RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5293
(359 letters)
>gnl|CDD|240245 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein synthase;
Provisional.
Length = 421
Score = 279 bits (715), Expect = 4e-91
Identities = 141/361 (39%), Positives = 186/361 (51%), Gaps = 68/361 (18%)
Query: 1 MLYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTL-CVYCLCYGGHAIGDAFRLIQ 59
LY + +SPYF+ NM AG ++I K + V G H IG+AFR I+
Sbjct: 125 TLYEKGHSRVSPYFIPKILGNM-AAGLVAIKHKLKGPSGSAVTACATGAHCIGEAFRWIK 183
Query: 60 GGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAI 119
G AD+MI G E+ I+ +S A F R+RAL T++N++P +ASRPFDK R GFVMGEG+ I
Sbjct: 184 YGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDRAGFVMGEGAGI 243
Query: 120 LVLEELDHALARSANIYAEIIGYGMIDLSDVLSSNNALQGSYNKLSPYFVTRILPNMSAG 179
LVLEEL+HAL R A IYAEI GYG SS++A + +T P+
Sbjct: 244 LVLEELEHALRRGAKIYAEIRGYG--------SSSDA----------HHITAPHPDGRGA 285
Query: 180 QISIEHGFQGPNHCVSTACATGAHAIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSP 239
+ +E +A+ + I+ N
Sbjct: 286 RRCME------------------NALKDGAN----------------------ININ--- 302
Query: 240 GDISYINAHATSTPLGDVIELKAIGSLF---PAQRLMVSSTKGAHGHLLGAAGNLESAFT 296
D+ Y+NAHATSTP+GD IELKAI +F A +L VSSTKG GHLLGAAG +ES T
Sbjct: 303 -DVDYVNAHATSTPIGDKIELKAIKKVFGDSGAPKLYVSSTKGGLGHLLGAAGAVESIVT 361
Query: 297 ILAVHEGLVPPNVNLEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAE 356
IL+++E ++PP +NLE+P E L SFGFGG N L +
Sbjct: 362 ILSLYEQIIPPTINLENPDAECDLNLVQGKTAHPLQ-SIDAVLSTSFGFGGVNTALLFTK 420
Query: 357 Y 357
Y
Sbjct: 421 Y 421
Score = 80.9 bits (200), Expect = 7e-17
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 139 IIGYGMIDLSDVLSSNNALQG-SYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTA 197
IG G+ L+D+ L ++++SPYF+ +IL NM+AG ++I+H +GP+ TA
Sbjct: 108 NIGSGIGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIKHKLKGPSGSAVTA 167
Query: 198 CATGAHAIG 206
CATGAH IG
Sbjct: 168 CATGAHCIG 176
>gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP)
synthase (KAS), type I and II. KASs are responsible for
the elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen
condensation of malonyl-acyl carrier protein (ACP) with
acyl-ACP.
Length = 406
Score = 206 bits (527), Expect = 3e-63
Identities = 82/166 (49%), Positives = 98/166 (59%), Gaps = 11/166 (6%)
Query: 197 ACATGAHAI------GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
A A GA G S D +H+T+P DG GA AM AL DA LSP DI YINAH T
Sbjct: 244 AKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADAGLSPEDIDYINAHGT 303
Query: 251 STPLGDVIELKAIGSLFP--AQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPN 308
STPL D E KAI +F A+++ VSSTK GHLLGAAG +E+ T+LA+ +G++PP
Sbjct: 304 STPLNDAAESKAIKRVFGEHAKKVPVSSTKSMTGHLLGAAGAVEAIATLLALRDGVLPPT 363
Query: 309 VNLEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCI 354
+NLE+P E P E R AL NSFGFGG NA L
Sbjct: 364 INLEEPDPECDLDYVPNEAREAPI---RYALSNSFGFGGHNASLVF 406
Score = 175 bits (446), Expect = 3e-51
Identities = 74/136 (54%), Positives = 97/136 (71%), Gaps = 3/136 (2%)
Query: 10 LSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCY-GGHAIGDAFRLIQGGHADVMIA 68
+SP+FV PNM AG ++I + + V C G HAIGDA RLI+ G ADV+IA
Sbjct: 127 VSPFFVPMALPNM-AAGQVAIRLGLRGPNYTVSTACASGAHAIGDAARLIRLGRADVVIA 185
Query: 69 GAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHA 128
G AE+ I+ L++A F +RAL+T+ N++P +ASRPFDK RDGFV+GEG+ +LVLE L+HA
Sbjct: 186 GGAEALITPLTLAGFAALRALSTR-NDDPEKASRPFDKDRDGFVLGEGAGVLVLESLEHA 244
Query: 129 LARSANIYAEIIGYGM 144
AR A IYAEI+GYG
Sbjct: 245 KARGAKIYAEILGYGA 260
Score = 79.5 bits (197), Expect = 2e-16
Identities = 34/70 (48%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 139 IIGYGMIDLSDVLSSNNAL-QGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTA 197
+IG G+ L+ + + AL + ++SP+FV LPNM+AGQ++I G +GPN+ VSTA
Sbjct: 101 VIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLRGPNYTVSTA 160
Query: 198 CATGAHAIGM 207
CA+GAHAIG
Sbjct: 161 CASGAHAIGD 170
>gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II.
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II,
FabF) is involved in the condensation step of fatty acid
biosynthesis in which the malonyl donor group is
decarboxylated and the resulting carbanion used to
attack and extend the acyl group attached to the acyl
carrier protein. Most genomes encoding fatty acid
biosynthesis contain a number of condensing enzymes,
often of all three types: 1, 2 and 3. Synthase 2 is
mechanistically related to synthase 1 (KAS-I, FabB)
containing a number of absolutely conserved catalytic
residues in common. This model is based primarily on
genes which are found in apparent operons with other
essential genes of fatty acid biosynthesis
(GenProp0681). The large gap between the trusted cutoff
and the noise cutoff contains many genes which are not
found adjacent to genes of the fatty acid pathway in
genomes that often also contain a better hit to this
model. These genes may be involved in other processes
such as polyketide biosyntheses. Some genomes contain
more than one above-trusted hit to this model which may
result from recent paralogous expansions. Second hits to
this model which are not next to other fatty acid
biosynthesis genes may be involved in other processes.
FabB sequences should fall well below the noise cutoff
of this model [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 407
Score = 201 bits (513), Expect = 4e-61
Identities = 80/150 (53%), Positives = 98/150 (65%), Gaps = 5/150 (3%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
GMSGD +H+T+P +G GA AM AL DA ++P D+ YINAH TSTPLGD E KAI
Sbjct: 259 GMSGDAYHITAPAPEGEGAARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKR 318
Query: 266 LF--PAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYEC 323
+F A +L VSSTK GHLLGAAG +E+ FT+LA+ +G+VPP +NL++P E
Sbjct: 319 VFGDHAYKLAVSSTKSMTGHLLGAAGAIEAIFTVLALRDGIVPPTINLDNPDPECDLDYV 378
Query: 324 PTAVTEWKTDGRRVALKNSFGFGGTNACLC 353
P E K D AL NSFGFGG NA L
Sbjct: 379 PNEAREAKID---YALSNSFGFGGHNASLV 405
Score = 186 bits (474), Expect = 2e-55
Identities = 82/136 (60%), Positives = 96/136 (70%), Gaps = 8/136 (5%)
Query: 15 VNPFF-----PNMVPAGAISIDMDSKVQTLCVYCLC-YGGHAIGDAFRLIQGGHADVMIA 68
V+PFF NM AG ISI +K V C G HAIGDAFRLIQ G ADVMIA
Sbjct: 127 VSPFFIPMSIINMA-AGQISIRYGAKGPNHAVVTACATGTHAIGDAFRLIQRGDADVMIA 185
Query: 69 GAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHA 128
G AE+ I+ L IA F ++AL+T N++P +ASRPFDK RDGFVMGEG+ +LVLEEL+HA
Sbjct: 186 GGAEAAITPLGIAGFAAMKALST-RNDDPEKASRPFDKDRDGFVMGEGAGVLVLEELEHA 244
Query: 129 LARSANIYAEIIGYGM 144
AR A IYAEI+GYGM
Sbjct: 245 KARGAKIYAEIVGYGM 260
Score = 82.9 bits (206), Expect = 1e-17
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 139 IIGYGMIDLSDVLSSNNAL-QGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTA 197
IIG G+ L + + L + ++SP+F+ + NM+AGQISI +G +GPNH V TA
Sbjct: 101 IIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYGAKGPNHAVVTA 160
Query: 198 CATGAHAIGMS 208
CATG HAIG +
Sbjct: 161 CATGTHAIGDA 171
>gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 414
Score = 192 bits (488), Expect = 1e-57
Identities = 126/347 (36%), Positives = 181/347 (52%), Gaps = 71/347 (20%)
Query: 10 LSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQGGHADVMIA 68
+SP+FV NM+ AG +SI + + + C G H IG A R+I G AD M+A
Sbjct: 130 VSPFFVPSTIVNMI-AGNLSIMRGLRGPNIAISTACTTGLHNIGHAARMIAYGDADAMVA 188
Query: 69 GAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHA 128
G AE + L +A F +AL+T+ N+EP +ASRP+DK RDGFV+G+G+ ++VLEE +HA
Sbjct: 189 GGAEKASTPLGMAGFGAAKALSTR-NDEPQKASRPWDKDRDGFVLGDGAGMMVLEEYEHA 247
Query: 129 LARSANIYAEIIGYGMIDLSDVLSSNNALQGSYNKLSPYFVTRILPNMSAGQISIEHGFQ 188
AR A IYAE++G+GM S +A Y +T + S G +++E
Sbjct: 248 KARGAKIYAELVGFGM--------SGDA----------YHMTSPSEDGSGGALAME---- 285
Query: 189 GPNHCVSTACATGAHAIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAH 248
A+ DA ++ I Y+NAH
Sbjct: 286 -----------------------------------------AAMRDAGVTGEQIGYVNAH 304
Query: 249 ATSTPLGDVIELKAIGSLF---PAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLV 305
TSTP GDV E+K I +++++VSSTK GHLLGAAG++E+ T++++ + +V
Sbjct: 305 GTSTPAGDVAEIKGIKRALGEAGSKQVLVSSTKSMTGHLLGAAGSVEAIITVMSLVDQIV 364
Query: 306 PPNVNLEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACL 352
PP +NL+DP E P T K + A+ NSFGFGGTN L
Sbjct: 365 PPTINLDDPEEGLDIDLVPH--TARKVESMEYAICNSFGFGGTNGSL 409
Score = 56.2 bits (135), Expect = 9e-09
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 140 IGYGMIDLSDVLSSNNAL-QGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTAC 198
IG G+ L + + + AL + K+SP+FV + NM AG +SI G +GPN +STAC
Sbjct: 105 IGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTAC 164
Query: 199 ATGAHAIG 206
TG H IG
Sbjct: 165 TTGLHNIG 172
>gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 411
Score = 191 bits (488), Expect = 2e-57
Identities = 78/155 (50%), Positives = 100/155 (64%), Gaps = 5/155 (3%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
GM+GD +H+T+P DG GA AM AL DA ++P DI YINAH TSTP GD E +AI
Sbjct: 260 GMTGDAYHMTAPAPDGEGAARAMKLALKDAGINPEDIDYINAHGTSTPAGDKAETQAIKR 319
Query: 266 LF--PAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYEC 323
+F A ++ VSSTK GHLLGAAG +E+ F++LA+ + ++PP +NL++P EE
Sbjct: 320 VFGEHAYKVAVSSTKSMTGHLLGAAGAVEAIFSVLAIRDQVIPPTINLDNPDEECDLDYV 379
Query: 324 PTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYK 358
P E K D AL NSFGFGGTNA L Y+
Sbjct: 380 PNEARERKID---YALSNSFGFGGTNASLVFKRYE 411
Score = 186 bits (475), Expect = 2e-55
Identities = 78/135 (57%), Positives = 94/135 (69%), Gaps = 3/135 (2%)
Query: 11 SPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLC-YGGHAIGDAFRLIQGGHADVMIAG 69
SP+FV NM AG +SI +K + C G HAIGDA RLI G ADVM+AG
Sbjct: 129 SPFFVPMAIINMA-AGHVSIRYGAKGPNHSIVTACATGAHAIGDAARLIAYGDADVMVAG 187
Query: 70 AAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHAL 129
AE+ I+ L IA F RAL+T+ N++P +ASRPFDK RDGFVMGEG+ ILVLEEL+HA
Sbjct: 188 GAEAAITPLGIAGFAAARALSTR-NDDPERASRPFDKDRDGFVMGEGAGILVLEELEHAK 246
Query: 130 ARSANIYAEIIGYGM 144
AR A IYAE++GYGM
Sbjct: 247 ARGAKIYAEVVGYGM 261
Score = 82.9 bits (206), Expect = 1e-17
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 157 LQGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIGM 207
L+ ++SP+FV + NM+AG +SI +G +GPNH + TACATGAHAIG
Sbjct: 121 LEKGPRRVSPFFVPMAIINMAAGHVSIRYGAKGPNHSIVTACATGAHAIGD 171
>gnl|CDD|215449 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase.
Length = 437
Score = 187 bits (476), Expect = 1e-55
Identities = 84/151 (55%), Positives = 102/151 (67%), Gaps = 6/151 (3%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
GMSGD HH+T P EDGRGA+LAMTRAL + L P + Y+NAHATSTPLGD +E +AI +
Sbjct: 283 GMSGDAHHITQPHEDGRGAVLAMTRALQQSGLHPNQVDYVNAHATSTPLGDAVEARAIKT 342
Query: 266 LF----PAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAGGY 321
+F + L SSTKGA GHLLGAAG +E+ F++LA+H G+ PP +NLE P
Sbjct: 343 VFSEHATSGGLAFSSTKGATGHLLGAAGAVEAIFSVLAIHHGIAPPTLNLERPDPIFDDG 402
Query: 322 ECPTAVTEWKTDGRRVALKNSFGFGGTNACL 352
P +T K R AL NSFGFGGTNA L
Sbjct: 403 FVP--LTASKAMLIRAALSNSFGFGGTNASL 431
Score = 178 bits (452), Expect = 5e-52
Identities = 77/136 (56%), Positives = 92/136 (67%), Gaps = 2/136 (1%)
Query: 10 LSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLC-YGGHAIGDAFRLIQGGHADVMIA 68
LSP+FV NM AG +SI + C G H+IGDAFR+IQ G ADVM+A
Sbjct: 150 LSPFFVPRILINMA-AGHVSIRYGFQGPNHAAVTACATGAHSIGDAFRMIQFGDADVMVA 208
Query: 69 GAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHA 128
G ES I LSIA F R RAL+T+FN+ P +ASRPFD RDGFV+GEG+ +LVLEEL+HA
Sbjct: 209 GGTESSIDALSIAGFSRSRALSTKFNSCPTEASRPFDCDRDGFVIGEGAGVLVLEELEHA 268
Query: 129 LARSANIYAEIIGYGM 144
R A IYAE+ GYGM
Sbjct: 269 KRRGAKIYAEVRGYGM 284
Score = 90.6 bits (225), Expect = 4e-20
Identities = 36/68 (52%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 140 IGYGMIDLSDVLSSNNAL-QGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTAC 198
IG G+ ++D+L + + + +LSP+FV RIL NM+AG +SI +GFQGPNH TAC
Sbjct: 125 IGGGIGSITDILEAAQLICEKRLRRLSPFFVPRILINMAAGHVSIRYGFQGPNHAAVTAC 184
Query: 199 ATGAHAIG 206
ATGAH+IG
Sbjct: 185 ATGAHSIG 192
>gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid
metabolism / Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 412
Score = 173 bits (442), Expect = 1e-50
Identities = 72/153 (47%), Positives = 92/153 (60%), Gaps = 4/153 (2%)
Query: 204 AIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAI 263
G + D +H+T+P DG GA+ AM AL DA L+P DI YINAH TSTP D E AI
Sbjct: 258 GYGTTSDAYHITAPAPDGEGAIRAMRAALADAGLTPEDIDYINAHGTSTPANDKAESLAI 317
Query: 264 GSLFPAQ--RLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAGGY 321
+F L VSSTK GH LGAAG +E+ ++LA+ +G++PP +NL++P EA
Sbjct: 318 KRVFGEHAKSLPVSSTKSLTGHTLGAAGAVEAIISLLALRDGIIPPTINLDNPDPEAADL 377
Query: 322 ECPTAVTEWKTDGRRVALKNSFGFGGTNACLCI 354
+ +T R AL NSFGFGGTNA L
Sbjct: 378 DVVPNEA--RTGAVRAALSNSFGFGGTNASLVF 408
Score = 160 bits (406), Expect = 2e-45
Identities = 77/145 (53%), Positives = 97/145 (66%), Gaps = 3/145 (2%)
Query: 1 MLYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLC-YGGHAIGDAFRLIQ 59
+L G +SP+ V PN+ AG ++I K C G HAIGDA RLI+
Sbjct: 119 LLLEGLRKRISPFLVPKMLPNLA-AGNVAIVFGLKGPNYTPVTACATGAHAIGDAVRLIR 177
Query: 60 GGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAI 119
G ADV+IAG AE+ I+ L IA F +RAL+T+ N++P +ASRPFDK RDGFV+GEG+
Sbjct: 178 LGKADVVIAGGAEAAITPLGIAGFEAMRALSTR-NDDPEKASRPFDKNRDGFVIGEGAGA 236
Query: 120 LVLEELDHALARSANIYAEIIGYGM 144
LVLEEL+HALAR A IYAEI+GYG
Sbjct: 237 LVLEELEHALARGAKIYAEIVGYGT 261
Score = 70.8 bits (174), Expect = 2e-13
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 139 IIGYGMIDLSDVLSSNNAL--QGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVST 196
IG G+ L D+ +AL +G ++SP+ V ++LPN++AG ++I G +GPN+ T
Sbjct: 101 AIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIVFGLKGPNYTPVT 160
Query: 197 ACATGAHAIGM 207
ACATGAHAIG
Sbjct: 161 ACATGAHAIGD 171
>gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 424
Score = 171 bits (436), Expect = 9e-50
Identities = 74/170 (43%), Positives = 98/170 (57%), Gaps = 11/170 (6%)
Query: 197 ACATGAHAI------GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
A A GA + G S D +H+T+ EDG GA AM AL A + P ++ ++NAHAT
Sbjct: 257 ALARGAPPLAELVGYGTSADAYHMTAGPEDGEGARRAMLIALRQAGIPPEEVQHLNAHAT 316
Query: 251 STPLGDVIELKAIGSLFPAQR-LMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNV 309
STP+GD+ E+ AI +F L VSSTK A GHLLGAAG +E+ FTILA+ + + PP +
Sbjct: 317 STPVGDLGEVAAIKKVFGHVSGLAVSSTKSATGHLLGAAGGVEAIFTILALRDQIAPPTL 376
Query: 310 NLEDPCEEAGGYE-CPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYK 358
NLE+P A G + D AL N FGFGG NA + ++
Sbjct: 377 NLENPDPAAEGLDVVANKARPMDMD---YALSNGFGFGGVNASILFRRWE 423
Score = 162 bits (412), Expect = 3e-46
Identities = 71/140 (50%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 10 LSPYFVNPFFPNMVPAGAISIDMDSK-----VQTLCVYCLCYGGHAIGDAFRLIQGGHAD 64
LSP+ + F NM AG +SI K T C G AIGDA RLI+ G AD
Sbjct: 139 LSPFTIPSFLTNMA-AGHVSIRYGFKGPLGAPVTACAA----GVQAIGDAARLIRSGEAD 193
Query: 65 VMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEE 124
V + G E+ I ++S+A F RAL+T+FN+ P QASRPFD+ RDGFVMGEG+ ILV+E
Sbjct: 194 VAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDRDRDGFVMGEGAGILVIET 253
Query: 125 LDHALARSANIYAEIIGYGM 144
L+HALAR A AE++GYG
Sbjct: 254 LEHALARGAPPLAELVGYGT 273
Score = 67.3 bits (165), Expect = 2e-12
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 163 KLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
+LSP+ + L NM+AG +SI +GF+GP TACA G AIG
Sbjct: 138 RLSPFTIPSFLTNMAAGHVSIRYGFKGPLGAPVTACAAGVQAIG 181
>gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 381
Score = 168 bits (427), Expect = 8e-49
Identities = 103/306 (33%), Positives = 147/306 (48%), Gaps = 77/306 (25%)
Query: 50 AIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRD 109
AI LIQ G +IAGA E+ I+ L++A F ++ ALA + PFD++R+
Sbjct: 152 AIAQGVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALAKT-------GAYPFDRQRE 204
Query: 110 GFVMGEGSAILVLEELDHALARSANIYAEIIGYGMIDLSDVLSSNNALQGSYNKLSPYFV 169
G V+GEG AILVLE + A R A+I YG
Sbjct: 205 GLVLGEGGAILVLESAELAQKRG----AKI--YG-------------------------- 232
Query: 170 TRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIGMSGDGHHLTSPREDGRGALLAMT 229
+IL GF G++ D +H+++P DG+ A+ A+
Sbjct: 233 -QIL------------GF------------------GLTCDAYHMSAPEPDGKSAIAAIQ 261
Query: 230 RALIDANLSPGDISYINAHATSTPLGDVIELKAIGSLFPAQRLMVSSTKGAHGHLLGAAG 289
+ L + L+P DI YI+AH T+T L D E I +LFP R+ VSSTKGA GH LGA+G
Sbjct: 262 QCLARSGLTPEDIDYIHAHGTATRLNDQREANLIQALFP-HRVAVSSTKGATGHTLGASG 320
Query: 290 NLESAFTILAVHEGLVPPNVNLEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTN 349
L AF++LA+ +PP V L++P + V + + + L SFGFGG N
Sbjct: 321 ALGVAFSLLALRHQQLPPCVGLQEPEFDL------NFVRQAQQSPLQNVLCLSFGFGGQN 374
Query: 350 ACLCIA 355
A + +
Sbjct: 375 AAIALG 380
Score = 27.7 bits (62), Expect = 9.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 172 ILPNMSAGQISIEHGFQGPNHCVSTACATGAHAI 205
LP+ +A + + G QGP ACATG AI
Sbjct: 120 TLPHQAAIAAARQIGTQGPVLAPMAACATGLWAI 153
>gnl|CDD|181657 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 405
Score = 167 bits (424), Expect = 4e-48
Identities = 100/309 (32%), Positives = 139/309 (44%), Gaps = 72/309 (23%)
Query: 47 GGHAIGDAFRLIQGGHADVMIAGAAES-CISQLSIAAFCRVRALATQFNNEPAQASRPFD 105
G IG A+ I+ G+ VM+AG AE C ++ A F + A +T+ N+ P RPFD
Sbjct: 167 GSQGIGYAYEAIKYGYQTVMLAGGAEELCPTE--AAVFDTLFATSTR-NDAPELTPRPFD 223
Query: 106 KRRDGFVMGEGSAILVLEELDHALARSANIYAEIIGYGMIDLSDVLSSNNALQGSYNKLS 165
RDG V+GEG+ LVLEEL+HA AR A IYAEI+G+G +N+
Sbjct: 224 ANRDGLVIGEGAGTLVLEELEHAKARGATIYAEIVGFG---------TNS---------D 265
Query: 166 PYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIGMSGDGHHLTSPREDGRGAL 225
VT+ P QI++E +
Sbjct: 266 GAHVTQ--PQAETMQIAMELALK------------------------------------- 286
Query: 226 LAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGSLFPAQRLMVSSTKGAHGHLL 285
DA L+P DI Y+NAH T+T GD+ E +A ++F A R+ +SS K GH L
Sbjct: 287 --------DAGLAPEDIGYVNAHGTATDRGDIAESQATAAVFGA-RMPISSLKSYFGHTL 337
Query: 286 GAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGF 345
GA G LE+ +I ++EG P +NL G + E + + N+F F
Sbjct: 338 GACGALEAWMSIEMMNEGWFAPTLNLTQVDPACG--ALDYIMGEAREIDTEYVMSNNFAF 395
Query: 346 GGTNACLCI 354
GG N L
Sbjct: 396 GGINTSLIF 404
Score = 30.0 bits (68), Expect = 2.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 171 RILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
R++P+ +A + + G +G S+AC +G+ IG
Sbjct: 137 RMMPHTTAVNVGLFFGLKGRVIPTSSACTSGSQGIG 172
>gnl|CDD|236398 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 392
Score = 148 bits (376), Expect = 3e-41
Identities = 66/152 (43%), Positives = 85/152 (55%), Gaps = 12/152 (7%)
Query: 205 IGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIG 264
+G S D HH+++P +G GA+LAM +AL DA L+P DI YIN H T+TPL D +E +A+
Sbjct: 243 VGESSDAHHMSAPHPEGLGAILAMQQALADAGLAPADIGYINLHGTATPLNDAMESRAVA 302
Query: 265 SLFPAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLE--DPCEEAGGYE 322
++F + SSTKG GH LGAAG +E+A LA+ GL P N DP
Sbjct: 303 AVFGD-GVPCSSTKGLTGHTLGAAGAVEAAICWLALRHGLPPHGWNTGQPDP-------A 354
Query: 323 CPTA--VTEWKTDGRRVALKNSFGFGGTNACL 352
P V + R L NSF FGG N L
Sbjct: 355 LPPLYLVENAQALAIRYVLSNSFAFGGNNCSL 386
Score = 40.6 bits (96), Expect = 9e-04
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 50 AIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRD 109
A RL++ G D I G +S + +L++ F + +L+ Q RPF RD
Sbjct: 166 VFASARRLLEAGLCDAAIVGGVDS-LCRLTLNGFNSLESLS-------PQPCRPFSANRD 217
Query: 110 GFVMGEGSAILVLE-ELDHALA 130
G +GE +A +LE E D A+A
Sbjct: 218 GINIGEAAAFFLLEREDDAAVA 239
>gnl|CDD|217236 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal
domain. The structure of beta-ketoacyl synthase is
similar to that of the thiolase family (pfam00108) and
also chalcone synthase. The active site of beta-ketoacyl
synthase is located between the N and C-terminal
domains.
Length = 119
Score = 123 bits (311), Expect = 1e-34
Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 208 SGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGSLF 267
H +G A+ AL DA L P D+ Y+ AH T TPLGD IE +A+ ++F
Sbjct: 11 QDGAAHNGLTAPNGPAQARAIRAALADAGLDPEDVDYVEAHGTGTPLGDPIEAEALKAVF 70
Query: 268 PA----QRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLE 312
Q L V S K GHL AAG +LA+ G++PP +NL+
Sbjct: 71 GPGRDSQPLPVGSVKSNIGHLEAAAGVAGLIKAVLALRHGVIPPTLNLD 119
>gnl|CDD|236129 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 418
Score = 127 bits (322), Expect = 2e-33
Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 3/152 (1%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
++ DG H+ +P +G A AMTRA+ A L+PGDI ++NAHAT T +GDV E KAI +
Sbjct: 270 SITSDGFHMVAPDPNGERAGHAMTRAIELAGLTPGDIDHVNAHATGTSVGDVAEGKAINN 329
Query: 266 LFPAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYECPT 325
R V + K A GH +GA G +ES T+LA+ +G++PP +NLE+ E +
Sbjct: 330 ALGGHRPAVYAPKSALGHSVGAVGAVESILTVLALRDGVIPPTLNLENLDPEI---DLDV 386
Query: 326 AVTEWKTDGRRVALKNSFGFGGTNACLCIAEY 357
E + R A+ NSFGFGG N L Y
Sbjct: 387 VAGEPRPGNYRYAINNSFGFGGHNVALAFGRY 418
Score = 110 bits (277), Expect = 3e-27
Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 2/136 (1%)
Query: 10 LSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLC-YGGHAIGDAFRLIQGGHADVMIA 68
+SP V + PN PA A+ ++ +K + C G AI A+R I G AD+ I
Sbjct: 137 VSPLAVQMYMPNG-PAAAVGLERHAKAGVITPVSACASGSEAIAQAWRQIVLGEADIAIC 195
Query: 69 GAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHA 128
G E+ I + IA F ++R + + N++PA A RPFDK RDGFV GEG A++V+E +HA
Sbjct: 196 GGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDRDGFVFGEGGALMVIETEEHA 255
Query: 129 LARSANIYAEIIGYGM 144
AR ANI A I+G +
Sbjct: 256 KARGANILARIMGASI 271
Score = 28.9 bits (65), Expect = 4.9
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 150 VLSSNNALQGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAI 205
V + ++ +SP V +PN A + +E + +ACA+G+ AI
Sbjct: 123 VFAYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAKAGVITPVSACASGSEAI 178
>gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 406
Score = 127 bits (321), Expect = 2e-33
Identities = 65/135 (48%), Positives = 84/135 (62%), Gaps = 3/135 (2%)
Query: 10 LSPYFVNPFFPNMVPAGAISIDMDSKVQTL-CVYCLCYGGHAIGDAFRLIQGGHADVMIA 68
+SP+F+ NM+ G ISI+ K L V G HAI +A + I G AD M+
Sbjct: 128 ISPFFIPSALVNML-GGFISIEHGLKGPNLSSVTACAAGTHAIIEAVKTIMLGGADKMLV 186
Query: 69 GAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHA 128
AES I + I F ++AL+T+ N++P +ASRPFDK RDGFVMGEG+ LVLEE + A
Sbjct: 187 VGAESAICPVGIGGFAAMKALSTR-NDDPKKASRPFDKDRDGFVMGEGAGALVLEEYESA 245
Query: 129 LARSANIYAEIIGYG 143
R A IYAEIIG+G
Sbjct: 246 KKRGAKIYAEIIGFG 260
Score = 125 bits (316), Expect = 1e-32
Identities = 67/164 (40%), Positives = 88/164 (53%), Gaps = 15/164 (9%)
Query: 197 ACATGAH------AIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
A GA G SGD +H+TSP +G L AM AL A I YINAH T
Sbjct: 245 AKKRGAKIYAEIIGFGESGDANHITSPAPEG--PLRAMKAALEMAGNPK--IDYINAHGT 300
Query: 251 STPLGDVIELKAIGSLFPAQRLM--VSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPN 308
STP D E A+ LF ++ + VSSTKG GH LGAAG +E+ +I+A+ +G++PP
Sbjct: 301 STPYNDKNETAALKELFGSKEKVPPVSSTKGQIGHCLGAAGAIEAVISIMAMRDGILPPT 360
Query: 309 VNLEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACL 352
+N E P E P + + + V + NSFGFGGTN +
Sbjct: 361 INQETPDPECDLDYIPNVARKAELN---VVMSNSFGFGGTNGVV 401
Score = 57.4 bits (139), Expect = 3e-09
Identities = 25/44 (56%), Positives = 29/44 (65%)
Query: 163 KLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
K+SP+F+ L NM G ISIEHG +GPN TACA G HAI
Sbjct: 127 KISPFFIPSALVNMLGGFISIEHGLKGPNLSSVTACAAGTHAII 170
>gnl|CDD|215421 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II.
Length = 540
Score = 124 bits (313), Expect = 1e-31
Identities = 66/153 (43%), Positives = 89/153 (58%), Gaps = 9/153 (5%)
Query: 210 DGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGSLFPA 269
D +H+T P +G G +L + +AL + +S D++YINAHATST GD+ E +A+ F
Sbjct: 393 DAYHMTEPHPEGAGVILCIEKALAQSGVSKEDVNYINAHATSTKAGDLKEYQALMRCFGQ 452
Query: 270 Q-RLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYECPTAVT 328
L V+STK GHLLGAAG +E+ T+ A+ G V PN+NLE+P T V
Sbjct: 453 NPELRVNSTKSMIGHLLGAAGAVEAIATVQAIRTGWVHPNINLENPESGVD-----TKVL 507
Query: 329 EWKTDGR---RVALKNSFGFGGTNACLCIAEYK 358
R +VAL NSFGFGG N+ + A YK
Sbjct: 508 VGPKKERLDIKVALSNSFGFGGHNSSILFAPYK 540
Score = 100 bits (249), Expect = 4e-23
Identities = 44/84 (52%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 58 IQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGS 117
I G ADVM+ G +++ I + + F RAL +Q N++P +ASRP+D RDGFVMGEG+
Sbjct: 305 IIRGEADVMLCGGSDAAIIPIGLGGFVACRAL-SQRNDDPTKASRPWDMNRDGFVMGEGA 363
Query: 118 AILVLEELDHALARSANIYAEIIG 141
+L+LEEL+HA R ANIYAE +G
Sbjct: 364 GVLLLEELEHAKKRGANIYAEFLG 387
Score = 45.0 bits (106), Expect = 4e-05
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 156 ALQGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAI 205
AL+ SY K++P+ V NM + ++++ G+ GPN+ +STACAT I
Sbjct: 249 ALRISYRKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCI 298
>gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II;
Provisional.
Length = 342
Score = 121 bits (304), Expect = 1e-31
Identities = 68/135 (50%), Positives = 86/135 (63%), Gaps = 2/135 (1%)
Query: 10 LSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQGGHADVMIA 68
LSP+ V F N+ AG +SI K C G AIGDA R+I+ ADV +
Sbjct: 57 LSPFTVPSFLVNLA-AGHVSIKHHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVALC 115
Query: 69 GAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHA 128
G AE+ I +S+A F RAL+T FN+ P +ASRPFD RDGFVMGEG+ +L++EEL+HA
Sbjct: 116 GGAEAVIDTVSLAGFAAARALSTHFNSTPEKASRPFDTARDGFVMGEGAGLLIIEELEHA 175
Query: 129 LARSANIYAEIIGYG 143
LAR A AEI+GYG
Sbjct: 176 LARGAKPLAEIVGYG 190
Score = 117 bits (293), Expect = 5e-30
Identities = 68/153 (44%), Positives = 92/153 (60%), Gaps = 3/153 (1%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
G S D +H+TS EDG GA AM AL A ++P + ++NAHATSTP+GD+ E+ AI
Sbjct: 190 GTSADAYHMTSGAEDGDGAYRAMKIALRQAGITPEQVQHLNAHATSTPVGDLGEINAIKH 249
Query: 266 LF-PAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYECP 324
LF + L ++STK A GHLLGAAG LE+ FT+LA+ + +VP +NLE+P A G
Sbjct: 250 LFGESNALAITSTKSATGHLLGAAGGLETIFTVLALRDQIVPATLNLENPDPAAKGLNII 309
Query: 325 TAVTEWKTDGRRVALKNSFGFGGTNACLCIAEY 357
+ AL N FGF G NA + + +
Sbjct: 310 AGNAQ--PHDMTYALSNGFGFAGVNASILLKRW 340
Score = 46.3 bits (109), Expect = 1e-05
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 163 KLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
+LSP+ V L N++AG +SI+H F+GP TACA G AIG
Sbjct: 56 RLSPFTVPSFLVNLAAGHVSIKHHFKGPIGAPVTACAAGVQAIG 99
>gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
acids into a large variety of different products, called
polyketides, by successive decarboxylating Claisen
condensations. PKSs can be divided into 2 groups,
modular type I PKSs consisting of one or more large
multifunctional proteins and iterative type II PKSs,
complexes of several monofunctional subunits.
Length = 421
Score = 120 bits (304), Expect = 9e-31
Identities = 58/155 (37%), Positives = 77/155 (49%), Gaps = 14/155 (9%)
Query: 210 DGH--HLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGSLF 267
DG +T+P G + RA A + P DI Y+ AH T TPLGD IE++A+ +F
Sbjct: 267 DGRTKGITAP--SGEAQAALIRRAYARAGVDPSDIDYVEAHGTGTPLGDPIEVEALAKVF 324
Query: 268 PA-----QRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCE----EA 318
Q L++ S K GHL AAG +LA+ G++PPN++ E P E
Sbjct: 325 GGSRSADQPLLIGSVKSNIGHLEAAAGLAGLIKVVLALEHGVIPPNLHFETPNPKIDFEE 384
Query: 319 GGYECPTAVTEWK-TDGRRVALKNSFGFGGTNACL 352
PT W G R A +SFGFGGTNA +
Sbjct: 385 SPLRVPTEARPWPAPAGPRRAGVSSFGFGGTNAHV 419
Score = 63.3 bits (155), Expect = 5e-11
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 54 AFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVM 113
A + ++ G D+ + G +S F + L+ P RPFD DG+V
Sbjct: 180 ACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS------PDGRCRPFDADADGYVR 233
Query: 114 GEGSAILVLEELDHALARSANIYAEIIGYG 143
GEG ++VL+ L AL IYA I G
Sbjct: 234 GEGVGVVVLKRLSDALRDGDRIYAVIRGSA 263
Score = 37.5 bits (88), Expect = 0.008
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 16/95 (16%)
Query: 120 LVLEELDHALARSANIYAE---------IIGYGMIDLSDVLSSNNALQGSYNKLSPYFVT 170
L+LE AL A E +G D ++L+ + + Y T
Sbjct: 90 LLLEVAWEALED-AGYSPESLAGSRTGVFVGASSSDYLELLARDPDE------IDAYAAT 142
Query: 171 RILPNMSAGQISIEHGFQGPNHCVSTACATGAHAI 205
A +IS +GP+ V TAC++ A+
Sbjct: 143 GTSRAFLANRISYFFDLRGPSLTVDTACSSSLVAL 177
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 122 bits (309), Expect = 1e-30
Identities = 91/314 (28%), Positives = 124/314 (39%), Gaps = 80/314 (25%)
Query: 54 AFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVM 113
A + ++ G D+ +AG +S S F L+ P + FD DG+V
Sbjct: 184 ACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLS------PDGRCKAFDADADGYVR 237
Query: 114 GEGSAILVLEELDHALARSANIYAEIIGYGMIDLSDVLSSNNALQGSYNKLSPYFVTRIL 173
GEG+ ++VL+ L A IYA I G S+ N G N L+
Sbjct: 238 GEGAGVVVLKRLSDAERDGDRIYAVIRG----------SAVNQD-GRSNGLTA------- 279
Query: 174 PNMSAGQISIEHGFQGPNHCVSTACATGAHAIGMSGDGHHLTSPREDGRGALLAMTRALI 233
PN+ A I AL
Sbjct: 280 PNLEAQADVIR---------------------------------------------EALA 294
Query: 234 DANLSPGDISYINAHATSTPLGDVIELKAIGSLF----PAQRLMVSSTKGAHGHLLGAAG 289
DA + P + Y+ AH T TPLGD IE A+G+++ PAQ + S K GHL AAG
Sbjct: 295 DAGIDPATVQYVEAHGTGTPLGDPIEANALGAVYGEGAPAQPCAIGSVKSNIGHLEAAAG 354
Query: 290 NLESAFTILAVHEGLVPPNVNLEDPCEEAGGYECP----TAVTEWKTDG--RRVALKNSF 343
T LA+ G +PP ++ + P E P T T W T G RR + +SF
Sbjct: 355 IAGLIKTALALKHGYIPPTLHFDTPNPEIDFDSSPFVVPTEATPWPTGGGPRRAGV-SSF 413
Query: 344 GFGGTNACLCIAEY 357
GFGGTNA + + E
Sbjct: 414 GFGGTNAHVILEEA 427
>gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed.
Length = 406
Score = 111 bits (280), Expect = 1e-27
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 49 HAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRR 108
H IG+A IQ G D++ AG E ++S F + AL+T++N+ P +ASR +D R
Sbjct: 167 HCIGNAVEQIQLGKQDIVFAGGGEELDWEMS-CLFDAMGALSTKYNDTPEKASRAYDANR 225
Query: 109 DGFVMGEGSAILVLEELDHALARSANIYAEIIGYG 143
DGFV+ G ++V+EEL+HALAR A IYAEI+GYG
Sbjct: 226 DGFVIAGGGGVVVVEELEHALARGAKIYAEIVGYG 260
Score = 109 bits (274), Expect = 1e-26
Identities = 66/169 (39%), Positives = 89/169 (52%), Gaps = 15/169 (8%)
Query: 197 ACATGAH------AIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
A A GA G + DG+ + +P G GA+ M AL + I YIN H T
Sbjct: 245 ALARGAKIYAEIVGYGATSDGYDMVAP--SGEGAVRCMQMALATVD---TPIDYINTHGT 299
Query: 251 STPLGDVIELKAIGSLFPAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVN 310
STP+GDV EL AI +F + +S+TK GH LGAAG E+ +++L + G + P+ N
Sbjct: 300 STPVGDVKELGAIREVFGDKSPAISATKSLTGHSLGAAGVQEAIYSLLMMEHGFIAPSAN 359
Query: 311 LEDPCEEAGGYECPTAVTEWKTDGR-RVALKNSFGFGGTNACLCIAEYK 358
+E+ +A G P VTE + + NSFGFGGTNA L YK
Sbjct: 360 IEELDPQAAG--MPI-VTETTDNAELTTVMSNSFGFGGTNATLVFRRYK 405
Score = 32.3 bits (74), Expect = 0.41
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 166 PYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIG 206
PY VT+ + + + ++ +G N+ +S+ACAT AH IG
Sbjct: 130 PYAVTKAMASTVSACLATPFKIKGVNYSISSACATSAHCIG 170
>gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type I and II
and polyketide synthases.They are characterized by the
utlization of acyl carrier protein (ACP) thioesters as
primer substrates, as well as the nature of their active
site residues.
Length = 407
Score = 109 bits (273), Expect = 1e-26
Identities = 87/337 (25%), Positives = 122/337 (36%), Gaps = 72/337 (21%)
Query: 20 PNMVPAGAISIDMDSK---VQTLCVYCLCYGGHAIGDAFRLIQGGHADVMIAGAAESCIS 76
PN AG ++I + S ++T C A+ A I+ G AD+++ G E
Sbjct: 137 PNT-VAGWVNILLLSSHGPIKTPVGACAT-ALEALDLAVEAIRSGKADIVVVGGVED-PL 193
Query: 77 QLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHALARSANIY 136
+ ++ F + AL+T EP + SRPFD+ RDGFV EG+ +LVLE + ALAR A IY
Sbjct: 194 EEGLSGFANMGALSTA-EEEPEEMSRPFDETRDGFVEAEGAGVLVLERAELALARGAPIY 252
Query: 137 AEIIGYGMIDLSDVLSSNNALQGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVST 196
+ G AG
Sbjct: 253 GRVAGTAS-----------------------------TTDGAG------RSVPAGGKGIA 277
Query: 197 ACATGAHAIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT-STPLG 255
A A L G D S A A + LG
Sbjct: 278 RAIRTALAKAGLSLD-DLDVISAHGTS------TPANDVAES-------RAIAEVAGALG 323
Query: 256 DVIELKAIGSLFPAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPC 315
+ + A +LF GH GAAG L+ + ++ GL+PP NL+D
Sbjct: 324 APLPVTAQKALF--------------GHSKGAAGALQLIGALQSLEHGLIPPTANLDDVD 369
Query: 316 EEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACL 352
+ + R AL N+FGFGG+NA L
Sbjct: 370 PDVEHLSVVGLSRDLNLKV-RAALVNAFGFGGSNAAL 405
Score = 31.6 bits (72), Expect = 0.66
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 131 RSANIYAEIIGYGMIDLSDVLSSNNALQGSYNKLSPYFVTR--ILPNMSAGQISIEHGF- 187
+ +G L + ++PY + + PN AG ++I
Sbjct: 99 EVGVVVGSGMGGLR-FLRR------GGKLDARAVNPYVSPKWMLSPNTVAGWVNILLLSS 151
Query: 188 QGPNHCVSTACATGAHAI 205
GP ACAT A+
Sbjct: 152 HGPIKTPVGACATALEAL 169
>gnl|CDD|235817 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 425
Score = 109 bits (274), Expect = 1e-26
Identities = 64/175 (36%), Positives = 84/175 (48%), Gaps = 21/175 (12%)
Query: 197 ACATGAHAIGM------SGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
A A GA +G+ D H T DG A+ A+ AL DA L+P I YINAH T
Sbjct: 258 AVARGAKILGIVAGCGEKADSFHRTRSSPDGSPAIGAIRAALADAGLTPEQIDYINAHGT 317
Query: 251 STPLGDVIELKAIGSLF--PAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPN 308
STP D +E + ++F + VSS K GH L AAG +E+ F++L + G +PP
Sbjct: 318 STPENDKMEYLGLSAVFGERLASIPVSSNKSMIGHTLTAAGAVEAVFSLLTIQTGRLPPT 377
Query: 309 VNLEDPCEEAGGYECPT----AVTEWKTDGR-RVALKNSFGFGGTNACLCIAEYK 358
+N ++P P V D R L NSFGFGG NA L +
Sbjct: 378 INYDNP--------DPAIPLDVVPNVARDARVTAVLSNSFGFGGQNASLVLTAEP 424
Score = 80.1 bits (198), Expect = 1e-16
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 38 TLCVYCLCYGGHAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEP 97
+L C G AI I+ G D + A + +S ++ F + AL+TQ N+ P
Sbjct: 170 SLSTAC-ASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSALSTQ-NDPP 227
Query: 98 AQASRPFDKRRDGFVMGEGSAILVLEELDHALARSANIYAEIIGYG 143
+AS+PF K RDGFVM EG+ LVLE L+ A+AR A I + G G
Sbjct: 228 EKASKPFSKDRDGFVMAEGAGALVLESLESAVARGAKILGIVAGCG 273
>gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein
synthase; Validated.
Length = 410
Score = 107 bits (269), Expect = 4e-26
Identities = 52/150 (34%), Positives = 73/150 (48%), Gaps = 7/150 (4%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
M D + P G + + AL A L P DI Y+N H T +PLGD EL A+ +
Sbjct: 267 SMRLDANRGPDP--SLEGEMRVIRAALRRAGLGPEDIDYVNPHGTGSPLGDETELAALFA 324
Query: 266 LFPAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYECPT 325
+++TK GH L AAG +E T+L + G + P+ NL++P +E + T
Sbjct: 325 SG-LAHAWINATKSLTGHGLSAAGIVELIATLLQMRAGFLHPSRNLDEPIDERFRWVGST 383
Query: 326 AVTEWKTDGRRVALKNSFGFGGTNACLCIA 355
A + R AL SFGFGG N L +
Sbjct: 384 AESA----RIRYALSLSFGFGGINTALVLE 409
Score = 85.1 bits (211), Expect = 3e-18
Identities = 38/99 (38%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 47 GGHAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQ-FNNEPAQASRPFD 105
G A+ A RL+Q G D IA A +S A + A+ + F +EP A RPFD
Sbjct: 170 GQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFD 229
Query: 106 KRRDGFVMGEGSAILVLEELDHALARSANIYAEIIGYGM 144
+ RDGF+ GE +VLE + A R A YA+++G+ M
Sbjct: 230 QDRDGFIYGEACGAVVLESAESARRRGARPYAKLLGWSM 268
>gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal
domain. The structure of beta-ketoacyl synthase is
similar to that of the thiolase family (pfam00108) and
also chalcone synthase. The active site of beta-ketoacyl
synthase is located between the N and C-terminal
domains. The N-terminal domain contains most of the
structures involved in dimer formation and also the
active site cysteine.
Length = 243
Score = 93.1 bits (232), Expect = 5e-22
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 7/126 (5%)
Query: 4 RGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGGHAIGD-AFRLIQGGH 62
G +SPY + P++ AG IS + + ++ V C A R I+ G
Sbjct: 124 AGGPRRVSPYLTGAWMPSVA-AGRISYRLGLRGPSVTVDTACSSSLVALHAAVRSIRRGE 182
Query: 63 ADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVL 122
D+ +AG E+ ++ A F AL + + P +A PF DGFV GEG ++L
Sbjct: 183 CDLALAGGVEAPLTPGGFAGFSAAGALLS--PDGPCKAFDPFA---DGFVRGEGVGAVLL 237
Query: 123 EELDHA 128
+EL A
Sbjct: 238 KELSEA 243
Score = 58.8 bits (143), Expect = 4e-10
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 157 LQGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAI 205
G ++SPY +P+++AG+IS G +GP+ V TAC++ A+
Sbjct: 123 SAGGPRRVSPYLTGAWMPSVAAGRISYRLGLRGPSVTVDTACSSSLVAL 171
>gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes;
Family of enzymes that catalyze the formation of a new
carbon-carbon bond by a decarboxylating Claisen-like
condensation reaction. Members are involved in the
synthesis of fatty acids and polyketides, a diverse
group of natural products. Both pathways are an
iterative series of additions of small carbon units,
usually acetate, to a nascent acyl group. There are 2
classes of decarboxylating condensing enzymes, which can
be distinguished by sequence similarity, type of active
site residues and type of primer units (acetyl CoA or
acyl carrier protein (ACP) linked units).
Length = 332
Score = 93.9 bits (233), Expect = 1e-21
Identities = 55/152 (36%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Query: 201 GAHAIGMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIEL 260
A + G G + + G A AL A L+ DI Y+ AH T TP+GDV EL
Sbjct: 186 VGTAATIDGAG--MGAFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKEL 243
Query: 261 KAIGSLFPAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAGG 320
K + S F + VS+TK G+L AA L +L + G +PP++++E+ E
Sbjct: 244 KLLRSEFGDKSPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIHIEELDEAG-- 301
Query: 321 YECPTAVTEWKTDGRRVALKNSFGFGGTNACL 352
VTE R AL N FG GGTNA L
Sbjct: 302 ---LNIVTETTPRELRTALLNGFGLGGTNATL 330
Score = 73.4 bits (180), Expect = 2e-14
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 25 AGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAF 83
+G I+ + V C G HA+ A +Q G D+++AG +E + +
Sbjct: 76 SGQIATPLGIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDCEFD 135
Query: 84 CRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHALARSANIYAEIIGYG 143
P +ASR FD DGFV G+G+ LV+EEL+HALAR A+IYAEI+G
Sbjct: 136 AMGALS------TPEKASRTFDAAADGFVFGDGAGALVVEELEHALARGAHIYAEIVGTA 189
Score = 39.5 bits (92), Expect = 0.002
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 166 PYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIGMSGD 210
PY VT+ + ++GQI+ G GP + VS ACA HA+ ++ D
Sbjct: 64 PYVVTKAMFPGASGQIATPLGIHGPAYDVSAACAGSLHALSLAAD 108
>gnl|CDD|238428 cd00832, CLF, Chain-length factor (CLF) is a factor required for
polyketide chain initiation of aromatic
antibiotic-producing polyketide synthases (PKSs) of
filamentous bacteria. CLFs have been shown to have
decarboxylase activity towards malonyl-acyl carrier
protein (ACP). CLFs are similar to other elongation
ketosynthase domains, but their active site cysteine is
replaced by a conserved glutamine.
Length = 399
Score = 75.5 bits (186), Expect = 4e-15
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 50 AIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRD 109
A+ A RL++ G ++++G +S + A L+T +++PA+A PFD
Sbjct: 167 ALAQARRLVRRG-TPLVVSGGVDSALCPWGWVAQLSSGRLST--SDDPARAYLPFDAAAA 223
Query: 110 GFVMGEGSAILVLEELDHALARSANIYAEIIGYG 143
G+V GEG AILVLE+ A R A +Y EI GY
Sbjct: 224 GYVPGEGGAILVLEDAAAARERGARVYGEIAGYA 257
Score = 62.4 bits (152), Expect = 8e-11
Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
Query: 208 SGDGHHLTSPREDGRGALL--AMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
+G P GR L A+ AL DA L+P D+ + A A P D E A+ +
Sbjct: 254 AGYAATFDPPPGSGRPPGLARAIRLALADAGLTPEDVDVVFADAAGVPELDRAEAAALAA 313
Query: 266 LFPAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYECPT 325
+F + + V++ K G L L+ A +LA+ +G++PP VN+ D Y
Sbjct: 314 VFGPRGVPVTAPKTMTGRLYAGGAPLDVATALLALRDGVIPPTVNVTDV---PPAYGLDL 370
Query: 326 AVTEWKTDGRRVALKNSFGFGGTNACL 352
+ R AL + G GG N+ L
Sbjct: 371 VTGRPRPAALRTALVLARGRGGFNSAL 397
Score = 31.6 bits (72), Expect = 0.56
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 177 SAGQISIEHGFQGPNHCVSTACATGAHAIGMSGDGHHLTSPREDGRGALLAMTRALIDAN 236
+ GQISI HG +GP+ V A G A+ + R RG L ++ +D+
Sbjct: 140 NTGQISIRHGMRGPSGVVVAEQAGGLDALAQAR--------RLVRRGTPLVVSGG-VDSA 190
Query: 237 LSPG 240
L P
Sbjct: 191 LCPW 194
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are
encoded near genes for homologs of PfaB, PfaC, and/or
PfaD.
Length = 2582
Score = 74.7 bits (183), Expect = 2e-14
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 18/169 (10%)
Query: 205 IGMSGDGH--HLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKA 262
+G S DG + +PR +G+ A+ RA DA +P I AH T T GDV E
Sbjct: 298 VGASSDGKFKSIYAPRPEGQAK--ALKRAYDDAGFAPHTCGLIEAHGTGTAAGDVAEFGG 355
Query: 263 IGSLFPA-----QRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEE 317
+ S+F Q + + S K GH AG +LA+H ++PP +N++ P +
Sbjct: 356 LVSVFSQDNDQKQHIALGSVKSQIGHTKSTAGTAGMIKAVLALHHKVLPPTINVDQPNPK 415
Query: 318 AGGYECP----TAVTEW--KTDG--RRVALKNSFGFGGTNACLCIAEYK 358
P T W + DG RR + +SFGFGGTN + + EY
Sbjct: 416 LDIENSPFYLNTETRPWMQREDGTPRRAGI-SSFGFGGTNFHMVLEEYS 463
Score = 37.7 bits (87), Expect = 0.010
Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 19 FPNM---VPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQGGHADVMIAGAAESC 74
FP V +G I+ D V C G AI A + G +++MI G +
Sbjct: 177 FPGSLGNVISGRIANRFDLGGMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTD 236
Query: 75 ISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHALARSAN 134
S +F + A T NE Q PFD G ++GEG ++ L+ L+ A
Sbjct: 237 NSPFMYMSFSKTPAFTT---NEDIQ---PFDIDSKGMMIGEGIGMMALKRLEDAERDGDR 290
Query: 135 IYAEIIGYG 143
IYA I G G
Sbjct: 291 IYAVIKGVG 299
>gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
catalyze a (decarboxylating or non-decarboxylating)
Claisen-like condensation reaction. Members are share
strong structural similarity, and are involved in the
synthesis and degradation of fatty acids, and the
production of polyketides, a diverse group of natural
products.
Length = 254
Score = 71.7 bits (176), Expect = 2e-14
Identities = 60/232 (25%), Positives = 80/232 (34%), Gaps = 77/232 (33%)
Query: 177 SAGQISIEHGFQ-GPNHCVSTACATGAHAIGMS----------------------GDG-- 211
+AGQ++ G GP + V+ ACATG A+ ++ GDG
Sbjct: 46 AAGQLAYHLGISGGPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEEFVFGDGAA 105
Query: 212 -----------------------HHLTS------PREDGRGALLAMTRALIDANLSPGDI 242
T P G G A +AL A L+P DI
Sbjct: 106 AAVVESEEHALRRGAHPQAEIVSTAATFDGASMVPAVSGEGLARAARKALEGAGLTPSDI 165
Query: 243 SYINAHATSTPLGDVIELKAIGSLFPAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHE 302
Y+ AH T TP+GD +EL + VS+T GH LGAAG +L +
Sbjct: 166 DYVEAHGTGTPIGDAVELALGLDPDGVRSPAVSATLIMTGHPLGAAGLAILDELLLMLEH 225
Query: 303 GLVPPNVNLEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCI 354
+PP R L FG GGTNA + +
Sbjct: 226 EFIPP-----------------------TPREPRTVLLLGFGLGGTNAAVVL 254
Score = 40.5 bits (95), Expect = 7e-04
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 37/97 (38%)
Query: 47 GGHAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDK 106
G A+ A + +Q G AD+++AG +E
Sbjct: 71 GLTALALAVQQVQNGKADIVLAGGSEEF-------------------------------- 98
Query: 107 RRDGFVMGEGSAILVLEELDHALARSANIYAEIIGYG 143
V G+G+A V+E +HAL R A+ AEI+
Sbjct: 99 -----VFGDGAAAAVVESEEHALRRGAHPQAEIVSTA 130
>gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase. The structure of
beta-ketoacyl synthase is similar to that of the
thiolase family and also chalcone synthase. The active
site of beta-ketoacyl synthase is located between the N
and C-terminal domains.
Length = 298
Score = 59.7 bits (146), Expect = 4e-10
Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 10/96 (10%)
Query: 268 PAQRLMVSSTKGAHGHLLGAAGNLESAF--TILAVHEGLVPPNVNLEDP----CEEAGGY 321
PAQ L++ S K GHL AAG + +LA+ G++PP ++ E P E
Sbjct: 206 PAQ-LLIGSVKSNIGHLEAAAGV--AGLIKVVLALKHGVIPPTLHFETPNPHIDLEESPL 262
Query: 322 ECPTAVTEWKTDGR-RVALKNSFGFGGTNACLCIAE 356
PT +T W GR R A +SFGFGGTNA + + E
Sbjct: 263 RVPTELTPWPPPGRPRRAGVSSFGFGGTNAHVILEE 298
Score = 56.6 bits (138), Expect = 4e-09
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 54 AFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVM 113
A + ++ G D+ +AG +S + R L+ P + FD DG+V
Sbjct: 107 ACQSLRSGECDMALAGGVNLILSPDTFVGLSRAGMLS------PDGRCKTFDASADGYVR 160
Query: 114 GEGSAILVLEELDHALARSANIYAEIIG 141
GEG ++VL+ L AL I A I G
Sbjct: 161 GEGVGVVVLKRLSDALRDGDPILAVIRG 188
>gnl|CDD|235819 PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 398
Score = 41.9 bits (99), Expect = 3e-04
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 50 AIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRD 109
AI AF I G +D + G A + + + L P + D
Sbjct: 181 AIEIAFARIASGQSDHALVGGAYNAERPDMLLLYELGGLLLKG-GWAPVWSRGGEDG--G 237
Query: 110 GFVMGEGSAILVLEELDHALARSANIYAEI 139
GF++G G A LVLE +HA AR A YA I
Sbjct: 238 GFILGSGGAFLVLESREHAEARGARPYARI 267
>gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases. This
model represents a large family of enzymes which
catalyze the thiolysis of a linear fatty acid CoA (or
acetoacetyl-CoA) using a second CoA molecule to produce
acetyl-CoA and a CoA-ester product two carbons shorter
(or, alternatively, the condensation of two molecules of
acetyl-CoA to produce acetoacetyl-CoA and CoA). This
enzyme is also known as "thiolase", "3-ketoacyl-CoA
thiolase", "beta-ketothiolase" and "Fatty oxidation
complex beta subunit". When catalyzing the degradative
reaction on fatty acids the corresponding EC number is
2.3.1.16. The condensation reaction corresponds to
2.3.1.9. Note that the enzymes which catalyze the
condensation are generally not involved in fatty acid
biosynthesis, which is carried out by a decarboxylating
condensation of acetyl and malonyl esters of acyl
carrier proteins. Rather, this activity may produce
acetoacetyl-CoA for pathways such as IPP biosynthesis in
the absence of sufficient fatty acid oxidation [Fatty
acid and phospholipid metabolism, Other].
Length = 386
Score = 36.8 bits (86), Expect = 0.013
Identities = 31/123 (25%), Positives = 44/123 (35%), Gaps = 12/123 (9%)
Query: 21 NMVPA--GAISIDMDSKVQTLCVYCLC-YGGHAIGDAFRLIQGGHADVMIAGAAESCISQ 77
A A+ + V V C G A+ A +LI+ G ADV++AG ES +S+
Sbjct: 57 QQNIARQAALLAGLPESVPAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVES-MSR 115
Query: 78 LSIAAFCRVRALATQ--FNNEPAQASRPFDKRRDGFVMGEGSAILVL------EELDHAL 129
+ + R E D +G MG + L EE D
Sbjct: 116 VPYSVPRSRRWGVKPGNAELEDQILKDGLDDPLNGLSMGLTAENLAKKYGISREEQDEYA 175
Query: 130 ARS 132
RS
Sbjct: 176 LRS 178
>gnl|CDD|235715 PRK06147, PRK06147, 3-oxoacyl-(acyl carrier protein) synthase;
Validated.
Length = 348
Score = 36.5 bits (85), Expect = 0.017
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 15/100 (15%)
Query: 45 CYGGHAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPF 104
G A+ A RLI G ++ +S ++ ++A + L T N+
Sbjct: 134 VSGAVALAQARRLIAAGGCPRVLVAGVDSLLTGPTLAHYEARDRLLTSQNSN-------- 185
Query: 105 DKRRDGFVMGEGSAILVLEELDHALARSANIYAEIIGYGM 144
GF+ GE +A ++L A + +G G
Sbjct: 186 -----GFIPGEAAAAVLLGRPAGGEAPGLPLLG--LGLGR 218
>gnl|CDD|220974 pfam11085, YqhR, Conserved membrane protein YqhR. This family is
conserved in the Bacillaceae family of the Firmicutes.
The function is not known.
Length = 174
Score = 34.6 bits (80), Expect = 0.038
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 13 YFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYG 47
+ +NP FP++ P +D ++ V TLC+Y L YG
Sbjct: 115 FVLNPIFPDVKP--VTELDKNTIVTTLCIYIL-YG 146
>gnl|CDD|181624 PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated.
Length = 401
Score = 34.5 bits (80), Expect = 0.080
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 44 LCYGG-HAIGDAFRLIQGGHADVMIAGAAES 73
LC G A+G A R I+ G A++MIAG ES
Sbjct: 89 LCGSGMDAVGTAARAIKAGEAELMIAGGVES 119
>gnl|CDD|211910 TIGR04187, GRASP_SAV_5884, ATP-grasp ribosomal peptide maturase,
SAV_5884 family. Members of this protein family are
ATP-grasp ligase family enzymes that regularly occur in
a contexts with a methyltransferase and a putative
ribosomally translated post-translationally modified
peptide precursor. Because of this conserved gene
neighborhood and close sequence similarity to ATP-grasp
enzymes from microviridin/marinostatin biosynthesis
cassettes, this enzyme is suggested also to serve as a
peptide maturase.
Length = 312
Score = 32.7 bits (75), Expect = 0.23
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Query: 68 AGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFV--------MGEGSAI 119
AE QL+ AA C +R AT N+P A R F R G V E
Sbjct: 118 IARAEYKPWQLAAAARCGLRVPATLITNDPDAA-RDFAARYGGVVYKPLSGTPYTEDGRT 176
Query: 120 LVL-------EELDHALARSA 133
V+ +E+D A+A +A
Sbjct: 177 KVVYTTRVTADEIDDAVAGTA 197
>gnl|CDD|183998 PRK13359, PRK13359, beta-ketoadipyl CoA thiolase; Provisional.
Length = 400
Score = 32.8 bits (75), Expect = 0.27
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 44 LCYGG-HAIGDAFRLIQGGHADVMIAGAAES 73
LC G A+G A R I+ G A +MIAG ES
Sbjct: 89 LCGSGMDAVGVAARAIKSGEAALMIAGGVES 119
>gnl|CDD|131483 TIGR02430, pcaF, 3-oxoadipyl-CoA thiolase. Members of this family
are designated beta-ketoadipyl CoA thiolase, an enzyme
that acts at the end of pathways for the degradation of
protocatechuate (from benzoate and related compounds)
and of phenylacetic acid.
Length = 400
Score = 32.4 bits (74), Expect = 0.32
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 44 LCYGG-HAIGDAFRLIQGGHADVMIAGAAES 73
LC G AIG A R I+ G AD++IAG ES
Sbjct: 88 LCGSGLDAIGMAARAIKAGEADLLIAGGVES 118
>gnl|CDD|224968 COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta
subunit [Lipid metabolism].
Length = 225
Score = 31.5 bits (72), Expect = 0.45
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 53 DAFRLIQGGHADVMIAGAAE 72
D+F +I+GGH DV + GAA+
Sbjct: 90 DSFAMIRGGHIDVAVLGAAQ 109
>gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze
the reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and eukaryotes (cytosol,
microbodies and mitochondria). There are 2 functional
different classes: thiolase-I (3-ketoacyl-CoA thiolase)
and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I
can cleave longer fatty acid molecules and plays an
important role in the beta-oxidative degradation of
fatty acids. Thiolase-II has a high substrate
specificity. Although it can cleave acetoacyl-CoA, its
main function is the synthesis of acetoacyl-CoA from two
molecules of acetyl-CoA, which gives it importance in
several biosynthetic pathways.
Length = 386
Score = 32.1 bits (74), Expect = 0.45
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 50 AIGDAFRLIQGGHADVMIAGAAES 73
A+ A + I G ADV++AG ES
Sbjct: 90 AVALAAQSIAAGEADVVVAGGVES 113
>gnl|CDD|225096 COG2185, Sbm, Methylmalonyl-CoA mutase, C-terminal domain/subunit
(cobalamin-binding) [Lipid metabolism].
Length = 143
Score = 30.7 bits (70), Expect = 0.57
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 20/99 (20%)
Query: 186 GFQGPNHCVSTACATGAHAIGMSG-DGHHLT-------SPREDGRGALLAMTRALIDANL 237
FQ P V A IG+S DG HLT + RE G +L ++ +
Sbjct: 48 LFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDIL----VVVGGVI 103
Query: 238 SPGDISYINAHAT------STPLGDVIE--LKAIGSLFP 268
PGD + TP+ + + L +G+
Sbjct: 104 PPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLGADRG 142
>gnl|CDD|214882 smart00882, CoA_trans, Coenzyme A transferase. Coenzyme A (CoA)
transferases belong to an evolutionary conserved family
of enzymes catalyzing the reversible transfer of CoA
from one carboxylic acid to another. They have been
identified in many prokaryotes and in mammalian tissues.
The bacterial enzymes are heterodimer of two subunits (A
and B) of about 25 Kd each while eukaryotic SCOT consist
of a single chain which is colinear with the two
bacterial subunits.
Length = 212
Score = 31.0 bits (71), Expect = 0.70
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 53 DAFRLIQGGHADVMIAGAAE 72
++F L QGG AD + AGAA
Sbjct: 85 ESFLLPQGGLADRLRAGAAG 104
>gnl|CDD|237841 PRK14867, PRK14867, DNA topoisomerase VI subunit B; Provisional.
Length = 659
Score = 31.7 bits (72), Expect = 0.71
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 283 HLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAG 319
H+LG +G L S TI +HE LV N D CEEA
Sbjct: 26 HMLGYSGKLRSMTTI--IHE-LV---TNSLDACEEAE 56
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 30.5 bits (70), Expect = 1.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 14/56 (25%)
Query: 19 FPNMVPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQGGHADVMIAGAAES 73
P VPA ++I+ +C G A+ A + I+ G AD+++AG ES
Sbjct: 75 LPVEVPA--LTINK-----------VCGSGLKAVALAAQAIRAGDADIVVAGGQES 117
>gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism].
Length = 392
Score = 30.7 bits (70), Expect = 1.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 47 GGHAIGDAFRLIQGGHADVMIAGAAES 73
G A+ A + I G ADV++AG E
Sbjct: 95 GLAAVRLAAQAIASGEADVVLAGGVEK 121
>gnl|CDD|99813 cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin
reductase (FNR) proteins combine the FAD and NAD(P)
binding regions of FNR with an iron-sulfur binding
cluster domain. Ferredoxin-NADP+ (oxido)reductase is an
FAD-containing enzyme that catalyzes the reversible
electron transfer between NADP(H) and electron carrier
proteins such as ferredoxin and flavodoxin. Isoforms of
these flavoproteins (i.e. having a non-covalently bound
FAD as a prosthetic group) are present in chloroplasts,
mitochondria, and bacteria in which they participate in
a wide variety of redox metabolic pathways. The
C-terminal domain contains most of the NADP(H) binding
residues and the N-terminal domain interacts
non-covalently with the isoalloxazine rings of the
flavin molecule which lies largely in a large gap
between the two domains. Ferredoxin-NADP+ reductase
first accepts one electron from reduced ferredoxin to
form a flavin semiquinone intermediate. The enzyme then
accepts a second electron to form FADH2 which then
transfers two electrons and a proton to NADP+ to form
NADPH.
Length = 235
Score = 30.3 bits (69), Expect = 1.3
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 225 LLAMTRALIDANLSPGDISYINAHATSTPLGDVI---ELKAIGSLFPAQRLMVSSTKGAH 281
L++M R D P + ++ T DVI EL+ + P + + T+ A
Sbjct: 122 LMSMIRYRRDLGW-PVPFRLL--YSARTA-EDVIFRDELEQLARRHPNLHVTEALTRAAP 177
Query: 282 GHLLGAAGNLESAFTILAV 300
LG AG + + V
Sbjct: 178 ADWLGPAGRITADLIAELV 196
>gnl|CDD|215368 PLN02683, PLN02683, pyruvate dehydrogenase E1 component subunit
beta.
Length = 356
Score = 30.2 bits (68), Expect = 1.6
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 176 MSAGQISIEHGFQGPNHCVSTACATGAH------AIGMSGDGHHLTSP--REDGRGALLA 227
MSAGQIS+ F+GPN A GA A S G + +P ED RG L A
Sbjct: 127 MSAGQISVPIVFRGPN---GAAAGVGAQHSQCFAAWYSSVPGLKVLAPYSSEDARGLLKA 183
Query: 228 MTR 230
R
Sbjct: 184 AIR 186
>gnl|CDD|215722 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 262
Score = 30.0 bits (68), Expect = 2.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 50 AIGDAFRLIQGGHADVMIAGAAES 73
A+ A + I+ G AD+++AG ES
Sbjct: 92 AVALAAQAIRAGDADIVVAGGVES 115
>gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional.
Length = 399
Score = 29.6 bits (67), Expect = 2.4
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 12/54 (22%)
Query: 20 PNMVPAGAISIDMDSKVQTLCVYCLCYGGHAIGDAFRLIQGGHADVMIAGAAES 73
PN V T+ +C G A+ A I+ G ADVMIA ES
Sbjct: 83 PNSVGG-----------VTVNRFC-ASGLQAVAMAADRIRVGEADVMIAAGVES 124
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell
surface and is extremely large (although apparently
lacking in repeat structure) and is important for the
process of invasion of the RBCs by the parasite. These
proteins are found in P. falciparum, P. vivax and P.
yoelii.
Length = 2757
Score = 30.0 bits (67), Expect = 2.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 145 IDLSDVLSSNNALQGSYNKLSPYFVTRILPN 175
IDL ++ +NNA K+SPY V L N
Sbjct: 623 IDLKKIIENNNAYIDELAKISPYQVPEHLKN 653
>gnl|CDD|235741 PRK06205, PRK06205, acetyl-CoA acetyltransferase; Provisional.
Length = 404
Score = 29.2 bits (66), Expect = 3.3
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 45 CYGG-HAIGDAFRLIQGGHADVMIAGAAES 73
C G A+ A +Q G ADV+IAG AES
Sbjct: 88 CGSGLQAVITAAMQVQTGAADVVIAGGAES 117
>gnl|CDD|185292 PRK15394, PRK15394,
4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol
deformylase ArnD; Provisional.
Length = 296
Score = 28.7 bits (65), Expect = 4.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 326 AVTEWKTDGRRVALKNSFGF 345
A W+ D R V K +FGF
Sbjct: 148 AAAGWRADQRVVEAKEAFGF 167
>gnl|CDD|220979 pfam11101, DUF2884, Protein of unknown function (DUF2884). Some
members in this bacterial family of proteins are
annotated as YggN which currently has no known function.
Length = 228
Score = 28.5 bits (64), Expect = 4.4
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 57 LIQGGHADVMIAGAA--ESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMG 114
+ Q V +A A E L AA ++ L + A+ F K DGFV+G
Sbjct: 65 VAQLASEGVELANDALDEVATGLLGSAARAKLTTLMDELK---ARVDDSFYKGGDGFVLG 121
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 28.9 bits (65), Expect = 4.8
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 141 GYGMIDLSDVLSSNNALQGSYNKLSPYFVTRILPNMSAGQIS---IEHG----FQGPN 191
GYG+ + + V+S N + P V RILP M A +S IE G +GPN
Sbjct: 510 GYGVTECAPVVSINVPMAAK-----PGTVGRILPGMDARLLSVPGIEQGGRLQLKGPN 562
>gnl|CDD|181072 PRK07661, PRK07661, acetyl-CoA acetyltransferase; Provisional.
Length = 391
Score = 28.6 bits (64), Expect = 5.6
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 12/54 (22%)
Query: 20 PNMVPAGAISIDMDSKVQTLCVYCLCYGGHAIGDAFRLIQGGHADVMIAGAAES 73
P VPA I+I+ YC G +I I GH++ +IAG AES
Sbjct: 78 PYTVPA--ITINR---------YC-SSGLQSIAYGAERIMLGHSEAVIAGGAES 119
>gnl|CDD|107348 cd06353, PBP1_BmpA_Med_like, Periplasmic binding domain of the
basic membrane lipoprotein Med in Bacillus and its close
homologs from other bacteria and Archaea. Periplasmic
binding domain of the basic membrane lipoprotein Med in
Bacillus and its close homologs from other bacteria and
Archaea. Med, a cell-surface localized protein, which
regulates the competence transcription factor gene comK
in Bacillus subtilis, lacks the DNA binding domain when
compared with structures of transcription regulators
from the LacI family. Nevertheless, Med has significant
overall sequence homology to various periplasmic
substrate-binding proteins. Moreover, the structure of
Med shows a striking similarity to PnrA, a periplasmic
nucleoside binding protein of an ATP-binding cassette
transport system. Members of this group contain the type
I periplasmic sugar-binding protein-like fold.
Length = 258
Score = 28.3 bits (64), Expect = 6.1
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 194 VSTACATGAHAIGMSGD------GHHLTSPREDGRGALLAMTRALIDANLSPGDISY 244
+ A G +AIG D LTS + +A +A++D D
Sbjct: 193 IQAAEEKGVYAIGYVSDMSKFAPKAVLTSAVWNWGPYYVAAVKAVLDGTWKGEDYWG 249
>gnl|CDD|181265 PRK08170, PRK08170, acetyl-CoA acetyltransferase; Provisional.
Length = 426
Score = 27.7 bits (62), Expect = 9.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 47 GGHAIGDAFRLIQGGHADVMIAGAAE 72
G A+ A I G AD+++AG E
Sbjct: 92 GMQALDSAAANIALGRADLVLAGGVE 117
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,298,657
Number of extensions: 1762871
Number of successful extensions: 1587
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1510
Number of HSP's successfully gapped: 113
Length of query: 359
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 261
Effective length of database: 6,590,910
Effective search space: 1720227510
Effective search space used: 1720227510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)