ + A ++ +SSTK E+ F +LA+ + + P +NLE+P E
Sbjct: 332 VLGYYAPQVSMSSTKSSIGHLLGAAGAAEAIFCVLAIRDNIAPATLNLENPSIETKIDLV 391
Query: 324 PTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEY 357
P E K D L NSFGFGGTNA L + +
Sbjct: 392 PHKPRERKID---TVLSNSFGFGGTNASLVMRRF 422
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 36/45 (80%)
Query: 162 NKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
++SP+F+ L N+++G +SI++G +GPNH V TAC+TGAHAIG
Sbjct: 138 RRISPFFIPGRLINLASGYVSIKYGLRGPNHSVVTACSTGAHAIG 182
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/135 (51%), Positives = 91/135 (67%), Gaps = 2/135 (1%)
Query: 10 LSPYFVNPFFPNMVPAGAISIDMDSKVQTLC-VYCLCYGGHAIGDAFRLIQGGHADVMIA 68
LSP+ + PFF + + AG ISI + C V AIGDA R+I+ G ADV++A
Sbjct: 159 LSPFTI-PFFLSNLAAGQISIKHRFRGPLGCPVTAXAASVQAIGDAMRMIRTGEADVVLA 217
Query: 69 GAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHA 128
G AE+ ++S+ F RAL+T F+ EP +ASRPFD+ RDGFVMGEG+A++V+E LDHA
Sbjct: 218 GGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGFVMGEGAAMVVVESLDHA 277
Query: 129 LARSANIYAEIIGYG 143
LAR A AEIIGYG
Sbjct: 278 LARGARPIAEIIGYG 292
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 96/176 (54%), Gaps = 21/176 (11%)
Query: 197 ACATGAHAI------GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
A A GA I G + D +H+T+ +DG GA+ AM AL +++P + Y+NAHAT
Sbjct: 277 ALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHAT 336
Query: 251 STPLGDVIELKAIGSLF-----PAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLV 305
STP+GD E++A+ ++F PA +SSTK +E+AF+ILA+ +G++
Sbjct: 337 STPVGDAGEIEALKTVFGVGAGPA----ISSTKSATGHLLGAAGAIEAAFSILALRDGVL 392
Query: 306 PPNVNLEDPCEEAGGYEC--PTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYKS 359
P +NLE P A G + P A + +AL N FGFGG NA + Y S
Sbjct: 393 PGTLNLEHPDPAADGLDLIGPAA----RHVPVEIALSNGFGFGGVNASVLFRRYPS 444
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 124 ELDHALARSANIYAEIIGYGMIDLSDVLSSNNALQGSYNKLSPYFVTRILPNMSAGQISI 183
E + R+A + A IG G L++ + +LSP+ + L N++AGQISI
Sbjct: 122 EAEQQRERTATVVASGIG-GFPGLAEAVRIGETR--GVRRLSPFTIPFFLSNLAAGQISI 178
Query: 184 EHGFQGPNHCVSTACATGAHAIG 206
+H F+GP C TA A AIG
Sbjct: 179 KHRFRGPLGCPVTAXAASVQAIG 201
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 89/135 (65%), Gaps = 3/135 (2%)
Query: 11 SPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQGGHADVMIAG 69
SP+ + NM +G +I++ +K C C G +AIGDAFRL+Q G+A MI G
Sbjct: 134 SPFMIPMMIANMA-SGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICG 192
Query: 70 AAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHAL 129
E+ I+ LS A F RAL+ + N++P ASRPFDK RDGFVMGEGS IL+LEEL+ AL
Sbjct: 193 GTEAAITPLSYAGFASARALSFR-NDDPLHASRPFDKDRDGFVMGEGSGILILEELESAL 251
Query: 130 ARSANIYAEIIGYGM 144
AR A IY E++GY M
Sbjct: 252 ARGAKIYGEMVGYAM 266
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 89/173 (51%), Gaps = 11/173 (6%)
Query: 194 VSTACATGAHAIG------MSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINA 247
+ +A A GA G M+ D +H+T+P DGRGA A+ AL D+ L P +SYINA
Sbjct: 247 LESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINA 306
Query: 248 HATSTPLGDVIELKAIGSLFP--AQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLV 305
H TSTP DV E +AI A + VSSTK +E+ T++A+ E V
Sbjct: 307 HGTSTPANDVTETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKV 366
Query: 306 PPNVNLEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYK 358
PP +NLE+P E P D VAL NSFGFGG N L +Y+
Sbjct: 367 PPTINLENPDPECDLDYVPGQSRALIVD---VALSNSFGFGGHNVTLAFKKYQ 416
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 118 AILVLEELDHALARSANIYAEIIGYGMIDLSDVLSSNNA--LQGSYNKLSPYFVTRILPN 175
A LV+ EL+ A+ +IG G+ L VL L ++ SP+ + ++ N
Sbjct: 92 AKLVINELN------ADEIGVLIGTGIGGLK-VLEDQQTILLDKGPSRCSPFMIPMMIAN 144
Query: 176 MSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
M++G +I G +GPN+C TACA G++AIG
Sbjct: 145 MASGLTAINLGAKGPNNCTVTACAAGSNAIG 175
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 89/135 (65%), Gaps = 4/135 (2%)
Query: 10 LSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLC-YGGHAIGDAFRLIQGGHADVMIA 68
+SP+FV P+M G +SID+ +K C G ++IG+AF+++Q G AD MI
Sbjct: 154 VSPFFVPMLIPDMA-TGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQRGDADAMIT 212
Query: 69 GAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHA 128
G E+ I+ ++IA F RAL+T N++ A RPF + RDGFVMGEG+ ILV+E L+ A
Sbjct: 213 GGTEAPITHMAIAGFSASRALST--NDDIETACRPFQEGRDGFVMGEGAGILVIESLESA 270
Query: 129 LARSANIYAEIIGYG 143
AR ANIYAEI+GYG
Sbjct: 271 QARGANIYAEIVGYG 285
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 5/156 (3%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
G +GD +H+T+P +G G AM A+ DA + P D+ Y+NAH TSTP+GD+ E+KAI +
Sbjct: 285 GTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKN 344
Query: 266 LF--PAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYEC 323
F A+ L VSSTK +E+ F+ L++ + V P ++ P E
Sbjct: 345 TFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDIV 404
Query: 324 PTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYKS 359
P + A+ NS GFGG NA L ++++
Sbjct: 405 PNEAQDLDI---TYAMSNSLGFGGHNAVLVFKKFEA 437
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 34/44 (77%)
Query: 163 KLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
++SP+FV ++P+M+ GQ+SI+ G +GPN TACATG ++IG
Sbjct: 153 RVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIG 196
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 88/150 (58%), Gaps = 6/150 (4%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
G S D HH+T P +G+GA LAM RAL DA ++P + YINAH TSTP+GD E+ AI
Sbjct: 259 GRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKR 318
Query: 266 LF--PAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYEC 323
+F A+RLMVSSTK +E+ T+ A++ G++PP +NLEDP E
Sbjct: 319 VFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPELDLDFV 378
Query: 324 PTAVTEWKTDGRRVALKNSFGFGGTNACLC 353
P E K D AL NSF FGG NA L
Sbjct: 379 PEP-REAKVD---YALSNSFAFGGHNAVLA 404
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 88/143 (61%), Gaps = 4/143 (2%)
Query: 2 LYRGATTTLSPYFVNPFFPNMVPAG-AISIDMDSKVQTLCVYCLCYGGHAIGDAFRLIQG 60
L RG +SP+F+ NM A A+ T+ C G A+G A R+IQ
Sbjct: 120 LERG-PNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTAC-ATGADALGSALRMIQL 177
Query: 61 GHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAIL 120
G AD+++AG E+ I+ ++I AF +RAL+T+ N EP +ASRPF RDGFVMGEG+ +L
Sbjct: 178 GEADLVLAGGTEAAITPMAIGAFAVMRALSTR-NEEPEKASRPFTLSRDGFVMGEGAGVL 236
Query: 121 VLEELDHALARSANIYAEIIGYG 143
VLE +HA R A IYAE++G+G
Sbjct: 237 VLEAYEHAKKRGARIYAELVGFG 259
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 157 LQGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
L+ N++SP+F+ ++ NM++ I++ +GF GP+ V TACATGA A+G
Sbjct: 120 LERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALG 169
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 90/144 (62%), Gaps = 3/144 (2%)
Query: 2 LYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQG 60
L G +SP+FV NMV AG ++I + ++ + C G H IG A R+I
Sbjct: 121 LMNGGPRKISPFFVPSTIVNMV-AGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAY 179
Query: 61 GHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAIL 120
G ADVM+AG AE + L + F RAL+T+ N+ P ASRP+DK RDGFV+G+G+ +L
Sbjct: 180 GDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGFVLGDGAGML 238
Query: 121 VLEELDHALARSANIYAEIIGYGM 144
VLEE +HA R A IYAE++G+GM
Sbjct: 239 VLEEYEHAKKRGAKIYAELVGFGM 262
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 86/154 (55%), Gaps = 4/154 (2%)
Query: 205 IGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIG 264
GMS D +H+TSP E+G GA LAM AL DA + I Y+NAH TSTP GD E +A+
Sbjct: 260 FGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVK 319
Query: 265 SLF--PAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYE 322
++F A R++VSSTK +ES ++ILA+ + VPP +NL++P E
Sbjct: 320 TIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDF 379
Query: 323 CPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAE 356
P + G L NSFGFGGTN L +
Sbjct: 380 VPHEARQ--VSGMEYTLCNSFGFGGTNGSLIFKK 411
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 157 LQGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
+ G K+SP+FV + NM AG ++I +G +GP+ ++TAC +G H IG
Sbjct: 122 MNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIG 171
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 90/144 (62%), Gaps = 3/144 (2%)
Query: 2 LYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQG 60
L G +SP+FV NMV AG ++I + ++ + C G H IG A R+I
Sbjct: 136 LMNGGPRKISPFFVPSTIVNMV-AGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAY 194
Query: 61 GHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAIL 120
G ADVM+AG AE + L + F RAL+T+ N+ P ASRP+DK RDGFV+G+G+ +L
Sbjct: 195 GDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGFVLGDGAGML 253
Query: 121 VLEELDHALARSANIYAEIIGYGM 144
VLEE +HA R A IYAE++G+GM
Sbjct: 254 VLEEYEHAKKRGAKIYAELVGFGM 277
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 85/154 (55%), Gaps = 4/154 (2%)
Query: 205 IGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIG 264
GMS D +H+TSP E+G GA LAM AL DA + I Y+NAH TSTP GD E +A+
Sbjct: 275 FGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVK 334
Query: 265 SLF--PAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYE 322
++F A R++VSST +ES ++ILA+ + VPP +NL++P E
Sbjct: 335 TIFGEAASRVLVSSTASMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDF 394
Query: 323 CPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAE 356
P + G L NSFGFGGTN L +
Sbjct: 395 VPHEARQ--VSGMEYTLCNSFGFGGTNGSLIFKK 426
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 157 LQGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
+ G K+SP+FV + NM AG ++I +G +GP+ ++TAC +G H IG
Sbjct: 137 MNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIG 186
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 90/144 (62%), Gaps = 3/144 (2%)
Query: 2 LYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQG 60
L G +SP+FV NMV AG ++I + ++ + C G H IG A R+I
Sbjct: 136 LMNGGPRKISPFFVPSTIVNMV-AGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAY 194
Query: 61 GHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAIL 120
G ADVM+AG AE + L + F RAL+T+ N+ P ASRP+DK RDGFV+G+G+ +L
Sbjct: 195 GDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGFVLGDGAGML 253
Query: 121 VLEELDHALARSANIYAEIIGYGM 144
VLEE +HA R A IYAE++G+GM
Sbjct: 254 VLEEYEHAKKRGAKIYAELVGFGM 277
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 86/154 (55%), Gaps = 4/154 (2%)
Query: 205 IGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIG 264
GMS D +H+TSP E+G GA LAM AL DA + I Y+NAH TSTP GD E +A+
Sbjct: 275 FGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVK 334
Query: 265 SLF--PAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYE 322
++F A R++VSSTK +ES ++ILA+ + VPP +NL++P E
Sbjct: 335 TIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDF 394
Query: 323 CPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAE 356
P + G L NSFGFGGTN L +
Sbjct: 395 VPHEARQ--VSGMEYTLCNSFGFGGTNGSLIFKK 426
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 157 LQGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
+ G K+SP+FV + NM AG ++I +G +GP+ ++TAC +G H IG
Sbjct: 137 MNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIG 186
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 152/353 (43%), Gaps = 71/353 (20%)
Query: 10 LSPYFVNPFFPNMVPAG-AISIDMDSKVQTLCVYCLCYGGHAIGDAFRLIQGGHADVMIA 68
LS + + P+++PA A ++ + V + C G ++G+A R I+ G ADVM A
Sbjct: 135 LSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTS-GLDSVGNAVRAIEEGSADVMFA 193
Query: 69 GAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHA 128
GAA++ I+ + +A F +RA T N++P ASRPFD RDGFV+ EG+A+ VLE+ D A
Sbjct: 194 GAADTPITPIVVACFDAIRA-TTARNDDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSA 252
Query: 129 LARSANIYAEIIGYGMIDLSDVLSSNNALQGSYNKLSPYFVTRILPNMSAGQISIEHGFQ 188
LAR A I+AEI GY + + Y +T
Sbjct: 253 LARGARIHAEISGYA------------------TRCNAYHMT------------------ 276
Query: 189 GPNHCVSTACATGAHAIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAH 248
G+ DG RE +A+ + DA DI YINAH
Sbjct: 277 -----------------GLKADG------REMAETIRVALDESRTDAT----DIDYINAH 309
Query: 249 ATSTPLGDVIELKAIGSLF--PAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVP 306
+ T D E A A+R VSS K +LE A +LA+ G+VP
Sbjct: 310 GSGTRQNDRHETAAYKRALGEHARRTPVSSIKSMVGHSLGAIGSLEIAACVLALEHGVVP 369
Query: 307 PNVNLEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYKS 359
P NL E P E K R L GFGG + + + + ++
Sbjct: 370 PTANLRTSDPECDLDYVPLEARERKL---RSVLTVGSGFGGFQSAMVLRDAET 419
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 89/144 (61%), Gaps = 3/144 (2%)
Query: 2 LYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQG 60
L G +SP+FV NMV AG ++I + ++ + G H IG A R+I
Sbjct: 136 LMNGGPRKISPFFVPSTIVNMV-AGHLTIMYGLRGPSISIATAATSGVHNIGHAARIIAY 194
Query: 61 GHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAIL 120
G ADVM+AG AE + L + F RAL+T+ N+ P ASRP+DK RDGFV+G+G+ +L
Sbjct: 195 GDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGFVLGDGAGML 253
Query: 121 VLEELDHALARSANIYAEIIGYGM 144
VLEE +HA R A IYAE++G+GM
Sbjct: 254 VLEEYEHAKKRGAKIYAELVGFGM 277
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 86/154 (55%), Gaps = 4/154 (2%)
Query: 205 IGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIG 264
GMS D +H+TSP E+G GA LAM AL DA + I Y+NAH TSTP GD E +A+
Sbjct: 275 FGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVK 334
Query: 265 SLF--PAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYE 322
++F A R++VSSTK +ES ++ILA+ + VPP +NL++P E
Sbjct: 335 TIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDF 394
Query: 323 CPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAE 356
P + G L NSFGFGGTN L +
Sbjct: 395 VPHEARQ--VSGMEYTLCNSFGFGGTNGSLIFKK 426
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 157 LQGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
+ G K+SP+FV + NM AG ++I +G +GP+ ++TA +G H IG
Sbjct: 137 MNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIG 186
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 89/144 (61%), Gaps = 3/144 (2%)
Query: 2 LYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQG 60
L G +SP+FV NMV AG ++I + ++ + G H IG A R+I
Sbjct: 136 LMNGGPRKISPFFVPSTIVNMV-AGHLTIMYGLRGPSISIATAQTSGVHNIGHAARIIAY 194
Query: 61 GHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAIL 120
G ADVM+AG AE + L + F RAL+T+ N+ P ASRP+DK RDGFV+G+G+ +L
Sbjct: 195 GDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGFVLGDGAGML 253
Query: 121 VLEELDHALARSANIYAEIIGYGM 144
VLEE +HA R A IYAE++G+GM
Sbjct: 254 VLEEYEHAKKRGAKIYAELVGFGM 277
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 86/154 (55%), Gaps = 4/154 (2%)
Query: 205 IGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIG 264
GMS D +H+TSP E+G GA LAM AL DA + I Y+NAH TSTP GD E +A+
Sbjct: 275 FGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVK 334
Query: 265 SLF--PAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYE 322
++F A R++VSSTK +ES ++ILA+ + VPP +NL++P E
Sbjct: 335 TIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDF 394
Query: 323 CPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAE 356
P + G L NSFGFGGTN L +
Sbjct: 395 VPHEARQ--VSGMEYTLCNSFGFGGTNGSLIFKK 426
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 157 LQGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
+ G K+SP+FV + NM AG ++I +G +GP+ ++TA +G H IG
Sbjct: 137 MNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNIG 186
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 88/134 (65%), Gaps = 7/134 (5%)
Query: 15 VNPFF-PNMVP---AGAISIDMDSK-VQTLCVYCLCYGGHAIGDAFRLIQGGHADVMIAG 69
V+PFF P +P +G +SI +K + + V ++IGDAF++I+ G AD I G
Sbjct: 130 VSPFFVPXXIPDXGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVIERGDADAXITG 189
Query: 70 AAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHAL 129
AE+ I++ S+A F +AL+ N +P A RPFDK RDGF++GEG+ I++LEE +HA
Sbjct: 190 GAEAPITKXSLAGFTANKALS--LNPDPETACRPFDKDRDGFIIGEGAGIVILEEYEHAK 247
Query: 130 ARSANIYAEIIGYG 143
AR A IYAEI+GYG
Sbjct: 248 ARGAKIYAEIVGYG 261
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 82/150 (54%), Gaps = 5/150 (3%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
G +GD +H+T+P +G GA A A+ DA L+P + YINAH TSTP D E +AI +
Sbjct: 261 GATGDAYHITAPAPNGEGAARAXKXAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAIKT 320
Query: 266 LF--PAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYEC 323
+F A++L +SSTK +E+ F +L + + ++ P ++L++ E
Sbjct: 321 VFGEHAKKLAISSTKSXTGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYV 380
Query: 324 PTAVTEWKTDGRRVALKNSFGFGGTNACLC 353
P E + V + NSFGFGG NA L
Sbjct: 381 PNEAREANVN---VVISNSFGFGGHNATLV 407
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 157 LQGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
L + ++SP+FV +P+ +GQ+SI G +G N TACAT ++IG
Sbjct: 123 LNRGHRRVSPFFVPXXIPDXGSGQVSIRFGAKGINSTTVTACATATNSIG 172
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 83/143 (58%), Gaps = 4/143 (2%)
Query: 2 LYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGGH-AIGDAFRLIQG 60
L+ + P + PNM +G +++ + + C + AIGDAFR I+
Sbjct: 141 LHEKGPKRVKPMTLPKALPNMA-SGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKF 199
Query: 61 GHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAIL 120
G DVM+ G E+ I+ +IA F + AL+T +P +AS PFDK R+GFVMGEGS +L
Sbjct: 200 GFQDVMLVGGTEASITPFAIAGFQALTALST--TEDPTRASIPFDKDRNGFVMGEGSGML 257
Query: 121 VLEELDHALARSANIYAEIIGYG 143
VLE L+HA R A I AE++GYG
Sbjct: 258 VLESLEHAEKRGATILAEVVGYG 280
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
G + D +H+TSP +G+GA+ A+ AL +A +SP ++Y+NAH TSTP + E AI +
Sbjct: 280 GNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVA 339
Query: 266 LFPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGY-ECP 324
+ + + VSSTK +E+ TI A+ VP + E Y E
Sbjct: 340 VL-GKEVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVP----MTAGTSEVSDYIEAN 394
Query: 325 TAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYKS 359
+ A+ N+FGFGG NA L +++
Sbjct: 395 VVYGQGLEKEIPYAISNTFGFGGHNAVLAFKRWEN 429
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 162 NKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
++ P + + LPNM++G +++ G G ++TAC++ AIG
Sbjct: 147 KRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIG 191
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 83/143 (58%), Gaps = 4/143 (2%)
Query: 2 LYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGGH-AIGDAFRLIQG 60
L+ + P + PNM +G +++ + + C + AIGDAFR I+
Sbjct: 142 LHEKGPKRVKPMTLPKALPNMA-SGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKF 200
Query: 61 GHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAIL 120
G DVM+ G E+ I+ +IA F + AL+T +P +AS PFDK R+GFVMGEGS +L
Sbjct: 201 GFQDVMLVGGTEASITPFAIAGFQALTALST--TEDPTRASIPFDKDRNGFVMGEGSGML 258
Query: 121 VLEELDHALARSANIYAEIIGYG 143
VLE L+HA R A I AE++GYG
Sbjct: 259 VLESLEHAEKRGATILAEVVGYG 281
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
G + D +H+TSP +G+GA+ A+ AL +A +SP ++Y+NA TSTP + E AI +
Sbjct: 281 GNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAAGTSTPANEKGESGAIVA 340
Query: 266 LFPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGY-ECP 324
+ + + VSSTK +E+ TI A+ VP + E Y E
Sbjct: 341 VL-GKEVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVP----MTAGTSEVSDYIEAN 395
Query: 325 TAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYKS 359
+ A+ N+FGFGG NA L +++
Sbjct: 396 VVYAQGLEKEIPYAISNTFGFGGHNAVLAFKRWEN 430
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 162 NKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
++ P + + LPNM++G +++ G G ++TAC++ AIG
Sbjct: 148 KRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIG 192
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 83/143 (58%), Gaps = 4/143 (2%)
Query: 2 LYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGGH-AIGDAFRLIQG 60
L+ + P + PNM +G +++ + + C + AIGDAFR I+
Sbjct: 141 LHEKGPKRVKPMTLPKALPNMA-SGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKF 199
Query: 61 GHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAIL 120
G DVM+ G E+ I+ +IA F + AL+T +P +AS PFDK R+GFVMGEGS +L
Sbjct: 200 GFQDVMLVGGTEASITPFAIAGFQALTALST--TEDPTRASIPFDKDRNGFVMGEGSGML 257
Query: 121 VLEELDHALARSANIYAEIIGYG 143
VLE L+HA R A I AE++GYG
Sbjct: 258 VLESLEHAEKRGATILAEVVGYG 280
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 6/153 (3%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
G + D +H+TSP +G+GA+ A+ AL +A +SP ++Y+NAH TSTP + E AI +
Sbjct: 280 GNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVA 339
Query: 266 LFPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGY-ECP 324
+ + + VSSTK +E+ TI A+ VP + E Y E
Sbjct: 340 VL-GKAVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVP----MTAGTSEVSDYIEAN 394
Query: 325 TAVTEWKTDGRRVALKNSFGFGGTNACLCIAEY 357
+ A+ N+FGFGG NA L +
Sbjct: 395 VVYGQGLAKEIPYAISNTFGFGGHNAVLAFKRW 427
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 162 NKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
++ P + + LPNM++G +++ G G ++TAC++ AIG
Sbjct: 147 KRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIG 191
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 1 MLYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQ 59
++ G +SP V PN A I + + ++ + C G AI A+R I
Sbjct: 128 LMNAGGPRKVSPLAVQMIMPNGA-AAVIGLQLGARAGVMTPVSACSSGSEAIAHAWRQIV 186
Query: 60 GGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAI 119
G ADV + G E I L IAAF +RA++T+ N+EP +ASRPFDK RDGFV GE A+
Sbjct: 187 MGDADVAVCGGVEGPIEALPIAAFSMMRAMSTR-NDEPERASRPFDKDRDGFVFGEAGAL 245
Query: 120 LVLEELDHALARSANIYAEIIGYGM 144
+++E +HA AR A A ++G G+
Sbjct: 246 MLIETEEHAKARGAKPLARLLGAGI 270
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 77/152 (50%), Gaps = 4/152 (2%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
G++ D H+ +P DG A AMTR+L A LSP DI ++NAH T+TP+GD E AI
Sbjct: 269 GITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAI-R 327
Query: 266 LFPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYECPT 325
+ + V + K LES T+L + +G++PP +N E P E +
Sbjct: 328 VAGCDQAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPE---IDLDV 384
Query: 326 AVTEWKTDGRRVALKNSFGFGGTNACLCIAEY 357
E + R A+ NSFGFGG N L Y
Sbjct: 385 VAGEPRYGDYRYAVNNSFGFGGHNVALAFGRY 416
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 136 YAEIIGYGMIDLSDVLSSNNALQ-GSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCV 194
+A ++G G+ ++ S + + G K+SP V I+PN +A I ++ G +
Sbjct: 108 FAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTP 167
Query: 195 STACATGAHAI 205
+AC++G+ AI
Sbjct: 168 VSACSSGSEAI 178
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 80/142 (56%), Gaps = 3/142 (2%)
Query: 1 MLYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLC-YGGHAIGDAFRLIQ 59
M RG +SP V + PN A A+ ++ +K + C G AI A++ I
Sbjct: 145 MRARG-MKAVSPLTVQKYMPNGA-AAAVGLERHAKAGVMTPVSACASGAEAIARAWQQIV 202
Query: 60 GGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAI 119
G AD I G E+ I + IA F ++R + + N++PA A RPFD+ RDGFV GEG A+
Sbjct: 203 LGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGEGGAL 262
Query: 120 LVLEELDHALARSANIYAEIIG 141
L++E +HA AR ANI A I+G
Sbjct: 263 LLIETEEHAKARGANILARIMG 284
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 3/151 (1%)
Query: 207 MSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGSL 266
++ DG H+ +P +G A A+TRA+ A L+PGDI ++NAHAT T +GD+ E +AI +
Sbjct: 287 ITSDGFHMVAPDPNGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNA 346
Query: 267 FPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYECPTA 326
R V + K +ES T+LA+ + ++PP +NL + E +
Sbjct: 347 LGGNRPAVYAPKSALGHSVGAVGAVESILTVLALRDQVIPPTLNLVNLDPE---IDLDVV 403
Query: 327 VTEWKTDGRRVALKNSFGFGGTNACLCIAEY 357
E + R A+ NSFGFGG N + Y
Sbjct: 404 AGEPRPGNYRYAINNSFGFGGHNVAIAFGRY 434
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 140 IGYGMIDLSDVLSSNNALQGSYNK-LSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTAC 198
IG G+ +++ S + ++ K +SP V + +PN +A + +E + +AC
Sbjct: 128 IGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVSAC 187
Query: 199 ATGAHAI 205
A+GA AI
Sbjct: 188 ASGAEAI 194
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 1 MLYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLC-VYCLCYGGHAIGDAFRLIQ 59
++ G +SP V PN A I + + ++ + V G AI A+R I
Sbjct: 128 LMNAGGPRKVSPLAVQMIMPNGA-AAVIGLQLGARAGVMTPVSAQSSGSEAIAHAWRQIV 186
Query: 60 GGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAI 119
G ADV + G E I L IAAF +RA++T+ N+EP +ASRPFDK RDGFV GE A+
Sbjct: 187 MGDADVAVCGGVEGPIEALPIAAFSMMRAMSTR-NDEPERASRPFDKDRDGFVFGEAGAL 245
Query: 120 LVLEELDHALARSANIYAEIIGYGM 144
+++E +HA AR A A ++G G+
Sbjct: 246 MLIETEEHAKARGAKPLARLLGAGI 270
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 77/152 (50%), Gaps = 4/152 (2%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
G++ D H+ +P DG A AMTR+L A LSP DI ++NAH T+TP+GD E AI
Sbjct: 269 GITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAI-R 327
Query: 266 LFPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYECPT 325
+ + V + K LES T+L + +G++PP +N E P E +
Sbjct: 328 VAGCDQAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPE---IDLDV 384
Query: 326 AVTEWKTDGRRVALKNSFGFGGTNACLCIAEY 357
E + R A+ NSFGFGG N L Y
Sbjct: 385 VAGEPRYGDYRYAVNNSFGFGGHNVALAFGRY 416
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 136 YAEIIGYGMIDLSDVLSSNNALQ-GSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCV 194
+A ++G G+ ++ S + + G K+SP V I+PN +A I ++ G +
Sbjct: 108 FAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTP 167
Query: 195 STACATGAHAI 205
+A ++G+ AI
Sbjct: 168 VSAQSSGSEAI 178
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 49 HAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRR 108
H IG+A+ +IQ G D M AG E LS+ F + A+++++N+ P+ ASR +DK R
Sbjct: 187 HCIGNAYEMIQYGKQDRMFAGGCEDLDWTLSVL-FDAMGAMSSKYNDTPSTASRAYDKNR 245
Query: 109 DGFVMGEGSAILVLEELDHALARSANIYAEIIGYG 143
DGFV+ G+ +LVLE+L+ ALAR A IY EI+GYG
Sbjct: 246 DGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYG 280
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 79/180 (43%), Gaps = 29/180 (16%)
Query: 194 VSTACATGAH------AIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINA 247
+ TA A GA G + DG+ + +P G GA+ M AL + I YIN
Sbjct: 262 LETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMAL---STVTSKIDYINP 316
Query: 248 HATSTPLGDVIELKAIGSLFPAQRLM--VSSTKXXXXXXXXXXXNLESAFTILAVHEGLV 305
HATSTP GD E++AI +F A + +++TK E+ +++L + +
Sbjct: 317 HATSTPAGDAPEIEAIRQIFGAGDVCPPIAATKSLTGHSLGATGVQEAIYSLLMMQNNFI 376
Query: 306 PPNVNLEDPCEEAGGYECPTAVTEWKTDGRRV-------ALKNSFGFGGTNACLCIAEYK 358
CE A E A + +R+ L NSFGFGGTNA L Y+
Sbjct: 377 ---------CESAHIEELDPAFADMPIVRKRIDNVQLNTVLSNSFGFGGTNATLVFQRYQ 427
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 162 NKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
++ P+ V + + + ++ ++ +G N+ +S+ACAT H IG
Sbjct: 146 KRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIG 190
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 49 HAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRR 108
H IG+A+ +IQ G D M AG E LS+ F + A+++++N+ P+ ASR +DK R
Sbjct: 170 HCIGNAYEMIQYGKQDRMFAGGCEDLDWTLSVL-FDAMGAMSSKYNDTPSTASRAYDKNR 228
Query: 109 DGFVMGEGSAILVLEELDHALARSANIYAEIIGYG 143
DGFV+ G+ +LVLE+L+ ALAR A IY EI+GYG
Sbjct: 229 DGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYG 263
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 79/180 (43%), Gaps = 29/180 (16%)
Query: 194 VSTACATGAH------AIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINA 247
+ TA A GA G + DG+ + +P G GA+ M AL + I YIN
Sbjct: 245 LETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMAL---STVTSKIDYINP 299
Query: 248 HATSTPLGDVIELKAIGSLFPAQRLM--VSSTKXXXXXXXXXXXNLESAFTILAVHEGLV 305
HATSTP GD E++AI +F A + +++TK E+ +++L + +
Sbjct: 300 HATSTPAGDAPEIEAIRQIFGAGDVCPPIAATKSLTGHSLGATGVQEAIYSLLMMQNNFI 359
Query: 306 PPNVNLEDPCEEAGGYECPTAVTEWKTDGRRV-------ALKNSFGFGGTNACLCIAEYK 358
CE A E A + +R+ L NSFGFGGTNA L Y+
Sbjct: 360 ---------CESAHIEELDPAFADMPIVRKRIDNVQLNTVLSNSFGFGGTNATLVFQRYQ 410
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 162 NKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
++ P+ V + + + ++ ++ +G N+ +S+ACAT H IG
Sbjct: 129 KRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIG 173
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 49 HAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRR 108
H IG+A IQ G D++ AG E +++ F + AL+T++N+ P +ASR +D R
Sbjct: 168 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMA-CEFDAMGALSTKYNDTPEKASRTYDAHR 226
Query: 109 DGFVMGEGSAILVLEELDHALARSANIYAEIIGYG 143
DGFV+ G ++V+EEL+HALAR A+IYAEI+GYG
Sbjct: 227 DGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYG 261
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 197 ACATGAH------AIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
A A GAH G + DG + +P G GA+ M A+ + +P I Y+N+H T
Sbjct: 246 ALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMHGVD-TP--IDYLNSHGT 300
Query: 251 STPLGDVIELKAIGSLFPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVN 310
STP+GDV EL AI +F + +S+TK E+ +++L + G + P++N
Sbjct: 301 STPVGDVKELAAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSIN 360
Query: 311 LEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYK 358
+E+ E+A G T T+ + + NSFGFGGTNA L + + K
Sbjct: 361 IEELDEQAAGLNIVTETTDREL---TTVMSNSFGFGGTNATLVMRKLK 405
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 49 HAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRR 108
H IG+A IQ G D++ AG E +++ F + AL+T++N+ P +ASR +D R
Sbjct: 180 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMA-CEFDAMGALSTKYNDTPEKASRTYDAHR 238
Query: 109 DGFVMGEGSAILVLEELDHALARSANIYAEIIGYG 143
DGFV+ G ++V+EEL+HALAR A+IYAEI+GYG
Sbjct: 239 DGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYG 273
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 197 ACATGAH------AIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
A A GAH G + DG + +P G GA+ M A+ + +P I Y+N+H T
Sbjct: 258 ALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMHGVD-TP--IDYLNSHGT 312
Query: 251 STPLGDVIELKAIGSLFPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVN 310
STP+GDV EL AI +F + +S+T E+ +++L + G + P++N
Sbjct: 313 STPVGDVKELAAIREVFGDKSPAISATAAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSIN 372
Query: 311 LEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYK 358
+E+ E+A G T T+ + + NSFGFGGTNA L + + K
Sbjct: 373 IEELDEQAAGLNIVTETTDREL---TTVMSNSFGFGGTNATLVMRKLK 417
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 164 LSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
+ PY VT+ + + + ++ G N+ +S+ACAT AH IG
Sbjct: 141 VGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIG 183
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 49 HAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRR 108
H IG+A IQ G D++ AG E +++ F + AL+T++N+ P +ASR +D R
Sbjct: 168 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMA-CEFDAMGALSTKYNDTPEKASRTYDAHR 226
Query: 109 DGFVMGEGSAILVLEELDHALARSANIYAEIIGYG 143
DGFV+ G ++V+EEL+HALAR A+IYAEI+GYG
Sbjct: 227 DGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYG 261
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 197 ACATGAH------AIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
A A GAH G + DG + +P G GA+ M A+ + +P I Y+N+H T
Sbjct: 246 ALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMHGVD-TP--IDYLNSHGT 300
Query: 251 STPLGDVIELKAIGSLFPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVN 310
STP+GDV EL AI +F + +S+TK E+ +++L + G + P++N
Sbjct: 301 STPVGDVKELAAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSIN 360
Query: 311 LEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYK 358
+E+ E+A G T T+ + + NSFGFGGTNA L + + K
Sbjct: 361 IEELDEQAAGLNIVTETTDREL---TTVMSNSFGFGGTNATLVMRKLK 405
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 164 LSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
+ PY VT+ + + + ++ G N+ +S+ACAT AH IG
Sbjct: 129 VGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIG 171
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 49 HAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRR 108
H IG+A IQ G D++ AG E +++ F + AL+T++N+ P +ASR +D R
Sbjct: 168 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMA-CEFDAMGALSTKYNDTPEKASRTYDAHR 226
Query: 109 DGFVMGEGSAILVLEELDHALARSANIYAEIIGYG 143
DGFV+ G ++V+EEL+HALAR A+IYAEI+GYG
Sbjct: 227 DGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYG 261
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 197 ACATGAH------AIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
A A GAH G + DG + +P G GA+ M A+ + +P I Y+N+H T
Sbjct: 246 ALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMHGVD-TP--IDYLNSHGT 300
Query: 251 STPLGDVIELKAIGSLFPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVN 310
STP+GDV EL AI +F + +S+TK E+ +++L + G + P++N
Sbjct: 301 STPVGDVKELAAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSIN 360
Query: 311 LEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYK 358
+E+ E+A G T T+ + + NSFGFGGTNA L + + K
Sbjct: 361 IEELDEQAAGLNIVTETTDREL---TTVMSNSFGFGGTNATLVMRKLK 405
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 164 LSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
+ PY VT+ + + + ++ G N+ +S+ACAT AH IG
Sbjct: 129 VGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIG 171
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 49 HAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRR 108
H IG+A IQ G D++ AG E +++ F + AL+T++N+ P +ASR +D R
Sbjct: 180 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMA-CEFDAMGALSTKYNDTPEKASRTYDAHR 238
Query: 109 DGFVMGEGSAILVLEELDHALARSANIYAEIIGYG 143
DGFV+ G ++V+EEL+HALAR A+IYAEI+GYG
Sbjct: 239 DGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYG 273
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 197 ACATGAH------AIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
A A GAH G + DG + +P G GA+ M A+ + +P I Y+N+ T
Sbjct: 258 ALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMHGVD-TP--IDYLNSEGT 312
Query: 251 STPLGDVIELKAIGSLFPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVN 310
STP+GDV EL AI +F + +S+TK E+ +++L + G + P++N
Sbjct: 313 STPVGDVKELAAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSIN 372
Query: 311 LEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYK 358
+E+ E+A G T T+ + + NSFGFGGTNA L + + K
Sbjct: 373 IEELDEQAAGLNIVTETTDREL---TTVMSNSFGFGGTNATLVMRKLK 417
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 164 LSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
+ PY VT+ + + + ++ G N+ +S+ACAT AH IG
Sbjct: 141 VGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIG 183
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 49 HAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRR 108
H IG+A IQ G D++ AG E +++ F + AL+T++N+ P +ASR +D R
Sbjct: 180 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMA-CEFDAMGALSTKYNDTPEKASRTYDAHR 238
Query: 109 DGFVMGEGSAILVLEELDHALARSANIYAEIIGYG 143
DGFV+ G ++V+EEL+HALAR A+IYAEI+GYG
Sbjct: 239 DGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYG 273
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 197 ACATGAH------AIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
A A GAH G + DG + +P G GA+ M A+ + +P I Y+N+ T
Sbjct: 258 ALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMHGVD-TP--IDYLNSQGT 312
Query: 251 STPLGDVIELKAIGSLFPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVN 310
STP+GDV EL AI +F + +S+TK E+ +++L + G + P++N
Sbjct: 313 STPVGDVKELAAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSIN 372
Query: 311 LEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYK 358
+E+ E+A G T T+ + + NSFGFGGTNA L + + K
Sbjct: 373 IEELDEQAAGLNIVTETTDREL---TTVMSNSFGFGGTNATLVMRKLK 417
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 164 LSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
+ PY VT+ + + + ++ G N+ +S+ACAT AH IG
Sbjct: 141 VGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIG 183
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 49 HAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRR 108
H IG+A IQ G D++ AG E +++ F + AL+T++N+ P +ASR +D R
Sbjct: 180 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMA-CEFDAMGALSTKYNDTPEKASRTYDAHR 238
Query: 109 DGFVMGEGSAILVLEELDHALARSANIYAEIIGYG 143
DGFV+ G ++V+EEL+HALAR A+IYAEI+GYG
Sbjct: 239 DGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYG 273
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 197 ACATGAH------AIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
A A GAH G + DG + +P G GA+ M A+ + +P I Y+N+H T
Sbjct: 258 ALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMHGVD-TP--IDYLNSHGT 312
Query: 251 STPLGDVIELKAIGSLFPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVN 310
STP+GDV EL AI +F + +S+TK E+ +++L + G + P++N
Sbjct: 313 STPVGDVKELAAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSIN 372
Query: 311 LEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYK 358
+E+ E+A G T T+ + + NSFGFGGTNA L + + K
Sbjct: 373 IEELDEQAAGLNIVTETTDREL---TTVMSNSFGFGGTNATLVMRKLK 417
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 49 HAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRR 108
H IG+A IQ G D++ AG E +++ F + AL+T++N+ P +ASR +D R
Sbjct: 168 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMA-CEFDAMGALSTKYNDTPEKASRTYDAHR 226
Query: 109 DGFVMGEGSAILVLEELDHALARSANIYAEIIGYG 143
DGFV+ G ++V+EEL+HALAR A+IYAEI+GYG
Sbjct: 227 DGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYG 261
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 197 ACATGAH------AIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
A A GAH G + DG + +P G GA+ M A+ + +P I Y+N+H T
Sbjct: 246 ALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMHGVD-TP--IDYLNSHGT 300
Query: 251 STPLGDVIELKAIGSLFPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVN 310
STP+GDV EL AI +F + +S+T+ E+ +++L + G + P++N
Sbjct: 301 STPVGDVKELAAIREVFGDKSPAISATRAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSIN 360
Query: 311 LEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYK 358
+E+ E+A G T T+ + + NSFGFGGTNA L + + K
Sbjct: 361 IEELDEQAAGLNIVTETTDREL---TTVMSNSFGFGGTNATLVMRKLK 405
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 164 LSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
+ PY VT+ + + + ++ G N+ +S+ACAT AH IG
Sbjct: 129 VGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIG 171
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 49 HAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRR 108
H IG+A IQ G D++ AG E +++ F + AL+T++N+ P +ASR +D R
Sbjct: 168 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMA-CEFDAMGALSTKYNDTPEKASRTYDAHR 226
Query: 109 DGFVMGEGSAILVLEELDHALARSANIYAEIIGYG 143
DGFV+ G ++V+EEL+HALAR A+IYAEI+GYG
Sbjct: 227 DGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYG 261
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 197 ACATGAH------AIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
A A GAH G + DG + +P G GA+ M A+ + +P I Y+N+H T
Sbjct: 246 ALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMHGVD-TP--IDYLNSHGT 300
Query: 251 STPLGDVIELKAIGSLFPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVN 310
STP+GDV EL AI +F + +S+TK E+ +++L + G + P++N
Sbjct: 301 STPVGDVKELAAIREVFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSIN 360
Query: 311 LEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYK 358
+E+ E+A G T T+ + + NSFGFGGTNA L + + K
Sbjct: 361 IEELDEQAAGLNIVTETTDREL---TTVMSNSFGFGGTNATLVMRKLK 405
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 1 MLYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLC-YGGHAIGDAFRLIQ 59
ML G+ T ++ P+ A +S+ D K + + C G AIG A+ I
Sbjct: 125 MLESGSMTDVTSNSYVQMMPHTT-AVNVSLFWDLKGRIVPTSSACASGSQAIGYAYENIA 183
Query: 60 GGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAI 119
G +M+AG AE +S ++A F + A +T+ N+EP RPFD +RDG V+GEG+A
Sbjct: 184 MGKQTLMLAGGAEE-LSGPAVAVFDTLYATSTR-NDEPHLTPRPFDAKRDGLVVGEGAAT 241
Query: 120 LVLEELDHALARSANIYAEIIGYG 143
LVLEE +HA AR A I+AEI+G+G
Sbjct: 242 LVLEEYEHAKARGATIHAEIVGFG 265
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 66/160 (41%), Gaps = 17/160 (10%)
Query: 205 IGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIG 264
G + DG H+T P AM AL DA L I+Y+NAH TST GDV E +A
Sbjct: 264 FGCNSDGAHMTQPTASTMA--RAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQATA 321
Query: 265 SLFPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLED------PCEEA 318
F +R+ +SS K LE+ +TI + P +NL + P +
Sbjct: 322 RTF-GERMPISSLKSYVGHTLGACGALEAWWTIEMMKRNWYAPTLNLTEVDPACAPLDYI 380
Query: 319 GGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYK 358
G E + + N+F FGG N L +
Sbjct: 381 RG--------EARAIDAEYVMSNNFAFGGINTSLIFRRVR 412
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 49 HAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRR 108
H IG A LIQ G D++ AG E + + F AL+T++N+ PA+ASR +D+ R
Sbjct: 172 HCIGHALELIQLGKQDIVFAGGGEELCWEXA-CEFDAXGALSTKYNDTPAKASRTYDQDR 230
Query: 109 DGFVMGEGSAILVLEELDHALARSANIYAEIIGYG 143
DGFV+ G +V+EEL+HALAR A+IYAEI+GYG
Sbjct: 231 DGFVIAGGGGXVVVEELEHALARGAHIYAEIVGYG 265
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 80/168 (47%), Gaps = 14/168 (8%)
Query: 197 ACATGAH------AIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
A A GAH G + DG +P +G A +D +P I Y N H T
Sbjct: 250 ALARGAHIYAEIVGYGATSDGADXVAPSGEGAVRCXQXAXAGVD---TP--IDYXNVHGT 304
Query: 251 STPLGDVIELKAIGSLFPAQRLMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVN 310
STP+GDV EL AI +F +SSTK E+ F++L V G + P++N
Sbjct: 305 STPVGDVKELGAIREVFGNNTPAISSTKAXTGHSLGAAGVHEAIFSLLXVEHGFIAPSIN 364
Query: 311 LEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYK 358
+++ E+A G T T+ + NSFGFGGTNA L +Y+
Sbjct: 365 IDNLDEQAQGXNIITETTQREL---TTVXSNSFGFGGTNATLVXRKYQ 409
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 148 SDVLSSNNALQGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
SD + L+G + PY VT+ + + ++ +G N+ +S+ACAT AH IG
Sbjct: 121 SDAXRTPRGLKG----VGPYXVTKAXASGVSACLATPFKIKGVNYSISSACATSAHCIG 175
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 12/161 (7%)
Query: 204 AIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAI 263
A+ G + LT+P G + RAL +A + GD+ Y+ AH T T LGD IE+ A+
Sbjct: 292 AVNQDGASNGLTAP--SGPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVHAL 349
Query: 264 GSLFPAQR-----LMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEEA 318
S + A+R L + S K +LA+ G P ++ ++P +
Sbjct: 350 LSTYGAERDPDDPLWIGSVKSNIGHTQAAAGVAGVXKAVLALRHGEXPRTLHFDEPSPQI 409
Query: 319 ----GGYECPTAVTEWKTDGR-RVALKNSFGFGGTNACLCI 354
G + W R R A +SFG GTNA + +
Sbjct: 410 EWDLGAVSVVSQARSWPAGERPRRAGVSSFGISGTNAHVIV 450
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 91 TQFNNEPAQAS----RPFDKRRDGFVMGEGSAILVLEELDHALARSANIYAEIIG 141
T+F ++ A+ +PF K DGF + EG+ +LVL+ L A + A + G
Sbjct: 236 TEFRSQGGLAADGRCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLRG 290
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 12/163 (7%)
Query: 204 AIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAI 263
A+ G + L++P G + +AL L PGD+ + AH T T LGD IE A+
Sbjct: 270 ALNQDGASNGLSAP--SGPAQRRVIRQALESCGLEPGDVDAVEAHGTGTALGDPIEANAL 327
Query: 264 GSLFPAQR-----LMVSSTKXXXXXXXXXXXNLESAFTILAVHEGLVPPNVNLEDPCEE- 317
+ R L + S K +LA+ G +P +++E+P
Sbjct: 328 LDTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATLHVEEPTPHV 387
Query: 318 ---AGGYECPTAVTEWKTDGR-RVALKNSFGFGGTNACLCIAE 356
+GG W+ R R A ++FG GTNA + + E
Sbjct: 388 DWSSGGVALLAGNQPWRRGERTRRAAVSAFGISGTNAHVIVEE 430
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 167 YFVTRILPNMSAGQISIEHGFQGPNHCVSTACAT 200
Y VT + P +++G+IS G +GP+ V TAC++
Sbjct: 146 YSVTGVAPAVASGRISYTMGLEGPSISVDTACSS 179
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Query: 23 VPAGAISIDMDSKVQTLCVYCLCYGGH-AIGDAFRLIQGGHADVMIAGAAESCISQLSIA 81
V +G IS M + ++ V C A+ A ++ G + + + G A +
Sbjct: 155 VASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFV 214
Query: 82 AFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHALARSANIYAEIIG 141
F R RALA S+ F DGF EG +++LE L A + A + G
Sbjct: 215 DFSRQRALAADGR------SKAFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVVRG 268
Query: 142 YGM 144
+
Sbjct: 269 SAL 271
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 23 VPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQGGHADVMIAGAAESCISQLSIA 81
V G ISI + + + GG A+G A R I+ G ++++G +S +
Sbjct: 147 VNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRGTP-LVVSGGVDSALDPWGWV 205
Query: 82 AFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHALARSA-NIYAEII 140
+ ++T +P +A PFD+R G+V GEG AILVLE+ A AR + Y E+
Sbjct: 206 SQIASGRISTA--TDPDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELA 263
Query: 141 G 141
G
Sbjct: 264 G 264
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 3/131 (2%)
Query: 227 AMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGSLFPAQRLMVSSTKXXXXXXXX 286
A+ AL DA P D+ + A P D E +AIG +F + + V+ K
Sbjct: 284 AIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFGREGVPVTVPKTTTGRLYS 343
Query: 287 XXXNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFG 346
L+ ++++ EG++ P + E Y + E ++ R AL + G
Sbjct: 344 GGGPLDVVTALMSLREGVIAPTAGVTSVPRE---YGIDLVLGEPRSTAPRTALVLARGRW 400
Query: 347 GTNACLCIAEY 357
G N+ + +
Sbjct: 401 GFNSAAVLRRF 411
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 176 MSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
++ GQISI HG +GP+ + A G A+G
Sbjct: 147 VNTGQISIRHGMRGPSSALVAEQAGGLDALG 177
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 7/126 (5%)
Query: 235 ANLSPGDISYINAHATSTPLGDVIELKAIGSLFPAQR---LMVSSTKXXXXXXXXXXXNL 291
A ++P YI AH T T +GD EL I A R L++ STK
Sbjct: 282 AGVAPESFEYIEAHGTGTKVGDPQELNGITRALCATRQEPLLIGSTKSNMGHPEPASGLA 341
Query: 292 ESAFTILAVHEGLVPPNVNLEDPCEEAGGY---ECPTAVTEWKTDGRRVALKNSFGFGGT 348
A +L++ GL PN++ P E G V + NSFGFGG+
Sbjct: 342 ALAKVLLSLEHGLWAPNLHFHSPNPEIPALLDGRLQVVDQPLPVRGGNVGI-NSFGFGGS 400
Query: 349 NACLCI 354
N + +
Sbjct: 401 NVHIIL 406
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 25/126 (19%)
Query: 239 PGDISYINAHATSTPLGDVIELKAIGSLFPAQR---LMVSSTKXXXXXXXXXXXNLESAF 295
P + YI AH T T +GD EL I + A R L++ STK
Sbjct: 284 PESLEYIEAHGTGTKVGDPQELNGIVNALCATRREPLLIGSTKSNMGHPEPASGVAALIK 343
Query: 296 TILAVHEGLVPPNVNLEDPCEEAGGYECPTAVTEWKTDGRRVALK------------NSF 343
+L++ G+ PN++ P E + DGR + NSF
Sbjct: 344 VLLSLEHGVWAPNLHYHTPNPEIPALQ----------DGRLQVVDRPLPIRGGNVGINSF 393
Query: 344 GFGGTN 349
GFGG+N
Sbjct: 394 GFGGSN 399
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 97 PAQASRPFDKRRDGFVMGEGSAILVLEELDHALARSANIY 136
PA+ SRP R+GF+ +G+ I ++ + D AL IY
Sbjct: 1163 PAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIY 1202
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 97 PAQASRPFDKRRDGFVMGEGSAILVLEELDHALARSANIY 136
PA+ SRP R+GF+ +G+ I ++ + D AL IY
Sbjct: 1362 PAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIY 1401
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 97 PAQASRPFDKRRDGFVMGEGSAILVLEELDHALARSANIY 136
PA+ SRP R+GF+ +G+ I ++ + D AL IY
Sbjct: 1362 PAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIY 1401
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 58 IQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQA--------SRPFDKRRD 109
I+ G AD++IAG L++ A +A + E +A SR D+RR
Sbjct: 2754 IKLGKADLVIAGG----FDDLTLEAIIGFGDMAATADTEMMRAKGISDSKFSRANDRRRL 2809
Query: 110 GFVMGEGSAILVLEELDHALARSANIYAEIIGY 142
GF+ +G ++L D AL + A ++GY
Sbjct: 2810 GFLEAQGGGTILLARGDLALKMGLPVLA-VVGY 2841
>pdb|1UUQ|A Chain A, Exo-mannosidase From Cellvibrio Mixtus
pdb|1UZ4|A Chain A, Common Inhibition Of Beta-Glucosidase And Beta-Mannosidase
By Isofagomine Lactam Reflects Different Conformational
Intineraries For Glucoside And Mannoside Hydrolysis
Length = 440
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 210 DGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAH 248
D HHL S +G + + IDA+ +P DI Y+ H
Sbjct: 246 DAHHLVSSGSEGEMGSVNDMQVFIDAHATP-DIDYLTYH 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,543,631
Number of Sequences: 62578
Number of extensions: 416356
Number of successful extensions: 1079
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 134
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)