Query psy5295
Match_columns 248
No_of_seqs 107 out of 113
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 22:54:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nk4_C ZONA pellucida 3; ferti 27.6 19 0.00064 22.3 0.7 12 186-197 19-30 (30)
2 4esb_A Transcriptional regulat 19.9 51 0.0017 25.0 2.1 69 173-243 44-112 (115)
3 2p06_A Hypothetical protein AF 19.2 48 0.0016 25.7 1.7 40 191-240 4-53 (114)
4 2pq4_B Periplasmic nitrate red 17.8 24 0.00082 22.4 -0.2 11 89-99 2-12 (35)
5 4esf_A PADR-like transcription 13.6 98 0.0033 23.5 2.3 69 173-243 46-114 (117)
6 3llq_A Aquaporin Z 2; aquapori 13.0 48 0.0016 29.3 0.3 29 190-218 8-36 (256)
7 1zhv_A Hypothetical protein AT 12.8 62 0.0021 25.9 0.9 38 160-197 94-134 (134)
8 1zch_A Hypothetical oxidoreduc 12.3 84 0.0029 26.5 1.7 24 173-197 232-255 (255)
9 4ao9_A Beta-phenylalanine amin 11.9 2.2E+02 0.0074 26.6 4.5 52 176-240 403-454 (454)
10 2d10_E Ezrin-radixin-moesin bi 11.8 55 0.0019 20.2 0.3 15 233-247 7-21 (28)
No 1
>3nk4_C ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_C*
Probab=27.60 E-value=19 Score=22.27 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=8.7
Q ss_pred cccCCccccccC
Q psy5295 186 LILPRRHHRYHH 197 (248)
Q Consensus 186 lllsr~hH~~HH 197 (248)
++||..||..||
T Consensus 19 vllsadhhhhhh 30 (30)
T 3nk4_C 19 VLLSADHHHHHH 30 (30)
T ss_dssp EEBCSCTTCCCC
T ss_pred EEecccccccCC
Confidence 577888887666
No 2
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=19.87 E-value=51 Score=24.98 Aligned_cols=69 Identities=22% Similarity=0.207 Sum_probs=47.7
Q ss_pred CCcHHHHHHHhCccccCCccccccCCCCCCCceeeecccchhhhhhhcchHHHHHHHHHHhcCCCCccchh
Q psy5295 173 SLPRWVLFLQDCHLILPRRHHRYHHVAPHETYYCITTGWLNWPLEQIRFWPHLESVVTFVTGYKPRTDDLK 243 (248)
Q Consensus 173 ~lP~~V~~LQ~~glllsr~hH~~HH~aPh~~~YCI~tGw~N~~Ld~i~fw~~lE~~i~~~tG~~PR~dd~~ 243 (248)
.+-+.++.|++.|+|-+...-. -..|--++|.||--=-..+-+...-|+.+...+....|..++.+...
T Consensus 44 tlY~~L~rLe~~GlI~~~~~~~--~~g~~rk~Y~LT~~G~~~l~~~~~~~~~~~~~i~~il~~~~~~~~~~ 112 (115)
T 4esb_A 44 SIYPLLLRMQKEKLIEGTLKAS--SLGPKRKYYHITDKGLEQLEEFKQSWGMVSTTVNNLLQGESRWSHPQ 112 (115)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEC--TTSCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHTTCC-------
T ss_pred hHHHHHHHHHHCCCeEEEeeec--CCCCCcEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcc
Confidence 5778999999999998875321 12355678998853345666678889999999999999988876544
No 3
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=19.23 E-value=48 Score=25.73 Aligned_cols=40 Identities=25% Similarity=0.488 Sum_probs=14.9
Q ss_pred ccccccCCCCCCCceeeecccchhhhhhhcchHHHHHHHHHH----------hcCCCCcc
Q psy5295 191 RHHRYHHVAPHETYYCITTGWLNWPLEQIRFWPHLESVVTFV----------TGYKPRTD 240 (248)
Q Consensus 191 ~hH~~HH~aPh~~~YCI~tGw~N~~Ld~i~fw~~lE~~i~~~----------tG~~PR~d 240 (248)
.||..||.+--++-| .....+||..|+.+... -|-.||.|
T Consensus 4 shhhhhhssgrenly----------fqgmdyfrlaekflremhakymkrvsrpgntprpw 53 (114)
T 2p06_A 4 SHHHHHHSSGRENLY----------FQGMDYFRLAEKFLREMHAKYMKRVSRPGNTPRPW 53 (114)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHHHHHHTSTTCCSCHH
T ss_pred ccccccccccccchh----------ccchhHHHHHHHHHHHHHHHHHHHccCCCCCCCCc
Confidence 567778876555444 44456788888776542 47777765
No 4
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=17.80 E-value=24 Score=22.43 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=8.9
Q ss_pred cchhhhhhhcc
Q psy5295 89 SITRHDFVETN 99 (248)
Q Consensus 89 aITr~dFietn 99 (248)
.++||||+..+
T Consensus 2 ~lsRR~FLK~~ 12 (35)
T 2pq4_B 2 KLSRRSFMKAN 12 (35)
T ss_dssp CCCSHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 48999999754
No 5
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=13.61 E-value=98 Score=23.49 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=46.4
Q ss_pred CCcHHHHHHHhCccccCCccccccCCCCCCCceeeecccchhhhhhhcchHHHHHHHHHHhcCCCCccchh
Q psy5295 173 SLPRWVLFLQDCHLILPRRHHRYHHVAPHETYYCITTGWLNWPLEQIRFWPHLESVVTFVTGYKPRTDDLK 243 (248)
Q Consensus 173 ~lP~~V~~LQ~~glllsr~hH~~HH~aPh~~~YCI~tGw~N~~Ld~i~fw~~lE~~i~~~tG~~PR~dd~~ 243 (248)
.+=+.++.|++.|+|-+...-. ...|--++|.||--=-..+-+...-|+.+...+..+.+...|.|.-.
T Consensus 46 tlY~~L~rLe~~GlI~~~~~~~--~~g~~rk~Y~LT~~G~~~l~~~~~~~~~~~~~i~~il~~~~~~~~~~ 114 (117)
T 4esf_A 46 TVYTILVRLEKKKLVNIEKKPS--DMGPPRKFYSLNEAGRQELELFWKKWDFVSSKINVLKSSNSRWSHPQ 114 (117)
T ss_dssp HHHHHHHHHHHTTCEEEEEEC-------CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHCCCEEEEeecC--CCCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcccccCcCCc
Confidence 5678899999999998875421 12355678999854446666678889999999999999888877543
No 6
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=12.96 E-value=48 Score=29.27 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=4.8
Q ss_pred CccccccCCCCCCCceeeecccchhhhhh
Q psy5295 190 RRHHRYHHVAPHETYYCITTGWLNWPLEQ 218 (248)
Q Consensus 190 r~hH~~HH~aPh~~~YCI~tGw~N~~Ld~ 218 (248)
.|||..||.--||+-|...+.++...+-+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~r~~laE 36 (256)
T 3llq_A 8 DKHHHHHHHHHHENLYFQSYVMGRKLLAE 36 (256)
T ss_dssp ---------------------CHHHHHHH
T ss_pred cccccccccccchhhhhhHHHHHHHHHHH
Confidence 35565555557999998887777666543
No 7
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=12.80 E-value=62 Score=25.94 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=27.9
Q ss_pred cccceeeccc--CC-CCCcHHHHHHHhCccccCCccccccC
Q psy5295 160 FYFQIHKWSH--TY-YSLPRWVLFLQDCHLILPRRHHRYHH 197 (248)
Q Consensus 160 f~~~~HkWsH--t~-~~lP~~V~~LQ~~glllsr~hH~~HH 197 (248)
|..+-+..-| -+ .++...+..|++.|-.+.-.||..||
T Consensus 94 f~iSty~tD~IlVp~~~~~~Ai~aL~~~~~~~~~~~~~~~~ 134 (134)
T 1zhv_A 94 FVVSTFDGDHLLVRSNDLEKTADLLANAGHSLLLEHHHHHH 134 (134)
T ss_dssp EEEECSSCEEEEEEGGGHHHHHHHHHHTTCEEECCCCCSCC
T ss_pred EEEEeccccEEEEeHHHHHHHHHHHHHcCceeeccccccCC
Confidence 3334444444 22 37799999999999999999987776
No 8
>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase; HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1
Probab=12.31 E-value=84 Score=26.53 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=16.0
Q ss_pred CCcHHHHHHHhCccccCCccccccC
Q psy5295 173 SLPRWVLFLQDCHLILPRRHHRYHH 197 (248)
Q Consensus 173 ~lP~~V~~LQ~~glllsr~hH~~HH 197 (248)
.+|....+|++.|+.+.+.|| .||
T Consensus 232 ~~~~~~~~l~~~gf~~~~~~~-~~~ 255 (255)
T 1zch_A 232 YYPHIREMLEKQGFKVEKHHH-HHH 255 (255)
T ss_dssp SCTTHHHHHHHTTCCCCC-------
T ss_pred ccHHHHHHHHHCCCCcccccc-cCC
Confidence 689999999999998765544 444
No 9
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=11.94 E-value=2.2e+02 Score=26.60 Aligned_cols=52 Identities=10% Similarity=0.133 Sum_probs=35.5
Q ss_pred HHHHHHHhCccccCCccccccCCCCCCCceeeecccchhhhhhhcchHHHHHHHHHHhcCCCCcc
Q psy5295 176 RWVLFLQDCHLILPRRHHRYHHVAPHETYYCITTGWLNWPLEQIRFWPHLESVVTFVTGYKPRTD 240 (248)
Q Consensus 176 ~~V~~LQ~~glllsr~hH~~HH~aPh~~~YCI~tGw~N~~Ld~i~fw~~lE~~i~~~tG~~PR~d 240 (248)
.+...|.+.||+++|... -++..--.+.=+|+ +-+.+|+++....+..||+|
T Consensus 403 ~~~~~ll~~Gv~~~p~~~-----------~~~s~~~T~~dId~--~l~al~~~l~~~~a~lPra~ 454 (454)
T 4ao9_A 403 LLFFHLLNEDIYSSPRGF-----------VVLSLPLTDADIDR--YVAAIGSFIGGHGALLPRAN 454 (454)
T ss_dssp HHHHHHHHTTEECCTTCE-----------EECCTTCCHHHHHH--HHHHHHHHHHHSGGGSCBCC
T ss_pred HHHHHHHHCCEEEcCCCC-----------EEEeCCCCHHHHHH--HHHHHHHHHHhccccCCCCC
Confidence 355667788999987432 11222223444554 67899999999999999996
No 10
>2d10_E Ezrin-radixin-moesin binding phosphoprotein 50; protein-peptide complex, cell adhesion; 2.50A {Mus musculus}
Probab=11.84 E-value=55 Score=20.21 Aligned_cols=15 Identities=27% Similarity=0.614 Sum_probs=11.5
Q ss_pred hcCCCCccchhhhhc
Q psy5295 233 TGYKPRTDDLKWTKK 247 (248)
Q Consensus 233 tG~~PR~dd~~w~~k 247 (248)
.-.+-|++.|+|.+|
T Consensus 7 kR~~krap~MDw~kk 21 (28)
T 2d10_E 7 KRSSKRAPQMDWSKK 21 (28)
T ss_pred ccccccCCcccHHHH
Confidence 345668899999887
Done!