RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5293
(359 letters)
>d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 161
Score = 122 bits (308), Expect = 1e-34
Identities = 81/154 (52%), Positives = 103/154 (66%), Gaps = 6/154 (3%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
GMSGD HH+T P EDG+GA+LAMTRAL + L P I Y+NAHATSTP+GD +E +AI +
Sbjct: 8 GMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKT 67
Query: 266 LF----PAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAGGY 321
+F + L SSTKGA GHLLGAAG +E+ F+ILA+H G+ P +N+++P
Sbjct: 68 VFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKR 127
Query: 322 ECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIA 355
P +T K R A+ NSFGFGGTNA L A
Sbjct: 128 FMP--LTTSKKMLVRTAMSNSFGFGGTNASLLFA 159
>d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 161
Score = 116 bits (291), Expect = 4e-32
Identities = 73/153 (47%), Positives = 94/153 (61%), Gaps = 4/153 (2%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
GMS D +H+TSP E+G GA LAM AL DA + I Y+NAH TSTP GD E +A+ +
Sbjct: 10 GMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKT 69
Query: 266 LF--PAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYEC 323
+F A R++VSSTK GHLLGAAG +ES ++ILA+ + VPP +NL++P E
Sbjct: 70 IFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFV 129
Query: 324 PTAVTEWKTDGRRVALKNSFGFGGTNACLCIAE 356
P + G L NSFGFGGTN L +
Sbjct: 130 PHEARQV--SGMEYTLCNSFGFGGTNGSLIFKK 160
>d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 161
Score = 114 bits (287), Expect = 1e-31
Identities = 69/155 (44%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
M+ D +H+T+P DGRGA A+ AL D+ L P +SYINAH TSTP DV E +AI
Sbjct: 10 AMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQ 69
Query: 266 LF--PAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYEC 323
A + VSSTK GHLLG +G +E+ T++A+ E VPP +NLE+P E
Sbjct: 70 ALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLDYV 129
Query: 324 PTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEYK 358
P VAL NSFGFGG N L +Y+
Sbjct: 130 PGQSRALIV---DVALSNSFGFGGHNVTLAFKKYQ 161
>d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 159
Score = 112 bits (282), Expect = 7e-31
Identities = 70/151 (46%), Positives = 89/151 (58%), Gaps = 6/151 (3%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
G S D HH+T P +G+GA LAM RAL DA ++P + YINAH TSTP+GD E+ AI
Sbjct: 10 GRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKR 69
Query: 266 LFPA--QRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYEC 323
+F +RLMVSSTK GHLLGAAG +E+ T+ A++ G++PP E+
Sbjct: 70 VFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPT----INLEDPDPELD 125
Query: 324 PTAVTEWKTDGRRVALKNSFGFGGTNACLCI 354
V E + AL NSF FGG NA L
Sbjct: 126 LDFVPEPREAKVDYALSNSFAFGGHNAVLAF 156
>d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 151
Score = 109 bits (274), Expect = 8e-30
Identities = 57/151 (37%), Positives = 85/151 (56%), Gaps = 8/151 (5%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
G + DG + +P G GA+ M A+ I Y+N+H TSTP+GDV EL AI
Sbjct: 8 GATSDGADMVAP--SGEGAVRCMKMAMHG---VDTPIDYLNSHGTSTPVGDVKELAAIRE 62
Query: 266 LFPAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYECPT 325
+F + +S+TK GH LGAAG E+ +++L + G + P++N+E+ E+A G T
Sbjct: 63 VFGDKSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVT 122
Query: 326 AVTEWKTDGRRVALKNSFGFGGTNACLCIAE 356
T+ + + NSFGFGGTNA L + +
Sbjct: 123 ETTDRE---LTTVMSNSFGFGGTNATLVMRK 150
>d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 158
Score = 100 bits (250), Expect = 2e-26
Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 4/153 (2%)
Query: 206 GMSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHATSTPLGDVIELKAIGS 265
G + D +H+TSP +G+GA+ A+ AL +A +SP ++Y+NAH TSTP + E AI +
Sbjct: 10 GNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVA 69
Query: 266 LFPAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVNLEDPCEEAGGYECPT 325
+ + + VSSTK GHLLGAAG +E+ TI A+ VP + +
Sbjct: 70 VL-GKEVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVYG 128
Query: 326 AVTEWKTDGRRVALKNSFGFGGTNACLCIAEYK 358
E + A+ N+FGFGG NA L ++
Sbjct: 129 QGLEKE---IPYAISNTFGFGGHNAVLAFKRWE 158
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 249
Score = 103 bits (257), Expect = 2e-26
Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 3/134 (2%)
Query: 1 MLYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQ 59
+ +SP+F+ NM I++ + V C G A+G A R+IQ
Sbjct: 118 VFLERGPNRISPFFIPMMIANMAS-AHIAMRYGFTGPSSTVVTACATGADALGSALRMIQ 176
Query: 60 GGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAI 119
G AD+++AG E+ I+ ++I AF +RAL+T+ N EP +ASRPF RDGFVMGEG+ +
Sbjct: 177 LGEADLVLAGGTEAAITPMAIGAFAVMRALSTR-NEEPEKASRPFTLSRDGFVMGEGAGV 235
Query: 120 LVLEELDHALARSA 133
LVLE +HA R A
Sbjct: 236 LVLEAYEHAKKRGA 249
Score = 45.5 bits (107), Expect = 4e-06
Identities = 21/47 (44%), Positives = 35/47 (74%)
Query: 162 NKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIGMS 208
N++SP+F+ ++ NM++ I++ +GF GP+ V TACATGA A+G +
Sbjct: 125 NRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSA 171
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 270
Score = 103 bits (257), Expect = 3e-26
Identities = 60/125 (48%), Positives = 77/125 (61%), Gaps = 1/125 (0%)
Query: 12 PYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQGGHADVMIAGA 70
F P + +G +S+ + C G H+IGDA R+IQ G ADVM+AG
Sbjct: 146 SPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGG 205
Query: 71 AESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHALA 130
ES I LS+A F R RAL+T+FN+ P +ASRPFD RDGFV+GEGS ++VLEE +HA
Sbjct: 206 TESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCDRDGFVIGEGSGVIVLEEYEHAKR 265
Query: 131 RSANI 135
R A I
Sbjct: 266 RGAKI 270
Score = 34.2 bits (77), Expect = 0.015
Identities = 25/43 (58%), Positives = 36/43 (83%)
Query: 166 PYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIGMS 208
P+F+ +IL NM++G +S+++GFQGPNH TACATGAH+IG +
Sbjct: 147 PFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA 189
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 100 bits (250), Expect = 3e-25
Identities = 58/134 (43%), Positives = 79/134 (58%), Gaps = 3/134 (2%)
Query: 1 MLYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQ 59
L G +SP+FV NMV AG ++I + ++ + G H IG A R+I
Sbjct: 119 SLMNGGPRKISPFFVPSTIVNMV-AGHLTIMYGLRGPSISIATAQTSGVHNIGHAARIIA 177
Query: 60 GGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAI 119
G ADVM+AG AE + L + F RAL+T+ N+ P ASRP+DK RDGFV+G+G+ +
Sbjct: 178 YGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGFVLGDGAGM 236
Query: 120 LVLEELDHALARSA 133
LVLEE +HA R A
Sbjct: 237 LVLEEYEHAKKRGA 250
Score = 42.9 bits (100), Expect = 2e-05
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 164 LSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIGMSGDGHH 213
+SP+FV + NM AG ++I +G +GP+ ++TA +G H IG +
Sbjct: 128 ISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARIIA 177
>d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 256
Score = 95.7 bits (237), Expect = 2e-23
Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
Query: 10 LSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGGH-AIGDAFRLIQGGHADVMIA 68
+ P + PNM +G +++ + + C + AIGDAFR I+ G DVM+
Sbjct: 135 VKPMTLPKALPNMA-SGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLV 193
Query: 69 GAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAILVLEELDHA 128
G E+ I+ +IA F + AL+T +P +AS PFDK R+GFVMGEGS +LVLE L+HA
Sbjct: 194 GGTEASITPFAIAGFQALTALST--TEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHA 251
Query: 129 LARSA 133
R A
Sbjct: 252 EKRGA 256
Score = 51.4 bits (122), Expect = 4e-08
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 158 QGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIGMSGDGHH 213
+ ++ P + + LPNM++G +++ G G ++TAC++ AIG +
Sbjct: 129 EKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIK 184
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 93.5 bits (231), Expect = 1e-22
Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 1 MLYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGGHAIGDAFRLIQG 60
M + PY V + V A + V H IG+A IQ
Sbjct: 120 MRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQL 179
Query: 61 GHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAIL 120
G D++ AG E F + AL+T++N+ P +ASR +D RDGFV+ G ++
Sbjct: 180 GKQDIVFAGGGEELC-WEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMV 238
Query: 121 VLEELDHALARSANI 135
V+EEL+HALAR A+I
Sbjct: 239 VVEELEHALARGAHI 253
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 250
Score = 87.7 bits (216), Expect = 1e-20
Identities = 64/134 (47%), Positives = 84/134 (62%), Gaps = 3/134 (2%)
Query: 1 MLYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQ 59
+L + SP+ + NM +G +I++ +K C C G +AIGDAFRL+Q
Sbjct: 119 ILLDKGPSRCSPFMIPMMIANM-ASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQ 177
Query: 60 GGHADVMIAGAAESCISQLSIAAFCRVRALATQFNNEPAQASRPFDKRRDGFVMGEGSAI 119
G+A MI G E+ I+ LS A F RAL+ + N++P ASRPFDK RDGFVMGEGS I
Sbjct: 178 NGYAKAMICGGTEAAITPLSYAGFASARALSFR-NDDPLHASRPFDKDRDGFVMGEGSGI 236
Query: 120 LVLEELDHALARSA 133
L+LEEL+ ALAR A
Sbjct: 237 LILEELESALARGA 250
Score = 31.1 bits (69), Expect = 0.16
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 139 IIGYGMIDLSDVLSSNNALQGS-YNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTA 197
+IG G+ L + L ++ SP+ + ++ NM++G +I G +GPN+C TA
Sbjct: 102 LIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTA 161
Query: 198 CATGAHAIGMSGDGHH 213
CA G++AIG +
Sbjct: 162 CAAGSNAIGDAFRLVQ 177
>d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 205
Score = 79.9 bits (196), Expect = 3e-18
Identities = 55/171 (32%), Positives = 73/171 (42%), Gaps = 11/171 (6%)
Query: 195 STACATGAHAIG------MSGDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAH 248
+A A GA + +H+T + DGR + AL ++ DI YINAH
Sbjct: 32 DSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRTDATDIDYINAH 91
Query: 249 ATSTPLGDVIELKAIGSLF--PAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVP 306
+ T D E A A+R VSS K GH LGA G+LE A +LA+ G+VP
Sbjct: 92 GSGTRQNDRHETAAYKRALGEHARRTPVSSIKSMVGHSLGAIGSLEIAACVLALEHGVVP 151
Query: 307 PNVNLEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEY 357
P NL E P E K R L GFGG + + + +
Sbjct: 152 PTANLRTSDPECDLDYVPLEARERKL---RSVLTVGSGFGGFQSAMVLRDA 199
Score = 71.4 bits (174), Expect = 3e-15
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
Query: 95 NEPAQASRPFDKRRDGFVMGEGSAILVLEELDHALARSANIYAEIIGYGMIDLSDVLSSN 154
++P ASRPFD RDGFV+ EG+A+ VLE+ D ALAR A I+AEI GY + ++
Sbjct: 1 DDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGL 60
Query: 155 NALQGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACATGAHAIGMSGDGHHL 214
A + + + + HG A A+G +
Sbjct: 61 KADGREMAETIRVALDESRTDATDIDYINAHGSG-TRQNDRHETAAYKRALGEHARRTPV 119
Query: 215 TSPR 218
+S +
Sbjct: 120 SSIK 123
>d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 194
Score = 67.7 bits (164), Expect = 5e-14
Identities = 24/104 (23%), Positives = 34/104 (32%)
Query: 96 EPAQASRPFDKRRDGFVMGEGSAILVLEELDHALARSANIYAEIIGYGMIDLSDVLSSNN 155
+P +A PFD+R G+V GEG AILVLE+ A AR + + S
Sbjct: 1 DPDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGR 60
Query: 156 ALQGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACA 199
P + G + + A
Sbjct: 61 PAGLERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARAIG 104
Score = 66.5 bits (161), Expect = 1e-13
Identities = 37/167 (22%), Positives = 58/167 (34%), Gaps = 7/167 (4%)
Query: 195 STACATGAHAIGMS----GDGHHLTSPREDGRGALLAMTRALIDANLSPGDISYINAHAT 250
+ A A G H G A+ AL DA P D+ + A
Sbjct: 31 AAAEARGRHDAYGELAGCASTFDPAPGSGRPAGLERAIRLALNDAGTGPEDVDVVFADGA 90
Query: 251 STPLGDVIELKAIGSLFPAQRLMVSSTKGAHGHLLGAAGNLESAFTILAVHEGLVPPNVN 310
P D E +AIG +F + + V+ K G L G L+ ++++ EG++ P
Sbjct: 91 GVPELDAAEARAIGRVFGREGVPVTVPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAG 150
Query: 311 LEDPCEEAGGYECPTAVTEWKTDGRRVALKNSFGFGGTNACLCIAEY 357
+ E G R AL + G G N+ + +
Sbjct: 151 VTSVPREYGIDLVLGEPRSTAP---RTALVLARGRWGFNSAAVLRRF 194
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 216
Score = 58.5 bits (140), Expect = 1e-10
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 1 MLYRGATTTLSPYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGGH-AIGDAFRLIQ 59
+ LS + + P++ ++ + ++ V C G ++G+A R I+
Sbjct: 124 RDWEVDAAWLSRHMFDYLVPSV-MPAEVAWAVGAEGPVTMVSTGCTSGLDSVGNAVRAIE 182
Query: 60 GGHADVMIAGAAESCISQLSIAAFCRVRALAT 91
G ADVM AGAA++ I+ + +A F +RA
Sbjct: 183 EGSADVMFAGAADTPITPIVVACFDAIRATTA 214
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 50.5 bits (119), Expect = 5e-08
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 12 PYFVNPFFPNMVPAGAISIDMDSKVQTLCVYCLCYGG-HAIGDAFRLIQGGHADVMIAGA 70
+ + + V G ISI + + + GG A+G A R I+ G ++++G
Sbjct: 127 SVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRG-TPLVVSGG 185
Query: 71 AESCISQLSIAAFCRVRALAT 91
+S + + ++T
Sbjct: 186 VDSALDPWGWVSQIASGRIST 206
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 589
Score = 27.7 bits (61), Expect = 2.2
Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 29 SIDMDSKVQTLCVYCLCYGGHAIGDAFRLIQGGHADVMIAGAAESCISQLSIAAFCRVRA 88
++ K++ + +Y G + +LIQ I I+ ++ V
Sbjct: 395 NVSTYDKIRIILLYIFLKNGITEENLNKLIQ----HAQIPPEDSEIITNMAHLGVPIVTD 450
Query: 89 LATQFNNEPAQASRPFDK 106
+ ++P + R ++
Sbjct: 451 STLRRRSKPERKERISEQ 468
>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum
[TaxId: 1050]}
Length = 280
Score = 27.4 bits (61), Expect = 2.9
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 157 LQGSYNKLSPYFVTRILPNMSAGQISIEHGFQGPNHCVSTACA-TGAHAIGMSG 209
L G++ PY + L +S H P H ++ + T A+ M G
Sbjct: 146 LMGAWGHGFPYGILSHLDWVSNVGYQFLHFHYNPAHMLAISFFFTNCLALSMHG 199
>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta
{Acidaminococcus fermentans [TaxId: 905]}
Length = 260
Score = 26.5 bits (58), Expect = 5.4
Identities = 2/24 (8%), Positives = 7/24 (29%)
Query: 53 DAFRLIQGGHADVMIAGAAESCIS 76
+ + + + G A+
Sbjct: 89 EINEYLHKANRLIAFIGGAQIDPY 112
>d1smxa_ b.40.4.5 (A:) S1-domain of Ribonuclease E {Escherichia coli
[TaxId: 562]}
Length = 87
Score = 24.5 bits (53), Expect = 8.2
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 169 VTRILPNMSAGQISI---EHGFQ 188
+TRI P++ A + HGF
Sbjct: 8 ITRIEPSLEAAFVDYGAERHGFL 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,306,227
Number of extensions: 58678
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 33
Length of query: 359
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,226,816
Effective search space: 334920768
Effective search space used: 334920768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)