RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5295
         (248 letters)



>d2nzwa1 c.87.1.11 (A:1-349) Alpha1,3-fucosyltransferase FucT
           {Helicobacter pylori [TaxId: 210]}
          Length = 349

 Score = 27.7 bits (61), Expect = 1.4
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 139 AIFVAFTNQCHDVSSSSFDITFYFQIHKWSHTYYSLPRWVLFLQD 183
           A  V +T +    + + FD    F    ++  Y  +P +   L  
Sbjct: 87  AKRVFYTGENESPNFNLFDYAIGFDELDFNDRYLRMPLYYDRLHH 131


>d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus
           thermophilus [TaxId: 274]}
          Length = 122

 Score = 26.7 bits (58), Expect = 1.8
 Identities = 9/48 (18%), Positives = 12/48 (25%)

Query: 175 PRWVLFLQDCHLILPRRHHRYHHVAPHETYYCITTGWLNWPLEQIRFW 222
           P  +L  ++           Y         Y  T G    P E   F 
Sbjct: 22  PPVLLVAEEASRWPEALPEGYAFYLLDLPGYGRTEGPRMAPEELAHFV 69


>d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle
           domain {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 98

 Score = 25.1 bits (54), Expect = 4.1
 Identities = 6/43 (13%), Positives = 14/43 (32%)

Query: 138 LAIFVAFTNQCHDVSSSSFDITFYFQIHKWSHTYYSLPRWVLF 180
            A  V F N+  +++ +                  +L R+ + 
Sbjct: 15  HAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMR 57


>d1ejba_ c.16.1.1 (A:) Lumazine synthase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 168

 Score = 25.4 bits (55), Expect = 6.1
 Identities = 7/69 (10%), Positives = 16/69 (23%)

Query: 34  ENITTLLISAVVGILTADFASGFVHWCADTWGSTEVPLIGKTLIRSFREHHVDPTSITRH 93
             I   L+   +  + +              GS E+P   K  +    +       +   
Sbjct: 28  RVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPI 87

Query: 94  DFVETNGDN 102
             +      
Sbjct: 88  GVLIKGSTM 96


>d1xr0b_ b.55.1.2 (B:) FGFR substrate 2 (SNT-1) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 129

 Score = 24.5 bits (53), Expect = 7.9
 Identities = 4/23 (17%), Positives = 12/23 (52%)

Query: 212 LNWPLEQIRFWPHLESVVTFVTG 234
           + W    +R + +  ++ +F +G
Sbjct: 48  VKWHYLCLRRYGYDSNLFSFESG 70


>d1mixa2 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus) [TaxId:
           9031]}
          Length = 92

 Score = 24.0 bits (52), Expect = 9.1
 Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 15/76 (19%)

Query: 159 TFYFQIHKWSHTYYSLPRWVLFLQDCHLILPRRHHRYHHVAPHETYYCITTGWLNWPLEQ 218
           +F+    K       +PR +   ++C + +  +                      W L  
Sbjct: 3   SFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQ---------------EWSLTN 47

Query: 219 IRFWPHLESVVTFVTG 234
           I+ W       T   G
Sbjct: 48  IKRWAASPKSFTLDFG 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.141    0.473 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,008,426
Number of extensions: 46656
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 16
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.3 bits)