Query psy5295
Match_columns 248
No_of_seqs 107 out of 113
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 22:53:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3011|consensus 100.0 8.4E-89 1.8E-93 612.0 16.4 216 2-248 77-292 (293)
2 PF10520 Kua-UEV1_localn: Kua- 100.0 1.4E-84 3.1E-89 560.7 11.4 178 47-241 1-178 (178)
3 PLN02434 fatty acid hydroxylas 96.5 0.0025 5.5E-08 58.1 3.9 44 164-215 180-223 (237)
4 COG3000 ERG3 Sterol desaturase 94.6 0.061 1.3E-06 49.0 5.3 32 186-217 200-232 (271)
5 PLN02869 fatty aldehyde decarb 86.7 0.33 7.1E-06 50.0 1.5 44 186-230 241-286 (620)
6 KOG0539|consensus 65.7 4.2 9.2E-05 37.4 2.1 52 156-215 174-226 (240)
7 PF13320 DUF4091: Domain of un 64.0 5.9 0.00013 29.6 2.2 33 53-105 3-35 (68)
8 PF06612 DUF1146: Protein of u 44.2 38 0.00082 23.9 3.6 19 35-53 29-47 (48)
9 PF10625 UspB: Universal stres 42.6 89 0.0019 25.8 5.9 70 12-92 4-82 (107)
10 TIGR00680 kdpA K+-transporting 36.7 24 0.00052 36.4 2.3 25 221-246 41-65 (563)
11 KOG0873|consensus 35.4 21 0.00045 33.9 1.5 35 190-225 229-263 (283)
12 PF11674 DUF3270: Protein of u 35.0 2E+02 0.0044 23.0 6.8 44 4-49 33-80 (90)
13 KOG1362|consensus 33.8 18 0.00038 37.3 0.8 29 36-64 506-535 (577)
14 cd03513 CrtW_beta-carotene-ket 33.5 3.6E+02 0.0079 24.3 9.2 27 173-203 191-217 (225)
15 PF05399 EVI2A: Ectropic viral 30.7 69 0.0015 29.6 3.9 21 83-103 107-128 (227)
16 PF04304 DUF454: Protein of un 30.3 28 0.00062 25.2 1.2 21 67-88 6-26 (71)
17 PLN02220 delta-9 acyl-lipid de 29.9 55 0.0012 31.0 3.3 35 164-198 76-119 (299)
18 TIGR02327 int_mem_ywzB conserv 29.1 1.7E+02 0.0037 22.1 5.2 25 35-59 36-60 (68)
19 COG3169 Uncharacterized protei 29.0 1.4E+02 0.0031 24.8 5.1 41 4-47 71-111 (116)
20 PRK05482 potassium-transportin 28.6 36 0.00078 35.1 2.0 24 222-246 39-62 (559)
21 PF00487 FA_desaturase: Fatty 28.4 21 0.00046 29.4 0.3 35 164-198 24-66 (257)
22 PF09900 DUF2127: Predicted me 27.3 2E+02 0.0042 24.1 5.9 39 3-41 90-128 (141)
23 PF13150 DUF3989: Protein of u 26.3 1.1E+02 0.0023 24.0 3.8 9 1-9 22-30 (85)
24 PF04342 DUF486: Protein of un 25.2 72 0.0016 26.4 2.8 41 4-47 64-104 (108)
25 cd03508 Delta4-sphingolipid-FA 25.2 31 0.00067 32.2 0.7 38 164-201 63-109 (289)
26 COG1398 OLE1 Fatty-acid desatu 24.7 49 0.0011 31.5 2.0 36 164-199 66-110 (289)
27 COG3402 Uncharacterized conser 24.7 1.3E+02 0.0029 26.5 4.5 28 4-33 16-43 (161)
28 PF13986 DUF4224: Domain of un 22.3 40 0.00087 23.5 0.7 19 229-247 8-26 (47)
29 KOG0872|consensus 21.7 30 0.00064 33.2 -0.1 33 186-219 228-260 (312)
30 PRK09877 2,3-diketo-L-gulonate 20.5 4.2E+02 0.009 22.0 6.6 27 5-31 2-28 (157)
No 1
>KOG3011|consensus
Probab=100.00 E-value=8.4e-89 Score=612.02 Aligned_cols=216 Identities=44% Similarity=0.783 Sum_probs=210.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhccceeeEEeeecCCCCCccccchHhhhhhh
Q psy5295 2 YLGKRIQEFISVTLCIILMLVNTYFIGSRIRLENITTLLISAVVGILTADFASGFVHWCADTWGSTEVPLIGKTLIRSFR 81 (248)
Q Consensus 2 ~~~kR~qE~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~g~l~ADf~SGlvHW~~Dt~Gs~~tPi~G~~fIr~Fr 81 (248)
|++||+||. |+.|++.++..++..++.+.+..+++|+++||++|||+||||||++|||||++||++|++|+| ||
T Consensus 77 s~~~~~~~~-----c~~lf~~~~~~ii~~~~s~~~~~~~La~~aG~i~AD~~SGl~HWaaD~~Gsv~tP~vG~~f~r-fr 150 (293)
T KOG3011|consen 77 THRLWVAAG-----CTTLFVSFAKSIIGGFGSHLWLEPALAAYAGYITADLGSGVYHWAADNYGSVSTPWVGRQFER-FQ 150 (293)
T ss_pred CchHHHHhh-----hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhcceeEeeccccCccccchhHHHHHH-HH
Confidence 689999999 899999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hcCCCCCcchhhhhhhccCCeeehhhhhHHHHHHHHhcCChHHHhhhhhHHHHHHHHHHHHHHhcccccCCCCccccccc
Q psy5295 82 EHHVDPTSITRHDFVETNGDNFLVTIPFLGRMTYQFLTMNEQQIKQNFNLYCFILLLAIFVAFTNQCHDVSSSSFDITFY 161 (248)
Q Consensus 82 eHH~~P~aITr~dFietngdn~~~~i~~l~~~~~~f~~~~~~~~~~~~~~~~f~~~la~~v~~tnq~~~~~~~~~~~~f~ 161 (248)
|||+|||+||||||+|+ +++.++++.|.+++++.+.+.++|++|+++|++||+||||
T Consensus 151 eHH~dP~tITr~~f~~~---------~~ll~~a~~f~v~~~d~~~q~~~~h~fV~~~~i~v~~tnQ-------------- 207 (293)
T KOG3011|consen 151 EHHKDPWTITRRQFANN---------LHLLARAYTFIVLPLDLAFQDPVFHGFVFLFAICVLFTNQ-------------- 207 (293)
T ss_pred hccCCcceeeHHHHhhh---------hHHHHHhheeEecCHHHHhhcccHHHHHHHHHHHHHHHHH--------------
Confidence 99999999999999984 6777889999999999999999999999999999999999
Q ss_pred cceeecccCCCCCcHHHHHHHhCccccCCccccccCCCCCCCceeeecccchhhhhhhcchHHHHHHHHHHhcCCCCccc
Q psy5295 162 FQIHKWSHTYYSLPRWVLFLQDCHLILPRRHHRYHHVAPHETYYCITTGWLNWPLEQIRFWPHLESVVTFVTGYKPRTDD 241 (248)
Q Consensus 162 ~~~HkWsHt~~~lP~~V~~LQ~~glllsr~hH~~HH~aPh~~~YCI~tGw~N~~Ld~i~fw~~lE~~i~~~tG~~PR~dd 241 (248)
||||||||+++|+||.+|||+|||+||+||++||++|||+||||||||||+|||+++|||+||++|+.+||+|||.||
T Consensus 208 --iHkWsHTy~gLP~wVv~LQd~hlilpRkhH~iHH~aPh~~yyCI~tGw~N~~Le~~~f~~~~E~vi~~~tG~rPRe~~ 285 (293)
T KOG3011|consen 208 --IHKWSHTYSGLPPWVVLLQDMHLILPRKHHRIHHVAPHNTYYCIVSGWWNWVLDESNFFKAMEMVLYFQTGVRPREPN 285 (293)
T ss_pred --HHHHHhhhccCchHHHHHhhcceecccccccccccCccccceEEeechhhchHHHHHHHHHHHHHHHHhhCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcC
Q psy5295 242 LKWTKKM 248 (248)
Q Consensus 242 ~~w~~k~ 248 (248)
+||+||.
T Consensus 286 ~~w~~kl 292 (293)
T KOG3011|consen 286 LKWAEKL 292 (293)
T ss_pred hhhHhhc
Confidence 9999984
No 2
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=100.00 E-value=1.4e-84 Score=560.68 Aligned_cols=178 Identities=63% Similarity=1.139 Sum_probs=173.7
Q ss_pred HHHhhccceeeEEeeecCCCCCccccchHhhhhhhhcCCCCCcchhhhhhhccCCeeehhhhhHHHHHHHHhcCChHHHh
Q psy5295 47 ILTADFASGFVHWCADTWGSTEVPLIGKTLIRSFREHHVDPTSITRHDFVETNGDNFLVTIPFLGRMTYQFLTMNEQQIK 126 (248)
Q Consensus 47 ~l~ADf~SGlvHW~~Dt~Gs~~tPi~G~~fIr~FreHH~~P~aITr~dFietngdn~~~~i~~l~~~~~~f~~~~~~~~~ 126 (248)
|++|||+||||||++|||||++||++|+ |||+|||||+||++||||||+|||||||++++|+++.+.+.+...+|+++.
T Consensus 1 ~~~ADf~SGvvHW~~D~~Gs~~tpi~G~-~I~~Fr~HH~~P~~itr~dfie~n~d~~~~~~~~l~~~~~~~~~~~~~~~~ 79 (178)
T PF10520_consen 1 YLLADFISGVVHWAADNWGSPDTPIIGK-FIRPFREHHVDPTAITRHDFIETNGDNCLVSAPVLALMAAAFAWNSPSAIF 79 (178)
T ss_pred CeeehhhcceeEEEeccCCCCccchhhH-HhHHHHHcccCHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCChHhhh
Confidence 6899999999999999999999999999 899999999999999999999999999999999999999888888888888
Q ss_pred hhhhHHHHHHHHHHHHHHhcccccCCCCccccccccceeecccCCCCCcHHHHHHHhCccccCCccccccCCCCCCCcee
Q psy5295 127 QNFNLYCFILLLAIFVAFTNQCHDVSSSSFDITFYFQIHKWSHTYYSLPRWVLFLQDCHLILPRRHHRYHHVAPHETYYC 206 (248)
Q Consensus 127 ~~~~~~~f~~~la~~v~~tnq~~~~~~~~~~~~f~~~~HkWsHt~~~lP~~V~~LQ~~glllsr~hH~~HH~aPh~~~YC 206 (248)
..+++++|++++++++++||| ||||||+++++|+||++|||+||||||+||++||++|||+|||
T Consensus 80 ~~~~~~~f~~~~~~~v~~tnq----------------~HkWsH~~~~~P~~V~~LQ~~gillsr~~H~~HH~aPh~~~YC 143 (178)
T PF10520_consen 80 YAYGWHCFLFSFAFFVAFTNQ----------------FHKWSHTYKSLPPWVRFLQDAGILLSRKHHRIHHVAPHDTNYC 143 (178)
T ss_pred hhhHHHHHHHHHHHHHHHHHH----------------HHHHHcCCCCCCHHHHHHHHCCcccCchhhhccccCcccCCeE
Confidence 889999999999999999999 9999999878999999999999999999999999999999999
Q ss_pred eecccchhhhhhhcchHHHHHHHHHHhcCCCCccc
Q psy5295 207 ITTGWLNWPLEQIRFWPHLESVVTFVTGYKPRTDD 241 (248)
Q Consensus 207 I~tGw~N~~Ld~i~fw~~lE~~i~~~tG~~PR~dd 241 (248)
|||||+||+||+++|||+||++|+++||+|||+||
T Consensus 144 I~tGw~N~~Ld~~~f~~~lE~~i~~~tG~~PR~~d 178 (178)
T PF10520_consen 144 ITTGWLNPPLDKIRFWRRLERVITFLTGVKPRADD 178 (178)
T ss_pred eecccchHHHHHhhHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999998
No 3
>PLN02434 fatty acid hydroxylase
Probab=96.52 E-value=0.0025 Score=58.11 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=36.0
Q ss_pred eeecccCCCCCcHHHHHHHhCccccCCccccccCCCCCCCceeeecccchhh
Q psy5295 164 IHKWSHTYYSLPRWVLFLQDCHLILPRRHHRYHHVAPHETYYCITTGWLNWP 215 (248)
Q Consensus 164 ~HkWsHt~~~lP~~V~~LQ~~glllsr~hH~~HH~aPh~~~YCI~tGw~N~~ 215 (248)
+|-..|..+..+++.+.|. ++|..||-...|.+|-|||.+||.+
T Consensus 180 ~Hy~lH~~~p~~~~~r~lk--------r~H~~HHfk~~~~~fGVTs~~wD~v 223 (237)
T PLN02434 180 THYFLHHGQPSTDVLRNLK--------KYHLNHHFRDQDKGFGITSSLWDRV 223 (237)
T ss_pred HHHHHHhcCcchHHHHHHH--------HHHHHHcCCCCCCCCCcCchHHHHh
Confidence 8999997755577777775 5789999989999999998877765
No 4
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=94.62 E-value=0.061 Score=48.98 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=28.4
Q ss_pred cccCCccccccCCCC-CCCceeeecccchhhhh
Q psy5295 186 LILPRRHHRYHHVAP-HETYYCITTGWLNWPLE 217 (248)
Q Consensus 186 lllsr~hH~~HH~aP-h~~~YCI~tGw~N~~Ld 217 (248)
++.+|++|+.||..- +|+||-.+.-+||.+..
T Consensus 200 v~~~p~~H~lHH~~~~~~~Nyg~~~~~WDrlFG 232 (271)
T COG3000 200 VFNTPRHHRLHHSKDPYDKNYGVTLTFWDRLFG 232 (271)
T ss_pred eecCchHHHHhccCCCCCCcchhhhHHHHHHcc
Confidence 788999999999987 78999999888888766
No 5
>PLN02869 fatty aldehyde decarbonylase
Probab=86.69 E-value=0.33 Score=49.99 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=33.6
Q ss_pred cccCCccccccCCCCCCCceeeecccchhhhhhh--cchHHHHHHHH
Q psy5295 186 LILPRRHHRYHHVAPHETYYCITTGWLNWPLEQI--RFWPHLESVVT 230 (248)
Q Consensus 186 lllsr~hH~~HH~aPh~~~YCI~tGw~N~~Ld~i--~fw~~lE~~i~ 230 (248)
++..|++|..||. -+++|||....+||.+..-. +-+..-|+..+
T Consensus 241 ll~TPsfHdlHHs-~fd~NYGlfF~~WDrLFGT~d~~s~~l~e~~~~ 286 (620)
T PLN02869 241 LMYTPSYHSLHHT-QFRTNYSLFMPIYDYIYGTMDKSSDTLYEKSLK 286 (620)
T ss_pred eecCchHHhHHhc-cCCcCcccchHHHHhccCCCCCCchhHHHHhhc
Confidence 4678999999999 58999999999999876543 34555554443
No 6
>KOG0539|consensus
Probab=65.70 E-value=4.2 Score=37.43 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=36.4
Q ss_pred cccccccceeecccCCCCCc-HHHHHHHhCccccCCccccccCCCCCCCceeeecccchhh
Q psy5295 156 FDITFYFQIHKWSHTYYSLP-RWVLFLQDCHLILPRRHHRYHHVAPHETYYCITTGWLNWP 215 (248)
Q Consensus 156 ~~~~f~~~~HkWsHt~~~lP-~~V~~LQ~~glllsr~hH~~HH~aPh~~~YCI~tGw~N~~ 215 (248)
++-+++-.-|..-|-.+.++ +..+-|. +.|..||-.-.+.-|-|+|-.||+.
T Consensus 174 ~GYV~YDmtHYyLHhg~p~~~~~~~~lK--------~yHl~HHfk~q~~GfGItS~lWD~V 226 (240)
T KOG0539|consen 174 LGYVCYDMTHYYLHHGSPPKRPYLKHLK--------KYHLNHHFKHQDLGFGITSSLWDYV 226 (240)
T ss_pred hhhhhhhhhhhhhhcCCCCCchHHHHHH--------HHHhhhhhhccccCccccHHHHHHH
Confidence 33334444898888552222 5556664 4577999999999999999988875
No 7
>PF13320 DUF4091: Domain of unknown function (DUF4091)
Probab=63.97 E-value=5.9 Score=29.58 Aligned_cols=33 Identities=39% Similarity=0.751 Sum_probs=24.9
Q ss_pred cceeeEEeeecCCCCCccccchHhhhhhhhcCCCCCcchhhhhhhccCCeeeh
Q psy5295 53 ASGFVHWCADTWGSTEVPLIGKTLIRSFREHHVDPTSITRHDFVETNGDNFLV 105 (248)
Q Consensus 53 ~SGlvHW~~Dt~Gs~~tPi~G~~fIr~FreHH~~P~aITr~dFietngdn~~~ 105 (248)
+.|++||+.|.|-+ +|.+-++.+-. .+||-+++
T Consensus 3 ~~G~L~W~~~~w~~-------------------dP~~d~~~~~~-~~GD~~lv 35 (68)
T PF13320_consen 3 FDGFLRWAYNFWNE-------------------DPWEDTRFRGF-PAGDGFLV 35 (68)
T ss_pred CCeEEEeccccccc-------------------CcccccCcCcC-CCCCeEEE
Confidence 57999999999932 77777765543 69998765
No 8
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=44.20 E-value=38 Score=23.87 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHhhcc
Q psy5295 35 NITTLLISAVVGILTADFA 53 (248)
Q Consensus 35 ~~~~~~~~~~~g~l~ADf~ 53 (248)
+...+++++.+||+.|.|.
T Consensus 29 ~ll~vllsIalGylvs~Ff 47 (48)
T PF06612_consen 29 RLLIVLLSIALGYLVSSFF 47 (48)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 5567889999999999885
No 9
>PF10625 UspB: Universal stress protein B (UspB); InterPro: IPR019598 Universal stress protein B (UspB) in Escherichia coli is a 14kDa protein which is predicted to be an integral membrane protein. Over expression of UspB results in cell death in stationary phase, and mutants of UspB are sensitive to ethanol exposure during stationary phase [].
Probab=42.58 E-value=89 Score=25.84 Aligned_cols=70 Identities=23% Similarity=0.309 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHhhccceeeEEeeecCCCCCccccchHhhhhhh-------h
Q psy5295 12 SVTLCIILMLVNTYFIGSRIRLENITTLLI--SAVVGILTADFASGFVHWCADTWGSTEVPLIGKTLIRSFR-------E 82 (248)
Q Consensus 12 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~--~~~~g~l~ADf~SGlvHW~~Dt~Gs~~tPi~G~~fIr~Fr-------e 82 (248)
...+..+|+++++..+++|+..-+....++ +=.+-|=--| +.|+. -+.|++ +|| +|=|| .
T Consensus 4 ~d~i~~Al~~v~~vNm~RY~SsLR~LL~imR~~dPLLYQ~VD-G~GFF----tthG~~-----sKQ-~rL~~YI~~~~Y~ 72 (107)
T PF10625_consen 4 GDAIFWALCIVCIVNMARYFSSLRALLYIMREADPLLYQQVD-GNGFF----TTHGNV-----SKQ-VRLFHYIRSQEYL 72 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHhcc-CCCce----ecCCCc-----chh-hHHHHHHHHHHHH
Confidence 345677888889999999987654422221 2234565566 67764 456666 566 66664 4
Q ss_pred cCCCCCcchh
Q psy5295 83 HHVDPTSITR 92 (248)
Q Consensus 83 HH~~P~aITr 92 (248)
||.||.-|.|
T Consensus 73 ~HhD~~fi~r 82 (107)
T PF10625_consen 73 HHHDPEFIRR 82 (107)
T ss_pred hccCHHHHHH
Confidence 8889998866
No 10
>TIGR00680 kdpA K+-transporting ATPase, KdpA. Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit PubMed:9858692].
Probab=36.75 E-value=24 Score=36.38 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHhcCCCCccchhhhh
Q psy5295 221 FWPHLESVVTFVTGYKPRTDDLKWTK 246 (248)
Q Consensus 221 fw~~lE~~i~~~tG~~PR~dd~~w~~ 246 (248)
+.+.+|+.+|++.|+.|+ ++|+|.+
T Consensus 41 ~~~pvE~~iyr~~Gvd~~-~em~Wk~ 65 (563)
T TIGR00680 41 IAGPLERVIFAGSGVTKH-PEMGWTQ 65 (563)
T ss_pred hhhhHHHHHHHHHCCCCc-ccCCHHH
Confidence 344799999999999996 6799965
No 11
>KOG0873|consensus
Probab=35.43 E-value=21 Score=33.91 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=28.5
Q ss_pred CccccccCCCCCCCceeeecccchhhhhhhcchHHH
Q psy5295 190 RRHHRYHHVAPHETYYCITTGWLNWPLEQIRFWPHL 225 (248)
Q Consensus 190 r~hH~~HH~aPh~~~YCI~tGw~N~~Ld~i~fw~~l 225 (248)
-++|--||... .+|||-+-||||+++.--+-.|..
T Consensus 229 a~~HD~HH~~f-~~n~~~~f~~~D~i~GTd~~~~~~ 263 (283)
T KOG0873|consen 229 AEHHDYHHLVF-IGNFASVFGYLDRIHGTDSTYRAL 263 (283)
T ss_pred Ccccchhhhhc-cccccchhHHHHHHhccCccHhhh
Confidence 47999999975 999999999999999865554443
No 12
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=35.00 E-value=2e+02 Score=22.95 Aligned_cols=44 Identities=14% Similarity=0.471 Sum_probs=24.0
Q ss_pred cchHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy5295 4 GKRIQEFISVT----LCIILMLVNTYFIGSRIRLENITTLLISAVVGILT 49 (248)
Q Consensus 4 ~kR~qE~~~~~----~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~g~l~ 49 (248)
.-|++|.+-+. .|++.++.++.+|. .....++..++|++++...
T Consensus 33 ~~kL~ELlFF~nIA~FcI~tvlfsFvfLs--~kl~t~~Af~~Ai~~Sl~~ 80 (90)
T PF11674_consen 33 SAKLKELLFFANIAFFCIFTVLFSFVFLS--LKLNTFWAFPLAILISLAI 80 (90)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHH
Confidence 45899987662 33333334444433 3344456666777766543
No 13
>KOG1362|consensus
Probab=33.76 E-value=18 Score=37.32 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=25.2
Q ss_pred HHHHHHHHHHH-HHHhhccceeeEEeeecC
Q psy5295 36 ITTLLISAVVG-ILTADFASGFVHWCADTW 64 (248)
Q Consensus 36 ~~~~~~~~~~g-~l~ADf~SGlvHW~~Dt~ 64 (248)
++..+++.++| |+.|..+.+++++++||+
T Consensus 506 y~V~lla~iig~ylIa~~f~~v~~m~Vdtl 535 (577)
T KOG1362|consen 506 YVVPLLAFIIGAYLIAHIFFSVLEMCVDTL 535 (577)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567777777 999999999999999998
No 14
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=33.47 E-value=3.6e+02 Score=24.30 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=18.5
Q ss_pred CCcHHHHHHHhCccccCCccccccCCCCCCC
Q psy5295 173 SLPRWVLFLQDCHLILPRRHHRYHHVAPHET 203 (248)
Q Consensus 173 ~lP~~V~~LQ~~glllsr~hH~~HH~aPh~~ 203 (248)
+.|+|+.+|-=.++ . -|..||..|.--
T Consensus 191 ~~~~~~~~l~c~~f--g--yH~eHH~fP~~P 217 (225)
T cd03513 191 RLSPVLSFLTCYHF--G--YHHEHHLSPSTP 217 (225)
T ss_pred CccHHHHHHHHHhc--C--cchhhccCCCCC
Confidence 45888888652222 1 799999998743
No 15
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=30.72 E-value=69 Score=29.59 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=15.0
Q ss_pred cCCCCC-cchhhhhhhccCCee
Q psy5295 83 HHVDPT-SITRHDFVETNGDNF 103 (248)
Q Consensus 83 HH~~P~-aITr~dFietngdn~ 103 (248)
+=..|. .|.++|.||.|.+++
T Consensus 107 nt~k~~~~~~kk~~CEen~~K~ 128 (227)
T PF05399_consen 107 NTSKSQSEIFKKEICEENNNKM 128 (227)
T ss_pred cCCCCcccccchhhhhcCccch
Confidence 334444 778899999887664
No 16
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=30.28 E-value=28 Score=25.23 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=16.5
Q ss_pred CCccccchHhhhhhhhcCCCCC
Q psy5295 67 TEVPLIGKTLIRSFREHHVDPT 88 (248)
Q Consensus 67 ~~tPi~G~~fIr~FreHH~~P~ 88 (248)
.++|++|+. |+++|||-.-|.
T Consensus 6 ~~h~~~g~~-I~~w~~~r~i~~ 26 (71)
T PF04304_consen 6 LNHRLFGPY-IRNWEEHRGIPR 26 (71)
T ss_pred HcCchhHHH-HHHHHHCCCcCH
Confidence 368999995 999999865443
No 17
>PLN02220 delta-9 acyl-lipid desaturase
Probab=29.86 E-value=55 Score=31.00 Aligned_cols=35 Identities=29% Similarity=0.664 Sum_probs=23.7
Q ss_pred eee-cccCCCCCcHHHHHHH-hCcccc---CC----ccccccCC
Q psy5295 164 IHK-WSHTYYSLPRWVLFLQ-DCHLIL---PR----RHHRYHHV 198 (248)
Q Consensus 164 ~Hk-WsHt~~~lP~~V~~LQ-~~glll---sr----~hH~~HH~ 198 (248)
.|+ |||.-++.|++++.+= =+|-+. |+ +.||.||.
T Consensus 76 yHRl~sHrsfka~~~l~~~la~~g~~a~Qgs~~~Wv~~HR~HH~ 119 (299)
T PLN02220 76 YHRNLAHRSFKLPKWLEYPFAYSALFALQGDPIDWVSTHRFHHQ 119 (299)
T ss_pred HHHHHHhhcCcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 776 8997778888887533 333332 22 68999997
No 18
>TIGR02327 int_mem_ywzB conserved hypothetical integral membrane protein. Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; Pfam model pfam06612 describes the same family as Protein of unknown function DUF1146.
Probab=29.06 E-value=1.7e+02 Score=22.09 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHhhccceeeEE
Q psy5295 35 NITTLLISAVVGILTADFASGFVHW 59 (248)
Q Consensus 35 ~~~~~~~~~~~g~l~ADf~SGlvHW 59 (248)
+...+++|+.+||+.|.|.-.+..|
T Consensus 36 ~ll~vllaIalGylvs~FfL~~i~~ 60 (68)
T TIGR02327 36 RVLVVLIAIALGYTVSHFFLELIQL 60 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999987655433
No 19
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.99 E-value=1.4e+02 Score=24.81 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy5295 4 GKRIQEFISVTLCIILMLVNTYFIGSRIRLENITTLLISAVVGI 47 (248)
Q Consensus 4 ~kR~qE~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~g~ 47 (248)
-|-+||.|...+++. .+.+++-.-+.+.+++..++-+.+.|
T Consensus 71 LK~mQEVItL~iFv~---Fsvfyl~epl~~~~l~a~~~i~gav~ 111 (116)
T COG3169 71 LKTMQEVITLAIFVP---FSVFYLKEPLRWNYLWAFLLILGAVY 111 (116)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 378899998876654 35677766677776665444444433
No 20
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=28.63 E-value=36 Score=35.12 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHhcCCCCccchhhhh
Q psy5295 222 WPHLESVVTFVTGYKPRTDDLKWTK 246 (248)
Q Consensus 222 w~~lE~~i~~~tG~~PR~dd~~w~~ 246 (248)
++.+|+.+|++.|+.|+. ||+|.+
T Consensus 39 ~~~vE~~~yr~~gvd~~~-~m~wk~ 62 (559)
T PRK05482 39 LGPVERLLYRLLGVDPRE-EMSWKQ 62 (559)
T ss_pred cchHHHHHHHHhcCCCcc-cCCHHH
Confidence 567999999999999986 488964
No 21
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=28.43 E-value=21 Score=29.36 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=21.4
Q ss_pred eeecccCC-CCCcHHHHHHHhCcccc---C----CccccccCC
Q psy5295 164 IHKWSHTY-YSLPRWVLFLQDCHLIL---P----RRHHRYHHV 198 (248)
Q Consensus 164 ~HkWsHt~-~~lP~~V~~LQ~~glll---s----r~hH~~HH~ 198 (248)
.|+-+|.. ++.+++=+++......+ | |..|..||.
T Consensus 24 ~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~ 66 (257)
T PF00487_consen 24 AHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHH 66 (257)
T ss_pred HHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeecccc
Confidence 89999975 34555544444433322 1 678888986
No 22
>PF09900 DUF2127: Predicted membrane protein (DUF2127); InterPro: IPR021125 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=27.30 E-value=2e+02 Score=24.14 Aligned_cols=39 Identities=26% Similarity=0.287 Sum_probs=32.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy5295 3 LGKRIQEFISVTLCIILMLVNTYFIGSRIRLENITTLLI 41 (248)
Q Consensus 3 ~~kR~qE~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 41 (248)
.+||--|+.++++..+.+-.-+|.+.+.+..-.....++
T Consensus 90 ~~k~Wae~lav~~~~~fiP~Eiyel~~~~s~~~~~~l~~ 128 (141)
T PF09900_consen 90 RGKRWAEWLAVISTGIFIPYEIYELIRHPSWLKILVLLV 128 (141)
T ss_pred HcCchHhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 479999999999999999999999998886665554444
No 23
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=26.33 E-value=1.1e+02 Score=24.04 Aligned_cols=9 Identities=11% Similarity=0.228 Sum_probs=5.3
Q ss_pred CCccchHHH
Q psy5295 1 MYLGKRIQE 9 (248)
Q Consensus 1 ~~~~kR~qE 9 (248)
|||+||+.=
T Consensus 22 Lsp~~R~~v 30 (85)
T PF13150_consen 22 LSPKQRLRV 30 (85)
T ss_pred CCHHHHHHH
Confidence 466666643
No 24
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=25.20 E-value=72 Score=26.44 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=26.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy5295 4 GKRIQEFISVTLCIILMLVNTYFIGSRIRLENITTLLISAVVGI 47 (248)
Q Consensus 4 ~kR~qE~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~g~ 47 (248)
=|-+||.|++.+++... .+++-..+.+.+.+..+.-+.+.|
T Consensus 64 LKi~QEvitL~vF~~Fs---v~~l~E~l~~n~l~af~~i~~av~ 104 (108)
T PF04342_consen 64 LKIIQEVITLVVFAPFS---VFYLGEPLKWNYLWAFLCILGAVY 104 (108)
T ss_pred HHHHHHHHhhheeHHHH---HHHhCCCccHHHHHHHHHHHHhhh
Confidence 37799999988776553 356667777776655444444333
No 25
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=25.20 E-value=31 Score=32.19 Aligned_cols=38 Identities=26% Similarity=0.445 Sum_probs=22.8
Q ss_pred eeecccCC-CCCcHHHHHHHh-Cccc------cC-CccccccCCCCC
Q psy5295 164 IHKWSHTY-YSLPRWVLFLQD-CHLI------LP-RRHHRYHHVAPH 201 (248)
Q Consensus 164 ~HkWsHt~-~~lP~~V~~LQ~-~gll------ls-r~hH~~HH~aPh 201 (248)
.|+-+|.. ++.|++=+++.. +++. .+ |.+|..||+.+-
T Consensus 63 ~Hd~~H~~~f~~~~~N~~~g~~~~~~~g~p~~~~~r~~H~~HH~~~n 109 (289)
T cd03508 63 IHEISHNLAFGKPLWNRLFGIFANLPIGVPYSISFKKYHLEHHRYLG 109 (289)
T ss_pred HHHhHHHhhcCChHHHHHHHHHHHHHhcCChhhHHHHHHHHhccCCC
Confidence 69999965 455555444433 2221 12 568999999643
No 26
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=24.75 E-value=49 Score=31.55 Aligned_cols=36 Identities=28% Similarity=0.670 Sum_probs=23.3
Q ss_pred eee-cccCCCCCcHHHHHHHhC-ccc---cCC----ccccccCCC
Q psy5295 164 IHK-WSHTYYSLPRWVLFLQDC-HLI---LPR----RHHRYHHVA 199 (248)
Q Consensus 164 ~Hk-WsHt~~~lP~~V~~LQ~~-gll---lsr----~hH~~HH~a 199 (248)
+|+ |||..++.|++.++-=.. |-+ -|. .-||+||+-
T Consensus 66 ~HRl~sHRa~~~~k~Le~~la~~g~l~~~G~~~~W~~~HR~HHr~ 110 (289)
T COG1398 66 LHRLWSHRAFKAHKWLEYVLAFWGALTTQGPAIEWVGIHRKHHRK 110 (289)
T ss_pred hhhhhhhhhcccchHHHHHHHHHHHhhcCCCceeHHHHHHHhhcc
Confidence 887 899877888887653322 211 122 369999983
No 27
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=24.71 E-value=1.3e+02 Score=26.48 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=16.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5295 4 GKRIQEFISVTLCIILMLVNTYFIGSRIRL 33 (248)
Q Consensus 4 ~kR~qE~~~~~~~~~l~~~~~~~l~~~~~~ 33 (248)
--|+||++.+.+|.++ .-.+.++.++..
T Consensus 16 vw~~~~~i~~~l~Ll~--av~~~~~~~~~~ 43 (161)
T COG3402 16 VWRVQEWIPIALVLLI--AVAAGVLLYFVG 43 (161)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHheec
Confidence 3478999988876433 333444555544
No 28
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=22.32 E-value=40 Score=23.48 Aligned_cols=19 Identities=26% Similarity=0.784 Sum_probs=16.8
Q ss_pred HHHHhcCCCCccchhhhhc
Q psy5295 229 VTFVTGYKPRTDDLKWTKK 247 (248)
Q Consensus 229 i~~~tG~~PR~dd~~w~~k 247 (248)
+..+||+|-++...+|-++
T Consensus 8 l~elTG~k~~~~Q~~~L~~ 26 (47)
T PF13986_consen 8 LQELTGYKRPSKQIRWLRR 26 (47)
T ss_pred HHHHHCCCCHHHHHHHHHH
Confidence 5789999999999999775
No 29
>KOG0872|consensus
Probab=21.66 E-value=30 Score=33.18 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=27.9
Q ss_pred cccCCccccccCCCCCCCceeeecccchhhhhhh
Q psy5295 186 LILPRRHHRYHHVAPHETYYCITTGWLNWPLEQI 219 (248)
Q Consensus 186 lllsr~hH~~HH~aPh~~~YCI~tGw~N~~Ld~i 219 (248)
.+-.+.||.+||.- +|.||--.|=|||+.-...
T Consensus 228 ~ingaahHtvHH~~-f~~NYG~~tilwDrmfgSf 260 (312)
T KOG0872|consen 228 PINGAAHHTVHHTY-FDYNYGQYTILWDRMFGSF 260 (312)
T ss_pred ccccccccceeeee-EecCCCcEEEeHHhccCcc
Confidence 35678999999995 9999999999999876553
No 30
>PRK09877 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional
Probab=20.49 E-value=4.2e+02 Score=21.97 Aligned_cols=27 Identities=30% Similarity=0.073 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5295 5 KRIQEFISVTLCIILMLVNTYFIGSRI 31 (248)
Q Consensus 5 kR~qE~~~~~~~~~l~~~~~~~l~~~~ 31 (248)
||+.|+++..+.+.+.+..++..+.++
T Consensus 2 ~~~~~~i~~~~l~~m~~~v~~~Vv~Ry 28 (157)
T PRK09877 2 KRILEGILAINIAVLSCIVFINIILRY 28 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999888888887555
Done!