RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5295
(248 letters)
>gnl|CDD|220795 pfam10520, Kua-UEV1_localn, Kua-ubiquitin conjugating enzyme hybrid
localisation domain. This domain is part of the
transcript of the fusion of two genes, the UEV1, an
enzymatically inactive variant of the E2
ubiquitin-conjugating enzymes that regulate
non-canonical elongation of ubiquitin chains, and Kua,
an otherwise unknown gene. UEV1A is a nuclear protein,
whereas both Kua and Kua-UEV localise to cytoplasmic
structures, indicating that the addition of a Kua domain
to UEV confers new biological properties. UEV1-Kua
carries the B domain with its characteristic double
histidine motif, and it is probably this domain which
determines the cytoplasmic localisation. It is
postulated that this hybrid transcript could
preferentially direct the variant polyubiquitination of
substrates closely associated with the cytoplasmic face
of the endoplasmic reticulum, possibly, although not
necessarily, in conjunction with membrane-bound
ubiquitin-conjugating enzymes.
Length = 178
Score = 268 bits (686), Expect = 6e-92
Identities = 114/195 (58%), Positives = 129/195 (66%), Gaps = 17/195 (8%)
Query: 47 ILTADFASGFVHWCADTWGSTEVPLIGKTLIRSFREHHVDPTSITRHDFVETNGDNFLVT 106
L ADF SG VHW ADTWGS + P++GK IR FREHHVDPT+ITRHDF+ETNGDN L +
Sbjct: 1 YLLADFGSGLVHWAADTWGSPDTPILGK-FIRPFREHHVDPTAITRHDFIETNGDNCLAS 59
Query: 107 IPFLGRMTYQFLTMNEQQIKQNFNLYCFILLLAIFVAFTNQCHDVSSSSFDITFYFQIHK 166
IP L + T + + + F+L AIFVA TNQ IHK
Sbjct: 60 IPVLAILAATLATNAPSALTYWYGWHVFLLTFAIFVALTNQ----------------IHK 103
Query: 167 WSHTYYSLPRWVLFLQDCHLILPRRHHRYHHVAPHETYYCITTGWLNWPLEQIRFWPHLE 226
WSHTY SLP V FLQD HLIL R+HHR HH APHETYYCITTGWLN PL++I FW LE
Sbjct: 104 WSHTYKSLPPLVRFLQDIHLILSRKHHRIHHRAPHETYYCITTGWLNPPLDRINFWRKLE 163
Query: 227 SVVTFVTGYKPRTDD 241
VVT +TG KPR DD
Sbjct: 164 MVVTGLTGVKPRADD 178
>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function. The PGG domain is
named for the highly conserved sequence motif found at
the startt of the domain. The function is not known.
Length = 114
Score = 29.4 bits (67), Expect = 0.75
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 10 FISVTLCIILMLVNTYFIGSRIRLENITTLLISAVVGILTADFASG 55
S+ I+L+ + F RL + TLL +++ ++ A FA+G
Sbjct: 66 VASLVAVILLLYIVPSFSRRLPRLLALLTLLWLSLLSLMVA-FAAG 110
>gnl|CDD|238579 cd01174, ribokinase, Ribokinase catalyses the phosphorylation of
ribose to ribose-5-phosphate using ATP. This reaction is
the first step in the ribose metabolism. It traps ribose
within the cell after uptake and also prepares the sugar
for use in the synthesis of nucleotides and histidine,
and for entry into the pentose phosphate pathway.
Ribokinase is dimeric in solution.
Length = 292
Score = 29.8 bits (68), Expect = 1.1
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 73 GKTLIRSFREHHVDPTSITR---------HDFVETNGDNFLVTIP 108
G L+ + RE +D + + V+ +G+N +V +P
Sbjct: 65 GDELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVVVP 109
>gnl|CDD|220990 pfam11124, Pho86, Inorganic phosphate transporter Pho86. Pho86p is
an ER protein which is produced in response to phosphate
starvation. It is essential for growth when phosphate
levels are limiting. Pho86p is also involved in the
regulation of Pho84p, a high-affinity phosphate
transporter which is localised to the endoplasmic
reticulum (ER) in low phosphate medium. When the level
of phosphate increases Pho84p is transported to the
vacuole. Pho86p is required for packaging of Pho84p in
to COPII vesicles.
Length = 296
Score = 29.7 bits (67), Expect = 1.3
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 115 YQFLTMNEQQIKQNFNLYCFILLLAIFVAFTNQCHDVSSSSFDIT 159
YQF N++ +Y +F + VS F I
Sbjct: 87 YQFFLKNKKDFIFQL-IYTLPSTSFVFTLLGRLAYLVSDELFKIA 130
>gnl|CDD|235981 PRK07239, PRK07239, bifunctional uroporphyrinogen-III
synthetase/response regulator domain protein;
Validated.
Length = 381
Score = 29.6 bits (67), Expect = 1.4
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 32 RLENITTLLISAVVGILTADFASGFVHWC--ADTWG 65
L T LI+A I+ A GF W AD WG
Sbjct: 52 ELRAATRALIAAPPDIVVATTGIGFRGWVEAADGWG 87
>gnl|CDD|165547 PHA03290, PHA03290, envelope glycoprotein I; Provisional.
Length = 357
Score = 29.6 bits (66), Expect = 1.5
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 59 WCADTWGSTEVPLIGKTLIRSFREHHVDPT--SITRHDFVETNGDNFLVTIP 108
W D GSTE + K E+ V P +E DNFL+ IP
Sbjct: 231 WLHDDLGSTEKKSVVKEGF----ENDVKPNDMHELPEKLLEDPADNFLIAIP 278
>gnl|CDD|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase.
Length = 610
Score = 29.8 bits (67), Expect = 1.6
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 32 RLENITTLLISAVVGILTADFASGFVHWC-----ADTWGSTEVPLIGKTLIRSFREHHVD 86
R E + + V G + +DF SG + D GST PL G +R+F D
Sbjct: 68 RSETKDPVRLRVVEGAIPSDFPSGTYYLAGPGLFTDDHGSTVHPLDGHGYLRAFHIDGGD 127
Query: 87 PTSITRHDFVET 98
+V+T
Sbjct: 128 RPVQYSARYVKT 139
>gnl|CDD|153121 cd01059, CCC1_like, CCC1-related family of proteins. CCC1_like:
This protein family includes the proteins related to
CCC1, a yeast vacuole transmembrane protein responsible
for the iron and manganese transport from the cytosol
into vacuole. It also includes the proteins similar to
nodulin-21, a plant nodule-specific protein that may be
involved in symbiotic nitrogen fixation. .
Length = 143
Score = 28.0 bits (63), Expect = 2.6
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 11 ISVTLCIILMLVNTYFIGSRIRLEN-ITTLLISAVVGILTADFASGFVHW 59
+SV L + L L +++ I L V+G+L A
Sbjct: 93 VSVALVVALALFLLGAFVAKLGGAKKIRAALRMVVLGLLAAALTYLLGRL 142
>gnl|CDD|219197 pfam06834, TraU, TraU protein. This family consists of several
bacterial TraU proteins. TraU appears to be more
essential to conjugal DNA transfer than to assembly of
pilus filaments.
Length = 305
Score = 26.9 bits (60), Expect = 9.5
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 49 TADFASGFVHWCADTWGSTEVPLIGKTLIRSFREHHVDP 87
TA + WCA +WGS P G F VDP
Sbjct: 181 TAGKPIDPLFWCAGSWGSV-YPRTG------FVVTQVDP 212
>gnl|CDD|227475 COG5146, PanK, Pantothenate kinase, acetyl-CoA regulated [Coenzyme
metabolism].
Length = 342
Score = 26.9 bits (59), Expect = 9.8
Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 16/106 (15%)
Query: 112 RMTYQFLTMNEQQ-------IKQNFNLYCFILLLAIFVA-FTNQCHDVSSSSFDITFYFQ 163
T Q + Q C + I + +D S DI +
Sbjct: 42 LTFKTEETKKIDQVVEWLNNLIQQHEKLCLTKITLIATGGGAYKFYDRMSKQLDIKVIRE 101
Query: 164 ------IHKWSHTYYSLPR--WVLFLQDCHLILPRRHHRYHHVAPH 201
I+ ++ ++P +V F + + H + P+
Sbjct: 102 NEMEILINGLNYFVINIPAEVFVEFDAASEGLGILLKEQGHDLYPY 147
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.141 0.473
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,831,010
Number of extensions: 1206750
Number of successful extensions: 1587
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1577
Number of HSP's successfully gapped: 36
Length of query: 248
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 154
Effective length of database: 6,768,326
Effective search space: 1042322204
Effective search space used: 1042322204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.0 bits)