BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5295
(248 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5PLL7|TM189_HUMAN Transmembrane protein 189 OS=Homo sapiens GN=TMEM189 PE=1 SV=3
Length = 270
Score = 276 bits (705), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 132/245 (53%), Positives = 167/245 (68%), Gaps = 16/245 (6%)
Query: 4 GKRIQEFISVTLCIILMLVNTYFIGSRIRLENITTLLISAVVGILTADFASGFVHWCADT 63
GKR+QE+ SV LC L+ N + R E+ +++ V G L ADF SG VHW ADT
Sbjct: 41 GKRLQEWCSVILCFSLIAHNLVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADT 100
Query: 64 WGSTEVPLIGKTLIRSFREHHVDPTSITRHDFVETNGDNFLVTIPFLGRMTYQFLTMNEQ 123
WGS E+P++GK IR FREHH+DPT+ITRHDF+ETNGDN LVT+ L M Y+F T + +
Sbjct: 101 WGSVELPIVGKAFIRPFREHHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPE 160
Query: 124 QIKQNFNLYCFILLLAIFVAFTNQCHDVSSSSFDITFYFQIHKWSHTYYSLPRWVLFLQD 183
++Q + CF+ L IF FTN QIHKWSHTY+ LPRWV LQD
Sbjct: 161 ALEQLYPWECFVFCLIIFGTFTN----------------QIHKWSHTYFGLPRWVTLLQD 204
Query: 184 CHLILPRRHHRYHHVAPHETYYCITTGWLNWPLEQIRFWPHLESVVTFVTGYKPRTDDLK 243
H+ILPR+HHR HHV+PHETY+CITTGWLN+PLE+I FW LE ++ +TG KPR DD+K
Sbjct: 205 WHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEKIGFWRRLEDLIQGLTGEKPRADDMK 264
Query: 244 WTKKM 248
W +K+
Sbjct: 265 WAQKI 269
>sp|Q99LQ7|TM189_MOUSE Transmembrane protein 189 OS=Mus musculus GN=Tmem189 PE=2 SV=1
Length = 271
Score = 269 bits (688), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/245 (53%), Positives = 163/245 (66%), Gaps = 16/245 (6%)
Query: 4 GKRIQEFISVTLCIILMLVNTYFIGSRIRLENITTLLISAVVGILTADFASGFVHWCADT 63
GKR QE+ SV LC L+ N + R E+ +++ V G L ADF SG VHW ADT
Sbjct: 42 GKRFQEWCSVILCFSLIAHNLVHLLLLARWEHTPLVILGVVAGALVADFLSGLVHWGADT 101
Query: 64 WGSTEVPLIGKTLIRSFREHHVDPTSITRHDFVETNGDNFLVTIPFLGRMTYQFLTMNEQ 123
WGS ++P++GK IR FREHH+DPT+ITRHDF+ETNGDN LVT+ L M Y+F T + +
Sbjct: 102 WGSVDLPIVGKAFIRPFREHHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTQSPE 161
Query: 124 QIKQNFNLYCFILLLAIFVAFTNQCHDVSSSSFDITFYFQIHKWSHTYYSLPRWVLFLQD 183
++Q + CF+ L IF FTN QIHKWSHTY LP WV LQD
Sbjct: 162 TLEQLYPWECFVFCLTIFGTFTN----------------QIHKWSHTYLGLPYWVTVLQD 205
Query: 184 CHLILPRRHHRYHHVAPHETYYCITTGWLNWPLEQIRFWPHLESVVTFVTGYKPRTDDLK 243
H+ILPR+HHR HHVAPHETY+CITTGWLN+PLE I FW LE ++ +TG KPR DD+K
Sbjct: 206 WHVILPRKHHRIHHVAPHETYFCITTGWLNYPLEVIGFWRRLEDLIQGLTGEKPRADDMK 265
Query: 244 WTKKM 248
W +K+
Sbjct: 266 WAQKI 270
>sp|A6QLM0|TM189_BOVIN Transmembrane protein 189 OS=Bos taurus GN=TMEM189 PE=2 SV=1
Length = 271
Score = 266 bits (679), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/245 (52%), Positives = 166/245 (67%), Gaps = 16/245 (6%)
Query: 4 GKRIQEFISVTLCIILMLVNTYFIGSRIRLENITTLLISAVVGILTADFASGFVHWCADT 63
GKR QE+ V LC L+ N + R E+ +++ V G L ADF SG VHW ADT
Sbjct: 42 GKRFQEWCCVVLCFSLIAHNMAHLLLLARWEHTPLVMLGMVAGALLADFLSGLVHWGADT 101
Query: 64 WGSTEVPLIGKTLIRSFREHHVDPTSITRHDFVETNGDNFLVTIPFLGRMTYQFLTMNEQ 123
WGS E+P++GK IR FREHH+DPT+ITRHDF+ETNGDN L+T+ L M Y+F T + +
Sbjct: 102 WGSVELPIVGKAFIRPFREHHIDPTAITRHDFIETNGDNCLLTLLPLLNMAYKFRTQSPE 161
Query: 124 QIKQNFNLYCFILLLAIFVAFTNQCHDVSSSSFDITFYFQIHKWSHTYYSLPRWVLFLQD 183
++Q + CF+ L IF FTN QIHKWSHTY+ LP WV+FLQD
Sbjct: 162 VLEQLYPWECFVFCLIIFGTFTN----------------QIHKWSHTYFGLPCWVVFLQD 205
Query: 184 CHLILPRRHHRYHHVAPHETYYCITTGWLNWPLEQIRFWPHLESVVTFVTGYKPRTDDLK 243
H+ILPR+HHR HHV+PHETY+CITTGWLN+PLE++ FW LE ++ +TG KPR DD+K
Sbjct: 206 WHVILPRKHHRIHHVSPHETYFCITTGWLNYPLERMGFWRRLEDIIQALTGEKPRADDMK 265
Query: 244 WTKKM 248
W +K+
Sbjct: 266 WAQKI 270
>sp|Q5UR78|YL630_MIMIV Uncharacterized protein L630 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L630 PE=4 SV=1
Length = 200
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 95/215 (44%), Gaps = 29/215 (13%)
Query: 33 LENITTLLISAVVGILTADFASGFVHWCADTWGSTEVPLIGKTLIRSFREHHVDPTSITR 92
L I I V+G L +DF G HW DT+ S P+IGKT I R HHV P +
Sbjct: 2 LLTIIDKFIQIVLGYLLSDFIMGIYHWIKDTYFSPFTPIIGKTFIWGSRLHHVRPRYVLE 61
Query: 93 HDFVETNGDNFLVTIPFLGRMTYQFLTMNEQQIKQNFNLYCFILLLAIFVAFTNQCHDVS 152
+ D+ T+ ++G + + F L F++ + I ++ +
Sbjct: 62 FTDKDLIIDSAKWTLSWIGPLFFWF------------GLTPFLVTMFIMISLNDV----- 104
Query: 153 SSSFDITFYFQIHKWSHTY-YSLPRWVLFLQDCHLILPRRHHRYHHVAPHETYYCITTGW 211
IHK++H + P W LQ H HH+APHE YC T +
Sbjct: 105 -----------IHKYTHEIDHERPMWATILQRIGFFQSHDEHHLHHIAPHEINYCPVTPY 153
Query: 212 LNWPLEQIRFWPHLESVVTFVTGYKPRTDDLKWTK 246
+N LE+I W LES V ++TG KPR + ++ +
Sbjct: 154 VNIWLEKINLWRKLESFVEYLTGVKPRAKEYEFVE 188
>sp|Q9Z0X2|SL9A5_RAT Sodium/hydrogen exchanger 5 OS=Rattus norvegicus GN=Slc9a5 PE=1
SV=1
Length = 898
Score = 32.0 bits (71), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 19 LMLVNTYFIGSRIRLENITTLLISAVVGILTADFASGFVHW 59
++L + YF+ SR+ +N+ +L AVVG L F +G W
Sbjct: 117 IVLDSGYFMPSRLFFDNLGAILTYAVVGTLWNAFTTGVALW 157
>sp|Q1B568|GLGB_MYCSS 1,4-alpha-glucan branching enzyme GlgB OS=Mycobacterium sp. (strain
MCS) GN=glgB PE=3 SV=1
Length = 759
Score = 31.6 bits (70), Expect = 5.1, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 75 TLIRSFREHHVDPTSIT---RHDFVETNGDNFLVTIPFLGRMTYQF 117
T+IR++R H + ++ RH F F VT+PF G + Y+
Sbjct: 50 TVIRAYRPHATEVAAVVGGERHVFTHLEAGVFAVTLPFTGLIDYRL 95
>sp|A1UJW9|GLGB_MYCSK 1,4-alpha-glucan branching enzyme GlgB OS=Mycobacterium sp. (strain
KMS) GN=glgB PE=3 SV=1
Length = 759
Score = 31.6 bits (70), Expect = 5.1, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 75 TLIRSFREHHVDPTSIT---RHDFVETNGDNFLVTIPFLGRMTYQF 117
T+IR++R H + ++ RH F F VT+PF G + Y+
Sbjct: 50 TVIRAYRPHATEVAAVVGGERHVFTHLEAGVFAVTLPFTGLIDYRL 95
>sp|A3Q396|GLGB_MYCSJ 1,4-alpha-glucan branching enzyme GlgB OS=Mycobacterium sp. (strain
JLS) GN=glgB PE=3 SV=1
Length = 759
Score = 31.6 bits (70), Expect = 5.1, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 75 TLIRSFREHHVDPTSIT---RHDFVETNGDNFLVTIPFLGRMTYQF 117
T+IR++R H + ++ RH F F VT+PF G + Y+
Sbjct: 50 TVIRAYRPHATEVAAVVGGERHVFTHLEAGVFAVTLPFTGLIDYRL 95
>sp|Q14940|SL9A5_HUMAN Sodium/hydrogen exchanger 5 OS=Homo sapiens GN=SLC9A5 PE=1 SV=2
Length = 896
Score = 31.2 bits (69), Expect = 6.3, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 19 LMLVNTYFIGSRIRLENITTLLISAVVGILTADFASGFVHW 59
++L + YF+ SR+ +N+ +L AVVG L F +G W
Sbjct: 115 IVLDSGYFMPSRLFFDNLGAILTYAVVGTLWNAFTTGAALW 155
>sp|Q9SIB2|KCS12_ARATH 3-ketoacyl-CoA synthase 12 OS=Arabidopsis thaliana GN=KCS12 PE=2
SV=1
Length = 476
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 51 DFASGFVHWCADTWGSTEVPLIGKTLIRSFREHHVDPTSITRHDFVETNGDNF 103
+F +G H+C T G + IG +L E+ ++P +T H F T+ +
Sbjct: 337 NFKTGIEHFCIHTGGKAVIDGIGHSL--DLNEYDIEPARMTLHRFGNTSASSL 387
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.141 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,296,324
Number of Sequences: 539616
Number of extensions: 3597928
Number of successful extensions: 8841
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8831
Number of HSP's gapped (non-prelim): 14
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)