BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5295
         (248 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
           Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
 pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
           Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
 pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
           Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
          Length = 602

 Score = 28.9 bits (63), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 89  SITRHDFVETNGDNFLVTIPFLGRMTYQFL 118
           ++  H + ET GDN  +TIP  G  T Q +
Sbjct: 483 AVGEHPYTETKGDNLNLTIPEPGLSTVQAV 512


>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
 pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
           Isoenzyme Exo1 In Complex With
           4i,4iii,4v-S-Trithiocellohexaose
 pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
           Isoenzyme Exo1 In Complex With
           2-Deoxy-2-Fluoro-Alpha-D-Glucoside
 pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
           Isoenzyme Exo1 In Complex With Cyclohexitol
 pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
           Isoenzyme Exo1
 pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
           Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
           3i-Thiolaminaritrioside
          Length = 605

 Score = 28.5 bits (62), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 89  SITRHDFVETNGDNFLVTIPFLGRMTYQFL 118
           ++  H + ET GDN  +TIP  G  T Q +
Sbjct: 483 AVGEHPYTETKGDNLNLTIPEPGLSTVQAV 512


>pdb|1WRA|A Chain A, Crystal Structure Of Phosphorylcholine Esterase Domain Of
           The Virulence Factor Choline Binding Protein E From
           Streptococcus Pneumoniae
 pdb|1WRA|B Chain B, Crystal Structure Of Phosphorylcholine Esterase Domain Of
           The Virulence Factor Choline Binding Protein E From
           Streptococcus Pneumoniae
          Length = 308

 Score = 27.7 bits (60), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 57  VHWCADTWGSTEVPLIGKTLIRSFREHHVDPTSITRHDFVET 98
           VH   D +G    PLIGK  +  F  HH    S T+ DF++ 
Sbjct: 206 VHGAEDKYG----PLIGKVDLMKFNHHHDTNKSNTK-DFIKN 242


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.141    0.473 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,642,296
Number of Sequences: 62578
Number of extensions: 308424
Number of successful extensions: 1900
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1898
Number of HSP's gapped (non-prelim): 5
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)