RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5295
(248 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 2e-04
Identities = 35/247 (14%), Positives = 73/247 (29%), Gaps = 64/247 (25%)
Query: 21 LVNTY--FIGSRIRLENITTLLISAVVGILTADFASGF-----VH-WCADTWGSTEVPLI 72
LV + ++ S + + V+ + +F + + +H A + L+
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQF--DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 73 G-KTLIRS-FREHHVDPTSITRHD---FVE--TNGDNFLVTIPFLG---RMTYQFLTMNE 122
K LI++ + + G+ LV I F G Y F E
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-FGGQGNTDDY-F---EE 172
Query: 123 -QQIKQNFNLYCFILLLAIFVAFTNQCHDVSSSSFDITFYFQ----IHKW--------SH 169
+ + + Y +L+ + ++ ++ D F I +W
Sbjct: 173 LRDL---YQTY-HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 170 TY-----YSLPRWVLFL-QDCHLILPRRHHRYHHVAPHETYYCITTGWLNWPLEQIRFWP 223
Y S P ++ + Q H ++ + + T
Sbjct: 229 DYLLSIPISCP--LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG-------------- 272
Query: 224 HLESVVT 230
H + +VT
Sbjct: 273 HSQGLVT 279
Score = 31.9 bits (72), Expect = 0.21
Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 27/129 (20%)
Query: 65 GSTEVPLIGKTLIRSF---RE------HHVDPT---SITRHDFVETNGDNFLVTIPFLGR 112
GS E + G L ++ ++ +H T SI D V N P
Sbjct: 1625 GSQEQGM-GMDLYKTSKAAQDVWNRADNHFKDTYGFSIL--DIVINN--------P--VN 1671
Query: 113 MTYQFLTMNEQQIKQNFNLYCFILLLAIFVAFTNQCHDVSSSSFDITFYFQIHKWSHTYY 172
+T F ++I++N++ F ++ + +++ S TF + S T +
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1731
Query: 173 SLPRWVLFL 181
+ P L L
Sbjct: 1732 TQPA--LTL 1738
Score = 31.6 bits (71), Expect = 0.27
Identities = 49/332 (14%), Positives = 90/332 (27%), Gaps = 146/332 (43%)
Query: 11 ISVTLCIILMLVNTYFIGSRI----------RLENITTL---LISAVVGILTAD----F- 52
IS L ++ L + Y + +++ L+ T L++AV I D F
Sbjct: 236 ISCPLIGVIQLAH-YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA-IAETDSWESFF 293
Query: 53 --ASGFVHW-------CADTWGSTEVPLIGKTLIRSFREH-HVDPT---SIT--RHDFVE 97
+ C + + +T +P +++ E+ P+ SI+ + V+
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPP---SILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 98 T--------------------NG-DNFLVT--------------------------IPFL 110
NG N +V+ IPF
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 111 GR---MTYQFLTMN-----------EQQIKQNFNLYCFILLLAIFVAFTNQCHDVSSSSF 156
R + +FL + I ++ L+ V+F ++
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKD--------LVKNNVSF-------NAKDI 455
Query: 157 DITFYFQIHKWSHTYYSLPRWVLFLQDCHLILPRRHHRYHHVAPHETYYCITTGWLNWPL 216
I Y S L+ + R CI + W
Sbjct: 456 QIPVY-DTFDGSD-----------LRVLSGSISERIVD-----------CIIRLPVKWE- 491
Query: 217 EQIRFWP-HLESVVTF----VTGYKPRTDDLK 243
+F H ++ F +G T K
Sbjct: 492 TTTQFKATH---ILDFGPGGASGLGVLTHRNK 520
Score = 27.7 bits (61), Expect = 4.5
Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 34/109 (31%)
Query: 78 RSFR------EHHVD-PTSITRHDFVETNGDNFLVTIPFLGRMTYQFLTMNEQQIKQNFN 130
R EH + PT+ + F +P T F +E
Sbjct: 7 RPLTLSHGSLEHVLLVPTAS--FFIASQLQEQFNKILP---EPTEGFAADDEPTTPAE-- 59
Query: 131 LYCFILLLAIFVAFTNQCHDVSSSS------------FDITFYFQ--IH 165
L+ F+ + + + S F+ + IH
Sbjct: 60 ------LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 27.5 bits (62), Expect = 4.0
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 192 HHRYHHVAPHETYYCITTGWLNWPLEQIRFWP--HLESVVTFVTG 234
HH +HH + H + ++N E + E+ V VTG
Sbjct: 7 HHHHHHSSGHIEGRHMKLEFMNLLSENKKENYYYCGENKVALVTG 51
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 26.5 bits (59), Expect = 5.8
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 192 HHRYHHVAPHETYYC 206
HH +HH + E Y
Sbjct: 2 HHHHHHSSGRENLYF 16
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain,
non-heme iron, conformational change, dioxygenase,
oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa}
Length = 698
Score = 26.8 bits (58), Expect = 8.8
Identities = 23/158 (14%), Positives = 46/158 (29%), Gaps = 15/158 (9%)
Query: 59 WCADTWGSTEVPLIGKTLIRSFREHHVDPTSITRHDFVETNGDNFLVTIPFLGRMTYQFL 118
A T S + L GK + +D +DF D + + +G + L
Sbjct: 32 RGAGTDASVSIKLTGKDGAET-SAFSLDKY--FHNDFESGGTDTYDQSGVDVGEIAMITL 88
Query: 119 TMNEQQIKQNFNLYCFILLLAIFVAFTNQCHDVSSSSFDITFYFQIHKWSHTYYSLPRWV 178
N +K ++ + I+ ++ F + F ++W +
Sbjct: 89 KENGFGLKSDWYIAKVII-----------EKIDEATGFSNKYIFPCYRWVIKQLVVYEGK 137
Query: 179 LFL-QDCHLILPRRHHRYHHVAPHETYYCITTGWLNWP 215
L + R V+ ++ Y T
Sbjct: 138 AILPNSKDNVKTIAEQRTKEVSENKKLYKWGTDPRYVQ 175
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.141 0.473
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,998,868
Number of extensions: 227992
Number of successful extensions: 582
Number of sequences better than 10.0: 1
Number of HSP's gapped: 582
Number of HSP's successfully gapped: 19
Length of query: 248
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,160,982
Effective search space: 653274174
Effective search space used: 653274174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.1 bits)