Query psy5297
Match_columns 185
No_of_seqs 220 out of 2145
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 22:56:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 3.8E-47 8.2E-52 294.0 11.7 173 5-185 2-223 (240)
2 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.9E-45 1.1E-49 291.2 11.5 173 4-185 3-225 (254)
3 COG1120 FepC ABC-type cobalami 100.0 9.5E-45 2.1E-49 290.7 12.1 175 5-185 2-226 (258)
4 COG1116 TauB ABC-type nitrate/ 100.0 8.6E-44 1.9E-48 281.3 11.6 167 5-178 3-213 (248)
5 COG1135 AbcC ABC-type metal io 100.0 9.6E-43 2.1E-47 281.7 14.9 177 6-184 2-228 (339)
6 COG1125 OpuBA ABC-type proline 100.0 5.3E-43 1.2E-47 276.6 12.6 172 6-184 2-222 (309)
7 COG1127 Ttg2A ABC-type transpo 100.0 1.6E-42 3.4E-47 272.0 15.0 175 3-184 6-232 (263)
8 COG1136 SalX ABC-type antimicr 100.0 1.9E-42 4.1E-47 272.6 12.0 169 6-177 2-221 (226)
9 COG1137 YhbG ABC-type (unclass 100.0 1.6E-43 3.6E-48 270.9 5.7 174 5-185 4-226 (243)
10 COG1131 CcmA ABC-type multidru 100.0 4.7E-42 1E-46 282.6 14.3 171 6-183 5-222 (293)
11 COG3842 PotA ABC-type spermidi 100.0 5.7E-43 1.2E-47 291.3 8.5 178 1-185 1-224 (352)
12 COG3638 ABC-type phosphate/pho 100.0 9E-42 2E-46 267.1 12.7 176 4-185 2-235 (258)
13 PRK13537 nodulation ABC transp 100.0 2.5E-41 5.4E-46 280.0 14.6 176 1-184 3-224 (306)
14 COG1117 PstB ABC-type phosphat 100.0 3.9E-41 8.4E-46 260.1 13.3 173 3-184 5-234 (253)
15 PRK13536 nodulation factor exp 100.0 8.7E-41 1.9E-45 280.1 14.7 174 3-184 39-258 (340)
16 COG3839 MalK ABC-type sugar tr 100.0 1.1E-41 2.3E-46 282.3 8.9 174 5-185 3-221 (338)
17 COG1118 CysA ABC-type sulfate/ 100.0 1.6E-41 3.4E-46 274.3 8.4 161 23-185 15-225 (345)
18 COG4555 NatA ABC-type Na+ tran 100.0 3.9E-41 8.4E-46 258.1 9.9 172 6-184 2-219 (245)
19 COG1124 DppF ABC-type dipeptid 100.0 8E-41 1.7E-45 262.9 10.5 179 4-185 2-229 (252)
20 COG1122 CbiO ABC-type cobalt t 100.0 7.6E-41 1.7E-45 266.7 10.4 174 5-184 3-225 (235)
21 TIGR02314 ABC_MetN D-methionin 100.0 8.4E-41 1.8E-45 280.2 10.7 176 6-184 2-227 (343)
22 COG4152 ABC-type uncharacteriz 100.0 7.4E-41 1.6E-45 263.1 9.5 172 5-184 2-216 (300)
23 PRK11650 ugpC glycerol-3-phosp 100.0 9E-41 2E-45 281.6 10.4 174 5-184 3-221 (356)
24 PRK11432 fbpC ferric transport 100.0 1.3E-40 2.7E-45 280.1 11.1 174 4-184 5-223 (351)
25 cd03261 ABC_Org_Solvent_Resist 100.0 1.4E-40 3E-45 265.6 10.7 159 23-183 13-222 (235)
26 TIGR03265 PhnT2 putative 2-ami 100.0 1.2E-40 2.7E-45 280.4 10.8 173 5-184 4-221 (353)
27 TIGR01288 nodI ATP-binding ABC 100.0 1.9E-40 4.2E-45 274.3 11.5 173 4-184 3-221 (303)
28 cd03265 ABC_DrrA DrrA is the A 100.0 1.7E-40 3.7E-45 262.7 10.2 160 23-184 13-218 (220)
29 TIGR01188 drrA daunorubicin re 100.0 9E-40 1.9E-44 270.2 13.9 160 22-184 5-210 (302)
30 COG0411 LivG ABC-type branched 100.0 6.6E-41 1.4E-45 263.5 6.5 176 4-185 3-237 (250)
31 PRK09452 potA putrescine/sperm 100.0 3.6E-40 7.8E-45 279.3 10.9 174 4-184 13-231 (375)
32 cd03259 ABC_Carb_Solutes_like 100.0 3.7E-40 8E-45 259.5 10.1 156 23-180 13-213 (213)
33 PRK10851 sulfate/thiosulfate t 100.0 9E-40 2E-44 275.2 11.2 172 6-184 3-223 (353)
34 PRK13637 cbiO cobalt transport 100.0 1.7E-39 3.6E-44 266.9 12.5 177 6-184 3-231 (287)
35 cd03293 ABC_NrtD_SsuB_transpor 100.0 8.9E-40 1.9E-44 258.6 10.5 159 23-183 17-219 (220)
36 TIGR01186 proV glycine betaine 100.0 5.8E-40 1.3E-44 276.8 10.0 161 22-184 5-216 (363)
37 PRK11000 maltose/maltodextrin 100.0 7.8E-40 1.7E-44 277.1 10.8 173 5-184 3-220 (369)
38 TIGR03258 PhnT 2-aminoethylpho 100.0 8.6E-40 1.9E-44 276.0 10.6 173 5-184 5-225 (362)
39 COG0410 LivF ABC-type branched 100.0 1.1E-39 2.3E-44 254.9 10.0 174 5-184 3-223 (237)
40 PRK11607 potG putrescine trans 100.0 1.4E-39 3.1E-44 275.9 11.3 173 5-184 19-236 (377)
41 PRK11247 ssuB aliphatic sulfon 100.0 4E-39 8.6E-44 260.9 13.4 173 3-182 10-218 (257)
42 cd03296 ABC_CysA_sulfate_impor 100.0 1.3E-39 2.7E-44 260.8 10.2 173 5-184 2-223 (239)
43 TIGR03522 GldA_ABC_ATP gliding 100.0 1.6E-39 3.4E-44 268.6 11.1 170 6-184 3-218 (301)
44 cd03258 ABC_MetN_methionine_tr 100.0 2.3E-39 5.1E-44 258.1 11.4 176 6-184 2-227 (233)
45 PRK09536 btuD corrinoid ABC tr 100.0 2E-39 4.2E-44 276.7 11.6 172 5-184 3-225 (402)
46 PRK11629 lolD lipoprotein tran 100.0 3.7E-39 8.1E-44 257.1 12.1 177 1-181 1-228 (233)
47 cd03301 ABC_MalK_N The N-termi 100.0 1.9E-39 4.1E-44 255.3 10.0 156 23-180 13-213 (213)
48 PRK10619 histidine/lysine/argi 100.0 1.4E-38 3E-43 257.4 15.3 176 1-184 1-238 (257)
49 cd03218 ABC_YhbG The ABC trans 100.0 2.3E-39 4.9E-44 257.9 10.4 159 23-184 13-219 (232)
50 COG2884 FtsE Predicted ATPase 100.0 3.8E-39 8.2E-44 245.0 11.0 168 6-182 2-221 (223)
51 PRK11153 metN DL-methionine tr 100.0 9.8E-39 2.1E-43 268.2 14.5 176 6-184 2-227 (343)
52 TIGR00960 3a0501s02 Type II (G 100.0 1.6E-38 3.4E-43 250.7 14.8 165 6-176 2-216 (216)
53 PRK13651 cobalt transporter AT 100.0 2.6E-39 5.7E-44 267.7 10.8 177 5-184 2-251 (305)
54 PRK13634 cbiO cobalt transport 100.0 6.5E-39 1.4E-43 263.7 12.5 178 5-184 2-232 (290)
55 PRK11614 livF leucine/isoleuci 100.0 1.2E-38 2.6E-43 254.7 13.6 176 1-184 1-223 (237)
56 cd03268 ABC_BcrA_bacitracin_re 100.0 5.3E-39 1.1E-43 252.0 11.1 154 23-179 13-207 (208)
57 PRK11264 putative amino-acid A 100.0 9.7E-39 2.1E-43 257.0 12.9 172 5-184 3-230 (250)
58 PRK11831 putative ABC transpor 100.0 2.1E-38 4.6E-43 258.0 14.8 174 4-184 6-230 (269)
59 cd03269 ABC_putative_ATPase Th 100.0 6.8E-39 1.5E-43 251.8 11.4 154 23-179 13-209 (210)
60 PRK11300 livG leucine/isoleuci 100.0 2.2E-38 4.7E-43 255.7 14.6 177 1-184 1-240 (255)
61 PRK13636 cbiO cobalt transport 100.0 2.2E-38 4.7E-43 259.8 14.7 178 1-184 1-228 (283)
62 PRK13646 cbiO cobalt transport 100.0 9.8E-39 2.1E-43 262.2 12.7 177 6-184 3-232 (286)
63 TIGR02315 ABC_phnC phosphonate 100.0 8E-39 1.7E-43 256.4 11.8 173 6-184 2-232 (243)
64 cd03256 ABC_PhnC_transporter A 100.0 1.9E-38 4E-43 253.8 13.8 160 23-184 14-231 (241)
65 cd03260 ABC_PstB_phosphate_tra 100.0 3.5E-38 7.5E-43 250.4 14.7 159 23-185 13-227 (227)
66 PRK15079 oligopeptide ABC tran 100.0 6.4E-39 1.4E-43 268.0 11.0 180 3-184 6-248 (331)
67 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 6E-39 1.3E-43 253.3 10.2 151 23-176 17-218 (218)
68 cd03263 ABC_subfamily_A The AB 100.0 2.4E-38 5.3E-43 250.1 13.6 158 23-184 15-218 (220)
69 cd03219 ABC_Mj1267_LivG_branch 100.0 6.4E-39 1.4E-43 255.9 10.3 159 23-184 13-229 (236)
70 cd03285 ABC_MSH2_euk MutS2 hom 100.0 1.2E-37 2.5E-42 247.3 17.2 174 8-181 2-175 (222)
71 PRK10070 glycine betaine trans 100.0 5.1E-39 1.1E-43 274.0 10.0 160 23-184 41-251 (400)
72 PRK13647 cbiO cobalt transport 100.0 3.5E-38 7.5E-43 257.5 14.5 172 5-183 4-223 (274)
73 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6E-39 1.3E-43 261.3 9.9 161 21-183 35-246 (269)
74 cd03226 ABC_cobalt_CbiO_domain 100.0 2.2E-38 4.7E-43 248.2 12.7 152 23-177 13-205 (205)
75 cd03295 ABC_OpuCA_Osmoprotecti 100.0 9E-39 1.9E-43 256.3 10.6 159 23-183 14-221 (242)
76 PRK13635 cbiO cobalt transport 100.0 1.1E-38 2.3E-43 261.1 11.2 177 1-183 1-225 (279)
77 cd03224 ABC_TM1139_LivF_branch 100.0 9.2E-39 2E-43 252.7 10.2 159 23-184 13-218 (222)
78 cd03266 ABC_NatA_sodium_export 100.0 4.1E-38 8.9E-43 248.5 13.8 153 24-179 19-217 (218)
79 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.1E-38 2.4E-43 254.9 10.6 170 6-183 2-217 (236)
80 PRK09493 glnQ glutamine ABC tr 100.0 5.4E-38 1.2E-42 251.4 14.5 170 6-183 2-221 (240)
81 PRK14250 phosphate ABC transpo 100.0 1.7E-38 3.6E-43 254.8 11.5 172 5-183 3-217 (241)
82 TIGR03415 ABC_choXWV_ATP choli 100.0 7.9E-39 1.7E-43 271.2 10.1 162 21-184 35-251 (382)
83 PRK10575 iron-hydroxamate tran 100.0 5.4E-38 1.2E-42 255.1 14.4 175 3-184 9-234 (265)
84 PRK13631 cbiO cobalt transport 100.0 3.6E-38 7.8E-43 262.5 13.7 179 3-184 19-262 (320)
85 TIGR02673 FtsE cell division A 100.0 2.6E-38 5.7E-43 248.9 12.1 163 6-175 2-214 (214)
86 PRK11124 artP arginine transpo 100.0 2.3E-38 5.1E-43 253.8 12.0 171 6-184 3-227 (242)
87 PRK13643 cbiO cobalt transport 100.0 4.6E-38 9.9E-43 258.5 13.9 176 6-184 2-230 (288)
88 PRK13638 cbiO cobalt transport 100.0 2.6E-38 5.6E-43 257.7 11.7 170 6-183 2-221 (271)
89 PRK10895 lipopolysaccharide AB 100.0 9E-38 2E-42 250.2 14.5 172 5-184 3-223 (241)
90 PRK11248 tauB taurine transpor 100.0 2.6E-38 5.7E-43 255.8 11.5 169 6-181 2-214 (255)
91 PRK10253 iron-enterobactin tra 100.0 2.8E-38 6.1E-43 256.7 11.5 174 4-184 6-230 (265)
92 PRK13641 cbiO cobalt transport 100.0 7.1E-38 1.5E-42 257.2 13.9 177 5-184 2-231 (287)
93 PRK11308 dppF dipeptide transp 100.0 8.9E-38 1.9E-42 260.8 14.5 180 3-184 3-241 (327)
94 TIGR03410 urea_trans_UrtE urea 100.0 8.6E-38 1.9E-42 248.6 13.6 160 23-184 13-218 (230)
95 PRK13652 cbiO cobalt transport 100.0 2.9E-38 6.2E-43 258.3 11.2 174 5-184 3-224 (277)
96 PRK11701 phnK phosphonate C-P 100.0 2.8E-38 6E-43 255.7 10.9 177 1-184 2-238 (258)
97 PRK11022 dppD dipeptide transp 100.0 2E-38 4.4E-43 264.6 10.2 177 5-184 3-240 (326)
98 PRK13650 cbiO cobalt transport 100.0 8.6E-38 1.9E-42 255.8 13.7 175 5-184 4-226 (279)
99 TIGR02211 LolD_lipo_ex lipopro 100.0 4.1E-38 9E-43 249.0 11.2 169 6-177 2-220 (221)
100 PRK13548 hmuV hemin importer A 100.0 3.9E-38 8.4E-43 255.1 11.3 172 6-184 3-227 (258)
101 PRK09984 phosphonate/organopho 100.0 9.8E-38 2.1E-42 253.0 13.7 175 3-184 2-239 (262)
102 TIGR03005 ectoine_ehuA ectoine 100.0 3.2E-38 6.9E-43 254.5 10.6 159 23-183 13-232 (252)
103 PRK13633 cobalt transporter AT 100.0 3E-38 6.6E-43 258.5 10.4 177 5-184 4-230 (280)
104 PRK11231 fecE iron-dicitrate t 100.0 2E-37 4.4E-42 250.3 14.7 171 6-184 3-224 (255)
105 PRK14242 phosphate transporter 100.0 1.6E-37 3.5E-42 250.4 14.2 173 2-183 3-233 (253)
106 TIGR03740 galliderm_ABC gallid 100.0 4.4E-38 9.6E-43 249.3 10.7 158 23-183 13-209 (223)
107 TIGR03411 urea_trans_UrtD urea 100.0 6E-38 1.3E-42 251.3 11.4 171 5-184 2-228 (242)
108 PRK14274 phosphate ABC transpo 100.0 2.3E-37 4.9E-42 250.5 14.6 175 1-184 8-240 (259)
109 PRK15093 antimicrobial peptide 100.0 3.8E-38 8.2E-43 263.4 10.1 177 5-184 3-245 (330)
110 cd03264 ABC_drug_resistance_li 100.0 1.5E-37 3.1E-42 244.4 12.9 152 23-179 13-210 (211)
111 TIGR03873 F420-0_ABC_ATP propo 100.0 6E-38 1.3E-42 253.5 10.9 171 6-184 2-223 (256)
112 PRK13549 xylose transporter AT 100.0 8.6E-38 1.9E-42 274.3 12.8 176 1-184 1-229 (506)
113 PRK13640 cbiO cobalt transport 100.0 1.6E-37 3.4E-42 254.5 13.4 178 1-184 1-229 (282)
114 cd03292 ABC_FtsE_transporter F 100.0 1E-37 2.2E-42 245.5 11.8 151 23-176 14-214 (214)
115 PRK09700 D-allose transporter 100.0 8.3E-38 1.8E-42 274.6 12.6 176 1-184 1-231 (510)
116 cd03225 ABC_cobalt_CbiO_domain 100.0 2.7E-37 5.8E-42 242.8 14.0 150 23-175 14-211 (211)
117 cd03262 ABC_HisP_GlnQ_permease 100.0 2.3E-37 5E-42 243.3 13.6 151 23-176 13-213 (213)
118 COG4175 ProV ABC-type proline/ 100.0 1.1E-37 2.4E-42 252.8 12.0 161 24-185 42-252 (386)
119 PRK13648 cbiO cobalt transport 100.0 2E-37 4.3E-42 252.2 13.6 178 1-184 3-228 (269)
120 PRK15439 autoinducer 2 ABC tra 100.0 7E-38 1.5E-42 275.2 11.7 172 5-184 11-226 (510)
121 cd03257 ABC_NikE_OppD_transpor 100.0 2.4E-37 5.3E-42 245.4 13.7 171 6-179 2-227 (228)
122 PRK10908 cell division protein 100.0 4.1E-37 8.9E-42 243.6 14.9 166 6-178 2-217 (222)
123 PRK09544 znuC high-affinity zi 100.0 5.3E-38 1.1E-42 253.5 9.8 172 4-183 3-205 (251)
124 PRK10584 putative ABC transpor 100.0 1.4E-37 3E-42 247.1 12.1 171 4-179 5-227 (228)
125 COG3840 ThiQ ABC-type thiamine 100.0 4.2E-38 9.1E-43 238.1 8.4 159 25-184 14-216 (231)
126 PRK13639 cbiO cobalt transport 100.0 2E-37 4.3E-42 253.1 13.0 172 6-184 2-223 (275)
127 PRK14268 phosphate ABC transpo 100.0 2.4E-37 5.2E-42 250.3 13.3 172 4-184 11-239 (258)
128 PRK09473 oppD oligopeptide tra 100.0 6.8E-38 1.5E-42 261.8 10.4 179 3-184 10-248 (330)
129 PRK10762 D-ribose transporter 100.0 1.5E-37 3.2E-42 272.5 12.8 173 4-184 3-227 (501)
130 cd03235 ABC_Metallic_Cations A 100.0 9.8E-38 2.1E-42 245.7 10.5 151 23-176 12-210 (213)
131 PRK13649 cbiO cobalt transport 100.0 3.3E-37 7.2E-42 252.2 13.6 176 6-184 3-231 (280)
132 cd03214 ABC_Iron-Siderophores_ 100.0 2.2E-37 4.7E-42 238.2 11.7 145 23-179 12-179 (180)
133 TIGR00972 3a0107s01c2 phosphat 100.0 3.3E-37 7.2E-42 247.9 13.3 169 6-183 2-228 (247)
134 PRK13645 cbiO cobalt transport 100.0 1.7E-37 3.6E-42 255.1 11.5 178 4-183 5-236 (289)
135 PRK14239 phosphate transporter 100.0 3.8E-37 8.3E-42 248.0 13.4 174 1-183 1-232 (252)
136 TIGR01184 ntrCD nitrate transp 100.0 8E-38 1.7E-42 249.3 9.3 155 26-182 1-199 (230)
137 PRK15112 antimicrobial peptide 100.0 9.8E-38 2.1E-42 253.9 9.8 178 4-183 3-235 (267)
138 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.2E-37 2.6E-42 244.9 9.6 151 27-179 15-210 (211)
139 TIGR02769 nickel_nikE nickel i 100.0 1.5E-37 3.2E-42 252.5 10.5 177 6-184 3-237 (265)
140 PRK14273 phosphate ABC transpo 100.0 3.5E-37 7.7E-42 248.6 12.5 172 4-184 6-235 (254)
141 PRK15056 manganese/iron transp 100.0 1.8E-37 3.9E-42 253.0 10.8 176 1-184 2-227 (272)
142 TIGR01277 thiQ thiamine ABC tr 100.0 1.4E-37 3.1E-42 244.9 9.8 155 25-181 13-212 (213)
143 PRK13632 cbiO cobalt transport 100.0 1.7E-37 3.7E-42 252.9 10.4 174 4-183 6-227 (271)
144 cd03300 ABC_PotA_N PotA is an 100.0 1.3E-37 2.8E-42 248.3 9.4 159 23-183 13-216 (232)
145 PRK13644 cbiO cobalt transport 100.0 5.9E-37 1.3E-41 250.2 13.5 171 6-184 2-221 (274)
146 PRK14245 phosphate ABC transpo 100.0 9.7E-37 2.1E-41 245.6 14.6 171 5-184 3-231 (250)
147 PRK14247 phosphate ABC transpo 100.0 5.6E-37 1.2E-41 246.8 13.2 171 5-184 3-231 (250)
148 TIGR02323 CP_lyasePhnK phospho 100.0 1.7E-37 3.8E-42 250.2 10.2 173 4-183 2-234 (253)
149 cd03267 ABC_NatA_like Similar 100.0 4.5E-37 9.8E-42 245.8 12.4 157 21-179 32-235 (236)
150 PRK10771 thiQ thiamine transpo 100.0 1.9E-37 4.1E-42 247.2 10.0 169 6-183 2-215 (232)
151 PRK10744 pstB phosphate transp 100.0 7.1E-37 1.5E-41 247.8 13.4 172 3-183 11-240 (260)
152 PRK11144 modC molybdate transp 100.0 1.4E-37 3.1E-42 262.0 9.6 155 28-184 16-215 (352)
153 TIGR03269 met_CoM_red_A2 methy 100.0 2.6E-37 5.6E-42 272.1 11.6 178 5-184 279-514 (520)
154 TIGR01978 sufC FeS assembly AT 100.0 2.1E-37 4.6E-42 248.0 9.7 158 23-183 13-230 (243)
155 PRK14248 phosphate ABC transpo 100.0 8.9E-37 1.9E-41 248.3 13.2 170 5-183 21-248 (268)
156 PRK14267 phosphate ABC transpo 100.0 9.4E-37 2E-41 245.9 13.2 170 5-183 4-233 (253)
157 PRK14235 phosphate transporter 100.0 1.7E-36 3.6E-41 246.6 14.7 172 3-183 17-247 (267)
158 PRK10938 putative molybdenum t 100.0 3.6E-37 7.9E-42 269.4 11.6 171 5-183 3-220 (490)
159 TIGR02142 modC_ABC molybdenum 100.0 4.8E-37 1.1E-41 258.9 11.7 155 28-184 15-218 (354)
160 TIGR02770 nickel_nikD nickel i 100.0 3.2E-37 6.9E-42 245.7 9.8 158 25-184 1-212 (230)
161 COG0444 DppD ABC-type dipeptid 100.0 3.5E-37 7.5E-42 251.3 9.7 177 6-184 2-240 (316)
162 PRK10261 glutathione transport 100.0 2.9E-37 6.4E-42 276.8 10.1 178 3-183 10-254 (623)
163 PRK10261 glutathione transport 100.0 4E-37 8.6E-42 275.9 11.0 160 23-184 337-550 (623)
164 PRK14269 phosphate ABC transpo 100.0 1.5E-36 3.3E-41 244.0 13.3 169 6-183 3-226 (246)
165 PRK14251 phosphate ABC transpo 100.0 1.4E-36 3E-41 244.7 13.0 171 4-183 3-231 (251)
166 TIGR03269 met_CoM_red_A2 methy 100.0 9.9E-37 2.2E-41 268.4 13.2 159 23-183 13-254 (520)
167 TIGR00968 3a0106s01 sulfate AB 100.0 7.9E-37 1.7E-41 244.5 11.4 160 23-184 13-217 (237)
168 PRK10418 nikD nickel transport 100.0 8.9E-37 1.9E-41 246.5 11.7 172 5-184 4-227 (254)
169 PRK13642 cbiO cobalt transport 100.0 1.5E-36 3.3E-41 248.1 13.1 175 5-184 4-226 (277)
170 PRK14256 phosphate ABC transpo 100.0 2.1E-36 4.4E-41 243.9 13.5 172 4-184 3-233 (252)
171 COG1123 ATPase components of v 100.0 1.6E-36 3.5E-41 262.8 13.6 183 1-185 1-242 (539)
172 PRK15134 microcin C ABC transp 100.0 1.1E-36 2.4E-41 268.6 12.7 180 1-183 1-242 (529)
173 PRK14237 phosphate transporter 100.0 2.8E-36 6.1E-41 245.3 14.0 171 5-184 20-248 (267)
174 cd03297 ABC_ModC_molybdenum_tr 100.0 1.1E-36 2.4E-41 239.9 10.9 150 28-180 16-214 (214)
175 PRK14241 phosphate transporter 100.0 2.3E-36 5.1E-41 244.4 13.0 170 5-183 4-238 (258)
176 PRK14244 phosphate ABC transpo 100.0 3.5E-36 7.7E-41 242.4 13.9 174 1-183 1-233 (251)
177 PRK14275 phosphate ABC transpo 100.0 2.9E-36 6.3E-41 247.5 13.6 157 23-183 52-266 (286)
178 PRK10419 nikE nickel transport 100.0 1.5E-36 3.3E-41 247.0 11.7 178 5-184 3-238 (268)
179 PRK03695 vitamin B12-transport 100.0 9.2E-37 2E-41 245.7 10.2 156 25-183 11-218 (248)
180 PRK13546 teichoic acids export 100.0 1.3E-36 2.9E-41 247.0 11.2 177 5-184 4-229 (264)
181 PRK14259 phosphate ABC transpo 100.0 3.9E-36 8.5E-41 244.8 13.9 172 4-184 12-250 (269)
182 PRK14270 phosphate ABC transpo 100.0 5.1E-36 1.1E-40 241.5 14.3 173 3-184 2-232 (251)
183 PRK14240 phosphate transporter 100.0 3.1E-36 6.7E-41 242.5 12.9 170 5-183 3-230 (250)
184 cd03245 ABCC_bacteriocin_expor 100.0 4.6E-36 9.9E-41 237.1 13.6 167 6-179 3-219 (220)
185 cd03238 ABC_UvrA The excision 100.0 1.2E-36 2.7E-41 233.4 10.0 145 22-177 7-167 (176)
186 cd03252 ABCC_Hemolysin The ABC 100.0 2.7E-36 5.8E-41 241.0 12.4 157 23-184 15-222 (237)
187 cd03280 ABC_MutS2 MutS2 homolo 100.0 8.4E-36 1.8E-40 233.1 14.8 169 7-179 1-171 (200)
188 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.3E-36 2.8E-41 241.5 10.3 158 21-180 33-224 (224)
189 PRK15134 microcin C ABC transp 100.0 8.8E-37 1.9E-41 269.2 10.3 160 23-184 299-512 (529)
190 PRK10247 putative ABC transpor 100.0 4.4E-36 9.6E-41 238.4 13.2 172 3-182 5-222 (225)
191 PRK14262 phosphate ABC transpo 100.0 5.2E-36 1.1E-40 241.2 13.4 171 5-184 3-231 (250)
192 COG4598 HisP ABC-type histidin 100.0 1.6E-36 3.5E-41 229.5 9.7 172 4-185 5-239 (256)
193 PRK14253 phosphate ABC transpo 100.0 6.8E-36 1.5E-40 240.4 13.8 170 5-183 3-229 (249)
194 PRK14254 phosphate ABC transpo 100.0 4.7E-36 1E-40 246.2 13.1 172 3-183 37-265 (285)
195 PRK11288 araG L-arabinose tran 100.0 2.6E-36 5.7E-41 264.7 12.2 170 4-181 3-223 (501)
196 PRK13549 xylose transporter AT 100.0 4.1E-36 8.9E-41 263.7 13.4 176 5-185 259-492 (506)
197 PRK14265 phosphate ABC transpo 100.0 5.8E-36 1.3E-40 244.4 13.3 159 22-184 32-255 (274)
198 COG4525 TauB ABC-type taurine 100.0 1.2E-36 2.6E-41 232.6 8.4 173 8-182 3-219 (259)
199 PRK14271 phosphate ABC transpo 100.0 6.3E-36 1.4E-40 244.4 13.3 172 4-184 20-248 (276)
200 PRK14272 phosphate ABC transpo 100.0 6E-36 1.3E-40 241.0 12.9 170 5-183 4-232 (252)
201 PRK13547 hmuV hemin importer A 100.0 9.6E-36 2.1E-40 242.9 14.2 172 6-184 2-241 (272)
202 PRK10982 galactose/methyl gala 100.0 2.9E-36 6.2E-41 263.8 11.8 159 23-184 11-220 (491)
203 PRK14249 phosphate ABC transpo 100.0 7.6E-36 1.7E-40 240.5 12.9 170 5-183 4-231 (251)
204 cd03299 ABC_ModC_like Archeal 100.0 2.3E-36 5.1E-41 241.5 9.7 157 25-183 14-215 (235)
205 PRK14257 phosphate ABC transpo 100.0 7.9E-36 1.7E-40 249.2 13.3 173 5-184 80-310 (329)
206 cd03289 ABCC_CFTR2 The CFTR su 100.0 6E-36 1.3E-40 244.4 12.2 173 5-184 2-222 (275)
207 PRK14238 phosphate transporter 100.0 8.9E-36 1.9E-40 242.9 13.1 171 5-184 24-252 (271)
208 TIGR02633 xylG D-xylose ABC tr 100.0 6.2E-36 1.3E-40 262.2 13.1 171 6-184 2-227 (500)
209 PRK09700 D-allose transporter 100.0 5.6E-36 1.2E-40 263.0 12.6 156 24-182 277-493 (510)
210 TIGR02982 heterocyst_DevA ABC 100.0 9.1E-36 2E-40 235.7 12.5 168 6-176 2-219 (220)
211 COG1123 ATPase components of v 100.0 2.9E-36 6.4E-41 261.2 10.4 180 3-184 278-516 (539)
212 cd03251 ABCC_MsbA MsbA is an e 100.0 9E-36 1.9E-40 237.5 12.3 156 23-183 15-221 (234)
213 PRK14255 phosphate ABC transpo 100.0 1.1E-35 2.4E-40 239.6 12.8 171 4-183 4-232 (252)
214 PRK14243 phosphate transporter 100.0 1.8E-35 3.9E-40 240.2 14.0 172 4-184 9-245 (264)
215 PRK15439 autoinducer 2 ABC tra 100.0 5.9E-36 1.3E-40 263.0 11.9 167 15-184 268-489 (510)
216 PRK14261 phosphate ABC transpo 100.0 1.8E-35 3.8E-40 238.6 13.5 171 4-183 5-233 (253)
217 PRK14236 phosphate transporter 100.0 2E-35 4.3E-40 240.9 13.9 157 23-183 38-252 (272)
218 COG1129 MglA ABC-type sugar tr 100.0 8.8E-36 1.9E-40 256.6 12.2 173 2-181 5-228 (500)
219 CHL00131 ycf16 sulfate ABC tra 100.0 1E-35 2.3E-40 239.6 11.9 174 3-183 5-237 (252)
220 cd03254 ABCC_Glucan_exporter_l 100.0 8.8E-36 1.9E-40 236.8 11.3 170 5-183 2-222 (229)
221 PRK14258 phosphate ABC transpo 100.0 2.7E-35 5.8E-40 238.8 14.2 173 5-184 7-242 (261)
222 PRK13543 cytochrome c biogenes 100.0 6.8E-36 1.5E-40 235.7 10.4 162 4-173 10-212 (214)
223 PRK14246 phosphate ABC transpo 100.0 1.7E-35 3.8E-40 239.5 12.5 160 21-184 21-238 (257)
224 cd03244 ABCC_MRP_domain2 Domai 100.0 1.6E-35 3.5E-40 234.1 12.0 169 5-181 2-220 (221)
225 PRK14260 phosphate ABC transpo 100.0 2.7E-35 5.9E-40 238.4 13.5 171 5-184 7-240 (259)
226 cd03234 ABCG_White The White s 100.0 1.4E-35 3.1E-40 235.5 11.6 155 23-180 20-226 (226)
227 PRK09580 sufC cysteine desulfu 100.0 2.4E-35 5.2E-40 236.9 13.0 170 6-183 2-231 (248)
228 TIGR02633 xylG D-xylose ABC tr 100.0 1.5E-35 3.4E-40 259.7 12.9 159 23-184 273-489 (500)
229 PRK10762 D-ribose transporter 100.0 1.1E-35 2.5E-40 260.6 12.0 167 15-184 257-481 (501)
230 PRK11288 araG L-arabinose tran 100.0 1.2E-35 2.5E-40 260.6 12.0 159 23-184 266-482 (501)
231 PRK14266 phosphate ABC transpo 100.0 4.4E-35 9.6E-40 235.8 14.1 170 6-184 4-231 (250)
232 cd03215 ABC_Carb_Monos_II This 100.0 5.3E-35 1.2E-39 225.3 13.9 139 24-176 14-182 (182)
233 cd03282 ABC_MSH4_euk MutS4 hom 100.0 1.8E-34 4E-39 226.2 17.2 157 8-166 2-158 (204)
234 cd03230 ABC_DR_subfamily_A Thi 100.0 2.1E-35 4.6E-40 225.8 11.5 136 23-176 13-173 (173)
235 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.2E-35 4.7E-40 235.9 12.1 156 23-183 16-222 (238)
236 cd03216 ABC_Carb_Monos_I This 100.0 4E-35 8.7E-40 222.4 12.8 146 23-178 13-162 (163)
237 COG4604 CeuD ABC-type enteroch 100.0 7.4E-36 1.6E-40 228.5 8.7 172 6-185 2-223 (252)
238 TIGR03608 L_ocin_972_ABC putat 100.0 2.4E-35 5.2E-40 230.7 11.8 146 23-171 11-206 (206)
239 PRK13545 tagH teichoic acids e 100.0 7.7E-36 1.7E-40 259.4 9.6 160 23-184 37-229 (549)
240 cd03213 ABCG_EPDR ABCG transpo 100.0 4.6E-35 1E-39 227.9 12.6 165 4-179 2-193 (194)
241 PRK14252 phosphate ABC transpo 100.0 5.7E-35 1.2E-39 237.3 13.3 170 5-183 16-245 (265)
242 PRK10982 galactose/methyl gala 100.0 4.7E-35 1E-39 256.1 13.1 158 23-183 261-476 (491)
243 cd03247 ABCC_cytochrome_bd The 100.0 1.1E-34 2.4E-39 222.7 13.6 141 23-179 15-177 (178)
244 COG4181 Predicted ABC-type tra 100.0 1.3E-34 2.9E-39 217.4 13.4 171 5-178 6-226 (228)
245 TIGR02324 CP_lyasePhnL phospho 100.0 3.8E-35 8.2E-40 232.6 11.2 163 6-171 2-222 (224)
246 cd03248 ABCC_TAP TAP, the Tran 100.0 2.1E-35 4.6E-40 234.3 9.7 166 4-176 10-226 (226)
247 PRK14263 phosphate ABC transpo 100.0 9.9E-35 2.1E-39 235.6 13.8 159 22-184 20-242 (261)
248 cd03231 ABC_CcmA_heme_exporter 100.0 8.5E-35 1.8E-39 227.4 12.7 147 22-171 12-198 (201)
249 TIGR01257 rim_protein retinal- 100.0 2.3E-35 4.9E-40 286.2 11.5 174 5-184 1937-2156(2272)
250 cd03229 ABC_Class3 This class 100.0 8.4E-35 1.8E-39 223.5 12.2 138 23-175 13-178 (178)
251 cd03232 ABC_PDR_domain2 The pl 100.0 8E-35 1.7E-39 226.1 12.3 164 5-180 3-192 (192)
252 cd03233 ABC_PDR_domain1 The pl 100.0 1.1E-34 2.3E-39 227.1 13.0 170 5-179 3-201 (202)
253 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.6E-35 5.7E-40 241.3 9.9 169 5-183 39-243 (282)
254 cd03246 ABCC_Protease_Secretio 100.0 9.4E-35 2E-39 222.2 12.2 137 23-176 15-173 (173)
255 cd03250 ABCC_MRP_domain1 Domai 100.0 1.9E-35 4.2E-40 231.3 8.6 150 23-175 18-204 (204)
256 PRK13538 cytochrome c biogenes 100.0 1.3E-34 2.7E-39 226.8 13.1 158 6-171 2-202 (204)
257 PRK10938 putative molybdenum t 100.0 5.3E-35 1.2E-39 255.7 12.0 158 22-181 272-486 (490)
258 COG4586 ABC-type uncharacteriz 100.0 1.1E-35 2.4E-40 237.0 6.9 158 24-183 38-242 (325)
259 COG1119 ModF ABC-type molybden 100.0 3E-35 6.5E-40 231.7 9.3 159 21-181 42-256 (257)
260 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.3E-34 5E-39 225.7 14.1 167 3-181 4-206 (207)
261 COG4559 ABC-type hemin transpo 100.0 4.1E-35 8.8E-40 226.6 9.5 163 21-185 12-228 (259)
262 COG4148 ModC ABC-type molybdat 100.0 1.4E-35 3.1E-40 237.2 7.2 155 27-185 15-216 (352)
263 PRK11819 putative ABC transpor 100.0 4.9E-35 1.1E-39 259.5 11.4 171 1-182 2-245 (556)
264 cd03288 ABCC_SUR2 The SUR doma 100.0 7.5E-35 1.6E-39 235.7 11.2 172 4-183 18-239 (257)
265 cd03253 ABCC_ATM1_transporter 100.0 1.5E-34 3.2E-39 230.7 12.7 156 23-183 14-220 (236)
266 COG4674 Uncharacterized ABC-ty 100.0 1.8E-35 3.8E-40 226.1 6.6 176 1-185 1-233 (249)
267 cd03237 ABC_RNaseL_inhibitor_d 100.0 5.4E-35 1.2E-39 235.3 9.7 149 24-174 8-192 (246)
268 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.7E-34 5.9E-39 224.5 13.4 148 23-182 13-189 (200)
269 COG2274 SunT ABC-type bacterio 100.0 7.7E-35 1.7E-39 262.2 11.7 172 6-184 472-693 (709)
270 PRK13409 putative ATPase RIL; 100.0 7.9E-35 1.7E-39 259.2 11.5 155 24-181 353-536 (590)
271 TIGR03771 anch_rpt_ABC anchore 100.0 5E-35 1.1E-39 232.2 9.0 150 31-184 1-198 (223)
272 PRK15064 ABC transporter ATP-b 100.0 6.4E-35 1.4E-39 257.4 10.4 167 6-183 2-238 (530)
273 PRK11174 cysteine/glutathione 100.0 1.6E-34 3.4E-39 257.6 12.7 158 23-184 363-569 (588)
274 PRK14264 phosphate ABC transpo 100.0 3.1E-34 6.8E-39 237.5 13.6 170 5-183 45-285 (305)
275 COG4161 ArtP ABC-type arginine 100.0 5.5E-34 1.2E-38 212.7 13.2 170 6-183 3-226 (242)
276 cd03243 ABC_MutS_homologs The 100.0 1.4E-33 3.1E-38 220.7 16.3 173 7-182 1-174 (202)
277 COG4608 AppF ABC-type oligopep 100.0 5.6E-35 1.2E-39 233.8 8.3 180 4-185 3-197 (268)
278 PRK11176 lipid transporter ATP 100.0 1.5E-34 3.3E-39 257.3 11.9 172 6-184 342-564 (582)
279 TIGR03375 type_I_sec_LssB type 100.0 1.6E-34 3.6E-39 261.9 11.7 172 6-184 464-685 (694)
280 TIGR01166 cbiO cobalt transpor 100.0 1.9E-34 4.2E-39 223.3 10.4 134 23-159 5-187 (190)
281 PRK15064 ABC transporter ATP-b 100.0 1.1E-34 2.3E-39 256.0 10.1 156 22-183 331-521 (530)
282 PRK15177 Vi polysaccharide exp 100.0 1.1E-34 2.4E-39 228.8 8.8 155 25-183 2-188 (213)
283 PRK13539 cytochrome c biogenes 100.0 4.3E-34 9.3E-39 224.4 11.9 158 5-172 2-199 (207)
284 PRK11160 cysteine/glutathione 100.0 2.4E-34 5.2E-39 255.9 11.7 172 6-184 339-559 (574)
285 PRK13540 cytochrome c biogenes 100.0 9.8E-34 2.1E-38 221.2 13.6 156 6-169 2-197 (200)
286 cd03228 ABCC_MRP_Like The MRP 100.0 5.4E-34 1.2E-38 217.6 11.8 133 24-175 16-171 (171)
287 PRK10790 putative multidrug tr 100.0 3.1E-34 6.7E-39 255.9 12.1 172 5-184 340-560 (592)
288 COG0488 Uup ATPase components 100.0 3.5E-34 7.6E-39 250.8 11.8 164 5-180 3-232 (530)
289 COG3845 ABC-type uncharacteriz 100.0 5E-34 1.1E-38 242.5 12.3 170 4-181 3-223 (501)
290 TIGR01842 type_I_sec_PrtD type 100.0 6E-34 1.3E-38 251.9 13.0 173 6-184 317-539 (544)
291 cd03223 ABCD_peroxisomal_ALDP 100.0 3.5E-34 7.6E-39 217.9 9.7 137 23-174 14-163 (166)
292 PRK10636 putative ABC transpor 100.0 2.3E-34 5.1E-39 258.6 10.2 155 22-182 324-512 (638)
293 TIGR01257 rim_protein retinal- 100.0 8.6E-34 1.9E-38 275.3 14.5 158 22-183 942-1145(2272)
294 PRK10636 putative ABC transpor 100.0 7.8E-34 1.7E-38 255.2 12.6 162 6-178 2-226 (638)
295 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 9.3E-34 2E-38 256.7 12.6 170 6-184 452-670 (686)
296 COG1134 TagH ABC-type polysacc 100.0 3.9E-34 8.4E-39 225.4 8.7 160 22-185 39-234 (249)
297 TIGR02203 MsbA_lipidA lipid A 100.0 1.3E-33 2.7E-38 250.7 13.0 159 22-184 344-553 (571)
298 COG4619 ABC-type uncharacteriz 100.0 5.3E-34 1.2E-38 213.5 8.8 155 21-177 14-213 (223)
299 TIGR01189 ccmA heme ABC export 100.0 1.9E-33 4.2E-38 219.1 12.3 135 22-159 12-187 (198)
300 PRK13657 cyclic beta-1,2-gluca 100.0 1.4E-33 3.1E-38 251.5 12.5 158 23-184 348-555 (588)
301 cd03290 ABCC_SUR1_N The SUR do 100.0 6.5E-34 1.4E-38 224.7 9.2 150 23-175 14-218 (218)
302 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.5E-33 5.5E-38 254.7 14.1 157 22-184 491-697 (710)
303 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1E-33 2.2E-38 250.9 11.1 168 4-182 3-243 (552)
304 COG0396 sufC Cysteine desulfur 100.0 2E-33 4.2E-38 219.4 10.7 170 5-182 3-229 (251)
305 PLN03211 ABC transporter G-25; 100.0 5.3E-34 1.1E-38 256.7 8.6 160 22-184 80-293 (659)
306 KOG0057|consensus 100.0 8.3E-34 1.8E-38 243.4 9.4 171 6-184 352-571 (591)
307 cd03284 ABC_MutS1 MutS1 homolo 100.0 1.8E-32 3.9E-37 216.7 15.9 177 7-184 1-178 (216)
308 cd03270 ABC_UvrA_I The excisio 100.0 1E-32 2.2E-37 219.5 13.9 157 22-180 7-226 (226)
309 TIGR02204 MsbA_rel ABC transpo 100.0 6.6E-33 1.4E-37 246.5 13.8 173 6-184 338-560 (576)
310 TIGR01194 cyc_pep_trnsptr cycl 100.0 7.5E-33 1.6E-37 245.5 14.1 156 23-180 355-552 (555)
311 TIGR00958 3a01208 Conjugate Tr 100.0 4.3E-33 9.3E-38 253.2 12.4 171 6-184 479-699 (711)
312 PRK10522 multidrug transporter 100.0 7E-33 1.5E-37 245.3 13.4 156 23-180 336-531 (547)
313 TIGR01846 type_I_sec_HlyB type 100.0 4.4E-33 9.6E-38 252.6 12.3 172 6-184 456-677 (694)
314 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.6E-33 5.6E-38 208.6 8.7 120 23-175 13-144 (144)
315 cd03286 ABC_MSH6_euk MutS6 hom 100.0 5.5E-32 1.2E-36 213.9 16.8 173 8-180 2-174 (218)
316 PRK11819 putative ABC transpor 100.0 3.4E-33 7.3E-38 247.8 10.6 154 22-181 336-527 (556)
317 COG4988 CydD ABC-type transpor 100.0 6.5E-33 1.4E-37 240.0 12.1 158 23-184 334-540 (559)
318 TIGR01192 chvA glucan exporter 100.0 6E-33 1.3E-37 247.5 12.2 158 23-184 348-555 (585)
319 PLN03073 ABC transporter F fam 100.0 4.4E-33 9.6E-38 252.4 11.5 154 23-182 522-709 (718)
320 TIGR01187 potA spermidine/putr 100.0 1E-33 2.2E-38 236.2 6.7 142 41-184 1-187 (325)
321 PRK11147 ABC transporter ATPas 100.0 6.1E-33 1.3E-37 249.4 12.1 152 22-179 331-519 (635)
322 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7E-33 1.5E-37 245.6 12.3 150 22-177 334-520 (552)
323 cd03222 ABC_RNaseL_inhibitor T 100.0 2E-33 4.3E-38 215.8 7.6 130 21-177 11-151 (177)
324 cd03287 ABC_MSH3_euk MutS3 hom 100.0 7.1E-32 1.5E-36 213.9 16.6 162 6-167 1-162 (222)
325 PRK10535 macrolide transporter 100.0 1E-32 2.2E-37 248.5 13.1 176 5-184 4-229 (648)
326 COG4107 PhnK ABC-type phosphon 100.0 1.4E-32 3.1E-37 207.3 11.7 177 1-184 2-238 (258)
327 PRK10789 putative multidrug tr 100.0 5.7E-33 1.2E-37 246.9 11.0 159 22-184 327-535 (569)
328 COG1132 MdlB ABC-type multidru 100.0 9.8E-33 2.1E-37 245.2 12.3 171 6-184 329-549 (567)
329 COG4172 ABC-type uncharacteriz 100.0 8.8E-33 1.9E-37 230.4 10.7 178 4-185 275-514 (534)
330 TIGR01193 bacteriocin_ABC ABC- 100.0 1.6E-32 3.5E-37 249.3 13.3 170 6-184 474-694 (708)
331 PRK11147 ABC transporter ATPas 100.0 1.6E-32 3.5E-37 246.7 12.8 162 5-178 3-233 (635)
332 KOG0058|consensus 100.0 1.1E-32 2.5E-37 242.9 11.3 175 4-184 464-688 (716)
333 TIGR00955 3a01204 The Eye Pigm 100.0 1.6E-32 3.5E-37 246.0 12.0 161 21-184 36-253 (617)
334 PRK13541 cytochrome c biogenes 100.0 1.7E-32 3.6E-37 213.5 9.2 154 6-168 2-192 (195)
335 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.4E-32 3E-37 222.4 8.6 152 23-178 14-218 (255)
336 KOG0055|consensus 100.0 2.4E-32 5.1E-37 252.2 11.1 175 4-185 349-574 (1228)
337 COG4172 ABC-type uncharacteriz 100.0 5.6E-32 1.2E-36 225.6 10.5 181 1-184 2-244 (534)
338 COG4987 CydC ABC-type transpor 100.0 3.4E-32 7.3E-37 233.3 9.2 173 5-184 336-558 (573)
339 PLN03232 ABC transporter C fam 100.0 7.4E-32 1.6E-36 260.2 12.7 172 6-184 1235-1455(1495)
340 PLN03130 ABC transporter C fam 100.0 9.8E-32 2.1E-36 260.2 13.0 173 5-184 1237-1458(1622)
341 PF00488 MutS_V: MutS domain V 100.0 3.8E-31 8.3E-36 211.5 12.8 176 3-178 9-185 (235)
342 TIGR02857 CydD thiol reductant 100.0 2E-31 4.4E-36 235.0 12.1 160 5-171 320-529 (529)
343 COG4618 ArpD ABC-type protease 100.0 1.4E-31 3.1E-36 228.1 10.0 162 21-185 347-558 (580)
344 cd00267 ABC_ATPase ABC (ATP-bi 100.0 6.4E-31 1.4E-35 197.8 12.4 143 23-175 12-157 (157)
345 TIGR00956 3a01205 Pleiotropic 100.0 2.4E-31 5.2E-36 255.0 12.1 159 22-183 775-989 (1394)
346 PTZ00243 ABC transporter; Prov 100.0 4.4E-31 9.6E-36 255.1 13.3 172 6-184 1309-1530(1560)
347 PTZ00265 multidrug resistance 100.0 3.4E-31 7.5E-36 254.5 11.8 165 6-174 383-655 (1466)
348 smart00534 MUTSac ATPase domai 100.0 1.8E-30 3.8E-35 200.8 13.1 145 38-182 1-145 (185)
349 PLN03073 ABC transporter F fam 100.0 7.4E-31 1.6E-35 237.9 12.5 154 22-181 189-425 (718)
350 COG1101 PhnK ABC-type uncharac 100.0 2.3E-31 5.1E-36 206.1 7.7 175 8-183 4-234 (263)
351 PLN03140 ABC transporter G fam 100.0 1.2E-30 2.5E-35 250.3 14.3 158 23-183 893-1106(1470)
352 PRK05399 DNA mismatch repair p 100.0 4.3E-30 9.2E-35 236.6 17.4 177 3-180 574-751 (854)
353 PLN03232 ABC transporter C fam 100.0 2.5E-31 5.4E-36 256.5 9.6 159 23-184 630-825 (1495)
354 PTZ00243 ABC transporter; Prov 100.0 3.3E-31 7.1E-36 256.0 9.8 160 22-184 672-867 (1560)
355 TIGR00957 MRP_assoc_pro multi 100.0 1.1E-30 2.5E-35 252.3 13.4 173 5-184 1284-1505(1522)
356 PTZ00265 multidrug resistance 100.0 8.6E-31 1.9E-35 251.8 12.2 175 6-184 1166-1449(1466)
357 PRK13409 putative ATPase RIL; 100.0 6.3E-31 1.4E-35 234.2 10.4 147 23-173 87-286 (590)
358 TIGR01271 CFTR_protein cystic 100.0 1.2E-30 2.6E-35 251.6 12.9 172 6-184 1218-1437(1490)
359 PLN03130 ABC transporter C fam 100.0 4.7E-31 1E-35 255.5 9.5 174 6-184 615-825 (1622)
360 TIGR01271 CFTR_protein cystic 100.0 4.4E-31 9.5E-36 254.6 8.7 159 23-184 439-633 (1490)
361 COG0488 Uup ATPase components 100.0 1.4E-30 3.1E-35 228.2 11.0 150 23-179 335-516 (530)
362 PRK00409 recombination and DNA 100.0 9.5E-30 2.1E-34 232.2 16.4 172 3-179 298-470 (782)
363 TIGR00954 3a01203 Peroxysomal 100.0 2.3E-30 5E-35 233.5 11.9 144 23-172 465-652 (659)
364 TIGR00957 MRP_assoc_pro multi 100.0 7.1E-31 1.5E-35 253.7 9.1 161 23-184 651-847 (1522)
365 TIGR02868 CydC thiol reductant 100.0 8.4E-31 1.8E-35 231.0 8.8 145 6-158 335-528 (529)
366 TIGR00956 3a01205 Pleiotropic 100.0 2.3E-30 5.1E-35 248.2 10.8 161 22-184 73-297 (1394)
367 cd03283 ABC_MutS-like MutS-lik 100.0 5.7E-29 1.2E-33 194.5 16.3 161 7-174 1-163 (199)
368 TIGR01070 mutS1 DNA mismatch r 100.0 1.7E-29 3.6E-34 231.9 15.3 176 3-179 560-735 (840)
369 COG0249 MutS Mismatch repair A 100.0 3.6E-29 7.7E-34 228.4 15.7 177 6-183 578-754 (843)
370 cd03281 ABC_MSH5_euk MutS5 hom 100.0 1.2E-28 2.6E-33 194.5 15.8 172 7-179 1-176 (213)
371 KOG0059|consensus 100.0 9.4E-30 2E-34 235.5 10.4 157 25-184 580-784 (885)
372 cd03271 ABC_UvrA_II The excisi 100.0 1E-28 2.2E-33 200.0 14.9 100 81-182 151-261 (261)
373 KOG0055|consensus 100.0 1E-29 2.2E-34 234.9 10.0 174 5-184 987-1210(1228)
374 PLN03140 ABC transporter G fam 100.0 7.4E-30 1.6E-34 244.8 8.7 161 22-184 177-424 (1470)
375 COG4778 PhnL ABC-type phosphon 100.0 3.2E-29 6.9E-34 188.3 8.7 166 5-173 4-227 (235)
376 cd03278 ABC_SMC_barmotin Barmo 100.0 6E-29 1.3E-33 194.1 10.6 139 27-173 14-190 (197)
377 COG4133 CcmA ABC-type transpor 100.0 7.3E-29 1.6E-33 188.6 9.9 139 18-158 10-189 (209)
378 KOG0061|consensus 100.0 5E-29 1.1E-33 222.7 10.5 161 22-184 42-257 (613)
379 COG4136 ABC-type uncharacteriz 100.0 3E-29 6.6E-34 185.1 6.5 140 21-162 13-199 (213)
380 COG4167 SapF ABC-type antimicr 100.0 2.6E-28 5.7E-33 185.4 10.6 179 4-185 3-237 (267)
381 TIGR01069 mutS2 MutS2 family p 100.0 1.6E-27 3.5E-32 217.2 16.4 170 4-178 294-464 (771)
382 KOG0062|consensus 100.0 1.6E-28 3.5E-33 209.6 7.9 152 21-177 91-274 (582)
383 KOG0056|consensus 100.0 1.7E-28 3.8E-33 208.8 8.0 161 21-185 549-759 (790)
384 KOG0054|consensus 99.9 6E-28 1.3E-32 226.9 8.3 175 5-184 518-728 (1381)
385 cd03279 ABC_sbcCD SbcCD and ot 99.9 2.1E-27 4.5E-32 187.3 8.8 160 5-176 5-211 (213)
386 cd03274 ABC_SMC4_euk Eukaryoti 99.9 3.2E-27 7E-32 186.3 9.3 143 22-173 16-204 (212)
387 cd03227 ABC_Class2 ABC-type Cl 99.9 2.7E-26 5.9E-31 173.8 11.5 129 25-173 12-155 (162)
388 PF00005 ABC_tran: ABC transpo 99.9 1.5E-26 3.2E-31 169.7 9.3 100 26-126 1-137 (137)
389 COG4138 BtuD ABC-type cobalami 99.9 1.2E-27 2.6E-32 180.6 3.5 161 23-185 12-219 (248)
390 KOG0927|consensus 99.9 1.2E-26 2.7E-31 199.1 9.3 157 22-183 87-305 (614)
391 TIGR00630 uvra excinuclease AB 99.9 2.9E-25 6.3E-30 204.8 15.4 102 82-185 811-923 (924)
392 KOG0054|consensus 99.9 1.3E-25 2.9E-30 211.2 13.2 175 3-184 1136-1359(1381)
393 PRK00349 uvrA excinuclease ABC 99.9 4.1E-25 9E-30 204.2 13.9 101 82-184 813-924 (943)
394 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.6E-25 5.7E-30 178.1 10.9 79 92-173 152-235 (243)
395 KOG0927|consensus 99.9 1.5E-25 3.2E-30 192.5 8.7 161 12-177 386-585 (614)
396 COG5265 ATM1 ABC-type transpor 99.9 7.6E-26 1.7E-30 189.6 6.2 160 21-184 274-483 (497)
397 cd03240 ABC_Rad50 The catalyti 99.9 2.8E-25 6.2E-30 174.2 8.4 140 31-173 18-197 (204)
398 COG1129 MglA ABC-type sugar tr 99.9 8.6E-25 1.9E-29 188.7 12.0 168 14-184 262-487 (500)
399 KOG0219|consensus 99.9 1.6E-25 3.6E-30 198.1 7.7 180 5-184 614-793 (902)
400 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.8E-24 4E-29 168.9 10.6 144 26-175 12-192 (198)
401 PRK00635 excinuclease ABC subu 99.9 3.8E-24 8.1E-29 205.8 14.8 101 82-184 792-903 (1809)
402 KOG0220|consensus 99.9 3.5E-24 7.7E-29 187.5 10.7 174 6-181 592-765 (867)
403 cd03273 ABC_SMC2_euk Eukaryoti 99.9 5.4E-24 1.2E-28 171.7 9.6 80 90-172 158-242 (251)
404 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.1E-23 2.4E-28 169.6 10.2 78 94-173 151-233 (247)
405 KOG0065|consensus 99.9 4.1E-24 8.9E-29 198.4 5.8 161 21-184 802-1018(1391)
406 COG4615 PvdE ABC-type sideroph 99.9 3.4E-23 7.3E-28 172.9 6.8 168 5-180 322-530 (546)
407 COG1245 Predicted ATPase, RNas 99.9 6.4E-23 1.4E-27 173.7 7.1 147 24-172 350-530 (591)
408 cd03277 ABC_SMC5_euk Eukaryoti 99.9 1.1E-22 2.5E-27 160.5 7.6 146 27-175 15-211 (213)
409 KOG2355|consensus 99.9 1.7E-22 3.7E-27 156.2 7.9 167 5-181 13-231 (291)
410 COG4170 SapD ABC-type antimicr 99.9 2.2E-22 4.7E-27 156.4 8.3 163 21-184 18-245 (330)
411 KOG0218|consensus 99.9 5.6E-22 1.2E-26 174.1 10.8 172 5-176 799-971 (1070)
412 KOG0062|consensus 99.9 2.4E-22 5.1E-27 172.0 6.8 149 24-178 378-559 (582)
413 KOG0066|consensus 99.8 3.9E-22 8.4E-27 168.7 4.1 151 22-177 276-488 (807)
414 COG4178 ABC-type uncharacteriz 99.8 5.8E-21 1.3E-25 168.1 11.0 148 21-172 404-587 (604)
415 cd03239 ABC_SMC_head The struc 99.8 5E-21 1.1E-25 147.2 9.2 138 30-173 16-172 (178)
416 KOG0066|consensus 99.8 3.6E-21 7.8E-26 162.9 7.9 150 21-176 598-779 (807)
417 COG1245 Predicted ATPase, RNas 99.8 1.3E-20 2.7E-25 159.8 5.7 136 33-172 97-287 (591)
418 PRK00635 excinuclease ABC subu 99.8 6.3E-20 1.4E-24 177.0 10.9 101 83-185 1683-1794(1809)
419 COG0178 UvrA Excinuclease ATPa 99.8 8.8E-20 1.9E-24 163.1 10.1 99 85-185 808-917 (935)
420 COG2401 ABC-type ATPase fused 99.8 7E-20 1.5E-24 154.0 8.7 155 22-177 395-588 (593)
421 cd03241 ABC_RecN RecN ATPase i 99.8 3.8E-19 8.2E-24 145.4 11.9 76 97-175 169-249 (276)
422 COG3845 ABC-type uncharacteriz 99.8 2E-19 4.3E-24 153.6 9.1 160 23-184 271-489 (501)
423 KOG0060|consensus 99.8 7.4E-19 1.6E-23 152.4 11.7 147 22-173 447-641 (659)
424 KOG0217|consensus 99.8 2.3E-18 5E-23 155.9 9.4 175 5-179 866-1042(1125)
425 KOG0064|consensus 99.7 3.1E-18 6.6E-23 147.5 7.2 145 22-171 494-681 (728)
426 PRK00349 uvrA excinuclease ABC 99.7 6.5E-18 1.4E-22 156.7 7.1 100 83-184 473-582 (943)
427 TIGR00630 uvra excinuclease AB 99.7 7.7E-18 1.7E-22 155.9 7.4 100 83-184 471-580 (924)
428 KOG0221|consensus 99.7 3.4E-18 7.3E-23 148.4 4.3 155 6-162 570-727 (849)
429 KOG0065|consensus 99.7 8.7E-18 1.9E-22 156.7 5.3 161 23-184 128-348 (1391)
430 cd03242 ABC_RecF RecF is a rec 99.6 1E-15 2.2E-20 124.8 9.8 75 96-176 181-269 (270)
431 PF02463 SMC_N: RecF/RecN/SMC 99.6 1.2E-14 2.6E-19 114.7 9.5 71 97-172 135-212 (220)
432 COG1193 Mismatch repair ATPase 99.6 4.2E-15 9.1E-20 134.9 7.3 164 3-175 290-454 (753)
433 KOG0063|consensus 99.6 9.7E-15 2.1E-19 123.5 7.8 150 22-173 348-532 (592)
434 PRK13695 putative NTPase; Prov 99.5 9.2E-14 2E-18 106.1 8.6 138 38-179 2-156 (174)
435 TIGR02858 spore_III_AA stage I 99.5 1.6E-13 3.4E-18 111.9 8.2 53 114-175 193-259 (270)
436 COG3910 Predicted ATPase [Gene 99.5 3.1E-13 6.7E-18 103.5 8.5 140 31-175 33-205 (233)
437 cd01124 KaiC KaiC is a circadi 99.4 7E-13 1.5E-17 101.6 8.0 134 38-173 1-164 (187)
438 TIGR00634 recN DNA repair prot 99.3 3.2E-12 6.9E-17 114.1 6.7 76 97-175 439-519 (563)
439 PRK06067 flagellar accessory p 99.3 2.1E-11 4.5E-16 97.3 10.5 143 32-176 21-183 (234)
440 TIGR00618 sbcc exonuclease Sbc 99.3 4.6E-12 1E-16 120.1 7.1 84 89-174 941-1036(1042)
441 PRK08533 flagellar accessory p 99.3 2.7E-11 5.9E-16 96.7 9.5 123 32-157 20-161 (230)
442 PHA02562 46 endonuclease subun 99.3 6.2E-12 1.3E-16 111.9 6.0 80 93-176 463-555 (562)
443 COG0178 UvrA Excinuclease ATPa 99.2 1.8E-11 3.9E-16 110.4 8.1 98 86-185 468-575 (935)
444 PRK10869 recombination and rep 99.2 1.3E-11 2.8E-16 109.8 6.4 74 98-174 430-508 (553)
445 PF13304 AAA_21: AAA domain; P 99.2 1.3E-11 2.8E-16 96.6 5.2 64 95-160 233-300 (303)
446 PRK03918 chromosome segregatio 99.2 1.8E-11 4E-16 114.1 6.5 81 91-173 781-868 (880)
447 cd01128 rho_factor Transcripti 99.2 3.6E-11 7.9E-16 97.0 7.0 76 97-177 128-212 (249)
448 KOG0063|consensus 99.2 3.6E-11 7.8E-16 102.2 6.4 90 79-172 194-287 (592)
449 cd01120 RecA-like_NTPases RecA 99.2 9.2E-11 2E-15 86.9 7.7 120 38-158 1-136 (165)
450 PRK01156 chromosome segregatio 99.2 7.8E-11 1.7E-15 110.2 7.7 80 93-172 796-883 (895)
451 TIGR02788 VirB11 P-type DNA tr 99.1 2.3E-11 5E-16 101.0 3.2 136 29-182 137-276 (308)
452 PRK07721 fliI flagellum-specif 99.1 3.7E-10 8E-15 97.8 10.4 157 23-183 146-339 (438)
453 cd01131 PilT Pilus retraction 99.1 4.6E-10 1E-14 87.6 9.0 116 38-171 3-121 (198)
454 cd00820 PEPCK_HprK Phosphoenol 99.1 1.7E-10 3.7E-15 81.4 4.7 34 23-56 2-35 (107)
455 PRK10246 exonuclease subunit S 99.1 2.6E-10 5.7E-15 108.2 7.0 80 92-173 943-1032(1047)
456 TIGR02168 SMC_prok_B chromosom 99.1 2E-10 4.4E-15 109.2 6.0 79 91-172 1082-1165(1179)
457 TIGR00606 rad50 rad50. This fa 99.0 8E-10 1.7E-14 107.1 9.1 77 91-167 1192-1279(1311)
458 PRK06793 fliI flagellum-specif 99.0 4.4E-10 9.5E-15 96.9 5.9 148 24-180 145-304 (432)
459 PTZ00132 GTP-binding nuclear p 99.0 3.5E-10 7.6E-15 88.9 4.4 42 103-145 157-204 (215)
460 COG4637 Predicted ATPase [Gene 99.0 4.9E-09 1.1E-13 86.1 10.1 70 98-170 270-343 (373)
461 smart00382 AAA ATPases associa 98.9 1.2E-08 2.6E-13 72.8 9.4 114 36-157 2-124 (148)
462 PRK13830 conjugal transfer pro 98.9 1.9E-09 4.2E-14 100.0 6.4 64 114-179 651-725 (818)
463 TIGR02169 SMC_prok_A chromosom 98.9 1.3E-09 2.8E-14 103.9 5.1 80 92-174 1068-1152(1164)
464 PRK02224 chromosome segregatio 98.8 3.7E-09 8E-14 98.8 5.9 78 94-173 777-868 (880)
465 cd01125 repA Hexameric Replica 98.8 5.9E-09 1.3E-13 83.4 5.5 119 36-158 1-158 (239)
466 TIGR01420 pilT_fam pilus retra 98.8 3.1E-08 6.7E-13 83.6 8.1 119 34-169 120-240 (343)
467 cd02023 UMPK Uridine monophosp 98.7 5.4E-09 1.2E-13 81.2 2.5 89 38-129 1-112 (198)
468 TIGR02655 circ_KaiC circadian 98.7 3.3E-09 7.2E-14 93.2 1.0 25 32-56 17-41 (484)
469 PRK00064 recF recombination pr 98.7 2.9E-08 6.3E-13 84.3 6.7 76 96-176 271-359 (361)
470 PF09818 ABC_ATPase: Predicted 98.7 4.7E-08 1E-12 83.7 7.8 145 31-177 240-417 (448)
471 PF13555 AAA_29: P-loop contai 98.7 2.2E-08 4.7E-13 63.7 4.0 31 29-59 15-46 (62)
472 cd01130 VirB11-like_ATPase Typ 98.7 2.2E-08 4.8E-13 77.3 4.9 117 27-158 16-134 (186)
473 PRK14722 flhF flagellar biosyn 98.7 2.3E-07 5E-12 78.9 11.4 101 24-134 125-232 (374)
474 PRK06995 flhF flagellar biosyn 98.7 1.2E-07 2.6E-12 83.0 9.8 55 25-80 245-303 (484)
475 TIGR03238 dnd_assoc_3 dnd syst 98.7 7.7E-09 1.7E-13 89.8 2.4 32 23-54 19-50 (504)
476 COG3044 Predicted ATPase of th 98.6 7.5E-08 1.6E-12 81.7 6.9 146 31-177 238-412 (554)
477 COG0419 SbcC ATPase involved i 98.6 1.1E-07 2.5E-12 89.4 7.6 77 93-173 810-897 (908)
478 TIGR00416 sms DNA repair prote 98.6 2.9E-07 6.4E-12 80.4 9.3 138 32-175 90-247 (454)
479 PRK13764 ATPase; Provisional 98.6 4.7E-07 1E-11 81.2 10.0 120 34-177 255-393 (602)
480 TIGR01026 fliI_yscN ATPase Fli 98.6 1.3E-07 2.8E-12 82.1 6.2 157 23-183 151-344 (440)
481 TIGR03881 KaiC_arch_4 KaiC dom 98.5 7.2E-07 1.6E-11 70.7 9.8 26 32-57 16-41 (229)
482 TIGR00152 dephospho-CoA kinase 98.5 5.4E-08 1.2E-12 75.1 2.8 121 38-174 1-133 (188)
483 PRK04296 thymidine kinase; Pro 98.5 1.5E-06 3.3E-11 67.3 10.8 124 36-172 2-140 (190)
484 PLN03210 Resistant to P. syrin 98.5 2.5E-07 5.4E-12 89.0 7.5 28 29-56 200-227 (1153)
485 PRK09183 transposase/IS protei 98.5 5E-07 1.1E-11 73.4 8.1 35 25-60 92-126 (259)
486 cd01121 Sms Sms (bacterial rad 98.5 1.7E-06 3.8E-11 73.7 10.5 136 32-173 78-233 (372)
487 PRK14721 flhF flagellar biosyn 98.4 3.7E-06 8E-11 72.6 12.2 93 33-134 188-286 (420)
488 cd01122 GP4d_helicase GP4d_hel 98.4 3.3E-06 7.2E-11 68.5 11.2 36 23-58 17-52 (271)
489 TIGR03880 KaiC_arch_3 KaiC dom 98.4 1.3E-06 2.8E-11 69.1 8.1 138 32-172 12-177 (224)
490 PRK13891 conjugal transfer pro 98.4 3.4E-06 7.4E-11 78.9 12.0 53 109-163 680-735 (852)
491 cd00009 AAA The AAA+ (ATPases 98.4 1.7E-06 3.8E-11 62.1 8.1 25 35-59 18-42 (151)
492 PRK06731 flhF flagellar biosyn 98.4 6.9E-06 1.5E-10 67.1 12.3 108 24-138 56-175 (270)
493 cd01394 radB RadB. The archaea 98.4 2.8E-06 6.1E-11 66.8 9.4 141 32-173 15-186 (218)
494 TIGR02524 dot_icm_DotB Dot/Icm 98.4 2.5E-06 5.4E-11 72.4 9.2 111 34-160 132-248 (358)
495 PRK13898 type IV secretion sys 98.4 4.8E-06 1E-10 77.5 11.8 49 114-163 641-690 (800)
496 PF13476 AAA_23: AAA domain; P 98.4 5E-07 1.1E-11 69.3 4.4 33 27-60 11-43 (202)
497 PRK11823 DNA repair protein Ra 98.3 4.2E-06 9.1E-11 73.0 10.4 135 32-172 76-230 (446)
498 TIGR00235 udk uridine kinase. 98.3 6.2E-07 1.3E-11 70.3 4.0 40 33-73 3-42 (207)
499 TIGR00611 recf recF protein. A 98.3 1.3E-06 2.8E-11 74.3 5.5 56 98-158 275-340 (365)
500 TIGR00767 rho transcription te 98.3 3.5E-06 7.7E-11 72.1 7.9 31 28-58 160-190 (415)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-47 Score=294.04 Aligned_cols=173 Identities=12% Similarity=0.097 Sum_probs=145.0
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH--------------HHH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS--------------VFL 62 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i--------------~~~ 62 (185)
.++++|+...| +...||++||+++++||+++|+||+||||||||||| |.| .++
T Consensus 2 mi~i~~l~K~f-----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R 76 (240)
T COG1126 2 MIEIKNLSKSF-----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR 76 (240)
T ss_pred eEEEEeeeEEe-----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHH
Confidence 46677776655 447899999999999999999999999999999999 332 235
Q ss_pred HhhCceecCCCCCcc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 63 AQIGCFVPCDSATIS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 63 ~~~g~~v~~~~~~~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
.++| +|||....++ .+.++|+++|+.+..+.+|++||||||||++|||+| .+|
T Consensus 77 ~~vG-mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 77 RKVG-MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred HhcC-eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence 6778 9999986665 255778999999999999999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
+++|+|||||.+||.-..+.... +..+++ .|.|++++||+ ..+.+.|||+++|++|+++.+++++++
T Consensus 156 ~vmLFDEPTSALDPElv~EVL~v-m~~LA~-eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 156 KVMLFDEPTSALDPELVGEVLDV-MKDLAE-EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred CEEeecCCcccCCHHHHHHHHHH-HHHHHH-cCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 99999999555554444444343 578887 69999999999 778889999999999999999987653
No 2
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-45 Score=291.18 Aligned_cols=173 Identities=21% Similarity=0.239 Sum_probs=144.6
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH----------Hhh
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL----------AQI 65 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~----------~~~ 65 (185)
+.++++|+...| +++++++||||++++|++++|+||||||||||+|+| |.|.+. ..+
T Consensus 3 ~~i~v~nl~v~y-----~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~I 77 (254)
T COG1121 3 PMIEVENLTVSY-----GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRI 77 (254)
T ss_pred cEEEEeeeEEEE-----CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeE
Confidence 456677766544 223699999999999999999999999999999999 555442 235
Q ss_pred CceecCCC---CCcc---------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 66 GCFVPCDS---ATIS---------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 66 g~~v~~~~---~~~~---------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
| ||||.. ..+| .++++++++|+.+..++++++|||||+||+.||||| +
T Consensus 78 g-YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~ 156 (254)
T COG1121 78 G-YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ 156 (254)
T ss_pred E-EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc
Confidence 6 999965 2222 367889999999999999999999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
+|++++|||||+|.|+.....+.++ +..++++ |+||+++||| ..+.+++|+++.+. +++.+.|+++++
T Consensus 157 ~p~lllLDEP~~gvD~~~~~~i~~l-L~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 157 NPDLLLLDEPFTGVDVAGQKEIYDL-LKELRQE-GKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHH-HHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 9999999999888888776666664 4888885 9999999999 88999999999995 688899888763
No 3
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=9.5e-45 Score=290.67 Aligned_cols=175 Identities=16% Similarity=0.199 Sum_probs=141.1
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQ 64 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~ 64 (185)
.++++|+...| +++++++|+||++++|++++|+||||||||||||+| |.|.+ .++
T Consensus 2 ~L~~~~ls~~y-----~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk 76 (258)
T COG1120 2 MLEVENLSFGY-----GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAK 76 (258)
T ss_pred eeEEEEEEEEE-----CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhh
Confidence 35566665444 358899999999999999999999999999999999 33322 233
Q ss_pred hCceecCCC---CCcc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 65 IGCFVPCDS---ATIS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 65 ~g~~v~~~~---~~~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
..+|+||.. +.++ .+++.++.+++.+..++.+.+||||||||+.|||++ ++
T Consensus 77 ~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~ 156 (258)
T COG1120 77 KLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQE 156 (258)
T ss_pred hEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcC
Confidence 334999985 2222 255668999999999999999999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
|+++||||||+.+|......+.+. ++.+++++|.|+|+++|| +.+.++||++++|++|++.++|.++++
T Consensus 157 ~~iLLLDEPTs~LDi~~Q~evl~l-l~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 157 TPILLLDEPTSHLDIAHQIEVLEL-LRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred CCEEEeCCCccccCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence 999999999444444333333343 577776679999999999 889999999999999999999998764
No 4
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-44 Score=281.30 Aligned_cols=167 Identities=19% Similarity=0.223 Sum_probs=142.7
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH--------hhCce
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA--------QIGCF 68 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~--------~~g~~ 68 (185)
.+++++++..|- ...+++|+||++.+||+++|+||+|||||||||+| |.|.+.+ .++ |
T Consensus 3 ~l~i~~v~~~f~-----~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~-~ 76 (248)
T COG1116 3 LLEIEGVSKSFG-----GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIG-Y 76 (248)
T ss_pred eEEEEeeEEEeC-----ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEE-E
Confidence 455666655552 26799999999999999999999999999999999 5544432 345 9
Q ss_pred ecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeC
Q psy5297 69 VPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDE 123 (185)
Q Consensus 69 v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDE 123 (185)
+||++..++ .+.++++.+|+.+..+++|.+||||||||++|||++ .+|+++||||
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE 156 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE 156 (248)
T ss_pred EeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999986665 366788999999999999999999999999999999 9999999999
Q ss_pred CCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceee--eeEEE
Q psy5297 124 LGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRN--VHESK 178 (185)
Q Consensus 124 P~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~--g~i~~ 178 (185)
||+.+|.+....+.+.+++-+.+ .+.||+++||| .|+..++||+++|.+ |++..
T Consensus 157 PFgALDalTR~~lq~~l~~lw~~-~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~ 213 (248)
T COG1116 157 PFGALDALTREELQDELLRLWEE-TRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGE 213 (248)
T ss_pred CcchhhHHHHHHHHHHHHHHHHh-hCCEEEEEeCCHHHHHhhhCEEEEecCCCcceee
Confidence 99999999988888877666665 79999999999 999999999999999 55543
No 5
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.6e-43 Score=281.68 Aligned_cols=177 Identities=14% Similarity=0.132 Sum_probs=149.7
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH----------------HH
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS----------------VF 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i----------------~~ 61 (185)
++++++...|....++...+++||||+|++|+++||+|++|||||||+|+| |.| ..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 567777665654322335699999999999999999999999999999999 333 33
Q ss_pred HHhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 62 LAQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 62 ~~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
+.++| ++||+...++ ++.++++.+|+.+..+++|++||||||||++||||+ .+|
T Consensus 82 R~~IG-MIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P 160 (339)
T COG1135 82 RQKIG-MIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP 160 (339)
T ss_pred Hhhcc-EEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence 56778 9999885544 366788999999999999999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
++||.|||||.+||....++.+++ +.++++.|.||+++||. +-+.++|||+.+|++|+++++|+..+
T Consensus 161 ~iLL~DEaTSALDP~TT~sIL~LL-~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~ 228 (339)
T COG1135 161 KILLCDEATSALDPETTQSILELL-KDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSE 228 (339)
T ss_pred CEEEecCccccCChHHHHHHHHHH-HHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHH
Confidence 999999998888777777777654 88888789999999999 56678999999999999999998654
No 6
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-43 Score=276.64 Aligned_cols=172 Identities=19% Similarity=0.219 Sum_probs=150.1
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~ 64 (185)
++++|+...| +++.+++|+||+|++|++++++||+||||||+||+| |.| .++.+
T Consensus 2 I~~~nvsk~y-----~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~ 76 (309)
T COG1125 2 IEFENVSKRY-----GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK 76 (309)
T ss_pred ceeeeeehhc-----CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHh
Confidence 4566666555 347899999999999999999999999999999999 433 34677
Q ss_pred hCceecCCCCCcc------------------------hhhHHHhhcCcc--cccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297 65 IGCFVPCDSATIS------------------------VVDQIFTRVGAA--DSQYRGISTFMMEMKETATVIKKC-TENS 117 (185)
Q Consensus 65 ~g~~v~~~~~~~~------------------------~~~~~l~~~~l~--~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ 117 (185)
+| ||-|....++ +++++++.+|++ ++.+++|++|||||+||+.+|||+ .+|+
T Consensus 77 IG-YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ 155 (309)
T COG1125 77 IG-YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPP 155 (309)
T ss_pred hh-hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCC
Confidence 88 8888764444 467888999997 478999999999999999999999 9999
Q ss_pred EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
++||||||+.+||..+..+.+.+ ..+.++.++||+++||| .|+.+++||+.+|++|+++..++|++
T Consensus 156 ilLMDEPFgALDpI~R~~lQ~e~-~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~ 222 (309)
T COG1125 156 ILLMDEPFGALDPITRKQLQEEI-KELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDE 222 (309)
T ss_pred eEeecCCccccChhhHHHHHHHH-HHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHH
Confidence 99999999999999999888876 67776689999999999 99999999999999999999998765
No 7
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.6e-42 Score=271.97 Aligned_cols=175 Identities=17% Similarity=0.145 Sum_probs=148.6
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH---------------
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS--------------- 59 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i--------------- 59 (185)
.+.+++++++..+ +.+.|++|+||++++||+++|+||+|+|||||||+| |.|
T Consensus 6 ~~~I~vr~v~~~f-----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~ 80 (263)
T COG1127 6 EPLIEVRGVTKSF-----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL 80 (263)
T ss_pred cceEEEeeeeeec-----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHH
Confidence 4567777777665 568899999999999999999999999999999999 333
Q ss_pred -HHHHhhCceecCCCCCcc---hhhH----------------------HHhhcCcccc-cccCcCccHHHHHHHHHHHHh
Q psy5297 60 -VFLAQIGCFVPCDSATIS---VVDQ----------------------IFTRVGAADS-QYRGISTFMMEMKETATVIKK 112 (185)
Q Consensus 60 -~~~~~~g~~v~~~~~~~~---~~~~----------------------~l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~ 112 (185)
.++.++| ++||....++ ++++ -++.+|+... .++.|++|||||++|+++|||
T Consensus 81 ~~ir~r~G-vlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARA 159 (263)
T COG1127 81 YEIRKRMG-VLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARA 159 (263)
T ss_pred HHHHhhee-EEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHH
Confidence 2345677 9999885444 2222 2466788777 899999999999999999999
Q ss_pred C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+ .+|+++++||||+|+||.....+.++| ..+++.-+.|++++||| ..+..+|||++++.+|+|.++|++++
T Consensus 160 ialdPell~~DEPtsGLDPI~a~~~~~LI-~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 160 IALDPELLFLDEPTSGLDPISAGVIDELI-RELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HhcCCCEEEecCCCCCCCcchHHHHHHHH-HHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 9 999999999999999999877777755 77777679999999999 89999999999999999999998865
No 8
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.9e-42 Score=272.59 Aligned_cols=169 Identities=17% Similarity=0.187 Sum_probs=132.1
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH------------------------HH
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS------------------------VF 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i------------------------~~ 61 (185)
++++++++.|-.-. ....+|+++||++++||+++|+||+||||||||++||.+ .+
T Consensus 2 i~~~~v~k~y~~~~-~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 2 IELKNVSKIYGLGG-EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred cEEeeeEEEeccCC-cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 34555555443211 124699999999999999999999999999999999332 12
Q ss_pred -HHhhCceecCCCCCcc---h---------------------hhHHHhhcCcccccc-cCcCccHHHHHHHHHHHHhC-C
Q psy5297 62 -LAQIGCFVPCDSATIS---V---------------------VDQIFTRVGAADSQY-RGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 62 -~~~~g~~v~~~~~~~~---~---------------------~~~~l~~~~l~~~~~-~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
+.++| ||||....++ + +..+++.+|+.+..+ ++|++||||||||++||||+ .
T Consensus 81 R~~~iG-fvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~ 159 (226)
T COG1136 81 RRKKIG-FVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN 159 (226)
T ss_pred HHHhEE-EECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence 34567 9999884443 2 345567779987766 88999999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEE
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHES 177 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~ 177 (185)
+|+++|.||||.++|......+... +..++++.|.|+|++|||.+++..|||++.+++|++.
T Consensus 160 ~P~iilADEPTgnLD~~t~~~V~~l-l~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 160 NPKIILADEPTGNLDSKTAKEVLEL-LRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred CCCeEEeeCccccCChHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 9999999999555555554444443 4677665799999999999999999999999999953
No 9
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-43 Score=270.87 Aligned_cols=174 Identities=16% Similarity=0.180 Sum_probs=149.9
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQ 64 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~ 64 (185)
.+.+.++.+.| +++.|+++|||++++||+++|+|||||||||.+.++ |.|.+ +++
T Consensus 4 ~L~a~~l~K~y-----~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RAr 78 (243)
T COG1137 4 TLVAENLAKSY-----KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR 78 (243)
T ss_pred EEEehhhhHhh-----CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhh
Confidence 45566665555 457899999999999999999999999999999999 44432 344
Q ss_pred hC-ceecCCCCC---cc-----------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 65 IG-CFVPCDSAT---IS-----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 65 ~g-~~v~~~~~~---~~-----------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
.| +|+||++.- ++ .++++++.|++.+..+.+..+||||+|+|+.|||+| .+|
T Consensus 79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred cCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCC
Confidence 43 399998832 22 255788899999999999999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
+++||||||+|.||.....+.+.+ .+|+. +|..|+++.|+ .+...+|||.+++.+|++.++|+++++
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI-~~L~~-rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRII-KHLKD-RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHH-HHHHh-CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHH
Confidence 999999999999999999888855 88887 79999999999 999999999999999999999998764
No 10
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.7e-42 Score=282.58 Aligned_cols=171 Identities=19% Similarity=0.232 Sum_probs=142.0
Q ss_pred EEEcccCCceeeecCC-ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH------------HHHHh
Q psy5297 6 LVLNQCRHPIVELQGG-VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS------------VFLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~-~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i------------~~~~~ 64 (185)
+++++++..| + .+.+++||||++++|++++|+||||||||||||+| |.| .++.+
T Consensus 5 i~~~~l~k~~-----~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ 79 (293)
T COG1131 5 IEVRNLTKKY-----GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRR 79 (293)
T ss_pred eeecceEEEe-----CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhh
Confidence 4455555544 3 47899999999999999999999999999999999 332 23456
Q ss_pred hCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEE
Q psy5297 65 IGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLV 119 (185)
Q Consensus 65 ~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ll 119 (185)
+| |+||.+..++ .++++++.+++.+..++++++||+|||||+.||+++ .+|+++
T Consensus 80 ig-y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~ll 158 (293)
T COG1131 80 IG-YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELL 158 (293)
T ss_pred eE-EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 77 9999884333 255688899998867888999999999999999999 999999
Q ss_pred EEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 120 IIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 120 llDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
||||||+|+|+.....+.+.+ +.++++.+.||+++||. .++..+||++++|++|++++.++.+
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l-~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~ 222 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELL-RELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPE 222 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHH-HHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 999998888887766666644 77776434899999998 8999999999999999999998654
No 11
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-43 Score=291.31 Aligned_cols=178 Identities=18% Similarity=0.168 Sum_probs=147.1
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------- 61 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------- 61 (185)
|..+.++++++++.| +...+++|+||+|++||+++|+|||||||||+||+| |.|.+
T Consensus 1 ~~~~~l~i~~v~k~y-----g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 1 MPKPALEIRNVSKSF-----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE 75 (352)
T ss_pred CCCceEEEEeeeeec-----CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh
Confidence 345678888887766 347899999999999999999999999999999999 54533
Q ss_pred HHhhCceecCCCCCcc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 62 LAQIGCFVPCDSATIS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 62 ~~~~g~~v~~~~~~~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
.+.+| +|||+...+| ++.++++.+++++..++++++||||||||+++||+| .+
T Consensus 76 kR~ig-~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 76 KRPIG-MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPE 154 (352)
T ss_pred hcccc-eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcC
Confidence 45667 9999986555 355678888999999999999999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
|+++|||||++++|..-+..+... ++.+.++.|.|.|++||| .++..++||+.+|++|++...|+|+++
T Consensus 155 P~vLLLDEPlSaLD~kLR~~mr~E-lk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 155 PKVLLLDEPLSALDAKLREQMRKE-LKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred cchhhhcCcccchhHHHHHHHHHH-HHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHH
Confidence 999999999444433333333333 356666679999999999 999999999999999999999988764
No 12
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-42 Score=267.07 Aligned_cols=176 Identities=14% Similarity=0.131 Sum_probs=147.3
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH----------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS---------------- 59 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i---------------- 59 (185)
..++++++...|. +++.+++||||+|++||+++|+||+|||||||||+| |.|
T Consensus 2 ~~i~~~nl~k~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr 77 (258)
T COG3638 2 MMIEVKNLSKTYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77 (258)
T ss_pred ceEEEeeeeeecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHH
Confidence 3577788776664 357899999999999999999999999999999999 322
Q ss_pred HHHHhhCceecCCCCCcc--------------------------------hhhHHHhhcCcccccccCcCccHHHHHHHH
Q psy5297 60 VFLAQIGCFVPCDSATIS--------------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETA 107 (185)
Q Consensus 60 ~~~~~~g~~v~~~~~~~~--------------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~ 107 (185)
.++.++| |++|.+...+ .+-+.|+++|+.+....+.++|||||+||+
T Consensus 78 ~~r~~iG-mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRV 156 (258)
T COG3638 78 KLRRDIG-MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRV 156 (258)
T ss_pred HHHHhce-eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHH
Confidence 2357788 9999875443 133567888999999999999999999999
Q ss_pred HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
+|||+| ++|+++|.|||.+++||......... ++.++++.|.|+|++.|+ ..+.++|||++-|++|+++++|++.++
T Consensus 157 aIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~-l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el 235 (258)
T COG3638 157 AIARALVQQPKIILADEPVASLDPESAKKVMDI-LKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235 (258)
T ss_pred HHHHHHhcCCCEEecCCcccccChhhHHHHHHH-HHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhh
Confidence 999999 99999999999777666665555554 477777789999999999 777789999999999999999988653
No 13
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.5e-41 Score=279.98 Aligned_cols=176 Identities=18% Similarity=0.194 Sum_probs=143.2
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------ 60 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------ 60 (185)
|..+.++++++...| +...+++|+||++++|++++|+||||||||||+|+| |.+.
T Consensus 3 ~~~~~i~i~~l~k~~-----~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 3 MSVAPIDFRNVEKRY-----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARH 77 (306)
T ss_pred CCCceEEEEeEEEEE-----CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHH
Confidence 344567788877655 236799999999999999999999999999999999 3332
Q ss_pred HHHhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 61 FLAQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 61 ~~~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
++.++| |+||++..+ ++ +.++++.+++.+..++++++||+|||||++||+++ .+
T Consensus 78 ~~~~ig-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 78 ARQRVG-VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVND 156 (306)
T ss_pred HHhcEE-EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCC
Confidence 234567 999987332 21 23556778888888999999999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++||||||+|+|+.....+.+. +..+++ .|.|||++||+ .++.++||++++|++|++++.+++++
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~~-l~~l~~-~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~ 224 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWER-LRSLLA-RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHA 224 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHH-HHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999777777666655554 466665 58999999999 88899999999999999999987654
No 14
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-41 Score=260.13 Aligned_cols=173 Identities=14% Similarity=0.158 Sum_probs=141.5
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------------HH-----------
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------------GV----------- 58 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------------G~----------- 58 (185)
.+.++++++..-| +.+.+|+|||++|+++++++++||+|||||||||++ |.
T Consensus 5 ~~~~~~~~l~~yY-----g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 5 IPAIEVRDLNLYY-----GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred cceeEecceeEEE-----CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 3456666665433 347799999999999999999999999999999999 22
Q ss_pred ----HHHHHhhCceecCCCCCcc--hhhH---------------------HHhhcCc----ccccccCcCccHHHHHHHH
Q psy5297 59 ----SVFLAQIGCFVPCDSATIS--VVDQ---------------------IFTRVGA----ADSQYRGISTFMMEMKETA 107 (185)
Q Consensus 59 ----i~~~~~~g~~v~~~~~~~~--~~~~---------------------~l~~~~l----~~~~~~~~~~lS~g~~q~~ 107 (185)
+.++.++| +|||.+..++ ++++ .++...+ .+.+++....||||||||+
T Consensus 80 ~~d~~~lRr~vG-MVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL 158 (253)
T COG1117 80 KVDVVELRRRVG-MVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL 158 (253)
T ss_pred CCCHHHHHHHhe-eeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH
Confidence 23467888 9999985544 3332 2333333 2456788889999999999
Q ss_pred HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|||++ .+|++||||||||++||.....+.+++ ..|++ ..||+++||+ ..+++++|+..++..|++++.+++++
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi-~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELI-TELKK--KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHH-HHHHh--ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999 999999999999999999988887765 77775 7999999999 88999999999999999999998765
No 15
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=8.7e-41 Score=280.10 Aligned_cols=174 Identities=22% Similarity=0.209 Sum_probs=140.3
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HH
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FL 62 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~ 62 (185)
...++++|+...| +.+.+++|+||++++|++++|+||||||||||+|+| |.+. +.
T Consensus 39 ~~~i~i~nl~k~y-----~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~ 113 (340)
T PRK13536 39 TVAIDLAGVSKSY-----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLAR 113 (340)
T ss_pred ceeEEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHh
Confidence 3345666665544 346799999999999999999999999999999999 3332 22
Q ss_pred HhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297 63 AQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS 117 (185)
Q Consensus 63 ~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ 117 (185)
..+| |+||+...+ ++ ++++++.+++.+..++++++||+|||||++||+++ .+|+
T Consensus 114 ~~ig-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 114 ARIG-VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred ccEE-EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3456 999986322 21 23456778888888999999999999999999999 9999
Q ss_pred EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++.++||++++|++|++++.+++++
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l-~~l~~-~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~ 258 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERL-RSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHA 258 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999998777777666665544 66665 58999999999 88899999999999999999987654
No 16
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=282.32 Aligned_cols=174 Identities=18% Similarity=0.156 Sum_probs=141.6
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQI 65 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~ 65 (185)
.++++|+.+.|-. ..+++|+||++++||+++|+||||||||||||+| |.|.+ .+.+
T Consensus 3 ~i~l~~v~K~yg~-----~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~i 77 (338)
T COG3839 3 ELELKNVRKSFGS-----FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGI 77 (338)
T ss_pred EEEEeeeEEEcCC-----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCE
Confidence 4677777766622 2299999999999999999999999999999999 55544 2455
Q ss_pred CceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297 66 GCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI 120 (185)
Q Consensus 66 g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll 120 (185)
+ +|||++..++ ++.++.+.+++++.+++++++||||||||+++|||+ .+|+++|
T Consensus 78 a-mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L 156 (338)
T COG3839 78 A-MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFL 156 (338)
T ss_pred E-EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEE
Confidence 6 9999985554 245667788999999999999999999999999999 9999999
Q ss_pred EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
||||+|++|..-+..+... +..+.++.+.|+|++||| .|+..++||+.+|++|++...|++.++
T Consensus 157 ~DEPlSnLDa~lR~~mr~e-i~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~el 221 (338)
T COG3839 157 LDEPLSNLDAKLRVLMRSE-IKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221 (338)
T ss_pred ecCchhHhhHHHHHHHHHH-HHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHH
Confidence 9999444433333333333 466777679999999999 999999999999999999999988653
No 17
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-41 Score=274.26 Aligned_cols=161 Identities=18% Similarity=0.139 Sum_probs=137.1
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCCCCCcc---
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCDSATIS--- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~~~~~~--- 77 (185)
..+++||+++|+.||.++|+||||||||||||+| |.|.+ .+++| |++|++..++
T Consensus 15 ~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG-fvFQ~YALF~Hmt 93 (345)
T COG1118 15 FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG-FVFQHYALFPHMT 93 (345)
T ss_pred ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee-EEEechhhcccch
Confidence 5689999999999999999999999999999999 43322 24567 9999984333
Q ss_pred -----------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297 78 -----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG 133 (185)
Q Consensus 78 -----------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~ 133 (185)
.+.++++.+.+++..+++|.+||||||||+++|||+ .+|++|||||||.++|..-.
T Consensus 94 Va~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr 173 (345)
T COG1118 94 VADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 173 (345)
T ss_pred HHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHH
Confidence 355678888889999999999999999999999999 99999999999777666666
Q ss_pred hHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 134 FGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 134 ~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
..+...+ ..+.++.|.|++++||| +++.++|||+++|++|+|...++++++
T Consensus 174 ~~lr~wL-r~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 174 KELRRWL-RKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHH-HHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 6665554 66666579999999999 999999999999999999999988764
No 18
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-41 Score=258.10 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=138.7
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH--------------------HHHHhh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS--------------------VFLAQI 65 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i--------------------~~~~~~ 65 (185)
+++++++..|-.. ..++.||||.+++|++++|+|||||||||+||+|+.. .++.++
T Consensus 2 l~v~~l~K~y~~~----v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~I 77 (245)
T COG4555 2 LEVTDLTKSYGSK----VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77 (245)
T ss_pred eeeeehhhhccCH----HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhc
Confidence 4566666655331 2389999999999999999999999999999999543 234566
Q ss_pred CceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297 66 GCFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI 120 (185)
Q Consensus 66 g~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll 120 (185)
| .++.....+ + ..+++.+.+++.+.+++++..||-|||||+.||||+ ++|++++
T Consensus 78 G-Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~v 156 (245)
T COG4555 78 G-VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILV 156 (245)
T ss_pred c-eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEE
Confidence 6 555333221 1 355667888999999999999999999999999999 9999999
Q ss_pred EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||||++|+|......+.+. +.++++ .|.+||++||. .+++++||+++++++|++++.|+.+.
T Consensus 157 lDEP~sGLDi~~~r~~~df-i~q~k~-egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 157 LDEPTSGLDIRTRRKFHDF-IKQLKN-EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred EcCCCCCccHHHHHHHHHH-HHHhhc-CCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHH
Confidence 9999777766665555553 477776 69999999998 99999999999999999999998653
No 19
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-41 Score=262.93 Aligned_cols=179 Identities=16% Similarity=0.086 Sum_probs=141.6
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL------------- 62 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~------------- 62 (185)
+.++++|+...|-.... ..+++++|||++.+||+++|+|++|||||||.|+| |.|.+.
T Consensus 2 ~~l~v~nl~~~y~~~~~-~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF-AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred ceEEEeceEEEecCCcc-hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 35777777765533211 12599999999999999999999999999999999 555432
Q ss_pred -HhhCceecCCCC-Cc----c-------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 63 -AQIGCFVPCDSA-TI----S-------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 63 -~~~g~~v~~~~~-~~----~-------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
..+- +|||++. .+ + .+.++++.+|+. ..+++++.+|||||+||++||||+ .+
T Consensus 81 ~~~VQ-mVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~ 159 (252)
T COG1124 81 YRPVQ-MVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE 159 (252)
T ss_pred cccee-EEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence 2233 8999881 11 1 156778889986 457999999999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
|++||+|||+|.+|..-.+.+... +..++++++.|+|++||| .-+..+|||+++|++|++++.+..+++
T Consensus 160 PklLIlDEptSaLD~siQa~Ilnl-L~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l 229 (252)
T COG1124 160 PKLLILDEPTSALDVSVQAQILNL-LLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEEL 229 (252)
T ss_pred CCEEEecCchhhhcHHHHHHHHHH-HHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhh
Confidence 999999999666666554444443 477777789999999999 777889999999999999999887653
No 20
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-41 Score=266.74 Aligned_cols=174 Identities=14% Similarity=0.102 Sum_probs=142.4
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH--------------HHH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS--------------VFL 62 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i--------------~~~ 62 (185)
.+.++++++.| .++ ..+++|+||++++|+.++|+||||||||||++++ |.| .++
T Consensus 3 ~i~~~~l~~~y---~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~ 78 (235)
T COG1122 3 MIEAENLSFRY---PGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELR 78 (235)
T ss_pred eEEEEEEEEEc---CCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhh
Confidence 34555555443 233 6899999999999999999999999999999999 333 123
Q ss_pred HhhCceecCCCCCcc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 63 AQIGCFVPCDSATIS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 63 ~~~g~~v~~~~~~~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
.++| ||+|++...- ++.++++.+++.+..++++.+||||||||++||.++ .+|
T Consensus 79 ~~vG-~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P 157 (235)
T COG1122 79 QKVG-LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGP 157 (235)
T ss_pred cceE-EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCC
Confidence 4567 9999883211 366778889999999999999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++||||||+|+|+.....+.+. +..++++.|.|+|++||| +.+..+|||+++|++|+++.+|++.+
T Consensus 158 ~iliLDEPta~LD~~~~~~l~~~-l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~ 225 (235)
T COG1122 158 EILLLDEPTAGLDPKGRRELLEL-LKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAE 225 (235)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHH-HHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHH
Confidence 99999999777766665555554 477776457999999999 88899999999999999999998654
No 21
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=8.4e-41 Score=280.24 Aligned_cols=176 Identities=16% Similarity=0.148 Sum_probs=140.4
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------------
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------- 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------- 61 (185)
+++++++..|-. .++...+++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 2 I~~~~lsk~y~~-~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 2 IKLSNITKVFHQ-GTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred EEEEEEEEEECC-CCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 566677654421 11124799999999999999999999999999999999 43321
Q ss_pred HHhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 62 LAQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 62 ~~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
+..++ |+||+...++ .+.++++.+++.+..++++++||+|||||++|||++ .+|
T Consensus 81 r~~Ig-~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P 159 (343)
T TIGR02314 81 RRQIG-MIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 159 (343)
T ss_pred hcCEE-EEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 23456 9999863332 134567888999999999999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++|+||||+++|+.....+...+ +.++++.|.|||++||+ ..+.++||++++|++|++++.+++++
T Consensus 160 ~iLLlDEPts~LD~~t~~~i~~lL-~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~ 227 (343)
T TIGR02314 160 KVLLCDEATSALDPATTQSILELL-KEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSE 227 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999997777776666665544 67665458999999999 77789999999999999999887643
No 22
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.4e-41 Score=263.07 Aligned_cols=172 Identities=18% Similarity=0.241 Sum_probs=149.5
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------HHhhCc
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------LAQIGC 67 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------~~~~g~ 67 (185)
.+++.+++..| +.+.+++|+||++++|++.+++|||||||||.+|+| |.|.| .+.+|
T Consensus 2 ~L~ie~vtK~F-----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIG- 75 (300)
T COG4152 2 ALEIEGVTKSF-----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG- 75 (300)
T ss_pred ceEEecchhcc-----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcc-
Confidence 36677777666 447899999999999999999999999999999999 55544 34678
Q ss_pred eecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEe
Q psy5297 68 FVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIID 122 (185)
Q Consensus 68 ~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllD 122 (185)
|+|.++..++ .++.+++++++.+...+++.+||.|++|++.+..++ ++|+++|||
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILD 155 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILD 155 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEec
Confidence 9999885554 256788999999999999999999999999988888 999999999
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 123 ELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 123 EP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|||||+||...+.+...+ ..+++ .|+|||++||. ..++++||++.+|++|+.+.+|+.++
T Consensus 156 EPFSGLDPVN~elLk~~I-~~lk~-~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ 216 (300)
T COG4152 156 EPFSGLDPVNVELLKDAI-FELKE-EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVED 216 (300)
T ss_pred CCccCCChhhHHHHHHHH-HHHHh-cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHH
Confidence 999999999988777766 56666 69999999998 89999999999999999999987543
No 23
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-41 Score=281.56 Aligned_cols=174 Identities=17% Similarity=0.131 Sum_probs=141.0
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQI 65 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~ 65 (185)
.+++++++..|- +.+.+++|+||++++|++++|+||||||||||||+| |.|.+ ...+
T Consensus 3 ~l~i~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYD----GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDI 78 (356)
T ss_pred EEEEEeEEEEeC----CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 467777765441 235799999999999999999999999999999999 44332 2345
Q ss_pred CceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297 66 GCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI 120 (185)
Q Consensus 66 g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll 120 (185)
+ |+||++..++ .++++++.+++.+..++++.+||+|||||++|||++ .+|+++|
T Consensus 79 g-~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llL 157 (356)
T PRK11650 79 A-MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFL 157 (356)
T ss_pred E-EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6 9999873332 134567788999999999999999999999999999 9999999
Q ss_pred EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||||++++|......+...+ +.+.++.|.|+|++||+ .++..+||++++|++|+++..+++++
T Consensus 158 LDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~ 221 (356)
T PRK11650 158 FDEPLSNLDAKLRVQMRLEI-QRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVE 221 (356)
T ss_pred EeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHH
Confidence 99997776666555555544 56665468999999999 88999999999999999999887754
No 24
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-40 Score=280.14 Aligned_cols=174 Identities=17% Similarity=0.153 Sum_probs=141.5
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHh
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQ 64 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~ 64 (185)
+.++++++++.| +.+.+++|+||++++|++++|+||||||||||||+| |.|.+ ...
T Consensus 5 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ 79 (351)
T PRK11432 5 NFVVLKNITKRF-----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRD 79 (351)
T ss_pred cEEEEEeEEEEE-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 456777776655 236799999999999999999999999999999999 44432 234
Q ss_pred hCceecCCCCCcc---h---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEE
Q psy5297 65 IGCFVPCDSATIS---V---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLV 119 (185)
Q Consensus 65 ~g~~v~~~~~~~~---~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ll 119 (185)
++ |+||++..++ + ++++++.+++.+..++++.+||+|||||++|||++ .+|+++
T Consensus 80 ig-~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lL 158 (351)
T PRK11432 80 IC-MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVL 158 (351)
T ss_pred EE-EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 56 9999874332 1 33566778888889999999999999999999999 999999
Q ss_pred EEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 120 IIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 120 llDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|||||++++|......+...+ ..+.++.+.|+|++||| .++..+||++++|++|++...+++++
T Consensus 159 LLDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~ 223 (351)
T PRK11432 159 LFDEPLSNLDANLRRSMREKI-RELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQE 223 (351)
T ss_pred EEcCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999997776666655555544 56655468999999999 88889999999999999999888764
No 25
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-40 Score=265.63 Aligned_cols=159 Identities=18% Similarity=0.155 Sum_probs=128.1
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------HHHhhCceecCCCCCc--
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------FLAQIGCFVPCDSATI-- 76 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~~~~~g~~v~~~~~~~-- 76 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.|. +...++ |+||++..+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~-~v~q~~~~~~~ 91 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG-MLFQSGALFDS 91 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE-EEccCcccCCC
Confidence 5799999999999999999999999999999999 3321 122345 899876221
Q ss_pred -ch----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297 77 -SV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD 132 (185)
Q Consensus 77 -~~----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d 132 (185)
++ +.++++.+++.+..++++++||+|||||++||+++ .+|+++||||||+|+|+..
T Consensus 92 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 171 (235)
T cd03261 92 LTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA 171 (235)
T ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 21 23456777888778999999999999999999999 9999999999977776666
Q ss_pred hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
...+.+.+ +.++++.+.|||++||+ .++..+||++++|++|+++..++++
T Consensus 172 ~~~l~~~l-~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 222 (235)
T cd03261 172 SGVIDDLI-RSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPE 222 (235)
T ss_pred HHHHHHHH-HHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHH
Confidence 55555544 55554348999999999 7788899999999999999887654
No 26
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.2e-40 Score=280.43 Aligned_cols=173 Identities=18% Similarity=0.168 Sum_probs=141.5
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQI 65 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~ 65 (185)
.+++++++..| +.+.+++|+||++++|++++|+||||||||||||+| |.|.+ ...+
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRF-----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY 78 (353)
T ss_pred EEEEEEEEEEe-----CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 46777776655 235689999999999999999999999999999999 43332 2345
Q ss_pred CceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297 66 GCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI 120 (185)
Q Consensus 66 g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll 120 (185)
+ |+||++..++ .++++++.+++++..++++.+||+|||||++|||++ .+|+++|
T Consensus 79 g-~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llL 157 (353)
T TIGR03265 79 G-IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLL 157 (353)
T ss_pred E-EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5 9999874432 245567888999999999999999999999999999 9999999
Q ss_pred EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||||++++|......+...+ +.+.++.+.|+|++||+ .++..+||++++|++|+++..+++++
T Consensus 158 LDEP~s~LD~~~r~~l~~~L-~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~ 221 (353)
T TIGR03265 158 LDEPLSALDARVREHLRTEI-RQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQE 221 (353)
T ss_pred EcCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99997776666555555544 56655468999999999 88899999999999999999988754
No 27
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.9e-40 Score=274.29 Aligned_cols=173 Identities=21% Similarity=0.201 Sum_probs=138.4
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HH
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LA 63 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~ 63 (185)
..+++++++..| +.+.+++|+||++++|++++|+||||||||||+|+| |.|.+ ..
T Consensus 3 ~~i~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (303)
T TIGR01288 3 VAIDLVGVSKSY-----GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARV 77 (303)
T ss_pred cEEEEEeEEEEe-----CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhh
Confidence 457777776655 235799999999999999999999999999999999 43322 23
Q ss_pred hhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeE
Q psy5297 64 QIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSL 118 (185)
Q Consensus 64 ~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~l 118 (185)
+++ |+||++..+ ++ ++++++.+++.+..++++++||+|||||++||+++ .+|++
T Consensus 78 ~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 156 (303)
T TIGR01288 78 AIG-VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQL 156 (303)
T ss_pred cEE-EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 456 999886322 21 22456677888788999999999999999999999 99999
Q ss_pred EEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 119 VIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 119 lllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+||||||+|+|+.....+...+ ..+++ .|.|||++||+ .++.++||++++|++|+++..+++++
T Consensus 157 llLDEPt~gLD~~~~~~l~~~l-~~~~~-~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 221 (303)
T TIGR01288 157 LILDEPTTGLDPHARHLIWERL-RSLLA-RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHA 221 (303)
T ss_pred EEEeCCCcCCCHHHHHHHHHHH-HHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999997777766655555544 66665 58999999999 78889999999999999998887653
No 28
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-40 Score=262.69 Aligned_cols=160 Identities=19% Similarity=0.186 Sum_probs=129.7
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHhhCceecCCCCCc---c--
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQIGCFVPCDSATI---S-- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~~g~~v~~~~~~~---~-- 77 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.|.+ ...++ |+||++..+ +
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~ 91 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIG-IVFQDLSVDDELTGW 91 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEE-EecCCccccccCcHH
Confidence 5799999999999999999999999999999999 33221 22345 888886222 1
Q ss_pred -------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHH
Q psy5297 78 -------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMA 137 (185)
Q Consensus 78 -------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~ 137 (185)
.+.++++.+++.+..++++.+||+|||||++||+++ .+|+++||||||+|+|+.....+.
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~ 171 (220)
T cd03265 92 ENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW 171 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence 134556778888888999999999999999999999 999999999997777666655555
Q ss_pred HHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 138 CSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 138 ~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+.+ ..+.++.+.+||++||+ .++..+||++++|++|+++..+++++
T Consensus 172 ~~l-~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 172 EYI-EKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 544 55555348899999999 78889999999999999998877654
No 29
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=9e-40 Score=270.19 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=132.2
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhhCceecCCCCCc---c-
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQIGCFVPCDSATI---S- 77 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~g~~v~~~~~~~---~- 77 (185)
.+.+++|+||++++|++++|+||||||||||+|+| |.|. +..+++ |+||++..+ +
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv 83 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIG-IVPQYASVDEDLTG 83 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcE-EecCCCCCCCCCcH
Confidence 35799999999999999999999999999999999 4332 233466 999986322 2
Q ss_pred --------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHH
Q psy5297 78 --------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGM 136 (185)
Q Consensus 78 --------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~ 136 (185)
.++++++.+++.+..++++++||+|||||++||+++ .+|+++||||||+|+|+.....+
T Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 163 (302)
T TIGR01188 84 RENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163 (302)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 134567788888888999999999999999999999 99999999999777777665555
Q ss_pred HHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 137 ACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 137 ~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+. ++.+++ .|.|||++||+ .++.++||++++|++|+++..+++++
T Consensus 164 ~~~-l~~~~~-~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 210 (302)
T TIGR01188 164 WDY-IRALKE-EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEE 210 (302)
T ss_pred HHH-HHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 554 466665 58999999999 88889999999999999998887653
No 30
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-41 Score=263.49 Aligned_cols=176 Identities=19% Similarity=0.178 Sum_probs=143.1
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HH
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LA 63 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~ 63 (185)
+.++++++...| |+-.+++||||++++|++++|+||||||||||+++| |.|.+ .+
T Consensus 3 ~lL~v~~l~k~F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~ia 77 (250)
T COG0411 3 PLLEVRGLSKRF-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA 77 (250)
T ss_pred ceeeeccceeec-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHH
Confidence 445556655544 446799999999999999999999999999999999 33322 11
Q ss_pred hhC-ceecCCCC---Ccc---------------------------------hhhHHHhhcCcccccccCcCccHHHHHHH
Q psy5297 64 QIG-CFVPCDSA---TIS---------------------------------VVDQIFTRVGAADSQYRGISTFMMEMKET 106 (185)
Q Consensus 64 ~~g-~~v~~~~~---~~~---------------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~ 106 (185)
+.| ...||... .++ .+.++++.+|+.+.++++.++||+|+|++
T Consensus 78 r~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred hccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHH
Confidence 122 12333321 111 35567888999999999999999999999
Q ss_pred HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+.|||++ .+|++||||||.+|+++.+...+.+.+ ..++++.|.||+++.|| ..+..+|||+++|+.|+++++|+|++
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i-~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELI-RELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHH
Confidence 9999999 999999999999999999988888865 78876567999999999 77889999999999999999999976
Q ss_pred C
Q psy5297 185 V 185 (185)
Q Consensus 185 ~ 185 (185)
+
T Consensus 237 V 237 (250)
T COG0411 237 V 237 (250)
T ss_pred H
Confidence 4
No 31
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.6e-40 Score=279.32 Aligned_cols=174 Identities=16% Similarity=0.110 Sum_probs=140.1
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHh
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQ 64 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~ 64 (185)
+.++++++...| +.+.+++|+||++++|++++|+||||||||||||+| |.|.+ ...
T Consensus 13 ~~L~l~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ 87 (375)
T PRK09452 13 PLVELRGISKSF-----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRH 87 (375)
T ss_pred ceEEEEEEEEEE-----CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCC
Confidence 346666666544 235699999999999999999999999999999999 43322 233
Q ss_pred hCceecCCCCCcc---h---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEE
Q psy5297 65 IGCFVPCDSATIS---V---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLV 119 (185)
Q Consensus 65 ~g~~v~~~~~~~~---~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ll 119 (185)
++ |+||++..++ + ++++++.+++.+..++++.+||+|||||++|||++ .+|+++
T Consensus 88 ig-~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ll 166 (375)
T PRK09452 88 VN-TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVL 166 (375)
T ss_pred EE-EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 55 9999874332 1 34456778888889999999999999999999999 999999
Q ss_pred EEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 120 IIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 120 llDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|||||++++|......+...+ +.+.++.+.|+|++||| .++..+||++++|++|++...+++++
T Consensus 167 LLDEP~s~LD~~~r~~l~~~L-~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 231 (375)
T PRK09452 167 LLDESLSALDYKLRKQMQNEL-KALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231 (375)
T ss_pred EEeCCCCcCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999997776666655555544 66665468999999999 88899999999999999999887654
No 32
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-40 Score=259.48 Aligned_cols=156 Identities=21% Similarity=0.184 Sum_probs=125.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhCceecCCCCCc---c---
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIGCFVPCDSATI---S--- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g~~v~~~~~~~---~--- 77 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.|.+ ...++ |+||++..+ +
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~~ 91 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIG-MVFQDYALFPHLTVAE 91 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEE-EEcCchhhccCCcHHH
Confidence 5799999999999999999999999999999999 43322 12345 889875221 1
Q ss_pred ------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297 78 ------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMAC 138 (185)
Q Consensus 78 ------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~ 138 (185)
.+.++++.+++.+..++++.+||+|||||++||+++ .+|+++||||||+|+|+.....+.+
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~ 171 (213)
T cd03259 92 NIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELRE 171 (213)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 123566778888888999999999999999999999 9999999999977766655555555
Q ss_pred HHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEe
Q psy5297 139 SIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYL 180 (185)
Q Consensus 139 ~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~ 180 (185)
.+ ..++++.+.|||++||+ .++.++||++++|++|+++..|
T Consensus 172 ~l-~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 172 EL-KELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HH-HHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 44 55554358999999999 7788999999999999987643
No 33
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=9e-40 Score=275.20 Aligned_cols=172 Identities=18% Similarity=0.181 Sum_probs=139.4
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhC
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIG 66 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g 66 (185)
+++++++..| +.+.+++|+||++++|++++|+||||||||||||+| |.|.+ ...++
T Consensus 3 L~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~ 77 (353)
T PRK10851 3 IEIANIKKSF-----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77 (353)
T ss_pred EEEEEEEEEe-----CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEE
Confidence 6677776544 235699999999999999999999999999999999 44433 12355
Q ss_pred ceecCCCCCcc----------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297 67 CFVPCDSATIS----------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS 117 (185)
Q Consensus 67 ~~v~~~~~~~~----------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ 117 (185)
|+||++..++ .+.++++.+++.+..++++.+||+|||||++|||++ .+|+
T Consensus 78 -~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~ 156 (353)
T PRK10851 78 -FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ 156 (353)
T ss_pred -EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8998763221 123457778888889999999999999999999999 9999
Q ss_pred EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
++|||||++|+|......+.+.+ ..+.++.+.|+|++||| .++..+||++++|++|+++..+++++
T Consensus 157 llLLDEP~s~LD~~~r~~l~~~L-~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~ 223 (353)
T PRK10851 157 ILLLDEPFGALDAQVRKELRRWL-RQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQ 223 (353)
T ss_pred EEEEeCCCccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999997777776666555544 66665458999999999 88899999999999999999887654
No 34
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-39 Score=266.89 Aligned_cols=177 Identities=17% Similarity=0.142 Sum_probs=137.9
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH---------------HH
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV---------------FL 62 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~---------------~~ 62 (185)
++++++...|-......+.+++|+||++++|++++|+||||||||||+|+| |.|. +.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 667777665522111124699999999999999999999999999999999 4331 12
Q ss_pred HhhCceecCCCC--C--cc---------------------hhhHHHhhcCcc--cccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 63 AQIGCFVPCDSA--T--IS---------------------VVDQIFTRVGAA--DSQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 63 ~~~g~~v~~~~~--~--~~---------------------~~~~~l~~~~l~--~~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
.+++ |+||++. . .+ .+.++++.+++. +..++++.+||+|||||++||+++ .
T Consensus 83 ~~ig-~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 83 KKVG-LVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hceE-EEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 3456 9999751 1 12 134567778886 568999999999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+++|||||++|+|+.....+...+ ..++++.|.|||++||+ .++..+||++++|++|++++.+++++
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKI-KELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999997777776655555544 66665358999999999 77788999999999999999887653
No 35
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-40 Score=258.58 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=128.2
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--------HhhCceecCCCCCc---ch-----
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--------AQIGCFVPCDSATI---SV----- 78 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--------~~~g~~v~~~~~~~---~~----- 78 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.|.+. ..++ |+||.+..+ ++
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~-~v~q~~~~~~~~tv~e~l~ 95 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRG-YVFQQDALLPWLTVLDNVA 95 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEE-EEecccccccCCCHHHHHH
Confidence 5799999999999999999999999999999999 444331 2345 888875221 21
Q ss_pred ----------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHH
Q psy5297 79 ----------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIA 141 (185)
Q Consensus 79 ----------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il 141 (185)
+.++++.+++.+..++++++||+|||||++||+++ .+|+++||||||+|+|+.....+.+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l- 174 (220)
T cd03293 96 LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL- 174 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHH-
Confidence 23456777888778899999999999999999999 999999999997777776666555544
Q ss_pred HHHHhcCCCeEEEecCh-hHHHHhhcccccee--eeeEEEEeccC
Q psy5297 142 RELASNRQPFTLFATHF-HEIALLSRVIPTFR--NVHESKYLYHT 183 (185)
Q Consensus 142 ~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~--~g~i~~~~~~~ 183 (185)
..+.++.+.|||++||+ .++..+||++++|+ +|+++..++-+
T Consensus 175 ~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 175 LDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 55543358999999999 77889999999999 79998887643
No 36
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=5.8e-40 Score=276.79 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=135.0
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCc
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATI 76 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~ 76 (185)
.+.+++|+||++++||+++|+||||||||||+|+| |.|.+ +..++ |+||....+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~-~v~Q~~~l~ 83 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIG-MVFQQFALF 83 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEE-EEECCCcCC
Confidence 45699999999999999999999999999999999 33321 22456 999987433
Q ss_pred c------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcC
Q psy5297 77 S------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTF 131 (185)
Q Consensus 77 ~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~ 131 (185)
+ .+.++++.+++++..++++.+||+|||||++|||++ .+|+++||||||+++|+.
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 2 134567888998889999999999999999999999 999999999998888887
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 132 DGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 132 d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
....+.+.+ ..+.++.+.|||++||+ .++.++||++++|++|+++..+++++
T Consensus 164 ~r~~l~~~l-~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~e 216 (363)
T TIGR01186 164 IRDSMQDEL-KKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDE 216 (363)
T ss_pred HHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 777776655 56655458999999999 77899999999999999998887654
No 37
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-40 Score=277.15 Aligned_cols=173 Identities=20% Similarity=0.174 Sum_probs=138.8
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQI 65 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~ 65 (185)
.++++++...| +.+.+++|+||++++|++++|+||||||||||||+| |.|.+ ...+
T Consensus 3 ~l~i~~l~~~~-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAY-----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGV 77 (369)
T ss_pred EEEEEEEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCE
Confidence 46777776554 235799999999999999999999999999999999 44332 2235
Q ss_pred CceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297 66 GCFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI 120 (185)
Q Consensus 66 g~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll 120 (185)
+ |+||++..+ + .+.++++.+++.+..++++.+||+|||||++|||++ .+|+++|
T Consensus 78 ~-~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLL 156 (369)
T PRK11000 78 G-MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 156 (369)
T ss_pred E-EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5 999986332 2 134566778888888999999999999999999999 9999999
Q ss_pred EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||||++|+|+.....+...+ +.+.++.+.|+|++||+ .++..+||++++|++|++...+++++
T Consensus 157 LDEPts~LD~~~~~~l~~~L-~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~ 220 (369)
T PRK11000 157 LDEPLSNLDAALRVQMRIEI-SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220 (369)
T ss_pred EeCCcccCCHHHHHHHHHHH-HHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99997776665555555544 56655358999999999 78889999999999999998887654
No 38
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=8.6e-40 Score=275.98 Aligned_cols=173 Identities=14% Similarity=0.120 Sum_probs=140.6
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH----------HHH-----------HH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV----------SVF-----------LA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~----------i~~-----------~~ 63 (185)
.++++++.+.| +.+.+++|+||++++|++++|+||||||||||||+|+. |.+ ..
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r 79 (362)
T TIGR03258 5 GIRIDHLRVAY-----GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79 (362)
T ss_pred EEEEEEEEEEE-----CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHC
Confidence 46777777655 23579999999999999999999999999999999921 111 22
Q ss_pred hhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeE
Q psy5297 64 QIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSL 118 (185)
Q Consensus 64 ~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~l 118 (185)
.++ |+||++..++ .++++++.+++++..++++.+||+|||||++|||++ .+|++
T Consensus 80 ~ig-~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l 158 (362)
T TIGR03258 80 GLA-LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158 (362)
T ss_pred CEE-EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 355 9999874332 244567888999999999999999999999999999 99999
Q ss_pred EEEeCCCCCCCcCChhHHHHHHHHHHHhcC-CCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 119 VIIDELGRGTSTFDGFGMACSIARELASNR-QPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 119 lllDEP~~g~~~~d~~~~~~~il~~l~~~~-~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|||||++|+|......+...+ ..+.++. |.|+|++||| .++..+||++++|++|+++..+++++
T Consensus 159 lLLDEP~s~LD~~~r~~l~~~l-~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 159 LLLDEPLSALDANIRANMREEI-AALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred EEEcCccccCCHHHHHHHHHHH-HHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999997777666655555544 6666544 7999999999 88899999999999999999988754
No 39
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-39 Score=254.86 Aligned_cols=174 Identities=15% Similarity=0.157 Sum_probs=141.8
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQ 64 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~ 64 (185)
.++++++...| ++..++.+|||++++||+++|+||||+|||||||+| |.|.+ +.+
T Consensus 3 mL~v~~l~~~Y-----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r 77 (237)
T COG0410 3 MLEVENLSAGY-----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77 (237)
T ss_pred ceeEEeEeecc-----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHh
Confidence 45666665444 446799999999999999999999999999999999 44433 122
Q ss_pred hC-ceecCCCCCc---ch--------------------hhHHHhhcC-cccccccCcCccHHHHHHHHHHHHhC-CCCeE
Q psy5297 65 IG-CFVPCDSATI---SV--------------------VDQIFTRVG-AADSQYRGISTFMMEMKETATVIKKC-TENSL 118 (185)
Q Consensus 65 ~g-~~v~~~~~~~---~~--------------------~~~~l~~~~-l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~l 118 (185)
.| +||||....| ++ .+.+++.|. +.+..+++.++|||||||+++||||| .+|++
T Consensus 78 ~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl 157 (237)
T COG0410 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL 157 (237)
T ss_pred CCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE
Confidence 22 3999987433 33 334455554 45667889999999999999999999 99999
Q ss_pred EEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 119 VIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 119 lllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
++||||+.|++|.-...+.+.+ +.++++.+.||+++.++ ..+.+++||.++|.+|+++.+|+.++
T Consensus 158 LLLDEPs~GLaP~iv~~I~~~i-~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~e 223 (237)
T COG0410 158 LLLDEPSEGLAPKIVEEIFEAI-KELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAE 223 (237)
T ss_pred EEecCCccCcCHHHHHHHHHHH-HHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHH
Confidence 9999999999998878777765 88886568899999999 88889999999999999999998765
No 40
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-39 Score=275.92 Aligned_cols=173 Identities=14% Similarity=0.089 Sum_probs=139.1
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQI 65 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~ 65 (185)
.++++++...+ ++..+++|+||++++|++++|+||||||||||||+| |.|.+ ...+
T Consensus 19 ~l~l~~v~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 19 LLEIRNLTKSF-----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred eEEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 45666665544 235799999999999999999999999999999999 43322 2345
Q ss_pred CceecCCCCCcc---h---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297 66 GCFVPCDSATIS---V---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI 120 (185)
Q Consensus 66 g~~v~~~~~~~~---~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll 120 (185)
| |+||++..++ + +.++++.+++.+..++++.+||+|||||++|||++ .+|+++|
T Consensus 94 g-~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 94 N-MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred E-EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6 9999874333 1 34566778888889999999999999999999999 9999999
Q ss_pred EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||||++++|......+...+ ..+.++.+.|+|++||+ .++..+||++++|++|+++..+++++
T Consensus 173 LDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEV-VDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred EeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHH
Confidence 99997776666655555544 44444468999999999 78899999999999999999988654
No 41
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-39 Score=260.87 Aligned_cols=173 Identities=18% Similarity=0.149 Sum_probs=136.1
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------HHhhC
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------LAQIG 66 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------~~~~g 66 (185)
.+.++++++...| +++.+++|+||++++|++++|+||||||||||+|+| |.|.+ ...++
T Consensus 10 ~~~l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~ 84 (257)
T PRK11247 10 GTPLLLNAVSKRY-----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTR 84 (257)
T ss_pred CCcEEEEEEEEEE-----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceE
Confidence 3456666665544 235799999999999999999999999999999999 43322 22345
Q ss_pred ceecCCCCCc---c---------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCC
Q psy5297 67 CFVPCDSATI---S---------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRG 127 (185)
Q Consensus 67 ~~v~~~~~~~---~---------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g 127 (185)
|+||++..+ + .+.++++.+++.+..++++++||+|||||++||+++ .+|+++||||||+|
T Consensus 85 -~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~ 163 (257)
T PRK11247 85 -LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGA 163 (257)
T ss_pred -EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 888876322 2 134567778888888999999999999999999999 99999999999777
Q ss_pred CCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEecc
Q psy5297 128 TSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYH 182 (185)
Q Consensus 128 ~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~ 182 (185)
+|+.....+.+.+ ..+.++.+.|||++||+ .++..+||++++|++|+++..++.
T Consensus 164 LD~~~~~~l~~~L-~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 164 LDALTRIEMQDLI-ESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred CCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccc
Confidence 6666655555544 55544358999999999 777889999999999999887754
No 42
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-39 Score=260.78 Aligned_cols=173 Identities=17% Similarity=0.162 Sum_probs=135.0
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-----------Hhh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL-----------AQI 65 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~-----------~~~ 65 (185)
.++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |.|.+. ..+
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRF-----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNV 76 (239)
T ss_pred EEEEEeEEEEE-----CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccce
Confidence 36667766544 235799999999999999999999999999999999 433321 234
Q ss_pred CceecCCCCCc---ch-------------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 66 GCFVPCDSATI---SV-------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 66 g~~v~~~~~~~---~~-------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
+ |+||++..+ ++ +.++++.+++.+..++++.+||+||+||++||+++ .+|
T Consensus 77 ~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 155 (239)
T cd03296 77 G-FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEP 155 (239)
T ss_pred E-EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 4 888875221 11 23446677887778899999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++||||||+|+|+.....+.+.+ ..++++.+.|||++||+ .++..+||++++|++|+++..+++++
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l-~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (239)
T cd03296 156 KVLLLDEPFGALDAKVRKELRRWL-RRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDE 223 (239)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 999999997777666655555544 56654348999999999 77889999999999999998877653
No 43
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.6e-39 Score=268.63 Aligned_cols=170 Identities=16% Similarity=0.237 Sum_probs=137.1
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQI 65 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~ 65 (185)
+++++++..| +.+.+++|+||++++|++++|+||||||||||+|+| |.|. +...+
T Consensus 3 l~~~~l~~~~-----~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~i 77 (301)
T TIGR03522 3 IRVSSLTKLY-----GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNI 77 (301)
T ss_pred EEEEEEEEEE-----CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhce
Confidence 5666666544 236799999999999999999999999999999999 4332 23345
Q ss_pred CceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297 66 GCFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI 120 (185)
Q Consensus 66 g~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll 120 (185)
+ |+||.+..+ + .++++++.+++.+..+++++.||+|||||+++|+++ .+|+++|
T Consensus 78 g-~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lli 156 (301)
T TIGR03522 78 G-YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLI 156 (301)
T ss_pred E-EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6 999986322 2 134556778888888999999999999999999999 9999999
Q ss_pred EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||||++|+|+.....+...+ +.+++ +.|||++||+ .++.++||++++|++|++.+.++.++
T Consensus 157 LDEPt~gLD~~~~~~l~~~l-~~~~~--~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (301)
T TIGR03522 157 LDEPTTGLDPNQLVEIRNVI-KNIGK--DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDE 218 (301)
T ss_pred EcCCcccCCHHHHHHHHHHH-HHhcC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99997777766655555543 56643 6899999999 78999999999999999998887654
No 44
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-39 Score=258.10 Aligned_cols=176 Identities=15% Similarity=0.148 Sum_probs=135.0
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------------
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------- 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------- 61 (185)
++++++...|-.. .+...+++++||++++|++++|+||||||||||+|+| |.|.+
T Consensus 2 i~~~~l~~~~~~~-~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 2 IELKNVSKVFGDT-GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred eEEecceEEccCC-CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 4556665443110 0012799999999999999999999999999999999 43311
Q ss_pred HHhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 62 LAQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 62 ~~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
...++ |+||++..+ ++ +.++++.+++.+..++++.+||+||+||++||+++ .+|
T Consensus 81 ~~~i~-~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (233)
T cd03258 81 RRRIG-MIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP 159 (233)
T ss_pred HhheE-EEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 23455 999886322 21 23456777888888899999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++|||||++|+|+.....+.+.+ ..++++.+.|||++||+ .++.++||++++|++|+++..+++++
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l-~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (233)
T cd03258 160 KVLLCDEATSALDPETTQSILALL-RDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227 (233)
T ss_pred CEEEecCCCCcCCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 999999997777666655555544 55554348999999999 77788999999999999998887543
No 45
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2e-39 Score=276.68 Aligned_cols=172 Identities=16% Similarity=0.182 Sum_probs=139.2
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~ 63 (185)
.++++++...| +++.+++|+||++++|++++|+||||||||||||+| |.|.+ ..
T Consensus 3 ~L~~~nls~~y-----~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~ 77 (402)
T PRK09536 3 MIDVSDLSVEF-----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77 (402)
T ss_pred eEEEeeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhc
Confidence 56777776544 236799999999999999999999999999999999 33322 23
Q ss_pred hhCceecCCCCC---cc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 64 QIGCFVPCDSAT---IS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 64 ~~g~~v~~~~~~---~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
+++ |+||++.. ++ .++++++.+++.+..++++.+||+|||||+.|||++ +
T Consensus 78 ~ig-~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~ 156 (402)
T PRK09536 78 RVA-SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQ 156 (402)
T ss_pred ceE-EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 355 88887521 11 234567788888888999999999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+++||||||+|+|+.....+.+. ++.+++ .+.|||++||+ .++.++|||+++|++|+++..+++++
T Consensus 157 ~P~iLLLDEPtsgLD~~~~~~l~~l-L~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~e 225 (402)
T PRK09536 157 ATPVLLLDEPTASLDINHQVRTLEL-VRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPAD 225 (402)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHH-HHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999777666665555554 467765 58999999999 88889999999999999999988764
No 46
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-39 Score=257.15 Aligned_cols=177 Identities=17% Similarity=0.136 Sum_probs=136.0
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------- 61 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------- 61 (185)
|+++.++++++...|-.. .....+++++||++++|++++|+||||||||||+|+| |.|.+
T Consensus 1 ~~~~~l~~~~l~~~~~~~-~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~ 79 (233)
T PRK11629 1 MNKILLQCDNLCKRYQEG-SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSA 79 (233)
T ss_pred CCCceEEEEeEEEEcCCC-CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHH
Confidence 788888888887544210 0114699999999999999999999999999999999 32211
Q ss_pred -----H-HhhCceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHH
Q psy5297 62 -----L-AQIGCFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIK 111 (185)
Q Consensus 62 -----~-~~~g~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~ 111 (185)
. ..++ |+||++..+ + .+.++++.+++.+..++.+.+||+|||||++||+
T Consensus 80 ~~~~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~ 158 (233)
T PRK11629 80 AKAELRNQKLG-FIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIAR 158 (233)
T ss_pred HHHHHHhccEE-EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 1 2355 999986222 2 1335567788888888999999999999999999
Q ss_pred hC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297 112 KC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY 181 (185)
Q Consensus 112 ~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~ 181 (185)
++ .+|+++||||||+|+|+.....+.+.+ +.++++.|.|||++||+ .++.. ++++++|++|+++..+.
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 159 ALVNNPRLVLADEPTGNLDARNADSIFQLL-GELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEec
Confidence 99 999999999997777666655555544 56654358999999999 55555 57999999999988765
No 47
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.9e-39 Score=255.30 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=125.3
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-----------HhhCceecCCCCCc---c---
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL-----------AQIGCFVPCDSATI---S--- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~-----------~~~g~~v~~~~~~~---~--- 77 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.+.+. ..++ |+||++..+ +
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~~ 91 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIA-MVFQNYALYPHMTVYD 91 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEE-EEecChhhccCCCHHH
Confidence 5799999999999999999999999999999999 433321 1244 888876221 2
Q ss_pred ------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297 78 ------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMAC 138 (185)
Q Consensus 78 ------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~ 138 (185)
.+.++++.+++.+..++++.+||+|||||+++|+++ .+|+++|||||++|+|+.....+.+
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~ 171 (213)
T cd03301 92 NIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA 171 (213)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 123456778888888999999999999999999999 9999999999977766655554544
Q ss_pred HHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEe
Q psy5297 139 SIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYL 180 (185)
Q Consensus 139 ~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~ 180 (185)
.+ +.++++.+.|||++||+ .++..+||++++|++|++++.|
T Consensus 172 ~l-~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 172 EL-KRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HH-HHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 43 55554358999999999 7788999999999999998754
No 48
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.4e-38 Score=257.35 Aligned_cols=176 Identities=14% Similarity=0.101 Sum_probs=139.6
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------ 60 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------ 60 (185)
|+++.++++++...| +++.+++|+||++++|++++|+||||||||||+++| |.+.
T Consensus 1 ~~~~~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 1 MSENKLNVIDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDK 75 (257)
T ss_pred CCCccEEEeeeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccc
Confidence 677889999987655 236799999999999999999999999999999999 3221
Q ss_pred --------------HHHhhCceecCCCCCc---ch----------------------hhHHHhhcCccccc-ccCcCccH
Q psy5297 61 --------------FLAQIGCFVPCDSATI---SV----------------------VDQIFTRVGAADSQ-YRGISTFM 100 (185)
Q Consensus 61 --------------~~~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~~~~-~~~~~~lS 100 (185)
+...++ |+||++..+ ++ +.++++.+++.+.. ++++.+||
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~-~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 154 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLT-MVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLS 154 (257)
T ss_pred ccccccccchHHHHHhhceE-EEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence 122345 999886322 21 23456677777654 78899999
Q ss_pred HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297 101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK 178 (185)
Q Consensus 101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~ 178 (185)
+||+||++||+++ .+|+++||||||+|+|+.....+.+.+ ..+++ .|.|+|++||+ .++..+||++++|++|+++.
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~l~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 232 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIM-QQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 232 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999 999999999997777666655555543 66665 58999999999 77788999999999999998
Q ss_pred EeccCC
Q psy5297 179 YLYHTN 184 (185)
Q Consensus 179 ~~~~~~ 184 (185)
.+++++
T Consensus 233 ~~~~~~ 238 (257)
T PRK10619 233 EGAPEQ 238 (257)
T ss_pred eCCHHH
Confidence 876543
No 49
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.3e-39 Score=257.93 Aligned_cols=159 Identities=15% Similarity=0.154 Sum_probs=128.8
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCCCCCc---c
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCDSATI---S 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~~~~~---~ 77 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.+.+ ...++ |+||++..+ +
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t 91 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG-YLPQEASIFRKLT 91 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE-EecCCccccccCc
Confidence 5799999999999999999999999999999999 43321 11244 888876222 2
Q ss_pred ---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhH
Q psy5297 78 ---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFG 135 (185)
Q Consensus 78 ---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~ 135 (185)
.++++++.+++.+..++.+.+||+|||||++||+++ .+|+++||||||+|+|+.....
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 171 (232)
T cd03218 92 VEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171 (232)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 123556777888888999999999999999999999 9999999999977776666555
Q ss_pred HHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 136 MACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 136 ~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+.+.+ +.+.+ .+.|+|++||+ .++.++||++++|++|++...++.++
T Consensus 172 ~~~~l-~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 219 (232)
T cd03218 172 IQKII-KILKD-RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEE 219 (232)
T ss_pred HHHHH-HHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHH
Confidence 55544 66665 58999999999 78999999999999999998876543
No 50
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=3.8e-39 Score=245.03 Aligned_cols=168 Identities=19% Similarity=0.188 Sum_probs=137.4
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH----------------HH
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS----------------VF 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i----------------~~ 61 (185)
+++++++..|.. + +.+|+|+||++++||++-|+||+|||||||||+| |.| .+
T Consensus 2 I~f~~V~k~Y~~---g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~L 77 (223)
T COG2884 2 IRFENVSKAYPG---G-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77 (223)
T ss_pred eeehhhhhhcCC---C-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchh
Confidence 455566555533 3 6799999999999999999999999999999999 443 23
Q ss_pred HHhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 62 LAQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 62 ~~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
+.++| +|||+...++ .+.++++.+|+.+..+..|.+||||||||++||||+ .+|
T Consensus 78 RR~IG-vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P 156 (223)
T COG2884 78 RRQIG-VVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQP 156 (223)
T ss_pred hheee-eEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCC
Confidence 56788 9999874332 356678999999999999999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEecc
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYH 182 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~ 182 (185)
++||.||| |..+|+....+.+ ++.+++ .|.||+++||| ..+..+-.|++.+++|+++.....
T Consensus 157 ~vLlADEP---TGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 157 AVLLADEP---TGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred CeEeecCC---CCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999 5556655444332 577777 79999999999 667778899999999999876543
No 51
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-39 Score=268.19 Aligned_cols=176 Identities=16% Similarity=0.151 Sum_probs=137.2
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------------
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------- 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------- 61 (185)
++++++...|-. .++.+.+++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 2 i~i~~l~~~y~~-~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 2 IELKNISKVFPQ-GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred EEEEeEEEEeCC-CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 456666554421 01135799999999999999999999999999999999 33221
Q ss_pred HHhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 62 LAQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 62 ~~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
+.+++ |+||++..+ ++ +.++++.+++.+..++++++||+|||||++||+++ .+|
T Consensus 81 ~~~ig-~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 159 (343)
T PRK11153 81 RRQIG-MIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP 159 (343)
T ss_pred hcCEE-EEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 23456 999986322 21 23456778888888999999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++||||||+|+|+.....+.+.+ ..++++.|.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus 160 ~iLlLDEPts~LD~~~~~~l~~~L-~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~ 227 (343)
T PRK11153 160 KVLLCDEATSALDPATTRSILELL-KDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999997777666655555544 66655358999999999 77888999999999999998876543
No 52
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.6e-38 Score=250.67 Aligned_cols=165 Identities=18% Similarity=0.189 Sum_probs=128.5
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------H
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------F 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~ 61 (185)
++++++...| .++.+.+++|+||++++|++++|+||||||||||+|+| |.|. +
T Consensus 2 l~~~~l~~~~---~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (216)
T TIGR00960 2 IRFEQVSKAY---PGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFL 78 (216)
T ss_pred eEEEEEEEEe---cCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHH
Confidence 4556665433 22224699999999999999999999999999999999 3221 1
Q ss_pred HHhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 62 LAQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 62 ~~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
..+++ |+||++..+ ++ +.++++.+++.+..++++.+||+|||||++||+++ .+|
T Consensus 79 ~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (216)
T TIGR00960 79 RRHIG-MVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKP 157 (216)
T ss_pred HHhce-EEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 23455 999986322 21 23456778888888999999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE 176 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i 176 (185)
+++||||||+|+|+.....+.+.+ ..+++ .+.|||++||+ .++..+||++++|++|++
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLF-EEFNR-RGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999997777666655555544 56655 58999999999 777889999999999874
No 53
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-39 Score=267.71 Aligned_cols=177 Identities=13% Similarity=0.083 Sum_probs=138.1
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------- 61 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------- 61 (185)
.+++++++..|-........+++|+||++++|++++|+||||||||||+|+| |.+.+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 4677777765522111123599999999999999999999999999999999 43221
Q ss_pred ----------------------HHhhCceecCCCC--Cc--c---------------------hhhHHHhhcCcc-cccc
Q psy5297 62 ----------------------LAQIGCFVPCDSA--TI--S---------------------VVDQIFTRVGAA-DSQY 93 (185)
Q Consensus 62 ----------------------~~~~g~~v~~~~~--~~--~---------------------~~~~~l~~~~l~-~~~~ 93 (185)
...+| |+||++. .+ + .+.++++.+++. +..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig-~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVG-VVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceE-EEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 22345 9999741 11 1 245567788886 6789
Q ss_pred cCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccce
Q psy5297 94 RGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTF 171 (185)
Q Consensus 94 ~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l 171 (185)
+++.+||+|||||++||+++ .+|+++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++.++|||+++|
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l-~~l~~-~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIF-DNLNK-QGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHH-CCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 99999999999999999999 999999999997777666555554543 66665 59999999999 7788999999999
Q ss_pred eeeeEEEEeccCC
Q psy5297 172 RNVHESKYLYHTN 184 (185)
Q Consensus 172 ~~g~i~~~~~~~~ 184 (185)
++|++++.+++++
T Consensus 239 ~~G~i~~~g~~~~ 251 (305)
T PRK13651 239 KDGKIIKDGDTYD 251 (305)
T ss_pred ECCEEEEECCHHH
Confidence 9999999887654
No 54
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-39 Score=263.73 Aligned_cols=178 Identities=15% Similarity=0.076 Sum_probs=137.4
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------- 61 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------- 61 (185)
.++++++...|-...+..+.+|+|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3677777665521111124699999999999999999999999999999999 43311
Q ss_pred --HHhhCceecCCCC--C--cc---------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC
Q psy5297 62 --LAQIGCFVPCDSA--T--IS---------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC 113 (185)
Q Consensus 62 --~~~~g~~v~~~~~--~--~~---------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l 113 (185)
...++ |+||++. . .+ .++++++.+++. +..++++.+||+|||||++||+++
T Consensus 82 ~~~~~ig-~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 82 PLRKKVG-IVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHhhEE-EEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 22355 9999751 1 11 234566778886 567899999999999999999999
Q ss_pred -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|+++|||||++|+|+.....+... +..++++.|.|||++||+ .++.++|||+++|++|++++.+++++
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~-L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEM-FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999777766665555454 466655358999999999 77889999999999999998887543
No 55
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-38 Score=254.67 Aligned_cols=176 Identities=14% Similarity=0.126 Sum_probs=136.9
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------ 60 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------ 60 (185)
|+.+.+++++++..| +.+.+++++||++++|++++|+||||||||||+|+| |.+.
T Consensus 1 ~~~~~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 1 MEKVMLSFDKVSAHY-----GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTA 75 (237)
T ss_pred CCccEEEEEeEEEee-----CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHH
Confidence 666778888887654 235799999999999999999999999999999999 3321
Q ss_pred --HHHhhCceecCCCCCc---chh-------------------hHHHhhc-CcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 61 --FLAQIGCFVPCDSATI---SVV-------------------DQIFTRV-GAADSQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 61 --~~~~~g~~v~~~~~~~---~~~-------------------~~~l~~~-~l~~~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
....++ |+||++..+ ++. ..+++.+ ++.+..++++.+||+||+||++||+++ .
T Consensus 76 ~~~~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (237)
T PRK11614 76 KIMREAVA-IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMS 154 (237)
T ss_pred HHHHhCEE-EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence 122345 888876322 221 2233444 355566788999999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+++||||||+|+|+.....+.+.+ ..+++ .+.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus 155 ~p~illlDEPt~~LD~~~~~~l~~~l-~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (237)
T PRK11614 155 QPRLLLLDEPSLGLAPIIIQQIFDTI-EQLRE-QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDA 223 (237)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHH
Confidence 99999999997777665555554544 56665 58999999999 77899999999999999998887654
No 56
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=5.3e-39 Score=252.03 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=125.7
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhCceecCCCCCc---c---
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIGCFVPCDSATI---S--- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g~~v~~~~~~~---~--- 77 (185)
+++++|+||++++|++++|+||||||||||+|+| |.|.+ ...++ |+||++..+ +
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~e 91 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG-ALIEAPGFYPNLTARE 91 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEE-EecCCCccCccCcHHH
Confidence 5799999999999999999999999999999999 32211 23455 899876322 2
Q ss_pred --------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHH
Q psy5297 78 --------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAR 142 (185)
Q Consensus 78 --------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~ 142 (185)
.+.++++.+++.+..++++.+||+|||||+++|+++ .+|+++||||||+|+|+.....+...+ .
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l-~ 170 (208)
T cd03268 92 NLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELI-L 170 (208)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHH-H
Confidence 134456778888888999999999999999999999 999999999997777766655555543 5
Q ss_pred HHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297 143 ELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 143 ~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~ 179 (185)
.+++ .+.|+|++||+ .++..+||++++|++|+++..
T Consensus 171 ~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~ 207 (208)
T cd03268 171 SLRD-QGITVLISSHLLSEIQKVADRIGIINKGKLIEE 207 (208)
T ss_pred HHHH-CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 6655 58999999999 777889999999999998764
No 57
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=9.7e-39 Score=257.01 Aligned_cols=172 Identities=13% Similarity=0.108 Sum_probs=134.6
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV---------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~---------------- 60 (185)
.+++++++..| +++.+++|+||++++|++++|+||||||||||+|+| |.|.
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (250)
T PRK11264 3 AIEVKNLVKKF-----HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77 (250)
T ss_pred cEEEeceEEEE-----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchh
Confidence 46677776544 235799999999999999999999999999999999 3321
Q ss_pred -----HHHhhCceecCCCCCc---ch----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHH
Q psy5297 61 -----FLAQIGCFVPCDSATI---SV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVI 110 (185)
Q Consensus 61 -----~~~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia 110 (185)
+...++ |+||++..+ ++ +.++++.+++.+..++++++||+||+||++||
T Consensus 78 ~~~~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la 156 (250)
T PRK11264 78 GLIRQLRQHVG-FVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIA 156 (250)
T ss_pred hHHHHhhhhEE-EEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHH
Confidence 122345 899876222 21 23345667887778899999999999999999
Q ss_pred HhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 111 KKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 111 ~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++ .+|+++||||||+|+|+.....+.+. ++.+.+ .+.++|++||+ .++.++||++++|++|+++..+++++
T Consensus 157 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 230 (250)
T PRK11264 157 RALAMRPEVILFDEPTSALDPELVGEVLNT-IRQLAQ-EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKA 230 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999 99999999999777766655555554 366665 58999999999 77888999999999999998876543
No 58
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.1e-38 Score=258.02 Aligned_cols=174 Identities=17% Similarity=0.121 Sum_probs=135.4
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------- 61 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------- 61 (185)
+.++++++...| +++.+++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 6 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (269)
T PRK11831 6 NLVDMRGVSFTR-----GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80 (269)
T ss_pred ceEEEeCeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHH
Confidence 346666665433 236799999999999999999999999999999999 43321
Q ss_pred --HHhhCceecCCCCCc---ch----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297 62 --LAQIGCFVPCDSATI---SV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 62 --~~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
...++ |+||+...+ ++ +.++++.+++.+..++++++||+|||||++||+++
T Consensus 81 ~~~~~i~-~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~ 159 (269)
T PRK11831 81 TVRKRMS-MLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA 159 (269)
T ss_pred HHhhcEE-EEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 12345 888876222 21 12345677888778999999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|+++||||||+|+|+.....+.+.+ ..++++.|.|||++||+ .++.++||++++|++|+++..+++++
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDPITMGVLVKLI-SELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQA 230 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHH-HHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHH
Confidence 999999999997777666555555544 56654348999999999 88889999999999999998876543
No 59
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-39 Score=251.77 Aligned_cols=154 Identities=22% Similarity=0.300 Sum_probs=124.6
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------HHhhCceecCCCCCc---ch----
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------LAQIGCFVPCDSATI---SV---- 78 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------~~~~g~~v~~~~~~~---~~---- 78 (185)
+.+++|+||++++|++++|+||||||||||+++| |.|.+ ...++ |+||++..+ ++
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~-~~~q~~~~~~~~tv~e~l 91 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIG-YLPEERGLYPKMKVIDQL 91 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEE-EeccCCcCCcCCcHHHHH
Confidence 5799999999999999999999999999999999 33322 23455 888876222 21
Q ss_pred -----------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH
Q psy5297 79 -----------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI 140 (185)
Q Consensus 79 -----------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i 140 (185)
+.++++.+++.+..++++.+||+|||||+++|+++ .+|+++|||||++|+|+.....+.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l 171 (210)
T cd03269 92 VYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVI 171 (210)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 23456677887778899999999999999999999 999999999997777666655555543
Q ss_pred HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297 141 ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 141 l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~ 179 (185)
+.+++ .+.|||++||+ .++.++||++++|++|++...
T Consensus 172 -~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 172 -RELAR-AGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred -HHHHH-CCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 56655 48899999999 777889999999999998764
No 60
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-38 Score=255.66 Aligned_cols=177 Identities=16% Similarity=0.150 Sum_probs=138.1
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------- 61 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------- 61 (185)
|++..++++++...+ +.+.+++++||++++|++++|+||||||||||+|+| |.|.+
T Consensus 1 ~~~~~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 75 (255)
T PRK11300 1 MSQPLLSVSGLMMRF-----GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGH 75 (255)
T ss_pred CCCceEEEeeEEEEE-----CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHH
Confidence 666678888887644 236799999999999999999999999999999999 43321
Q ss_pred --HH-hhCceecCCCCCc---ch------------------------------------hhHHHhhcCcccccccCcCcc
Q psy5297 62 --LA-QIGCFVPCDSATI---SV------------------------------------VDQIFTRVGAADSQYRGISTF 99 (185)
Q Consensus 62 --~~-~~g~~v~~~~~~~---~~------------------------------------~~~~l~~~~l~~~~~~~~~~l 99 (185)
.. .++ |+||++..+ ++ +.++++.+++.+..++++.+|
T Consensus 76 ~~~~~~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 154 (255)
T PRK11300 76 QIARMGVV-RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNL 154 (255)
T ss_pred HHHhcCeE-EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhC
Confidence 11 133 778875211 11 223355678877889999999
Q ss_pred HHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEE
Q psy5297 100 MMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHES 177 (185)
Q Consensus 100 S~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~ 177 (185)
|+||+||++||+++ .+|+++|||||++|+|+.....+.+.+ ..++++.+.|||++||+ .++.++||++++|++|+++
T Consensus 155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L-~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 233 (255)
T PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELI-AELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL 233 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHH-HHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 99999999999999 999999999997776666655555544 56655348999999999 7788999999999999999
Q ss_pred EEeccCC
Q psy5297 178 KYLYHTN 184 (185)
Q Consensus 178 ~~~~~~~ 184 (185)
..+++++
T Consensus 234 ~~~~~~~ 240 (255)
T PRK11300 234 ANGTPEE 240 (255)
T ss_pred ecCCHHH
Confidence 8877543
No 61
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-38 Score=259.79 Aligned_cols=178 Identities=15% Similarity=0.141 Sum_probs=142.1
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------ 60 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------ 60 (185)
|.+..++++++...|- +++.+++|+||++++||+++|+||||||||||+|+| |.+.
T Consensus 1 ~~~~~l~~~~l~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~ 76 (283)
T PRK13636 1 MEDYILKVEELNYNYS----DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKG 76 (283)
T ss_pred CCCceEEEEeEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcch
Confidence 6777888888876552 135699999999999999999999999999999999 3221
Q ss_pred ---HHHhhCceecCCCC----Ccc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297 61 ---FLAQIGCFVPCDSA----TIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK 112 (185)
Q Consensus 61 ---~~~~~g~~v~~~~~----~~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~ 112 (185)
+...++ |+||++. ..+ .++++++.+++.+..++++.+||+||+||++||++
T Consensus 77 ~~~~~~~ig-~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 77 LMKLRESVG-MVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred HHHHHhhEE-EEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 223456 9999751 111 13455677888888899999999999999999999
Q ss_pred C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+ .+|+++|||||++|+|+.....+.+.+ ..+.++.|.|||++||+ .++..+||++++|++|++++.+++++
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 228 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLL-VEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 228 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9 999999999997776666555555544 56655348999999999 77778999999999999999887654
No 62
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-39 Score=262.16 Aligned_cols=177 Identities=12% Similarity=0.131 Sum_probs=137.7
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-----------------
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------- 60 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------- 60 (185)
+++++++..|-......+.+++|+||++++|++++|+||||||||||+|+| |.|.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 667777655521111124699999999999999999999999999999999 4321
Q ss_pred HHHhhCceecCCCC--Cc--c---------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-
Q psy5297 61 FLAQIGCFVPCDSA--TI--S---------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 61 ~~~~~g~~v~~~~~--~~--~---------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
++..++ |+||++. .+ + .+.++++.+|+. +..++++.+||+||+||++||+++
T Consensus 83 ~~~~ig-~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 83 VRKRIG-MVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHhheE-EEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 233456 9999751 11 1 134566778886 677899999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|+++|||||++|+|+.....+...+ ..++++.|.|||++||+ .++.++||++++|++|+++..+++++
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~~l-~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMRLL-KSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999997777776655555544 66654358999999999 77788999999999999998887643
No 63
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=8e-39 Score=256.37 Aligned_cols=173 Identities=15% Similarity=0.152 Sum_probs=133.6
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------H
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------F 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~ 61 (185)
++++++...|- +++.+++|+||++++|++++|+||||||||||+|+| |.|. +
T Consensus 2 l~~~~l~~~~~----~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR02315 2 LEVENLSKVYP----NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77 (243)
T ss_pred eEEEeeeeecC----CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHH
Confidence 45566654441 135699999999999999999999999999999999 3221 1
Q ss_pred HHhhCceecCCCCCc---ch-----------------------------hhHHHhhcCcccccccCcCccHHHHHHHHHH
Q psy5297 62 LAQIGCFVPCDSATI---SV-----------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATV 109 (185)
Q Consensus 62 ~~~~g~~v~~~~~~~---~~-----------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~i 109 (185)
..+++ |+||++..+ ++ +.++++.+++.+..++++.+||+||+||++|
T Consensus 78 ~~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 156 (243)
T TIGR02315 78 RRRIG-MIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAI 156 (243)
T ss_pred HhheE-EEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHH
Confidence 23455 888875211 11 2334566778777889999999999999999
Q ss_pred HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++ .+|+++||||||+|+|+.....+.+.+ +.+.++.+.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus 157 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (243)
T TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYL-KRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSE 232 (243)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHH
Confidence 9999 999999999997777766655555544 55554358999999999 77788999999999999998877653
No 64
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-38 Score=253.84 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=127.6
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------HHHhhCceecCCCCC---
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------FLAQIGCFVPCDSAT--- 75 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~~~~~g~~v~~~~~~--- 75 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.|. +...++ |+||+...
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~ 92 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIG-MIFQQFNLIER 92 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccE-EEcccCccccc
Confidence 5799999999999999999999999999999999 3321 122345 88887521
Q ss_pred cch-----------------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297 76 ISV-----------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG 125 (185)
Q Consensus 76 ~~~-----------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~ 125 (185)
.++ +.++++.+++.+..++++.+||+|||||++||+++ .+|+++||||||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 172 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV 172 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 121 22345667777778899999999999999999999 999999999997
Q ss_pred CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+|+.....+.+.+ ..++++.|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus 173 ~~LD~~~~~~l~~~l-~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (241)
T cd03256 173 ASLDPASSRQVMDLL-KRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE 231 (241)
T ss_pred ccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHH
Confidence 777766655555544 56654358999999999 77788999999999999998876643
No 65
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.5e-38 Score=250.45 Aligned_cols=159 Identities=14% Similarity=0.151 Sum_probs=126.5
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH-----HH----------------------HHhhCceecCCCC
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS-----VF----------------------LAQIGCFVPCDSA 74 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i-----~~----------------------~~~~g~~v~~~~~ 74 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.. .. ..+++ |+||++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~ 91 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVG-MVFQKPN 91 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEE-EEecCch
Confidence 5799999999999999999999999999999999 443 11 12344 8888752
Q ss_pred Cc--ch----------------------hhHHHhhcCcccccccC--cCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCC
Q psy5297 75 TI--SV----------------------VDQIFTRVGAADSQYRG--ISTFMMEMKETATVIKKC-TENSLVIIDELGRG 127 (185)
Q Consensus 75 ~~--~~----------------------~~~~l~~~~l~~~~~~~--~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g 127 (185)
.+ ++ +.++++.+++.+..+++ +.+||+|||||++||+++ .+|+++||||||+|
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 171 (227)
T cd03260 92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171 (227)
T ss_pred hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 21 11 23455667777666666 599999999999999999 99999999999777
Q ss_pred CCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 128 TSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 128 ~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
+|+.....+.+.+ ..+++ . .|||++||+ .++.++||++++|++|+++..++++++
T Consensus 172 LD~~~~~~l~~~l-~~~~~-~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 172 LDPISTAKIEELI-AELKK-E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred CCHHHHHHHHHHH-HHHhh-C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 6666555555443 56655 3 899999999 778889999999999999999988765
No 66
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=6.4e-39 Score=268.01 Aligned_cols=180 Identities=17% Similarity=0.103 Sum_probs=139.2
Q ss_pred CceEEEcccCCceeeecC--------CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----
Q psy5297 3 TGTLVLNQCRHPIVELQG--------GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----- 61 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~--------~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----- 61 (185)
++.++++|++..|-...+ +...+++|+||++++||+++|+|+||||||||+|+| |.|.+
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 467888888776632111 125699999999999999999999999999999999 43321
Q ss_pred -----------HHhhCceecCCCC--C---cch-----------------------hhHHHhhcCcc-cccccCcCccHH
Q psy5297 62 -----------LAQIGCFVPCDSA--T---ISV-----------------------VDQIFTRVGAA-DSQYRGISTFMM 101 (185)
Q Consensus 62 -----------~~~~g~~v~~~~~--~---~~~-----------------------~~~~l~~~~l~-~~~~~~~~~lS~ 101 (185)
..+++ |+||++. . +++ +.++++.+++. +..++++.+|||
T Consensus 86 ~~~~~~~~~~~r~~i~-~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQ-MIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CcCCHHHHHHHhCceE-EEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 23455 9999861 1 121 23446667774 467899999999
Q ss_pred HHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297 102 EMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 102 g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~ 179 (185)
||+||++||+++ .+|+++|+||||+|+|......+.+.+ ..++++.+.|+|++||| ..+.++||++++|++|++++.
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL-~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~ 243 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLL-QQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL 243 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999 999999999996666665555555544 66665458999999999 777789999999999999998
Q ss_pred eccCC
Q psy5297 180 LYHTN 184 (185)
Q Consensus 180 ~~~~~ 184 (185)
+++++
T Consensus 244 g~~~~ 248 (331)
T PRK15079 244 GTYDE 248 (331)
T ss_pred cCHHH
Confidence 87643
No 67
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=6e-39 Score=253.26 Aligned_cols=151 Identities=19% Similarity=0.212 Sum_probs=120.9
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCc-
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATI- 76 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~- 76 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.|.+ ..+++ |+||++..+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~ 95 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIG-FVFQSFNLLP 95 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEE-EEeeccccCC
Confidence 5799999999999999999999999999999999 33211 12355 888875221
Q ss_pred --c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297 77 --S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD 132 (185)
Q Consensus 77 --~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d 132 (185)
+ .+.++++.+++.+..++++.+||+|||||++||+++ .+|+++||||||+|+|+..
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 175 (218)
T cd03255 96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175 (218)
T ss_pred CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence 1 134566778888888999999999999999999999 9999999999977777666
Q ss_pred hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297 133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE 176 (185)
Q Consensus 133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i 176 (185)
...+.+.+ ..++++.+.|||++||+ .++. +||++++|++|++
T Consensus 176 ~~~l~~~l-~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 176 GKEVMELL-RELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHH-HHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 55555544 55554348999999999 5655 9999999999974
No 68
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.4e-38 Score=250.13 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=127.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhhCceecCCCCCc---c--
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQIGCFVPCDSATI---S-- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~g~~v~~~~~~~---~-- 77 (185)
+++++|+||++++|++++|+||||||||||+|+| |.|. +..+++ |+||++..+ +
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~ 93 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLG-YCPQFDALFDELTVR 93 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEE-EecCcCCccccCCHH
Confidence 5799999999999999999999999999999999 4332 123455 888876322 1
Q ss_pred -------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHH
Q psy5297 78 -------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMA 137 (185)
Q Consensus 78 -------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~ 137 (185)
.+.++++.+++.+..++++.+||+||+||++||+++ .+|+++|||||++|+|+.....+.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~ 173 (220)
T cd03263 94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHH
Confidence 133556778888888899999999999999999999 999999999996666665544444
Q ss_pred HHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 138 CSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 138 ~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+. ++.+++ +.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus 174 ~~-l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 174 DL-ILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred HH-HHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 43 355554 5899999999 77778999999999999998887765
No 69
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.4e-39 Score=255.92 Aligned_cols=159 Identities=21% Similarity=0.210 Sum_probs=127.5
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCCCCCc---c
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCDSATI---S 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~~~~~---~ 77 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.|.+ ...++ |+||++..+ +
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~l~~~~t 91 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG-RTFQIPRLFPELT 91 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE-EEecccccccCCC
Confidence 5699999999999999999999999999999999 43321 11244 888875211 1
Q ss_pred -------------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297 78 -------------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG 125 (185)
Q Consensus 78 -------------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~ 125 (185)
.+.++++.+++.+..++++++||+||+||+++|+++ .+|+++||||||
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 171 (236)
T cd03219 92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPA 171 (236)
T ss_pred HHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 123456677888788999999999999999999999 999999999997
Q ss_pred CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+|+.....+.+. +..+++ .+.|+|++||+ .++..+||++++|++|++...+++++
T Consensus 172 ~~LD~~~~~~l~~~-l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (236)
T cd03219 172 AGLNPEETEELAEL-IRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229 (236)
T ss_pred ccCCHHHHHHHHHH-HHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHH
Confidence 77666555555453 366665 58999999999 77889999999999999998877653
No 70
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.2e-37 Score=247.28 Aligned_cols=174 Identities=59% Similarity=0.975 Sum_probs=155.9
Q ss_pred EcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcC
Q psy5297 8 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVG 87 (185)
Q Consensus 8 ~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~ 87 (185)
+++++||+++.....+++++|++++..++++++|+||||+|||||+|+||.+.++++.|+|+|+....++.+++++++++
T Consensus 2 ~~~~~hpll~~~~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~ 81 (222)
T cd03285 2 LKEARHPCVEAQDDVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVG 81 (222)
T ss_pred ccccCCCEEeccCCCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeec
Confidence 67899999997555678999999999999999999999999999999999999999999999999988899999999999
Q ss_pred cccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcc
Q psy5297 88 AADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRV 167 (185)
Q Consensus 88 l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~ 167 (185)
+.+...+..++++.+++++..+++++.+|+++|||||++||+++|+..+.+.+++.+.++.+.++|++||+.++.++||+
T Consensus 82 l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~ 161 (222)
T cd03285 82 ASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADE 161 (222)
T ss_pred cccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhc
Confidence 98887777777777777777777777899999999999999999999998877788775458999999999889999999
Q ss_pred ccceeeeeEEEEec
Q psy5297 168 IPTFRNVHESKYLY 181 (185)
Q Consensus 168 ~~~l~~g~i~~~~~ 181 (185)
+..+++|++....+
T Consensus 162 ~~~i~~g~~~~~~~ 175 (222)
T cd03285 162 VPNVKNLHVTALTD 175 (222)
T ss_pred CCCeEEEEEEEEEe
Confidence 99999999987664
No 71
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-39 Score=273.96 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=131.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCc-
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATI- 76 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~- 76 (185)
..+++|+||++++|++++|+||||||||||+|+| |.|.+ ..+++ |+||+...+
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ig-yv~Q~~~l~~ 119 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIA-MVFQSFALMP 119 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEE-EEECCCcCCC
Confidence 4589999999999999999999999999999999 43322 12355 999986332
Q ss_pred --c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297 77 --S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD 132 (185)
Q Consensus 77 --~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d 132 (185)
+ .+.++++.+++.+..++++++||+|||||++|||++ .+|+++||||||+|+|+..
T Consensus 120 ~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~ 199 (400)
T PRK10070 120 HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI 199 (400)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 2 133467778898889999999999999999999999 9999999999988877777
Q ss_pred hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
...+.+.+ ..+.++.+.|||++||+ .++.++||++++|++|+++..+++++
T Consensus 200 r~~l~~~L-~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~ 251 (400)
T PRK10070 200 RTEMQDEL-VKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDE 251 (400)
T ss_pred HHHHHHHH-HHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHH
Confidence 66666654 55554358999999999 78889999999999999998876543
No 72
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-38 Score=257.48 Aligned_cols=172 Identities=14% Similarity=0.081 Sum_probs=137.2
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~ 63 (185)
.++++++...|- +...+++|+||++++|++++|+||||||||||+++| |.|.+ ..
T Consensus 4 ~l~~~~l~~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 79 (274)
T PRK13647 4 IIEVEDLHFRYK----DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRS 79 (274)
T ss_pred eEEEEEEEEEeC----CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHh
Confidence 577777765441 124699999999999999999999999999999999 43321 23
Q ss_pred hhCceecCCCC--C--cc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297 64 QIGCFVPCDSA--T--IS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS 117 (185)
Q Consensus 64 ~~g~~v~~~~~--~--~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ 117 (185)
.++ |+||++. . .+ .+.++++.+++.+..++++.+||+||+||++||+++ .+|+
T Consensus 80 ~i~-~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 158 (274)
T PRK13647 80 KVG-LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD 158 (274)
T ss_pred hEE-EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 456 9999751 1 11 134556778888888999999999999999999999 9999
Q ss_pred EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
++|||||++|+|+.....+.+.+ ..+++ .|.|||++||+ .++.++||++++|++|++++.++++
T Consensus 159 llllDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 223 (274)
T PRK13647 159 VIVLDEPMAYLDPRGQETLMEIL-DRLHN-QGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS 223 (274)
T ss_pred EEEEECCCcCCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999997777776656555544 66665 48999999999 6777899999999999999888754
No 73
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-39 Score=261.30 Aligned_cols=161 Identities=19% Similarity=0.177 Sum_probs=129.5
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCC
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSAT 75 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~ 75 (185)
+.+.+++|+||++++|++++|+||||||||||+|+| |.|.+ ..+++ |+||++..
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~-~v~q~~~~ 113 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS-MVFQSFAL 113 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE-EEecCccc
Confidence 345699999999999999999999999999999999 33321 12345 89987632
Q ss_pred c---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCc
Q psy5297 76 I---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTST 130 (185)
Q Consensus 76 ~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~ 130 (185)
+ ++ +.++++.+++.+..++.+.+||+|||||++||+++ .+|+++||||||+|+|+
T Consensus 114 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~ 193 (269)
T cd03294 114 LPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDP 193 (269)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 2 21 23456778888888999999999999999999999 99999999999777776
Q ss_pred CChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 131 FDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 131 ~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
.....+.+.+ ..+.++.|.|+|++||+ .++.++||++++|++|++...++++
T Consensus 194 ~~~~~l~~~l-~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 246 (269)
T cd03294 194 LIRREMQDEL-LRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPE 246 (269)
T ss_pred HHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 6655555544 55554358999999999 7788999999999999999887654
No 74
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.2e-38 Score=248.16 Aligned_cols=152 Identities=20% Similarity=0.174 Sum_probs=124.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------HHhhCceecCCCC----Ccc---
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------LAQIGCFVPCDSA----TIS--- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------~~~~g~~v~~~~~----~~~--- 77 (185)
+.+++|+||++++|++++|+||||||||||||+| |.|.+ ...++ |+||++. ..+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~-~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG-YVMQDVDYQLFTDSVRE 91 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceE-EEecChhhhhhhccHHH
Confidence 5799999999999999999999999999999999 43322 22455 9998851 112
Q ss_pred --------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHH
Q psy5297 78 --------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAR 142 (185)
Q Consensus 78 --------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~ 142 (185)
.+.++++.+++.+..++++.+||+|||||+++||++ .+|+++|||||++|+|+.....+.+.+ .
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~ 170 (205)
T cd03226 92 ELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI-R 170 (205)
T ss_pred HHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH-H
Confidence 234567888888888999999999999999999999 999999999997777766655555543 6
Q ss_pred HHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEE
Q psy5297 143 ELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHES 177 (185)
Q Consensus 143 ~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~ 177 (185)
.+++ .+.|+|++||+ .++..+||++++|++|+++
T Consensus 171 ~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 171 ELAA-QGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 6655 58999999999 7788899999999999874
No 75
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-39 Score=256.28 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=127.1
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhCceecCCCCCc---ch
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIGCFVPCDSATI---SV 78 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g~~v~~~~~~~---~~ 78 (185)
+.+++++||++++|++++|+||||||||||+|+| |.|.+ ...++ |+||++..+ ++
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv 92 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG-YVIQQIGLFPHMTV 92 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE-EEccCccccCCCcH
Confidence 5699999999999999999999999999999999 43322 22345 899876222 21
Q ss_pred ---------------------hhHHHhhcCccc--ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChh
Q psy5297 79 ---------------------VDQIFTRVGAAD--SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGF 134 (185)
Q Consensus 79 ---------------------~~~~l~~~~l~~--~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~ 134 (185)
+.++++.+++.+ ..++++.+||+||+||++||+++ .+|+++||||||+|+|+....
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 172 (242)
T cd03295 93 EENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172 (242)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 234567778875 67899999999999999999999 999999999997776665555
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 135 GMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 135 ~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
.+.+.+ ..++++.|.+||++||+ .++.++||++++|++|+++..++++
T Consensus 173 ~l~~~L-~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 173 QLQEEF-KRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPD 221 (242)
T ss_pred HHHHHH-HHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 444433 55554348999999999 7788999999999999998877654
No 76
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-38 Score=261.13 Aligned_cols=177 Identities=20% Similarity=0.177 Sum_probs=140.0
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------- 61 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------- 61 (185)
|.++.++++++...|- +..+++++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 1 ~~~~~l~~~~l~~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~ 77 (279)
T PRK13635 1 MKEEIIRVEHISFRYP---DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVW 77 (279)
T ss_pred CCCceEEEEEEEEEeC---CCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHH
Confidence 5566788888876551 1235699999999999999999999999999999999 43321
Q ss_pred --HHhhCceecCCCC--C--cch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297 62 --LAQIGCFVPCDSA--T--ISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 62 --~~~~g~~v~~~~~--~--~~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
...++ |+||++. . .++ +.++++.+++.+..++++.+||+||+||++||+++
T Consensus 78 ~~~~~i~-~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 78 DVRRQVG-MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred HHhhheE-EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 23455 9998751 1 121 34566778888889999999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
.+|+++|||||++|+|+.....+.+.+ ..++++.+.|||++||+ .++. .||++++|++|++++.++++
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l-~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 225 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETV-RQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPE 225 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHH
Confidence 999999999997777776666555544 66665358999999999 5554 69999999999999888754
No 77
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=9.2e-39 Score=252.72 Aligned_cols=159 Identities=18% Similarity=0.163 Sum_probs=126.2
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCCCCCc---c
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCDSATI---S 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~~~~~---~ 77 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.+.+ ...++ |+||++..+ +
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t 91 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG-YVPEGRRIFPELT 91 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE-EeccccccCCCCc
Confidence 5799999999999999999999999999999999 43321 12345 899886322 2
Q ss_pred h-------------------hhHHHhhc-CcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHH
Q psy5297 78 V-------------------VDQIFTRV-GAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGM 136 (185)
Q Consensus 78 ~-------------------~~~~l~~~-~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~ 136 (185)
+ +..+++.+ ++.+..++++.+||+||+||++||+++ .+|+++|||||++|+|+.....+
T Consensus 92 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 171 (222)
T cd03224 92 VEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 171 (222)
T ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH
Confidence 1 12344555 456667889999999999999999999 99999999999777776665555
Q ss_pred HHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 137 ACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 137 ~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+.+ ..+++ .+.|+|++||+ .++..+||++++|++|++...++.++
T Consensus 172 ~~~l-~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (222)
T cd03224 172 FEAI-RELRD-EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAE 218 (222)
T ss_pred HHHH-HHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHH
Confidence 5544 56655 58999999999 77889999999999999988876543
No 78
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=4.1e-38 Score=248.51 Aligned_cols=153 Identities=20% Similarity=0.314 Sum_probs=125.5
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHhhCceecCCCCCc---c---
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQIGCFVPCDSATI---S--- 77 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~~g~~v~~~~~~~---~--- 77 (185)
.+++|+||++++|++++|+||||||||||+|+| |.|.+ ..+++ |+||++..+ +
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~e 97 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG-FVSDSTGLYDRLTARE 97 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE-EecCCcccCcCCCHHH
Confidence 799999999999999999999999999999999 33321 23455 889876222 2
Q ss_pred ------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297 78 ------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMAC 138 (185)
Q Consensus 78 ------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~ 138 (185)
.+.++++.+++.+..++++.+||+|||||++||+++ .+|+++|||||++|+|+.....+.+
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 177 (218)
T cd03266 98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177 (218)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 134467778888888999999999999999999999 9999999999977776666555555
Q ss_pred HHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297 139 SIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 139 ~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~ 179 (185)
.+ ..+++ .+.|+|++||+ .++..+||++++|++|++...
T Consensus 178 ~l-~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 178 FI-RQLRA-LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217 (218)
T ss_pred HH-HHHHH-CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeec
Confidence 44 56655 58999999999 778899999999999998754
No 79
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.1e-38 Score=254.86 Aligned_cols=170 Identities=21% Similarity=0.271 Sum_probs=132.0
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHhh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQI 65 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~~ 65 (185)
++++++...+ +++.+++|+||++++|++++|+||||||||||+|+| |.|.+ ...+
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i 76 (236)
T TIGR03864 2 LEVAGLSFAY-----GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARL 76 (236)
T ss_pred EEEEeeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhE
Confidence 4555555433 235799999999999999999999999999999999 33321 1234
Q ss_pred CceecCCCCC---cch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297 66 GCFVPCDSAT---ISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI 120 (185)
Q Consensus 66 g~~v~~~~~~---~~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll 120 (185)
+ |+||++.. .++ +.++++.+++.+..++++.+||+||+||++||+++ .+|+++|
T Consensus 77 ~-~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 155 (236)
T TIGR03864 77 G-VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLL 155 (236)
T ss_pred E-EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5 88887622 121 23456777888778999999999999999999999 9999999
Q ss_pred EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
||||++|+|+.....+.+.+ ..++++.+.|+|++||+ .++. .||++++|++|+++..++++
T Consensus 156 lDEP~~~LD~~~~~~l~~~l-~~~~~~~~~tiii~sH~~~~~~-~~d~i~~l~~G~i~~~~~~~ 217 (236)
T TIGR03864 156 LDEPTVGLDPASRAAIVAHV-RALCRDQGLSVLWATHLVDEIE-ADDRLVVLHRGRVLADGAAA 217 (236)
T ss_pred EcCCccCCCHHHHHHHHHHH-HHHHHhCCCEEEEEecChhhHh-hCCEEEEEeCCeEEEeCCHH
Confidence 99997777776666555544 55654358999999999 5665 59999999999998887654
No 80
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.4e-38 Score=251.36 Aligned_cols=170 Identities=14% Similarity=0.138 Sum_probs=133.2
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------H
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------L 62 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------~ 62 (185)
++++++...+ +.+.+++|+||++++|++++|+||||||||||+|+| |.|.+ .
T Consensus 2 l~~~~l~~~~-----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (240)
T PRK09493 2 IEFKNVSKHF-----GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIR 76 (240)
T ss_pred EEEEeEEEEE-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHh
Confidence 4455554433 235799999999999999999999999999999999 32211 2
Q ss_pred HhhCceecCCCCCc---ch----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 63 AQIGCFVPCDSATI---SV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 63 ~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
..++ |+||++..+ ++ +.++++.+++++..++++++||+||+||++||+++ .+|
T Consensus 77 ~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 155 (240)
T PRK09493 77 QEAG-MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKP 155 (240)
T ss_pred hceE-EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCC
Confidence 2345 888875221 11 23456777888778999999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+++||||||+|+|+.....+.+. +..+++ .+.|+|++||+ .++..+||++++|++|+++..++++
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~-l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 221 (240)
T PRK09493 156 KLMLFDEPTSALDPELRHEVLKV-MQDLAE-EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQ 221 (240)
T ss_pred CEEEEcCCcccCCHHHHHHHHHH-HHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHH
Confidence 99999999777776665555554 356665 58999999999 7788899999999999999887654
No 81
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=254.77 Aligned_cols=172 Identities=15% Similarity=0.148 Sum_probs=134.3
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~ 63 (185)
.++++++...+ +.+.+++|+||++++|++++|+||||||||||+|+| |.|.+ ..
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 77 (241)
T PRK14250 3 EIEFKEVSYSS-----FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRR 77 (241)
T ss_pred eEEEEeEEEEe-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhh
Confidence 36677766443 235799999999999999999999999999999999 43321 22
Q ss_pred hhCceecCCCCCcc-------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEe
Q psy5297 64 QIGCFVPCDSATIS-------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIID 122 (185)
Q Consensus 64 ~~g~~v~~~~~~~~-------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllD 122 (185)
.++ |+||++..++ .+.++++.+++. +..++++.+||+||+||++||+++ .+|+++|||
T Consensus 78 ~i~-~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 156 (241)
T PRK14250 78 KIG-MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLD 156 (241)
T ss_pred cEE-EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 345 8898862221 234567778886 567899999999999999999999 999999999
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 123 ELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 123 EP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
||++|+|+.....+...+ ..++++.|.|||++||+ .++.++||++++|++|+++..++++
T Consensus 157 EPt~~LD~~~~~~l~~~l-~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (241)
T PRK14250 157 EPTSALDPTSTEIIEELI-VKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTY 217 (241)
T ss_pred CCcccCCHHHHHHHHHHH-HHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 997776665544444433 55554348999999999 7788899999999999998877654
No 82
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=7.9e-39 Score=271.22 Aligned_cols=162 Identities=15% Similarity=0.150 Sum_probs=134.7
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH---------------------HhhCceecC
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL---------------------AQIGCFVPC 71 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~---------------------~~~g~~v~~ 71 (185)
+...+++|+||++++|++++|+||||||||||+|+| |.|.+. .+++ |+||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~-~vfQ 113 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVS-MVFQ 113 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEE-EEEC
Confidence 445699999999999999999999999999999999 432221 1345 9999
Q ss_pred CCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCC
Q psy5297 72 DSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGR 126 (185)
Q Consensus 72 ~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~ 126 (185)
+...++ .+.++++.+++.+..++++.+||+|||||++|||++ .+|+++||||||+
T Consensus 114 ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts 193 (382)
T TIGR03415 114 KFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFS 193 (382)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 874332 134567788888889999999999999999999999 9999999999988
Q ss_pred CCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 127 GTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 127 g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
++|+.....+...+ ..+.++.+.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus 194 ~LD~~~r~~l~~~L-~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~e 251 (382)
T TIGR03415 194 ALDPLIRTQLQDEL-LELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEE 251 (382)
T ss_pred cCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 88887777776655 55555458999999999 77889999999999999999887654
No 83
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-38 Score=255.09 Aligned_cols=175 Identities=13% Similarity=0.137 Sum_probs=135.3
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------- 61 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------- 61 (185)
++.++++++...+ +++.+++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 9 ~~~l~i~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 83 (265)
T PRK10575 9 DTTFALRNVSFRV-----PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83 (265)
T ss_pred CceEEEeeEEEEE-----CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH
Confidence 3456777766544 235799999999999999999999999999999999 33221
Q ss_pred HHhhCceecCCCCC---cc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC
Q psy5297 62 LAQIGCFVPCDSAT---IS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC 113 (185)
Q Consensus 62 ~~~~g~~v~~~~~~---~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l 113 (185)
...++ |+||+... ++ .+.++++.+++.+..++++.+||+||+||++||+++
T Consensus 84 ~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 162 (265)
T PRK10575 84 ARKVA-YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLV 162 (265)
T ss_pred hhheE-EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 22345 88886411 11 123456677887778899999999999999999999
Q ss_pred -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|+++||||||+|+|+.....+.+.+ ..++++.+.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l-~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALV-HRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 999999999997776665555555544 56654348999999999 77889999999999999988876543
No 84
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-38 Score=262.48 Aligned_cols=179 Identities=13% Similarity=0.074 Sum_probs=138.1
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------- 60 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------- 60 (185)
++.+++++++..|-........+++|+||++++|++++|+||||||||||+|+| |.|.
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 455777777655421111124699999999999999999999999999999999 3221
Q ss_pred ---------------HHHhhCceecCCCC--Cc--c---------------------hhhHHHhhcCcc-cccccCcCcc
Q psy5297 61 ---------------FLAQIGCFVPCDSA--TI--S---------------------VVDQIFTRVGAA-DSQYRGISTF 99 (185)
Q Consensus 61 ---------------~~~~~g~~v~~~~~--~~--~---------------------~~~~~l~~~~l~-~~~~~~~~~l 99 (185)
++..++ |+||++. .+ + .+.++++.+++. +..++.+.+|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig-~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 177 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVS-MVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGL 177 (320)
T ss_pred ccccccccccchHHHHHhcEE-EEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence 123355 9999751 11 1 134456778886 5788999999
Q ss_pred HHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEE
Q psy5297 100 MMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHES 177 (185)
Q Consensus 100 S~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~ 177 (185)
|+|||||++|||++ .+|+++||||||+|+|+.....+.+.+ ..+++ .+.|||++||+ .++.++||++++|++|+++
T Consensus 178 SgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L-~~l~~-~g~TiiivtHd~~~~~~~adri~vl~~G~i~ 255 (320)
T PRK13631 178 SGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLI-LDAKA-NNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255 (320)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHH-HHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999 999999999997777666655555544 56655 58999999999 6678999999999999999
Q ss_pred EEeccCC
Q psy5297 178 KYLYHTN 184 (185)
Q Consensus 178 ~~~~~~~ 184 (185)
..+++++
T Consensus 256 ~~g~~~~ 262 (320)
T PRK13631 256 KTGTPYE 262 (320)
T ss_pred EeCCHHH
Confidence 9987653
No 85
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.6e-38 Score=248.95 Aligned_cols=163 Identities=17% Similarity=0.180 Sum_probs=127.8
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------H
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------F 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~ 61 (185)
++++++...+- +++.+++|+||++++|++++|+||||||||||+|+| |.|. +
T Consensus 2 l~~~~l~~~~~----~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (214)
T TIGR02673 2 IEFHNVSKAYP----GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77 (214)
T ss_pred EEEEeeeEEeC----CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 45666654431 125799999999999999999999999999999999 4331 1
Q ss_pred HHhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 62 LAQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 62 ~~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
...++ |+||++..+ ++ +.++++.+++.+..++.+.+||+||+||++||+++ .+|
T Consensus 78 ~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (214)
T TIGR02673 78 RRRIG-VVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSP 156 (214)
T ss_pred HhheE-EEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 23455 899876322 21 23456777888778899999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH 175 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~ 175 (185)
+++||||||+|+|+.....+.+.+ +.+++ .+.|+|++||+ .++..+||++++|++|+
T Consensus 157 ~lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 157 PLLLADEPTGNLDPDLSERILDLL-KRLNK-RGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHH-HHHHH-cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999997777766655555544 55655 58999999999 78888999999999885
No 86
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-38 Score=253.75 Aligned_cols=171 Identities=16% Similarity=0.115 Sum_probs=133.6
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------------
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------- 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------- 61 (185)
++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 3 l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (242)
T PRK11124 3 IQLNGINCFY-----GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred EEEEeeEEEE-----CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhH
Confidence 5667765544 235799999999999999999999999999999999 43221
Q ss_pred ---HHhhCceecCCCCCc---ch----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC
Q psy5297 62 ---LAQIGCFVPCDSATI---SV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC 113 (185)
Q Consensus 62 ---~~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l 113 (185)
..+++ |+||.+..+ ++ +.++++.+++.+..++.+.+||+||+||++||+++
T Consensus 78 ~~~~~~i~-~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 156 (242)
T PRK11124 78 RELRRNVG-MVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARAL 156 (242)
T ss_pred HHHHhheE-EEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 22455 899876222 21 23345667887778999999999999999999999
Q ss_pred -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|+++|||||++|+|+.....+.+. ++.+++ .+.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~-l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSI-IRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHH-HHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999766666554444443 366655 58999999999 77788999999999999998876543
No 87
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-38 Score=258.47 Aligned_cols=176 Identities=13% Similarity=0.107 Sum_probs=135.5
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-----------------
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------- 60 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------- 60 (185)
++++++...|-......+.+++|+||++++|++++|+||||||||||+|+| |.|.
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 566676655521111113599999999999999999999999999999999 3221
Q ss_pred HHHhhCceecCCC--CCc--c---------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-
Q psy5297 61 FLAQIGCFVPCDS--ATI--S---------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 61 ~~~~~g~~v~~~~--~~~--~---------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
+...++ |+||++ ..+ + .+.++++.+++. +..++++.+||+|||||++||+++
T Consensus 82 ~~~~ig-~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~ 160 (288)
T PRK13643 82 VRKKVG-VVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA 160 (288)
T ss_pred HHhhEE-EEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence 123456 999975 111 1 134456777885 567899999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|+++|||||++|+|+.....+.+. ++.+++ .|.|||++||+ .++.++||++++|++|+++..+++++
T Consensus 161 ~~p~illLDEPt~gLD~~~~~~l~~~-l~~l~~-~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQL-FESIHQ-SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred hCCCEEEEECCccCCCHHHHHHHHHH-HHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999777766555555443 466665 58999999999 77788999999999999999887654
No 88
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-38 Score=257.72 Aligned_cols=170 Identities=16% Similarity=0.150 Sum_probs=133.2
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------H
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------L 62 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------~ 62 (185)
+++++++..| +++.+++|+||++++|++++|+||||||||||+|+| |.|.+ .
T Consensus 2 l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 76 (271)
T PRK13638 2 LATSDLWFRY-----QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALR 76 (271)
T ss_pred eEEEEEEEEc-----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHH
Confidence 4566665444 235699999999999999999999999999999999 43311 2
Q ss_pred HhhCceecCCCC--Cc--ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 63 AQIGCFVPCDSA--TI--SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 63 ~~~g~~v~~~~~--~~--~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
..++ |+||++. .+ ++ +.++++.+++.+..++++.+||+|||||++||+++ .+|
T Consensus 77 ~~i~-~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p 155 (271)
T PRK13638 77 QQVA-TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQA 155 (271)
T ss_pred hheE-EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCC
Confidence 3455 9998752 11 11 22456667887778899999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+++||||||+|+|+.....+.+.+ ..+++ .+.|||++||+ .++..+||++++|++|+++..++++
T Consensus 156 ~lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 221 (271)
T PRK13638 156 RYLLLDEPTAGLDPAGRTQMIAII-RRIVA-QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPG 221 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999997776666555555543 56665 48999999999 7778899999999999999888754
No 89
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-38 Score=250.23 Aligned_cols=172 Identities=15% Similarity=0.140 Sum_probs=135.3
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------H
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------L 62 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~ 62 (185)
.++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |.+.+ .
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (241)
T PRK10895 3 TLTAKNLAKAY-----KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77 (241)
T ss_pred eEEEeCcEEEe-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 46677776544 235799999999999999999999999999999999 43321 2
Q ss_pred HhhCceecCCCCCc---ch----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 63 AQIGCFVPCDSATI---SV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 63 ~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
..++ |+||++..+ ++ ++++++.+++.+..++++.+||+||+||++||+++ .+|
T Consensus 78 ~~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (241)
T PRK10895 78 RGIG-YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANP 156 (241)
T ss_pred hCeE-EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCC
Confidence 2345 888876211 21 33456667777777889999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++||||||+|+|+.....+.+. +..+++ .|.|+|++||+ .++..+||++++|++|+++..+++++
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~-l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 223 (241)
T PRK10895 157 KFILLDEPFAGVDPISVIDIKRI-IEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTE 223 (241)
T ss_pred CEEEEcCCcccCCHHHHHHHHHH-HHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHH
Confidence 99999999777766655555454 466665 58999999999 78899999999999999998877643
No 90
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-38 Score=255.75 Aligned_cols=169 Identities=18% Similarity=0.196 Sum_probs=131.3
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--------HhhCcee
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--------AQIGCFV 69 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--------~~~g~~v 69 (185)
+++++++..| +++.+++|+||++++|++++|+||||||||||+|+| |.|.+. ..++ |+
T Consensus 2 l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~-~v 75 (255)
T PRK11248 2 LQISHLYADY-----GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERG-VV 75 (255)
T ss_pred EEEEEEEEEe-----CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEE-EE
Confidence 4566665433 235799999999999999999999999999999999 444332 1234 88
Q ss_pred cCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCC
Q psy5297 70 PCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDEL 124 (185)
Q Consensus 70 ~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP 124 (185)
||.+..+ ++ +.++++.+++.+..++++.+||+|||||+++|+++ .+|+++|||||
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEP 155 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEP 155 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8875221 11 33456777888778899999999999999999999 99999999999
Q ss_pred CCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccccee--eeeEEEEec
Q psy5297 125 GRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFR--NVHESKYLY 181 (185)
Q Consensus 125 ~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~--~g~i~~~~~ 181 (185)
|+|+|+.....+.+.+ ..+.++.|.|||++||+ .++..+||++++|+ +|+++..++
T Consensus 156 t~~LD~~~~~~l~~~L-~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 214 (255)
T PRK11248 156 FGALDAFTREQMQTLL-LKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLP 214 (255)
T ss_pred CccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEec
Confidence 7776665555554543 55543258999999999 77889999999998 599988764
No 91
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-38 Score=256.74 Aligned_cols=174 Identities=16% Similarity=0.161 Sum_probs=136.4
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------H
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------L 62 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~ 62 (185)
..++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |.|.+ .
T Consensus 6 ~~l~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (265)
T PRK10253 6 ARLRGEQLTLGY-----GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80 (265)
T ss_pred cEEEEEEEEEEE-----CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHh
Confidence 356667766544 235799999999999999999999999999999999 43321 2
Q ss_pred HhhCceecCCCCCc---c-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297 63 AQIGCFVPCDSATI---S-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 63 ~~~g~~v~~~~~~~---~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
..++ |+||++..+ + .+.++++.+++.+..++++.+||+||+||++||+++
T Consensus 81 ~~i~-~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 159 (265)
T PRK10253 81 RRIG-LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLA 159 (265)
T ss_pred hheE-EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHh
Confidence 2345 888875211 1 123456677888788999999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|+++||||||+|+|+.....+.+.+ ..+.++.+.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus 160 ~~p~llllDEPt~gLD~~~~~~l~~~L-~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 160 QETAIMLLDEPTTWLDISHQIDLLELL-SELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999997777666655555544 56654348999999999 77889999999999999998877543
No 92
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-38 Score=257.19 Aligned_cols=177 Identities=13% Similarity=0.075 Sum_probs=135.7
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------- 61 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------- 61 (185)
.++++++...|-......+.+++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3566666554421000024699999999999999999999999999999999 32211
Q ss_pred --HHhhCceecCCCC--C--cc---------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC
Q psy5297 62 --LAQIGCFVPCDSA--T--IS---------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC 113 (185)
Q Consensus 62 --~~~~g~~v~~~~~--~--~~---------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l 113 (185)
...++ |+||++. . .+ .+.++++.+++. +..++++++||+|||||++||+++
T Consensus 82 ~~~~~ig-~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVS-LVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceE-EEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 22345 9998751 1 12 134456777886 678999999999999999999999
Q ss_pred -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|+++||||||+|+|+.....+...+ ..+++ .|.|||++||+ .++.++||++++|++|+++..+++++
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l-~~l~~-~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLF-KDYQK-AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999997777776655555544 66665 58999999999 77889999999999999998887553
No 93
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-38 Score=260.81 Aligned_cols=180 Identities=13% Similarity=0.042 Sum_probs=139.7
Q ss_pred CceEEEcccCCceeeecC-----CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH---------
Q psy5297 3 TGTLVLNQCRHPIVELQG-----GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV--------- 60 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~-----~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~--------- 60 (185)
++.++++|+...|-...+ +...+++||||++++|++++|+|+||||||||+++| |.|.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 457888888765532111 124699999999999999999999999999999999 3321
Q ss_pred -------HHHhhCceecCCCC--C---cc----------------------hhhHHHhhcCcc-cccccCcCccHHHHHH
Q psy5297 61 -------FLAQIGCFVPCDSA--T---IS----------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKE 105 (185)
Q Consensus 61 -------~~~~~g~~v~~~~~--~---~~----------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q 105 (185)
++.+++ |+||++. . ++ .+.++++.+++. +..++++.+||+||+|
T Consensus 83 ~~~~~~~~r~~i~-~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q 161 (327)
T PRK11308 83 DPEAQKLLRQKIQ-IVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ 161 (327)
T ss_pred CHHHHHHHhCCEE-EEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHH
Confidence 123455 9999862 1 11 234567788886 4678999999999999
Q ss_pred HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
|++||+++ .+|++||+||||+++|......+.+.+ ..++++.|.|+|++||| ..+.++||++++|++|++++.++.+
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL-~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~ 240 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLM-MDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKE 240 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999 999999999996666665555555544 56655468999999999 6777899999999999999988765
Q ss_pred C
Q psy5297 184 N 184 (185)
Q Consensus 184 ~ 184 (185)
+
T Consensus 241 ~ 241 (327)
T PRK11308 241 Q 241 (327)
T ss_pred H
Confidence 3
No 94
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=8.6e-38 Score=248.65 Aligned_cols=160 Identities=18% Similarity=0.147 Sum_probs=126.1
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCCCCCc---c
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCDSATI---S 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~~~~~---~ 77 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.+.+ ...++ |+||++..+ +
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t 91 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA-YVPQGREIFPRLT 91 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE-EeccCCcccCCCc
Confidence 5799999999999999999999999999999999 33321 12345 899886322 2
Q ss_pred h------------------hhHHHhhcC-cccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHH
Q psy5297 78 V------------------VDQIFTRVG-AADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMA 137 (185)
Q Consensus 78 ~------------------~~~~l~~~~-l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~ 137 (185)
+ ...+++.++ +.+..++++.+||+||+||++||+++ .+|+++|||||++|+|+.....+.
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~ 171 (230)
T TIGR03410 92 VEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG 171 (230)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 1 123344454 45567889999999999999999999 999999999997776666655555
Q ss_pred HHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 138 CSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 138 ~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+.+ ..++++.+.|+|++||+ .++..+||+++++++|+++..++.++
T Consensus 172 ~~l-~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 172 RVI-RRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHH-HHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 544 55554348999999999 77888999999999999998887654
No 95
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-38 Score=258.28 Aligned_cols=174 Identities=17% Similarity=0.150 Sum_probs=137.5
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~ 63 (185)
.++++++...|- +.+.+++|+||++++|++++|+||||||||||+|+| |.|.+ ..
T Consensus 3 ~l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (277)
T PRK13652 3 LIETRDLCYSYS----GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK 78 (277)
T ss_pred eEEEEEEEEEeC----CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence 466677765442 124699999999999999999999999999999999 43321 23
Q ss_pred hhCceecCCCC--C--cc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297 64 QIGCFVPCDSA--T--IS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS 117 (185)
Q Consensus 64 ~~g~~v~~~~~--~--~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ 117 (185)
.++ |+||++. . .+ .++++++.+++.+..++.+.+||+|||||++||+++ .+|+
T Consensus 79 ~i~-~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~ 157 (277)
T PRK13652 79 FVG-LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQ 157 (277)
T ss_pred heE-EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 455 9998751 1 12 134556777888888999999999999999999999 9999
Q ss_pred EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
++|||||++|+|+.....+.+.+ ..++++.+.|||++||+ .++.++||++++|++|+++..+++++
T Consensus 158 llilDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~ 224 (277)
T PRK13652 158 VLVLDEPTAGLDPQGVKELIDFL-NDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEE 224 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHH
Confidence 99999997777766655555544 66655348999999999 77789999999999999999887654
No 96
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.8e-38 Score=255.72 Aligned_cols=177 Identities=18% Similarity=0.123 Sum_probs=136.2
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------- 61 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------- 61 (185)
|..+.++++++...|- .+.+++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 2 ~~~~~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~ 76 (258)
T PRK11701 2 MDQPLLSVRGLTKLYG-----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLY 76 (258)
T ss_pred CCCceEEEeeeEEEcC-----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccc
Confidence 4556778888775441 25799999999999999999999999999999999 32211
Q ss_pred -----------HHhhCceecCCCCC-----cc----------------------hhhHHHhhcCccc-ccccCcCccHHH
Q psy5297 62 -----------LAQIGCFVPCDSAT-----IS----------------------VVDQIFTRVGAAD-SQYRGISTFMME 102 (185)
Q Consensus 62 -----------~~~~g~~v~~~~~~-----~~----------------------~~~~~l~~~~l~~-~~~~~~~~lS~g 102 (185)
...++ |+||++.. .+ .+.++++.+++.+ ..++++.+||+|
T Consensus 77 ~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 77 ALSEAERRRLLRTEWG-FVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGG 155 (258)
T ss_pred cCCHHHHHHHhhcceE-EEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHH
Confidence 11245 99987521 11 1234566778863 678999999999
Q ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEe
Q psy5297 103 MKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYL 180 (185)
Q Consensus 103 ~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~ 180 (185)
|+||++|||++ .+|+++||||||+|+|+.....+.+.+ +.++++.|.|||++||+ .++..+||++++|++|+++..+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~ 234 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLL-RGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999 999999999997666665544444433 55554358999999999 7777899999999999999888
Q ss_pred ccCC
Q psy5297 181 YHTN 184 (185)
Q Consensus 181 ~~~~ 184 (185)
++++
T Consensus 235 ~~~~ 238 (258)
T PRK11701 235 LTDQ 238 (258)
T ss_pred CHHH
Confidence 7654
No 97
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-38 Score=264.59 Aligned_cols=177 Identities=14% Similarity=0.066 Sum_probs=136.9
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH-----------HH-----------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS-----------VF----------- 61 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i-----------~~----------- 61 (185)
.+++++++..|-. ..+...+++||||++++||+++|+|+||||||||+++| |.+ .+
T Consensus 3 ~L~v~~l~~~~~~-~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGD-ESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECC-CCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 5788888765522 11124699999999999999999999999999999999 322 11
Q ss_pred --HH----hhCceecCCCCC-----cc----------------------hhhHHHhhcCccc---ccccCcCccHHHHHH
Q psy5297 62 --LA----QIGCFVPCDSAT-----IS----------------------VVDQIFTRVGAAD---SQYRGISTFMMEMKE 105 (185)
Q Consensus 62 --~~----~~g~~v~~~~~~-----~~----------------------~~~~~l~~~~l~~---~~~~~~~~lS~g~~q 105 (185)
.. .++ |+||++.. ++ .+.++++.+++.+ ..++++.+||+||+|
T Consensus 82 ~~~~~r~~~i~-~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 82 ERRNLVGAEVA-MIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHhCCCEE-EEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 11 245 99998621 11 1345667788863 468899999999999
Q ss_pred HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
|++||+++ .+|+++|+||||+++|......+.+.+ ..++++.|.|+|++||| ..+.++||++++|++|++++.++.+
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL-~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~ 239 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELL-LELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAH 239 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999 999999999997776666655555544 66665468999999999 6777899999999999999988764
Q ss_pred C
Q psy5297 184 N 184 (185)
Q Consensus 184 ~ 184 (185)
+
T Consensus 240 ~ 240 (326)
T PRK11022 240 D 240 (326)
T ss_pred H
Confidence 3
No 98
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-38 Score=255.76 Aligned_cols=175 Identities=20% Similarity=0.214 Sum_probs=136.8
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~ 63 (185)
.++++++...|-. .+.+++++|+||++++|++++|+||||||||||+|+| |.|. +..
T Consensus 4 ~l~~~~l~~~~~~--~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13650 4 IIEVKNLTFKYKE--DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRH 81 (279)
T ss_pred eEEEEeEEEEcCC--CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHh
Confidence 4677777665521 1124699999999999999999999999999999999 3321 233
Q ss_pred hhCceecCCCC--C--cc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297 64 QIGCFVPCDSA--T--IS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS 117 (185)
Q Consensus 64 ~~g~~v~~~~~--~--~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ 117 (185)
.++ |+||++. . .+ .+.++++.+++.+..++++.+||+||+||++||+++ .+|+
T Consensus 82 ~i~-~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 160 (279)
T PRK13650 82 KIG-MVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPK 160 (279)
T ss_pred hce-EEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 456 9999751 1 12 134567778888888999999999999999999999 9999
Q ss_pred EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
++||||||+|+|+.....+...+ ..++++.|.|||++||+ .++ ..||++++|++|+++..+++++
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~l-~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 161 IIILDEATSMLDPEGRLELIKTI-KGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred EEEEECCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEECCHHH
Confidence 99999997777666555555544 66665358999999999 555 6899999999999998887653
No 99
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=4.1e-38 Score=248.97 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=127.0
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------------
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------- 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------- 61 (185)
++++++...|-. ..+.+.+++++||++++|++++|+||||||||||+|+| |.+.+
T Consensus 2 l~~~~v~~~~~~-~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 2 LKCENLGKRYQE-GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred EEEEeeeEEccC-CCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 455665543311 00124699999999999999999999999999999999 33211
Q ss_pred H-HhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 62 L-AQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 62 ~-~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
. ..++ |+||++..+ ++ +.++++.+++.+..++.+.+||+||+||++||+++ .+
T Consensus 81 ~~~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 159 (221)
T TIGR02211 81 RNKKLG-FIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQ 159 (221)
T ss_pred HHhcEE-EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 1 2355 999886222 21 23456777888888999999999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEE
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHES 177 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~ 177 (185)
|+++||||||+|+|+.....+.+.+ ..++++.+.|+|++||+.+....||++++|++|+++
T Consensus 160 p~illlDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 160 PSLVLADEPTGNLDNNNAKIIFDLM-LELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999997777766655555544 566543589999999994344558999999999874
No 100
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-38 Score=255.08 Aligned_cols=172 Identities=17% Similarity=0.137 Sum_probs=134.1
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~ 64 (185)
++++++...| +++.+++|+||++++|++++|+||||||||||+++| |.|.+ ...
T Consensus 3 l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (258)
T PRK13548 3 LEARNLSVRL-----GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARR 77 (258)
T ss_pred EEEEeEEEEe-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhh
Confidence 5566665444 236799999999999999999999999999999999 33321 123
Q ss_pred hCceecCCCCC---cch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C-----
Q psy5297 65 IGCFVPCDSAT---ISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T----- 114 (185)
Q Consensus 65 ~g~~v~~~~~~---~~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~----- 114 (185)
++ |+||++.. .++ +.++++.+++.+..++.+.+||+|||||++||+++ .
T Consensus 78 i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~ 156 (258)
T PRK13548 78 RA-VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPD 156 (258)
T ss_pred eE-EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 45 88887522 121 23456777888888999999999999999999999 5
Q ss_pred -CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 -ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 -~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+++||||||+|+|+.....+...+ ..+.++.+.|||++||+ .++..+||++++|++|+++..+++++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 157 GPPRWLLLDEPTSALDLAHQHHVLRLA-RQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 89999999997777766655555544 55552258999999999 77888999999999999988776543
No 101
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=9.8e-38 Score=253.03 Aligned_cols=175 Identities=16% Similarity=0.141 Sum_probs=136.9
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV--------------------- 60 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~--------------------- 60 (185)
++.++++++...| +++.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 2 ~~~l~~~nl~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~ 76 (262)
T PRK09984 2 QTIIRVEKLAKTF-----NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76 (262)
T ss_pred CcEEEEeeEEEEe-----CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccc
Confidence 3467777776554 236799999999999999999999999999999999 2210
Q ss_pred -------HHHhhCceecCCCCCc---ch-----------------------------hhHHHhhcCcccccccCcCccHH
Q psy5297 61 -------FLAQIGCFVPCDSATI---SV-----------------------------VDQIFTRVGAADSQYRGISTFMM 101 (185)
Q Consensus 61 -------~~~~~g~~v~~~~~~~---~~-----------------------------~~~~l~~~~l~~~~~~~~~~lS~ 101 (185)
+...++ |+||++..+ ++ +.++++.+++.+..++.+.+||+
T Consensus 77 ~~~~~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 155 (262)
T PRK09984 77 LARDIRKSRANTG-YIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSG 155 (262)
T ss_pred cchhHHHHHhheE-EEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCH
Confidence 012344 888875211 11 23455667887778999999999
Q ss_pred HHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297 102 EMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 102 g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~ 179 (185)
|||||++|||++ .+|+++||||||+|+|......+.+.+ +.+.++.|.|||++||+ .++..+||++++|++|++...
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 156 GQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTL-RDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999 999999999997777666655555544 66654358999999999 678899999999999999988
Q ss_pred eccCC
Q psy5297 180 LYHTN 184 (185)
Q Consensus 180 ~~~~~ 184 (185)
+++++
T Consensus 235 g~~~~ 239 (262)
T PRK09984 235 GSSQQ 239 (262)
T ss_pred CCHHH
Confidence 87654
No 102
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.2e-38 Score=254.49 Aligned_cols=159 Identities=18% Similarity=0.130 Sum_probs=127.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------------------HHHhhCce
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV--------------------------FLAQIGCF 68 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~--------------------------~~~~~g~~ 68 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.+. +...++ |
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~-~ 91 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG-M 91 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeE-E
Confidence 5799999999999999999999999999999999 3221 122345 8
Q ss_pred ecCCCCCc---ch----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEe
Q psy5297 69 VPCDSATI---SV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIID 122 (185)
Q Consensus 69 v~~~~~~~---~~----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllD 122 (185)
+||++..+ ++ +.++++.+++.+..++.+.+||+||+||++||+++ .+|+++|||
T Consensus 92 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 171 (252)
T TIGR03005 92 VFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFD 171 (252)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 88876322 11 23456677887788899999999999999999999 999999999
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 123 ELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 123 EP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
|||+|+|+.....+.+.+ +.+.++.+.|+|++||+ .++..+||++++|++|+++..++++
T Consensus 172 EP~~~LD~~~~~~l~~~l-~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 232 (252)
T TIGR03005 172 EVTSALDPELVGEVLNVI-RRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPD 232 (252)
T ss_pred CCcccCCHHHHHHHHHHH-HHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 997777666555554544 55554348999999999 7778899999999999999887654
No 103
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-38 Score=258.51 Aligned_cols=177 Identities=15% Similarity=0.119 Sum_probs=137.9
Q ss_pred eEEEcccCCceeeecC-CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------H
Q psy5297 5 TLVLNQCRHPIVELQG-GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV--------------F 61 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~-~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~--------------~ 61 (185)
.+++++++..|-.... +.+++++|+||++++|++++|+||||||||||+++| |.|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 5777887765532111 135699999999999999999999999999999999 4321 1
Q ss_pred HHhhCceecCCCC--Cc--c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 62 LAQIGCFVPCDSA--TI--S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 62 ~~~~g~~v~~~~~--~~--~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
...++ |+||++. .+ + .+.++++.+++.+..++++.+||+||+||++||+++ .+
T Consensus 84 ~~~i~-~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 162 (280)
T PRK13633 84 RNKAG-MVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR 162 (280)
T ss_pred hhheE-EEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 23345 8998751 11 1 134556778888888999999999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++|||||++|+|+.....+...+ ..++++.|.|||++||+ .++. .||++++|++|+++..+++++
T Consensus 163 p~llllDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tillvtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 163 PECIIFDEPTAMLDPSGRREVVNTI-KELNKKYGITIILITHYMEEAV-EADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecChHHHh-cCCEEEEEECCEEEEecCHHH
Confidence 9999999998877777766665544 66654358999999999 5555 499999999999999887654
No 104
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-37 Score=250.28 Aligned_cols=171 Identities=17% Similarity=0.176 Sum_probs=133.9
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~ 64 (185)
++++++...| +++.+++|+||++++|++++|+||||||||||+|+| |.+.+ ...
T Consensus 3 l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (255)
T PRK11231 3 LRTENLTVGY-----GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77 (255)
T ss_pred EEEEeEEEEE-----CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhh
Confidence 6677766544 236799999999999999999999999999999999 32211 223
Q ss_pred hCceecCCCCCc---ch-------------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 65 IGCFVPCDSATI---SV-------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 65 ~g~~v~~~~~~~---~~-------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
++ |+||+...+ ++ +.++++.+++.+..++++.+||+||+||++||+++ .+
T Consensus 78 i~-~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 156 (255)
T PRK11231 78 LA-LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQD 156 (255)
T ss_pred eE-EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcC
Confidence 45 888875211 11 23445667777778999999999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++||||||+|+|+.....+.+.+ ..+++ .+.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l-~~l~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 224 (255)
T PRK11231 157 TPVVLLDEPTTYLDINHQVELMRLM-RELNT-QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEE 224 (255)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHH-HHHHH-CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHH
Confidence 9999999997777666655555544 55655 48999999999 77889999999999999998876553
No 105
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=250.38 Aligned_cols=173 Identities=14% Similarity=0.139 Sum_probs=132.4
Q ss_pred CCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH--------------------
Q psy5297 2 GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-------------------- 60 (185)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-------------------- 60 (185)
+.|.++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 3 ~~~~l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 77 (253)
T PRK14242 3 SPPKMEARGLSFFY-----GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77 (253)
T ss_pred CCcEEEEeeeEEEE-----CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccc
Confidence 46778888887655 225699999999999999999999999999999999 4321
Q ss_pred -------HHHhhCceecCCCCCc--chh----------------------hHHHhhcCccc----ccccCcCccHHHHHH
Q psy5297 61 -------FLAQIGCFVPCDSATI--SVV----------------------DQIFTRVGAAD----SQYRGISTFMMEMKE 105 (185)
Q Consensus 61 -------~~~~~g~~v~~~~~~~--~~~----------------------~~~l~~~~l~~----~~~~~~~~lS~g~~q 105 (185)
+...++ |+||++..+ ++. .++++.+++.+ ..++++.+||+||||
T Consensus 78 ~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 78 PHVDVVELRRRVG-MVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQ 156 (253)
T ss_pred cccCHHHHhhcEE-EEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 012345 888876322 221 12334455532 357788999999999
Q ss_pred HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
|++||+++ .+|+++||||||+|+|+.....+.+.+ ..+++ +.|||++||+ .++.++||++++|++|+++..++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELI-HELKA--RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc--CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999 999999999997777666655555544 55543 6899999999 7788999999999999999887654
No 106
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=4.4e-38 Score=249.33 Aligned_cols=158 Identities=19% Similarity=0.223 Sum_probs=128.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH---------HhhCceecCCCCCc---c-----
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL---------AQIGCFVPCDSATI---S----- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~---------~~~g~~v~~~~~~~---~----- 77 (185)
+.+++|+||++++|++++|+||||||||||+++| |.+.+. ..++ |+||++..+ +
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~-~~~q~~~~~~~~t~~~~~ 91 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIG-SLIESPPLYENLTARENL 91 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEE-EEcCCCCccccCCHHHHH
Confidence 5799999999999999999999999999999999 433221 2344 888875222 2
Q ss_pred ------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHH
Q psy5297 78 ------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAREL 144 (185)
Q Consensus 78 ------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l 144 (185)
.+.++++.+++++..++++.+||+||+||+++|+++ .+|+++|||||++|+|+.....+.+.+ ..+
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L-~~~ 170 (223)
T TIGR03740 92 KVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELI-RSF 170 (223)
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHH-HHH
Confidence 234556778888888999999999999999999999 999999999997777776655555544 566
Q ss_pred HhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 145 ASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 145 ~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
++ .+.++|++||+ .++.++||++++|++|++...+++.
T Consensus 171 ~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 171 PE-QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred HH-CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 55 58899999999 7778899999999999999887654
No 107
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=6e-38 Score=251.30 Aligned_cols=171 Identities=17% Similarity=0.156 Sum_probs=132.9
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------H
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------L 62 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~ 62 (185)
.++++++...+ +.+.+++|+||++++|++++|+||||||||||+|+| |.+.+ .
T Consensus 2 ~i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (242)
T TIGR03411 2 ILYLEGLSVSF-----DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76 (242)
T ss_pred eEEEEeeEEEc-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHh
Confidence 45666665544 235799999999999999999999999999999999 33221 1
Q ss_pred HhhCceecCCCCCc---c-----------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHH
Q psy5297 63 AQIGCFVPCDSATI---S-----------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVI 110 (185)
Q Consensus 63 ~~~g~~v~~~~~~~---~-----------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia 110 (185)
..++ |+||++..+ + .+.++++.+++.+..++++++||+||+||++||
T Consensus 77 ~~i~-~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~la 155 (242)
T TIGR03411 77 AGIG-RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIG 155 (242)
T ss_pred cCee-EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 1244 888875211 1 123455677888788899999999999999999
Q ss_pred HhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 111 KKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 111 ~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++ .+|+++||||||+|+|+.....+.+.+ ..+++ +.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus 156 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 156 MLLMQDPKLLLLDEPVAGMTDEETEKTAELL-KSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHH-HHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 999 999999999997776666655555543 55554 6899999999 77888999999999999998876543
No 108
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-37 Score=250.51 Aligned_cols=175 Identities=16% Similarity=0.143 Sum_probs=133.8
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-------------------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV------------------- 60 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~------------------- 60 (185)
|.++.++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 8 ~~~~~l~i~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 8 MKQEVYQINGMNLWY-----GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred cCCceEEEeeEEEEE-----CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence 456677888877644 235799999999999999999999999999999999 4321
Q ss_pred --------HHHhhCceecCCCCCc--ch----------------------hhHHHhhcCcc----cccccCcCccHHHHH
Q psy5297 61 --------FLAQIGCFVPCDSATI--SV----------------------VDQIFTRVGAA----DSQYRGISTFMMEMK 104 (185)
Q Consensus 61 --------~~~~~g~~v~~~~~~~--~~----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~ 104 (185)
+...++ |+||++..+ ++ ++++++.+++. +..++++.+||+||+
T Consensus 83 ~~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 83 KGKVDLVELRKNIG-MVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQ 161 (259)
T ss_pred ccccCHHHHhhceE-EEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 012244 888875221 11 12234455653 245788899999999
Q ss_pred HHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEecc
Q psy5297 105 ETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYH 182 (185)
Q Consensus 105 q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~ 182 (185)
||++||+++ .+|+++||||||+|+|+.....+.+.+ ..+++ +.|+|++||+ .++.++||++++|++|+++..+++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 238 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELI-LKLKE--KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDT 238 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHhc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999 999999999997777766655555544 55543 6899999999 778899999999999999998876
Q ss_pred CC
Q psy5297 183 TN 184 (185)
Q Consensus 183 ~~ 184 (185)
++
T Consensus 239 ~~ 240 (259)
T PRK14274 239 NK 240 (259)
T ss_pred HH
Confidence 53
No 109
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-38 Score=263.41 Aligned_cols=177 Identities=14% Similarity=0.102 Sum_probs=136.3
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH-----------HH-----------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS-----------VF----------- 61 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i-----------~~----------- 61 (185)
.++++|+...|-. .++...+++|+||++++||+++|+|+||||||||+|+| |.. .+
T Consensus 3 ~L~v~~l~~~y~~-~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKT-SDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeC-CCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 6788888776532 12335799999999999999999999999999999999 321 11
Q ss_pred --H----HhhCceecCCCCC-----cc---------------------------hhhHHHhhcCccc---ccccCcCccH
Q psy5297 62 --L----AQIGCFVPCDSAT-----IS---------------------------VVDQIFTRVGAAD---SQYRGISTFM 100 (185)
Q Consensus 62 --~----~~~g~~v~~~~~~-----~~---------------------------~~~~~l~~~~l~~---~~~~~~~~lS 100 (185)
. ..++ |+||++.. ++ .+.++++.+++.+ ..++.+.+||
T Consensus 82 ~~~~~~~~~i~-~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 82 ERRKLVGHNVS-MIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHhCCCEE-EEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 0 1245 99998621 11 1234466677764 3578899999
Q ss_pred HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297 101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK 178 (185)
Q Consensus 101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~ 178 (185)
+||+||++||+++ .+|++||+||||+++|......+.+.+ ..+.++.|.|+|++||| ..+.++||++++|++|++++
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL-~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive 239 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLL-TRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE 239 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999 999999999997776665555555544 66665458999999999 77788999999999999999
Q ss_pred EeccCC
Q psy5297 179 YLYHTN 184 (185)
Q Consensus 179 ~~~~~~ 184 (185)
.++.++
T Consensus 240 ~g~~~~ 245 (330)
T PRK15093 240 TAPSKE 245 (330)
T ss_pred ECCHHH
Confidence 887643
No 110
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-37 Score=244.37 Aligned_cols=152 Identities=20% Similarity=0.317 Sum_probs=122.2
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhhCceecCCCCCc---ch-
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQIGCFVPCDSATI---SV- 78 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~g~~v~~~~~~~---~~- 78 (185)
+.+++|+||++++| +++|+||||||||||+|+| |.|. +..+++ |+||++..+ ++
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~ 90 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIG-YLPQEFGVYPNFTVR 90 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheE-EecCCCcccccCCHH
Confidence 57999999999999 9999999999999999999 4332 123455 899876322 21
Q ss_pred --------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHH
Q psy5297 79 --------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMA 137 (185)
Q Consensus 79 --------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~ 137 (185)
+.++++.+++.+..++++.+||+|||||++||+++ .+|+++||||||+|+|+.....+.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 170 (211)
T cd03264 91 EFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR 170 (211)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 23456677887778899999999999999999999 999999999997776666555554
Q ss_pred HHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297 138 CSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 138 ~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~ 179 (185)
+.+ +.+++ +.|+|++||+ .++.++||++++|++|+++..
T Consensus 171 ~~l-~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~ 210 (211)
T cd03264 171 NLL-SELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210 (211)
T ss_pred HHH-HHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEec
Confidence 433 66654 5899999999 777789999999999999764
No 111
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=6e-38 Score=253.49 Aligned_cols=171 Identities=22% Similarity=0.217 Sum_probs=133.4
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~ 64 (185)
++++++...+ +++.+++|+||++++|++++|+||||||||||+|+| |.+.+ ...
T Consensus 2 l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (256)
T TIGR03873 2 LRLSRVSWSA-----GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARR 76 (256)
T ss_pred ceEEeEEEEE-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhh
Confidence 4556665444 236799999999999999999999999999999999 33222 223
Q ss_pred hCceecCCCCC---cc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 65 IGCFVPCDSAT---IS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 65 ~g~~v~~~~~~---~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
++ |+||++.. .+ .+.++++.+++.+..++++.+||+||+||++||+++ .+
T Consensus 77 i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (256)
T TIGR03873 77 VA-LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQE 155 (256)
T ss_pred eE-EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 45 88887521 11 123345667777778999999999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++||||||+|+|+.....+.+.+ ..+++ .+.|||++||+ .++.++||++++|++|+++..++.++
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 223 (256)
T TIGR03873 156 PKLLLLDEPTNHLDVRAQLETLALV-RELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPRE 223 (256)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHH-HHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHH
Confidence 9999999997777666555555544 66665 58999999999 77889999999999999998887654
No 112
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-38 Score=274.34 Aligned_cols=176 Identities=18% Similarity=0.195 Sum_probs=140.0
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------H---------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------F--------- 61 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------~--------- 61 (185)
|.++.++++|+...| +++.+++|+||++++|++++|+||||||||||+|+| |... +
T Consensus 1 ~~~~~l~~~nl~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 1 MMEYLLEMKNITKTF-----GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASN 75 (506)
T ss_pred CCCceEEEeeeEEEe-----CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC
Confidence 455667888876554 235799999999999999999999999999999999 3221 1
Q ss_pred -----HHhhCceecCCCCC---cc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHH
Q psy5297 62 -----LAQIGCFVPCDSAT---IS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATV 109 (185)
Q Consensus 62 -----~~~~g~~v~~~~~~---~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~i 109 (185)
...++ |+||++.. ++ .+.++++.+++.+..++++++||+|||||++|
T Consensus 76 ~~~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 76 IRDTERAGIA-IIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred HHHHHHCCeE-EEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHH
Confidence 12245 88887511 11 13456677888888899999999999999999
Q ss_pred HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++ .+|+++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDII-RDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccccc
Confidence 9999 999999999997777766655555544 56665 58999999999 78889999999999999998887765
No 113
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=254.54 Aligned_cols=178 Identities=17% Similarity=0.150 Sum_probs=139.1
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH----------HH---------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV----------SV--------- 60 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~----------i~--------- 60 (185)
|-+..++++++...| .+..+.+++|+||++++|++++|+||||||||||+|+| |. |.
T Consensus 1 ~~~~~l~i~~l~~~~---~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~ 77 (282)
T PRK13640 1 MKDNIVEFKHVSFTY---PDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK 77 (282)
T ss_pred CCCceEEEEEEEEEc---CCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC
Confidence 556678888877654 22224699999999999999999999999999999999 21 11
Q ss_pred ----HHHhhCceecCCCC----Ccc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHH
Q psy5297 61 ----FLAQIGCFVPCDSA----TIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIK 111 (185)
Q Consensus 61 ----~~~~~g~~v~~~~~----~~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~ 111 (185)
+..+++ |+||++. ..+ .+.++++.+++.+..++++++||+||+||++||+
T Consensus 78 ~~~~~~~~ig-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lar 156 (282)
T PRK13640 78 TVWDIREKVG-IVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAG 156 (282)
T ss_pred CHHHHHhheE-EEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHH
Confidence 123455 8998752 112 1345677788888889999999999999999999
Q ss_pred hC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 112 KC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 112 ~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
++ .+|+++|||||++|+|+.....+.+.+ ..+.++.|.|||++||+ .++ ..||++++|++|++++.+++++
T Consensus 157 al~~~P~llllDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tvli~tH~~~~~-~~~d~i~~l~~G~i~~~g~~~~ 229 (282)
T PRK13640 157 ILAVEPKIIILDESTSMLDPAGKEQILKLI-RKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVE 229 (282)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEeCCHHH
Confidence 99 999999999997777666655555544 56655358999999999 555 6899999999999999887653
No 114
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1e-37 Score=245.49 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=122.2
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------HHHhhCceecCCCCCc--
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------FLAQIGCFVPCDSATI-- 76 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~~~~~g~~v~~~~~~~-- 76 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.+. +...++ |+||++..+
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~-~v~q~~~~~~~ 92 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIG-VVFQDFRLLPD 92 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheE-EEecCchhccC
Confidence 4699999999999999999999999999999999 3221 123455 999876322
Q ss_pred -c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297 77 -S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG 133 (185)
Q Consensus 77 -~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~ 133 (185)
+ .+.++++.+++++..++++.+||+||+||++||+++ .+|+++||||||+|+|+...
T Consensus 93 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 172 (214)
T cd03292 93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT 172 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 1 123456777888778899999999999999999999 99999999999777777665
Q ss_pred hHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297 134 FGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE 176 (185)
Q Consensus 134 ~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i 176 (185)
..+.+.+ +.+++ .+.|+|++||+ .++..+||++++|++|++
T Consensus 173 ~~~~~~l-~~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 173 WEIMNLL-KKINK-AGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHH-HHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 5555544 56655 48999999999 777889999999999874
No 115
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-38 Score=274.63 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=139.4
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------- 61 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------- 61 (185)
|.++.++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 1 ~~~~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~ 75 (510)
T PRK09700 1 MATPYISMAGIGKSF-----GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK 75 (510)
T ss_pred CCCceEEEeeeEEEc-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHH
Confidence 455667888876544 235799999999999999999999999999999999 44322
Q ss_pred ---HHhhCceecCCCCC---cc----------------------------hhhHHHhhcCcccccccCcCccHHHHHHHH
Q psy5297 62 ---LAQIGCFVPCDSAT---IS----------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETA 107 (185)
Q Consensus 62 ---~~~~g~~v~~~~~~---~~----------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~ 107 (185)
...++ |+||++.. ++ .+.++++.+++.+..++++++||+|||||+
T Consensus 76 ~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 76 LAAQLGIG-IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred HHHHCCeE-EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence 12345 88887421 11 123456677888788999999999999999
Q ss_pred HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+||+++ .+|+++||||||+|+|+.....+.+. +..+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~-~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI-MNQLRK-EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 999999 99999999999777666555555554 466665 58999999999 78889999999999999998887765
No 116
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.7e-37 Score=242.75 Aligned_cols=150 Identities=19% Similarity=0.239 Sum_probs=121.2
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhCceecCCCC----Ccc
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIGCFVPCDSA----TIS 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g~~v~~~~~----~~~ 77 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.|.+ ...++ |+||++. ..+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~~~t 92 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVG-LVFQNPDDQFFGPT 92 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhce-EEecChhhhcCCCc
Confidence 5799999999999999999999999999999999 43321 23455 9998752 112
Q ss_pred h---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhH
Q psy5297 78 V---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFG 135 (185)
Q Consensus 78 ~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~ 135 (185)
+ +.++++.+++.+..++++++||+||+||++||+++ .+|+++||||||+|+|+.....
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 172 (211)
T cd03225 93 VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172 (211)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 1 22356677888778899999999999999999999 9999999999977777666555
Q ss_pred HHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297 136 MACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH 175 (185)
Q Consensus 136 ~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~ 175 (185)
+.+.+ ..+++ .+.|+|++||+ .++..+||++++|++|+
T Consensus 173 ~~~~l-~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 173 LLELL-KKLKA-EGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHH-HHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 55544 56665 48999999999 77888999999999885
No 117
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.3e-37 Score=243.32 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=121.9
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------HHhhCceecCCCCCc---
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------LAQIGCFVPCDSATI--- 76 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------~~~~g~~v~~~~~~~--- 76 (185)
+.+++++||++++|++++|+||||||||||+|+| |.+.+ ...++ |+||++..+
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~ 91 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG-MVFQQFNLFPHL 91 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce-EEecccccCCCC
Confidence 5799999999999999999999999999999999 33211 22345 899876322
Q ss_pred ch----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297 77 SV----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG 133 (185)
Q Consensus 77 ~~----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~ 133 (185)
++ +.++++.+++.+..++++.+||+||+||+++|+++ .+|+++||||||+|+|+...
T Consensus 92 t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 171 (213)
T cd03262 92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171 (213)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 21 23455667887778999999999999999999999 99999999999777766655
Q ss_pred hHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297 134 FGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE 176 (185)
Q Consensus 134 ~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i 176 (185)
..+.+. +..+++ .+.|+|++||+ .++.++||++++|++|++
T Consensus 172 ~~l~~~-l~~~~~-~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 172 GEVLDV-MKDLAE-EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHH-HHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 555554 366665 58999999999 778899999999999874
No 118
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-37 Score=252.79 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=140.7
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------HHHhhCceecCCCCCcc--
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------FLAQIGCFVPCDSATIS-- 77 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~~~~~g~~v~~~~~~~~-- 77 (185)
.-++|+||+++.|||++|.|-+|||||||+|++ |.|. ++.+..++|||....+|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 368999999999999999999999999999999 4332 23444458999875555
Q ss_pred ----------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChh
Q psy5297 78 ----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGF 134 (185)
Q Consensus 78 ----------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~ 134 (185)
.+.++++.+|+.++.++++.+||||||||+.+|||+ .+|+++|||||||.+||+-+.
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~ 201 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT 201 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence 366788999999999999999999999999999999 999999999999999999988
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 135 GMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 135 ~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
.++..++ .+.++.++||+++||| .|+.++.|||.+|++|+++..|+|+++
T Consensus 202 ~mQdeLl-~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eI 252 (386)
T COG4175 202 EMQDELL-ELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEI 252 (386)
T ss_pred HHHHHHH-HHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHH
Confidence 8888774 4444468999999999 999999999999999999999998764
No 119
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-37 Score=252.24 Aligned_cols=178 Identities=16% Similarity=0.127 Sum_probs=137.2
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------ 60 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------ 60 (185)
|.++.++++++...|- ++.+++++|+||++++|++++|+||||||||||+|+| |.|.
T Consensus 3 ~~~~~l~i~~l~~~~~---~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~ 79 (269)
T PRK13648 3 DKNSIIVFKNVSFQYQ---SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFE 79 (269)
T ss_pred CCCceEEEEEEEEEcC---CCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence 3455677777765442 1224599999999999999999999999999999999 3322
Q ss_pred -HHHhhCceecCCCC-Cc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297 61 -FLAQIGCFVPCDSA-TI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 61 -~~~~~g~~v~~~~~-~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
+..+++ |+||++. .+ + .+..+++.+++.+..++++.+||+||+||++||+++
T Consensus 80 ~~~~~i~-~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 80 KLRKHIG-IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred HHHhhee-EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 123455 8888752 11 1 133556778888888999999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|+++||||||+|+|+.....+.+.+ ..+.++.+.|+|++||+ .++. .||++++|++|+++..+++++
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L-~~~~~~~~~tiiivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLV-RKVKSEHNITIISITHDLSEAM-EADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCchHHh-cCCEEEEEECCEEEEecCHHH
Confidence 999999999997777766655555544 55554348999999999 6665 499999999999998887643
No 120
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7e-38 Score=275.18 Aligned_cols=172 Identities=17% Similarity=0.190 Sum_probs=137.0
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL-------------- 62 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~-------------- 62 (185)
.++++++...| +.+.+++|+||++++|++++|+||||||||||||+| |.|.+.
T Consensus 11 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 85 (510)
T PRK15439 11 LLCARSISKQY-----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85 (510)
T ss_pred eEEEEeEEEEe-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 46666665544 235799999999999999999999999999999999 433221
Q ss_pred HhhCceecCCCCCc---c-----------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEE
Q psy5297 63 AQIGCFVPCDSATI---S-----------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVII 121 (185)
Q Consensus 63 ~~~g~~v~~~~~~~---~-----------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llll 121 (185)
..++ |+||++..+ + .+.++++.+++.+..++++++||+|||||++||+++ .+|+++||
T Consensus 86 ~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllL 164 (510)
T PRK15439 86 LGIY-LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILIL 164 (510)
T ss_pred CCEE-EEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1245 999986222 2 234567788888888999999999999999999999 99999999
Q ss_pred eCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 122 DEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||||+|+|+.....+...+ +.+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus 165 DEPt~~LD~~~~~~l~~~l-~~~~~-~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (510)
T PRK15439 165 DEPTASLTPAETERLFSRI-RELLA-QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTAD 226 (510)
T ss_pred ECCCCCCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHH
Confidence 9997776666655555543 66665 58999999999 77889999999999999998877654
No 121
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.4e-37 Score=245.37 Aligned_cols=171 Identities=18% Similarity=0.139 Sum_probs=128.3
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------H
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------F 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~ 61 (185)
++++++...|-.. +....+++|+||++++|++++|+||||||||||+++| |.+. +
T Consensus 2 l~~~~v~~~~~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 2 LEVKNLSVSFPTG-GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred eEEEeeeEeccCC-CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 4566665444110 0012699999999999999999999999999999999 3321 1
Q ss_pred HHhhCceecCCCC--C---cch-----------------------hhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHh
Q psy5297 62 LAQIGCFVPCDSA--T---ISV-----------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKK 112 (185)
Q Consensus 62 ~~~~g~~v~~~~~--~---~~~-----------------------~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~ 112 (185)
..+++ |+||++. . .++ +.++++.+++. ...++++.+||+||+||++||++
T Consensus 81 ~~~i~-~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 159 (228)
T cd03257 81 RKEIQ-MVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA 159 (228)
T ss_pred hccEE-EEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence 22455 8888861 1 121 01345667774 56788999999999999999999
Q ss_pred C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297 113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~ 179 (185)
+ .+|+++||||||+|+|+.....+.+.+ ..++++.+.|||++||+ .++..+||++++|++|+++..
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLL-KKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEec
Confidence 9 999999999997777766655555544 55554348999999999 777789999999999998754
No 122
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=4.1e-37 Score=243.64 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=129.3
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------H
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------F 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~ 61 (185)
++++++...+- +.+.+++|+||++++|++++|+||||||||||+|+| |.|. +
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~ 77 (222)
T PRK10908 2 IRFEHVSKAYL----GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77 (222)
T ss_pred EEEEeeEEEec----CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHH
Confidence 45566554331 125799999999999999999999999999999999 3321 1
Q ss_pred HHhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 62 LAQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 62 ~~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
...++ |+||++..+ ++ +.++++.+++.+..++++++||+|||||+++|+++ .+|
T Consensus 78 ~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (222)
T PRK10908 78 RRQIG-MIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKP 156 (222)
T ss_pred HhheE-EEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCC
Confidence 23455 999876321 21 23456777888778899999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK 178 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~ 178 (185)
+++|||||++|+|+.....+.+.+ ..+++ .+.++|++||+ .++..+||++++|++|+++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 157 AVLLADEPTGNLDDALSEGILRLF-EEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999997776665555555544 56655 48899999999 77888999999999999854
No 123
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=5.3e-38 Score=253.50 Aligned_cols=172 Identities=18% Similarity=0.179 Sum_probs=133.6
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH--hhCceecCCC
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA--QIGCFVPCDS 73 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~--~~g~~v~~~~ 73 (185)
+.+++++++..| +++.+++|+||++++|++++|+||||||||||+|+| |.|.+.. .++ |+||++
T Consensus 3 ~~l~~~~l~~~~-----~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~-~v~q~~ 76 (251)
T PRK09544 3 SLVSLENVSVSF-----GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIG-YVPQKL 76 (251)
T ss_pred cEEEEeceEEEE-----CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEE-Eecccc
Confidence 356777766544 235699999999999999999999999999999999 3333322 345 888875
Q ss_pred CCc-----c--------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297 74 ATI-----S--------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG 133 (185)
Q Consensus 74 ~~~-----~--------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~ 133 (185)
... + .+..+++.+++.+..++++.+||+||+||++||+++ .+|+++||||||+|+|+...
T Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 156 (251)
T PRK09544 77 YLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQ 156 (251)
T ss_pred ccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 211 1 134456778888888999999999999999999999 99999999999777766655
Q ss_pred hHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 134 FGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 134 ~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
..+.+.+ ..+.++.+.|+|++||+ .++.++||++++|++ +++..++++
T Consensus 157 ~~l~~~L-~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~ 205 (251)
T PRK09544 157 VALYDLI-DQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPE 205 (251)
T ss_pred HHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHH
Confidence 5555544 55554348999999999 778899999999975 787777654
No 124
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.4e-37 Score=247.14 Aligned_cols=171 Identities=13% Similarity=0.103 Sum_probs=129.1
Q ss_pred ceEEEcccCCceeeecCCc--eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------
Q psy5297 4 GTLVLNQCRHPIVELQGGV--SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------ 61 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~--~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------ 61 (185)
+.+++++++..| .++. ..+++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 5 ~~l~~~~l~~~~---~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 5 NIVEVHHLKKSV---GQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred ceEEEeeeEEEc---cCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHH
Confidence 456677765433 2211 3599999999999999999999999999999999 33321
Q ss_pred ----H-HhhCceecCCCCCc---ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297 62 ----L-AQIGCFVPCDSATI---SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK 112 (185)
Q Consensus 62 ----~-~~~g~~v~~~~~~~---~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~ 112 (185)
. ..++ |+||++..+ ++ +.++++.+++.+..++++.+||+||+||++||++
T Consensus 82 ~~~~~~~~i~-~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 82 RAKLRAKHVG-FVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHHHhheEE-EEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHH
Confidence 1 2345 888876221 21 2345677788877889999999999999999999
Q ss_pred C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEE
Q psy5297 113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~ 179 (185)
+ .+|+++||||||+|+|+.....+.+.+ ..++++.+.|||++||+.+..+.||++++|++|+++++
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLL-FSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9 999999999997777666555554544 56654358899999999433456999999999998643
No 125
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=4.2e-38 Score=238.14 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=134.5
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHh----------hCceecCCCCCcc---------
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQ----------IGCFVPCDSATIS--------- 77 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~----------~g~~v~~~~~~~~--------- 77 (185)
..-.++++++.||+++|+||+||||||||++| |.|++.++ -.+++||+.+.+.
T Consensus 14 ~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 14 LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 45567888999999999999999999999999 45544321 1137777764443
Q ss_pred ---------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHH
Q psy5297 78 ---------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIA 141 (185)
Q Consensus 78 ---------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il 141 (185)
.++.++.++|+.++.++.+.+||||||||+++||++ .+.+++||||||+.+||.-+.++..++
T Consensus 94 LGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv- 172 (231)
T COG3840 94 LGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALV- 172 (231)
T ss_pred ccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHH-
Confidence 366788899999999999999999999999999999 999999999998888887777777655
Q ss_pred HHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 142 RELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 142 ~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
..+.++++.|++|+||. .++.+++++++++++|+|.+.++.++
T Consensus 173 ~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~ 216 (231)
T COG3840 173 SQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQE 216 (231)
T ss_pred HHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHH
Confidence 66666689999999998 99999999999999999999987654
No 126
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-37 Score=253.12 Aligned_cols=172 Identities=14% Similarity=0.142 Sum_probs=135.8
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH---------------HH
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV---------------FL 62 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~---------------~~ 62 (185)
++++++...|- +.+.+++|+||++++||+++|+||||||||||+|+| |.|. +.
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (275)
T PRK13639 2 LETRDLKYSYP----DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77 (275)
T ss_pred EEEEEEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHH
Confidence 45566554431 124699999999999999999999999999999999 4331 12
Q ss_pred HhhCceecCCCC--Cc--c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 63 AQIGCFVPCDSA--TI--S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 63 ~~~g~~v~~~~~--~~--~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
..++ |+||++. .+ + .+.++++.+++.+..++++.+||+||+||++||+++ .+|
T Consensus 78 ~~i~-~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p 156 (275)
T PRK13639 78 KTVG-IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKP 156 (275)
T ss_pred hheE-EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 3455 9999851 11 1 133466778888888999999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++||||||+|+|+.....+.+.+ ..+++ .+.|||++||+ .++.++||++++|++|+++..+++++
T Consensus 157 ~llllDEPt~gLD~~~~~~l~~~l-~~l~~-~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 223 (275)
T PRK13639 157 EIIVLDEPTSGLDPMGASQIMKLL-YDLNK-EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKE 223 (275)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHH-HHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999997777776666555544 56665 48999999999 77788999999999999999887653
No 127
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=250.34 Aligned_cols=172 Identities=15% Similarity=0.142 Sum_probs=130.1
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------- 60 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------- 60 (185)
+.+++++++..| +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 11 ~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 11 PQIKVENLNLWY-----GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred eeEEEeeeEEEe-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc
Confidence 345555555433 235799999999999999999999999999999999 4211
Q ss_pred -----HHHhhCceecCCCCCc--ch---------------------hhHHHhhcCcc----cccccCcCccHHHHHHHHH
Q psy5297 61 -----FLAQIGCFVPCDSATI--SV---------------------VDQIFTRVGAA----DSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 61 -----~~~~~g~~v~~~~~~~--~~---------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~ 108 (185)
+...++ |+||++..+ ++ +.++++.+++. +..++++.+||+||+||++
T Consensus 86 ~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 86 VDVVELRKNVG-MVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred chHHHHhhhEE-EEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH
Confidence 112345 888876322 21 22345556652 3467889999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|||++ .+|+++||||||+|+|+.....+.+.+ +.+++ +.|||++||+ .++.++||++++|++|+++..+++++
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~l~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLI-MNLKK--DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHH-HHHhh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999 999999999997777666655554443 55543 7899999999 77789999999999999998877543
No 128
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=6.8e-38 Score=261.79 Aligned_cols=179 Identities=16% Similarity=0.116 Sum_probs=136.4
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH----------HHH----------
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV----------SVF---------- 61 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~----------i~~---------- 61 (185)
++.++++|+...|-. .++...+++|+||++++||+++|+|+||||||||+++| |. |.+
T Consensus 10 ~~~L~i~~l~~~~~~-~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 10 DALLDVKDLRVTFST-PDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CceEEEeCeEEEEec-CCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 456788888765532 11235699999999999999999999999999999999 21 111
Q ss_pred ------H-HhhCceecCCCC--C---cc----------------------hhhHHHhhcCccc---ccccCcCccHHHHH
Q psy5297 62 ------L-AQIGCFVPCDSA--T---IS----------------------VVDQIFTRVGAAD---SQYRGISTFMMEMK 104 (185)
Q Consensus 62 ------~-~~~g~~v~~~~~--~---~~----------------------~~~~~l~~~~l~~---~~~~~~~~lS~g~~ 104 (185)
+ ..++ |+||++. . ++ .+.++++.+++.+ ..++++.+|||||+
T Consensus 89 ~~~~~~r~~~i~-~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 89 KELNKLRAEQIS-MIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHhcCCEE-EEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 1 1345 9999862 1 11 1234556677753 34678999999999
Q ss_pred HHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEecc
Q psy5297 105 ETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYH 182 (185)
Q Consensus 105 q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~ 182 (185)
||++||+++ .+|+++|+||||+++|......+...+ ..++++.+.|+|++||| ..+.++||++++|++|++++.+++
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL-~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLL-NELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999 999999999997666665555555543 66665468999999999 667789999999999999999876
Q ss_pred CC
Q psy5297 183 TN 184 (185)
Q Consensus 183 ~~ 184 (185)
++
T Consensus 247 ~~ 248 (330)
T PRK09473 247 RD 248 (330)
T ss_pred HH
Confidence 54
No 129
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=272.55 Aligned_cols=173 Identities=17% Similarity=0.175 Sum_probs=137.0
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------- 61 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------- 61 (185)
+.++++++...| +++.+++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 3 ~~i~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 77 (501)
T PRK10762 3 ALLQLKGIDKAF-----PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQ 77 (501)
T ss_pred ceEEEeeeEEEe-----CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 456777776544 235799999999999999999999999999999999 44322
Q ss_pred HHhhCceecCCCCC---cc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC
Q psy5297 62 LAQIGCFVPCDSAT---IS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC 113 (185)
Q Consensus 62 ~~~~g~~v~~~~~~---~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l 113 (185)
...++ |+||++.. ++ .+.++++.+++.+..++++++||+|||||++||+++
T Consensus 78 ~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 156 (501)
T PRK10762 78 EAGIG-IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVL 156 (501)
T ss_pred hCCEE-EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 12245 88886411 11 123456778888888999999999999999999999
Q ss_pred -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|+++||||||+|+|+.....+.+. +..+++ .+.|||++||+ .++..+||++++|++|+++..+++++
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~-~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 157 SFESKVIIMDEPTDALTDTETESLFRV-IRELKS-QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred hcCCCEEEEeCCcCCCCHHHHHHHHHH-HHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCc
Confidence 99999999999777666655555554 466665 58999999999 88889999999999999998887664
No 130
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=9.8e-38 Score=245.65 Aligned_cols=151 Identities=25% Similarity=0.290 Sum_probs=120.9
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------HHhhCceecCCCCC-----cch---
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------LAQIGCFVPCDSAT-----ISV--- 78 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------~~~~g~~v~~~~~~-----~~~--- 78 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.+.+ ...++ |+||++.. .++
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~-~v~q~~~~~~~~~~tv~e~ 90 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIG-YVPQRRSIDRDFPISVRDV 90 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheE-EeccccccccCCCCcHHHH
Confidence 5699999999999999999999999999999999 43322 23455 88887521 121
Q ss_pred ----------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhH
Q psy5297 79 ----------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFG 135 (185)
Q Consensus 79 ----------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~ 135 (185)
+.++++.+++.+..++++.+||+|||||++||+++ .+|+++||||||+|+|+.....
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 170 (213)
T cd03235 91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED 170 (213)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 22355667777778899999999999999999999 9999999999977777666555
Q ss_pred HHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297 136 MACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE 176 (185)
Q Consensus 136 ~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i 176 (185)
+.+.+ ..+++ .+.|+|++||+ .++.++||++++|++|.+
T Consensus 171 l~~~l-~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 171 IYELL-RELRR-EGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred HHHHH-HHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 55544 56655 58999999999 778889999999988643
No 131
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-37 Score=252.18 Aligned_cols=176 Identities=13% Similarity=0.075 Sum_probs=133.3
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------------
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------- 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------- 61 (185)
+++++++..|-......+.+++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 667777654421100114699999999999999999999999999999999 33211
Q ss_pred -HHhhCceecCCC--CC--cch---------------------hhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-
Q psy5297 62 -LAQIGCFVPCDS--AT--ISV---------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 62 -~~~~g~~v~~~~--~~--~~~---------------------~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
...++ |+||++ .. .++ ++++++.+++. ...++++.+||+|||||++||+++
T Consensus 83 ~~~~i~-~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 83 IRKKVG-LVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHhheE-EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 22345 999874 11 121 23445667886 457889999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|+++||||||+|+|+.....+.+.+ ..+++ .+.|||++||+ .++..+||++++|++|++...+++++
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLF-KKLHQ-SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHH-CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999997777666555555544 56655 48999999999 77888999999999999988876543
No 132
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.2e-37 Score=238.20 Aligned_cols=145 Identities=17% Similarity=0.208 Sum_probs=119.3
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-------------HhhCceecCCCCCcchhhH
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL-------------AQIGCFVPCDSATISVVDQ 81 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~-------------~~~g~~v~~~~~~~~~~~~ 81 (185)
+.+++++||++++|++++|+||||||||||+|+| |.|.+. ..++ |+||
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~-~~~q---------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIA-YVPQ---------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHh-HHHH----------
Confidence 5799999999999999999999999999999999 222211 1122 3333
Q ss_pred HHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-h
Q psy5297 82 IFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-H 159 (185)
Q Consensus 82 ~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~ 159 (185)
+++.+++.+..++.+.+||+||+||+++||++ .+|+++||||||+|+|+.....+.+.+ +.++++.+.|+|++||+ .
T Consensus 81 ~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l-~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 81 ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELL-RRLARERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHH
Confidence 77888998888999999999999999999999 999999999997777776655555544 66655237899999999 7
Q ss_pred HHHHhhccccceeeeeEEEE
Q psy5297 160 EIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 160 ~~~~~~d~~~~l~~g~i~~~ 179 (185)
++.++||+++++++|++...
T Consensus 160 ~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 160 LAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred HHHHhCCEEEEEECCEEEec
Confidence 77899999999999998754
No 133
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.3e-37 Score=247.87 Aligned_cols=169 Identities=15% Similarity=0.169 Sum_probs=130.1
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH------------------------
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV------------------------ 60 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~------------------------ 60 (185)
+++++++..| +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 2 IEIENLNLFY-----GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred EEEEEEEEEE-----CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 4555655433 235699999999999999999999999999999999 3221
Q ss_pred ---HHHhhCceecCCCCC--cch----------------------hhHHHhhcCcc----cccccCcCccHHHHHHHHHH
Q psy5297 61 ---FLAQIGCFVPCDSAT--ISV----------------------VDQIFTRVGAA----DSQYRGISTFMMEMKETATV 109 (185)
Q Consensus 61 ---~~~~~g~~v~~~~~~--~~~----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~i 109 (185)
+...++ |+||++.. .++ +..+++.+++. +..++++.+||+|||||++|
T Consensus 77 ~~~~~~~i~-~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 155 (247)
T TIGR00972 77 VVELRRRVG-MVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCI 155 (247)
T ss_pred hHHHHhheE-EEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHH
Confidence 012344 88887522 121 22345666776 66788999999999999999
Q ss_pred HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
|+++ .+|+++||||||+|+|+.....+.+.+ ..+++ +.|+|++||+ .++..+||++++|++|+++..++++
T Consensus 156 aral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 228 (247)
T TIGR00972 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELI-QELKK--KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTE 228 (247)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999 999999999997777666655555543 56654 4899999999 7788999999999999999887654
No 134
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=255.12 Aligned_cols=178 Identities=13% Similarity=0.094 Sum_probs=134.1
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------- 61 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------- 61 (185)
+.++++|+...|-........+++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 34667777654411000013599999999999999999999999999999999 43321
Q ss_pred ----HHhhCceecCCCC--Cc--ch---------------------hhHHHhhcCcc-cccccCcCccHHHHHHHHHHHH
Q psy5297 62 ----LAQIGCFVPCDSA--TI--SV---------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIK 111 (185)
Q Consensus 62 ----~~~~g~~v~~~~~--~~--~~---------------------~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~ 111 (185)
...++ |+||++. .+ ++ +..+++.+++. +..++++++||+||+||++||+
T Consensus 85 ~~~~~~~i~-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 85 VKRLRKEIG-LVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred HHHHhccEE-EEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 12345 8998751 11 11 23456677884 5778999999999999999999
Q ss_pred hC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 112 KC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 112 ~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
++ .+|+++|||||++|+|+.....+.+.+ ..+.++.+.|||++||+ .++.++||++++|++|+++..++++
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLF-ERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99 999999999997777776655555544 55554358999999999 7788999999999999998887654
No 135
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-37 Score=247.99 Aligned_cols=174 Identities=16% Similarity=0.127 Sum_probs=132.9
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-------------------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV------------------- 60 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~------------------- 60 (185)
|+.+.++++++...|- .+.+++|+||++++|++++|+||||||||||+++| |...
T Consensus 1 ~~~~~l~~~~l~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~ 75 (252)
T PRK14239 1 MTEPILQVSDLSVYYN-----KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIY 75 (252)
T ss_pred CCCceEEEEeeEEEEC-----CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECc
Confidence 6667788888876552 25799999999999999999999999999999999 3210
Q ss_pred --------HHHhhCceecCCCCC--cchhhH----------------------HHhhcCcc----cccccCcCccHHHHH
Q psy5297 61 --------FLAQIGCFVPCDSAT--ISVVDQ----------------------IFTRVGAA----DSQYRGISTFMMEMK 104 (185)
Q Consensus 61 --------~~~~~g~~v~~~~~~--~~~~~~----------------------~l~~~~l~----~~~~~~~~~lS~g~~ 104 (185)
+...++ |+||++.. .++.++ +++.+++. +..++.+.+||+|||
T Consensus 76 ~~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 76 SPRTDTVDLRKEIG-MVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred CcccchHhhhhcEE-EEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHH
Confidence 112344 88988632 232222 23334432 235778899999999
Q ss_pred HHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEecc
Q psy5297 105 ETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYH 182 (185)
Q Consensus 105 q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~ 182 (185)
||++||+++ .+|+++|||||++|+|+.....+.+.+ +.+.+ +.|||++||+ .++.++||++++|++|++...+++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETL-LGLKD--DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDT 231 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH-HHHhh--CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999 999999999997777666655555544 55543 5899999999 778899999999999999988765
Q ss_pred C
Q psy5297 183 T 183 (185)
Q Consensus 183 ~ 183 (185)
+
T Consensus 232 ~ 232 (252)
T PRK14239 232 K 232 (252)
T ss_pred H
Confidence 4
No 136
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=8e-38 Score=249.28 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=123.3
Q ss_pred eceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH--------hhCceecCCCCC---cch--------
Q psy5297 26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA--------QIGCFVPCDSAT---ISV-------- 78 (185)
Q Consensus 26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~--------~~g~~v~~~~~~---~~~-------- 78 (185)
++|+||++++|++++|+||||||||||+|+| |.|.+.. ..+ |+||++.. .++
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~-~v~q~~~l~~~~tv~e~l~~~~ 79 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM-VVFQNYSLLPWLTVRENIALAV 79 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhe-EEecCcccCCCCCHHHHHHHHH
Confidence 5799999999999999999999999999999 4443321 124 88887521 121
Q ss_pred ---------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHH
Q psy5297 79 ---------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAR 142 (185)
Q Consensus 79 ---------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~ 142 (185)
+.++++.+++.+..++++++||+|||||++||+++ .+|+++|||||++|+|+.....+.+.+ .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l-~ 158 (230)
T TIGR01184 80 DRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL-M 158 (230)
T ss_pred HhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH-H
Confidence 23446667887778899999999999999999999 999999999997777766655555544 5
Q ss_pred HHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEecc
Q psy5297 143 ELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYH 182 (185)
Q Consensus 143 ~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~ 182 (185)
.+.++.+.|||++||+ .++.++||++++|++|+++..++.
T Consensus 159 ~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~ 199 (230)
T TIGR01184 159 QIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQI 199 (230)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCc
Confidence 5554358999999999 778899999999999999877654
No 137
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=9.8e-38 Score=253.87 Aligned_cols=178 Identities=13% Similarity=0.063 Sum_probs=134.6
Q ss_pred ceEEEcccCCceeeecC----CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------
Q psy5297 4 GTLVLNQCRHPIVELQG----GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------- 61 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~----~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------- 61 (185)
+.++++++...|-.... +.+.+++|+||++++|++++|+||||||||||||+| |.|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 45777887765521100 124699999999999999999999999999999999 43322
Q ss_pred ---HHhhCceecCCCC--Cc---c----------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHH
Q psy5297 62 ---LAQIGCFVPCDSA--TI---S----------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVI 110 (185)
Q Consensus 62 ---~~~~g~~v~~~~~--~~---~----------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia 110 (185)
...++ |+||++. .. + .+.++++.+++. +..++.+++||+||+||++||
T Consensus 83 ~~~~~~i~-~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 83 SYRSQRIR-MIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhHhccEE-EEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 12345 8888752 00 1 123456778884 567888899999999999999
Q ss_pred HhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 111 KKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 111 ~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+++ .+|+++||||||+|+|+.....+.+.+ ..+.++.|.|||++||+ .++..+||++++|++|+++..++++
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 235 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLM-LELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTA 235 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHH
Confidence 999 999999999997776665544444444 55554348999999999 7788899999999999998877654
No 138
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-37 Score=244.87 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=121.9
Q ss_pred ceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhCceecCCCCCc---c-------
Q psy5297 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIGCFVPCDSATI---S------- 77 (185)
Q Consensus 27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g~~v~~~~~~~---~------- 77 (185)
.|+||++++|++++|+||||||||||+|+| |.+.+ ...++ |+||++..+ +
T Consensus 15 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVS-MLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEE-EEecccccCCCCcHHHHHhc
Confidence 399999999999999999999999999999 44432 12345 888875221 1
Q ss_pred --------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHH
Q psy5297 78 --------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAR 142 (185)
Q Consensus 78 --------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~ 142 (185)
.+.++++.+++.+..++++.+||+|||||++||+++ .+|+++|||||++|+|+.....+.+.+ .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l-~ 172 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV-L 172 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-H
Confidence 123456677887778899999999999999999999 999999999997777776666665544 5
Q ss_pred HHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297 143 ELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 143 ~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~ 179 (185)
.++++.+.|+|++||+ .++.++||++++|++|+++..
T Consensus 173 ~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 173 DLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred HHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence 5554358999999999 778899999999999998754
No 139
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.5e-37 Score=252.52 Aligned_cols=177 Identities=15% Similarity=0.108 Sum_probs=134.7
Q ss_pred EEEcccCCceeeec----CCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------
Q psy5297 6 LVLNQCRHPIVELQ----GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------ 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~----~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------ 61 (185)
+++++++..|-... .+.+.+++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 56666655442100 0136799999999999999999999999999999999 33311
Q ss_pred ----HHhhCceecCCCC--C---cc----------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHH
Q psy5297 62 ----LAQIGCFVPCDSA--T---IS----------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATV 109 (185)
Q Consensus 62 ----~~~~g~~v~~~~~--~---~~----------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~i 109 (185)
...++ |+||++. . .+ .+.++++.+++. +..++++.+||+||+||++|
T Consensus 83 ~~~~~~~i~-~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 83 RRAFRRDVQ-LVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHhhceE-EEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 22355 8998741 1 11 123456777885 56788999999999999999
Q ss_pred HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++ .+|+++||||||+|+|+.....+.+.+ +.+.++.+.|||++||+ ..+..+||++++|++|+++..+++++
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l-~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELL-RKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQ 237 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHH
Confidence 9999 999999999997777666555555544 55554358999999999 77778999999999999998887654
No 140
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-37 Score=248.65 Aligned_cols=172 Identities=16% Similarity=0.141 Sum_probs=130.8
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------- 60 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------- 60 (185)
+.++++++...| +++.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 6 ~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (254)
T PRK14273 6 AIIETENLNLFY-----TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN 80 (254)
T ss_pred ceEEEeeeEEEe-----CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc
Confidence 457777776554 225699999999999999999999999999999999 3221
Q ss_pred -----HHHhhCceecCCCCC--cchhh----------------------HHHhhcCc----ccccccCcCccHHHHHHHH
Q psy5297 61 -----FLAQIGCFVPCDSAT--ISVVD----------------------QIFTRVGA----ADSQYRGISTFMMEMKETA 107 (185)
Q Consensus 61 -----~~~~~g~~v~~~~~~--~~~~~----------------------~~l~~~~l----~~~~~~~~~~lS~g~~q~~ 107 (185)
+...++ |+||++.. .++.+ ++++.+++ .+..++++++||+|||||+
T Consensus 81 ~~~~~~~~~i~-~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv 159 (254)
T PRK14273 81 FDILELRRKIG-MVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRL 159 (254)
T ss_pred ccHHHHhhceE-EEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHH
Confidence 112344 88887632 22222 22334444 2346788999999999999
Q ss_pred HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|||++ .+|+++||||||+|+|+.....+.+.+ ..+++ +.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~--~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 160 CIARTLAIEPNVILMDEPTSALDPISTGKIEELI-INLKE--SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHH-HHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999 999999999997777766655555544 55643 6899999999 77789999999999999998887543
No 141
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=252.97 Aligned_cols=176 Identities=17% Similarity=0.173 Sum_probs=136.4
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------H-
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------L- 62 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------~- 62 (185)
|.+..++++++...|- +++.+++|+||++++|++++|+||||||||||+|+| |.|.+ .
T Consensus 2 ~~~~~l~~~~l~~~~~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 77 (272)
T PRK15056 2 MQQAGIVVNDVTVTWR----NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQK 77 (272)
T ss_pred chhceEEEEeEEEEec----CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhcc
Confidence 4455677777765442 135799999999999999999999999999999999 33322 1
Q ss_pred HhhCceecCCCCC---c--c-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297 63 AQIGCFVPCDSAT---I--S-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK 112 (185)
Q Consensus 63 ~~~g~~v~~~~~~---~--~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~ 112 (185)
..++ |+||++.. + . .+.++++.+++.+..++++.+||+||+||++||++
T Consensus 78 ~~i~-~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~lara 156 (272)
T PRK15056 78 NLVA-YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARA 156 (272)
T ss_pred ceEE-EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 1245 88886411 0 0 12345677888888899999999999999999999
Q ss_pred C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+ .+|+++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++.++||+++++ +|++...+++++
T Consensus 157 L~~~p~llllDEPt~~LD~~~~~~l~~~L-~~~~~-~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 157 IAQQGQVILLDEPFTGVDVKTEARIISLL-RELRD-EGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHh
Confidence 9 999999999997777776655555544 66665 58999999999 7888999999777 899988887654
No 142
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.4e-37 Score=244.92 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=124.2
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhCceecCCCCCc---c-----
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIGCFVPCDSATI---S----- 77 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g~~v~~~~~~~---~----- 77 (185)
++.|+||++++|++++|+||||||||||+|+| |.|.+ ...++ |+||++..+ +
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~-~v~q~~~~~~~~t~~en~ 91 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVS-MLFQENNLFAHLTVRQNI 91 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceE-EEeccCccCCCCcHHHHH
Confidence 46799999999999999999999999999999 43322 12344 888876221 1
Q ss_pred ----------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH
Q psy5297 78 ----------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI 140 (185)
Q Consensus 78 ----------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i 140 (185)
.+.++++.+++.+..++.+.+||+||+||++||+++ .+|+++|||||++|+|......+.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 171 (213)
T TIGR01277 92 GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALV 171 (213)
T ss_pred HhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 123456777888788999999999999999999999 999999999997776666655555544
Q ss_pred HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297 141 ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY 181 (185)
Q Consensus 141 l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~ 181 (185)
+.+.++.+.|+|++||+ .++.++||++++|++|++...++
T Consensus 172 -~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 172 -KQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred -HHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 55554348999999999 77788999999999999988765
No 143
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=252.93 Aligned_cols=174 Identities=16% Similarity=0.151 Sum_probs=133.4
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HH
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FL 62 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~ 62 (185)
+.++++++...|- ++.+.+++|+||++++|++++|+||||||||||+|+| |.|. +.
T Consensus 6 ~~l~~~nl~~~~~---~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 82 (271)
T PRK13632 6 VMIKVENVSFSYP---NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIR 82 (271)
T ss_pred eEEEEEeEEEEcC---CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHh
Confidence 3466666655441 1235799999999999999999999999999999999 4332 12
Q ss_pred HhhCceecCCCC----Ccch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 63 AQIGCFVPCDSA----TISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 63 ~~~g~~v~~~~~----~~~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
..++ |+||++. ..++ +.++++.+++.+..++.+.+||+||+||++||+++ .+|
T Consensus 83 ~~i~-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 83 KKIG-IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred cceE-EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 3355 9998751 1121 23456777888888999999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+++||||||+|+|+.....+.+.+ ..++++.+.|+|++||+ .++ ..||++++|++|++...++.+
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l-~~~~~~~~~tiii~sH~~~~~-~~~d~v~~l~~G~i~~~g~~~ 227 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIM-VDLRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPK 227 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCcEEEEEEechhHH-hhCCEEEEEECCEEEEecCHH
Confidence 999999997777666555555544 55554235899999999 555 589999999999998877654
No 144
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-37 Score=248.26 Aligned_cols=159 Identities=18% Similarity=0.125 Sum_probs=129.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhCceecCCCCCc---c---
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIGCFVPCDSATI---S--- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g~~v~~~~~~~---~--- 77 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.+.+ ...++ |+||++..+ +
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~t~~~ 91 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN-TVFQNYALFPHLTVFE 91 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceE-EEecccccCCCCcHHH
Confidence 5799999999999999999999999999999999 43322 12344 888876322 2
Q ss_pred ------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297 78 ------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMAC 138 (185)
Q Consensus 78 ------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~ 138 (185)
.+..+++.+++.+..++.+.+||+||+||++||+++ .+|+++|||||++|+|+.....+.+
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~ 171 (232)
T cd03300 92 NIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQL 171 (232)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 123456778888888999999999999999999999 9999999999977777766665555
Q ss_pred HHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 139 SIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 139 ~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
.+ ..++++.+.|||++||+ .++.++||+++++++|++...++.+
T Consensus 172 ~l-~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~ 216 (232)
T cd03300 172 EL-KRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPE 216 (232)
T ss_pred HH-HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHH
Confidence 44 56655348999999999 7788999999999999998877643
No 145
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-37 Score=250.24 Aligned_cols=171 Identities=15% Similarity=0.111 Sum_probs=132.4
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------HHH
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV--------------FLA 63 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~--------------~~~ 63 (185)
++++++...|- +.+.+++|+||++++|++++|+||||||||||+|+| |.|. +..
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (274)
T PRK13644 2 IRLENVSYSYP----DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77 (274)
T ss_pred EEEEEEEEEcC----CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHh
Confidence 45555554331 124599999999999999999999999999999999 4321 123
Q ss_pred hhCceecCCCC--C--cc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297 64 QIGCFVPCDSA--T--IS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS 117 (185)
Q Consensus 64 ~~g~~v~~~~~--~--~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ 117 (185)
.++ |+||++. . .+ .+.++++.+++.+..++++.+||+||+||++||+++ .+|+
T Consensus 78 ~i~-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (274)
T PRK13644 78 LVG-IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPE 156 (274)
T ss_pred heE-EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 355 8888752 1 12 133456778888888999999999999999999999 9999
Q ss_pred EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
++||||||+|+|+.....+.+. +..+++ .|.|||++||+ .++ ..||++++|++|+++..+++++
T Consensus 157 lllLDEPt~gLD~~~~~~l~~~-l~~l~~-~g~til~~tH~~~~~-~~~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 157 CLIFDEVTSMLDPDSGIAVLER-IKKLHE-KGKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred EEEEeCCcccCCHHHHHHHHHH-HHHHHh-CCCEEEEEecCHHHH-hhCCEEEEEECCEEEEECCHHH
Confidence 9999999777766655555454 366665 58999999999 555 6799999999999998887543
No 146
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-37 Score=245.56 Aligned_cols=171 Identities=16% Similarity=0.136 Sum_probs=130.4
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH----H--------------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS----V-------------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i----~-------------------- 60 (185)
.++++++...| +.+.+++|+||++++|++++|+||||||||||+|+|... .
T Consensus 3 ~l~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14245 3 KIDARDVNFWY-----GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77 (250)
T ss_pred EEEEEEEEEEE-----CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc
Confidence 45666666544 235699999999999999999999999999999999321 0
Q ss_pred ----HHHhhCceecCCCCCc--ch----------------------hhHHHhhcCccc----ccccCcCccHHHHHHHHH
Q psy5297 61 ----FLAQIGCFVPCDSATI--SV----------------------VDQIFTRVGAAD----SQYRGISTFMMEMKETAT 108 (185)
Q Consensus 61 ----~~~~~g~~v~~~~~~~--~~----------------------~~~~l~~~~l~~----~~~~~~~~lS~g~~q~~~ 108 (185)
+...++ |+||++..+ ++ ++++++.+++.+ ..++++.+||+|||||++
T Consensus 78 ~~~~~~~~i~-~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 156 (250)
T PRK14245 78 QVDELRKNVG-MVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLC 156 (250)
T ss_pred cHHHHhhheE-EEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHH
Confidence 112345 888875221 11 223455566642 457888999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||+++ .+|+++||||||+|+|+.....+.+.+ ..+.+ +.|||++||+ .++.++||++++|++|+++..+++++
T Consensus 157 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 157 IARAMAVSPSVLLMDEPASALDPISTAKVEELI-HELKK--DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhc--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 99999 999999999997777766655555544 55543 6899999999 77889999999999999998887653
No 147
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-37 Score=246.85 Aligned_cols=171 Identities=12% Similarity=0.138 Sum_probs=131.4
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------- 60 (185)
.+++++++..+ +++.+++|+||++++|++++|+||||||||||+++| |...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSF-----GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEE-----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 46777776544 235799999999999999999999999999999999 4321
Q ss_pred --HHHhhCceecCCCCC---cchh-----------------------hHHHhhcCcc----cccccCcCccHHHHHHHHH
Q psy5297 61 --FLAQIGCFVPCDSAT---ISVV-----------------------DQIFTRVGAA----DSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 61 --~~~~~g~~v~~~~~~---~~~~-----------------------~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~ 108 (185)
+...++ |+||++.. .++. .++++.+++. +..++++.+||+||+||++
T Consensus 78 ~~~~~~i~-~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 156 (250)
T PRK14247 78 IELRRRVQ-MVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLC 156 (250)
T ss_pred HHHhccEE-EEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHH
Confidence 112344 88887632 2222 2234455653 2467889999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+++ .+|+++||||||+|+|+.....+.+.+ +.+++ +.|+|++||+ .++.++||++++|++|++...+++++
T Consensus 157 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l-~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 157 IARALAFQPEVLLADEPTANLDPENTAKIESLF-LELKK--DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc--CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 99999 999999999997777776666555544 55543 7899999999 77788999999999999998877543
No 148
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.7e-37 Score=250.22 Aligned_cols=173 Identities=17% Similarity=0.148 Sum_probs=133.2
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL------------- 62 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~------------- 62 (185)
+.+++++++..| +.+.+++|+||++++|++++|+||||||||||+|+| |.|.+.
T Consensus 2 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (253)
T TIGR02323 2 PLLQVSGLSKSY-----GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLS 76 (253)
T ss_pred ceEEEeeeEEEe-----CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCC
Confidence 456777776654 224689999999999999999999999999999999 322110
Q ss_pred ---------HhhCceecCCCC-----Ccc----------------------hhhHHHhhcCcc-cccccCcCccHHHHHH
Q psy5297 63 ---------AQIGCFVPCDSA-----TIS----------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKE 105 (185)
Q Consensus 63 ---------~~~g~~v~~~~~-----~~~----------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q 105 (185)
..++ |+||++. ..+ .+.++++.+++. ...++.+.+||+||+|
T Consensus 77 ~~~~~~~~~~~i~-~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~q 155 (253)
T TIGR02323 77 EAERRRLMRTEWG-FVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQ 155 (253)
T ss_pred HHHHHHhhhcceE-EEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHH
Confidence 1244 8888752 111 123446677776 4678899999999999
Q ss_pred HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
|++||+++ .+|+++|||||++|+|+.....+.+.+ ..+.++.+.|+|++||+ .++..+||++++|++|+++..++++
T Consensus 156 rv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l-~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~ 234 (253)
T TIGR02323 156 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL-RGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTD 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHH
Confidence 99999999 999999999997776666655555544 45544358999999999 7777899999999999999887654
No 149
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4.5e-37 Score=245.80 Aligned_cols=157 Identities=17% Similarity=0.214 Sum_probs=123.6
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHhhCceecC-CCC---Cc
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQIGCFVPC-DSA---TI 76 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~~g~~v~~-~~~---~~ 76 (185)
+.+.+++|+||++++|++++|+||||||||||+|+| |.|.+ ..+++ |+|+ .+. .+
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~~~~~~~~~~~~~ 110 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIG-VVFGQKTQLWWDL 110 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEE-EEcCCccccCCCC
Confidence 456799999999999999999999999999999999 33322 12345 7774 321 11
Q ss_pred ch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChh
Q psy5297 77 SV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGF 134 (185)
Q Consensus 77 ~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~ 134 (185)
++ +..+++.+++.+..++++.+||+||+||+.+|+++ .+|+++|||||++|+|+....
T Consensus 111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 190 (236)
T cd03267 111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190 (236)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 21 23456667887778899999999999999999999 999999999997776666655
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297 135 GMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 135 ~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~ 179 (185)
.+.+.+ ..++++.+.|||++||+ .++..+||++++|++|++++.
T Consensus 191 ~l~~~l-~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 235 (236)
T cd03267 191 NIRNFL-KEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYD 235 (236)
T ss_pred HHHHHH-HHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEec
Confidence 555544 56654358899999999 677899999999999999765
No 150
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=247.19 Aligned_cols=169 Identities=14% Similarity=0.093 Sum_probs=130.3
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhC
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIG 66 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g 66 (185)
++++++...|- .. ..|+||++++|++++|+||||||||||+|+| |.+.+ ...++
T Consensus 2 l~~~~l~~~~~-----~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYH-----HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVS 74 (232)
T ss_pred eEEEEEEEEEC-----Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEE
Confidence 45566655441 12 2389999999999999999999999999999 43322 12344
Q ss_pred ceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEE
Q psy5297 67 CFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVII 121 (185)
Q Consensus 67 ~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llll 121 (185)
|+||.+..+ + .+.++++.+++.+..++++.+||+||+||++||+++ .+|+++||
T Consensus 75 -~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 153 (232)
T PRK10771 75 -MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLL 153 (232)
T ss_pred -EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888875211 1 133456777888888999999999999999999999 99999999
Q ss_pred eCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 122 DEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
|||++|+|......+.+.+ ..+.++.+.|+|++||+ .++.++||++++|++|++...++++
T Consensus 154 DEP~~gLD~~~~~~~~~~l-~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 215 (232)
T PRK10771 154 DEPFSALDPALRQEMLTLV-SQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTD 215 (232)
T ss_pred eCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9997777666655555544 55544358999999999 7778899999999999999887754
No 151
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-37 Score=247.81 Aligned_cols=172 Identities=14% Similarity=0.121 Sum_probs=130.3
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV--------------------- 60 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~--------------------- 60 (185)
++.++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 11 ~~~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~ 85 (260)
T PRK10744 11 PSKIQVRNLNFYY-----GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP 85 (260)
T ss_pred CceEEEEEEEEEe-----CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccc
Confidence 4466777776554 225799999999999999999999999999999999 4321
Q ss_pred ------HHHhhCceecCCCCCc--ch----------------------hhHHHhhcCcc----cccccCcCccHHHHHHH
Q psy5297 61 ------FLAQIGCFVPCDSATI--SV----------------------VDQIFTRVGAA----DSQYRGISTFMMEMKET 106 (185)
Q Consensus 61 ------~~~~~g~~v~~~~~~~--~~----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~ 106 (185)
+..+++ |+||++..+ ++ +.++++.+++. +..++++.+||+||+||
T Consensus 86 ~~~~~~~~~~i~-~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 164 (260)
T PRK10744 86 KQDIALLRAKVG-MVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQR 164 (260)
T ss_pred ccchHHHhcceE-EEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHH
Confidence 012244 888875221 21 22344555552 34678889999999999
Q ss_pred HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
++||+++ .+|+++||||||+|+|+.....+.+.+ ..+++ +.|+|++||+ .++..+||++++|++|+++..++++
T Consensus 165 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L-~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 165 LCIARGIAIRPEVLLLDEPCSALDPISTGRIEELI-TELKQ--DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999 999999999997776665545444433 55543 6899999999 7778899999999999999887654
No 152
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=261.96 Aligned_cols=155 Identities=18% Similarity=0.168 Sum_probs=127.6
Q ss_pred eEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCcc-----
Q psy5297 28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATIS----- 77 (185)
Q Consensus 28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~~----- 77 (185)
|+||++++|++++|+||||||||||+|+| |.|.+ ...++ |+||+...++
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~-~v~q~~~l~~~~tv~ 94 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG-YVFQDARLFPHYKVR 94 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEE-EEcCCcccCCCCcHH
Confidence 89999999999999999999999999999 33321 22345 8999873332
Q ss_pred -------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHH
Q psy5297 78 -------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARE 143 (185)
Q Consensus 78 -------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~ 143 (185)
.++++++.+++.+..++++.+||+|||||++|||++ .+|+++|||||++|+|+.....+.+.+ +.
T Consensus 95 enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L-~~ 173 (352)
T PRK11144 95 GNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYL-ER 173 (352)
T ss_pred HHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH-HH
Confidence 244567888998889999999999999999999999 999999999997777666655555544 56
Q ss_pred HHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 144 LASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 144 l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+.++.+.|+|++||+ .++..+||++++|++|++...+++++
T Consensus 174 l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 215 (352)
T PRK11144 174 LAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE 215 (352)
T ss_pred HHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHH
Confidence 655358999999999 78889999999999999999887654
No 153
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.6e-37 Score=272.06 Aligned_cols=178 Identities=14% Similarity=0.109 Sum_probs=134.8
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL-------------- 62 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~-------------- 62 (185)
.++++++...|-...++.+.+++|+||++++|++++|+||||||||||+|+| |.|.+.
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4556665543311011224699999999999999999999999999999999 444331
Q ss_pred ------HhhCceecCCCCCc---ch--------------------hhHHHhhcCccc-----ccccCcCccHHHHHHHHH
Q psy5297 63 ------AQIGCFVPCDSATI---SV--------------------VDQIFTRVGAAD-----SQYRGISTFMMEMKETAT 108 (185)
Q Consensus 63 ------~~~g~~v~~~~~~~---~~--------------------~~~~l~~~~l~~-----~~~~~~~~lS~g~~q~~~ 108 (185)
..++ |+||++..+ ++ +.++++.+++.+ ..++++.+||+|||||++
T Consensus 359 ~~~~~~~~i~-~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~ 437 (520)
T TIGR03269 359 GRGRAKRYIG-ILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVA 437 (520)
T ss_pred hHHHHhhhEE-EEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHH
Confidence 1245 999975221 11 223566778764 468999999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||+++ .+|+++||||||+|+|+.....+.+.+ ..++++.|.|||++||+ .++.++||++++|++|+++..+++++
T Consensus 438 laral~~~p~lLllDEPt~~LD~~~~~~l~~~l-~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 514 (520)
T TIGR03269 438 LAQVLIKEPRIVILDEPTGTMDPITKVDVTHSI-LKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEE 514 (520)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999 999999999997776666655555544 56654358999999999 78889999999999999998876643
No 154
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.1e-37 Score=248.00 Aligned_cols=158 Identities=20% Similarity=0.207 Sum_probs=122.8
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH---------HHH------------HHh--hCceecCCCCCcc-
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV---------SVF------------LAQ--IGCFVPCDSATIS- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~---------i~~------------~~~--~g~~v~~~~~~~~- 77 (185)
+.+++|+||++++|++++|+||||||||||+|+| |. |.+ ... ++ |+||++..++
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~ 91 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF-LAFQYPEEIPG 91 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE-eeeccccccCC
Confidence 5799999999999999999999999999999999 33 111 011 33 8888763211
Q ss_pred ------------------------------hhhHHHhhcCcc-cccccCcC-ccHHHHHHHHHHHHhC-CCCeEEEEeCC
Q psy5297 78 ------------------------------VVDQIFTRVGAA-DSQYRGIS-TFMMEMKETATVIKKC-TENSLVIIDEL 124 (185)
Q Consensus 78 ------------------------------~~~~~l~~~~l~-~~~~~~~~-~lS~g~~q~~~ia~~l-~~p~llllDEP 124 (185)
.+.++++.+++. +..++++. +||+|||||++||+++ .+|+++|||||
T Consensus 92 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 171 (243)
T TIGR01978 92 VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEI 171 (243)
T ss_pred cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 122345556775 35677776 5999999999999999 99999999999
Q ss_pred CCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHh-hccccceeeeeEEEEeccC
Q psy5297 125 GRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALL-SRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 125 ~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~-~d~~~~l~~g~i~~~~~~~ 183 (185)
|+|+|+.....+.+.+ ..+++ .+.|||++||+ .++..+ ||++++|++|++...++++
T Consensus 172 t~~LD~~~~~~l~~~l-~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 172 DSGLDIDALKIVAEGI-NRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred cccCCHHHHHHHHHHH-HHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 7777766655555544 56655 58999999999 777777 8999999999999887764
No 155
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-37 Score=248.25 Aligned_cols=170 Identities=18% Similarity=0.199 Sum_probs=127.9
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------- 60 (185)
.+++++++..| +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 21 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 21 ILEVKDLSIYY-----GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred eEEEEEEEEEe-----CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 45555554433 235799999999999999999999999999999999 4321
Q ss_pred ----HHHhhCceecCCCCCc--chhh----------------------HHHhhcCcc----cccccCcCccHHHHHHHHH
Q psy5297 61 ----FLAQIGCFVPCDSATI--SVVD----------------------QIFTRVGAA----DSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 61 ----~~~~~g~~v~~~~~~~--~~~~----------------------~~l~~~~l~----~~~~~~~~~lS~g~~q~~~ 108 (185)
+...++ |+||++..+ ++.+ ++++.+++. +..++++.+||+||+||++
T Consensus 96 ~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 96 NVVNLRREIG-MVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred cHHHHhccEE-EEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 111244 888876322 2211 223334442 3457889999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
||+++ .+|+++||||||+|+|+.....+.+.+ ..+++ +.|||++||+ .++.++||++++|++|+++..++++
T Consensus 175 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 175 IARTLAMKPAVLLLDEPASALDPISNAKIEELI-TELKE--EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHH-HHHhc--CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999 999999999997777776666555544 55554 5899999999 7788999999999999999887654
No 156
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-37 Score=245.93 Aligned_cols=170 Identities=14% Similarity=0.092 Sum_probs=129.7
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------- 60 (185)
.++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 4 AIETVNLRVYY-----GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred eEEEEeEEEEe-----CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 57777776544 235799999999999999999999999999999999 4321
Q ss_pred ----HHHhhCceecCCCCCc---chh-----------------------hHHHhhcCcc----cccccCcCccHHHHHHH
Q psy5297 61 ----FLAQIGCFVPCDSATI---SVV-----------------------DQIFTRVGAA----DSQYRGISTFMMEMKET 106 (185)
Q Consensus 61 ----~~~~~g~~v~~~~~~~---~~~-----------------------~~~l~~~~l~----~~~~~~~~~lS~g~~q~ 106 (185)
+..+++ |+||++..+ ++. .++++.+++. +..++++.+||+|||||
T Consensus 79 ~~~~~~~~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14267 79 DPIEVRREVG-MVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQR 157 (253)
T ss_pred ChHHHhhcee-EEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHH
Confidence 112344 888876222 221 2234445553 34677899999999999
Q ss_pred HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
++||+++ .+|+++|||||++|+|+.....+.+.+ +.+++ +.|+|++||+ .++..+||++++|++|+++..++++
T Consensus 158 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 158 LVIARALAMKPKILLMDEPTANIDPVGTAKIEELL-FELKK--EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhh--CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 9999999 999999999997777665555554444 55543 5899999999 7778899999999999999887654
No 157
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=246.62 Aligned_cols=172 Identities=16% Similarity=0.137 Sum_probs=130.5
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV--------------------- 60 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~--------------------- 60 (185)
.+.++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 17 ~~~l~~~nl~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~ 91 (267)
T PRK14235 17 EIKMRARDVSVFY-----GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDP 91 (267)
T ss_pred CceEEEEeEEEEE-----CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccc
Confidence 3456667766544 235799999999999999999999999999999999 4331
Q ss_pred ------HHHhhCceecCCCCCc--ch-----------------------hhHHHhhcCccc----ccccCcCccHHHHHH
Q psy5297 61 ------FLAQIGCFVPCDSATI--SV-----------------------VDQIFTRVGAAD----SQYRGISTFMMEMKE 105 (185)
Q Consensus 61 ------~~~~~g~~v~~~~~~~--~~-----------------------~~~~l~~~~l~~----~~~~~~~~lS~g~~q 105 (185)
+...++ |+||++..+ ++ +.++++.+++.+ ..++++.+||+||+|
T Consensus 92 ~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 170 (267)
T PRK14235 92 RLDVVELRARVG-MVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQ 170 (267)
T ss_pred ccchHHHhhceE-EEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 012234 888875222 21 123445556642 356788999999999
Q ss_pred HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
|++||+++ .+|+++||||||+|+|+.....+.+.+ +.+++ +.|||++||+ .++..+||++++|++|+++..++++
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L-~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELI-DELRQ--NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHH-HHHhc--CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999 999999999997776666555554443 55543 6899999999 7788999999999999999887654
No 158
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.6e-37 Score=269.37 Aligned_cols=171 Identities=13% Similarity=0.042 Sum_probs=136.7
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~ 63 (185)
.+++++++..| +.+.+++|+||++++|++++|+||||||||||+|+| |.|.+ ..
T Consensus 3 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~ 77 (490)
T PRK10938 3 SLQISQGTFRL-----SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQK 77 (490)
T ss_pred eEEEEeEEEEc-----CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHH
Confidence 46777776554 235699999999999999999999999999999999 33321 12
Q ss_pred hhCceecCCCC-----------Ccc-------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeE
Q psy5297 64 QIGCFVPCDSA-----------TIS-------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSL 118 (185)
Q Consensus 64 ~~g~~v~~~~~-----------~~~-------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~l 118 (185)
.++ |+||.+. .++ .+.++++.+++.+..++++++||+|||||++||+++ .+|++
T Consensus 78 ~i~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 156 (490)
T PRK10938 78 LVS-DEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDL 156 (490)
T ss_pred Hhc-eeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 345 8887642 112 234567888998888999999999999999999999 99999
Q ss_pred EEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 119 VIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 119 lllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++.++||++++|++|+++..++++
T Consensus 157 llLDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 220 (490)
T PRK10938 157 LILDEPFDGLDVASRQQLAELL-ASLHQ-SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGERE 220 (490)
T ss_pred EEEcCCcccCCHHHHHHHHHHH-HHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 9999997776666655555544 66665 48999999999 8888999999999999998887654
No 159
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=4.8e-37 Score=258.93 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=126.4
Q ss_pred eEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCc---ch-
Q psy5297 28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATI---SV- 78 (185)
Q Consensus 28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~---~~- 78 (185)
|+||++++|++++|+||||||||||||+| |.|.+ ...++ |+||++..+ ++
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~-~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG-YVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE-EEecCCccCCCCcHH
Confidence 99999999999999999999999999999 43321 12345 889876322 21
Q ss_pred ------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHH
Q psy5297 79 ------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACS 139 (185)
Q Consensus 79 ------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~ 139 (185)
++++++.+++.+..++++.+||+|||||++|||++ .+|+++||||||+|+|+.....+.+.
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 173 (354)
T TIGR02142 94 GNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPY 173 (354)
T ss_pred HHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 34567778888889999999999999999999999 99999999999777776665555554
Q ss_pred HHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 140 IARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 140 il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+ +.++++.+.|+|++||+ .++..+||++++|++|++...+++++
T Consensus 174 L-~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (354)
T TIGR02142 174 L-ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAE 218 (354)
T ss_pred H-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHH
Confidence 4 56655358999999999 77889999999999999998877643
No 160
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=3.2e-37 Score=245.67 Aligned_cols=158 Identities=14% Similarity=0.061 Sum_probs=124.1
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHHH----------------------HHhhCceecCCCC--C---c
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSVF----------------------LAQIGCFVPCDSA--T---I 76 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~~----------------------~~~~g~~v~~~~~--~---~ 76 (185)
+++|+||++++|++++|+||||||||||+|+| |.... ...++ |+||++. . +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIA-TIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeE-EEecCchhhcCccc
Confidence 47899999999999999999999999999999 33211 12344 8888752 1 1
Q ss_pred ch---------------------hhHHHhhcCcc---cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcC
Q psy5297 77 SV---------------------VDQIFTRVGAA---DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTF 131 (185)
Q Consensus 77 ~~---------------------~~~~l~~~~l~---~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~ 131 (185)
++ +.++++.+++. +..++++.+||+|||||++||+++ .+|+++||||||+|+|..
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 21 23455666776 457889999999999999999999 999999999997777665
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 132 DGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 132 d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
....+.+.+ ..++++.+.|||++||+ .++..+||++++|++|++...+++++
T Consensus 160 ~~~~l~~~l-~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 212 (230)
T TIGR02770 160 NQARVLKLL-RELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKE 212 (230)
T ss_pred HHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 555555544 55554348899999999 77888999999999999998876643
No 161
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-37 Score=251.28 Aligned_cols=177 Identities=15% Similarity=0.093 Sum_probs=138.3
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------------HHHHH-----------
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------------GVSVF----------- 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------------G~i~~----------- 61 (185)
++++|+.-.|... ++...+++||||++++||+++|+|.+||||||+.+.| |.|.+
T Consensus 2 L~v~nL~v~f~~~-~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTD-AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecC-CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 5677776544332 2335699999999999999999999999999999999 22211
Q ss_pred -----HHhhCceecCCCC-Ccc---------------------------hhhHHHhhcCccc---ccccCcCccHHHHHH
Q psy5297 62 -----LAQIGCFVPCDSA-TIS---------------------------VVDQIFTRVGAAD---SQYRGISTFMMEMKE 105 (185)
Q Consensus 62 -----~~~~g~~v~~~~~-~~~---------------------------~~~~~l~~~~l~~---~~~~~~~~lS~g~~q 105 (185)
+++-.+|+||++. .+. .+.++++.+++.+ .++.++.+|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 1222349999871 111 1345667778864 568999999999999
Q ss_pred HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
|+.||.++ .+|++||.||||+++|..-...+.++ ++.++++.|.++|++||| .-++++|||+.+|..|++++.|+.+
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~L-l~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~ 239 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDL-LKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVE 239 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHH
Confidence 99999999 99999999999666655555555453 477777689999999999 7788999999999999999999876
Q ss_pred C
Q psy5297 184 N 184 (185)
Q Consensus 184 ~ 184 (185)
+
T Consensus 240 ~ 240 (316)
T COG0444 240 E 240 (316)
T ss_pred H
Confidence 5
No 162
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-37 Score=276.80 Aligned_cols=178 Identities=11% Similarity=0.071 Sum_probs=136.8
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------- 61 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------- 61 (185)
++.+++++++..|-. .++...+++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 10 ~~~l~v~~l~~~y~~-~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 10 RDVLAVENLNIAFMQ-EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CceEEEeceEEEecC-CCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 346777777655421 11235799999999999999999999999999999999 33211
Q ss_pred -------------H-HhhCceecCCC-----CCcch----------------------hhHHHhhcCccc---ccccCcC
Q psy5297 62 -------------L-AQIGCFVPCDS-----ATISV----------------------VDQIFTRVGAAD---SQYRGIS 97 (185)
Q Consensus 62 -------------~-~~~g~~v~~~~-----~~~~~----------------------~~~~l~~~~l~~---~~~~~~~ 97 (185)
+ ..++ |+||++ ..+++ +.++++.+++.+ .+++++.
T Consensus 89 ~~~~~~~~~~~~~r~~~ig-~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMA-MIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred ccccCCHHHHHHHhCCCEE-EEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 1 1345 999975 11221 234566778853 4789999
Q ss_pred ccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297 98 TFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH 175 (185)
Q Consensus 98 ~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~ 175 (185)
+||+|||||++||+++ .+|++|||||||+++|+.....+.+. ++.++++.|.|||++||+ .++.++|||+++|++|+
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~l-l~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL-IKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 9999999999999999 99999999999777666665556554 467765458999999999 78889999999999999
Q ss_pred EEEEeccC
Q psy5297 176 ESKYLYHT 183 (185)
Q Consensus 176 i~~~~~~~ 183 (185)
++..++++
T Consensus 247 i~~~g~~~ 254 (623)
T PRK10261 247 AVETGSVE 254 (623)
T ss_pred ecccCCHH
Confidence 98877654
No 163
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-37 Score=275.95 Aligned_cols=160 Identities=17% Similarity=0.106 Sum_probs=128.9
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------------HHhhCceecCCCC--C-
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------------LAQIGCFVPCDSA--T- 75 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------------~~~~g~~v~~~~~--~- 75 (185)
..+++|+||++++|++++|+||||||||||+|+| |.|.+ ..+++ |+||++. .
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~-~v~Q~~~~~l~ 415 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQ-FIFQDPYASLD 415 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeE-EEecCchhhcC
Confidence 4699999999999999999999999999999999 33322 12355 9999851 1
Q ss_pred --cc----------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCC
Q psy5297 76 --IS----------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTS 129 (185)
Q Consensus 76 --~~----------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~ 129 (185)
++ .+.++++.+++. +..++++.+||+|||||++||+++ .+|++|||||||+++|
T Consensus 416 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD 495 (623)
T PRK10261 416 PRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495 (623)
T ss_pred CCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 11 123456778885 567899999999999999999999 9999999999977766
Q ss_pred cCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 130 TFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 130 ~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
......+.+.+ ..++++.|.|||++||| ..+..+||++++|++|++++.+++++
T Consensus 496 ~~~~~~i~~ll-~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~ 550 (623)
T PRK10261 496 VSIRGQIINLL-LDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRA 550 (623)
T ss_pred HHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 66655555544 66655458999999999 77889999999999999998887654
No 164
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=243.97 Aligned_cols=169 Identities=14% Similarity=0.142 Sum_probs=129.2
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH-----------------------HH
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS-----------------------VF 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i-----------------------~~ 61 (185)
+++++++..| +.+.+++|+||++++|++++|+||||||||||+|+| |.. .+
T Consensus 3 ~~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 3 AKTTNLNLFY-----GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred eeeeeeEEEE-----CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 4566665544 235799999999999999999999999999999999 321 11
Q ss_pred HHhhCceecCCCCCc--ch-----------------------hhHHHhhcCcc----cccccCcCccHHHHHHHHHHHHh
Q psy5297 62 LAQIGCFVPCDSATI--SV-----------------------VDQIFTRVGAA----DSQYRGISTFMMEMKETATVIKK 112 (185)
Q Consensus 62 ~~~~g~~v~~~~~~~--~~-----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~ia~~ 112 (185)
...++ |+||++..+ ++ +.++++.+++. +..++++.+||+||+||+++||+
T Consensus 78 ~~~i~-~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 156 (246)
T PRK14269 78 RKNVG-MVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARA 156 (246)
T ss_pred hhhEE-EEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHH
Confidence 23455 899886221 11 22445666774 34577889999999999999999
Q ss_pred C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+ .+|+++|||||++|+|+.....+.+.+ ..+.+ +.|+|++||+ .++..+||++++|++|+++..++++
T Consensus 157 l~~~p~lllLDEP~~~LD~~~~~~l~~~l-~~~~~--~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 226 (246)
T PRK14269 157 LAIKPKLLLLDEPTSALDPISSGVIEELL-KELSH--NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESK 226 (246)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHhC--CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHH
Confidence 9 999999999997776665544444433 45543 7899999999 7788999999999999999887654
No 165
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=244.73 Aligned_cols=171 Identities=16% Similarity=0.183 Sum_probs=129.8
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------- 60 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------- 60 (185)
+.+++++++..+ +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 3 ~~l~~~~l~~~~-----~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 3 NIISAKDVHLSY-----GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred ceEEEEeeEEEE-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 457787777654 225799999999999999999999999999999999 4321
Q ss_pred -----HHHhhCceecCCCCCc--ch----------------------hhHHHhhcCcc----cccccCcCccHHHHHHHH
Q psy5297 61 -----FLAQIGCFVPCDSATI--SV----------------------VDQIFTRVGAA----DSQYRGISTFMMEMKETA 107 (185)
Q Consensus 61 -----~~~~~g~~v~~~~~~~--~~----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~~ 107 (185)
+...++ |+||++..+ ++ +.++++.+++. +..++++.+||+||+||+
T Consensus 78 ~~~~~~~~~i~-~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 156 (251)
T PRK14251 78 MDLVELRKEVG-MVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRI 156 (251)
T ss_pred chHHHhhccEE-EEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHH
Confidence 011234 888875322 21 12334455653 345788899999999999
Q ss_pred HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+|||++ .+|+++|||||++|+|+.....+...+ +.+.+ +.|+|++||+ .++.++||++++|++|++...++++
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~--~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 231 (251)
T PRK14251 157 CIARALAVRPKVVLLDEPTSALDPISSSEIEETL-MELKH--QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTE 231 (251)
T ss_pred HHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHH-HHHHc--CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHH
Confidence 999999 999999999997776665544444433 55543 6899999999 7788999999999999999887654
No 166
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=9.9e-37 Score=268.37 Aligned_cols=159 Identities=13% Similarity=0.067 Sum_probs=126.9
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH---------HH-------------------------------
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS---------VF------------------------------- 61 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i---------~~------------------------------- 61 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.+ .+
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 92 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE 92 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence 5799999999999999999999999999999999 432 11
Q ss_pred ---------------HHhhCceecCC-CCC---cc---------------------hhhHHHhhcCcccccccCcCccHH
Q psy5297 62 ---------------LAQIGCFVPCD-SAT---IS---------------------VVDQIFTRVGAADSQYRGISTFMM 101 (185)
Q Consensus 62 ---------------~~~~g~~v~~~-~~~---~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~ 101 (185)
...++ |+||+ ... .+ .+.++++.+++++..++++++||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 171 (520)
T TIGR03269 93 EVDFWNLSDKLRRRIRKRIA-IMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSG 171 (520)
T ss_pred chhhhccCHHHHHHhhhcEE-EEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCH
Confidence 11234 88886 211 12 133467778888888999999999
Q ss_pred HHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297 102 EMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 102 g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~ 179 (185)
|||||++||+++ .+|+++||||||+++|+.....+.+.+ +.+.++.|.|||++||+ ..+.++||++++|++|+++..
T Consensus 172 Gq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~ 250 (520)
T TIGR03269 172 GEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNAL-EEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEE 250 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHH-HHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeee
Confidence 999999999999 999999999997776666555555534 66654358999999999 777889999999999999887
Q ss_pred eccC
Q psy5297 180 LYHT 183 (185)
Q Consensus 180 ~~~~ 183 (185)
++++
T Consensus 251 g~~~ 254 (520)
T TIGR03269 251 GTPD 254 (520)
T ss_pred cCHH
Confidence 7654
No 167
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=7.9e-37 Score=244.47 Aligned_cols=160 Identities=20% Similarity=0.164 Sum_probs=127.6
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhCceecCCCCCc---c---
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIGCFVPCDSATI---S--- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g~~v~~~~~~~---~--- 77 (185)
+.+++|+||++.+|++++|+||||||||||+++| |.+.+ ...++ |+||.+..+ +
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~-~~~q~~~~~~~~t~~e 91 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG-FVFQHYALFKHLTVRD 91 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEE-EEecChhhccCCcHHH
Confidence 5799999999999999999999999999999999 33322 12344 888876222 1
Q ss_pred ------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297 78 ------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMAC 138 (185)
Q Consensus 78 ------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~ 138 (185)
.+.++++.+++.+..++.+.+||+||+||+++|+++ .+|+++|||||++|+|......+.+
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~ 171 (237)
T TIGR00968 92 NIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRS 171 (237)
T ss_pred HHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 124556777887778899999999999999999999 9999999999966666655554544
Q ss_pred HHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 139 SIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 139 ~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+ ..++++.+.|+|++||+ .++.++||+++++++|+++..++.++
T Consensus 172 ~l-~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 217 (237)
T TIGR00968 172 WL-RKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDE 217 (237)
T ss_pred HH-HHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHH
Confidence 33 55554348999999999 77789999999999999998877543
No 168
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=8.9e-37 Score=246.47 Aligned_cols=172 Identities=12% Similarity=0.046 Sum_probs=132.9
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------H-----------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV-----------F----------- 61 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~-----------~----------- 61 (185)
.++++++...+ . +.+++|+||++++|++++|+||||||||||+|+| |... +
T Consensus 4 ~l~~~~l~~~~-~-----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A-----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe-c-----cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 47777777655 1 4699999999999999999999999999999999 3221 1
Q ss_pred HHhhCceecCCCC-Cc----c-------------------hhhHHHhhcCccc---ccccCcCccHHHHHHHHHHHHhC-
Q psy5297 62 LAQIGCFVPCDSA-TI----S-------------------VVDQIFTRVGAAD---SQYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 62 ~~~~g~~v~~~~~-~~----~-------------------~~~~~l~~~~l~~---~~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
...++ |+||++. .+ + .+.++++.+++.+ ..++++.+||+||+||++||+++
T Consensus 78 ~~~i~-~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~ 156 (254)
T PRK10418 78 GRKIA-TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALL 156 (254)
T ss_pred cceEE-EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHh
Confidence 12244 8898852 11 1 1233556677765 46888999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|+++|||||++|+|+.....+...+ +.+.++.|.|||++||+ .++.++||++++|++|++...+++++
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~L-~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 227 (254)
T PRK10418 157 CEAPFIIADEPTTDLDVVAQARILDLL-ESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVET 227 (254)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHH-HHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 999999999997777665555454544 55554358999999999 77788999999999999998877543
No 169
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-36 Score=248.09 Aligned_cols=175 Identities=21% Similarity=0.129 Sum_probs=135.7
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~ 63 (185)
.++++++...|-. .....+++|+||++++|++++|+||||||||||+++| |.|.+ ..
T Consensus 4 ~l~~~~l~~~~~~--~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 81 (277)
T PRK13642 4 ILEVENLVFKYEK--ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRR 81 (277)
T ss_pred eEEEEEEEEEcCC--CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhc
Confidence 5777887665421 1124599999999999999999999999999999999 33321 23
Q ss_pred hhCceecCCCC--C--cch---------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297 64 QIGCFVPCDSA--T--ISV---------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS 117 (185)
Q Consensus 64 ~~g~~v~~~~~--~--~~~---------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ 117 (185)
.++ |+||++. . .++ ++.+++.+++.+..++++.+||+||+||++||+++ .+|+
T Consensus 82 ~i~-~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ 160 (277)
T PRK13642 82 KIG-MVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPE 160 (277)
T ss_pred ceE-EEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 355 8898751 1 121 23455667887788899999999999999999999 9999
Q ss_pred EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
++|||||++|+|+.....+...+ ..+.++.|.|+|++||+ .++ ..||++++|++|+++..+++++
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l-~~l~~~~g~tiil~sH~~~~~-~~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 161 IIILDESTSMLDPTGRQEIMRVI-HEIKEKYQLTVLSITHDLDEA-ASSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEeCCHHH
Confidence 99999997777776666665544 56665358999999999 555 4699999999999998887654
No 170
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=243.94 Aligned_cols=172 Identities=19% Similarity=0.187 Sum_probs=130.8
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------- 60 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------- 60 (185)
..++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 3 ~~l~~~nl~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 77 (252)
T PRK14256 3 NKVKLEQLNVHF-----GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG 77 (252)
T ss_pred cEEEEEEEEEEe-----CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc
Confidence 347777776544 135799999999999999999999999999999999 4321
Q ss_pred -----HHHhhCceecCCCCCc---ch----------------------hhHHHhhcCcc----cccccCcCccHHHHHHH
Q psy5297 61 -----FLAQIGCFVPCDSATI---SV----------------------VDQIFTRVGAA----DSQYRGISTFMMEMKET 106 (185)
Q Consensus 61 -----~~~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~ 106 (185)
+...++ |+||++..+ ++ +.++++.+++. +..++.+.+||+||+||
T Consensus 78 ~~~~~~~~~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 78 VDPVSIRRRVG-MVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred CChHHhhccEE-EEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence 011234 888875222 21 12334455653 24567889999999999
Q ss_pred HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
++||+++ .+|+++|||||++|+|+.....+.+. ++.+.+ +.|||++||+ .++.++||++++|++|++...+++++
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~-l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEEL-IEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999 99999999999777766665555554 466654 5799999999 77889999999999999998887543
No 171
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=262.84 Aligned_cols=183 Identities=16% Similarity=0.124 Sum_probs=145.6
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH------------HHHHH-------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI------------GVSVF------- 61 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i------------G~i~~------- 61 (185)
|..+.++++|+...|-.. .+...+++||||++.+||++||+|.+||||||+.++| |.|.+
T Consensus 1 ~~~~lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~ 79 (539)
T COG1123 1 MMSPLLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG 79 (539)
T ss_pred CCCceEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhc
Confidence 456689999998777654 3335799999999999999999999999999999999 33311
Q ss_pred ---------HHhhCceecCCCC-Cc----c----------------------hhhHHHhhcCccccccc--CcCccHHHH
Q psy5297 62 ---------LAQIGCFVPCDSA-TI----S----------------------VVDQIFTRVGAADSQYR--GISTFMMEM 103 (185)
Q Consensus 62 ---------~~~~g~~v~~~~~-~~----~----------------------~~~~~l~~~~l~~~~~~--~~~~lS~g~ 103 (185)
++...+|+||+++ .+ + .+.++++.+++.+...+ ++.+|||||
T Consensus 80 l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~ 159 (539)
T COG1123 80 LSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGM 159 (539)
T ss_pred CCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchH
Confidence 1222349999972 11 1 24567788888776654 999999999
Q ss_pred HHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297 104 KETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY 181 (185)
Q Consensus 104 ~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~ 181 (185)
|||+.||+++ .+|++||+||||.++|......+.+. ++.+.++.|.++|++||| .-++++|||+++|++|++++.|+
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~l-lk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL-LKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHH-HHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 9999999999 99999999999666655555555554 477776689999999999 66788999999999999999998
Q ss_pred cCCC
Q psy5297 182 HTNV 185 (185)
Q Consensus 182 ~~~~ 185 (185)
++++
T Consensus 239 ~~~i 242 (539)
T COG1123 239 TEEI 242 (539)
T ss_pred HHHH
Confidence 7653
No 172
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.1e-36 Score=268.65 Aligned_cols=180 Identities=18% Similarity=0.100 Sum_probs=137.7
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH------------H------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV------------F------ 61 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~------------~------ 61 (185)
|+++.++++++...|-. .++.+.+++|+||++++||+++|+||||||||||+|+| |.+. +
T Consensus 1 ~~~~~l~~~~l~~~~~~-~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 1 MTQPLLAIENLSVAFRQ-QQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred CCCceEEEeceEEEecC-CCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecc
Confidence 56677888888765521 01125799999999999999999999999999999999 3221 0
Q ss_pred ----------H-HhhCceecCCCC--Cc---c----------------------hhhHHHhhcCccc---ccccCcCccH
Q psy5297 62 ----------L-AQIGCFVPCDSA--TI---S----------------------VVDQIFTRVGAAD---SQYRGISTFM 100 (185)
Q Consensus 62 ----------~-~~~g~~v~~~~~--~~---~----------------------~~~~~l~~~~l~~---~~~~~~~~lS 100 (185)
+ .+++ |+||++. .. + .++++++.+++.+ ..++++++||
T Consensus 80 ~~~~~~~~~~~~~~ig-~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LS 158 (529)
T PRK15134 80 HASEQTLRGVRGNKIA-MIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLS 158 (529)
T ss_pred cCCHHHHHHHhcCceE-EEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccC
Confidence 1 1345 9999752 11 1 1234566777764 3588999999
Q ss_pred HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297 101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK 178 (185)
Q Consensus 101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~ 178 (185)
+|||||++||+++ .+|+++||||||+++|+.....+.+. +..++++.+.|||++||+ .++..+||++++|++|+++.
T Consensus 159 gGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQL-LRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHH-HHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999 99999999999777666665555554 366655358999999999 77888999999999999998
Q ss_pred EeccC
Q psy5297 179 YLYHT 183 (185)
Q Consensus 179 ~~~~~ 183 (185)
.+.++
T Consensus 238 ~g~~~ 242 (529)
T PRK15134 238 QNRAA 242 (529)
T ss_pred eCCHH
Confidence 87654
No 173
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-36 Score=245.29 Aligned_cols=171 Identities=16% Similarity=0.182 Sum_probs=128.7
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------- 60 (185)
.++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 20 ~l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 20 ALSTKDLHVYY-----GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred EEEEeeEEEEE-----CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 34555554333 236799999999999999999999999999999999 4321
Q ss_pred ----HHHhhCceecCCCCCc--chh----------------------hHHHhhcCcc----cccccCcCccHHHHHHHHH
Q psy5297 61 ----FLAQIGCFVPCDSATI--SVV----------------------DQIFTRVGAA----DSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 61 ----~~~~~g~~v~~~~~~~--~~~----------------------~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~ 108 (185)
+...++ |+||++..+ ++. .++++.+++. +..++++.+||+||+||++
T Consensus 95 ~~~~~~~~i~-~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~ 173 (267)
T PRK14237 95 NVYEMRKHIG-MVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC 173 (267)
T ss_pred ChHHHhcceE-EEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence 011244 889876322 221 1223445553 3467889999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|||++ .+|+++|||||++|+|+.....+.+.+ ..+++ +.++|++||+ .++.++||++++|++|+++..+++++
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~--~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLEETM-FELKK--NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc--CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999 999999999997777766655555544 55543 6899999999 77889999999999999998887643
No 174
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-36 Score=239.90 Aligned_cols=150 Identities=21% Similarity=0.230 Sum_probs=120.2
Q ss_pred eEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCc---ch-
Q psy5297 28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATI---SV- 78 (185)
Q Consensus 28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~---~~- 78 (185)
|+||++++ ++++|+||||||||||+|+| |.+.+ ...++ |+||++..+ ++
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~t~~ 93 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG-LVFQQYALFPHLNVR 93 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE-EEecCCccCCCCCHH
Confidence 99999999 99999999999999999999 33211 22345 889886322 21
Q ss_pred ------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHH
Q psy5297 79 ------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACS 139 (185)
Q Consensus 79 ------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~ 139 (185)
+.++++.+++.+..++++.+||+|||||++||+++ .+|+++||||||+|+|+.....+.+.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 173 (214)
T cd03297 94 ENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173 (214)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 33456777888778899999999999999999999 99999999999777766665555554
Q ss_pred HHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEe
Q psy5297 140 IARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYL 180 (185)
Q Consensus 140 il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~ 180 (185)
+ ..++++.+.|+|++||+ .++..+||++++|++|+++..|
T Consensus 174 l-~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 174 L-KQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred H-HHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 4 55554348999999999 7788999999999999997653
No 175
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=244.45 Aligned_cols=170 Identities=16% Similarity=0.141 Sum_probs=129.4
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------- 60 (185)
.++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 4 ~l~i~~v~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYY-----GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEE-----CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 56777776554 225799999999999999999999999999999999 4321
Q ss_pred ----HHHhhCceecCCCCCc---ch----------------------hhHHHhhcCcc----cccccCcCccHHHHHHHH
Q psy5297 61 ----FLAQIGCFVPCDSATI---SV----------------------VDQIFTRVGAA----DSQYRGISTFMMEMKETA 107 (185)
Q Consensus 61 ----~~~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~~ 107 (185)
+...++ |+||+...+ ++ +.++++.+++. +..++++.+||+||+||+
T Consensus 79 ~~~~~~~~i~-~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (258)
T PRK14241 79 DPVAVRRTIG-MVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL 157 (258)
T ss_pred ChHHHhcceE-EEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH
Confidence 011234 888875221 21 12334455653 456788999999999999
Q ss_pred HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccccee------eeeEEEE
Q psy5297 108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFR------NVHESKY 179 (185)
Q Consensus 108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~------~g~i~~~ 179 (185)
+||+++ .+|+++||||||+|+|+.....+.+.+ ..+++ +.|+|++||+ .++.++||++++|+ +|+++..
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 158 CIARAIAVEPDVLLMDEPCSALDPISTLAIEDLI-NELKQ--DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 999999 999999999997777666655555544 55543 5899999999 77889999999996 7999988
Q ss_pred eccC
Q psy5297 180 LYHT 183 (185)
Q Consensus 180 ~~~~ 183 (185)
++++
T Consensus 235 ~~~~ 238 (258)
T PRK14241 235 DDTE 238 (258)
T ss_pred CCHH
Confidence 7754
No 176
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-36 Score=242.42 Aligned_cols=174 Identities=17% Similarity=0.185 Sum_probs=129.8
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-------------------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV------------------- 60 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~------------------- 60 (185)
|++---+++++...+ +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 1 ~~~~~~~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 75 (251)
T PRK14244 1 MSEIHASVKNLNLWY-----GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75 (251)
T ss_pred CCceEEEeeeEEEEE-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehH
Confidence 333334555554433 235799999999999999999999999999999999 4321
Q ss_pred --------HHHhhCceecCCCCCc--ch-----------------------hhHHHhhcCccc----ccccCcCccHHHH
Q psy5297 61 --------FLAQIGCFVPCDSATI--SV-----------------------VDQIFTRVGAAD----SQYRGISTFMMEM 103 (185)
Q Consensus 61 --------~~~~~g~~v~~~~~~~--~~-----------------------~~~~l~~~~l~~----~~~~~~~~lS~g~ 103 (185)
+...++ |+||++..+ ++ +.++++.+++.+ ..++.+.+||+||
T Consensus 76 ~~~~~~~~~~~~i~-~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 154 (251)
T PRK14244 76 SVDTNVVLLRAKVG-MVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQ 154 (251)
T ss_pred hcccchHHHhhhEE-EEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHH
Confidence 112344 899876322 11 123455666643 3567889999999
Q ss_pred HHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297 104 KETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY 181 (185)
Q Consensus 104 ~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~ 181 (185)
+||++||+++ .+|+++|||||++|+|+.....+.+.+ ..+. .+.|||++||+ .++.++||++++|++|+++..++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~--~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 155 QQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLI-QELK--KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHh--cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCC
Confidence 9999999999 999999999997777666555554433 5554 37999999999 77788999999999999998776
Q ss_pred cC
Q psy5297 182 HT 183 (185)
Q Consensus 182 ~~ 183 (185)
++
T Consensus 232 ~~ 233 (251)
T PRK14244 232 TQ 233 (251)
T ss_pred HH
Confidence 54
No 177
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-36 Score=247.53 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=121.6
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------------HHHhhCceecCCCC
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------------FLAQIGCFVPCDSA 74 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------------~~~~~g~~v~~~~~ 74 (185)
+.+++|+||++++|++++|+||||||||||+|+| |... +...++ |+||++.
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~-~v~q~~~ 130 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIG-MVFQKPN 130 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEE-EECCCCC
Confidence 5699999999999999999999999999999999 5321 012344 8898863
Q ss_pred Cc--ch----------------------hhHHHhhcCc----ccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297 75 TI--SV----------------------VDQIFTRVGA----ADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG 125 (185)
Q Consensus 75 ~~--~~----------------------~~~~l~~~~l----~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~ 125 (185)
.+ ++ +.++++.+++ .+..++++.+||+||+||++||+++ .+|+++|||||+
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt 210 (286)
T PRK14275 131 PFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPT 210 (286)
T ss_pred CCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 22 11 1233444554 3456788999999999999999999 999999999997
Q ss_pred CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+|+|+.....+.+.+ +.+++ +.|||++||+ .++.++||++++|++|++...++++
T Consensus 211 ~gLD~~~~~~l~~~L-~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~ 266 (286)
T PRK14275 211 SALDPKATAKIEDLI-QELRG--SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTA 266 (286)
T ss_pred ccCCHHHHHHHHHHH-HHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 766665555444433 55543 5899999999 7778899999999999999887754
No 178
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.5e-36 Score=247.04 Aligned_cols=178 Identities=17% Similarity=0.114 Sum_probs=135.2
Q ss_pred eEEEcccCCceeee--cC--CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------
Q psy5297 5 TLVLNQCRHPIVEL--QG--GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------ 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~--~~--~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------ 60 (185)
.++++++...+-.. .+ .++.+++|+||++++|++++|+||||||||||+|+| |.+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 56777776544210 00 136799999999999999999999999999999999 3221
Q ss_pred ----HHHhhCceecCCCC--C---cc----------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHH
Q psy5297 61 ----FLAQIGCFVPCDSA--T---IS----------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 61 ----~~~~~g~~v~~~~~--~---~~----------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ 108 (185)
+...++ |+||++. . .+ .++++++.+++. +..++++.+||+||+||++
T Consensus 83 ~~~~~~~~i~-~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 83 QRKAFRRDIQ-MVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred HHHHHHhcEE-EEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 123345 8888751 1 11 133456667775 5678899999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||+++ .+|+++|||||++|+|......+.+.+ +.++++.+.|+|++||+ .++..+||++++|++|++...+++++
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l-~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 238 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLL-KKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGD 238 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHH-HHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhh
Confidence 99999 999999999997776665555555544 55554358999999999 77788999999999999998887654
No 179
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=9.2e-37 Score=245.74 Aligned_cols=156 Identities=12% Similarity=0.115 Sum_probs=125.5
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHHH-------------HHhhCceecCCCCC---cc----
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSVF-------------LAQIGCFVPCDSAT---IS---- 77 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~~-------------~~~~g~~v~~~~~~---~~---- 77 (185)
+++|+||++++|++++|+||||||||||+|+| |.+.+ ...++ |+||++.. .+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~-~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRA-YLSQQQTPPFAMPVFQY 89 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheE-EecccCccCCCccHHHH
Confidence 79999999999999999999999999999999 33221 12345 88887521 11
Q ss_pred ----------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C-------CCeEEEEeCCCCCCCcCCh
Q psy5297 78 ----------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T-------ENSLVIIDELGRGTSTFDG 133 (185)
Q Consensus 78 ----------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~-------~p~llllDEP~~g~~~~d~ 133 (185)
.++++++.+++.+..++++.+||+|||||++||+++ . +|+++|||||++|+|+...
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~ 169 (248)
T PRK03695 90 LTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQ 169 (248)
T ss_pred HHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHH
Confidence 134567778888888999999999999999999999 6 6799999999777766655
Q ss_pred hHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 134 FGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 134 ~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
..+.+.+ ..+++ .+.|+|++||+ .++..+||++++|++|+++..++.+
T Consensus 170 ~~l~~~L-~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 218 (248)
T PRK03695 170 AALDRLL-SELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRD 218 (248)
T ss_pred HHHHHHH-HHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 5555443 56655 58999999999 7789999999999999999887654
No 180
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=247.01 Aligned_cols=177 Identities=13% Similarity=0.122 Sum_probs=132.9
Q ss_pred eEEEcccCCceeeec---------------CCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH
Q psy5297 5 TLVLNQCRHPIVELQ---------------GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF 61 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~---------------~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~ 61 (185)
.+.++|+++.|-..+ +..+.+++|+||++++|++++|+||||||||||+++| |.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 467777777653321 1334699999999999999999999999999999999 33333
Q ss_pred HHhhCceecCCCC---Ccc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 62 LAQIGCFVPCDSA---TIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 62 ~~~~g~~v~~~~~---~~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
..+.. ++++... .++ .+..+++.+++.+..++++.+||+||+||+++|+++ .+|
T Consensus 84 ~g~~~-~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p 162 (264)
T PRK13546 84 NGEVS-VIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNP 162 (264)
T ss_pred CCEEe-EEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCC
Confidence 22222 3333221 111 122345566788888899999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++|||||++|+|+.....+.+.+ ..+++ .+.|+|++||+ .++.++||++++|++|++...++.++
T Consensus 163 ~iLlLDEPt~gLD~~~~~~l~~~L-~~~~~-~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 229 (264)
T PRK13546 163 DILVIDEALSVGDQTFAQKCLDKI-YEFKE-QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDD 229 (264)
T ss_pred CEEEEeCccccCCHHHHHHHHHHH-HHHHH-CCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHH
Confidence 999999997776665545555543 55555 58999999999 77889999999999999998877543
No 181
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-36 Score=244.75 Aligned_cols=172 Identities=15% Similarity=0.186 Sum_probs=128.2
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------- 60 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------- 60 (185)
+.++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 12 ~~l~i~nl~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISY-----GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEE-----CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 456666665444 235799999999999999999999999999999999 4321
Q ss_pred -----HHHhhCceecCCCCCc--ch--------------------hhHHHhhcCc----ccccccCcCccHHHHHHHHHH
Q psy5297 61 -----FLAQIGCFVPCDSATI--SV--------------------VDQIFTRVGA----ADSQYRGISTFMMEMKETATV 109 (185)
Q Consensus 61 -----~~~~~g~~v~~~~~~~--~~--------------------~~~~l~~~~l----~~~~~~~~~~lS~g~~q~~~i 109 (185)
+...++ |+||++..+ ++ +.++++.+++ .+..++++.+||+|||||++|
T Consensus 87 ~~~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 87 VDPVEVRRRIG-MVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred CCHHHHhhceE-EEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 112345 889876322 21 1223444444 234678889999999999999
Q ss_pred HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceee-----------eeE
Q psy5297 110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRN-----------VHE 176 (185)
Q Consensus 110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~-----------g~i 176 (185)
|+++ .+|+++||||||+|+|+.....+.+.+ ..+++ +.|||++||+ .++..+||++++|++ |++
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~ 242 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETM-HELKK--NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc--CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence 9999 999999999997776665555554433 55543 6899999999 788899999999996 567
Q ss_pred EEEeccCC
Q psy5297 177 SKYLYHTN 184 (185)
Q Consensus 177 ~~~~~~~~ 184 (185)
++.+++++
T Consensus 243 ~~~~~~~~ 250 (269)
T PRK14259 243 VEFNETKK 250 (269)
T ss_pred EEeCCHHH
Confidence 88776543
No 182
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-36 Score=241.49 Aligned_cols=173 Identities=13% Similarity=0.147 Sum_probs=131.1
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV--------------------- 60 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~--------------------- 60 (185)
++.++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 2 ~~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (251)
T PRK14270 2 KIKMESKNLNLWY-----GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76 (251)
T ss_pred ccEEEEEEeEEEE-----CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccc
Confidence 3556777776544 235799999999999999999999999999999999 4321
Q ss_pred ------HHHhhCceecCCCCCc--chh----------------------hHHHhhcCcc----cccccCcCccHHHHHHH
Q psy5297 61 ------FLAQIGCFVPCDSATI--SVV----------------------DQIFTRVGAA----DSQYRGISTFMMEMKET 106 (185)
Q Consensus 61 ------~~~~~g~~v~~~~~~~--~~~----------------------~~~l~~~~l~----~~~~~~~~~lS~g~~q~ 106 (185)
+...++ |+||++..+ ++. .++++.+++. +..++++.+||+||+||
T Consensus 77 ~~~~~~~~~~i~-~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 155 (251)
T PRK14270 77 DVDVVELRKRVG-MVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQR 155 (251)
T ss_pred cccHHHHHhheE-EEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 012244 888876322 211 1234455542 34678899999999999
Q ss_pred HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
++||+++ .+|+++||||||+|+|+.....+.+.+ ..+++ +.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L-~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLM-VELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 9999999 999999999997777666655554533 55554 5899999999 77889999999999999998877643
No 183
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-36 Score=242.53 Aligned_cols=170 Identities=15% Similarity=0.176 Sum_probs=128.1
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------- 60 (185)
.+++++++..+ +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFY-----GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEE-----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 46777776655 125699999999999999999999999999999999 4211
Q ss_pred ----HHHhhCceecCCCCC--cchhhH----------------------HHhhcCcc----cccccCcCccHHHHHHHHH
Q psy5297 61 ----FLAQIGCFVPCDSAT--ISVVDQ----------------------IFTRVGAA----DSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 61 ----~~~~~g~~v~~~~~~--~~~~~~----------------------~l~~~~l~----~~~~~~~~~lS~g~~q~~~ 108 (185)
++..++ |+||++.. .++.++ +++.+++. +..++++.+||+||+||++
T Consensus 78 ~~~~~~~~i~-~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 156 (250)
T PRK14240 78 DVNQLRKRVG-MVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLC 156 (250)
T ss_pred chHHHhccEE-EEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHH
Confidence 112344 88887632 222222 22333332 3457788999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
|||++ .+|+++|||||++|+|+.....+.+.+ ..+++ +.|+|++||+ .++.++||++++|++|+++..++++
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~--~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 230 (250)
T PRK14240 157 IARALAVEPEVLLMDEPTSALDPISTLKIEELI-QELKK--DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTV 230 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhc--CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999 999999999997776666555554433 55543 6899999999 7788999999999999999887654
No 184
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=4.6e-36 Score=237.13 Aligned_cols=167 Identities=13% Similarity=0.135 Sum_probs=124.5
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~ 64 (185)
++++++...| .++.+.+++|+||++++|++++|+||||||||||+++| |.+.+ ...
T Consensus 3 l~~~~l~~~~---~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 3 IEFRNVSFSY---PNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred EEEEEEEEEc---CCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 5566665443 11225699999999999999999999999999999999 33211 223
Q ss_pred hCceecCCCCCc--ch---------------hhHHHhhcCcccccccC-----------cCccHHHHHHHHHHHHhC-CC
Q psy5297 65 IGCFVPCDSATI--SV---------------VDQIFTRVGAADSQYRG-----------ISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 65 ~g~~v~~~~~~~--~~---------------~~~~l~~~~l~~~~~~~-----------~~~lS~g~~q~~~ia~~l-~~ 115 (185)
++ |+||++..+ ++ +.++++.+++.+..++. +.+||+||+||++||+++ .+
T Consensus 80 i~-~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 80 IG-YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred EE-EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 45 999886322 22 22344556666555543 469999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEE
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~ 179 (185)
|+++||||||+|+|+.....+.+.+ +.+++ +.|||++||+.+..++||+++++++|+++..
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERL-RQLLG--DKTLIIITHRPSLLDLVDRIIVMDSGRIVAD 219 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHH-HHhcC--CCEEEEEeCCHHHHHhCCEEEEEeCCeEeec
Confidence 9999999997777776666555544 55554 3899999999444589999999999998754
No 185
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.2e-36 Score=233.36 Aligned_cols=145 Identities=18% Similarity=0.126 Sum_probs=114.5
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH----HHHHHHHh--------hCceecCCCCCcchhhHHHhhcCcc
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI----GVSVFLAQ--------IGCFVPCDSATISVVDQIFTRVGAA 89 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i----G~i~~~~~--------~g~~v~~~~~~~~~~~~~l~~~~l~ 89 (185)
..++++|+||++++|++++|+||||||||||||++ |.+.+... ++ |++| .++++.+++.
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~-~~~q--------~~~l~~~~L~ 77 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLI-FIDQ--------LQFLIDVGLG 77 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEE-EEhH--------HHHHHHcCCC
Confidence 46799999999999999999999999999999998 33322111 12 3333 4578889987
Q ss_pred c-ccccCcCccHHHHHHHHHHHHhC-CC--CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297 90 D-SQYRGISTFMMEMKETATVIKKC-TE--NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS 165 (185)
Q Consensus 90 ~-~~~~~~~~lS~g~~q~~~ia~~l-~~--p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~ 165 (185)
+ ..++++.+||+||+||+++|+++ .+ |+++|||||++++|+.....+.+.+ +.+.+ .|.|||++||+.+..+.|
T Consensus 78 ~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tvIivSH~~~~~~~~ 155 (176)
T cd03238 78 YLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVI-KGLID-LGNTVILIEHNLDVLSSA 155 (176)
T ss_pred ccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCCHHHHHhC
Confidence 6 47899999999999999999999 99 9999999997776666555555544 55554 589999999994445789
Q ss_pred ccccceeeeeEE
Q psy5297 166 RVIPTFRNVHES 177 (185)
Q Consensus 166 d~~~~l~~g~i~ 177 (185)
|++++|.+|+..
T Consensus 156 d~i~~l~~g~~~ 167 (176)
T cd03238 156 DWIIDFGPGSGK 167 (176)
T ss_pred CEEEEECCCCCC
Confidence 999999775543
No 186
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.7e-36 Score=241.04 Aligned_cols=157 Identities=13% Similarity=0.125 Sum_probs=118.9
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhCceecCCCCCc--chh
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIGCFVPCDSATI--SVV 79 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g~~v~~~~~~~--~~~ 79 (185)
+++++|+||++++|++++|+||||||||||+|+| |.|.+ ...++ |+||++..+ ++.
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~ 93 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG-VVLQENVLFNRSIR 93 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE-EEcCCchhccchHH
Confidence 5699999999999999999999999999999999 32211 23355 999986322 221
Q ss_pred hHH---------------Hhhc-----------CcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297 80 DQI---------------FTRV-----------GAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD 132 (185)
Q Consensus 80 ~~~---------------l~~~-----------~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d 132 (185)
+++ ++.. ++....++++.+||+|||||++||+++ .+|+++||||||+|+|+..
T Consensus 94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (237)
T cd03252 94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173 (237)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 111 1112 223334667899999999999999999 9999999999977776666
Q ss_pred hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
...+.+.+ ..++ .+.|||++||+ .++ ..||++++|++|+++..+++++
T Consensus 174 ~~~l~~~l-~~~~--~~~tiii~sH~~~~~-~~~d~v~~l~~G~i~~~~~~~~ 222 (237)
T cd03252 174 EHAIMRNM-HDIC--AGRTVIIIAHRLSTV-KNADRIIVMEKGRIVEQGSHDE 222 (237)
T ss_pred HHHHHHHH-HHhc--CCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEEcCHHH
Confidence 55555544 5554 38899999999 555 5799999999999998877543
No 187
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=100.00 E-value=8.4e-36 Score=233.06 Aligned_cols=169 Identities=30% Similarity=0.511 Sum_probs=145.3
Q ss_pred EEcccCCceeeecCCceeeeceEEEeeCCc-eeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCC-CCcchhhHHHh
Q psy5297 7 VLNQCRHPIVELQGGVSYIPNDVYFKSGEV-SFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS-ATISVVDQIFT 84 (185)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~il~~isl~i~~g-~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~-~~~~~~~~~l~ 84 (185)
++++++||+++.. . ..+-++||++++| ++++|+||||||||||||+|+.+.+.++.|.++|... ...+.+++++.
T Consensus 1 ~~~~~~hp~~~~~-~--~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~ 77 (200)
T cd03280 1 RLREARHPLLPLQ-G--EKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFA 77 (200)
T ss_pred CCcccCCCEEecc-C--CceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEE
Confidence 3789999999853 2 2344566666788 5899999999999999999998888999999999876 45666788888
Q ss_pred hcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297 85 RVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL 164 (185)
Q Consensus 85 ~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~ 164 (185)
.++..+..+...++||+||+|+..+++++.+|+++++|||++|+|+.+...+.+.+++.+.+ .+.++|++||+.++.++
T Consensus 78 ~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~~l~~~ 156 (200)
T cd03280 78 DIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHYGELKAY 156 (200)
T ss_pred ecCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCHHHHHHH
Confidence 88888889999999999999999999988999999999999999988877776655677775 58999999999888899
Q ss_pred hccccceeeeeEEEE
Q psy5297 165 SRVIPTFRNVHESKY 179 (185)
Q Consensus 165 ~d~~~~l~~g~i~~~ 179 (185)
||+++.+++|++...
T Consensus 157 ~d~~~~l~~g~l~~~ 171 (200)
T cd03280 157 AYKREGVENASMEFD 171 (200)
T ss_pred HhcCCCeEEEEEEEe
Confidence 999999999999766
No 188
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.3e-36 Score=241.46 Aligned_cols=158 Identities=20% Similarity=0.153 Sum_probs=121.3
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHh------hC-ceecCCC-----------C
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQ------IG-CFVPCDS-----------A 74 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~------~g-~~v~~~~-----------~ 74 (185)
+.+.+++|+||++++|++++|+||||||||||+|+| |.+.+..+ .+ .+.|... .
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~ 112 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLL 112 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHc
Confidence 346799999999999999999999999999999999 33322111 11 0222111 0
Q ss_pred Ccc------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhc
Q psy5297 75 TIS------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASN 147 (185)
Q Consensus 75 ~~~------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~ 147 (185)
... .+.++++.+++.+..++++.+||+|||||++||+++ .+|+++|||||++|+|+.....+.+.+ ..+.+
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l-~~~~~- 190 (224)
T cd03220 113 GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRL-RELLK- 190 (224)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHh-
Confidence 000 234556777888888999999999999999999999 999999999997777766655555544 56655
Q ss_pred CCCeEEEecCh-hHHHHhhccccceeeeeEEEEe
Q psy5297 148 RQPFTLFATHF-HEIALLSRVIPTFRNVHESKYL 180 (185)
Q Consensus 148 ~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~ 180 (185)
.+.|||++||+ .++..+||+++++++|+++..|
T Consensus 191 ~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 191 QGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 48899999999 7788899999999999987643
No 189
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.8e-37 Score=269.22 Aligned_cols=160 Identities=19% Similarity=0.176 Sum_probs=127.9
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHHH----------------HHhhCceecCCCC--C--
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSVF----------------LAQIGCFVPCDSA--T-- 75 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~~----------------~~~~g~~v~~~~~--~-- 75 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.|.+ ...++ |+||++. .
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~-~v~q~~~~~l~~ 377 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQ-VVFQDPNSSLNP 377 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceE-EEEeCchhhcCC
Confidence 5699999999999999999999999999999999 33321 12355 9998751 1
Q ss_pred -cch-----------------------hhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCC
Q psy5297 76 -ISV-----------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTS 129 (185)
Q Consensus 76 -~~~-----------------------~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~ 129 (185)
.++ +.++++.+++. +..++++.+||+|||||++||+++ .+|+++||||||+|+|
T Consensus 378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 457 (529)
T PRK15134 378 RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457 (529)
T ss_pred cccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccC
Confidence 111 23456677886 467899999999999999999999 9999999999977776
Q ss_pred cCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 130 TFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 130 ~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+.....+.+.+ ..++++.+.|||++||+ .++..+||++++|++|++++.+++++
T Consensus 458 ~~~~~~l~~~l-~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 512 (529)
T PRK15134 458 KTVQAQILALL-KSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCER 512 (529)
T ss_pred HHHHHHHHHHH-HHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHH
Confidence 66655555544 56655358999999999 78889999999999999998876643
No 190
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=4.4e-36 Score=238.44 Aligned_cols=172 Identities=18% Similarity=0.239 Sum_probs=129.1
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------H
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------F 61 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~ 61 (185)
++.+++++++..+ +++.+++|+||++++|++++|+||||||||||+|+| |.+. +
T Consensus 5 ~~~i~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (225)
T PRK10247 5 SPLLQLQNVGYLA-----GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79 (225)
T ss_pred CceEEEeccEEee-----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHH
Confidence 3457777776544 235799999999999999999999999999999999 3221 1
Q ss_pred HHhhCceecCCCCCc--c-------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeE
Q psy5297 62 LAQIGCFVPCDSATI--S-------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSL 118 (185)
Q Consensus 62 ~~~~g~~v~~~~~~~--~-------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~l 118 (185)
...++ |+||++..+ + .+.++++.+++. ...++++.+||+||+||++||+++ .+|++
T Consensus 80 ~~~i~-~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (225)
T PRK10247 80 RQQVS-YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV 158 (225)
T ss_pred HhccE-EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 22345 888875322 1 133566777885 467899999999999999999999 99999
Q ss_pred EEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccccee-eeeEEEEecc
Q psy5297 119 VIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFR-NVHESKYLYH 182 (185)
Q Consensus 119 lllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~-~g~i~~~~~~ 182 (185)
+||||||+|+|+.....+.+.+ ..+.++.+.|+|++||+ .++ ..||++++|+ ++..+.+++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tvii~sh~~~~~-~~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 159 LLLDEITSALDESNKHNVNEII-HRYVREQNIAVLWVTHDKDEI-NHADKVITLQPHAGEMQEARY 222 (225)
T ss_pred EEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEECChHHH-HhCCEEEEEecccchHhhhhh
Confidence 9999997777666555555544 55554358999999999 555 5799999995 4444455543
No 191
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-36 Score=241.24 Aligned_cols=171 Identities=14% Similarity=0.168 Sum_probs=129.0
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------- 60 (185)
.+++++++..+ +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYY-----GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEe-----CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 46777776544 235799999999999999999999999999999999 3211
Q ss_pred ----HHHhhCceecCCCCC--cchh----------------------hHHHhhcCccc----ccccCcCccHHHHHHHHH
Q psy5297 61 ----FLAQIGCFVPCDSAT--ISVV----------------------DQIFTRVGAAD----SQYRGISTFMMEMKETAT 108 (185)
Q Consensus 61 ----~~~~~g~~v~~~~~~--~~~~----------------------~~~l~~~~l~~----~~~~~~~~lS~g~~q~~~ 108 (185)
+...++ |+||++.. .++. .++++.+++.+ ..++++.+||+||+||++
T Consensus 78 ~~~~~~~~i~-~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~ 156 (250)
T PRK14262 78 DVTEYRKKVG-MVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLC 156 (250)
T ss_pred hHHHhhhhEE-EEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHH
Confidence 112344 88887632 2221 12233445432 357888999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||+++ .+|+++|||||++|+|......+.+.+ ..+++ +.|+|++||+ .++..+||++++|++|+++..+++++
T Consensus 157 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~--~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 157 IARALAVEPEVILLDEPTSALDPIATQRIEKLL-EELSE--NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHH-HHHhc--CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999 999999999997776666555554443 55543 6899999999 67889999999999999998887643
No 192
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-36 Score=229.49 Aligned_cols=172 Identities=17% Similarity=0.158 Sum_probs=140.9
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH---------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV--------------- 60 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~--------------- 60 (185)
+.+.++|+...| +...+|++||++.++|+++.|+|.+||||||||||| |.|.
T Consensus 5 ~~l~v~dlHK~~-----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~ 79 (256)
T COG4598 5 NALEVEDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ 79 (256)
T ss_pred cceehhHHHhhc-----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCC
Confidence 356666666555 446799999999999999999999999999999999 3332
Q ss_pred -----------HHHhhCceecCCCCCcc-------------------------hhhHHHhhcCcccccccCcCccHHHHH
Q psy5297 61 -----------FLAQIGCFVPCDSATIS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMK 104 (185)
Q Consensus 61 -----------~~~~~g~~v~~~~~~~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~ 104 (185)
++.+.+ +|||..+..+ .++.++.++|+.+..+.+|..|||||+
T Consensus 80 l~~ad~~q~~r~Rs~L~-mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQ 158 (256)
T COG4598 80 LKPADKRQLQRLRTRLG-MVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQ 158 (256)
T ss_pred eeeCCHHHHHHHHHHhh-HhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHH
Confidence 234556 8888763322 356678899999999999999999999
Q ss_pred HHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEe
Q psy5297 105 ETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYL 180 (185)
Q Consensus 105 q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~ 180 (185)
||++|||++ .+|+++|+||| |+.+|++-..+.+ ++.+++ .|.|++++||. ..+...+.+++++++|.|.++|
T Consensus 159 QR~aIARaLameP~vmLFDEP---TSALDPElVgEVLkv~~~LAe-EgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 159 QRVAIARALAMEPEVMLFDEP---TSALDPELVGEVLKVMQDLAE-EGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred HHHHHHHHHhcCCceEeecCC---cccCCHHHHHHHHHHHHHHHH-hCCeEEEEeeehhHHHhhhhheEEeecceecccC
Confidence 999999999 99999999999 5555555444432 588887 69999999998 6777899999999999999999
Q ss_pred ccCCC
Q psy5297 181 YHTNV 185 (185)
Q Consensus 181 ~~~~~ 185 (185)
+|+++
T Consensus 235 ~P~qv 239 (256)
T COG4598 235 PPEQV 239 (256)
T ss_pred ChHHH
Confidence 98753
No 193
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-36 Score=240.41 Aligned_cols=170 Identities=12% Similarity=0.098 Sum_probs=128.8
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------- 60 (185)
.++++++...| +++.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFY-----GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEE-----CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 56777776544 236799999999999999999999999999999999 4321
Q ss_pred ---HHHhhCceecCCCCCc--chhhH----------------------HHhhcCcc----cccccCcCccHHHHHHHHHH
Q psy5297 61 ---FLAQIGCFVPCDSATI--SVVDQ----------------------IFTRVGAA----DSQYRGISTFMMEMKETATV 109 (185)
Q Consensus 61 ---~~~~~g~~v~~~~~~~--~~~~~----------------------~l~~~~l~----~~~~~~~~~lS~g~~q~~~i 109 (185)
+...++ |+||++..+ ++.++ +++.+++. +..++++.+||+||+||++|
T Consensus 78 ~~~~~~~i~-~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 156 (249)
T PRK14253 78 VADLRIKVG-MVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCI 156 (249)
T ss_pred hHHHHhhee-EEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHH
Confidence 112344 888886322 22111 22333432 34567889999999999999
Q ss_pred HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
|+++ .+|+++|||||++|+|+.....+.+. ++.+++ +.|||++||+ .++..+||++++|++|+++..++++
T Consensus 157 aral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (249)
T PRK14253 157 ARTIAMEPDVILMDEPTSALDPIATHKIEEL-MEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQ 229 (249)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999 99999999999777766655555553 366654 5899999999 7788999999999999999887654
No 194
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-36 Score=246.21 Aligned_cols=172 Identities=16% Similarity=0.160 Sum_probs=127.2
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV--------------------- 60 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~--------------------- 60 (185)
++.++++++...| +++.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 37 ~~~l~i~~l~~~~-----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~ 111 (285)
T PRK14254 37 ETVIEARDLNVFY-----GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111 (285)
T ss_pred CceEEEEEEEEEE-----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 3345555554333 235799999999999999999999999999999999 4321
Q ss_pred ------HHHhhCceecCCCCCc--ch--------------------hhHHHhhcCcc----cccccCcCccHHHHHHHHH
Q psy5297 61 ------FLAQIGCFVPCDSATI--SV--------------------VDQIFTRVGAA----DSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 61 ------~~~~~g~~v~~~~~~~--~~--------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~ 108 (185)
+...++ |+||++..+ ++ +.++++.+++. +..++++.+||+|||||++
T Consensus 112 ~~~~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 112 DVDPVALRRRIG-MVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred ccchHhhhccEE-EEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence 011234 888876322 21 12344555653 3467889999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccc-ceeeeeEEEEeccC
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIP-TFRNVHESKYLYHT 183 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~-~l~~g~i~~~~~~~ 183 (185)
||+++ .+|+++|||||++|+|+.....+.+. ++.+++ +.|+|++||+ .++..+||+++ +|++|+++..++++
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~-L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDL-IEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 99999 99999999999777766655555443 356654 4799999999 77788999975 67999998877653
No 195
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=264.67 Aligned_cols=170 Identities=16% Similarity=0.190 Sum_probs=133.4
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------- 61 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------- 61 (185)
+.+++++++..| +++.+++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 3 ~~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (501)
T PRK11288 3 PYLSFDGIGKTF-----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAAL 77 (501)
T ss_pred ceEEEeeeEEEE-----CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHH
Confidence 456777766544 235799999999999999999999999999999999 43322
Q ss_pred HHhhCceecCCCCC---cc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297 62 LAQIGCFVPCDSAT---IS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 62 ~~~~g~~v~~~~~~---~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
..+++ |+||.+.. ++ .+.++++.+++.+..++++++||+|||||++||+++
T Consensus 78 ~~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (501)
T PRK11288 78 AAGVA-IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA 156 (501)
T ss_pred hCCEE-EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHH
Confidence 22355 88887521 11 123456677887777899999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY 181 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~ 181 (185)
.+|+++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++..+||++++|++|+++..++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 157 RNARVIAFDEPTSSLSAREIEQLFRVI-RELRA-EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred hCCCEEEEcCCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 999999999997776666555555544 56655 58999999999 77889999999999999987654
No 196
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-36 Score=263.74 Aligned_cols=176 Identities=16% Similarity=0.126 Sum_probs=135.1
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-H--------HHHH--------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-G--------VSVF-------------- 61 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G--------~i~~-------------- 61 (185)
.++++++...|-. ++++.+++|+||++++|++++|+||||||||||+|+| | .|.+
T Consensus 259 ~l~~~~l~~~~~~--~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 259 ILEVRNLTAWDPV--NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred eEEEecCcccccc--ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 3555555443310 0124699999999999999999999999999999999 2 2221
Q ss_pred HHhhCceecCCCC------Ccc--------------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHH
Q psy5297 62 LAQIGCFVPCDSA------TIS--------------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 62 ~~~~g~~v~~~~~------~~~--------------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ 108 (185)
...++ |+||++. .++ .++++++.+++. +..++++.+||+|||||++
T Consensus 337 ~~~i~-~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~ 415 (506)
T PRK13549 337 AQGIA-MVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAV 415 (506)
T ss_pred HCCCE-EeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHH
Confidence 11245 8888731 111 123456777885 5678999999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
||+++ .+|+++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++.++||++++|++|+++..++++++
T Consensus 416 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~l~~-~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 416 LAKCLLLNPKILILDEPTRGIDVGAKYEIYKLI-NQLVQ-QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHH-HHHHH-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 99999 999999999998887777666665544 66766 58999999999 788899999999999999988877653
No 197
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-36 Score=244.37 Aligned_cols=159 Identities=15% Similarity=0.130 Sum_probs=122.0
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------------HHHhhCceecCCC
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------------FLAQIGCFVPCDS 73 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------------~~~~~g~~v~~~~ 73 (185)
++.+++|+||++++|++++|+||||||||||+|+| |... +...++ |+||++
T Consensus 32 ~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~-~v~q~~ 110 (274)
T PRK14265 32 GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVG-MVFQRP 110 (274)
T ss_pred CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEE-EEccCC
Confidence 35799999999999999999999999999999999 3211 112344 899886
Q ss_pred CCc--chhh--------------------HHHhhcCc----ccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCC
Q psy5297 74 ATI--SVVD--------------------QIFTRVGA----ADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGR 126 (185)
Q Consensus 74 ~~~--~~~~--------------------~~l~~~~l----~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~ 126 (185)
..+ ++.+ ++++.+++ .+..++++.+||+||+||++||+++ .+|+++||||||+
T Consensus 111 ~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~ 190 (274)
T PRK14265 111 NPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCS 190 (274)
T ss_pred ccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 322 2222 12333443 2345788899999999999999999 9999999999977
Q ss_pred CCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccccee---------eeeEEEEeccCC
Q psy5297 127 GTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFR---------NVHESKYLYHTN 184 (185)
Q Consensus 127 g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~---------~g~i~~~~~~~~ 184 (185)
|+|+.....+.+.+ ..+++ +.|||++||+ .++.++||++++|+ +|+++..+++++
T Consensus 191 ~LD~~~~~~l~~~L-~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~ 255 (274)
T PRK14265 191 ALDPISTRQVEELC-LELKE--QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQ 255 (274)
T ss_pred cCCHHHHHHHHHHH-HHHhc--CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHH
Confidence 76666555555544 55543 6899999999 78889999999997 799998887654
No 198
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=232.64 Aligned_cols=173 Identities=18% Similarity=0.183 Sum_probs=147.3
Q ss_pred EcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--------HhhCceecC
Q psy5297 8 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--------AQIGCFVPC 71 (185)
Q Consensus 8 ~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--------~~~g~~v~~ 71 (185)
..+..|-++++++....+++|+|+++.+|++++++||+||||||||+++ |.|.+. +.-| .|||
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaerg-vVFQ 81 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERG-VVFQ 81 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccce-eEec
Confidence 3456677788877556699999999999999999999999999999999 333332 1234 8999
Q ss_pred CCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCC
Q psy5297 72 DSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGR 126 (185)
Q Consensus 72 ~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~ 126 (185)
++..++ .+.+.+..+|+++..++.+-+||||||||+.|||++ .+|++++|||||.
T Consensus 82 ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfg 161 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFG 161 (259)
T ss_pred cCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchh
Confidence 886665 255677889999999999999999999999999999 9999999999999
Q ss_pred CCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceee--eeEEEEecc
Q psy5297 127 GTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRN--VHESKYLYH 182 (185)
Q Consensus 127 g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~--g~i~~~~~~ 182 (185)
.+|.+.++.+...+++.+++ .|+.++++||+ ++..-+++++++|.- |+|+...++
T Consensus 162 AlDa~tRe~mQelLldlw~~-tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 162 ALDALTREQMQELLLDLWQE-TGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHH-hCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 99999988888887777776 79999999999 999999999999984 788876654
No 199
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-36 Score=244.43 Aligned_cols=172 Identities=14% Similarity=0.129 Sum_probs=129.4
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------- 60 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------- 60 (185)
+.+++++++..| +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 20 ~~l~i~nl~~~~-----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 20 PAMAAVNLTLGF-----AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred cEEEEeeEEEEE-----CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence 455666665543 236799999999999999999999999999999999 4321
Q ss_pred ----HHHhhCceecCCCCCc--chh----------------------hHHHhhcCccc----ccccCcCccHHHHHHHHH
Q psy5297 61 ----FLAQIGCFVPCDSATI--SVV----------------------DQIFTRVGAAD----SQYRGISTFMMEMKETAT 108 (185)
Q Consensus 61 ----~~~~~g~~v~~~~~~~--~~~----------------------~~~l~~~~l~~----~~~~~~~~lS~g~~q~~~ 108 (185)
+...++ |+||++..+ ++. .++++.+++.+ ..++.+.+||+||+||++
T Consensus 95 ~~~~~~~~i~-~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 95 DVLEFRRRVG-MLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred hhHHHhhheE-EeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 122345 899876322 221 22344555542 356778999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|||++ .+|+++||||||+|+|......+.+. +..+++ +.|||++||+ .++.++||++++|++|+++..+++++
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEF-IRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999 99999999999777666555544443 355554 4899999999 77889999999999999998877543
No 200
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-36 Score=241.01 Aligned_cols=170 Identities=16% Similarity=0.158 Sum_probs=127.0
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------- 60 (185)
.++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T PRK14272 4 LLSAQDVNIYY-----GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV 78 (252)
T ss_pred EEEEeeeEEEE-----CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc
Confidence 45666665544 236799999999999999999999999999999999 3311
Q ss_pred ----HHHhhCceecCCCCCc---chhhHH----------------------HhhcCc----ccccccCcCccHHHHHHHH
Q psy5297 61 ----FLAQIGCFVPCDSATI---SVVDQI----------------------FTRVGA----ADSQYRGISTFMMEMKETA 107 (185)
Q Consensus 61 ----~~~~~g~~v~~~~~~~---~~~~~~----------------------l~~~~l----~~~~~~~~~~lS~g~~q~~ 107 (185)
+...++ |+||++..+ ++.+++ ++.+++ .+..++++++||+||+||+
T Consensus 79 ~~~~~~~~i~-~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14272 79 DPVAMRRRVG-MVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRL 157 (252)
T ss_pred CHHHhhceeE-EEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHH
Confidence 112344 888876322 222221 122322 2345778899999999999
Q ss_pred HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+||+++ .+|+++|||||++|+|......+.+. ++.+++ +.|+|++||+ .++..+||++++|++|+++..++++
T Consensus 158 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14272 158 CIARALAVEPEILLMDEPTSALDPASTARIEDL-MTDLKK--VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTD 232 (252)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999 99999999999777666555544443 355553 6899999999 7788899999999999999887754
No 201
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-36 Score=242.91 Aligned_cols=172 Identities=15% Similarity=0.088 Sum_probs=132.4
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH------------------------
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV------------------------ 60 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~------------------------ 60 (185)
++++++...+ +++.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 2 l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 2 LTADHLHVAR-----RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred eEEEEEEEEE-----CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence 4566665433 236799999999999999999999999999999999 3211
Q ss_pred ----HHHhhCceecCCCC---Ccch-------------------------hhHHHhhcCcccccccCcCccHHHHHHHHH
Q psy5297 61 ----FLAQIGCFVPCDSA---TISV-------------------------VDQIFTRVGAADSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 61 ----~~~~~g~~v~~~~~---~~~~-------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ 108 (185)
+...++ |+||++. .+++ +.++++.+++.+..++++++||+||+||++
T Consensus 77 ~~~~~~~~~~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 155 (272)
T PRK13547 77 DAPRLARLRA-VLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQ 155 (272)
T ss_pred CHHHHHhhcE-EecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence 011234 8888642 1121 234455677777788999999999999999
Q ss_pred HHHhC-C---------CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEE
Q psy5297 109 VIKKC-T---------ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHES 177 (185)
Q Consensus 109 ia~~l-~---------~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~ 177 (185)
||+++ . +|+++||||||+|+|+.....+.+.+ ..++++.+.|||++||+ .++..+||++++|++|+++
T Consensus 156 laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~ 234 (272)
T PRK13547 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTV-RRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV 234 (272)
T ss_pred HHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 99999 5 89999999997777776666555544 55655348999999999 7788899999999999999
Q ss_pred EEeccCC
Q psy5297 178 KYLYHTN 184 (185)
Q Consensus 178 ~~~~~~~ 184 (185)
..+++++
T Consensus 235 ~~g~~~~ 241 (272)
T PRK13547 235 AHGAPAD 241 (272)
T ss_pred EecCHHH
Confidence 8877543
No 202
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-36 Score=263.81 Aligned_cols=159 Identities=20% Similarity=0.190 Sum_probs=128.7
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCCCCC---cc
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCDSAT---IS 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~~~~---~~ 77 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.|.+ ...++ |+||++.. ++
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~t 89 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGIS-MVHQELNLVLQRS 89 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEE-EEecccccccCCC
Confidence 5799999999999999999999999999999999 43322 12345 88887521 11
Q ss_pred ------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297 78 ------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD 132 (185)
Q Consensus 78 ------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d 132 (185)
.+.++++.+++.+..++++.+||+|||||++||+++ .+|+++||||||+|+|+..
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~ 169 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE 169 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 123456667777778899999999999999999999 9999999999977776666
Q ss_pred hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
...+.+.+ ..+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus 170 ~~~l~~~l-~~l~~-~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 170 VNHLFTII-RKLKE-RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred HHHHHHHH-HHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhh
Confidence 55555543 66665 58999999999 77889999999999999998887654
No 203
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-36 Score=240.48 Aligned_cols=170 Identities=13% Similarity=0.138 Sum_probs=128.7
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------- 60 (185)
.++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 4 ~l~~~~l~~~~-----~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 4 KIKIRGVNFFY-----HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred eEEEEEEEEEE-----CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 47777776544 225699999999999999999999999999999999 3211
Q ss_pred ----HHHhhCceecCCCCCcc--hhh----------------------HHHhhcCcc----cccccCcCccHHHHHHHHH
Q psy5297 61 ----FLAQIGCFVPCDSATIS--VVD----------------------QIFTRVGAA----DSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 61 ----~~~~~g~~v~~~~~~~~--~~~----------------------~~l~~~~l~----~~~~~~~~~lS~g~~q~~~ 108 (185)
+...++ |+||++..++ +.+ +++..+++. +..++++.+||+||+||++
T Consensus 79 ~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~ 157 (251)
T PRK14249 79 DVVNLRKRVG-MVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLC 157 (251)
T ss_pred ChHHhhceEE-EEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 112244 8888863222 111 122334432 3457889999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
|||++ .+|+++|||||++|+|+.....+.+.+ ..+. .+.|||++||+ .++..+||++++|++|++...++++
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~--~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~ 231 (251)
T PRK14249 158 IARVLAIEPEVILMDEPCSALDPVSTMRIEELM-QELK--QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTG 231 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHh--cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHH
Confidence 99999 999999999997776666655555543 5554 37899999999 7888999999999999999887654
No 204
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-36 Score=241.48 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=126.6
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhCceecCCCCCc---ch----
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIGCFVPCDSATI---SV---- 78 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g~~v~~~~~~~---~~---- 78 (185)
+++|+||++++|++++|+||||||||||+++| |.+.+ ...++ |+||+...+ ++
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~-~~~q~~~~~~~~t~~e~l 92 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS-YVPQNYALFPHMTVYKNI 92 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEE-EEeecCccCCCccHHHHH
Confidence 89999999999999999999999999999999 43322 22345 888876322 11
Q ss_pred -----------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH
Q psy5297 79 -----------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI 140 (185)
Q Consensus 79 -----------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i 140 (185)
+.++++.+++.+..++.+.+||+||+||++||+++ .+|++++||||++|+|......+.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 172 (235)
T cd03299 93 AYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREEL 172 (235)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHH
Confidence 23456778888888999999999999999999999 999999999997776666655554433
Q ss_pred HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 141 ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 141 l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+.+.++.+.|+|++||+ .++.++||++++|++|+++..++++
T Consensus 173 -~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 215 (235)
T cd03299 173 -KKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPE 215 (235)
T ss_pred -HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 55554358999999999 7788899999999999999887654
No 205
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-36 Score=249.22 Aligned_cols=173 Identities=13% Similarity=0.143 Sum_probs=129.8
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------- 60 (185)
.++++++...|- ++.+++|+|+||++++|++++|+||||||||||+++| |...
T Consensus 80 ~i~~~nls~~y~---~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 80 VFEIRNFNFWYM---NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred eEEEEeeEEEec---CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 445555544331 1235699999999999999999999999999999999 3321
Q ss_pred ----HHHhhCceecCCCCCc--chh----------------------hHHHhhcCc----ccccccCcCccHHHHHHHHH
Q psy5297 61 ----FLAQIGCFVPCDSATI--SVV----------------------DQIFTRVGA----ADSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 61 ----~~~~~g~~v~~~~~~~--~~~----------------------~~~l~~~~l----~~~~~~~~~~lS~g~~q~~~ 108 (185)
++..++ |+||++..+ ++. ..+++.+++ ....+++..+||+|||||++
T Consensus 157 ~~~~lr~~i~-~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~ 235 (329)
T PRK14257 157 SSLELRTRIG-MVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLC 235 (329)
T ss_pred chHhhhccEE-EEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHH
Confidence 123345 999987332 221 122344444 23457888999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|||++ .+|+++|||||++++|+.....+.+.+ ..+.+ ++|+|++||+ ..+.++||++++|++|++++.|++++
T Consensus 236 LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i-~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~ 310 (329)
T PRK14257 236 IARAIALEPEVLLMDEPTSALDPIATAKIEELI-LELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKT 310 (329)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999 999999999997777665555544433 55554 6899999999 77788999999999999999998765
No 206
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6e-36 Score=244.36 Aligned_cols=173 Identities=12% Similarity=0.109 Sum_probs=132.0
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHH-------------HHHh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSV-------------FLAQ 64 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~-------------~~~~ 64 (185)
.++++++...|- ++..++++|+||++++|++++|+||||||||||+++| |.|. ++..
T Consensus 2 ~i~~~nls~~~~---~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 2 QMTVKDLTAKYT---EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred eEEEEEEEEEeC---CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhh
Confidence 366777765442 2235699999999999999999999999999999999 3221 1234
Q ss_pred hCceecCCCCCcc----------------hhhHHHhhcCcccccccCcCc-----------cHHHHHHHHHHHHhC-CCC
Q psy5297 65 IGCFVPCDSATIS----------------VVDQIFTRVGAADSQYRGIST-----------FMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 65 ~g~~v~~~~~~~~----------------~~~~~l~~~~l~~~~~~~~~~-----------lS~g~~q~~~ia~~l-~~p 116 (185)
++ |+||++..++ .+.++++.+++.+..++.+.. ||+||+||+++||++ .+|
T Consensus 79 i~-~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FG-VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EE-EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 55 9999874332 123455677777777776765 999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++||||||+++|+.....+.+.+ ..+. .++|||++||+.+....|||+++|++|+++..+++++
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l-~~~~--~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~ 222 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTL-KQAF--ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQK 222 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHH-HHhc--CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHH
Confidence 999999997777666655555544 4332 4799999999944444599999999999999988765
No 207
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-36 Score=242.89 Aligned_cols=171 Identities=16% Similarity=0.176 Sum_probs=126.7
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH------H----------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV------F---------------- 61 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~------~---------------- 61 (185)
.+++++++..| +.+.+++|+||++++|++++|+|+||||||||+|+| |... .
T Consensus 24 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 24 VFDTQNLNLWY-----GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred EEEEeeeEEEE-----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 34555554322 235699999999999999999999999999999999 4321 0
Q ss_pred -----HHhhCceecCCCCCc--chhhHH----------------------Hhhc----CcccccccCcCccHHHHHHHHH
Q psy5297 62 -----LAQIGCFVPCDSATI--SVVDQI----------------------FTRV----GAADSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 62 -----~~~~g~~v~~~~~~~--~~~~~~----------------------l~~~----~l~~~~~~~~~~lS~g~~q~~~ 108 (185)
...++ |+||++..+ ++.+++ ++.+ ++.+..++++.+||+||+||++
T Consensus 99 ~~~~~~~~i~-~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~ 177 (271)
T PRK14238 99 SVEELRTNVG-MVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLC 177 (271)
T ss_pred cHHHHhhhEE-EEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHH
Confidence 12244 888886322 222221 1222 2233457788999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||+++ .+|+++||||||+|+|+.....+.+.+ ..+++ +.|+|++||+ .++.++||++++|++|+++..+++++
T Consensus 178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 252 (271)
T PRK14238 178 IARCLAIEPDVILMDEPTSALDPISTLKVEELV-QELKK--DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDK 252 (271)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH-HHHHc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999 999999999997777666655555544 56654 6899999999 77788999999999999998877543
No 208
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6.2e-36 Score=262.17 Aligned_cols=171 Identities=15% Similarity=0.166 Sum_probs=132.3
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------H--------------
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------F-------------- 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------~-------------- 61 (185)
++++++...| +++.+++|+||++++|++++|+||||||||||+|+| |... +
T Consensus 2 l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (500)
T TIGR02633 2 LEMKGIVKTF-----GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76 (500)
T ss_pred EEEEeEEEEe-----CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 5566665444 235799999999999999999999999999999999 3221 1
Q ss_pred HHhhCceecCCCCC---cc-------------------------hhhHHHhhcCccccc-ccCcCccHHHHHHHHHHHHh
Q psy5297 62 LAQIGCFVPCDSAT---IS-------------------------VVDQIFTRVGAADSQ-YRGISTFMMEMKETATVIKK 112 (185)
Q Consensus 62 ~~~~g~~v~~~~~~---~~-------------------------~~~~~l~~~~l~~~~-~~~~~~lS~g~~q~~~ia~~ 112 (185)
...++ |+||++.. ++ .+.++++.+++.+.. ++++++||+|||||++||++
T Consensus 77 ~~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~a 155 (500)
T TIGR02633 77 RAGIV-IIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKA 155 (500)
T ss_pred hCCEE-EEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHH
Confidence 11245 88887521 11 123456667776554 57799999999999999999
Q ss_pred C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+ .+|+++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~l~~-~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 156 LNKQARLLILDEPSSSLTEKETEILLDII-RDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 9 999999999997777766655555544 66665 58999999999 78889999999999999988876653
No 209
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-36 Score=263.04 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=126.5
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCCC---CC---
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCDS---AT--- 75 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~~---~~--- 75 (185)
.+++|+||++++|++++|+||||||||||+|+| |.|.+ ...++ |+||++ ..
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~~ 355 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA-YITESRRDNGFFPN 355 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE-EccCccccCCCcCC
Confidence 389999999999999999999999999999999 33322 12345 899862 01
Q ss_pred cc------------------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeC
Q psy5297 76 IS------------------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDE 123 (185)
Q Consensus 76 ~~------------------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDE 123 (185)
++ .++++++.+++. +..++++++||+|||||++||+++ .+|+++||||
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE 435 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE 435 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence 11 123566778886 678999999999999999999999 9999999999
Q ss_pred CCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEecc
Q psy5297 124 LGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYH 182 (185)
Q Consensus 124 P~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~ 182 (185)
||+|+|+.....+.+.+ +.+++ .|.|||++||| .++..+||++++|++|++...++.
T Consensus 436 Pt~~LD~~~~~~l~~~l-~~l~~-~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 436 PTRGIDVGAKAEIYKVM-RQLAD-DGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred CCCCcCHHHHHHHHHHH-HHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 97777776666555544 66665 58999999999 788899999999999999887754
No 210
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=9.1e-36 Score=235.74 Aligned_cols=168 Identities=17% Similarity=0.172 Sum_probs=128.2
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------H
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------------F 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------------~ 61 (185)
+++++++..+-. ..+.+.+++|+||++++|++++|+||||||||||+++| |.|. +
T Consensus 2 l~~~~l~~~~~~-~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 2 ISIRNLNHYYGH-GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred EEEEEEEEEccC-CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 456666543311 01125799999999999999999999999999999999 3221 1
Q ss_pred HHhhCceecCCCCCc---c----------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 62 LAQIGCFVPCDSATI---S----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 62 ~~~~g~~v~~~~~~~---~----------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
...++ |+||++..+ + .+.++++.+++.+..++++.+||+||+||+++|+++ .+
T Consensus 81 ~~~i~-~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~ 159 (220)
T TIGR02982 81 RRNIG-YIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHR 159 (220)
T ss_pred HhheE-EEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 23455 888876211 1 134566778888888999999999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeE
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHE 176 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i 176 (185)
|+++|||||++|+|......+...+ +.+.++.+.|+|++||+.+..++||++++|++|++
T Consensus 160 p~illlDEP~~~LD~~~~~~l~~~l-~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 160 PKLVLADEPTAALDSKSGRDVVELM-QKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999997776665555455543 55554358999999999657789999999999986
No 211
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.9e-36 Score=261.19 Aligned_cols=180 Identities=17% Similarity=0.120 Sum_probs=143.2
Q ss_pred CceEEEcccCCceeeec------CCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------
Q psy5297 3 TGTLVLNQCRHPIVELQ------GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------- 61 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~------~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------- 61 (185)
++.++++|+...|.... .+...+++||||++.+||+++|+|++|||||||.|+| |.+.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 56778888877665422 1234689999999999999999999999999999999 33322
Q ss_pred --------HHhhCceecCCCC-Cc----c----------------------hhhHHHhhcCccc-ccccCcCccHHHHHH
Q psy5297 62 --------LAQIGCFVPCDSA-TI----S----------------------VVDQIFTRVGAAD-SQYRGISTFMMEMKE 105 (185)
Q Consensus 62 --------~~~~g~~v~~~~~-~~----~----------------------~~~~~l~~~~l~~-~~~~~~~~lS~g~~q 105 (185)
+.++ .++||++. .+ + .+.++++.+++.. ..++++.+|||||||
T Consensus 358 ~~~~~~~~r~~~-QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ 436 (539)
T COG1123 358 TGGELRRLRRRI-QMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436 (539)
T ss_pred ccchhhhhhhhe-EEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence 1222 37788772 11 1 2566788889876 689999999999999
Q ss_pred HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
|++|||++ .+|+++++|||++.+|+.-...+.+++ ..+.++.|.|.+++||| ..+..+|||+.+|++|++++.|+.+
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl-~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~ 515 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLL-KDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTE 515 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHH-HHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHH
Confidence 99999999 999999999996666665555555544 67776689999999999 7788899999999999999999655
Q ss_pred C
Q psy5297 184 N 184 (185)
Q Consensus 184 ~ 184 (185)
+
T Consensus 516 ~ 516 (539)
T COG1123 516 K 516 (539)
T ss_pred H
Confidence 3
No 212
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-36 Score=237.48 Aligned_cols=156 Identities=17% Similarity=0.176 Sum_probs=118.5
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHhhCceecCCCCCc--chh
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQIGCFVPCDSATI--SVV 79 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~~g~~v~~~~~~~--~~~ 79 (185)
.++++|+||++++|++++|+||||||||||+|+| |.+. +...++ |+||++..+ ++.
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~ 93 (234)
T cd03251 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG-LVSQDVFLFNDTVA 93 (234)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE-EeCCCCeeccccHH
Confidence 3699999999999999999999999999999999 3221 123455 888876221 221
Q ss_pred hH------------------------HHhhc--CcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297 80 DQ------------------------IFTRV--GAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD 132 (185)
Q Consensus 80 ~~------------------------~l~~~--~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d 132 (185)
++ +++.+ ++....++++.+||+||+||++||+++ .+|+++|||||++|+|+..
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 173 (234)
T cd03251 94 ENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173 (234)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11 11122 344445677899999999999999999 9999999999977776666
Q ss_pred hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
...+.+.+ ..+. ++.|||++||+ .++.. ||++++|++|++...++++
T Consensus 174 ~~~l~~~l-~~~~--~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~ 221 (234)
T cd03251 174 ERLVQAAL-ERLM--KNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHE 221 (234)
T ss_pred HHHHHHHH-HHhc--CCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHH
Confidence 55555544 5554 37899999999 66654 9999999999998877654
No 213
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=239.57 Aligned_cols=171 Identities=14% Similarity=0.185 Sum_probs=127.5
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------- 60 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------- 60 (185)
+.++++++...+ +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 4 ~~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFY-----GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEE-----CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc
Confidence 456666666544 235799999999999999999999999999999999 4211
Q ss_pred -----HHHhhCceecCCCCCc--chhhH----------------------HHhhcCc----ccccccCcCccHHHHHHHH
Q psy5297 61 -----FLAQIGCFVPCDSATI--SVVDQ----------------------IFTRVGA----ADSQYRGISTFMMEMKETA 107 (185)
Q Consensus 61 -----~~~~~g~~v~~~~~~~--~~~~~----------------------~l~~~~l----~~~~~~~~~~lS~g~~q~~ 107 (185)
+...++ |+||++..+ ++.++ .++.+++ .+..++.+.+||+||+||+
T Consensus 79 ~~~~~~~~~i~-~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv 157 (252)
T PRK14255 79 EDVVQLRKQVG-MVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRV 157 (252)
T ss_pred ccHHHhcCeEE-EEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHH
Confidence 011244 888876322 22111 1223333 2345778899999999999
Q ss_pred HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+||+++ .+|+++|||||++|+|......+.+.+ ..+++ +.|+|++||+ .++.++||++++|++|+++..+++.
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14255 158 CIARVLAVKPDVILLDEPTSALDPISSTQIENML-LELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTK 232 (252)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999 999999999997776666555554543 55554 4799999999 7778899999999999999887653
No 214
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=240.18 Aligned_cols=172 Identities=15% Similarity=0.161 Sum_probs=128.0
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------- 60 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------- 60 (185)
+.++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 9 ~~l~i~~v~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 9 TVLRTENLNVYY-----GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred eEEEEeeeEEEE-----CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 346666665443 235799999999999999999999999999999999 3211
Q ss_pred -----HHHhhCceecCCCCCc--chhh--------------------HHHhhcCcc----cccccCcCccHHHHHHHHHH
Q psy5297 61 -----FLAQIGCFVPCDSATI--SVVD--------------------QIFTRVGAA----DSQYRGISTFMMEMKETATV 109 (185)
Q Consensus 61 -----~~~~~g~~v~~~~~~~--~~~~--------------------~~l~~~~l~----~~~~~~~~~lS~g~~q~~~i 109 (185)
+...++ |+||++..+ ++.+ .+++.+++. +..++++.+||+||+||++|
T Consensus 84 ~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 84 VDPVEVRRRIG-MVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCI 162 (264)
T ss_pred cChHHHhhhEE-EEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHH
Confidence 012344 888875322 2221 123333432 23567888999999999999
Q ss_pred HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccccee---------eeeEEE
Q psy5297 110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFR---------NVHESK 178 (185)
Q Consensus 110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~---------~g~i~~ 178 (185)
||++ .+|+++|||||++|+|+.....+.+.+ ..+.+ +.|||++||+ .++.++||++++|+ +|+++.
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L-~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELM-HELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999 999999999997777666655554443 55654 4799999999 88899999999998 799998
Q ss_pred EeccCC
Q psy5297 179 YLYHTN 184 (185)
Q Consensus 179 ~~~~~~ 184 (185)
.+++++
T Consensus 240 ~~~~~~ 245 (264)
T PRK14243 240 FDRTEK 245 (264)
T ss_pred eCCHHH
Confidence 877644
No 215
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=5.9e-36 Score=262.99 Aligned_cols=167 Identities=14% Similarity=0.150 Sum_probs=133.3
Q ss_pred eeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCC
Q psy5297 15 IVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCD 72 (185)
Q Consensus 15 ~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~ 72 (185)
+++.++-...+++|+||++++|++++|+||||||||||+|+| |.|.+ ...++ |+||+
T Consensus 268 ~l~~~~l~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~-~v~q~ 346 (510)
T PRK15439 268 VLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV-YLPED 346 (510)
T ss_pred eEEEeCCCCCCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcE-ECCCC
Confidence 555555112379999999999999999999999999999999 43322 11244 88886
Q ss_pred CC------Ccc------------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297 73 SA------TIS------------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVI 120 (185)
Q Consensus 73 ~~------~~~------------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll 120 (185)
+. .++ .++++++.+++. +..++++++||+|||||++||+++ .+|++||
T Consensus 347 ~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLl 426 (510)
T PRK15439 347 RQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLI 426 (510)
T ss_pred hhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEE
Confidence 20 011 123456778886 678999999999999999999999 9999999
Q ss_pred EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|||||+|+|+.....+.+.+ ..+++ .|.|||++||| .++.++||++++|++|+++..+++++
T Consensus 427 LDEPt~gLD~~~~~~l~~~l-~~l~~-~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 427 VDEPTRGVDVSARNDIYQLI-RSIAA-QNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred ECCCCcCcChhHHHHHHHHH-HHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99998888777766666644 66766 58999999999 88889999999999999999988765
No 216
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=238.63 Aligned_cols=171 Identities=15% Similarity=0.112 Sum_probs=128.9
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------- 60 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------- 60 (185)
+.+++++++..+ +++.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 5 ~~i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 79 (253)
T PRK14261 5 IILSTKNLNLWY-----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79 (253)
T ss_pred ceEEEeeeEEEE-----CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc
Confidence 456666665433 236799999999999999999999999999999999 3210
Q ss_pred -----HHHhhCceecCCCCCc--ch----------------------hhHHHhhcCcc----cccccCcCccHHHHHHHH
Q psy5297 61 -----FLAQIGCFVPCDSATI--SV----------------------VDQIFTRVGAA----DSQYRGISTFMMEMKETA 107 (185)
Q Consensus 61 -----~~~~~g~~v~~~~~~~--~~----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~~ 107 (185)
+...++ |+||++..+ ++ +.++++.+++. +..++++.+||+||+||+
T Consensus 80 ~~~~~~~~~i~-~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14261 80 ADVVALRRKIG-MVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRL 158 (253)
T ss_pred cchhhhhceEE-EEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHH
Confidence 011234 888876322 11 12233444442 235788899999999999
Q ss_pred HHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 108 TVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 108 ~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+||+++ .+|+++|||||++|+|+.....+.+.+ ..+++ +.|+|++||+ .++.++||++++|++|+++..++++
T Consensus 159 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l-~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14261 159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLI-EDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTT 233 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHH
Confidence 999999 999999999997777766655555544 55654 5899999999 7788899999999999999887754
No 217
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=240.90 Aligned_cols=157 Identities=15% Similarity=0.141 Sum_probs=121.3
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------------HHHhhCceecCCCC
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------------FLAQIGCFVPCDSA 74 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------------~~~~~g~~v~~~~~ 74 (185)
+.+++|+||++++|++++|+||||||||||+|+| |... +...++ |+||+..
T Consensus 38 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~-~v~q~~~ 116 (272)
T PRK14236 38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVG-MVFQRPN 116 (272)
T ss_pred eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEE-EEecCCc
Confidence 5799999999999999999999999999999999 4321 112334 8888753
Q ss_pred Cc--chh----------------------hHHHhhcCcc----cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297 75 TI--SVV----------------------DQIFTRVGAA----DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG 125 (185)
Q Consensus 75 ~~--~~~----------------------~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~ 125 (185)
.+ ++. .++++.+++. +..++.+.+||+||+||++|||++ .+|+++||||||
T Consensus 117 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 196 (272)
T PRK14236 117 PFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT 196 (272)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 22 221 2233444543 235678899999999999999999 999999999997
Q ss_pred CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+|+|+.....+.+.+ ..+++ +.|+|++||+ .++.++||++++|++|+++..++++
T Consensus 197 ~gLD~~~~~~l~~~L-~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 197 SALDPISTLKIEELI-TELKS--KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred ccCCHHHHHHHHHHH-HHHHh--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 777666555554443 55554 6899999999 7788999999999999999887654
No 218
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.8e-36 Score=256.61 Aligned_cols=173 Identities=15% Similarity=0.166 Sum_probs=138.1
Q ss_pred CCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-----------
Q psy5297 2 GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL----------- 62 (185)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~----------- 62 (185)
+.+.+++++..+.| +...+|+++||++.+||+++|+|.||||||||+|+| |.|.+.
T Consensus 5 ~~~ll~~~~i~K~F-----ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~ 79 (500)
T COG1129 5 TPPLLELRGISKSF-----GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRD 79 (500)
T ss_pred ccceeeeecceEEc-----CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHH
Confidence 34567777777666 335799999999999999999999999999999999 444331
Q ss_pred -HhhC-ceecCCC---CCcch-------------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297 63 -AQIG-CFVPCDS---ATISV-------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK 112 (185)
Q Consensus 63 -~~~g-~~v~~~~---~~~~~-------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~ 112 (185)
...| ..|+|+. +.+++ +.++++.+++....+.++++||.||||.++|||+
T Consensus 80 A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArA 159 (500)
T COG1129 80 ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARA 159 (500)
T ss_pred HHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHH
Confidence 1112 2677765 22333 3455666776444889999999999999999999
Q ss_pred C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297 113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY 181 (185)
Q Consensus 113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~ 181 (185)
+ .+++++||||||+.++..+.+.+... ++.+++ +|.++|++||. +|+.++|||+.+|+||+.+...+
T Consensus 160 l~~~arllIlDEPTaaLt~~E~~~Lf~~-ir~Lk~-~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 160 LSFDARVLILDEPTAALTVKETERLFDL-IRRLKA-QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHh-CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9 99999999999777776666666554 488887 79999999998 99999999999999999998877
No 219
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1e-35 Score=239.63 Aligned_cols=174 Identities=18% Similarity=0.213 Sum_probs=129.7
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH---------HHH-----------
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV---------SVF----------- 61 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~---------i~~----------- 61 (185)
++.++++++...+ +++.+++|+||++++|++++|+||||||||||+|+| |. +.+
T Consensus 5 ~~~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T CHL00131 5 KPILEIKNLHASV-----NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE 79 (252)
T ss_pred CceEEEEeEEEEe-----CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChh
Confidence 3457777776544 235799999999999999999999999999999999 32 111
Q ss_pred -HHhh-CceecCCCCCcc-------------------------------hhhHHHhhcCcc-cccccCcC-ccHHHHHHH
Q psy5297 62 -LAQI-GCFVPCDSATIS-------------------------------VVDQIFTRVGAA-DSQYRGIS-TFMMEMKET 106 (185)
Q Consensus 62 -~~~~-g~~v~~~~~~~~-------------------------------~~~~~l~~~~l~-~~~~~~~~-~lS~g~~q~ 106 (185)
..+. ..|+||.+..++ .+.++++.+++. ...++.+. .||+||+||
T Consensus 80 ~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr 159 (252)
T CHL00131 80 ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKR 159 (252)
T ss_pred hhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHH
Confidence 0111 126777642111 123456667776 35677776 599999999
Q ss_pred HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHh-hccccceeeeeEEEEeccC
Q psy5297 107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALL-SRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~-~d~~~~l~~g~i~~~~~~~ 183 (185)
++||+++ .+|+++||||||+|+|......+.+.+ ..+++ .+.|||++||+ ..+..+ ||++++|++|+++..++++
T Consensus 160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGI-NKLMT-SENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHh-CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 9999999 999999999997777666655555544 55655 58999999999 666666 8999999999999888765
No 220
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-36 Score=236.83 Aligned_cols=170 Identities=15% Similarity=0.146 Sum_probs=124.4
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~ 63 (185)
.+++++++..+- +.+.+++|+||++++|++++|+||||||||||||+| |.|.+ ..
T Consensus 2 ~l~~~~l~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (229)
T cd03254 2 EIEFENVNFSYD----EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS 77 (229)
T ss_pred eEEEEEEEEecC----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhh
Confidence 356667665441 124699999999999999999999999999999999 33311 23
Q ss_pred hhCceecCCCCCc--ch---------------hhHHHhhcCc-----------ccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 64 QIGCFVPCDSATI--SV---------------VDQIFTRVGA-----------ADSQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 64 ~~g~~v~~~~~~~--~~---------------~~~~l~~~~l-----------~~~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
.++ |+||++..+ ++ +...++.+++ ....++.+.+||+|||||++||+++ .
T Consensus 78 ~i~-~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~ 156 (229)
T cd03254 78 MIG-VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR 156 (229)
T ss_pred hEE-EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 355 999876322 11 1122222232 2334556789999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+|+++|||||++|+|+.....+...+ ..++ .+.|||++||+ .++ ..||++++|++|++...++.+
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~l-~~~~--~~~tii~~sh~~~~~-~~~d~i~~l~~g~~~~~~~~~ 222 (229)
T cd03254 157 DPKILILDEATSNIDTETEKLIQEAL-EKLM--KGRTSIIIAHRLSTI-KNADKILVLDDGKIIEEGTHD 222 (229)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHH-HHhc--CCCEEEEEecCHHHH-hhCCEEEEEeCCeEEEeCCHH
Confidence 99999999997777666655555544 5554 38899999999 555 569999999999998876654
No 221
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-35 Score=238.79 Aligned_cols=173 Identities=13% Similarity=0.190 Sum_probs=127.9
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------- 60 (185)
.+++++++..+ +...+++|+||++++|++++|+||||||||||+++| |...
T Consensus 7 ~l~~~nl~~~~-----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 7 AIKVNNLSFYY-----DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred eEEEeeEEEEe-----CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 45666665444 224699999999999999999999999999999999 2110
Q ss_pred ----HHHhhCceecCCCCC--cchh----------------------hHHHhhcCcc----cccccCcCccHHHHHHHHH
Q psy5297 61 ----FLAQIGCFVPCDSAT--ISVV----------------------DQIFTRVGAA----DSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 61 ----~~~~~g~~v~~~~~~--~~~~----------------------~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~ 108 (185)
+...++ |+||++.. .++. .++++.+++. +..++++.+||+||+||++
T Consensus 82 ~~~~~~~~i~-~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 160 (261)
T PRK14258 82 NLNRLRRQVS-MVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLC 160 (261)
T ss_pred chHHhhccEE-EEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHH
Confidence 011234 78877522 2221 1233445542 2457888999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceee-----eeEEEEec
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRN-----VHESKYLY 181 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~-----g~i~~~~~ 181 (185)
||+++ .+|+++||||||+|+|......+.+.+ ..++++.+.|+|++||+ .++.++||++++|++ |+++..++
T Consensus 161 laral~~~p~vllLDEP~~~LD~~~~~~l~~~l-~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 239 (261)
T PRK14258 161 IARALAVKPKVLLMDEPCFGLDPIASMKVESLI-QSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGL 239 (261)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCC
Confidence 99999 999999999996666655544444433 55543358999999999 788899999999999 99998887
Q ss_pred cCC
Q psy5297 182 HTN 184 (185)
Q Consensus 182 ~~~ 184 (185)
+++
T Consensus 240 ~~~ 242 (261)
T PRK14258 240 TKK 242 (261)
T ss_pred HHH
Confidence 654
No 222
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.8e-36 Score=235.70 Aligned_cols=162 Identities=14% Similarity=0.046 Sum_probs=124.5
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------HHhh
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------LAQI 65 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------~~~~ 65 (185)
+.++++++...+ +++.+++++||++++|++++|+||||||||||+|+| |.+.+ ...+
T Consensus 10 ~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i 84 (214)
T PRK13543 10 PLLAAHALAFSR-----NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFM 84 (214)
T ss_pred ceEEEeeEEEec-----CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhce
Confidence 345666665433 235699999999999999999999999999999999 43322 1224
Q ss_pred CceecCCCCCc---ch------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeC
Q psy5297 66 GCFVPCDSATI---SV------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDE 123 (185)
Q Consensus 66 g~~v~~~~~~~---~~------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDE 123 (185)
+ |++|.+..+ ++ +.++++.+++.+..++++.+||+|||||+++|+++ .+|+++||||
T Consensus 85 ~-~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (214)
T PRK13543 85 A-YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE 163 (214)
T ss_pred E-EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 5 888875221 21 23456677888778999999999999999999999 9999999999
Q ss_pred CCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceee
Q psy5297 124 LGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRN 173 (185)
Q Consensus 124 P~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~ 173 (185)
|++++|+.....+.+. +..+++ .+.|+|++||+ .++.++||++++++.
T Consensus 164 Pt~~LD~~~~~~l~~~-l~~~~~-~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 164 PYANLDLEGITLVNRM-ISAHLR-GGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CcccCCHHHHHHHHHH-HHHHHh-CCCEEEEEecChhhhhhhcceEEEEee
Confidence 9777666555544443 355555 58899999999 888899999988763
No 223
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=239.53 Aligned_cols=160 Identities=17% Similarity=0.198 Sum_probs=124.2
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------------HHhhCceecCCC
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------------LAQIGCFVPCDS 73 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------------~~~~g~~v~~~~ 73 (185)
+.+.+++|+||++++|++++|+||||||||||+++| |.+.+ ...++ |+||++
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~-~~~q~~ 99 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVG-MVFQQP 99 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceE-EEccCC
Confidence 346799999999999999999999999999999999 32211 12344 888876
Q ss_pred CCc---ch----------------------hhHHHhhcCcc----cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeC
Q psy5297 74 ATI---SV----------------------VDQIFTRVGAA----DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDE 123 (185)
Q Consensus 74 ~~~---~~----------------------~~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDE 123 (185)
..+ ++ +.++++.+++. +..++.+..||+|||||++|||++ .+|+++||||
T Consensus 100 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDE 179 (257)
T PRK14246 100 NPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDE 179 (257)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 322 21 12334556664 345778899999999999999999 9999999999
Q ss_pred CCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 124 LGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 124 P~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||+|+|......+.+.+ ..+++ +.|+|++||+ .++..+||++++|++|++...++.++
T Consensus 180 Pt~~LD~~~~~~l~~~l-~~~~~--~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 180 PTSMIDIVNSQAIEKLI-TELKN--EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred CCccCCHHHHHHHHHHH-HHHhc--CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 97777666655555544 55543 5899999999 67779999999999999998886543
No 224
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.6e-35 Score=234.14 Aligned_cols=169 Identities=15% Similarity=0.162 Sum_probs=124.9
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~ 63 (185)
.++++++...+- ++.+++++|+||++++|++++|+||||||||||+|+| |.|. +..
T Consensus 2 ~l~~~~l~~~~~---~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (221)
T cd03244 2 DIEFKNVSLRYR---PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS 78 (221)
T ss_pred cEEEEEEEEecC---CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhh
Confidence 356666654442 2235799999999999999999999999999999999 3221 123
Q ss_pred hhCceecCCCCCcc--h--------------hhHHHhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 64 QIGCFVPCDSATIS--V--------------VDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 64 ~~g~~v~~~~~~~~--~--------------~~~~l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
.++ |+||++..++ + +.++++.+++.+.. ++++.+||+||+||++|||++ .+
T Consensus 79 ~i~-~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 79 RIS-IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred hEE-EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 455 8998863221 1 22233445554433 468899999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY 181 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~ 181 (185)
|+++|||||++|+|+.....+.+.+ +.+.+ +.|+|++||+ .++. .||++++|++|++...++
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l-~~~~~--~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTI-REAFK--DCTVLTIAHRLDTII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHH-HHhcC--CCEEEEEeCCHHHHh-hCCEEEEEECCeEEecCC
Confidence 9999999997777666555554433 45543 6899999999 5554 599999999999987764
No 225
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-35 Score=238.44 Aligned_cols=171 Identities=15% Similarity=0.172 Sum_probs=128.4
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------- 60 (185)
.+++++++..| +.+.+++|+||++++|++++|+|+||||||||+|+| |...
T Consensus 7 ~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 7 AIKVKDLSFYY-----NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred eEEEEEEEEEE-----CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 45666665444 235699999999999999999999999999999999 4211
Q ss_pred ----HHHhhCceecCCCCCc--ch----------------------hhHHHhhcCc----ccccccCcCccHHHHHHHHH
Q psy5297 61 ----FLAQIGCFVPCDSATI--SV----------------------VDQIFTRVGA----ADSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 61 ----~~~~~g~~v~~~~~~~--~~----------------------~~~~l~~~~l----~~~~~~~~~~lS~g~~q~~~ 108 (185)
+...++ |+||++..+ ++ +.++++.+++ .+..++.+.+||+||+||++
T Consensus 82 ~~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 160 (259)
T PRK14260 82 NINRLRRQIG-MVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLC 160 (259)
T ss_pred chHhhhhheE-EEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHH
Confidence 112344 888876321 21 1233344555 23567888999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccccee-----eeeEEEEec
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFR-----NVHESKYLY 181 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~-----~g~i~~~~~ 181 (185)
||+++ .+|+++||||||+|+|+.....+.+.+ ..+++ +.|||++||+ .++.++||++++|+ +|+++..++
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 161 IARALAIKPKVLLMDEPCSALDPIATMKVEELI-HSLRS--ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237 (259)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc--CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCC
Confidence 99999 999999999997776665555444433 55543 5899999999 88889999999998 599998887
Q ss_pred cCC
Q psy5297 182 HTN 184 (185)
Q Consensus 182 ~~~ 184 (185)
+++
T Consensus 238 ~~~ 240 (259)
T PRK14260 238 TTQ 240 (259)
T ss_pred HHH
Confidence 653
No 226
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.4e-35 Score=235.47 Aligned_cols=155 Identities=15% Similarity=0.202 Sum_probs=122.9
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---H-----------------HHhhCceecCCCCCc---ch
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---F-----------------LAQIGCFVPCDSATI---SV 78 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---~-----------------~~~~g~~v~~~~~~~---~~ 78 (185)
+.+++|+||++++|++++|+||||||||||+|+| |... . ...++ |+||++..+ ++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~-~~~q~~~~~~~~tv 98 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVA-YVRQDDILLPGLTV 98 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEE-EeCCCCccCcCCcH
Confidence 6799999999999999999999999999999999 4322 1 12344 888876222 21
Q ss_pred h------------------------hH-HHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297 79 V------------------------DQ-IFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD 132 (185)
Q Consensus 79 ~------------------------~~-~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d 132 (185)
. .. +++.+++.+..++.+++||+||+||+++|+++ .+|+++|||||++|+|+..
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~ 178 (226)
T cd03234 99 RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT 178 (226)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHH
Confidence 1 12 45555666667788999999999999999999 9999999999988877766
Q ss_pred hhHHHHHHHHHHHhcCCCeEEEecCh-h-HHHHhhccccceeeeeEEEEe
Q psy5297 133 GFGMACSIARELASNRQPFTLFATHF-H-EIALLSRVIPTFRNVHESKYL 180 (185)
Q Consensus 133 ~~~~~~~il~~l~~~~~~~vii~tH~-~-~~~~~~d~~~~l~~g~i~~~~ 180 (185)
...+.+.+ ..+.+ .+.|+|++||+ . ++.++||++++|++|++++.|
T Consensus 179 ~~~~~~~l-~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 179 ALNLVSTL-SQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHH-HHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 66555544 55655 48899999998 3 789999999999999997653
No 227
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.4e-35 Score=236.89 Aligned_cols=170 Identities=17% Similarity=0.163 Sum_probs=124.4
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH---------HH-------------H
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS---------VF-------------L 62 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i---------~~-------------~ 62 (185)
++++++...+ +++.+++|+||++++|++++|+||||||||||+|+| |.. .+ .
T Consensus 2 i~~~nl~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (248)
T PRK09580 2 LSIKDLHVSV-----EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRA 76 (248)
T ss_pred eEEEEEEEEe-----CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHh
Confidence 4566665443 235799999999999999999999999999999999 431 11 0
Q ss_pred -HhhCceecCCCCCcc-------------------------------hhhHHHhhcCcc-cccccCcC-ccHHHHHHHHH
Q psy5297 63 -AQIGCFVPCDSATIS-------------------------------VVDQIFTRVGAA-DSQYRGIS-TFMMEMKETAT 108 (185)
Q Consensus 63 -~~~g~~v~~~~~~~~-------------------------------~~~~~l~~~~l~-~~~~~~~~-~lS~g~~q~~~ 108 (185)
..++ |++|++..++ .++++++.+++. +..++.+. +||+|||||++
T Consensus 77 ~~~i~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~ 155 (248)
T PRK09580 77 GEGIF-MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND 155 (248)
T ss_pred hcceE-EEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHH
Confidence 1244 7787752111 112233444553 34455564 79999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHh-hccccceeeeeEEEEeccC
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALL-SRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~-~d~~~~l~~g~i~~~~~~~ 183 (185)
||+++ .+|+++||||||+|+|......+.+. ++.+++ .+.|||++||+ ..+... ||++++|++|+++..++++
T Consensus 156 laral~~~p~illLDEPt~~LD~~~~~~l~~~-l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 156 ILQMAVLEPELCILDESDSGLDIDALKIVADG-VNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHh-CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 99999 99999999999777666555555443 356665 58999999999 666666 8999999999998887654
No 228
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.5e-35 Score=259.67 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=127.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-H--------HHHH--------------HHhhCceecCCCC---Cc
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-G--------VSVF--------------LAQIGCFVPCDSA---TI 76 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G--------~i~~--------------~~~~g~~v~~~~~---~~ 76 (185)
+.+++|+||++++|++++|+||||||||||+|+| | .|.+ ..+++ |+||+.. .+
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~l~ 351 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIA-MVPEDRKRHGIV 351 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCE-EcCcchhhCCcC
Confidence 4699999999999999999999999999999999 2 2221 12345 8888731 00
Q ss_pred ---c--------------------------hhhHHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297 77 ---S--------------------------VVDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG 125 (185)
Q Consensus 77 ---~--------------------------~~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~ 125 (185)
+ .+.++++.+++.+ ..++++.+||+|||||++||+++ .+|+++||||||
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt 431 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT 431 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 0 1345667788864 57899999999999999999999 999999999997
Q ss_pred CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+|+.....+.+.+ ..+++ .|.|||++||| .++.++||++++|++|++....+.++
T Consensus 432 ~~LD~~~~~~l~~~l-~~l~~-~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 432 RGVDVGAKYEIYKLI-NQLAQ-EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred CCcCHhHHHHHHHHH-HHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 777776655555544 67766 58999999999 88889999999999999998776543
No 229
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=260.64 Aligned_cols=167 Identities=15% Similarity=0.127 Sum_probs=132.7
Q ss_pred eeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCC
Q psy5297 15 IVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCD 72 (185)
Q Consensus 15 ~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~ 72 (185)
.++.++-...+++|+||++++|++++|+||||||||||+|+| |.|.+ ..+++ |+||+
T Consensus 257 ~l~~~~l~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~-~v~q~ 335 (501)
T PRK10762 257 RLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV-YISED 335 (501)
T ss_pred EEEEeCcccCCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE-EecCc
Confidence 455544223479999999999999999999999999999999 33322 12355 99987
Q ss_pred CC------Ccc---------------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297 73 SA------TIS---------------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENS 117 (185)
Q Consensus 73 ~~------~~~---------------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ 117 (185)
+. .++ .++++++.+++. +..++++.+||+|||||++||+++ .+|+
T Consensus 336 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~ 415 (501)
T PRK10762 336 RKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPK 415 (501)
T ss_pred cccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 41 111 123456777884 578999999999999999999999 9999
Q ss_pred EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
++||||||+|+|+.....+.+.+ +.+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus 416 lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 416 VLILDEPTRGVDVGAKKEIYQLI-NQFKA-EGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred EEEEcCCCCCCCHhHHHHHHHHH-HHHHH-CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999998887777766666644 66665 48999999999 88889999999999999998887665
No 230
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=260.58 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=128.6
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--------------HhhCceecCCCC---C--
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--------------AQIGCFVPCDSA---T-- 75 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--------------~~~g~~v~~~~~---~-- 75 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.|.+. ..++ |+||++. .
T Consensus 266 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~~ 344 (501)
T PRK11288 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM-LCPEDRKAEGIIP 344 (501)
T ss_pred CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE-EcCcCHhhCCCcC
Confidence 3589999999999999999999999999999999 444321 1234 8888631 1
Q ss_pred -cc---------------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297 76 -IS---------------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG 125 (185)
Q Consensus 76 -~~---------------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~ 125 (185)
.+ .+.++++.+++. +..++++.+||+|||||++||+++ .+|++|||||||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt 424 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPT 424 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCC
Confidence 11 123456677884 678999999999999999999999 999999999997
Q ss_pred CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+|+.....+.+.+ ..+++ .|.|||++||| .++.++||++++|++|+++..++.++
T Consensus 425 ~~LD~~~~~~l~~~l-~~l~~-~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 425 RGIDVGAKHEIYNVI-YELAA-QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred CCCCHhHHHHHHHHH-HHHHh-CCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 777776666565544 66766 58999999999 88889999999999999999987765
No 231
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-35 Score=235.81 Aligned_cols=170 Identities=14% Similarity=0.164 Sum_probs=128.5
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH------------------------
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV------------------------ 60 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~------------------------ 60 (185)
++++++...| +++.+++|+||++++|++++|+||||||||||+|+| |...
T Consensus 4 l~~~~v~~~~-----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 78 (250)
T PRK14266 4 IEVENLNTYF-----DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78 (250)
T ss_pred EEEEeEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccccc
Confidence 5666665444 235799999999999999999999999999999999 3221
Q ss_pred ---HHHhhCceecCCCCCc--chh----------------------hHHHhhcCcc----cccccCcCccHHHHHHHHHH
Q psy5297 61 ---FLAQIGCFVPCDSATI--SVV----------------------DQIFTRVGAA----DSQYRGISTFMMEMKETATV 109 (185)
Q Consensus 61 ---~~~~~g~~v~~~~~~~--~~~----------------------~~~l~~~~l~----~~~~~~~~~lS~g~~q~~~i 109 (185)
+...++ |+||++..+ ++. .++++.+++. +..++++.+||+||+||++|
T Consensus 79 ~~~~~~~i~-~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 157 (250)
T PRK14266 79 VVELRKKVG-MVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCI 157 (250)
T ss_pred HHHHhhheE-EEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHH
Confidence 012345 899886322 111 1223444542 23577889999999999999
Q ss_pred HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++ .+|+++|||||++|+|+.....+.+.+ ..+++ +.|+|++||+ .++..+||++++|++|++...+++++
T Consensus 158 aral~~~p~llllDEP~~gLD~~~~~~l~~~l-~~~~~--~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14266 158 ARTIAVSPEVILMDEPCSALDPISTTKIEDLI-HKLKE--DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQ 231 (250)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc--CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHH
Confidence 9999 999999999997777766555554544 55543 7899999999 88899999999999999998887643
No 232
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.3e-35 Score=225.29 Aligned_cols=139 Identities=20% Similarity=0.187 Sum_probs=109.6
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceecCCCC------C
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVPCDSA------T 75 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~~~~~------~ 75 (185)
++++++||++++|++++|+||||||||||+|+| |.+.+ ...++ |+||++. .
T Consensus 14 ~~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~~~ 92 (182)
T cd03215 14 GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA-YVPEDRKREGLVLD 92 (182)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE-EecCCcccCcccCC
Confidence 389999999999999999999999999999999 43321 22345 8888731 2
Q ss_pred cchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEE
Q psy5297 76 ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLF 154 (185)
Q Consensus 76 ~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii 154 (185)
.++.+++.... .||+||+||++||+++ .+|+++|||||++|+|+.....+.+.+ ..+++ .+.|+|+
T Consensus 93 ~t~~e~l~~~~-----------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~-~~~tiii 159 (182)
T cd03215 93 LSVAENIALSS-----------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLI-RELAD-AGKAVLL 159 (182)
T ss_pred CcHHHHHHHHh-----------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHH-HHHHH-CCCEEEE
Confidence 33444432110 1999999999999999 999999999997777776666555544 56655 4899999
Q ss_pred ecCh-hHHHHhhccccceeeeeE
Q psy5297 155 ATHF-HEIALLSRVIPTFRNVHE 176 (185)
Q Consensus 155 ~tH~-~~~~~~~d~~~~l~~g~i 176 (185)
+||+ .++.++||++++|++|++
T Consensus 160 ~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 160 ISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred EeCCHHHHHHhCCEEEEecCCcC
Confidence 9999 788999999999999874
No 233
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.8e-34 Score=226.21 Aligned_cols=157 Identities=43% Similarity=0.798 Sum_probs=141.0
Q ss_pred EcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcC
Q psy5297 8 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVG 87 (185)
Q Consensus 8 ~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~ 87 (185)
+++++||+++.. .++++++|++|++++|++++|+||||+||||++|+++.+.+++++|+|+|+....++++++++..++
T Consensus 2 i~~~~hpll~~~-~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~ 80 (204)
T cd03282 2 IRDSRHPILDRD-KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLS 80 (204)
T ss_pred cccccCCeEecc-CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecC
Confidence 578999999863 3568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhc
Q psy5297 88 AADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSR 166 (185)
Q Consensus 88 l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d 166 (185)
..+...+..++||.|++|+..+.+.+.+|+++|+|||++||++.|+..+.+.+++.+.+ .+.++|++||+.++.+.+.
T Consensus 81 ~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 81 NDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFRDIAAILG 158 (204)
T ss_pred CccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHHHHhh
Confidence 98889999999999999987776656899999999999999999999888877788887 5999999999966555443
No 234
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-35 Score=225.81 Aligned_cols=136 Identities=21% Similarity=0.278 Sum_probs=108.3
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHhhCceecCCCCCc---chh
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQIGCFVPCDSATI---SVV 79 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~~g~~v~~~~~~~---~~~ 79 (185)
+.+++++||++++|++++|+||||||||||+|+| |.+.+ ...++ |+||++..+ ++.
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~ 91 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIG-YLPEEPSLYENLTVR 91 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEE-EEecCCccccCCcHH
Confidence 4699999999999999999999999999999999 32211 22344 888876322 333
Q ss_pred hHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 80 DQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 80 ~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
+++. ||+||+||++||+++ .+|+++|||||++|+|+.....+.+.+ +.+++ .|.|+|++||+
T Consensus 92 ~~~~---------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tiii~th~ 154 (173)
T cd03230 92 ENLK---------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL-RELKK-EGKTILLSSHI 154 (173)
T ss_pred HHhh---------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHH-CCCEEEEECCC
Confidence 3321 999999999999999 999999999997777666655555544 66665 48999999999
Q ss_pred -hHHHHhhccccceeeeeE
Q psy5297 159 -HEIALLSRVIPTFRNVHE 176 (185)
Q Consensus 159 -~~~~~~~d~~~~l~~g~i 176 (185)
.++..+||++++|++|++
T Consensus 155 ~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 155 LEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHhCCEEEEEeCCCC
Confidence 777789999999999874
No 235
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.2e-35 Score=235.91 Aligned_cols=156 Identities=14% Similarity=0.127 Sum_probs=117.1
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhCceecCCCCCc--chh
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIGCFVPCDSATI--SVV 79 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g~~v~~~~~~~--~~~ 79 (185)
+++++|+||++++|++++|+||||||||||+++| |.+.+ ...++ |+||++..+ ++.
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~ 94 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG-LVSQEPVLFDGTIA 94 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE-EECCchhhhhhhHH
Confidence 4699999999999999999999999999999999 32211 23355 899876221 221
Q ss_pred hH---------------HHhhc-----------CcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297 80 DQ---------------IFTRV-----------GAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD 132 (185)
Q Consensus 80 ~~---------------~l~~~-----------~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d 132 (185)
++ .++.. ++....++++.+||+||+||++||+++ .+|+++|||||++|+|+..
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~ 174 (238)
T cd03249 95 ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174 (238)
T ss_pred HHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11 11111 223345667889999999999999999 9999999999977766666
Q ss_pred hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
...+.+.+ ..++ .+.++|++||+ .++. .||++++|++|++++.++.+
T Consensus 175 ~~~l~~~l-~~~~--~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~ 222 (238)
T cd03249 175 EKLVQEAL-DRAM--KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHD 222 (238)
T ss_pred HHHHHHHH-HHhc--CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHH
Confidence 55554543 4444 48999999999 5554 89999999999998877653
No 236
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4e-35 Score=222.44 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=104.5
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCC-C-CCcchhhHHHhhcCcccccccCcCccH
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCD-S-ATISVVDQIFTRVGAADSQYRGISTFM 100 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~-~-~~~~~~~~~l~~~~l~~~~~~~~~~lS 100 (185)
+++++++||++++|++++|+||||||||||+|+|.... ....|...... . ...+..+..-..++. +.+||
T Consensus 13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~~~i~~-------~~qLS 84 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDGKEVSFASPRDARRAGIAM-------VYQLS 84 (163)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCcCCHHHHHhcCeEE-------EEecC
Confidence 57999999999999999999999999999999993221 11122111111 0 111111111111111 12399
Q ss_pred HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297 101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK 178 (185)
Q Consensus 101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~ 178 (185)
+||+||+++|+++ .+|+++|||||++|+|......+...+ +.+++ .+.|+|++||+ .++.++||++++|++|++++
T Consensus 85 ~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l-~~~~~-~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 85 VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVI-RRLRA-QGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999 999999999997776665555554543 56655 48999999999 67889999999999999864
No 237
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-36 Score=228.50 Aligned_cols=172 Identities=16% Similarity=0.183 Sum_probs=136.4
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHH--------HHHH------------HHhh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG--------VSVF------------LAQI 65 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG--------~i~~------------~~~~ 65 (185)
++++++...| +.+.+++|+|+++++|.++.++|||||||||||-+++ .+++ +++.
T Consensus 2 I~i~nv~K~y-----~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~ 76 (252)
T COG4604 2 ITIENVSKSY-----GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKK 76 (252)
T ss_pred eeehhhhHhh-----CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHH
Confidence 3455555444 4578999999999999999999999999999999993 2221 1111
Q ss_pred Cc---------------------eecCCCCCcc-----hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeE
Q psy5297 66 GC---------------------FVPCDSATIS-----VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSL 118 (185)
Q Consensus 66 g~---------------------~v~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~l 118 (185)
.+ -.|-....++ .+++.++.+++++..++...+||||||||+.+|..+ ++.+.
T Consensus 77 lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdy 156 (252)
T COG4604 77 LSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDY 156 (252)
T ss_pred HHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcE
Confidence 10 1222221111 477889999999999999999999999999999999 99999
Q ss_pred EEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 119 VIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 119 lllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
++|||| ++.+|..-..+.+ +++++++.|+||+++-|| +.+..++|+++.|++|+++.+|+++++
T Consensus 157 vlLDEP---LNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 157 VLLDEP---LNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred EEecCc---ccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHh
Confidence 999999 6667655444332 577777789999999999 999999999999999999999999874
No 238
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.4e-35 Score=230.74 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=115.3
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCc-
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATI- 76 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~- 76 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.+.+ ...++ |++|++..+
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~ 89 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG-YLFQNFALIE 89 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee-EEecchhhcc
Confidence 5799999999999999999999999999999999 32211 12345 888876221
Q ss_pred --c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297 77 --S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD 132 (185)
Q Consensus 77 --~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d 132 (185)
+ .+.++++.+++.+..++++.+||+||+||++||+++ .+|+++|||||++|+|+..
T Consensus 90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 169 (206)
T TIGR03608 90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN 169 (206)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence 1 133466778888888999999999999999999999 9999999999977776666
Q ss_pred hhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce
Q psy5297 133 GFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF 171 (185)
Q Consensus 133 ~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l 171 (185)
...+.+.+ +.+.+ .+.|+|++||+.+...+||++++|
T Consensus 170 ~~~l~~~l-~~~~~-~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 170 RDEVLDLL-LELND-EGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHHHHH-HHHHh-cCCEEEEEeCCHHHHhhcCEEEeC
Confidence 55555543 56655 489999999995556789998764
No 239
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-36 Score=259.36 Aligned_cols=160 Identities=15% Similarity=0.118 Sum_probs=123.1
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhC------ceecCCC-----------CCc-
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIG------CFVPCDS-----------ATI- 76 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g------~~v~~~~-----------~~~- 76 (185)
+++|+|+||++++|++++|+||||||||||+|+| |.|.+..... .+.++.. ...
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~ 116 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLT 116 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCC
Confidence 4699999999999999999999999999999999 3333221110 0111100 000
Q ss_pred -----chhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCC
Q psy5297 77 -----SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQP 150 (185)
Q Consensus 77 -----~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~ 150 (185)
..+..+++.+++.+..++++.+||+|||||++||+++ .+|+++||||||+|+|+.....+.+.+ ..+++ .|.
T Consensus 117 ~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL-~el~~-~G~ 194 (549)
T PRK13545 117 KEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKM-NEFKE-QGK 194 (549)
T ss_pred HHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH-HHHHh-CCC
Confidence 0133567778888888999999999999999999999 999999999997776665555555543 55655 589
Q ss_pred eEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 151 FTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 151 ~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|||++||+ .++..+||++++|++|++...+++++
T Consensus 195 TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~e 229 (549)
T PRK13545 195 TIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKE 229 (549)
T ss_pred EEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999 77889999999999999998886543
No 240
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=4.6e-35 Score=227.88 Aligned_cols=165 Identities=18% Similarity=0.238 Sum_probs=122.7
Q ss_pred ceEEEcccCCceeeec-CCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH--H-----------------HH
Q psy5297 4 GTLVLNQCRHPIVELQ-GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS--V-----------------FL 62 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~-~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i--~-----------------~~ 62 (185)
+.++++++...|-... ...+.+++|+||++++|++++|+||||||||||+|+| |.. . +.
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 4567777765552110 0125799999999999999999999999999999999 432 1 12
Q ss_pred HhhCceecCCCCC---cchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297 63 AQIGCFVPCDSAT---ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMAC 138 (185)
Q Consensus 63 ~~~g~~v~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~ 138 (185)
..++ |+||++.. +++.+++.... ...+||+||+||++||+++ .+|+++|||||++|+|......+.+
T Consensus 82 ~~i~-~~~q~~~~~~~~t~~~~i~~~~--------~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~ 152 (194)
T cd03213 82 KIIG-YVPQDDILHPTLTVRETLMFAA--------KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS 152 (194)
T ss_pred heEE-EccCcccCCCCCcHHHHHHHHH--------HhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 3345 88888632 34444443111 1128999999999999999 9999999999977777666555555
Q ss_pred HHHHHHHhcCCCeEEEecCh-h-HHHHhhccccceeeeeEEEE
Q psy5297 139 SIARELASNRQPFTLFATHF-H-EIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 139 ~il~~l~~~~~~~vii~tH~-~-~~~~~~d~~~~l~~g~i~~~ 179 (185)
.+ +.+++ .+.|+|++||+ . ++.++||++++|++|++...
T Consensus 153 ~l-~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 153 LL-RRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred HH-HHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 44 56665 48999999998 4 57789999999999998764
No 241
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-35 Score=237.26 Aligned_cols=170 Identities=14% Similarity=0.127 Sum_probs=127.0
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH------------H----------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV------------F---------- 61 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~------------~---------- 61 (185)
.++++++...| +.+.+++|+||++++|++++|+||||||||||+|+| |... +
T Consensus 16 ~l~~~~l~~~~-----~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 16 KSEVNKLNFYY-----GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred eEEEEEEEEEE-----CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 45566665444 235799999999999999999999999999999999 3221 1
Q ss_pred -------HHhhCceecCCCCCc--chh----------------------hHHHhhcCc----ccccccCcCccHHHHHHH
Q psy5297 62 -------LAQIGCFVPCDSATI--SVV----------------------DQIFTRVGA----ADSQYRGISTFMMEMKET 106 (185)
Q Consensus 62 -------~~~~g~~v~~~~~~~--~~~----------------------~~~l~~~~l----~~~~~~~~~~lS~g~~q~ 106 (185)
...++ |+||++..+ ++. .++++.+++ .+..++.+.+||+||+||
T Consensus 91 ~~~~~~~~~~i~-~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 91 EVDPIEVRMRIS-MVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred ccCHHHHhccEE-EEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 11234 888875211 111 122333443 234567889999999999
Q ss_pred HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
++||+++ .+|+++|||||++|+|......+.+.+ ..+++ +.|+|++||+ .++.++||++++|++|+++..++.+
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l-~~l~~--~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~ 245 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIEELI-SDLKN--KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATD 245 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHh--CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999 999999999997777665555554543 55554 5899999999 7788999999999999999887754
No 242
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-35 Score=256.14 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=126.8
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--------------HhhCceecCCCC------
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--------------AQIGCFVPCDSA------ 74 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--------------~~~g~~v~~~~~------ 74 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.|.+. ..++ |+||++.
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~-~~~q~~~~~~~~~ 339 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA-LVTEERRSTGIYA 339 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE-EcCCchhhCCccc
Confidence 3589999999999999999999999999999999 443321 1244 8887631
Q ss_pred Ccc---------------------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297 75 TIS---------------------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG 125 (185)
Q Consensus 75 ~~~---------------------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~ 125 (185)
.++ .+..+++.+++. +..++++.+||+|||||++||+++ .+|+++||||||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt 419 (491)
T PRK10982 340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT 419 (491)
T ss_pred CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 011 123345666774 467999999999999999999999 999999999998
Q ss_pred CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+|+|+.....+.+.+ +.+.+ .+.|||++||| .++..+||++++|++|+++..++.+
T Consensus 420 ~gLD~~~~~~~~~~l-~~l~~-~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 420 RGIDVGAKFEIYQLI-AELAK-KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred cccChhHHHHHHHHH-HHHHH-CCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 888777766666644 66766 58999999999 8888999999999999999877654
No 243
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.1e-34 Score=222.68 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=108.8
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhhCceecCCCCCcchhhHH
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQIGCFVPCDSATISVVDQI 82 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~g~~v~~~~~~~~~~~~~ 82 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.+. +...++ |+||++..++ ..+
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~--~tv 91 (178)
T cd03247 15 QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLIS-VLNQRPYLFD--TTL 91 (178)
T ss_pred ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEE-EEccCCeeec--ccH
Confidence 3699999999999999999999999999999999 3221 123345 8888764332 112
Q ss_pred HhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hH
Q psy5297 83 FTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HE 160 (185)
Q Consensus 83 l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~ 160 (185)
.+.+ +.+||+||+||++|||++ .+|+++|||||++|+|+.....+.+.+ ..+. .+.|+|++||+ .+
T Consensus 92 ~~~i---------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l-~~~~--~~~tii~~sh~~~~ 159 (178)
T cd03247 92 RNNL---------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI-FEVL--KDKTLIWITHHLTG 159 (178)
T ss_pred HHhh---------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH-HHHc--CCCEEEEEecCHHH
Confidence 2111 789999999999999999 999999999997776665544444433 4553 37899999999 55
Q ss_pred HHHhhccccceeeeeEEEE
Q psy5297 161 IALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 161 ~~~~~d~~~~l~~g~i~~~ 179 (185)
+ ..||++++|++|++.+.
T Consensus 160 ~-~~~d~~~~l~~g~i~~~ 177 (178)
T cd03247 160 I-EHMDKILFLENGKIIMQ 177 (178)
T ss_pred H-HhCCEEEEEECCEEEec
Confidence 5 57999999999999764
No 244
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.3e-34 Score=217.36 Aligned_cols=171 Identities=15% Similarity=0.125 Sum_probs=135.1
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV---------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~---------------- 60 (185)
+++++++...+-+.. +.-.||++|+|.+++||.++|+||+||||||||-++ |++.
T Consensus 6 ii~~~~l~ktvg~~~-~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 6 IIEVHHLSKTVGQGE-GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred eeehhhhhhhhcCCC-cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 455555544332211 234699999999999999999999999999999999 3332
Q ss_pred HH-HhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 61 FL-AQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 61 ~~-~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
++ .++| ||||....++ .+..+++.+|+.+.++.+|.+||||++||++|||++ .
T Consensus 85 ~R~~~vG-fVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~ 163 (228)
T COG4181 85 LRARHVG-FVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAG 163 (228)
T ss_pred hhcccee-EEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcC
Confidence 22 3456 9999763333 366788999999999999999999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEE
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESK 178 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~ 178 (185)
.|++++.||||-++|......+..++ =.++++.|.|.+++|||..++..|+|.+.|++|+++.
T Consensus 164 ~P~vLfADEPTGNLD~~Tg~~iaDLl-F~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 164 RPDVLFADEPTGNLDRATGDKIADLL-FALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred CCCEEeccCCCCCcchhHHHHHHHHH-HHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 99999999995555554445555544 3445558999999999999999999999999999864
No 245
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3.8e-35 Score=232.59 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=121.2
Q ss_pred EEEcccCCceeeec-CC-ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-------------
Q psy5297 6 LVLNQCRHPIVELQ-GG-VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL------------- 62 (185)
Q Consensus 6 ~~~~~~~~~~l~~~-~~-~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~------------- 62 (185)
+++++++..|-... ++ +..+++|+||++++|++++|+||||||||||+|+| |.|.+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 45666655442111 11 24799999999999999999999999999999999 433221
Q ss_pred --------HhhCceecCCCCCcc------------------------hhhHHHhhcCcccc-cccCcCccHHHHHHHHHH
Q psy5297 63 --------AQIGCFVPCDSATIS------------------------VVDQIFTRVGAADS-QYRGISTFMMEMKETATV 109 (185)
Q Consensus 63 --------~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~-~~~~~~~lS~g~~q~~~i 109 (185)
..++ |+||++..++ .+.++++.+++.+. .++++.+||+||+||++|
T Consensus 82 ~~~~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 82 REVLEVRRKTIG-YVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHhcceE-EEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 1244 8998863221 12345667777653 578899999999999999
Q ss_pred HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccce
Q psy5297 110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTF 171 (185)
Q Consensus 110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l 171 (185)
|+++ .+|+++||||||+|+|+.....+.+.+ ..+++ .+.|+|++||+ ..+..+||+++.+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 161 ARGFIADYPILLLDEPTASLDAANRQVVVELI-AEAKA-RGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHh-cCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999 999999999997777666655555544 56655 58999999999 6667899998765
No 246
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.1e-35 Score=234.33 Aligned_cols=166 Identities=13% Similarity=0.162 Sum_probs=122.7
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HH
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FL 62 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~ 62 (185)
+.++++++...|-. .++..+++++||++++|++++|+||||||||||+++| |.+. +.
T Consensus 10 ~~l~~~~l~~~~~~--~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 10 GIVKFQNVTFAYPT--RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred ceEEEEEEEEEeCC--CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45666666654411 0124699999999999999999999999999999999 3221 12
Q ss_pred HhhCceecCCCCCc--ch------------------------hhHHHhhc--CcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297 63 AQIGCFVPCDSATI--SV------------------------VDQIFTRV--GAADSQYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 63 ~~~g~~v~~~~~~~--~~------------------------~~~~l~~~--~l~~~~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
..++ |+||++..+ ++ +.++++.+ ++.+..++++.+||+||+||++||+++
T Consensus 88 ~~i~-~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 88 SKVS-LVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred hhEE-EEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 3355 888876221 11 11233445 566677888999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE 176 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i 176 (185)
.+|+++|||||++|+|+.....+.+.+ ..+++ +.|+|++||+ .++ ..||++++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~--~~tii~~sh~~~~~-~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQAL-YDWPE--RRTVLVIAHRLSTV-ERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHH-HHHcC--CCEEEEEECCHHHH-HhCCEEEEecCCcC
Confidence 999999999997777666655555544 45543 5899999999 555 45999999999874
No 247
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-35 Score=235.60 Aligned_cols=159 Identities=15% Similarity=0.088 Sum_probs=123.0
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH---------------------------HHHhhCceecCCC
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------------------FLAQIGCFVPCDS 73 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------------------~~~~~g~~v~~~~ 73 (185)
++.+++|+||++++|++++|+||||||||||+|+| |... +...++ |+||++
T Consensus 20 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~-~v~q~~ 98 (261)
T PRK14263 20 NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIG-MVFQQP 98 (261)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceE-EEecCC
Confidence 46799999999999999999999999999999999 3221 112244 888886
Q ss_pred CC--cch--------------------hhHHHhhcCccc----ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCC
Q psy5297 74 AT--ISV--------------------VDQIFTRVGAAD----SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGR 126 (185)
Q Consensus 74 ~~--~~~--------------------~~~~l~~~~l~~----~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~ 126 (185)
.. .++ +.++++.+++.+ ..++++.+||+||+||++|||++ .+|+++||||||+
T Consensus 99 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPts 178 (261)
T PRK14263 99 NPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCS 178 (261)
T ss_pred ccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 32 222 223455555532 33567889999999999999999 9999999999977
Q ss_pred CCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccccee--------eeeEEEEeccCC
Q psy5297 127 GTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFR--------NVHESKYLYHTN 184 (185)
Q Consensus 127 g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~--------~g~i~~~~~~~~ 184 (185)
|+|+.....+.+.+ ..+.+ +.|+|++||+ .++.++||++++|+ +|+++..++.++
T Consensus 179 gLD~~~~~~l~~~l-~~~~~--~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~ 242 (261)
T PRK14263 179 ALDPIATRRVEELM-VELKK--DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQ 242 (261)
T ss_pred cCCHHHHHHHHHHH-HHHhc--CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHH
Confidence 77776666555544 55543 6899999999 77889999999995 899998887653
No 248
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=8.5e-35 Score=227.43 Aligned_cols=147 Identities=17% Similarity=0.191 Sum_probs=117.6
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhhCceecCCCCC---cc-
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQIGCFVPCDSAT---IS- 77 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~g~~v~~~~~~---~~- 77 (185)
.+.+++|+||++++|++++|+|+||||||||+++| |.+. +..+++ |+||.+.. .+
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv 90 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLL-YLGHAPGIKTTLSV 90 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheE-EeccccccCCCcCH
Confidence 35799999999999999999999999999999999 3332 123445 88876522 12
Q ss_pred --------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHH
Q psy5297 78 --------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAR 142 (185)
Q Consensus 78 --------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~ 142 (185)
.++++++.+++.+..++++.+||+|||||+++|+++ .+|+++|||||++|+|+.....+.+.+ .
T Consensus 91 ~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~ 169 (201)
T cd03231 91 LENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM-A 169 (201)
T ss_pred HHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-H
Confidence 244567778888888899999999999999999999 999999999997777666655555544 5
Q ss_pred HHHhcCCCeEEEecCh-hHHHHhhccccce
Q psy5297 143 ELASNRQPFTLFATHF-HEIALLSRVIPTF 171 (185)
Q Consensus 143 ~l~~~~~~~vii~tH~-~~~~~~~d~~~~l 171 (185)
.+++ .+.|+|++||+ .+....|++++.+
T Consensus 170 ~~~~-~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 170 GHCA-RGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHh-CCCEEEEEecCchhhhhccceeEec
Confidence 5554 58899999998 8888899998765
No 249
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.3e-35 Score=286.20 Aligned_cols=174 Identities=16% Similarity=0.087 Sum_probs=140.3
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQ 64 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~ 64 (185)
.++++++...| .++.+.+++|+||++++||+++|+||||||||||+|+| |.|.+ +.+
T Consensus 1937 ~L~v~nLsK~Y---~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257 1937 ILRLNELTKVY---SGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred eEEEEEEEEEE---CCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhh
Confidence 45666665444 11135799999999999999999999999999999999 33322 334
Q ss_pred hCceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEE
Q psy5297 65 IGCFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLV 119 (185)
Q Consensus 65 ~g~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ll 119 (185)
+| |+||.+..+ + .++++++.+++.+..++++++||||||||+++|+|+ .+|+++
T Consensus 2014 IG-y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257 2014 MG-YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred EE-EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 66 999986322 2 133467778898889999999999999999999999 999999
Q ss_pred EEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 120 IIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 120 llDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|||||++|+|+.....+.+.+ +.+++ .|+|||++||+ +++.++|||+++|++|++.+.|++++
T Consensus 2093 LLDEPTsGLDp~sr~~l~~lL-~~l~~-~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~ 2156 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRMLWNTI-VSIIR-EGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQH 2156 (2272)
T ss_pred EEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999998888777766665544 66665 48999999999 88999999999999999999987654
No 250
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.4e-35 Score=223.45 Aligned_cols=138 Identities=20% Similarity=0.271 Sum_probs=105.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------HHhhCceecCCCCCc---
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------LAQIGCFVPCDSATI--- 76 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------~~~~g~~v~~~~~~~--- 76 (185)
+.+++++||++++|++++|+||||||||||+|+| |.+.+ ..+++ |+||.+..+
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~ 91 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG-MVFQDFALFPHL 91 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE-EEecCCccCCCC
Confidence 5799999999999999999999999999999999 32211 12234 777765322
Q ss_pred chhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEe
Q psy5297 77 SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA 155 (185)
Q Consensus 77 ~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~ 155 (185)
+..+++ ... ||+||+||+++|+++ .+|+++|||||++|+|+.....+.+.+ +.++++.+.|+|++
T Consensus 92 t~~~~l----~~~---------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l-~~~~~~~~~tiii~ 157 (178)
T cd03229 92 TVLENI----ALG---------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALL-KSLQAQLGITVVLV 157 (178)
T ss_pred CHHHhe----eec---------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEE
Confidence 222221 111 999999999999999 999999999997776665555554443 56665337899999
Q ss_pred cCh-hHHHHhhccccceeeee
Q psy5297 156 THF-HEIALLSRVIPTFRNVH 175 (185)
Q Consensus 156 tH~-~~~~~~~d~~~~l~~g~ 175 (185)
||+ .++..+||++++|++|+
T Consensus 158 sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 158 THDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred eCCHHHHHHhcCEEEEEeCCC
Confidence 999 77777999999999874
No 251
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-35 Score=226.12 Aligned_cols=164 Identities=15% Similarity=0.183 Sum_probs=121.1
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH---------H---------HHHhh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS---------V---------FLAQI 65 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i---------~---------~~~~~ 65 (185)
.++++++...|-.. ++.+.+++|+||++++|++++|+||||||||||+|+| |.. . +...+
T Consensus 3 ~l~~~~l~~~~~~~-~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVK-GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCC-CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhce
Confidence 46677776544210 0125799999999999999999999999999999999 321 1 12334
Q ss_pred CceecCCCCC---cchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHH
Q psy5297 66 GCFVPCDSAT---ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIA 141 (185)
Q Consensus 66 g~~v~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il 141 (185)
+ |++|.+.. .++.+++..... ..+||+||+||+++|+++ .+|+++|+|||++|+|......+.+. +
T Consensus 82 ~-~~~q~~~~~~~~tv~~~l~~~~~--------~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~-l 151 (192)
T cd03232 82 G-YVEQQDVHSPNLTVREALRFSAL--------LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRF-L 151 (192)
T ss_pred E-EecccCccccCCcHHHHHHHHHH--------HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHH-H
Confidence 5 88887632 344554431100 119999999999999999 99999999999777766655555554 3
Q ss_pred HHHHhcCCCeEEEecCh-h-HHHHhhccccceee-eeEEEEe
Q psy5297 142 RELASNRQPFTLFATHF-H-EIALLSRVIPTFRN-VHESKYL 180 (185)
Q Consensus 142 ~~l~~~~~~~vii~tH~-~-~~~~~~d~~~~l~~-g~i~~~~ 180 (185)
+.+++ .+.|+|++||+ . ++...||++++|++ |++++.+
T Consensus 152 ~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 152 KKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 56665 58999999999 5 36889999999999 9997653
No 252
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-34 Score=227.12 Aligned_cols=170 Identities=15% Similarity=0.102 Sum_probs=125.5
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH----------H------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------F------------ 61 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------~------------ 61 (185)
.+.++|+...|-.. .+++.+++|+||++++|++++|+||||||||||+++| |... +
T Consensus 3 ~~~~~~~~~~~~~~-~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKG-RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccC-CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 45667776555332 2346799999999999999999999999999999999 3321 1
Q ss_pred HHhhCceecCCCCC---cchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHH
Q psy5297 62 LAQIGCFVPCDSAT---ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMA 137 (185)
Q Consensus 62 ~~~~g~~v~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~ 137 (185)
...++ |+||+... +++.+++....... .++++.+||+||+||++||+++ .+|+++|||||++|+|+.....+.
T Consensus 82 ~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~ 158 (202)
T cd03233 82 PGEII-YVSEEDVHFPTLTVRETLDFALRCK--GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEIL 158 (202)
T ss_pred cceEE-EEecccccCCCCcHHHHHhhhhhhc--cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHH
Confidence 11244 88887632 34555543211111 6788899999999999999999 999999999997777776666555
Q ss_pred HHHHHHHHhcCCCeEEE-ecCh-hHHHHhhccccceeeeeEEEE
Q psy5297 138 CSIARELASNRQPFTLF-ATHF-HEIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 138 ~~il~~l~~~~~~~vii-~tH~-~~~~~~~d~~~~l~~g~i~~~ 179 (185)
+.+ +.+.++.+.++++ ++|+ .++.++||++++|++|+++..
T Consensus 159 ~~l-~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~ 201 (202)
T cd03233 159 KCI-RTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201 (202)
T ss_pred HHH-HHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEec
Confidence 544 5665433566555 5566 788899999999999998754
No 253
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.6e-35 Score=241.34 Aligned_cols=169 Identities=13% Similarity=0.079 Sum_probs=122.1
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCc
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATI 76 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~ 76 (185)
.++++++... .+.+++|+||++++|++++|+||||||||||+|+| |.|.+...++ |+||.+..+
T Consensus 39 ~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~-yv~q~~~l~ 110 (282)
T cd03291 39 NLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRIS-FSSQFSWIM 110 (282)
T ss_pred eEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEE-EEeCccccc
Confidence 4556665431 25699999999999999999999999999999999 4444444456 888886322
Q ss_pred --chhh--------------HHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCC
Q psy5297 77 --SVVD--------------QIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGT 128 (185)
Q Consensus 77 --~~~~--------------~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~ 128 (185)
++.+ .++..+++.+. .++++.+||+||+||++||+++ .+|+++|||||++|+
T Consensus 111 ~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gL 190 (282)
T cd03291 111 PGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (282)
T ss_pred ccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 2222 22233333321 2234579999999999999999 999999999996666
Q ss_pred CcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccC
Q psy5297 129 STFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 129 ~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
|+.....+...++..++ .+.|||++||+.+....||++++|++|+++..++++
T Consensus 191 D~~~~~~l~~~ll~~~~--~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~ 243 (282)
T cd03291 191 DVFTEKEIFESCVCKLM--ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFS 243 (282)
T ss_pred CHHHHHHHHHHHHHHhh--CCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHH
Confidence 55444434333334443 378999999994444689999999999999887654
No 254
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=9.4e-35 Score=222.23 Aligned_cols=137 Identities=17% Similarity=0.194 Sum_probs=106.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHhhCceecCCCCCcchhhH
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQIGCFVPCDSATISVVDQ 81 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~~g~~v~~~~~~~~~~~~ 81 (185)
+.+++|+||++++|++++|+||||||||||+++| |.+. +..+++ |++|++..++ ..
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~--~t 91 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFS--GS 91 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE-EECCCCcccc--Cc
Confidence 4699999999999999999999999999999999 2221 122344 8888764332 12
Q ss_pred HHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhH
Q psy5297 82 IFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHE 160 (185)
Q Consensus 82 ~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~ 160 (185)
+.+.+ ||+||+||++||+++ .+|+++|||||++|+|+.....+.+.+ ..+++ .+.|+|++||+.+
T Consensus 92 v~~~l------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l-~~~~~-~~~tii~~sh~~~ 157 (173)
T cd03246 92 IAENI------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI-AALKA-AGATRIVIAHRPE 157 (173)
T ss_pred HHHHC------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHH-HHHHh-CCCEEEEEeCCHH
Confidence 22211 999999999999999 999999999997777776666555544 66665 5899999999944
Q ss_pred HHHhhccccceeeeeE
Q psy5297 161 IALLSRVIPTFRNVHE 176 (185)
Q Consensus 161 ~~~~~d~~~~l~~g~i 176 (185)
....||++++|++|++
T Consensus 158 ~~~~~d~v~~l~~G~i 173 (173)
T cd03246 158 TLASADRILVLEDGRV 173 (173)
T ss_pred HHHhCCEEEEEECCCC
Confidence 4468999999999874
No 255
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.9e-35 Score=231.30 Aligned_cols=150 Identities=12% Similarity=0.159 Sum_probs=112.0
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCc--chh-------------
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATI--SVV------------- 79 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~--~~~------------- 79 (185)
+.+++++||++++|++++|+||||||||||+|+| |.|.+.++++ |+||++..+ ++.
T Consensus 18 ~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~-~~~q~~~l~~~t~~enl~~~~~~~~~~ 96 (204)
T cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA-YVSQEPWIQNGTIRENILFGKPFDEER 96 (204)
T ss_pred cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEE-EEecCchhccCcHHHHhccCCCcCHHH
Confidence 3699999999999999999999999999999999 5555555566 999986221 211
Q ss_pred -hHHHhhcCc-----------ccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHh
Q psy5297 80 -DQIFTRVGA-----------ADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELAS 146 (185)
Q Consensus 80 -~~~l~~~~l-----------~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~ 146 (185)
.+.++.+++ ....++++.+||+||+||++|||++ .+|+++|||||++|+|+.....+.+.++..+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~ 176 (204)
T cd03250 97 YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL 176 (204)
T ss_pred HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc
Confidence 122222232 2234566789999999999999999 999999999996666554444444433344444
Q ss_pred cCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297 147 NRQPFTLFATHF-HEIALLSRVIPTFRNVH 175 (185)
Q Consensus 147 ~~~~~vii~tH~-~~~~~~~d~~~~l~~g~ 175 (185)
.+.|||++||+ ..+.. ||++++|++|+
T Consensus 177 -~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 177 -NNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred -CCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 48999999999 55555 99999999875
No 256
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-34 Score=226.85 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=120.2
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQI 65 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~ 65 (185)
+++++++..+ +.+.+++|+||++++|++++|+||||||||||+++| |.|. +..++
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~ 76 (204)
T PRK13538 2 LEARNLACER-----DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDL 76 (204)
T ss_pred eEEEEEEEEE-----CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhhe
Confidence 4555555433 235799999999999999999999999999999999 3332 12345
Q ss_pred CceecCCCCCc---c------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeC
Q psy5297 66 GCFVPCDSATI---S------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDE 123 (185)
Q Consensus 66 g~~v~~~~~~~---~------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDE 123 (185)
+ |++|....+ + .++++++.+++.+..++++++||+||+||++||+++ .+|+++||||
T Consensus 77 ~-~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 155 (204)
T PRK13538 77 L-YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDE 155 (204)
T ss_pred E-EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 5 777765221 1 234567778888888999999999999999999999 9999999999
Q ss_pred CCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccce
Q psy5297 124 LGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTF 171 (185)
Q Consensus 124 P~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l 171 (185)
||+|+|+.....+.+.+ +.+++ .+.|+|++||+ .++.+..+|++++
T Consensus 156 Pt~~LD~~~~~~l~~~l-~~~~~-~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 156 PFTAIDKQGVARLEALL-AQHAE-QGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCccCCHHHHHHHHHHH-HHHHH-CCCEEEEEecChhhhccCCceEEec
Confidence 97776666655555543 55555 58899999999 7777766776655
No 257
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.3e-35 Score=255.72 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=123.1
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH--------H--------------HHHhhCceecCCCCC---
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS--------V--------------FLAQIGCFVPCDSAT--- 75 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i--------~--------------~~~~~g~~v~~~~~~--- 75 (185)
++.+++|+||++++|++++|+||||||||||+|+| |.. . ...+++ |+||+...
T Consensus 272 ~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~ 350 (490)
T PRK10938 272 DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIG-YVSSSLHLDYR 350 (490)
T ss_pred CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhce-EECHHHHhhcc
Confidence 35699999999999999999999999999999999 321 1 122345 77775310
Q ss_pred --cc-------------------------hhhHHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCC
Q psy5297 76 --IS-------------------------VVDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGR 126 (185)
Q Consensus 76 --~~-------------------------~~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~ 126 (185)
.+ .++++++.+++.+ ..++++++||+|||||++||+++ .+|+++||||||+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~ 430 (490)
T PRK10938 351 VSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQ 430 (490)
T ss_pred cCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 00 1345667788886 78899999999999999999999 9999999999977
Q ss_pred CCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHH-hhccccceeeeeEEEEec
Q psy5297 127 GTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIAL-LSRVIPTFRNVHESKYLY 181 (185)
Q Consensus 127 g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~-~~d~~~~l~~g~i~~~~~ 181 (185)
|+|+.....+.+.+ ..++++.+.|||++||+ .++.+ +||++++|++|+++....
T Consensus 431 gLD~~~~~~l~~~L-~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 431 GLDPLNRQLVRRFV-DVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred cCCHHHHHHHHHHH-HHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 77766666555544 66665324579999999 67766 599999999999877654
No 258
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=237.05 Aligned_cols=158 Identities=17% Similarity=0.148 Sum_probs=127.5
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH-------HH------------HHhhCceecCCC----CCcc--
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS-------VF------------LAQIGCFVPCDS----ATIS-- 77 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i-------~~------------~~~~g~~v~~~~----~~~~-- 77 (185)
.++.|+||+|++|++++++|||||||||+||++ |.+ .+ .++++ +|.-.. +.++
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~-~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIG-LVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHH-HHhhhhheeeeechhh
Confidence 489999999999999999999999999999999 322 11 12222 221111 1111
Q ss_pred -------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHH
Q psy5297 78 -------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMA 137 (185)
Q Consensus 78 -------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~ 137 (185)
+.+.+.+.+++++.++.++..||.|||+|+.+|++| ++|++++|||||-|+|....+.+.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir 196 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence 233445667888899999999999999999999999 999999999998888888777777
Q ss_pred HHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 138 CSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 138 ~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+.+ +...+++++||+++||+ .+++++|+|+++|+.|+++++|+.+
T Consensus 197 ~Fl-ke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~ 242 (325)
T COG4586 197 EFL-KEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLA 242 (325)
T ss_pred HHH-HHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHH
Confidence 755 67776689999999999 9999999999999999999987654
No 259
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-35 Score=231.69 Aligned_cols=159 Identities=19% Similarity=0.234 Sum_probs=127.5
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH--------------HHHHhhCceecCCC-----
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS--------------VFLAQIGCFVPCDS----- 73 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i--------------~~~~~~g~~v~~~~----- 73 (185)
+++.+|+|+|++|++||.++|+|||||||||||+++ |.+ .++.++| +|...-
T Consensus 42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG-~vS~~L~~~~~ 120 (257)
T COG1119 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG-LVSSELHERFR 120 (257)
T ss_pred CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC-ccCHHHHhhcc
Confidence 568999999999999999999999999999999999 111 2344555 433210
Q ss_pred --------------------------CCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCC
Q psy5297 74 --------------------------ATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGR 126 (185)
Q Consensus 74 --------------------------~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~ 126 (185)
.....+..+++.+++.+..+++..+||.|||||+.||||+ .+|+++|||||++
T Consensus 121 ~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~ 200 (257)
T COG1119 121 VRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ 200 (257)
T ss_pred cccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccc
Confidence 1111466788999999999999999999999999999999 9999999999977
Q ss_pred CCCcCChhHHHHHHHHHHHh-cCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297 127 GTSTFDGFGMACSIARELAS-NRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY 181 (185)
Q Consensus 127 g~~~~d~~~~~~~il~~l~~-~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~ 181 (185)
|+|......+.+.+ ..+.. ..+.++|+|||. +++....+++..+++|+++..|.
T Consensus 201 GLDl~~re~ll~~l-~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 201 GLDLIAREQLLNRL-EELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred cCChHHHHHHHHHH-HHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 77666655555544 45543 247889999998 88999899999999999988763
No 260
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.3e-34 Score=225.66 Aligned_cols=167 Identities=14% Similarity=0.138 Sum_probs=124.1
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------H
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------F 61 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~ 61 (185)
.+.++++++...|- +..+.+++|+||++++|++++|+||||||||||+|+| |.+. +
T Consensus 4 ~~~l~~~~l~~~~~---~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 4 HGEIEVENLSVRYA---PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCeEEEEEEEEEeC---CCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 45677777765441 1224699999999999999999999999999999999 3221 1
Q ss_pred HHhhCceecCCCCCc--chhhHH-----------HhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCC
Q psy5297 62 LAQIGCFVPCDSATI--SVVDQI-----------FTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRG 127 (185)
Q Consensus 62 ~~~~g~~v~~~~~~~--~~~~~~-----------l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g 127 (185)
..+++ |+||++..+ ++.+++ .+.++ .++++.+||+||+||+++||++ .+|+++|||||++|
T Consensus 81 ~~~i~-~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 155 (207)
T cd03369 81 RSSLT-IIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATAS 155 (207)
T ss_pred HhhEE-EEecCCcccCccHHHHhcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence 23455 999987322 333222 11111 4677899999999999999999 99999999999777
Q ss_pred CCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297 128 TSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY 181 (185)
Q Consensus 128 ~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~ 181 (185)
+|+.....+.+.+ ..+. .+.|+|++||+ .++. .||++++|++|++...++
T Consensus 156 LD~~~~~~l~~~l-~~~~--~~~tiii~th~~~~~~-~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 156 IDYATDALIQKTI-REEF--TNSTILTIAHRLRTII-DYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CCHHHHHHHHHHH-HHhc--CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEecCC
Confidence 6666555444433 4443 38899999999 5554 499999999999987765
No 261
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-35 Score=226.57 Aligned_cols=163 Identities=17% Similarity=0.128 Sum_probs=129.4
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHhhCceecCCC---CCcc
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQIGCFVPCDS---ATIS 77 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~~g~~v~~~~---~~~~ 77 (185)
.++.+++++||++.+||+.+|+||||||||||||.+ |.+.+ +++.-+.+||.. +.|+
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 457899999999999999999999999999999999 23222 122222455543 1111
Q ss_pred -----------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C------CCeEEEEeCCCCC
Q psy5297 78 -----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T------ENSLVIIDELGRG 127 (185)
Q Consensus 78 -----------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~------~p~llllDEP~~g 127 (185)
++..+++..++..+..+...+||||+|||+.+||.+ + +++.++|||||+.
T Consensus 92 v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsa 171 (259)
T COG4559 92 VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171 (259)
T ss_pred HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccc
Confidence 366778889999999999999999999999999986 2 4569999999666
Q ss_pred CCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 128 TSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 128 ~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
+|........+. .+.+.+ .|..|+.+-|| +..+.+|||+++|++||+++.|.++++
T Consensus 172 LDi~HQ~~tl~l-aR~la~-~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 172 LDIAHQHHTLRL-ARQLAR-EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred cchHHHHHHHHH-HHHHHh-cCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 666665555553 367776 58999999999 888899999999999999999988763
No 262
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-35 Score=237.18 Aligned_cols=155 Identities=20% Similarity=0.191 Sum_probs=132.1
Q ss_pred ceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCcc----
Q psy5297 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATIS---- 77 (185)
Q Consensus 27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~~---- 77 (185)
-+++|+.+.-.+++|.|++|||||||+|+| |.|.+ ...+| ||||+...|+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriG-YVFQDARLFpH~tV 93 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIG-YVFQDARLFPHYTV 93 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheee-eEeeccccccceEE
Confidence 468888876699999999999999999999 33321 35677 9999985544
Q ss_pred --------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH--
Q psy5297 78 --------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI-- 140 (185)
Q Consensus 78 --------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i-- 140 (185)
-++++...+|+++.+++.|.+||||+|||++|+||+ +.|+++||||| ++.+|.....+.+
T Consensus 94 rgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEP---LaSLD~~RK~Eilpy 170 (352)
T COG4148 94 RGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEP---LASLDLPRKREILPY 170 (352)
T ss_pred ecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCc---hhhcccchhhHHHHH
Confidence 367888899999999999999999999999999999 99999999999 6666655444443
Q ss_pred HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 141 ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 141 l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
++++.++.+..|+++||. .|++++||++++|++|++.+.|..+++
T Consensus 171 lERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v 216 (352)
T COG4148 171 LERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEV 216 (352)
T ss_pred HHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHH
Confidence 689988889999999998 999999999999999999999977653
No 263
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.9e-35 Score=259.52 Aligned_cols=171 Identities=15% Similarity=0.097 Sum_probs=129.6
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--HhhCceec
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--AQIGCFVP 70 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--~~~g~~v~ 70 (185)
|.++.++++|+...|- +.+.+++|+||++++|++++|+||||||||||||+| |.|.+. ..++ |+|
T Consensus 2 ~~~~~l~i~~l~~~y~----~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~-~v~ 76 (556)
T PRK11819 2 MAQYIYTMNRVSKVVP----PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVG-YLP 76 (556)
T ss_pred cccEEEEEeeEEEEeC----CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEe
Confidence 5677888888876551 136799999999999999999999999999999999 554442 2355 999
Q ss_pred CCCCC---cchhhHH---------------------------------------------------------HhhcCccc
Q psy5297 71 CDSAT---ISVVDQI---------------------------------------------------------FTRVGAAD 90 (185)
Q Consensus 71 ~~~~~---~~~~~~~---------------------------------------------------------l~~~~l~~ 90 (185)
|++.. +++.+++ ++.+++.
T Consensus 77 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~- 155 (556)
T PRK11819 77 QEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP- 155 (556)
T ss_pred cCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-
Confidence 98632 2322222 2233443
Q ss_pred ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccc
Q psy5297 91 SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVI 168 (185)
Q Consensus 91 ~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~ 168 (185)
..++++++||+|||||++||+++ .+|+++||||| |+.+|.....+.. +.+++ .+.|||++||+ .++..+||++
T Consensus 156 ~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEP---t~~LD~~~~~~l~-~~L~~-~~~tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 156 PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEP---TNHLDAESVAWLE-QFLHD-YPGTVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCC---CCcCChHHHHHHH-HHHHh-CCCeEEEEeCCHHHHHhhcCeE
Confidence 25788999999999999999999 99999999999 5555555555432 45554 34699999999 7888999999
Q ss_pred cceeeeeEE-EEecc
Q psy5297 169 PTFRNVHES-KYLYH 182 (185)
Q Consensus 169 ~~l~~g~i~-~~~~~ 182 (185)
++|++|+++ +.++.
T Consensus 231 ~~l~~g~i~~~~g~~ 245 (556)
T PRK11819 231 LELDRGRGIPWEGNY 245 (556)
T ss_pred EEEeCCEEEEecCCH
Confidence 999999986 55543
No 264
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=7.5e-35 Score=235.68 Aligned_cols=172 Identities=10% Similarity=0.044 Sum_probs=123.5
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------H
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------L 62 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~ 62 (185)
+.++++++...| .+..+.+++|+||++++|++++|+|+||||||||+|+| |.+.+ .
T Consensus 18 ~~i~~~~l~~~~---~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 18 GEIKIHDLCVRY---ENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred ceEEEEEEEEEe---CCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 346666665433 11124699999999999999999999999999999999 33221 2
Q ss_pred HhhCceecCCCCCcc--h--------------hhHHHhhcC-----------cccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 63 AQIGCFVPCDSATIS--V--------------VDQIFTRVG-----------AADSQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 63 ~~~g~~v~~~~~~~~--~--------------~~~~l~~~~-----------l~~~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
..++ |+||++..++ + +..+++..+ ++...++++.+||+||+||+++||++ .
T Consensus 95 ~~i~-~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLS-IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEE-EECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 3445 8998763221 0 112222223 33334556789999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+|+++||||||+|+|+.....+.+.+ ..+. .+.|+|++||+ ..+. .||++++|++|+++..++++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l-~~~~--~~~tiii~sh~~~~~~-~~dri~~l~~G~i~~~g~~~ 239 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVV-MTAF--ADRTVVTIAHRVSTIL-DADLVLVLSRGILVECDTPE 239 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHH-HHhc--CCCEEEEEecChHHHH-hCCEEEEEECCEEEEeCCHH
Confidence 99999999997776665544443433 4443 37999999999 5554 59999999999999887754
No 265
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-34 Score=230.73 Aligned_cols=156 Identities=17% Similarity=0.181 Sum_probs=116.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhCceecCCCCCc--chh
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIGCFVPCDSATI--SVV 79 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g~~v~~~~~~~--~~~ 79 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.+.+ ...++ |+||++..+ ++.
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~ 92 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG-VVPQDTVLFNDTIG 92 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE-EECCCChhhcchHH
Confidence 5699999999999999999999999999999999 33221 22355 888886322 221
Q ss_pred hH---------------HHhhcCc-----------ccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297 80 DQ---------------IFTRVGA-----------ADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD 132 (185)
Q Consensus 80 ~~---------------~l~~~~l-----------~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d 132 (185)
++ .+...++ +...++++.+||+||+||++||+++ .+|+++||||||+|+|+..
T Consensus 93 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~ 172 (236)
T cd03253 93 YNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172 (236)
T ss_pred HHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 11 1112222 2234556789999999999999999 9999999999977766665
Q ss_pred hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
...+.+.+ ..+++ +.|+|++||+ .++ ..||++++|++|++...++.+
T Consensus 173 ~~~l~~~l-~~~~~--~~tiii~sh~~~~~-~~~d~~~~l~~g~i~~~~~~~ 220 (236)
T cd03253 173 EREIQAAL-RDVSK--GRTTIVIAHRLSTI-VNADKIIVLKDGRIVERGTHE 220 (236)
T ss_pred HHHHHHHH-HHhcC--CCEEEEEcCCHHHH-HhCCEEEEEECCEEEeeCCHH
Confidence 55555544 55543 8899999999 555 459999999999998877653
No 266
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-35 Score=226.07 Aligned_cols=176 Identities=19% Similarity=0.193 Sum_probs=143.6
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------- 61 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------- 61 (185)
|.+..+++.++...| ++..+++|+||++.+||.-+|+|||||||||+|.+| |.+.+
T Consensus 1 ~~~~iL~~~~vsVsF-----~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e 75 (249)
T COG4674 1 MNPIILYLDGVSVSF-----GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPE 75 (249)
T ss_pred CCCceEEEeceEEEE-----cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCH
Confidence 445567777766544 446799999999999999999999999999999999 33322
Q ss_pred ----HHhhCceecCCCCCc---c-----------------------------hhhHHHhhcCcccccccCcCccHHHHHH
Q psy5297 62 ----LAQIGCFVPCDSATI---S-----------------------------VVDQIFTRVGAADSQYRGISTFMMEMKE 105 (185)
Q Consensus 62 ----~~~~g~~v~~~~~~~---~-----------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q 105 (185)
+..+| --||.+..+ + +++++++..|+.+..++..+.||.||||
T Consensus 76 ~~IAr~GIG-RKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQ 154 (249)
T COG4674 76 HRIARAGIG-RKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQ 154 (249)
T ss_pred HHHHHhccC-ccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhh
Confidence 12233 445544211 1 4778889999999999999999999999
Q ss_pred HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
|+.|...+ ++|+++++|||.+|++..+.....+++ +.++. .++|+++.|| ..+.++++++.+|+.|.+.++|+.+
T Consensus 155 wLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl-~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld 231 (249)
T COG4674 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL-KSLAG--KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD 231 (249)
T ss_pred hhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHH-HHHhc--CceEEEEeccHHHHHHhhheeEEEeccceeecccHH
Confidence 99999999 999999999999998887777666654 77775 7899999999 8889999999999999999999876
Q ss_pred CC
Q psy5297 184 NV 185 (185)
Q Consensus 184 ~~ 185 (185)
++
T Consensus 232 ~v 233 (249)
T COG4674 232 EV 233 (249)
T ss_pred Hh
Confidence 53
No 267
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.4e-35 Score=235.34 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=116.4
Q ss_pred eeeceEEEeeC-----CceeEEEEccCCCcHHHHHHHH--------HHHHHHH-hhCceecCCCC---Ccch--------
Q psy5297 24 YIPNDVYFKSG-----EVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA-QIGCFVPCDSA---TISV-------- 78 (185)
Q Consensus 24 ~il~~isl~i~-----~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~-~~g~~v~~~~~---~~~~-------- 78 (185)
..++|++|++. +|++++|+||||||||||+|+| |.+.+.. .++ |+||... ..++
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~-~~~q~~~~~~~~tv~e~l~~~~ 86 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-YKPQYIKADYEGTVRDLLSSIT 86 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEE-EecccccCCCCCCHHHHHHHHh
Confidence 36677777775 7999999999999999999999 5554443 445 8888752 1121
Q ss_pred ---------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcC
Q psy5297 79 ---------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNR 148 (185)
Q Consensus 79 ---------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~ 148 (185)
..++++.+++.+..++++++||+||+||++||+++ .+|+++|||||++++|+.....+.+.+ ..+.++.
T Consensus 87 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~ 165 (246)
T cd03237 87 KDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI-RRFAENN 165 (246)
T ss_pred hhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhc
Confidence 23456777888888999999999999999999999 999999999997776666555555544 5555435
Q ss_pred CCeEEEecCh-hHHHHhhccccceeee
Q psy5297 149 QPFTLFATHF-HEIALLSRVIPTFRNV 174 (185)
Q Consensus 149 ~~~vii~tH~-~~~~~~~d~~~~l~~g 174 (185)
+.|||++||+ .++..+||++++|+++
T Consensus 166 ~~tiiivsHd~~~~~~~~d~i~~l~~~ 192 (246)
T cd03237 166 EKTAFVVEHDIIMIDYLADRLIVFEGE 192 (246)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEcCC
Confidence 8999999999 7778899999999654
No 268
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.7e-34 Score=224.47 Aligned_cols=148 Identities=20% Similarity=0.134 Sum_probs=113.3
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH---------HH--------------HHhhCceecCCCCCcc-
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS---------VF--------------LAQIGCFVPCDSATIS- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i---------~~--------------~~~~g~~v~~~~~~~~- 77 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.. .+ ...++ |+||.+..++
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~~~~ 91 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF-LAFQYPPEIPG 91 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE-EeecChhhccC
Confidence 5799999999999999999999999999999999 331 11 01134 7888763322
Q ss_pred -hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEe
Q psy5297 78 -VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA 155 (185)
Q Consensus 78 -~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~ 155 (185)
.+.+.+ ++...+||+||+||+++|+++ .+|+++||||||+|+|+.....+.+.+ ..+++ .+.|+|++
T Consensus 92 ~~~~~~l---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L-~~~~~-~~~tiii~ 160 (200)
T cd03217 92 VKNADFL---------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI-NKLRE-EGKSVLII 160 (200)
T ss_pred ccHHHHH---------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHH-CCCEEEEE
Confidence 122222 333468999999999999999 999999999997776665555554443 56655 48999999
Q ss_pred cCh-hHHHH-hhccccceeeeeEEEEecc
Q psy5297 156 THF-HEIAL-LSRVIPTFRNVHESKYLYH 182 (185)
Q Consensus 156 tH~-~~~~~-~~d~~~~l~~g~i~~~~~~ 182 (185)
||+ ..+.+ +||++++|++|++...+..
T Consensus 161 sh~~~~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 161 THYQRLLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred ecCHHHHHHhhCCEEEEEECCEEEEEccH
Confidence 999 65555 7999999999999888743
No 269
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=7.7e-35 Score=262.20 Aligned_cols=172 Identities=12% Similarity=0.097 Sum_probs=129.8
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~ 64 (185)
++++|++..| .....++++|+|+++++||+++|+|+||||||||+|++ |.| .++.+
T Consensus 472 I~~~nvsf~y---~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ 548 (709)
T COG2274 472 IEFENVSFRY---GPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ 548 (709)
T ss_pred EEEEEEEEEe---CCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh
Confidence 4555554433 22334799999999999999999999999999999999 443 44678
Q ss_pred hCceecCCCCCcc--h---------------hhHHHhhcCcc-----------cccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 65 IGCFVPCDSATIS--V---------------VDQIFTRVGAA-----------DSQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 65 ~g~~v~~~~~~~~--~---------------~~~~l~~~~l~-----------~~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
+| ||||++..++ + +.+++...+.. ....+.-..||||||||++|||++ .+
T Consensus 549 ig-~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 549 VG-YVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred ee-EEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 88 9999984433 1 22222333332 234466678999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++|||||||++|+...+.+.+.+ ..+. .|+|+|++||.....+.||++++|++|+++.+|+.++
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L-~~~~--~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNL-LQIL--QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHH-HHHh--cCCeEEEEEccchHhhhccEEEEccCCceeccCCHHH
Confidence 9999999996665555533333333 3333 3799999999999999999999999999999998765
No 270
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7.9e-35 Score=259.20 Aligned_cols=155 Identities=17% Similarity=0.124 Sum_probs=124.7
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCC---Ccch--------------
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSA---TISV-------------- 78 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~---~~~~-------------- 78 (185)
..++++||++++||+++|+||||||||||+|+| |.|.+...++ |+||+.. ..++
T Consensus 353 ~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~-y~~Q~~~~~~~~tv~e~l~~~~~~~~~~ 431 (590)
T PRK13409 353 FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-YKPQYIKPDYDGTVEDLLRSITDDLGSS 431 (590)
T ss_pred EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEE-EecccccCCCCCcHHHHHHHHhhhcChH
Confidence 358999999999999999999999999999999 4443333455 8888752 1121
Q ss_pred --hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEe
Q psy5297 79 --VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA 155 (185)
Q Consensus 79 --~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~ 155 (185)
..++++.+++.+..++++.+||||||||++||+++ .+|+++||||||+|+|......+.+.+ +.++++.+.|+|++
T Consensus 432 ~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l-~~l~~~~g~tviiv 510 (590)
T PRK13409 432 YYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAI-RRIAEEREATALVV 510 (590)
T ss_pred HHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHHhCCCEEEEE
Confidence 24567788888888999999999999999999999 999999999997777666655555544 66655458999999
Q ss_pred cCh-hHHHHhhccccceeeeeEEEEec
Q psy5297 156 THF-HEIALLSRVIPTFRNVHESKYLY 181 (185)
Q Consensus 156 tH~-~~~~~~~d~~~~l~~g~i~~~~~ 181 (185)
||| .++..+||++++|++ ++...+.
T Consensus 511 sHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 511 DHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred eCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999 778889999999965 7766654
No 271
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=5e-35 Score=232.18 Aligned_cols=150 Identities=22% Similarity=0.220 Sum_probs=119.8
Q ss_pred EeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------HHhhCceecCCCCC-----cc------------
Q psy5297 31 FKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------LAQIGCFVPCDSAT-----IS------------ 77 (185)
Q Consensus 31 l~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------~~~~g~~v~~~~~~-----~~------------ 77 (185)
|++++|++++|+||||||||||+|+| |.|.+ ..+++ |+||++.. .+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~-~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIG-YVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEE-EecccccccCCCCccHHHHHHhccccc
Confidence 56789999999999999999999999 43332 12345 88886521 11
Q ss_pred -------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHH
Q psy5297 78 -------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARE 143 (185)
Q Consensus 78 -------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~ 143 (185)
.+.++++.+++.+..++.+.+||+|||||++||+++ .+|+++|+||||+|+|+.....+.+.+ ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l-~~ 158 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF-IE 158 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HH
Confidence 123456677888788899999999999999999999 999999999997777777666666654 56
Q ss_pred HHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 144 LASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 144 l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++ .+.|+|++||+ .++.++||+++++ +|+++..++.++
T Consensus 159 ~~~-~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~ 198 (223)
T TIGR03771 159 LAG-AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQ 198 (223)
T ss_pred HHH-cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHH
Confidence 665 58999999999 7788999999999 799998877654
No 272
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-35 Score=257.45 Aligned_cols=167 Identities=16% Similarity=0.165 Sum_probs=126.8
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--HhhCceecCCCCC
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--AQIGCFVPCDSAT 75 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--~~~g~~v~~~~~~ 75 (185)
++++++...| +.+.+++|+||++++|++++|+||||||||||||+| |.|.+. ..++ |+||.+..
T Consensus 2 l~i~~ls~~~-----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~-~~~q~~~~ 75 (530)
T PRK15064 2 LSTANITMQF-----GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLG-KLRQDQFA 75 (530)
T ss_pred EEEEEEEEEe-----CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEeccCCc
Confidence 4566665443 235799999999999999999999999999999999 444443 2345 88886521
Q ss_pred c---c-----------------------------------------------------hhhHHHhhcCccccc-ccCcCc
Q psy5297 76 I---S-----------------------------------------------------VVDQIFTRVGAADSQ-YRGIST 98 (185)
Q Consensus 76 ~---~-----------------------------------------------------~~~~~l~~~~l~~~~-~~~~~~ 98 (185)
+ + .+.++++.+++.+.. ++++.+
T Consensus 76 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 155 (530)
T PRK15064 76 FEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSE 155 (530)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhh
Confidence 1 1 123455667776533 567899
Q ss_pred cHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297 99 FMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE 176 (185)
Q Consensus 99 lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i 176 (185)
||+|||||++||+++ .+|+++||||| |+.+|.....+. .+.+.+ .+.|||++||+ ..+.++||++++|++|++
T Consensus 156 LSgGq~qrv~lA~aL~~~p~lLlLDEP---t~~LD~~~~~~l-~~~l~~-~~~tiiivsHd~~~~~~~~d~i~~l~~g~i 230 (530)
T PRK15064 156 VAPGWKLRVLLAQALFSNPDILLLDEP---TNNLDINTIRWL-EDVLNE-RNSTMIIISHDRHFLNSVCTHMADLDYGEL 230 (530)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCC---CcccCHHHHHHH-HHHHHh-CCCeEEEEeCCHHHHHhhcceEEEEeCCEE
Confidence 999999999999999 99999999999 555555555443 245554 58999999999 778899999999999998
Q ss_pred E-EEeccC
Q psy5297 177 S-KYLYHT 183 (185)
Q Consensus 177 ~-~~~~~~ 183 (185)
+ +.++++
T Consensus 231 ~~~~g~~~ 238 (530)
T PRK15064 231 RVYPGNYD 238 (530)
T ss_pred EEecCCHH
Confidence 4 566543
No 273
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.6e-34 Score=257.58 Aligned_cols=158 Identities=11% Similarity=0.100 Sum_probs=121.2
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHH-------------HHHhhCceecCCCCCcc--h--
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSV-------------FLAQIGCFVPCDSATIS--V-- 78 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~-------------~~~~~g~~v~~~~~~~~--~-- 78 (185)
+++|+|+||++++|+.++|+||||||||||+++| |.|. ++.+++ ||||++..++ +
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~-~v~Q~~~LF~~TI~e 441 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLS-WVGQNPQLPHGTLRD 441 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheE-EecCCCcCCCcCHHH
Confidence 5799999999999999999999999999999999 4332 344566 9999984433 1
Q ss_pred -------------hhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297 79 -------------VDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG 133 (185)
Q Consensus 79 -------------~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~ 133 (185)
+.++++..++.+ ...+.-..||||||||++|||++ .+|+++||||||+++|....
T Consensus 442 NI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te 521 (588)
T PRK11174 442 NVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSE 521 (588)
T ss_pred HhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 233344444332 23344567999999999999999 99999999999666555554
Q ss_pred hHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 134 FGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 134 ~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
..+.+.+ ..+. .++|+|++||.....+.||+++++++|++++.|+.++
T Consensus 522 ~~i~~~l-~~~~--~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~e 569 (588)
T PRK11174 522 QLVMQAL-NAAS--RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAE 569 (588)
T ss_pred HHHHHHH-HHHh--CCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHH
Confidence 4444433 4443 4799999999977777899999999999999998664
No 274
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-34 Score=237.47 Aligned_cols=170 Identities=16% Similarity=0.157 Sum_probs=126.0
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHH-----------------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSV----------------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~----------------------- 60 (185)
.++++++...| +.+.+++++||++++|++++|+||||||||||+++| |...
T Consensus 45 ~l~i~nl~~~~-----~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 45 KLSVEDLDVYY-----GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred eEEEEEEEEEe-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 45555555433 235799999999999999999999999999999999 4321
Q ss_pred ----HHHhhCceecCCCCCc--chh----------------------------------hHHHhhcCcc----cccccCc
Q psy5297 61 ----FLAQIGCFVPCDSATI--SVV----------------------------------DQIFTRVGAA----DSQYRGI 96 (185)
Q Consensus 61 ----~~~~~g~~v~~~~~~~--~~~----------------------------------~~~l~~~~l~----~~~~~~~ 96 (185)
+...++ |+||.+..+ ++. .++++.+++. +..++++
T Consensus 120 ~~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 198 (305)
T PRK14264 120 NLVELRKRVG-MVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNA 198 (305)
T ss_pred cHHHHhhceE-EEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcc
Confidence 112344 888876321 211 1223334442 3457788
Q ss_pred CccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccc-cceee
Q psy5297 97 STFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVI-PTFRN 173 (185)
Q Consensus 97 ~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~-~~l~~ 173 (185)
.+||+||+||++||+++ .+|+++|||||++|+|+.....+.+.+ ..+++ +.|+|++||+ ..+..+||++ ++|++
T Consensus 199 ~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L-~~~~~--~~tiiivtH~~~~i~~~~d~i~~~l~~ 275 (305)
T PRK14264 199 LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLI-EELAE--EYTVVVVTHNMQQAARISDQTAVFLTG 275 (305)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc--CCEEEEEEcCHHHHHHhcCEEEEEecC
Confidence 99999999999999999 999999999997777666555554433 56654 4799999999 7778999996 57899
Q ss_pred eeEEEEeccC
Q psy5297 174 VHESKYLYHT 183 (185)
Q Consensus 174 g~i~~~~~~~ 183 (185)
|+++..++++
T Consensus 276 G~i~~~g~~~ 285 (305)
T PRK14264 276 GELVEYDDTD 285 (305)
T ss_pred CEEEEeCCHH
Confidence 9999887754
No 275
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-34 Score=212.68 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=138.3
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH--------------------------
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS-------------------------- 59 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i-------------------------- 59 (185)
+++++...-| |...+|.||+|+.+.|+.++++||+|+|||||+|.+...
T Consensus 3 irv~~in~~y-----g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i 77 (242)
T COG4161 3 IQLNGINCFY-----GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred eEEccccccc-----ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHH
Confidence 5566655434 346799999999999999999999999999999999211
Q ss_pred -HHHHhhCceecCCCCCcc-------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC
Q psy5297 60 -VFLAQIGCFVPCDSATIS-------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC 113 (185)
Q Consensus 60 -~~~~~~g~~v~~~~~~~~-------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l 113 (185)
.++..+| +|+|.....+ .+.++++++.+.+..++.+-.|||||+||++|||++
T Consensus 78 ~~lr~~vg-mvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaral 156 (242)
T COG4161 78 RDLRRNVG-MVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARAL 156 (242)
T ss_pred HHHHHhhh-hhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHH
Confidence 2345677 8998773332 245678888999999999999999999999999999
Q ss_pred -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
.+|+++++|||++.+||.-...+.. +++.+.. .|.|-+++||. .-..+.+.+++.|++|+|++.|+..
T Consensus 157 mmkpqvllfdeptaaldpeitaqvv~-iikel~~-tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 157 MMEPQVLLFDEPTAALDPEITAQIVS-IIKELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hcCCcEEeecCcccccCHHHHHHHHH-HHHHHHh-cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 9999999999966666554444444 3578876 79999999999 6677899999999999999999864
No 276
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=100.00 E-value=1.4e-33 Score=220.71 Aligned_cols=173 Identities=49% Similarity=0.795 Sum_probs=150.9
Q ss_pred EEcccCCceeeec-CCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhh
Q psy5297 7 VLNQCRHPIVELQ-GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 85 (185)
Q Consensus 7 ~~~~~~~~~l~~~-~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~ 85 (185)
++++++||+++.. ..+.++++|++++ +|++++|+||||||||||||+|+...+.++.|.|+|+....++..++++..
T Consensus 1 ~~~~~~~p~l~~~~~~~~~~~~~~~l~--~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~ 78 (202)
T cd03243 1 EIKGGRHPVLLALTKGETFVPNDINLG--SGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTR 78 (202)
T ss_pred CcccccCCEEeccccCCceEeeeEEEc--CCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEE
Confidence 3678999999853 3456899999886 689999999999999999999987778889999999988888888999988
Q ss_pred cCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297 86 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS 165 (185)
Q Consensus 86 ~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~ 165 (185)
++..+......++|+.+++|...++..+.+|+++|+|||++|+|+.+...+.+.+++.+.+ .+.++|++||+.++.+.+
T Consensus 79 ~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~~~~~~~~ 157 (202)
T cd03243 79 IGAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHFHELADLP 157 (202)
T ss_pred ecCcccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECChHHHHHHh
Confidence 9888888999999999999988887777999999999999999998887776666677776 589999999998888899
Q ss_pred ccccceeeeeEEEEecc
Q psy5297 166 RVIPTFRNVHESKYLYH 182 (185)
Q Consensus 166 d~~~~l~~g~i~~~~~~ 182 (185)
+++..++++++...++.
T Consensus 158 ~~~~~l~~~~~~~~~~~ 174 (202)
T cd03243 158 EQVPGVKNLHMEELITT 174 (202)
T ss_pred hcCCCeEEEEEEEEecC
Confidence 99999999999888764
No 277
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-35 Score=233.79 Aligned_cols=180 Identities=16% Similarity=0.071 Sum_probs=138.5
Q ss_pred ceEEEcccCCceeeecC--Cc--eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecC
Q psy5297 4 GTLVLNQCRHPIVELQG--GV--SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPC 71 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~--~~--~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~ 71 (185)
+.++++++..-|....+ .. ..+++||||++++||+++|+|.+||||||+-|+| |.|.+.++-..-+.
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 46888888775544221 11 3699999999999999999999999999999999 44444322210111
Q ss_pred CCCCcchhhHHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCC
Q psy5297 72 DSATISVVDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQ 149 (185)
Q Consensus 72 ~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~ 149 (185)
.......+.++++.+|+.+ ..++.+.+|||||+||+.||||+ .+|+++++|||+|.+|..-.+.+..+ +..++++.|
T Consensus 82 ~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnL-L~dlq~~~~ 160 (268)
T COG4608 82 KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNL-LKDLQEELG 160 (268)
T ss_pred hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHH-HHHHHHHhC
Confidence 1122345778889999864 68999999999999999999999 99999999999555544443444443 477777679
Q ss_pred CeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 150 PFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 150 ~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
.+.+++||| .-+..+|||+.+|..|+++..++.+++
T Consensus 161 lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~ 197 (268)
T COG4608 161 LTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEV 197 (268)
T ss_pred CeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHH
Confidence 999999999 667779999999999999999987653
No 278
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=257.28 Aligned_cols=172 Identities=13% Similarity=0.117 Sum_probs=126.3
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~ 64 (185)
++++|+...| .++.+++++|+||++++|+.++|+||||||||||+|+| |.|. ++.+
T Consensus 342 i~~~~vsf~y---~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 342 IEFRNVTFTY---PGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred EEEEEEEEec---CCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 5555554333 22336799999999999999999999999999999999 4332 2445
Q ss_pred hCceecCCCCCcc--h----------------hhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-C
Q psy5297 65 IGCFVPCDSATIS--V----------------VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 65 ~g~~v~~~~~~~~--~----------------~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
++ |+||++..++ + +.++++..++.+. ......+||||||||++|||++ .
T Consensus 419 i~-~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 419 VA-LVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred ce-EEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 56 9999973322 1 2233344443322 2233467999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+++||||||+++|+.....+.+.+ ..+. .++|+|++||+....+.||++++|++|++++.|+.++
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l-~~~~--~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAAL-DELQ--KNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHH-HHHh--CCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999996666555544444433 3443 3799999999977778899999999999999988654
No 279
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.6e-34 Score=261.88 Aligned_cols=172 Identities=12% Similarity=0.097 Sum_probs=129.3
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~ 64 (185)
++++|+...| .++.+++++|+||++++|+.++|+||||||||||+|+| |.| .++.+
T Consensus 464 I~~~~vsf~Y---~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 464 IEFRNVSFAY---PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred EEEEEEEEEe---CCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence 5555554433 22345799999999999999999999999999999999 433 23456
Q ss_pred hCceecCCCCCcc--h---------------hhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 65 IGCFVPCDSATIS--V---------------VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 65 ~g~~v~~~~~~~~--~---------------~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
++ |+||++..++ + +.++++..++.+. ..+....||||||||++|||++ .+
T Consensus 541 i~-~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~ 619 (694)
T TIGR03375 541 IG-YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619 (694)
T ss_pred cE-EECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 67 9999974332 1 2333444444332 2344567999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++||||||+++|+.....+.+.+ ..+. .++|+|++||+....+.||++++|++|++++.|+.++
T Consensus 620 p~iliLDE~Ts~LD~~te~~i~~~l-~~~~--~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~e 685 (694)
T TIGR03375 620 PPILLLDEPTSAMDNRSEERFKDRL-KRWL--AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQ 685 (694)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH-HHHh--CCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 9999999997776665555444433 4443 3799999999977778899999999999999998765
No 280
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.9e-34 Score=223.30 Aligned_cols=134 Identities=19% Similarity=0.228 Sum_probs=107.0
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------HHhhCceecCCCC--Cc-
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------LAQIGCFVPCDSA--TI- 76 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------~~~~g~~v~~~~~--~~- 76 (185)
+.+++++||++++|++++|+||||||||||+|+| |.|.+ ...++ |+||++. .+
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~ 83 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVG-LVFQDPDDQLFA 83 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEE-EEecChhhcccc
Confidence 5699999999999999999999999999999999 43321 22345 8998751 11
Q ss_pred -c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297 77 -S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG 133 (185)
Q Consensus 77 -~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~ 133 (185)
+ .+.++++.+++.+..++++.+||+||+||++||+++ .+|+++||||||+|+|+...
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 1 123456677888888999999999999999999999 99999999999777777665
Q ss_pred hHHHHHHHHHHHhcCCCeEEEecChh
Q psy5297 134 FGMACSIARELASNRQPFTLFATHFH 159 (185)
Q Consensus 134 ~~~~~~il~~l~~~~~~~vii~tH~~ 159 (185)
..+.+.+ ..+++ .+.|||++||+.
T Consensus 164 ~~~~~~l-~~~~~-~~~tili~sH~~ 187 (190)
T TIGR01166 164 EQMLAIL-RRLRA-EGMTVVISTHDV 187 (190)
T ss_pred HHHHHHH-HHHHH-cCCEEEEEeecc
Confidence 5555544 56665 589999999983
No 281
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=256.04 Aligned_cols=156 Identities=16% Similarity=0.127 Sum_probs=121.3
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--HhhCceecCCCC--C---cch--------
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--AQIGCFVPCDSA--T---ISV-------- 78 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--~~~g~~v~~~~~--~---~~~-------- 78 (185)
.+.+++|+||++++|++++|+||||||||||+|+| |.|.+. ..++ |+||++. . +++
T Consensus 331 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~-~~~q~~~~~~~~~~t~~~~~~~~~ 409 (530)
T PRK15064 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIG-YYAQDHAYDFENDLTLFDWMSQWR 409 (530)
T ss_pred CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEE-EEcccccccCCCCCcHHHHHHHhc
Confidence 35699999999999999999999999999999999 444332 2355 8888742 1 121
Q ss_pred --------hhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcC
Q psy5297 79 --------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNR 148 (185)
Q Consensus 79 --------~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~ 148 (185)
+.++++.+++. +..++++++||+|||||++||+++ .+|+++||||||+| +|...... +.+.+.+ .
T Consensus 410 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~---LD~~~~~~-l~~~l~~-~ 484 (530)
T PRK15064 410 QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNH---MDMESIES-LNMALEK-Y 484 (530)
T ss_pred cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCC---CCHHHHHH-HHHHHHH-C
Confidence 23456677774 567899999999999999999999 99999999999555 55444443 2244444 3
Q ss_pred CCeEEEecCh-hHHHHhhccccceeeeeEE-EEeccC
Q psy5297 149 QPFTLFATHF-HEIALLSRVIPTFRNVHES-KYLYHT 183 (185)
Q Consensus 149 ~~~vii~tH~-~~~~~~~d~~~~l~~g~i~-~~~~~~ 183 (185)
+.|||++||| .++..+||++++|++|+++ ..++++
T Consensus 485 ~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~ 521 (530)
T PRK15064 485 EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYE 521 (530)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHH
Confidence 5699999999 7788899999999999987 555543
No 282
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.1e-34 Score=228.84 Aligned_cols=155 Identities=14% Similarity=0.050 Sum_probs=112.5
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-HHHhhCceecCCC---CCcchhh------------
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-FLAQIGCFVPCDS---ATISVVD------------ 80 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-~~~~~g~~v~~~~---~~~~~~~------------ 80 (185)
+++|+||++++|++++|+||||||||||+|+| |.+. +..... .+.+.. ..+++.+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-~~~~~~~l~~~ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-PLGANSFILPGLTGEENARMMASLYGLD 80 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-ccccccccCCcCcHHHHHHHHHHHcCCC
Confidence 78999999999999999999999999999999 4443 221110 111111 1122111
Q ss_pred ------HHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEE
Q psy5297 81 ------QIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTL 153 (185)
Q Consensus 81 ------~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vi 153 (185)
.+...+++++..++++++||+|||||+++|+++ .+|+++|||||++++|+.....+.+.+.+.+ + +.++|
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~-~--~~~ii 157 (213)
T PRK15177 81 GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQL-Q--QKGLI 157 (213)
T ss_pred HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHh-h--CCcEE
Confidence 122334566667889999999999999999999 9999999999966665544444434332332 2 45799
Q ss_pred EecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 154 FATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 154 i~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
++||+ .++..+||++++|++|++++.++.+
T Consensus 158 ~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 188 (213)
T PRK15177 158 VLTHNPRLIKEHCHAFGVLLHGKITMCEDLA 188 (213)
T ss_pred EEECCHHHHHHhcCeeEEEECCeEEEeCCHH
Confidence 99999 7778899999999999999877543
No 283
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.3e-34 Score=224.38 Aligned_cols=158 Identities=18% Similarity=0.138 Sum_probs=119.9
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------HHHhhC
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------FLAQIG 66 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------~~~~~g 66 (185)
.++++++...| +++.+++|+||++++|++++|+||||||||||+++| |.|. +..+++
T Consensus 2 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVR-----GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACH 76 (207)
T ss_pred EEEEEeEEEEE-----CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcE
Confidence 36666766443 235799999999999999999999999999999999 4332 223455
Q ss_pred ceecCCCCC---cch-----------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297 67 CFVPCDSAT---ISV-----------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG 125 (185)
Q Consensus 67 ~~v~~~~~~---~~~-----------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~ 125 (185)
|+++.... .++ +.++++.+++.+..++++.+||+||+||++||+++ .+|+++|||||+
T Consensus 77 -~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 155 (207)
T PRK13539 77 -YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT 155 (207)
T ss_pred -EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 88765421 121 34566777887777889999999999999999999 999999999997
Q ss_pred CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccccee
Q psy5297 126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFR 172 (185)
Q Consensus 126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~ 172 (185)
+|+|+.....+.+.+ ..+++ .+.|+|++||+ .++.. |+++.+.
T Consensus 156 ~~LD~~~~~~l~~~l-~~~~~-~~~tiii~sH~~~~~~~--~~~~~~~ 199 (207)
T PRK13539 156 AALDAAAVALFAELI-RAHLA-QGGIVIAATHIPLGLPG--ARELDLG 199 (207)
T ss_pred ccCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCCchhhcc--CcEEeec
Confidence 776666655555544 55555 58999999999 55555 7776664
No 284
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.4e-34 Score=255.94 Aligned_cols=172 Identities=16% Similarity=0.094 Sum_probs=129.5
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~ 64 (185)
++++|++..| .++.+++++|+||++++|++++|+||||||||||+|+| |.|. ++.+
T Consensus 339 i~~~~v~f~y---~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 339 LTLNNVSFTY---PDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred EEEEEEEEEC---CCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 4455544333 22235799999999999999999999999999999999 4332 2445
Q ss_pred hCceecCCCCCcc-----------------hhhHHHhhcCccccccc----------CcCccHHHHHHHHHHHHhC-CCC
Q psy5297 65 IGCFVPCDSATIS-----------------VVDQIFTRVGAADSQYR----------GISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 65 ~g~~v~~~~~~~~-----------------~~~~~l~~~~l~~~~~~----------~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
++ |+||++..++ .+.++++..++.+..++ ....||||||||++|||++ .+|
T Consensus 416 i~-~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~ 494 (574)
T PRK11160 416 IS-VVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA 494 (574)
T ss_pred ee-EEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 66 9999983332 23445666676655443 5567999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++||||||+++|+.....+.+.+ ..+. .++|+|++||+......||++++|++|++++.|+.++
T Consensus 495 ~ililDE~ts~lD~~t~~~i~~~l-~~~~--~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~ 559 (574)
T PRK11160 495 PLLLLDEPTEGLDAETERQILELL-AEHA--QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQE 559 (574)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHH-HHHc--CCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHH
Confidence 999999996666665544444433 4443 3789999999955556799999999999999988754
No 285
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.8e-34 Score=221.18 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=118.5
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH------------HHHHhh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS------------VFLAQI 65 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i------------~~~~~~ 65 (185)
+++++++..+ +++.+++|+||++++|++++|+||||||||||+++| |.+ .+..++
T Consensus 2 l~~~~l~~~~-----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i 76 (200)
T PRK13540 2 LDVIELDFDY-----HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQL 76 (200)
T ss_pred EEEEEEEEEe-----CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhhe
Confidence 4566665443 235799999999999999999999999999999999 322 223455
Q ss_pred CceecCCCCC---cch----------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297 66 GCFVPCDSAT---ISV----------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG 125 (185)
Q Consensus 66 g~~v~~~~~~---~~~----------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~ 125 (185)
+ |+||.... .++ +.++++.+++.+..++++.+||+||+||++||+++ .+|+++|||||+
T Consensus 77 ~-~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~ 155 (200)
T PRK13540 77 C-FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL 155 (200)
T ss_pred E-EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 6 88886522 221 34466677777777888999999999999999999 999999999997
Q ss_pred CCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcccc
Q psy5297 126 RGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIP 169 (185)
Q Consensus 126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~ 169 (185)
+|+|+.....+.+.+ ..+++ .+.|+|++||+.....-||...
T Consensus 156 ~~LD~~~~~~l~~~l-~~~~~-~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 156 VALDELSLLTIITKI-QEHRA-KGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred cccCHHHHHHHHHHH-HHHHH-cCCEEEEEeCCchhccccchhh
Confidence 776666555555544 55555 5899999999966666677544
No 286
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-34 Score=217.64 Aligned_cols=133 Identities=18% Similarity=0.217 Sum_probs=102.6
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhCceecCCCCCcchhhHH
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIGCFVPCDSATISVVDQI 82 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g~~v~~~~~~~~~~~~~ 82 (185)
.+++|+||++++|++++|+||||||||||+|+| |.+.+ ...++ |+||++..++ ..+
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~~~~~~~~--~t~ 92 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA-YVPQDPFLFS--GTI 92 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE-EEcCCchhcc--chH
Confidence 699999999999999999999999999999999 32211 22344 7787763222 122
Q ss_pred HhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hH
Q psy5297 83 FTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HE 160 (185)
Q Consensus 83 l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~ 160 (185)
.+.+ ||+||+||+++|+++ .+|+++||||||+|+|+.....+.+.+ ..+.+ +.|+|++||+ .+
T Consensus 93 ~e~l------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l-~~~~~--~~tii~~sh~~~~ 157 (171)
T cd03228 93 RENI------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL-RALAK--GKTVIVIAHRLST 157 (171)
T ss_pred HHHh------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHH-HHhcC--CCEEEEEecCHHH
Confidence 2111 999999999999999 999999999997777766655555544 55543 6899999999 66
Q ss_pred HHHhhccccceeeee
Q psy5297 161 IALLSRVIPTFRNVH 175 (185)
Q Consensus 161 ~~~~~d~~~~l~~g~ 175 (185)
+.. ||++++|++|+
T Consensus 158 ~~~-~d~~~~l~~g~ 171 (171)
T cd03228 158 IRD-ADRIIVLDDGR 171 (171)
T ss_pred HHh-CCEEEEEcCCC
Confidence 665 99999999874
No 287
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.1e-34 Score=255.91 Aligned_cols=172 Identities=12% Similarity=0.120 Sum_probs=128.4
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~ 63 (185)
.++++++...|- + .+++++|+||++++|+.++|+|+||||||||+|+| |.| .++.
T Consensus 340 ~i~~~~v~f~y~---~-~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~ 415 (592)
T PRK10790 340 RIDIDNVSFAYR---D-DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQ 415 (592)
T ss_pred eEEEEEEEEEeC---C-CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHh
Confidence 355666554441 1 25699999999999999999999999999999999 443 2345
Q ss_pred hhCceecCCCCCcc----------------hhhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 64 QIGCFVPCDSATIS----------------VVDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 64 ~~g~~v~~~~~~~~----------------~~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
+++ |+||++..++ .+.++++..++.+. ..+....||||||||++|||++ .+
T Consensus 416 ~i~-~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~ 494 (592)
T PRK10790 416 GVA-MVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQT 494 (592)
T ss_pred heE-EEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 566 9999984443 23344555555432 2234467999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++||||||+++|+.....+.+.+ ..+. .++|+|++||+......||++++|++|++++.|++++
T Consensus 495 ~~illlDEpts~LD~~t~~~i~~~l-~~~~--~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 495 PQILILDEATANIDSGTEQAIQQAL-AAVR--EHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHH-HHHh--CCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999996665554444333333 3443 3689999999977777899999999999999998764
No 288
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.5e-34 Score=250.84 Aligned_cols=164 Identities=16% Similarity=0.169 Sum_probs=133.1
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH--hhCceecCCCC
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA--QIGCFVPCDSA 74 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~--~~g~~v~~~~~ 74 (185)
.+++.++...| +.+.+++|+||++.+|+.+||+|+||||||||||+| |.|.... .++ |++|++.
T Consensus 3 ~i~~~~ls~~~-----g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~-~l~Q~~~ 76 (530)
T COG0488 3 MITLENLSLAY-----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVG-YLSQEPP 76 (530)
T ss_pred eEEEeeeEEee-----CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEE-EeCCCCC
Confidence 45666666555 458899999999999999999999999999999999 5555543 456 9999874
Q ss_pred Ccc---h---------------------------------------------------hhHHHhhcCcccccccCcCccH
Q psy5297 75 TIS---V---------------------------------------------------VDQIFTRVGAADSQYRGISTFM 100 (185)
Q Consensus 75 ~~~---~---------------------------------------------------~~~~l~~~~l~~~~~~~~~~lS 100 (185)
..+ + +..++..+|+.+. ++++++||
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LS 155 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLS 155 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcC
Confidence 332 1 1233444555555 89999999
Q ss_pred HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297 101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK 178 (185)
Q Consensus 101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~ 178 (185)
||||.|++||++| .+|++|||||| |+++|..++.|+- ++|++-.| |+|+|||| .++..+|++++.+++|++..
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEP---TNHLD~~~i~WLe-~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~ 230 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEP---TNHLDLESIEWLE-DYLKRYPG-TVIVVSHDRYFLDNVATHILELDRGKLTP 230 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCC---CcccCHHHHHHHH-HHHHhCCC-cEEEEeCCHHHHHHHhhheEEecCCceeE
Confidence 9999999999999 99999999999 9999999998854 67766446 99999999 88999999999999998865
Q ss_pred Ee
Q psy5297 179 YL 180 (185)
Q Consensus 179 ~~ 180 (185)
+.
T Consensus 231 y~ 232 (530)
T COG0488 231 YK 232 (530)
T ss_pred ec
Confidence 43
No 289
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=5e-34 Score=242.54 Aligned_cols=170 Identities=18% Similarity=0.196 Sum_probs=137.4
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------- 61 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------- 61 (185)
+.+++++..+.|- .-.+.+||||++.+||+.+|+|.|||||||||++| |+|.+
T Consensus 3 ~~l~~~~itK~f~-----~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~ 77 (501)
T COG3845 3 PALEMRGITKRFP-----GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAI 77 (501)
T ss_pred ceEEEeccEEEcC-----CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHH
Confidence 4567777776663 35689999999999999999999999999999999 55543
Q ss_pred HHhhCceecCCCC---Ccch------------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297 62 LAQIGCFVPCDSA---TISV------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 62 ~~~~g~~v~~~~~---~~~~------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
...+| +|+|+.. .+++ +.++.+++|+.=..++++++||.|+|||++|.++|
T Consensus 78 ~~GIG-MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLy 156 (501)
T COG3845 78 RLGIG-MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALY 156 (501)
T ss_pred HcCCc-EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHh
Confidence 23456 8999873 3333 44556677887778999999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY 181 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~ 181 (185)
.+|++|||||||+=++|...+.+... ++.+++ .|+|||++||- .|+.++|||+.+|++|+++...+
T Consensus 157 r~a~iLILDEPTaVLTP~E~~~lf~~-l~~l~~-~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 157 RGARLLILDEPTAVLTPQEADELFEI-LRRLAA-EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHH-CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999555555444444443 578887 69999999997 99999999999999999987776
No 290
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6e-34 Score=251.95 Aligned_cols=173 Identities=19% Similarity=0.212 Sum_probs=126.8
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~ 64 (185)
++++|+...| .++.+++++|+||++++|+.++|+||||||||||+|+| |.+. ++.+
T Consensus 317 i~~~~v~~~y---~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 317 LSVENVTIVP---PGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred EEEEEEEEEc---CCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 5555554433 22335799999999999999999999999999999999 4332 2345
Q ss_pred hCceecCCCCCcc--hhhH---------------HHhh---------c--CcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 65 IGCFVPCDSATIS--VVDQ---------------IFTR---------V--GAADSQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 65 ~g~~v~~~~~~~~--~~~~---------------~l~~---------~--~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
++ |+||++..++ ..++ .++. + |++....+...+||||||||++|||++ .+
T Consensus 394 i~-~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 394 IG-YLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred eE-EecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 56 9999873322 1111 1222 2 223334556778999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++||||||+++|+.....+.+.+ ..+.. .++|+|++||+.+..+.||++++|++|+++..|++++
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l-~~~~~-~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~ 539 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAI-KALKA-RGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDE 539 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHH-HHHhh-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHH
Confidence 9999999996666665544444433 44443 4799999999965677899999999999999988654
No 291
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.5e-34 Score=217.89 Aligned_cols=137 Identities=14% Similarity=0.107 Sum_probs=106.0
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--HhhCceecCCCCC--cchhhHHHhhcCccc
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--AQIGCFVPCDSAT--ISVVDQIFTRVGAAD 90 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--~~~g~~v~~~~~~--~~~~~~~l~~~~l~~ 90 (185)
+.+++|+||++++|++++|+||||||||||+++| |.+.+. .+++ |+||++.. .++.+++.. .
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~-~~~q~~~~~~~tv~~nl~~--~--- 87 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLL-FLPQRPYLPLGTLREQLIY--P--- 87 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEE-EECCCCccccccHHHHhhc--c---
Confidence 5699999999999999999999999999999999 444442 2455 99998732 234444331 1
Q ss_pred ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcccc
Q psy5297 91 SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIP 169 (185)
Q Consensus 91 ~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~ 169 (185)
.+.+||+||+||+++||++ .+|+++|||||++++|+ ....+ +.+.+.+ .+.|+|++||+.+...+||+++
T Consensus 88 ----~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~---~~~~~-l~~~l~~-~~~tiiivsh~~~~~~~~d~i~ 158 (166)
T cd03223 88 ----WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE---ESEDR-LYQLLKE-LGITVISVGHRPSLWKFHDRVL 158 (166)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH---HHHHH-HHHHHHH-hCCEEEEEeCChhHHhhCCEEE
Confidence 5789999999999999999 99999999999555544 44333 2244444 3689999999955667999999
Q ss_pred ceeee
Q psy5297 170 TFRNV 174 (185)
Q Consensus 170 ~l~~g 174 (185)
+|+++
T Consensus 159 ~l~~~ 163 (166)
T cd03223 159 DLDGE 163 (166)
T ss_pred EEcCC
Confidence 99875
No 292
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=258.58 Aligned_cols=155 Identities=15% Similarity=0.070 Sum_probs=121.4
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--HhhCceecCCC-CCc----c---------
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--AQIGCFVPCDS-ATI----S--------- 77 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--~~~g~~v~~~~-~~~----~--------- 77 (185)
++.+++|+||++.+|++++|+||||||||||||+| |.|.+. ..++ |+||.. ..+ +
T Consensus 324 ~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig-y~~Q~~~~~l~~~~~~~~~~~~~~ 402 (638)
T PRK10636 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLG-YFAQHQLEFLRADESPLQHLARLA 402 (638)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEE-EecCcchhhCCccchHHHHHHHhC
Confidence 46799999999999999999999999999999999 554442 1355 888863 111 1
Q ss_pred ------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCC
Q psy5297 78 ------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQ 149 (185)
Q Consensus 78 ------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~ 149 (185)
.+..++..+++. +..++++++||||||||++||+++ .+|++|||||| |+++|....... .+.+.+ .+
T Consensus 403 ~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEP---t~~LD~~~~~~l-~~~L~~-~~ 477 (638)
T PRK10636 403 PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEP---TNHLDLDMRQAL-TEALID-FE 477 (638)
T ss_pred chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC---CCCCCHHHHHHH-HHHHHH-cC
Confidence 134567778885 467899999999999999999999 99999999999 555555544442 244444 34
Q ss_pred CeEEEecCh-hHHHHhhccccceeeeeEE-EEecc
Q psy5297 150 PFTLFATHF-HEIALLSRVIPTFRNVHES-KYLYH 182 (185)
Q Consensus 150 ~~vii~tH~-~~~~~~~d~~~~l~~g~i~-~~~~~ 182 (185)
.|||++||| .++..+||++++|++|+++ +.|+.
T Consensus 478 gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~ 512 (638)
T PRK10636 478 GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDL 512 (638)
T ss_pred CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCH
Confidence 599999999 7888999999999999997 55544
No 293
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=8.6e-34 Score=275.32 Aligned_cols=158 Identities=14% Similarity=0.148 Sum_probs=131.5
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhhCceecCCCCCc---c-
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQIGCFVPCDSATI---S- 77 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~g~~v~~~~~~~---~- 77 (185)
++.+++|+||++.+|++++|+||||||||||+|+| |.+. ++..+| |+||+...+ +
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG-~~pQ~~~L~~~LTV 1020 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG-MCPQHNILFHHLTV 1020 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE-EEecCCcCCCCCCH
Confidence 46799999999999999999999999999999999 3321 233456 999986322 2
Q ss_pred --------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHH
Q psy5297 78 --------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGM 136 (185)
Q Consensus 78 --------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~ 136 (185)
.++++++.+++.+..++++++||||||||++||+++ .+|+++||||||+|+|+.....+
T Consensus 1021 ~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l 1100 (2272)
T TIGR01257 1021 AEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI 1100 (2272)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence 134567888998889999999999999999999999 99999999999777777766666
Q ss_pred HHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 137 ACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 137 ~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
.+.+ ++++ .|.|||++||+ .++..+|||+++|++|++.+.|+++
T Consensus 1101 ~~lL-~~l~--~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~ 1145 (2272)
T TIGR01257 1101 WDLL-LKYR--SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPL 1145 (2272)
T ss_pred HHHH-HHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 5544 5554 38999999999 7888899999999999999988764
No 294
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-34 Score=255.22 Aligned_cols=162 Identities=17% Similarity=0.174 Sum_probs=125.0
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHh--hCceecCCCCC
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQ--IGCFVPCDSAT 75 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~--~g~~v~~~~~~ 75 (185)
+.++|++..| +.+.+++|+||++++|++++|+||||||||||||+| |.|.+... ++ |++|....
T Consensus 2 i~i~nls~~~-----g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~-~~~q~~~~ 75 (638)
T PRK10636 2 IVFSSLQIRR-----GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLA-WVNQETPA 75 (638)
T ss_pred EEEEEEEEEe-----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEecCCCC
Confidence 4556665444 346799999999999999999999999999999999 55544322 23 55553210
Q ss_pred c--------------------------------------------------chhhHHHhhcCcc-cccccCcCccHHHHH
Q psy5297 76 I--------------------------------------------------SVVDQIFTRVGAA-DSQYRGISTFMMEMK 104 (185)
Q Consensus 76 ~--------------------------------------------------~~~~~~l~~~~l~-~~~~~~~~~lS~g~~ 104 (185)
. ..+..+++.+|+. +..++++++||||||
T Consensus 76 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGer 155 (638)
T PRK10636 76 LPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWR 155 (638)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHH
Confidence 0 0123456667775 467889999999999
Q ss_pred HHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297 105 ETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK 178 (185)
Q Consensus 105 q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~ 178 (185)
||++||+++ .+|++|||||| |+++|.....++ .+.+.+ .+.|||+|||| .++..+||++++|++|++..
T Consensus 156 qRv~LA~aL~~~P~lLLLDEP---tn~LD~~~~~~L-~~~L~~-~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 156 MRLNLAQALICRSDLLLLDEP---TNHLDLDAVIWL-EKWLKS-YQGTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred HHHHHHHHHccCCCEEEEcCC---CCcCCHHHHHHH-HHHHHh-CCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 999999999 99999999999 666776766663 355655 57799999999 78889999999999999864
No 295
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=9.3e-34 Score=256.67 Aligned_cols=170 Identities=16% Similarity=0.154 Sum_probs=127.7
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~ 64 (185)
++++|++..| .++.+++++|+||++++|+.++|+||||||||||+|+| |.| .++.+
T Consensus 452 I~~~nvsf~Y---~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 452 IEVDRVTFRY---RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred EEEEEEEEEc---CCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 5555554433 22336799999999999999999999999999999999 444 23456
Q ss_pred hCceecCCCCCcc----------------hhhHHHhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 65 IGCFVPCDSATIS----------------VVDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 65 ~g~~v~~~~~~~~----------------~~~~~l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
++ |+||++..++ .+.++++..++.+.. ......||||||||++|||++ .+|
T Consensus 529 i~-~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p 607 (686)
T TIGR03797 529 LG-VVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP 607 (686)
T ss_pred cE-EEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 67 9999984332 123445555554332 234467999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++||||||++ +|...-.. +.+.+.+ .++|+|++||.....+.||++++|++|++++.|+.++
T Consensus 608 ~iLiLDEpTS~---LD~~te~~-i~~~L~~-~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~ 670 (686)
T TIGR03797 608 RILLFDEATSA---LDNRTQAI-VSESLER-LKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDE 670 (686)
T ss_pred CEEEEeCCccC---CCHHHHHH-HHHHHHH-hCCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999555 55443333 3355555 3689999999977677899999999999999998764
No 296
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.9e-34 Score=225.43 Aligned_cols=160 Identities=17% Similarity=0.115 Sum_probs=130.5
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhh-------CceecCCCCCc----------
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQI-------GCFVPCDSATI---------- 76 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~-------g~~v~~~~~~~---------- 76 (185)
..++|+||||++.+||.+||+|+||||||||+|+| |.+.+..++ .++-|+.....
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 45799999999999999999999999999999999 333222221 12444433111
Q ss_pred -------chhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH--HHHHHh
Q psy5297 77 -------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI--ARELAS 146 (185)
Q Consensus 77 -------~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i--l~~l~~ 146 (185)
..++++.+..++.++.+.|++++|.||+-|++++.+. .+|++||+||. ++..|........ ++.+.+
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEv---lavGD~~F~~K~~~rl~e~~~ 195 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEV---LAVGDAAFQEKCLERLNELVE 195 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehh---hhcCCHHHHHHHHHHHHHHHH
Confidence 1467778888899999999999999999999999999 99999999999 9999977666554 445544
Q ss_pred cCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 147 NRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 147 ~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
.+.|+|++||+ ..+.++||++++|++|++...|+++++
T Consensus 196 -~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~v 234 (249)
T COG1134 196 -KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEV 234 (249)
T ss_pred -cCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHH
Confidence 57999999999 889999999999999999999988753
No 297
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.3e-33 Score=250.75 Aligned_cols=159 Identities=13% Similarity=0.085 Sum_probs=120.9
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHhhCceecCCCCCcc---
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQIGCFVPCDSATIS--- 77 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~~g~~v~~~~~~~~--- 77 (185)
++++++|+||++++|++++|+|+||||||||+|+| |.|. ++.+++ |+||++..++
T Consensus 344 ~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~-~v~Q~~~lf~~Ti 422 (571)
T TIGR02203 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA-LVSQDVVLFNDTI 422 (571)
T ss_pred CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce-EEccCcccccccH
Confidence 35799999999999999999999999999999999 3332 234556 9999873222
Q ss_pred ---------------hhhHHHhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCc
Q psy5297 78 ---------------VVDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTST 130 (185)
Q Consensus 78 ---------------~~~~~l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~ 130 (185)
.+.++++..++.+.. ...-..||||||||++|||++ .+|++++|||||+++|.
T Consensus 423 ~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~ 502 (571)
T TIGR02203 423 ANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDN 502 (571)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 123345555554322 233457999999999999999 99999999999666555
Q ss_pred CChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 131 FDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 131 ~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.....+.+.+ ..+. .++|+|++||+......||+++++++|++...++.++
T Consensus 503 ~~~~~i~~~L-~~~~--~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 503 ESERLVQAAL-ERLM--QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred HHHHHHHHHH-HHHh--CCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 5544444333 3333 3799999999988888999999999999998887654
No 298
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.3e-34 Score=213.50 Aligned_cols=155 Identities=19% Similarity=0.265 Sum_probs=128.7
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHhhCceecCCCCCcc--
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQIGCFVPCDSATIS-- 77 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~~g~~v~~~~~~~~-- 77 (185)
+...+|+++||++++||+++|+||+|||||||+|++ |.+. ++.++. |+.|.+..++
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~Vs-Y~~Q~paLfg~t 92 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVS-YCAQTPALFGDT 92 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHH-HHHcCccccccc
Confidence 456899999999999999999999999999999999 3332 244555 8888764433
Q ss_pred -------------------hhhHHHhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHH
Q psy5297 78 -------------------VVDQIFTRVGAADS-QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGM 136 (185)
Q Consensus 78 -------------------~~~~~l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~ 136 (185)
.+..+++++++.+. +.+++.+||||++||++++|.| .-|+++||||||+.+|+-....+
T Consensus 93 VeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~i 172 (223)
T COG4619 93 VEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172 (223)
T ss_pred hhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHH
Confidence 35567888998764 6889999999999999999999 99999999999888777777777
Q ss_pred HHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEE
Q psy5297 137 ACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHES 177 (185)
Q Consensus 137 ~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~ 177 (185)
...+.+..++ ++..++++||| .+..+.+|+++.+..|++-
T Consensus 173 e~mi~~~v~~-q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 173 EEMIHRYVRE-QNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred HHHHHHHhhh-hceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 6666555554 78999999999 7889999999999998863
No 299
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.9e-33 Score=219.10 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=106.4
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHhhCceecCCCCC---cc-
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQIGCFVPCDSAT---IS- 77 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~~g~~v~~~~~~---~~- 77 (185)
.+.+++|+||++++|++++|+||||||||||+|+| |.+.+ ..+++ |+||.... .+
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv 90 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNIL-YLGHLPGLKPELSA 90 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheE-EeccCcccccCCcH
Confidence 36799999999999999999999999999999999 33321 23445 88876522 12
Q ss_pred ----------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH
Q psy5297 78 ----------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI 140 (185)
Q Consensus 78 ----------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i 140 (185)
.+.++++.+++.+..++++.+||+||+||++||+++ .+|++++||||++|+|......+.+.+
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 170 (198)
T TIGR01189 91 LENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLL 170 (198)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 134456778888888999999999999999999999 999999999997777666555554444
Q ss_pred HHHHHhcCCCeEEEecChh
Q psy5297 141 ARELASNRQPFTLFATHFH 159 (185)
Q Consensus 141 l~~l~~~~~~~vii~tH~~ 159 (185)
..+++ .+.|+|++||+.
T Consensus 171 -~~~~~-~~~tii~~sH~~ 187 (198)
T TIGR01189 171 -RAHLA-RGGIVLLTTHQD 187 (198)
T ss_pred -HHHHh-CCCEEEEEEccc
Confidence 55555 588999999974
No 300
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.4e-33 Score=251.55 Aligned_cols=158 Identities=17% Similarity=0.139 Sum_probs=120.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHhhCceecCCCCCcc--h-
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQIGCFVPCDSATIS--V- 78 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~~g~~v~~~~~~~~--~- 78 (185)
+++++|+||++++|++++|+|+||||||||+|+| |.| .++.+++ |+||++..++ .
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~-~v~Q~~~lf~~Ti~ 426 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA-VVFQDAGLFNRSIE 426 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE-EEecCcccccccHH
Confidence 5699999999999999999999999999999999 433 2345566 9999983332 1
Q ss_pred --------------hhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297 79 --------------VDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD 132 (185)
Q Consensus 79 --------------~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d 132 (185)
+.++++..++.+ ........||||||||++|||++ .+|+++||||||+++|+..
T Consensus 427 ~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t 506 (588)
T PRK13657 427 DNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET 506 (588)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 223334444332 22334557999999999999999 9999999999966666655
Q ss_pred hhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 133 GFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 133 ~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
...+.+.+ ..+. .++|+|++||+....+.||++++|++|++...|+.++
T Consensus 507 ~~~i~~~l-~~~~--~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 507 EAKVKAAL-DELM--KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HHHHHHHH-HHHh--cCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 44444433 3333 3799999999977778899999999999999887653
No 301
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.5e-34 Score=224.74 Aligned_cols=150 Identities=10% Similarity=0.076 Sum_probs=112.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------------HHhhCceecCCCCCc-
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------------LAQIGCFVPCDSATI- 76 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------------~~~~g~~v~~~~~~~- 76 (185)
..+++|+||++++|++++|+|||||||||||++| |.|.+ ...++ |+||++..+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~ 92 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVA-YAAQKPWLLN 92 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEE-EEcCCCcccc
Confidence 5699999999999999999999999999999999 32211 12244 888886322
Q ss_pred -chh--------------hHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCC
Q psy5297 77 -SVV--------------DQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTS 129 (185)
Q Consensus 77 -~~~--------------~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~ 129 (185)
++. .++++.+++.+. .+.++.+||+||+||++||+++ .+|+++|||||++|+|
T Consensus 93 ~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 172 (218)
T cd03290 93 ATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172 (218)
T ss_pred ccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccC
Confidence 221 223333443322 2457889999999999999999 9999999999977777
Q ss_pred cCChhHHHHH-HHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297 130 TFDGFGMACS-IARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH 175 (185)
Q Consensus 130 ~~d~~~~~~~-il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~ 175 (185)
+.....+.+. +++.+++ .+.|+|++||+ ..+ ..||++++|++|.
T Consensus 173 ~~~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 173 IHLSDHLMQEGILKFLQD-DKRTLVLVTHKLQYL-PHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCEEEEEeCChHHH-hhCCEEEEecCCC
Confidence 6665555552 4455554 58999999999 555 5799999998874
No 302
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.5e-33 Score=254.66 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=121.6
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHhhCceecCCCCCcc--h
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQIGCFVPCDSATIS--V 78 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~~g~~v~~~~~~~~--~ 78 (185)
.+++++|+||++++|+.++|+||||||||||+|+| |.| .++.+++ |+||++..++ +
T Consensus 491 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~-~v~Q~~~lf~gTi 569 (710)
T TIGR03796 491 EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA-MVDQDIFLFEGTV 569 (710)
T ss_pred CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee-EEecCChhhhccH
Confidence 35799999999999999999999999999999999 433 2356677 9999984332 1
Q ss_pred ---------------hhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcC
Q psy5297 79 ---------------VDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTF 131 (185)
Q Consensus 79 ---------------~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~ 131 (185)
+.++++..++.+ ...+....||||||||++|||++ .+|+++||||||++ +
T Consensus 570 ~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~---L 646 (710)
T TIGR03796 570 RDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSA---L 646 (710)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECcccc---C
Confidence 223344444432 23344567999999999999999 99999999999554 5
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 132 d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|...-.. +.+.+.+ .++|+|++||.......||++++|++|++++.|++++
T Consensus 647 D~~te~~-i~~~l~~-~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 647 DPETEKI-IDDNLRR-RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred CHHHHHH-HHHHHHh-cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHH
Confidence 5443333 3355655 5899999999976677799999999999999998765
No 303
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1e-33 Score=250.93 Aligned_cols=168 Identities=14% Similarity=0.102 Sum_probs=125.4
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--HhhCceecCCC
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--AQIGCFVPCDS 73 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--~~~g~~v~~~~ 73 (185)
..++++|+...|- +.+.+++|+||++++|++++|+||||||||||||+| |.|.+. ..++ |+||.+
T Consensus 3 ~~i~~~nls~~~~----~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~-~v~Q~~ 77 (552)
T TIGR03719 3 YIYTMNRVSKVVP----PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVG-YLPQEP 77 (552)
T ss_pred EEEEEeeEEEecC----CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEeccC
Confidence 4577777765541 135799999999999999999999999999999999 544442 2355 999986
Q ss_pred CC---cchhhHH---------------------------------------------------------HhhcCcccccc
Q psy5297 74 AT---ISVVDQI---------------------------------------------------------FTRVGAADSQY 93 (185)
Q Consensus 74 ~~---~~~~~~~---------------------------------------------------------l~~~~l~~~~~ 93 (185)
.. +++.+.+ ++.+++. ..+
T Consensus 78 ~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~ 156 (552)
T TIGR03719 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWD 156 (552)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-ccc
Confidence 32 2332222 1222332 247
Q ss_pred cCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccce
Q psy5297 94 RGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTF 171 (185)
Q Consensus 94 ~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l 171 (185)
+++++||+|||||++||+++ .+|+++||||| |+.+|.....+.. +.+.+ .+.|||++||+ ..+..+||++++|
T Consensus 157 ~~~~~LSgGqkqrv~la~al~~~p~lLLLDEP---t~~LD~~~~~~l~-~~L~~-~~~tvIiisHd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEP---TNHLDAESVAWLE-QHLQE-YPGTVVAVTHDRYFLDNVAGWILEL 231 (552)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCC---CCCCChHHHHHHH-HHHHh-CCCeEEEEeCCHHHHHhhcCeEEEE
Confidence 78999999999999999999 99999999999 5555655555432 45554 35699999999 7888899999999
Q ss_pred eeeeEE-EEecc
Q psy5297 172 RNVHES-KYLYH 182 (185)
Q Consensus 172 ~~g~i~-~~~~~ 182 (185)
++|+++ +.|+.
T Consensus 232 ~~g~i~~~~g~~ 243 (552)
T TIGR03719 232 DRGRGIPWEGNY 243 (552)
T ss_pred ECCEEEEecCCH
Confidence 999975 55554
No 304
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-33 Score=219.44 Aligned_cols=170 Identities=20% Similarity=0.176 Sum_probs=132.2
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH----------HHHHH------------H
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI----------GVSVF------------L 62 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i----------G~i~~------------~ 62 (185)
.++++|++.. +.+ ++.+|+++|+++++||+.+|.||||||||||.++| |.|.+ +
T Consensus 3 ~L~I~dLhv~---v~~-~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ER 78 (251)
T COG0396 3 MLEIKDLHVE---VEG-KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78 (251)
T ss_pred eeEEeeeEEE---ecC-chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHH
Confidence 5677777432 221 25899999999999999999999999999999999 55433 4
Q ss_pred HhhCc-eecCCCCCcc---------------------------hhhHHHhhcCccc-ccccCcC-ccHHHHHHHHHHHHh
Q psy5297 63 AQIGC-FVPCDSATIS---------------------------VVDQIFTRVGAAD-SQYRGIS-TFMMEMKETATVIKK 112 (185)
Q Consensus 63 ~~~g~-~v~~~~~~~~---------------------------~~~~~l~~~~l~~-~~~~~~~-~lS~g~~q~~~ia~~ 112 (185)
+..|. ..+|.|..++ .+++.++.+++++ +++|.+. .||||+|+|..|+++
T Consensus 79 Ar~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~ 158 (251)
T COG0396 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQL 158 (251)
T ss_pred HhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHH
Confidence 55664 3477765444 1334556677765 6778775 599999999999999
Q ss_pred C-CCCeEEEEeCCCCCCCcCChhHHHHH--HHHHHHhcCCCeEEEecChhHHHHhh--ccccceeeeeEEEEecc
Q psy5297 113 C-TENSLVIIDELGRGTSTFDGFGMACS--IARELASNRQPFTLFATHFHEIALLS--RVIPTFRNVHESKYLYH 182 (185)
Q Consensus 113 l-~~p~llllDEP~~g~~~~d~~~~~~~--il~~l~~~~~~~vii~tH~~~~~~~~--d~~~~l~~g~i~~~~~~ 182 (185)
+ .+|++.|||||=||+ |..++... .++.+++ .+.+++++||+..+..+. |++.+|.+|+|+..|++
T Consensus 159 ~~lePkl~ILDE~DSGL---DIdalk~V~~~i~~lr~-~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 159 LLLEPKLAILDEPDSGL---DIDALKIVAEGINALRE-EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HhcCCCEEEecCCCcCc---cHHHHHHHHHHHHHHhc-CCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH
Confidence 9 999999999995554 54544332 2588877 699999999998887765 99999999999999987
No 305
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=5.3e-34 Score=256.68 Aligned_cols=160 Identities=18% Similarity=0.227 Sum_probs=126.9
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH---------HH---------HHHhhCceecCCCCCc---ch-
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV---------SV---------FLAQIGCFVPCDSATI---SV- 78 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~---------i~---------~~~~~g~~v~~~~~~~---~~- 78 (185)
++.+++|+|+++++||+++|+||||||||||||+| |. |. ...+++ |++|++..+ ++
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~-yv~Q~~~l~~~lTV~ 158 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTG-FVTQDDILYPHLTVR 158 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceE-EECcccccCCcCCHH
Confidence 46799999999999999999999999999999999 22 11 122345 999876322 21
Q ss_pred -----------------------hhHHHhhcCccccc-----ccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCC
Q psy5297 79 -----------------------VDQIFTRVGAADSQ-----YRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTS 129 (185)
Q Consensus 79 -----------------------~~~~l~~~~l~~~~-----~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~ 129 (185)
++++++.+|+.+.. ++.++.||+|||||++||+++ .+|++++|||||+|+|
T Consensus 159 E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD 238 (659)
T PLN03211 159 ETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238 (659)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcC
Confidence 33456667776554 345678999999999999999 9999999999977777
Q ss_pred cCChhHHHHHHHHHHHhcCCCeEEEecCh-h-HHHHhhccccceeeeeEEEEeccCC
Q psy5297 130 TFDGFGMACSIARELASNRQPFTLFATHF-H-EIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 130 ~~d~~~~~~~il~~l~~~~~~~vii~tH~-~-~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
......+.+.+ +.+++ .|.|||++||+ . ++.+++|++++|++|++++.|+.++
T Consensus 239 ~~~~~~l~~~L-~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~ 293 (659)
T PLN03211 239 ATAAYRLVLTL-GSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSD 293 (659)
T ss_pred HHHHHHHHHHH-HHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHH
Confidence 76655555544 66766 58999999998 4 5789999999999999999988654
No 306
>KOG0057|consensus
Probab=100.00 E-value=8.3e-34 Score=243.42 Aligned_cols=171 Identities=17% Similarity=0.158 Sum_probs=131.2
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHHH-------------HHhh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSVF-------------LAQI 65 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~~-------------~~~~ 65 (185)
+++.|+...+. .++++|+++||+|++|+.+||+|+|||||||++|+| |.|.+ +.-+
T Consensus 352 I~F~dV~f~y~----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 352 IEFDDVHFSYG----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred EEEEeeEEEeC----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhe
Confidence 44555544332 245699999999999999999999999999999999 54432 3344
Q ss_pred CceecCCCCCcc-----------------hhhHHHhhcCcccccc-----------cCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 66 GCFVPCDSATIS-----------------VVDQIFTRVGAADSQY-----------RGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 66 g~~v~~~~~~~~-----------------~~~~~l~~~~l~~~~~-----------~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
| ||||+...+. .+-++++++++.|... .+-..||||||||+++||++ .+|
T Consensus 428 g-~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda 506 (591)
T KOG0057|consen 428 G-VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA 506 (591)
T ss_pred e-EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence 5 9999984433 2445667777765432 33456999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++++|||||.+|.....++.+.+.. . ..++|+|++-|+.....-||+|+++++|++...|+.++
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~-~--~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~e 571 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMD-V--MSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSE 571 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHH-h--cCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHH
Confidence 99999999666555554444444422 2 35899999999999999999999999999999998765
No 307
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=1.8e-32 Score=216.72 Aligned_cols=177 Identities=45% Similarity=0.712 Sum_probs=149.4
Q ss_pred EEcccCCceeeecC-CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhh
Q psy5297 7 VLNQCRHPIVELQG-GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 85 (185)
Q Consensus 7 ~~~~~~~~~l~~~~-~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~ 85 (185)
++++++||+++..- ..+++++|++++.++ ++++|+||||||||||||++|.+.+.++.|.++|+....++.+++++.+
T Consensus 1 ~i~~~~hp~~~~~~~~~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~ 79 (216)
T cd03284 1 EIEGGRHPVVEQVLDNEPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTR 79 (216)
T ss_pred CcccccCCEEeeccCCCceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEecc
Confidence 36889999998643 357899999999876 9999999999999999999999899999999999888778878888877
Q ss_pred cCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297 86 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS 165 (185)
Q Consensus 86 ~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~ 165 (185)
++..+......++|..++++...+...+.+|+++|||||++||+++|+..+.+.+++.+.+..+.++|++||+.++.+++
T Consensus 80 ~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~ 159 (216)
T cd03284 80 IGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELE 159 (216)
T ss_pred CCchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHh
Confidence 77766666666777666666666666568999999999999999999988777777888763388999999998899999
Q ss_pred ccccceeeeeEEEEeccCC
Q psy5297 166 RVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 166 d~~~~l~~g~i~~~~~~~~ 184 (185)
|++..++++++....+.++
T Consensus 160 ~~~~~v~~~~~~~~~~~~~ 178 (216)
T cd03284 160 GKLPRVKNFHVAVKEKGGG 178 (216)
T ss_pred hcCCCeEEEEEEEEeeCCe
Confidence 9999999999987776554
No 308
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1e-32 Score=219.54 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=114.0
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHH-HHH---HHHHHHH--------hhC-c--------------eecCCCC
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYI-RSI---GVSVFLA--------QIG-C--------------FVPCDSA 74 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLl-k~i---G~i~~~~--------~~g-~--------------~v~~~~~ 74 (185)
...+++++||++++||+++|+||||||||||+ ..+ |.+.+.. ..+ . +.++++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKT 86 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCC
Confidence 35699999999999999999999999999996 444 4433210 010 0 1111110
Q ss_pred -----Ccc---------------------hhhHHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCC--eEEEEeCC
Q psy5297 75 -----TIS---------------------VVDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TEN--SLVIIDEL 124 (185)
Q Consensus 75 -----~~~---------------------~~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p--~llllDEP 124 (185)
... ...++++.+++.+ ..++++.+||+||+||+++|+++ .+| +++|||||
T Consensus 87 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEP 166 (226)
T cd03270 87 TSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEP 166 (226)
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 001 0113445567765 47899999999999999999999 887 59999999
Q ss_pred CCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce------eeeeEEEEe
Q psy5297 125 GRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF------RNVHESKYL 180 (185)
Q Consensus 125 ~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l------~~g~i~~~~ 180 (185)
++|+|+.....+.+.+ ..+++ .|.|+|++||+.+...+||++++| ++|+++++|
T Consensus 167 t~gLD~~~~~~l~~~l-~~~~~-~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 167 SIGLHPRDNDRLIETL-KRLRD-LGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred ccCCCHHHHHHHHHHH-HHHHh-CCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 7777666655555544 56655 589999999994445799999999 999998764
No 309
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=6.6e-33 Score=246.49 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=126.6
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~ 64 (185)
++++|+...|-. +.++++++|+||++++||.++|+||||||||||+|+| |.|. ++.+
T Consensus 338 i~~~~v~f~y~~--~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 338 IEFEQVNFAYPA--RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred EEEEEEEEECCC--CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 555555443321 1125799999999999999999999999999999999 4332 2345
Q ss_pred hCceecCCCCCcc-----------------hhhHHHhhcCcc-----------cccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 65 IGCFVPCDSATIS-----------------VVDQIFTRVGAA-----------DSQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 65 ~g~~v~~~~~~~~-----------------~~~~~l~~~~l~-----------~~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
++ |+||++..++ .+.++++..++. ....+....||||||||+++||++ .+
T Consensus 416 i~-~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~ 494 (576)
T TIGR02204 416 MA-LVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD 494 (576)
T ss_pred ce-EEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 66 9999883322 122333444432 223345567999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++||||||+++|+.....+.+.+ ..+. .++|+|++||+.+....||+++++++|++++.|++++
T Consensus 495 ~~ililDEpts~lD~~~~~~i~~~l-~~~~--~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~ 560 (576)
T TIGR02204 495 APILLLDEATSALDAESEQLVQQAL-ETLM--KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAE 560 (576)
T ss_pred CCeEEEeCcccccCHHHHHHHHHHH-HHHh--CCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHH
Confidence 9999999996666665544443433 4443 3799999999977778899999999999999887653
No 310
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=7.5e-33 Score=245.54 Aligned_cols=156 Identities=13% Similarity=0.096 Sum_probs=121.6
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHhhCceecCCCCCcc----
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQIGCFVPCDSATIS---- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~~g~~v~~~~~~~~---- 77 (185)
+++++|+||++++|++++|+||||||||||+++| |.| .++.+++ |++|++..++
T Consensus 355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~-~v~q~~~lf~~ti~ 433 (555)
T TIGR01194 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFS-AIFADFHLFDDLIG 433 (555)
T ss_pred CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCc-EEccChhhhhhhhh
Confidence 3699999999999999999999999999999999 433 2345566 9999863221
Q ss_pred ----------hhhHHHhhcCcccccccC------cCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH
Q psy5297 78 ----------VVDQIFTRVGAADSQYRG------ISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI 140 (185)
Q Consensus 78 ----------~~~~~l~~~~l~~~~~~~------~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i 140 (185)
.+.++++.+++.+..+.. ..+||||||||++|||++ .+|+++||||||+++|+.....+.+.+
T Consensus 434 ~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 434 PDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred cccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 234567777776654332 367999999999999999 999999999997766665555444444
Q ss_pred HHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEe
Q psy5297 141 ARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYL 180 (185)
Q Consensus 141 l~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~ 180 (185)
++.++. .+.|+|++||+.+..+.||++++|++|++++.-
T Consensus 514 ~~~~~~-~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 514 LPDLKR-QGKTIIIISHDDQYFELADQIIKLAAGCIVKDT 552 (555)
T ss_pred HHHHHh-CCCEEEEEeccHHHHHhCCEEEEEECCEEEEec
Confidence 344444 589999999996677899999999999997654
No 311
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.3e-33 Score=253.20 Aligned_cols=171 Identities=14% Similarity=0.086 Sum_probs=125.0
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~ 64 (185)
++++|+...|-. +.++++++|+||++++|+.++|+||||||||||+|+| |.|. ++.+
T Consensus 479 I~~~nVsf~Y~~--~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 479 IEFQDVSFSYPN--RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred EEEEEEEEECCC--CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 555555443321 1235799999999999999999999999999999999 4332 2455
Q ss_pred hCceecCCCCCcc-----------------hhhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 65 IGCFVPCDSATIS-----------------VVDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 65 ~g~~v~~~~~~~~-----------------~~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
++ |+||++..++ .+.++++..++.+. ......+||||||||++|||++ .+
T Consensus 557 i~-~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~ 635 (711)
T TIGR00958 557 VA-LVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRK 635 (711)
T ss_pred ce-EEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 66 9999984332 12334444444322 2334467999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++||||||++ +|.+.- ..+.+ .....++|+|++||..+..+.||++++|++|++++.|++++
T Consensus 636 p~ILILDEpTSa---LD~~te-~~i~~-~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~e 699 (711)
T TIGR00958 636 PRVLILDEATSA---LDAECE-QLLQE-SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQ 699 (711)
T ss_pred CCEEEEEccccc---cCHHHH-HHHHH-hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHH
Confidence 999999999555 554332 22323 32225899999999966677899999999999999998765
No 312
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=7e-33 Score=245.30 Aligned_cols=156 Identities=13% Similarity=0.086 Sum_probs=121.3
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHhhCceecCCCCCcc----
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQIGCFVPCDSATIS---- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~~g~~v~~~~~~~~---- 77 (185)
+++++|+||++++|+.++|+||||||||||+++| |.| .++.+++ |+||++..++
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~lf~~ti~ 414 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS-AVFTDFHLFDQLLG 414 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE-EEecChhHHHHhhc
Confidence 4699999999999999999999999999999999 433 2345566 9999873221
Q ss_pred ---------hhhHHHhhcCcccccccC-----cCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHH
Q psy5297 78 ---------VVDQIFTRVGAADSQYRG-----ISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAR 142 (185)
Q Consensus 78 ---------~~~~~l~~~~l~~~~~~~-----~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~ 142 (185)
.+.++++.+++.+....+ ..+||||||||++|||++ .+|+++||||||+++|+.....+.+.+.+
T Consensus 415 ~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~ 494 (547)
T PRK10522 415 PEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLP 494 (547)
T ss_pred cccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 234456677776543322 358999999999999999 99999999999777666655544444433
Q ss_pred HHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEe
Q psy5297 143 ELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYL 180 (185)
Q Consensus 143 ~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~ 180 (185)
.+++ .+.|+|++||+.+....||++++|++|++.+..
T Consensus 495 ~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 495 LLQE-MGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHh-CCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence 3333 489999999997777899999999999998664
No 313
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.4e-33 Score=252.57 Aligned_cols=172 Identities=15% Similarity=0.135 Sum_probs=126.7
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~ 64 (185)
+++++++..| .++.+.+++|+||++++|+.++|+|+||||||||+|+| |.| .++.+
T Consensus 456 i~~~~vsf~y---~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 456 ITFENIRFRY---APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred EEEEEEEEEc---CCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence 4445544332 22335699999999999999999999999999999999 433 23455
Q ss_pred hCceecCCCCCcc--h---------------hhHHHhhcCcc-----------cccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 65 IGCFVPCDSATIS--V---------------VDQIFTRVGAA-----------DSQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 65 ~g~~v~~~~~~~~--~---------------~~~~l~~~~l~-----------~~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
++ |+||++..++ + +.++++..++. ....+...+||||||||+++||++ .+
T Consensus 533 i~-~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~ 611 (694)
T TIGR01846 533 MG-VVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN 611 (694)
T ss_pred Ce-EEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 66 9999873332 1 22233333332 233455678999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++||||||+++|+.....+.+.+ ..+. .++|+|++||+.+....||++++|++|++++.|+.++
T Consensus 612 ~~ililDEpts~LD~~~~~~i~~~l-~~~~--~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~ 677 (694)
T TIGR01846 612 PRILIFDEATSALDYESEALIMRNM-REIC--RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEE 677 (694)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHH-HHHh--CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999996666665544444433 4443 4799999999955566799999999999999988654
No 314
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.6e-33 Score=208.57 Aligned_cols=120 Identities=16% Similarity=0.138 Sum_probs=94.6
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH-------HHHHH--hhCceecCCCCCcchhhHHHhhcCccccc
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV-------SVFLA--QIGCFVPCDSATISVVDQIFTRVGAADSQ 92 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~-------i~~~~--~~g~~v~~~~~~~~~~~~~l~~~~l~~~~ 92 (185)
..+++++||++++|++++|+||||||||||+++| |. +.+.. .++ |+||
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~-~~~~--------------------- 70 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIG-YFEQ--------------------- 70 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEE-EEcc---------------------
Confidence 4699999999999999999999999999999999 32 22211 112 3333
Q ss_pred ccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccc
Q psy5297 93 YRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPT 170 (185)
Q Consensus 93 ~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~ 170 (185)
||+||+||++|||++ .+|+++|||||++|+|......+. +.+++ .+.|++++||+ .++.++||++++
T Consensus 71 ------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~----~~l~~-~~~til~~th~~~~~~~~~d~v~~ 139 (144)
T cd03221 71 ------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE----EALKE-YPGTVILVSHDRYFLDQVATKIIE 139 (144)
T ss_pred ------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH----HHHHH-cCCEEEEEECCHHHHHHhCCEEEE
Confidence 999999999999999 999999999996665544433332 34443 35799999999 778889999999
Q ss_pred eeeee
Q psy5297 171 FRNVH 175 (185)
Q Consensus 171 l~~g~ 175 (185)
|++|+
T Consensus 140 l~~g~ 144 (144)
T cd03221 140 LEDGK 144 (144)
T ss_pred EeCCC
Confidence 99885
No 315
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=5.5e-32 Score=213.95 Aligned_cols=173 Identities=41% Similarity=0.655 Sum_probs=150.6
Q ss_pred EcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcC
Q psy5297 8 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVG 87 (185)
Q Consensus 8 ~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~ 87 (185)
+++++||+++...+.+++.+|++|+.++|++++|+||||+||||+++++|.+.+++|+|+|||++...++.++.++.+++
T Consensus 2 ~~~~rHPll~~~~~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~ 81 (218)
T cd03286 2 FEELRHPCLNASTASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIG 81 (218)
T ss_pred cccccCCEEecccCCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecC
Confidence 68899999975544579999999999999999999999999999999999999999999999999998999999999999
Q ss_pred cccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcc
Q psy5297 88 AADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRV 167 (185)
Q Consensus 88 l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~ 167 (185)
..+......|+|+.++++...+.+...+|+++|+|||++||++.|+.++.+.+++++.+..+.++|++||+.++......
T Consensus 82 ~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~ 161 (218)
T cd03286 82 ARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHE 161 (218)
T ss_pred cccccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhc
Confidence 88889999999999999999999988999999999999999999999999987788886338999999999665543333
Q ss_pred ccceeeeeEEEEe
Q psy5297 168 IPTFRNVHESKYL 180 (185)
Q Consensus 168 ~~~l~~g~i~~~~ 180 (185)
-.-+.+.++....
T Consensus 162 ~~~v~~~~m~~~~ 174 (218)
T cd03286 162 HGGVRLGHMACAV 174 (218)
T ss_pred CcceEEEEEEEEE
Confidence 3345556654433
No 316
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.4e-33 Score=247.79 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=117.6
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH--hhCceecCCC-CC---cch---------
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA--QIGCFVPCDS-AT---ISV--------- 78 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~--~~g~~v~~~~-~~---~~~--------- 78 (185)
++.+++|+||++++|++++|+||||||||||+|+| |.|.+.. .++ |+||+. .. +++
T Consensus 336 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~-~v~q~~~~~~~~~tv~e~l~~~~~ 414 (556)
T PRK11819 336 DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLA-YVDQSRDALDPNKTVWEEISGGLD 414 (556)
T ss_pred CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEE-EEeCchhhcCCCCCHHHHHHhhcc
Confidence 35799999999999999999999999999999999 4444422 245 999874 11 121
Q ss_pred ----------hhHHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHh
Q psy5297 79 ----------VDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELAS 146 (185)
Q Consensus 79 ----------~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~ 146 (185)
...+++.+++.+ ..++++++||+|||||++||+++ .+|+++||||||+|+ |.....+. .+.+.+
T Consensus 415 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~L---D~~~~~~l-~~~l~~ 490 (556)
T PRK11819 415 IIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDL---DVETLRAL-EEALLE 490 (556)
T ss_pred cccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC---CHHHHHHH-HHHHHh
Confidence 224566778763 56899999999999999999999 999999999995555 54444332 244443
Q ss_pred cCCCeEEEecCh-hHHHHhhccccceee-eeEE-EEec
Q psy5297 147 NRQPFTLFATHF-HEIALLSRVIPTFRN-VHES-KYLY 181 (185)
Q Consensus 147 ~~~~~vii~tH~-~~~~~~~d~~~~l~~-g~i~-~~~~ 181 (185)
...+||++||+ .++..+||++++|++ |++. ..|+
T Consensus 491 -~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~ 527 (556)
T PRK11819 491 -FPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGN 527 (556)
T ss_pred -CCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCC
Confidence 23489999999 788899999999986 7775 3443
No 317
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-33 Score=240.01 Aligned_cols=158 Identities=18% Similarity=0.122 Sum_probs=125.2
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHhhCceecCCCCCcc----
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQIGCFVPCDSATIS---- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~~g~~v~~~~~~~~---- 77 (185)
+++++|+||++++|+.++|+|+||||||||+++| |.| .|+.++. ||||++..++
T Consensus 334 ~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~-~v~Q~p~lf~gTir 412 (559)
T COG4988 334 KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS-WVSQNPYLFAGTIR 412 (559)
T ss_pred CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee-eeCCCCccccccHH
Confidence 3899999999999999999999999999999999 444 2356677 9999884433
Q ss_pred -------------hhhHHHhhcCcccc----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297 78 -------------VVDQIFTRVGAADS----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG 133 (185)
Q Consensus 78 -------------~~~~~l~~~~l~~~----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~ 133 (185)
.+.++++..++.+. ..+.-..||+||+||+++||++ .+++++|+||||+++|....
T Consensus 413 eNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE 492 (559)
T COG4988 413 ENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETE 492 (559)
T ss_pred HHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHH
Confidence 13344455554433 3344456999999999999999 99999999999666666554
Q ss_pred hHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 134 FGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 134 ~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
..+.+. +.++.+ ++|++++||......-+|+|++|++|++++.|.+++
T Consensus 493 ~~i~~~-l~~l~~--~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~ 540 (559)
T COG4988 493 QIILQA-LQELAK--QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEE 540 (559)
T ss_pred HHHHHH-HHHHHh--CCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHH
Confidence 444443 366665 699999999988888899999999999999998765
No 318
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=6e-33 Score=247.50 Aligned_cols=158 Identities=13% Similarity=0.072 Sum_probs=118.9
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHhhCceecCCCCCcc--hh
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQIGCFVPCDSATIS--VV 79 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~~g~~v~~~~~~~~--~~ 79 (185)
+++++|+||++++|++++|+||||||||||+++| |.|. ++.+++ |+||++..++ ..
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~lf~~ti~ 426 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA-TVFQDAGLFNRSIR 426 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE-EEccCCccCcccHH
Confidence 4689999999999999999999999999999999 4332 234556 9999873322 11
Q ss_pred ---------------hHHHhhcC-----------cccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297 80 ---------------DQIFTRVG-----------AADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD 132 (185)
Q Consensus 80 ---------------~~~l~~~~-----------l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d 132 (185)
.+.++..+ ++....+....||||||||++|||++ .+|+++||||||+++|...
T Consensus 427 ~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~ 506 (585)
T TIGR01192 427 ENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506 (585)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 11222222 22234456678999999999999999 9999999999966666655
Q ss_pred hhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 133 GFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 133 ~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
...+.+.+ ..+. .+.|+|++||+.+....||++++|++|+++..|+.++
T Consensus 507 ~~~i~~~l-~~~~--~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 555 (585)
T TIGR01192 507 EARVKNAI-DALR--KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQE 555 (585)
T ss_pred HHHHHHHH-HHHh--CCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHH
Confidence 44444433 4443 3899999999955556799999999999999887654
No 319
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=4.4e-33 Score=252.35 Aligned_cols=154 Identities=16% Similarity=0.104 Sum_probs=121.1
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--HhhCceecCCC-CCcc--------------
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL--AQIGCFVPCDS-ATIS-------------- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~--~~~g~~v~~~~-~~~~-------------- 77 (185)
+.+++|+||++++|++++|+||||||||||||+| |.|.+. ..++ |+||.. ..++
T Consensus 522 ~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~ig-yv~Q~~~~~l~~~~~~~~~~~~~~~ 600 (718)
T PLN03073 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMA-VFSQHHVDGLDLSSNPLLYMMRCFP 600 (718)
T ss_pred CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEE-EEeccccccCCcchhHHHHHHHhcC
Confidence 4699999999999999999999999999999999 444332 2345 888864 1111
Q ss_pred -----hhhHHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCC
Q psy5297 78 -----VVDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQP 150 (185)
Q Consensus 78 -----~~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~ 150 (185)
.+..+++.+++.+ ..++++++||+|||||++||+++ .+|++|||||| |+++|...... +++.+.+ .+.
T Consensus 601 ~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEP---T~~LD~~s~~~-l~~~L~~-~~g 675 (718)
T PLN03073 601 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEP---SNHLDLDAVEA-LIQGLVL-FQG 675 (718)
T ss_pred CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCC---CCCCCHHHHHH-HHHHHHH-cCC
Confidence 1345677788863 57889999999999999999999 99999999999 55556555544 3355554 245
Q ss_pred eEEEecCh-hHHHHhhccccceeeeeEE-EEecc
Q psy5297 151 FTLFATHF-HEIALLSRVIPTFRNVHES-KYLYH 182 (185)
Q Consensus 151 ~vii~tH~-~~~~~~~d~~~~l~~g~i~-~~~~~ 182 (185)
|||++||+ ..+..+||++++|++|+++ +.++.
T Consensus 676 tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~ 709 (718)
T PLN03073 676 GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTF 709 (718)
T ss_pred EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCH
Confidence 99999999 7888899999999999997 55543
No 320
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1e-33 Score=236.24 Aligned_cols=142 Identities=18% Similarity=0.160 Sum_probs=113.2
Q ss_pred EEccCCCcHHHHHHHH--------HHHHH-----------HHhhCceecCCCCCc---ch--------------------
Q psy5297 41 VTGPNMGGKSTYIRSI--------GVSVF-----------LAQIGCFVPCDSATI---SV-------------------- 78 (185)
Q Consensus 41 l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g~~v~~~~~~~---~~-------------------- 78 (185)
|+||||||||||+|+| |.|.+ ..+++ |+||++..+ ++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHIN-MVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE-EEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 5899999999999999 44322 22355 899886322 21
Q ss_pred -hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEec
Q psy5297 79 -VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFAT 156 (185)
Q Consensus 79 -~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~t 156 (185)
++++++.+++.+..++++.+||+|||||++|||++ .+|+++|||||++|+|+.....+.+.+ ..+.++.+.|+|++|
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l-~~l~~~~g~tiiivT 158 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL-KTIQEQLGITFVFVT 158 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHHhcCCEEEEEe
Confidence 23456778888888999999999999999999999 999999999997777666655555544 555553589999999
Q ss_pred Ch-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 157 HF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 157 H~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+ .++..+||++++|++|++...+++++
T Consensus 159 Hd~~e~~~~~d~i~vl~~G~i~~~g~~~~ 187 (325)
T TIGR01187 159 HDQEEAMTMSDRIAIMRKGKIAQIGTPEE 187 (325)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99 78889999999999999998887654
No 321
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=6.1e-33 Score=249.43 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=117.8
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH--hhCceecCCCC----Ccch---------
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA--QIGCFVPCDSA----TISV--------- 78 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~--~~g~~v~~~~~----~~~~--------- 78 (185)
.+.+++|+||++++|++++|+||||||||||||+| |.|.+.. .++ |++|... ..++
T Consensus 331 ~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~-y~~q~~~~l~~~~tv~e~l~~~~~ 409 (635)
T PRK11147 331 GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVA-YFDQHRAELDPEKTVMDNLAEGKQ 409 (635)
T ss_pred CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEE-EEeCcccccCCCCCHHHHHHhhcc
Confidence 45799999999999999999999999999999999 5554421 245 8888641 1122
Q ss_pred ----------hhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHh
Q psy5297 79 ----------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELAS 146 (185)
Q Consensus 79 ----------~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~ 146 (185)
+.+++..+++. +..++++++||+|||||++||+++ .+|++|||||| |+++|...... +.+.+.+
T Consensus 410 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEP---t~~LD~~~~~~-l~~~l~~ 485 (635)
T PRK11147 410 EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEP---TNDLDVETLEL-LEELLDS 485 (635)
T ss_pred cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCC---CCCCCHHHHHH-HHHHHHh
Confidence 22345556664 457889999999999999999999 99999999999 55556555443 3345554
Q ss_pred cCCCeEEEecCh-hHHHHhhcccccee-eeeEEEE
Q psy5297 147 NRQPFTLFATHF-HEIALLSRVIPTFR-NVHESKY 179 (185)
Q Consensus 147 ~~~~~vii~tH~-~~~~~~~d~~~~l~-~g~i~~~ 179 (185)
.+.|||++||| .++..+||++++++ +|++..+
T Consensus 486 -~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 486 -YQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred -CCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEc
Confidence 45699999999 78889999999998 7998643
No 322
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7e-33 Score=245.58 Aligned_cols=150 Identities=18% Similarity=0.199 Sum_probs=116.3
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH--hhCceecCCCC-C---cch---------
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA--QIGCFVPCDSA-T---ISV--------- 78 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~--~~g~~v~~~~~-~---~~~--------- 78 (185)
++.+++|+||++++|++++|+||||||||||+|+| |.|.+.. .++ |+||++. . +++
T Consensus 334 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~-~v~q~~~~~~~~~tv~e~l~~~~~ 412 (552)
T TIGR03719 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLA-YVDQSRDALDPNKTVWEEISGGLD 412 (552)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEE-EEeCCccccCCCCcHHHHHHhhcc
Confidence 35799999999999999999999999999999999 5554422 245 8998741 1 121
Q ss_pred ----------hhHHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHh
Q psy5297 79 ----------VDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELAS 146 (185)
Q Consensus 79 ----------~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~ 146 (185)
..++++.+++.+ ..++++++||+|||||++||+++ .+|+++||||||+| +|.....+. .+.+.+
T Consensus 413 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~---LD~~~~~~l-~~~l~~ 488 (552)
T TIGR03719 413 IIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTND---LDVETLRAL-EEALLE 488 (552)
T ss_pred ccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC---CCHHHHHHH-HHHHHH
Confidence 234567778864 46889999999999999999999 99999999999555 554444442 244444
Q ss_pred cCCCeEEEecCh-hHHHHhhccccceee-eeEE
Q psy5297 147 NRQPFTLFATHF-HEIALLSRVIPTFRN-VHES 177 (185)
Q Consensus 147 ~~~~~vii~tH~-~~~~~~~d~~~~l~~-g~i~ 177 (185)
.+.+||++||+ .++..+||++++|++ |++.
T Consensus 489 -~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 489 -FAGCAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred -CCCeEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 23489999999 778889999999987 5765
No 323
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2e-33 Score=215.79 Aligned_cols=130 Identities=17% Similarity=0.147 Sum_probs=99.5
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHH--------HHHHHHh-hCceecCCCCCcchhhHHHhhcCcccc
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG--------VSVFLAQ-IGCFVPCDSATISVVDQIFTRVGAADS 91 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG--------~i~~~~~-~g~~v~~~~~~~~~~~~~l~~~~l~~~ 91 (185)
+++.+++++ |++++|++++|+||||||||||+|+|. .|.+... ++ |+||...
T Consensus 11 ~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~-~~~q~~~----------------- 71 (177)
T cd03222 11 GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV-YKPQYID----------------- 71 (177)
T ss_pred CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEE-EEcccCC-----------------
Confidence 346688884 899999999999999999999999992 2222211 22 4444221
Q ss_pred cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhcccc
Q psy5297 92 QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIP 169 (185)
Q Consensus 92 ~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~ 169 (185)
||+|||||+++|+++ .+|++++||||++++|+.....+...+ ..++++.+.|+|++||+ .++..+||+++
T Consensus 72 -------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l-~~~~~~~~~tiiivsH~~~~~~~~~d~i~ 143 (177)
T cd03222 72 -------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAI-RRLSEEGKKTALVVEHDLAVLDYLSDRIH 143 (177)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH-HHHHHcCCCEEEEEECCHHHHHHhCCEEE
Confidence 999999999999999 999999999996666665555555544 55554234899999999 77788999999
Q ss_pred ceeeeeEE
Q psy5297 170 TFRNVHES 177 (185)
Q Consensus 170 ~l~~g~i~ 177 (185)
+|+++-.+
T Consensus 144 ~l~~~~~~ 151 (177)
T cd03222 144 VFEGEPGV 151 (177)
T ss_pred EEcCCCcc
Confidence 99987554
No 324
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=7.1e-32 Score=213.89 Aligned_cols=162 Identities=43% Similarity=0.764 Sum_probs=147.5
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 85 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~ 85 (185)
+.+++++||+++.....+++++|++|++++|++++|+||||+||||++|+++.+.+.++.|.|+|+....++.+++++.+
T Consensus 1 ~~i~~~rHPlle~~~~~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~ 80 (222)
T cd03287 1 ILIKEGRHPMIESLLDKSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTR 80 (222)
T ss_pred CeeecccCCEEeccCCCCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEE
Confidence 46899999999865555799999999999999999999999999999999999999999999999999889999999999
Q ss_pred cCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297 86 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS 165 (185)
Q Consensus 86 ~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~ 165 (185)
++..+......|+|+.++++...+.+.+.+|+++|+|||++||++.|+.++.+.+++.+.+..+.++|++||+.++.++.
T Consensus 81 ~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 81 MGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred ecCccccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 99999999999999999999999999888899999999999999999998877777888873488999999997777766
Q ss_pred cc
Q psy5297 166 RV 167 (185)
Q Consensus 166 d~ 167 (185)
.+
T Consensus 161 ~~ 162 (222)
T cd03287 161 RR 162 (222)
T ss_pred Hh
Confidence 43
No 325
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1e-32 Score=248.48 Aligned_cols=176 Identities=14% Similarity=0.148 Sum_probs=136.6
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------- 61 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------- 61 (185)
.++++|+...|-.. .+.+.+++|+||++++||+++|+||||||||||+|+| |.+.+
T Consensus 4 ~l~~~nl~~~y~~~-~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 4 LLELKDIRRSYPSG-EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred EEEEeeEEEEeCCC-CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 57777776544210 1125699999999999999999999999999999999 32211
Q ss_pred --HHhhCceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 62 --LAQIGCFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 62 --~~~~g~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
+..++ |+||++..+ + .+.++++.+++.+..++++.+||+||+||++|||++ .
T Consensus 83 ~~~~~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 83 LRREHFG-FIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161 (648)
T ss_pred HHhccEE-EEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 12345 999887322 2 123456677888888999999999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+++|||||++|+|......+.+. ++.+++ .+.|++++||+.+..+.||++++|++|++++.+++++
T Consensus 162 ~P~lLllDEP~~gLD~~s~~~l~~l-l~~l~~-~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 229 (648)
T PRK10535 162 GGQVILADEPTGALDSHSGEEVMAI-LHQLRD-RGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQE 229 (648)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-HHHHHh-cCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccc
Confidence 9999999999777666655555554 366665 5899999999955667899999999999999988764
No 326
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-32 Score=207.30 Aligned_cols=177 Identities=19% Similarity=0.156 Sum_probs=136.4
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------- 61 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------- 61 (185)
|++|.+++.++++-| +...-..|+||++-+||+.+|+|.+||||||||+|| |.+.+
T Consensus 2 ~~~PLL~V~~lsk~Y-----g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 2 MDKPLLSVSGLSKLY-----GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred CCCcceeehhhhhhh-----CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHh
Confidence 467778888887766 335568999999999999999999999999999999 33321
Q ss_pred -----------HHhhCceecCCCCC---cc------------------------hhhHHHhhcCcc-cccccCcCccHHH
Q psy5297 62 -----------LAQIGCFVPCDSAT---IS------------------------VVDQIFTRVGAA-DSQYRGISTFMME 102 (185)
Q Consensus 62 -----------~~~~g~~v~~~~~~---~~------------------------~~~~~l~~~~l~-~~~~~~~~~lS~g 102 (185)
+...| +|.|++.. +. .+..+++++.++ +..+..+.+||||
T Consensus 77 ~msEaeRR~L~RTeWG-~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG 155 (258)
T COG4107 77 TMSEAERRRLLRTEWG-FVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG 155 (258)
T ss_pred hhchHHHHHHhhhccc-eeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchH
Confidence 23446 88887621 11 244677777775 4568889999999
Q ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHH-HhhccccceeeeeEEEEe
Q psy5297 103 MKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIA-LLSRVIPTFRNVHESKYL 180 (185)
Q Consensus 103 ~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~-~~~d~~~~l~~g~i~~~~ 180 (185)
|+||+.|||.+ +.|+++++||||-|+|..-.+.+..+ ++.+..+.+.+++++|||.-++ -+++|..+|++|++++.|
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDl-lrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~G 234 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDL-LRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHH-HHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence 99999999999 99999999999555554443333332 4666666799999999995555 579999999999999988
Q ss_pred ccCC
Q psy5297 181 YHTN 184 (185)
Q Consensus 181 ~~~~ 184 (185)
-++.
T Consensus 235 LTDr 238 (258)
T COG4107 235 LTDR 238 (258)
T ss_pred cccc
Confidence 7654
No 327
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.7e-33 Score=246.93 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=120.3
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHhhCceecCCCCCcc--h
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQIGCFVPCDSATIS--V 78 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~~g~~v~~~~~~~~--~ 78 (185)
.+++++|+||++++|++++|+||||||||||+++| |.| .++.+++ |+||++..++ +
T Consensus 327 ~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~lf~~ti 405 (569)
T PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA-VVSQTPFLFSDTV 405 (569)
T ss_pred CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE-EEccCCeeccccH
Confidence 35799999999999999999999999999999999 333 2234556 9999873332 1
Q ss_pred ---------------hhHHHhhcCcc-----------cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcC
Q psy5297 79 ---------------VDQIFTRVGAA-----------DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTF 131 (185)
Q Consensus 79 ---------------~~~~l~~~~l~-----------~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~ 131 (185)
+..+++..++. ....+....||+|||||++|||++ .+|+++||||||+++|+.
T Consensus 406 ~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~ 485 (569)
T PRK10789 406 ANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGR 485 (569)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHH
Confidence 22233333332 223445578999999999999999 999999999996666665
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 132 d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
....+.+.+ ..+. .+.|+|++||+.+....||++++|++|+++..|+.++
T Consensus 486 ~~~~i~~~l-~~~~--~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 486 TEHQILHNL-RQWG--EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred HHHHHHHHH-HHHh--CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHH
Confidence 544444433 4443 4899999999966667799999999999999987653
No 328
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=9.8e-33 Score=245.23 Aligned_cols=171 Identities=16% Similarity=0.156 Sum_probs=128.1
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~ 64 (185)
++++++...|- +++++++|+||++++|+.++|+||+||||||++++| |.|. ++.+
T Consensus 329 I~f~~vsf~y~----~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~ 404 (567)
T COG1132 329 IEFENVSFSYP----GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR 404 (567)
T ss_pred EEEEEEEEEcC----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHh
Confidence 45555544332 146899999999999999999999999999999999 4443 3567
Q ss_pred hCceecCCCCCcc--h---------------hhHHHhhcC-----------cccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 65 IGCFVPCDSATIS--V---------------VDQIFTRVG-----------AADSQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 65 ~g~~v~~~~~~~~--~---------------~~~~l~~~~-----------l~~~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
++ +|||++..+. + +.++++..+ .+.........||||||||++|||++ .+
T Consensus 405 I~-~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 405 IG-IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred cc-EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 77 9999984433 1 222233222 23333445568999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|++++|||||+++|+.....+.+.+ ..+.+ ++|+++++|.....+.||++++|++|++++.|++++
T Consensus 484 ~~ILILDEaTSalD~~tE~~I~~~l-~~l~~--~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~e 549 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDAL-KKLLK--GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEE 549 (567)
T ss_pred CCEEEEeccccccCHHhHHHHHHHH-HHHhc--CCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999997777776655555554 44443 579999999855445599999999999999998865
No 329
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=8.8e-33 Score=230.41 Aligned_cols=178 Identities=18% Similarity=0.124 Sum_probs=138.2
Q ss_pred ceEEEcccCCceeeecC------CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHHH---------
Q psy5297 4 GTLVLNQCRHPIVELQG------GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSVF--------- 61 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~------~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~~--------- 61 (185)
+.++.++++..|.-..+ ....+++++||++.+|+.++|+|.+|||||||=+.| |.|.+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~ 354 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLS 354 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccC
Confidence 45666666543322211 234589999999999999999999999999998887 55543
Q ss_pred -------HHhhCceecCCCC-Cc----c-----------------------hhhHHHhhcCccc-ccccCcCccHHHHHH
Q psy5297 62 -------LAQIGCFVPCDSA-TI----S-----------------------VVDQIFTRVGAAD-SQYRGISTFMMEMKE 105 (185)
Q Consensus 62 -------~~~~g~~v~~~~~-~~----~-----------------------~~~~~l~~~~l~~-~~~~~~~~lS~g~~q 105 (185)
+.++- .|||++. .+ + ++.+.+..+|++. ..++++.+|||||||
T Consensus 355 ~~~mrplR~~mQ-vVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQ 433 (534)
T COG4172 355 RKEMRPLRRRMQ-VVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQ 433 (534)
T ss_pred hhhhhhhhhhce-EEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhh
Confidence 23344 7888872 22 2 2456678889874 579999999999999
Q ss_pred HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297 106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY 181 (185)
Q Consensus 106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~ 181 (185)
|++|||++ .+|++++|||| |+.+|..-..+.+ ++.+.++.|.+-+++||| .-+..+||++++|++|+|+++|+
T Consensus 434 RIAIARAliLkP~~i~LDEP---TSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~ 510 (534)
T COG4172 434 RIAIARALILKPELILLDEP---TSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGP 510 (534)
T ss_pred HHHHHHHHhcCCcEEEecCC---chHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCC
Confidence 99999999 99999999999 6666644444432 577777689999999999 66778999999999999999998
Q ss_pred cCCC
Q psy5297 182 HTNV 185 (185)
Q Consensus 182 ~~~~ 185 (185)
.+++
T Consensus 511 ~~~i 514 (534)
T COG4172 511 TEAV 514 (534)
T ss_pred HHHH
Confidence 7653
No 330
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.98 E-value=1.6e-32 Score=249.33 Aligned_cols=170 Identities=18% Similarity=0.142 Sum_probs=125.4
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~ 64 (185)
+++++++..| . +.+++++|+||++++|+.++|+||||||||||+|+| |.| .++.+
T Consensus 474 I~~~~vsf~y---~-~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 549 (708)
T TIGR01193 474 IVINDVSYSY---G-YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQF 549 (708)
T ss_pred EEEEEEEEEc---C-CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHh
Confidence 4555554433 1 235799999999999999999999999999999999 433 23456
Q ss_pred hCceecCCCCCcc------------------hhhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 65 IGCFVPCDSATIS------------------VVDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 65 ~g~~v~~~~~~~~------------------~~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
++ |+||++..++ .+.++++..++.+ ........||||||||++|||++ .
T Consensus 550 i~-~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 550 IN-YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred eE-EEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 67 9999973322 1223344444432 23345567999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+++||||||+++|+.....+. +.+.+..++|+|++||+....+.||++++|++|++++.|+.++
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~----~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIV----NNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHH----HHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999996665554433333 3333224789999999977778899999999999999988654
No 331
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.98 E-value=1.6e-32 Score=246.73 Aligned_cols=162 Identities=13% Similarity=0.132 Sum_probs=121.7
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhh-CceecCCCCC
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQI-GCFVPCDSAT 75 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~-g~~v~~~~~~ 75 (185)
.++++++...| +.+.+++|+||++++|++++|+||||||||||||+| |.|.+.... ..|++|.+..
T Consensus 3 ~l~i~~ls~~~-----~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~ 77 (635)
T PRK11147 3 LISIHGAWLSF-----SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPR 77 (635)
T ss_pred EEEEeeEEEEe-----CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCC
Confidence 46677766544 236799999999999999999999999999999999 444432211 0144432200
Q ss_pred ---c-------------------------------------------------------chhhHHHhhcCcccccccCcC
Q psy5297 76 ---I-------------------------------------------------------SVVDQIFTRVGAADSQYRGIS 97 (185)
Q Consensus 76 ---~-------------------------------------------------------~~~~~~l~~~~l~~~~~~~~~ 97 (185)
. ..+..+++.+++. .+++++
T Consensus 78 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~ 155 (635)
T PRK11147 78 NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALS 155 (635)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchh
Confidence 0 0123344555654 378899
Q ss_pred ccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297 98 TFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH 175 (185)
Q Consensus 98 ~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~ 175 (185)
+||||||||++||+++ .+|++|||||| |+++|.....++. +.+.+ .+.+||+|||| .++..+||++++|++|+
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEP---t~~LD~~~~~~L~-~~L~~-~~~tvlivsHd~~~l~~~~d~i~~L~~G~ 230 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEP---TNHLDIETIEWLE-GFLKT-FQGSIIFISHDRSFIRNMATRIVDLDRGK 230 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCC---CCccCHHHHHHHH-HHHHh-CCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 9999999999999999 99999999999 6667766666543 55655 45699999999 78889999999999999
Q ss_pred EEE
Q psy5297 176 ESK 178 (185)
Q Consensus 176 i~~ 178 (185)
++.
T Consensus 231 i~~ 233 (635)
T PRK11147 231 LVS 233 (635)
T ss_pred EEE
Confidence 974
No 332
>KOG0058|consensus
Probab=99.98 E-value=1.1e-32 Score=242.89 Aligned_cols=175 Identities=14% Similarity=0.123 Sum_probs=135.1
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHH
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFL 62 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~ 62 (185)
+.++++|+...|.... ...|++|+||++++||+++|+||||+||||+..+| |.| +++
T Consensus 464 G~IeF~~VsFaYP~Rp--~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRP--DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred ceEEEEEeeeecCCCC--CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence 3567777777776543 36799999999999999999999999999999999 544 446
Q ss_pred HhhCceecCCCCCcc--hhhHHH---------------hhcC-------cccc----cccCcCccHHHHHHHHHHHHhC-
Q psy5297 63 AQIGCFVPCDSATIS--VVDQIF---------------TRVG-------AADS----QYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 63 ~~~g~~v~~~~~~~~--~~~~~l---------------~~~~-------l~~~----~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
.++| +|-|+|..++ +.+++. +..+ +.+- ..++-.+||||||||++|||||
T Consensus 542 ~~Ig-~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 542 RKIG-LVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred HHee-eeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 7778 9999994443 322222 1111 1111 2345568999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|++|||||.||.+|........+.+ ..+.+ +.|||++.|.....+-||+|+++++|++++.|+.++
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL-~~~~~--~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~e 688 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEAL-DRLMQ--GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDE 688 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHH-HHhhc--CCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHH
Confidence 999999999997777776655444443 66554 699999999988888899999999999999997655
No 333
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.98 E-value=1.6e-32 Score=246.02 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=131.3
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH----------H----------HHHHhhCceecCCCCCc---
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV----------S----------VFLAQIGCFVPCDSATI--- 76 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~----------i----------~~~~~~g~~v~~~~~~~--- 76 (185)
+++.+|+|+|+++++||+++|+|||||||||||++| |. | .+...++ |+||++..+
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~-yv~Q~~~~~~~l 114 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISA-YVQQDDLFIPTL 114 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhce-eeccccccCccC
Confidence 356799999999999999999999999999999999 21 2 1223445 999987322
Q ss_pred c------------------------hhhHHHhhcCcccccccCcC------ccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297 77 S------------------------VVDQIFTRVGAADSQYRGIS------TFMMEMKETATVIKKC-TENSLVIIDELG 125 (185)
Q Consensus 77 ~------------------------~~~~~l~~~~l~~~~~~~~~------~lS~g~~q~~~ia~~l-~~p~llllDEP~ 125 (185)
+ .++++++.+++.+..+..++ .+|+|||||++||+++ .+|++++||||+
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 2 24566777888877777776 5999999999999999 999999999997
Q ss_pred CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh--hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF--HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~--~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+|+.....+.+.+ +.+++ .|.|+|+++|+ .++.+++|++++|++|++++.|++++
T Consensus 195 sgLD~~~~~~l~~~L-~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~ 253 (617)
T TIGR00955 195 SGLDSFMAYSVVQVL-KGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQ 253 (617)
T ss_pred cchhHHHHHHHHHHH-HHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHH
Confidence 777776666555544 66766 59999999998 37889999999999999999998764
No 334
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=1.7e-32 Score=213.45 Aligned_cols=154 Identities=14% Similarity=0.155 Sum_probs=111.3
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH---------HhhCce
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL---------AQIGCF 68 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~---------~~~g~~ 68 (185)
++++++...| +.+.+++ +||++++|++++|+||||||||||+|+| |.+.+. ..++ |
T Consensus 2 l~~~~l~~~~-----~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~-~ 74 (195)
T PRK13541 2 LSLHQLQFNI-----EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCT-Y 74 (195)
T ss_pred eEEEEeeEEE-----CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEE-e
Confidence 4566665444 1244555 9999999999999999999999999999 433221 1234 7
Q ss_pred ecCCCCC---cc----------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCC
Q psy5297 69 VPCDSAT---IS----------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGT 128 (185)
Q Consensus 69 v~~~~~~---~~----------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~ 128 (185)
++|.... .+ .+.++++.+++.+..++++++||+||+||+++|+++ .+|+++|||||++|+
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~L 154 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNL 154 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 7776421 22 134455777888788999999999999999999999 999999999997776
Q ss_pred CcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccc
Q psy5297 129 STFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVI 168 (185)
Q Consensus 129 ~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~ 168 (185)
|+.....+...+ +...+ .+.|+|++||+.+....+|.+
T Consensus 155 D~~~~~~l~~~l-~~~~~-~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 155 SKENRDLLNNLI-VMKAN-SGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred CHHHHHHHHHHH-HHHHh-CCCEEEEEeCCccccchhhee
Confidence 665544444433 44444 589999999995444446543
No 335
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.4e-32 Score=222.38 Aligned_cols=152 Identities=19% Similarity=0.172 Sum_probs=117.6
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-----------HHH-------------hh-Ccee
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-----------FLA-------------QI-GCFV 69 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-----------~~~-------------~~-g~~v 69 (185)
+.+++|+|+ +++|++++|+||||||||||||+| |.|. +.. .. .+|+
T Consensus 14 ~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 92 (255)
T cd03236 14 SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK 92 (255)
T ss_pred chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence 358999995 999999999999999999999999 6653 100 01 1255
Q ss_pred cCCCCCc------------------chhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCc
Q psy5297 70 PCDSATI------------------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTST 130 (185)
Q Consensus 70 ~~~~~~~------------------~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~ 130 (185)
||....+ ..+.++++.+++.+..++.+.+||+|||||+++|+++ .+|+++|||||++++|+
T Consensus 93 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~ 172 (255)
T cd03236 93 PQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI 172 (255)
T ss_pred cchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 5543211 1355677888998888999999999999999999999 99999999999766666
Q ss_pred CChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297 131 FDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK 178 (185)
Q Consensus 131 ~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~ 178 (185)
.....+.+.+ +.+++ .+.++|++||+ ..+..+||++++|+ |++.+
T Consensus 173 ~~~~~l~~~l-~~l~~-~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~ 218 (255)
T cd03236 173 KQRLNAARLI-RELAE-DDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGA 218 (255)
T ss_pred HHHHHHHHHH-HHHHh-cCCEEEEEECCHHHHHHhCCEEEEEC-CCCCc
Confidence 5555555544 66665 48999999999 77777999999995 55554
No 336
>KOG0055|consensus
Probab=99.97 E-value=2.4e-32 Score=252.23 Aligned_cols=175 Identities=15% Similarity=0.132 Sum_probs=133.6
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHH
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFL 62 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~ 62 (185)
..++++|++..|...++ -.+|+++||++++|+.++|+|||||||||++++| |.| +++
T Consensus 349 g~ief~nV~FsYPsRpd--v~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr 426 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPD--VKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLR 426 (1228)
T ss_pred cceEEEEEEecCCCCCc--chhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHH
Confidence 45777888777766432 5699999999999999999999999999999999 443 346
Q ss_pred HhhCceecCCCCCc--chhhHH---------------HhhcCcc-----------cccccCcCccHHHHHHHHHHHHhC-
Q psy5297 63 AQIGCFVPCDSATI--SVVDQI---------------FTRVGAA-----------DSQYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 63 ~~~g~~v~~~~~~~--~~~~~~---------------l~~~~l~-----------~~~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
.++| .|.|+|..+ ++.+++ .+..+.. -...++--+||||||||++|||++
T Consensus 427 ~~ig-lV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv 505 (1228)
T KOG0055|consen 427 SQIG-LVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV 505 (1228)
T ss_pred hhcC-eeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence 7788 999998333 333322 2222211 112233446999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
.+|++|||||||+++|+.+.....+.+ ++..+ |.|.|+++|. ..+.. +|++++|++|++++.|+++|+
T Consensus 506 ~~P~ILLLDEaTSaLD~~se~~Vq~AL-d~~~~--grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~EL 574 (1228)
T KOG0055|consen 506 RNPKILLLDEATSALDAESERVVQEAL-DKASK--GRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDEL 574 (1228)
T ss_pred hCCCEEEecCcccccCHHHHHHHHHHH-HHhhc--CCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHH
Confidence 999999999998888777755444444 66654 8899999998 55555 999999999999999998764
No 337
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=5.6e-32 Score=225.63 Aligned_cols=181 Identities=16% Similarity=0.118 Sum_probs=143.5
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------------HHHHH------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------------GVSVF------ 61 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------------G~i~~------ 61 (185)
|+.+.+.++|+...|-. .++...++++|||++.+||.++|+|.+|||||...+.| |.|.+
T Consensus 2 ~~~~lL~v~nLsV~f~~-~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 2 MTMPLLSIRNLSVAFHQ-EGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred CCCcceeeeccEEEEec-CCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence 56788999998765543 33557799999999999999999999999999888777 33322
Q ss_pred ----------H-HhhCceecCCCCC-cc--------------------------hhhHHHhhcCccc---ccccCcCccH
Q psy5297 62 ----------L-AQIGCFVPCDSAT-IS--------------------------VVDQIFTRVGAAD---SQYRGISTFM 100 (185)
Q Consensus 62 ----------~-~~~g~~v~~~~~~-~~--------------------------~~~~~l~~~~l~~---~~~~~~~~lS 100 (185)
+ ++++ ++||+++. +. ++-++++.+|+.+ .+++++.+||
T Consensus 81 ~~se~~lr~iRG~~I~-MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLS 159 (534)
T COG4172 81 AASERQLRGVRGNKIG-MIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELS 159 (534)
T ss_pred cCCHHHHhhhcccceE-EEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccC
Confidence 1 2345 99999832 11 2445677888864 4688999999
Q ss_pred HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297 101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK 178 (185)
Q Consensus 101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~ 178 (185)
||||||+.||.|+ ++|+++|.||||..+|..-...+..+ ++.+.++.|..++++||| .-+.+++||+.+|++|++++
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~L-l~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDL-LKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHH-HHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 9999999999999 99999999999555555444444443 477777789999999999 77888999999999999999
Q ss_pred EeccCC
Q psy5297 179 YLYHTN 184 (185)
Q Consensus 179 ~~~~~~ 184 (185)
++.++.
T Consensus 239 ~~~t~~ 244 (534)
T COG4172 239 TGTTET 244 (534)
T ss_pred cCcHHH
Confidence 987654
No 338
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.4e-32 Score=233.30 Aligned_cols=173 Identities=14% Similarity=0.073 Sum_probs=131.7
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~ 63 (185)
.++++|++..| ++...++|+|+||++++||.++|+|++|||||||++++ |+|.+ +.
T Consensus 336 ~l~~~~vsF~y---~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e 412 (573)
T COG4987 336 ALELRNVSFTY---PGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRE 412 (573)
T ss_pred eeeeccceeec---CCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHH
Confidence 34555554433 34445799999999999999999999999999999999 44432 22
Q ss_pred hhCceecCCCCCcc-----------------hhhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 64 QIGCFVPCDSATIS-----------------VVDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 64 ~~g~~v~~~~~~~~-----------------~~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
.+. +++|....+. ...++++.+|+++ ..+..-..|||||+||++|||++ +
T Consensus 413 ~i~-vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~ 491 (573)
T COG4987 413 TIS-VLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH 491 (573)
T ss_pred HHh-hhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc
Confidence 333 6777653222 2334556666643 34455678999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+.+++||||||.|+|+.....+...+.+++ +++|+|++||..--.+.||+|++|++|+++++|++++
T Consensus 492 dapl~lLDEPTegLD~~TE~~vL~ll~~~~---~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~ 558 (573)
T COG4987 492 DAPLWLLDEPTEGLDPITERQVLALLFEHA---EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAE 558 (573)
T ss_pred CCCeEEecCCcccCChhhHHHHHHHHHHHh---cCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHh
Confidence 999999999988877777666655554443 3899999999977778899999999999999998765
No 339
>PLN03232 ABC transporter C family member; Provisional
Probab=99.97 E-value=7.4e-32 Score=260.17 Aligned_cols=172 Identities=13% Similarity=0.140 Sum_probs=127.8
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~ 64 (185)
++++|+...| +++.+++|+|+||++++||.++|+||+|||||||+++| |.| .++.+
T Consensus 1235 I~f~nVsf~Y---~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1235 IKFEDVHLRY---RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred EEEEEEEEEE---CCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhh
Confidence 5555555433 22335799999999999999999999999999999999 444 23556
Q ss_pred hCceecCCCCCcc----------------hhhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 65 IGCFVPCDSATIS----------------VVDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 65 ~g~~v~~~~~~~~----------------~~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
++ +|||++..++ .+.++++..++.+ .......+||+|||||++|||++ .+|
T Consensus 1312 i~-iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232 1312 LS-IIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred cE-EECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 66 9999984332 1233455555433 23344568999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++||||||+++|......+.+.+ +... .++|+|+++|.......||++++|++|++++.|++++
T Consensus 1391 ~ILILDEATSaLD~~Te~~Iq~~L-~~~~--~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~e 1455 (1495)
T PLN03232 1391 KILVLDEATASVDVRTDSLIQRTI-REEF--KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQE 1455 (1495)
T ss_pred CEEEEECCcccCCHHHHHHHHHHH-HHHc--CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999996666554433333333 3332 4799999999955556699999999999999998765
No 340
>PLN03130 ABC transporter C family member; Provisional
Probab=99.97 E-value=9.8e-32 Score=260.16 Aligned_cols=173 Identities=12% Similarity=0.126 Sum_probs=128.7
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~ 63 (185)
.++++|+...| +++..++|+|+||++++||.+||+||+|||||||+++| |.| .++.
T Consensus 1237 ~I~f~nVsf~Y---~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1237 SIKFEDVVLRY---RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred cEEEEEEEEEe---CCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHh
Confidence 35566655444 23335799999999999999999999999999999999 444 2355
Q ss_pred hhCceecCCCCCcc----------------hhhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 64 QIGCFVPCDSATIS----------------VVDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 64 ~~g~~v~~~~~~~~----------------~~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
+++ +|||++..++ .+.++++..++.+ .......+||+|||||++||||+ .+
T Consensus 1314 ~Is-iVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1314 VLG-IIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred ccE-EECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 667 9999984433 1233445544433 23344568999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++||||||+++|......+.+.+ +... .++|+|+++|.......||++++|++|++++.|++++
T Consensus 1393 p~ILILDEATSaLD~~Te~~Iq~~I-~~~~--~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~e 1458 (1622)
T PLN03130 1393 SKILVLDEATAAVDVRTDALIQKTI-REEF--KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPEN 1458 (1622)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHH-HHHC--CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999996666554433333333 3332 3799999999955556699999999999999998765
No 341
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=99.97 E-value=3.8e-31 Score=211.49 Aligned_cols=176 Identities=44% Similarity=0.750 Sum_probs=142.1
Q ss_pred CceEEEcccCCceeeec-CCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhH
Q psy5297 3 TGTLVLNQCRHPIVELQ-GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQ 81 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~-~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~ 81 (185)
+..+.+++++||+++.. ++++++.||+.++-+...++.|+|||.+||||+||.||.+.+++|+|+|||++...++.++.
T Consensus 9 ~~~l~i~~~~HPll~~~~~~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~ 88 (235)
T PF00488_consen 9 EKSLKIKEGRHPLLEEKLENKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDR 88 (235)
T ss_dssp TTEEEEEEE--TTHHHHTTTSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SE
T ss_pred CCCEEEEeccCCEEeccccCCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccE
Confidence 45799999999999876 45688999999986666899999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHH
Q psy5297 82 IFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI 161 (185)
Q Consensus 82 ~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~ 161 (185)
++.+++..+......|+|..++++...+.+...+.+++|+||+++||++.|+.++.+.+++++.++.++.++++||+.++
T Consensus 89 I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l 168 (235)
T PF00488_consen 89 IFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHEL 168 (235)
T ss_dssp EEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGG
T ss_pred EEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchh
Confidence 99999999999999999999999999999988889999999999999999999999999999987358899999999777
Q ss_pred HHhhccccceeeeeEEE
Q psy5297 162 ALLSRVIPTFRNVHESK 178 (185)
Q Consensus 162 ~~~~d~~~~l~~g~i~~ 178 (185)
.++.++...++..++..
T Consensus 169 ~~~~~~~~~v~~~~~~~ 185 (235)
T PF00488_consen 169 AELLERNPNVQNYHMEV 185 (235)
T ss_dssp GGHHHHSTTEEEEEEEE
T ss_pred HHHhhhCccccccceee
Confidence 77766555555544433
No 342
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.97 E-value=2e-31 Score=234.99 Aligned_cols=160 Identities=18% Similarity=0.197 Sum_probs=116.2
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~ 63 (185)
.++++|+...| .++.+++++|+||++++|+.++|+||||||||||+|+| |.|. ++.
T Consensus 320 ~i~~~~v~f~y---~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 320 SLEFSGLSVAY---PGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred eEEEEEEEEEC---CCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 34555544333 22235799999999999999999999999999999999 4332 244
Q ss_pred hhCceecCCCCCcc--h---------------hhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-C
Q psy5297 64 QIGCFVPCDSATIS--V---------------VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 64 ~~g~~v~~~~~~~~--~---------------~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
+++ |+||++..++ + +.++++..++.+. ..+...+||||||||+++||++ .
T Consensus 397 ~i~-~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 397 QIA-WVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred heE-EEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence 566 9999973332 1 2334444554432 2334568999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF 171 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l 171 (185)
+|+++||||||+++|+.....+.+.+ ..+. .++|+|++||+....+.||++++|
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~~l-~~~~--~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTEAL-RALA--QGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHH-HHhc--CCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999997776666655554433 3433 479999999996666789998765
No 343
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.97 E-value=1.4e-31 Score=228.12 Aligned_cols=162 Identities=17% Similarity=0.179 Sum_probs=130.1
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhCceecCCCCCcc--
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIGCFVPCDSATIS-- 77 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g~~v~~~~~~~~-- 77 (185)
..+++++++||++.+|+.++|+||+|||||||.|+| |.+.+ -.++| |.||+-..++
T Consensus 347 ~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiG-YLPQdVeLF~GT 425 (580)
T COG4618 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIG-YLPQDVELFDGT 425 (580)
T ss_pred CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccC-cCcccceecCCc
Confidence 457899999999999999999999999999999999 33322 24567 9999875544
Q ss_pred hhhHH------------------------HhhcCc--ccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCc
Q psy5297 78 VVDQI------------------------FTRVGA--ADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTST 130 (185)
Q Consensus 78 ~~~~~------------------------l~~~~l--~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~ 130 (185)
+.+++ +-++.- +-.....-..||+|||||+++||++ .+|.+++||||-+++|.
T Consensus 426 IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence 22222 211111 1123344568999999999999999 99999999999999888
Q ss_pred CChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 131 FDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 131 ~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
.-..++...+ ..+++ +|.|+|++||-..+...+|++.+|++|++..+|..+++
T Consensus 506 ~GE~AL~~Ai-~~~k~-rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eV 558 (580)
T COG4618 506 EGEAALAAAI-LAAKA-RGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEV 558 (580)
T ss_pred hHHHHHHHHH-HHHHH-cCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHH
Confidence 8777777766 66666 69999999999999999999999999999999987763
No 344
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=6.4e-31 Score=197.82 Aligned_cols=143 Identities=17% Similarity=0.210 Sum_probs=99.5
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCc-eecCCCCCcchhhHHHhhcCcccccccCcCccHH
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC-FVPCDSATISVVDQIFTRVGAADSQYRGISTFMM 101 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~-~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~ 101 (185)
+++++++||++++|++++|+||||||||||+++|....- ...|. ++............+...++. ..+||+
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~-------~~qlS~ 83 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAKLPLEELRRRIGY-------VPQLSG 83 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccCCHHHHHhceEE-------EeeCCH
Confidence 469999999999999999999999999999999933211 11121 111100000001111111111 112999
Q ss_pred HHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297 102 EMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH 175 (185)
Q Consensus 102 g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~ 175 (185)
||+||+++++++ .+|++++||||++|+|......+.+.+ ..+.+ .+.|++++||+ .++..+||+++.+++|+
T Consensus 84 G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l-~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 84 GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELL-RELAE-EGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH-HHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999 999999999997776665544444433 55555 37899999999 77788899999998874
No 345
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=2.4e-31 Score=254.98 Aligned_cols=159 Identities=14% Similarity=0.127 Sum_probs=126.5
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-H----------HHHH---------HHhhCceecCCCCC---cc-
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-G----------VSVF---------LAQIGCFVPCDSAT---IS- 77 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G----------~i~~---------~~~~g~~v~~~~~~---~~- 77 (185)
.+.+|+|+|+++++|++++|+|||||||||||++| | .|.+ +..++ |+||++.. .+
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~-yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIG-YVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhccee-eecccccCCCCCCH
Confidence 46799999999999999999999999999999999 2 2211 22345 99997521 11
Q ss_pred -----------------------hhhHHHhhcCcccccccCcC----ccHHHHHHHHHHHHhC-CCCe-EEEEeCCCCCC
Q psy5297 78 -----------------------VVDQIFTRVGAADSQYRGIS----TFMMEMKETATVIKKC-TENS-LVIIDELGRGT 128 (185)
Q Consensus 78 -----------------------~~~~~l~~~~l~~~~~~~~~----~lS~g~~q~~~ia~~l-~~p~-llllDEP~~g~ 128 (185)
.++++++.+++.+..++.++ .||+|||||++||+++ .+|+ +++|||||+|+
T Consensus 854 ~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgL 933 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933 (1394)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCC
Confidence 13456777888877788776 7999999999999999 9996 99999997777
Q ss_pred CcCChhHHHHHHHHHHHhcCCCeEEEecCh-hH-HHHhhccccceeee-eEEEEeccC
Q psy5297 129 STFDGFGMACSIARELASNRQPFTLFATHF-HE-IALLSRVIPTFRNV-HESKYLYHT 183 (185)
Q Consensus 129 ~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~-~~~~~d~~~~l~~g-~i~~~~~~~ 183 (185)
|......+.+. ++.+++ .|.|||++||+ .. +.+.+|++++|++| ++++.|+++
T Consensus 934 D~~~~~~i~~~-L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 934 DSQTAWSICKL-MRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred CHHHHHHHHHH-HHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 77665555554 466665 58999999998 43 45789999999997 999998764
No 346
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=4.4e-31 Score=255.12 Aligned_cols=172 Identities=13% Similarity=0.136 Sum_probs=127.5
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~ 64 (185)
++++|+...| +++...+|+|+||+|++||.++|+|++|||||||+++| |.| .++.+
T Consensus 1309 I~f~nVsf~Y---~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~ 1385 (1560)
T PTZ00243 1309 LVFEGVQMRY---REGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ 1385 (1560)
T ss_pred EEEEEEEEEe---CCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhc
Confidence 4455544333 33335699999999999999999999999999999999 444 23556
Q ss_pred hCceecCCCCCcc----------------hhhHHHhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-CC-
Q psy5297 65 IGCFVPCDSATIS----------------VVDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-TE- 115 (185)
Q Consensus 65 ~g~~v~~~~~~~~----------------~~~~~l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~~- 115 (185)
++ ||||++..++ .+.++++..++.+.. ...-.+||+|||||++|||++ .+
T Consensus 1386 I~-iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~ 1464 (1560)
T PTZ00243 1386 FS-MIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKG 1464 (1560)
T ss_pred ce-EECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCC
Confidence 66 9999984443 133455555554332 233467999999999999999 75
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|++|||||||+++|......+.+.+ +... .++|+|+++|..+....||+|++|++|++++.|++++
T Consensus 1465 ~~ILlLDEATSaLD~~te~~Iq~~L-~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~e 1530 (1560)
T PTZ00243 1465 SGFILMDEATANIDPALDRQIQATV-MSAF--SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRE 1530 (1560)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHH-HHHC--CCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 8999999996665554433333333 3332 4799999999977777899999999999999998765
No 347
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.97 E-value=3.4e-31 Score=254.48 Aligned_cols=165 Identities=19% Similarity=0.198 Sum_probs=119.3
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------HHH
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV--------------FLA 63 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~--------------~~~ 63 (185)
++++|+...|-. ....++++|+||++++|++++|+||||||||||+++| |.|. ++.
T Consensus 383 I~~~nVsf~Y~~--~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~ 460 (1466)
T PTZ00265 383 IQFKNVRFHYDT--RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRS 460 (1466)
T ss_pred EEEEEEEEEcCC--CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHH
Confidence 455555443321 0124699999999999999999999999999999999 3332 234
Q ss_pred hhCceecCCCCCc--chhhHH-----------------------------------------------------------
Q psy5297 64 QIGCFVPCDSATI--SVVDQI----------------------------------------------------------- 82 (185)
Q Consensus 64 ~~g~~v~~~~~~~--~~~~~~----------------------------------------------------------- 82 (185)
+++ ||||++..+ ++.+++
T Consensus 461 ~Ig-~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 539 (1466)
T PTZ00265 461 KIG-VVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRK 539 (1466)
T ss_pred hcc-EecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccc
Confidence 566 999987332 222222
Q ss_pred -------------HhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHH
Q psy5297 83 -------------FTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMA 137 (185)
Q Consensus 83 -------------l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~ 137 (185)
++.+++.+. ..+...+||||||||++|||++ .+|++|||||||+++|+.....+.
T Consensus 540 ~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~ 619 (1466)
T PTZ00265 540 NYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ 619 (1466)
T ss_pred ccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence 222333222 2455778999999999999999 999999999997777666555454
Q ss_pred HHHHHHHHhcCCCeEEEecChhHHHHhhccccceeee
Q psy5297 138 CSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNV 174 (185)
Q Consensus 138 ~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g 174 (185)
+.+ +.+.++.|.|+|++||+....+.||++++|++|
T Consensus 620 ~~L-~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 620 KTI-NNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHH-HHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 443 555543489999999995555789999999987
No 348
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.97 E-value=1.8e-30 Score=200.78 Aligned_cols=145 Identities=54% Similarity=0.858 Sum_probs=128.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhCCCCe
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENS 117 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~ 117 (185)
+++|+||||+|||||||++|.+.++++.|+|+|+....++.+++++..++..+..+++.++||+|++|...+++.+.+|+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999888887778999
Q ss_pred EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEecc
Q psy5297 118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYH 182 (185)
Q Consensus 118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~ 182 (185)
++|+|||++|||+.+...+.+.+++.+.++.+.++|++||+.++.+++++...++++++....+.
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~ 145 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEET 145 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEec
Confidence 99999999999999888887767777765248899999999888899988777888887655443
No 349
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=7.4e-31 Score=237.91 Aligned_cols=154 Identities=14% Similarity=0.063 Sum_probs=115.1
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH----H------HH---------------------------HH
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV----S------VF---------------------------LA 63 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~----i------~~---------------------------~~ 63 (185)
.+.+|+|+||++++|++++|+||||||||||||+| |. + .+ ..
T Consensus 189 ~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~ 268 (718)
T PLN03073 189 GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEE 268 (718)
T ss_pred CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHH
Confidence 35699999999999999999999999999999999 31 0 00 00
Q ss_pred hhCceecCCCC------------------Cc-----------------------chhhHHHhhcCcc-cccccCcCccHH
Q psy5297 64 QIGCFVPCDSA------------------TI-----------------------SVVDQIFTRVGAA-DSQYRGISTFMM 101 (185)
Q Consensus 64 ~~g~~v~~~~~------------------~~-----------------------~~~~~~l~~~~l~-~~~~~~~~~lS~ 101 (185)
.++ +++|.+. .. ..+..++..+|+. +..++++++||+
T Consensus 269 ~~~-~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSg 347 (718)
T PLN03073 269 EAQ-LVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSG 347 (718)
T ss_pred HHH-HHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCH
Confidence 011 2222100 00 0122344555654 446788999999
Q ss_pred HHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEE-E
Q psy5297 102 EMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHES-K 178 (185)
Q Consensus 102 g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~-~ 178 (185)
|||||++||+++ .+|+++||||| |+.+|.....+.. +.+.+ .+.|+|++||+ .++..+||++++|++|++. +
T Consensus 348 G~k~rv~LA~aL~~~p~lLlLDEP---t~~LD~~~~~~l~-~~L~~-~~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~ 422 (718)
T PLN03073 348 GWRMRIALARALFIEPDLLLLDEP---TNHLDLHAVLWLE-TYLLK-WPKTFIVVSHAREFLNTVVTDILHLHGQKLVTY 422 (718)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECC---CCCCCHHHHHHHH-HHHHH-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999 99999999999 6667777666643 66665 58899999999 7788899999999999996 3
Q ss_pred Eec
Q psy5297 179 YLY 181 (185)
Q Consensus 179 ~~~ 181 (185)
.|+
T Consensus 423 ~g~ 425 (718)
T PLN03073 423 KGD 425 (718)
T ss_pred CCC
Confidence 443
No 350
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.3e-31 Score=206.14 Aligned_cols=175 Identities=14% Similarity=0.122 Sum_probs=132.1
Q ss_pred EcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH------------HHhhCc
Q psy5297 8 LNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------LAQIGC 67 (185)
Q Consensus 8 ~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------~~~~g~ 67 (185)
+.+....+.......+.+++++|++|.+|+|+.|+|.||||||||+++| |.|.+ ++...+
T Consensus 4 ~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~la 83 (263)
T COG1101 4 LSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLA 83 (263)
T ss_pred cccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHH
Confidence 3444444444333456799999999999999999999999999999999 33322 222223
Q ss_pred eecCCC-----CCcchhhH---------------------------HHhhc--CcccccccCcCccHHHHHHHHHHHHhC
Q psy5297 68 FVPCDS-----ATISVVDQ---------------------------IFTRV--GAADSQYRGISTFMMEMKETATVIKKC 113 (185)
Q Consensus 68 ~v~~~~-----~~~~~~~~---------------------------~l~~~--~l~~~~~~~~~~lS~g~~q~~~ia~~l 113 (185)
-|+|++ ..+++.++ -++.+ |++..++.++.-|||||||.++++.+.
T Consensus 84 rVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAt 163 (263)
T COG1101 84 RVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMAT 163 (263)
T ss_pred HHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHh
Confidence 677876 23332222 22332 456778899999999999999999988
Q ss_pred -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+.|++++|||-|+++||.....+.+.- ..+.++.+.|.+++||+ .++..+.+|.++|++|+|+.+...+
T Consensus 164 l~~pkiLLLDEHTAALDPkta~~vm~lT-~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~ 234 (263)
T COG1101 164 LHPPKILLLDEHTAALDPKTAEFVMELT-AKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE 234 (263)
T ss_pred cCCCcEEEecchhhcCCcchHHHHHHHH-HHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccc
Confidence 999999999997777777655555543 45555578999999999 8899999999999999999887644
No 351
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=1.2e-30 Score=250.33 Aligned_cols=158 Identities=12% Similarity=0.075 Sum_probs=126.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH----------HHHHH----------HHhhCceecCCCCCc---c--
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI----------GVSVF----------LAQIGCFVPCDSATI---S-- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i----------G~i~~----------~~~~g~~v~~~~~~~---~-- 77 (185)
+.+|+|+|+.+++|++++|+||||||||||||+| |.+.+ ...++ |++|++..+ +
T Consensus 893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~ig-yv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISG-YCEQNDIHSPQVTVR 971 (1470)
T ss_pred ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheE-EEccccccCCCCcHH
Confidence 4699999999999999999999999999999999 22222 12345 999975221 1
Q ss_pred ----------------------hhhHHHhhcCcccccccCc-----CccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCC
Q psy5297 78 ----------------------VVDQIFTRVGAADSQYRGI-----STFMMEMKETATVIKKC-TENSLVIIDELGRGTS 129 (185)
Q Consensus 78 ----------------------~~~~~l~~~~l~~~~~~~~-----~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~ 129 (185)
.++++++.+++.+..++.+ +.||+|||||++||+++ .+|++++|||||+|+|
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 1345677788877777775 58999999999999999 9999999999977777
Q ss_pred cCChhHHHHHHHHHHHhcCCCeEEEecCh-h-HHHHhhccccceee-eeEEEEeccC
Q psy5297 130 TFDGFGMACSIARELASNRQPFTLFATHF-H-EIALLSRVIPTFRN-VHESKYLYHT 183 (185)
Q Consensus 130 ~~d~~~~~~~il~~l~~~~~~~vii~tH~-~-~~~~~~d~~~~l~~-g~i~~~~~~~ 183 (185)
+.....+.+.+ +.+++ .|.|||++||+ . ++.+.+|++++|++ |++++.|+.+
T Consensus 1052 ~~~a~~v~~~L-~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1052 ARAAAIVMRTV-RNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred HHHHHHHHHHH-HHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence 76655555544 66766 58999999998 4 56789999999996 8999998753
No 352
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=99.97 E-value=4.3e-30 Score=236.57 Aligned_cols=177 Identities=48% Similarity=0.786 Sum_probs=161.3
Q ss_pred CceEEEcccCCceeeec-CCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhH
Q psy5297 3 TGTLVLNQCRHPIVELQ-GGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQ 81 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~-~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~ 81 (185)
++.+.+++++||+++.. ....+|+||++++ +.+.++.|+|||++||||+||.+|.+.+++|+|+|||+....+++++.
T Consensus 574 ~~~l~i~~~rHP~le~~~~~~~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~ 652 (854)
T PRK05399 574 DPGIDIEEGRHPVVEQVLGGEPFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDR 652 (854)
T ss_pred CCCEEEEeccCcEEecccCCCceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCe
Confidence 35689999999999864 3457999999999 778999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHH
Q psy5297 82 IFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI 161 (185)
Q Consensus 82 ~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~ 161 (185)
++.++|..+......|+|+.++.+...+.+..++++++|+|||++||++.|+.++.+.+++++.+..+++++++||++++
T Consensus 653 I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el 732 (854)
T PRK05399 653 IFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHEL 732 (854)
T ss_pred eeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHH
Confidence 99999999999999999999999999998888899999999999999999999999999999987446899999999999
Q ss_pred HHhhccccceeeeeEEEEe
Q psy5297 162 ALLSRVIPTFRNVHESKYL 180 (185)
Q Consensus 162 ~~~~d~~~~l~~g~i~~~~ 180 (185)
.+++++..-+.+.++....
T Consensus 733 ~~l~~~~~~v~n~~m~~~~ 751 (854)
T PRK05399 733 TELEEKLPGVKNVHVAVKE 751 (854)
T ss_pred HHHhhhcCCeEEEEEEEEE
Confidence 9999988778888876553
No 353
>PLN03232 ABC transporter C family member; Provisional
Probab=99.97 E-value=2.5e-31 Score=256.53 Aligned_cols=159 Identities=12% Similarity=0.045 Sum_probs=120.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-HHHHhhCceecCCCCCcc--h-------------
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-VFLAQIGCFVPCDSATIS--V------------- 78 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-~~~~~~g~~v~~~~~~~~--~------------- 78 (185)
+++|+|+||++++|+.++|+||+|||||||+++| |.+ .++.+++ |+||++..++ +
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Ia-yv~Q~p~Lf~gTIreNI~fg~~~~~e 708 (1495)
T PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVA-YVPQVSWIFNATVRENILFGSDFESE 708 (1495)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEE-EEcCccccccccHHHHhhcCCccCHH
Confidence 5799999999999999999999999999999999 322 2344566 9999984433 2
Q ss_pred -hhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHH
Q psy5297 79 -VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELA 145 (185)
Q Consensus 79 -~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~ 145 (185)
+.++++..++.+. ...+-.+||||||||++||||+ .+|+++|||||++++|+.....+.+.++....
T Consensus 709 ~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l 788 (1495)
T PLN03232 709 RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL 788 (1495)
T ss_pred HHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh
Confidence 3334444444322 2334457999999999999999 99999999999666555444444333333332
Q ss_pred hcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 146 SNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 146 ~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.++|+|++||.......||++++|++|+++..|+.++
T Consensus 789 --~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~e 825 (1495)
T PLN03232 789 --KGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAE 825 (1495)
T ss_pred --cCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHH
Confidence 4789999999966778899999999999999987654
No 354
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=3.3e-31 Score=256.04 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=121.0
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCcc--hhh-----------
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATIS--VVD----------- 80 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~~--~~~----------- 80 (185)
.+++++|+||++++|++++|+|||||||||||++| |.+.+..+++ |+||++..+. +.+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~-yv~Q~~~l~~~Tv~enI~~~~~~~~~ 750 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIA-YVPQQAWIMNATVRGNILFFDEEDAA 750 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEE-EEeCCCccCCCcHHHHHHcCChhhHH
Confidence 35699999999999999999999999999999999 5555555666 9999874322 211
Q ss_pred ---HHHh---------hc--CcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHH
Q psy5297 81 ---QIFT---------RV--GAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELA 145 (185)
Q Consensus 81 ---~~l~---------~~--~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~ 145 (185)
+.++ .+ |+....+++..+||||||||++|||++ .+|+++|||||++++|+.....+.+.++....
T Consensus 751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~ 830 (1560)
T PTZ00243 751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL 830 (1560)
T ss_pred HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh
Confidence 1222 12 333345677899999999999999999 99999999999666555444444332222222
Q ss_pred hcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 146 SNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 146 ~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.++|+|++||+.+....||++++|++|++...|+.++
T Consensus 831 --~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~ 867 (1560)
T PTZ00243 831 --AGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSAD 867 (1560)
T ss_pred --CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 4899999999955567899999999999998887653
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.97 E-value=1.1e-30 Score=252.29 Aligned_cols=173 Identities=10% Similarity=0.057 Sum_probs=128.1
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~ 63 (185)
.++++|+...| +++..++|+|+||++++||.+||+|++|||||||+++| |.| .++.
T Consensus 1284 ~I~f~nVsf~Y---~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1284 RVEFRNYCLRY---REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred cEEEEEEEEEe---CCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHh
Confidence 35555554333 22334799999999999999999999999999999999 443 2355
Q ss_pred hhCceecCCCCCcc----------------hhhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 64 QIGCFVPCDSATIS----------------VVDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 64 ~~g~~v~~~~~~~~----------------~~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
+++ ++||++..++ .+.++++..++.+ .......+||+|||||++|||++ .+
T Consensus 1361 ~i~-iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1361 KIT-IIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred cCe-EECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 667 9999984333 1233445444432 23344467999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++||||||+++|......+.+.+ +... .++|+|+++|.......||++++|++|++++.|++++
T Consensus 1440 ~~ILiLDEaTSalD~~Te~~Iq~~l-~~~~--~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~e 1505 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTI-RTQF--EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSN 1505 (1522)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHH-HHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999996666654433333333 3332 4799999999966677799999999999999998865
No 356
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.97 E-value=8.6e-31 Score=251.75 Aligned_cols=175 Identities=12% Similarity=0.061 Sum_probs=127.6
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH--------------------------
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV-------------------------- 58 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~-------------------------- 58 (185)
++++|++..|... ...++|+|+||++++|+.++|+||+|||||||+++| |.
T Consensus 1166 I~f~nVsF~Y~~~--~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1166 IEIMDVNFRYISR--PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred EEEEEEEEECCCC--CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 5666665554321 135799999999999999999999999999999999 21
Q ss_pred -----------------------------------H-------------HHHHhhCceecCCCCCcc--h----------
Q psy5297 59 -----------------------------------S-------------VFLAQIGCFVPCDSATIS--V---------- 78 (185)
Q Consensus 59 -----------------------------------i-------------~~~~~~g~~v~~~~~~~~--~---------- 78 (185)
| .++.+++ ||||++..++ +
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~-~V~Qep~LF~gTIreNI~~g~~~ 1322 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFS-IVSQEPMLFNMSIYENIKFGKED 1322 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhcc-EeCCCCccccccHHHHHhcCCCC
Confidence 1 1134556 9999984443 2
Q ss_pred -----hhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHH
Q psy5297 79 -----VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIA 141 (185)
Q Consensus 79 -----~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il 141 (185)
+.++++..++.+. ....-..||||||||++||||+ .+|++||||||||++|+.....+.+.+
T Consensus 1323 at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L- 1401 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI- 1401 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH-
Confidence 2333444444332 2334567999999999999999 999999999997776665545444444
Q ss_pred HHHHhcCCCeEEEecChhHHHHhhccccceee----eeEE-EEeccCC
Q psy5297 142 RELASNRQPFTLFATHFHEIALLSRVIPTFRN----VHES-KYLYHTN 184 (185)
Q Consensus 142 ~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~----g~i~-~~~~~~~ 184 (185)
..+....+.|+|++||.....+.||++++|++ |+++ +.|+.++
T Consensus 1402 ~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~e 1449 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEE 1449 (1466)
T ss_pred HHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHH
Confidence 44431248999999999777778999999999 8954 7887654
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=6.3e-31 Score=234.22 Aligned_cols=147 Identities=19% Similarity=0.189 Sum_probs=115.3
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-----------HHH-------------hh-Ccee
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-----------FLA-------------QI-GCFV 69 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-----------~~~-------------~~-g~~v 69 (185)
.++|++++ .+++|++++|+||||||||||+|+| |.+. +.+ .. ..+.
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 165 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK 165 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeec
Confidence 57999999 8999999999999999999999999 6653 210 01 0133
Q ss_pred cCCCCCc------------------chhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCc
Q psy5297 70 PCDSATI------------------SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTST 130 (185)
Q Consensus 70 ~~~~~~~------------------~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~ 130 (185)
+|..... ..++++++.+++.+..++++++||+||+||++||+++ .+|+++||||||+++|+
T Consensus 166 ~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~ 245 (590)
T PRK13409 166 PQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI 245 (590)
T ss_pred ccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 4422111 1245677888998889999999999999999999999 99999999999666665
Q ss_pred CChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceee
Q psy5297 131 FDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRN 173 (185)
Q Consensus 131 ~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~ 173 (185)
.....+.+. ++.+++ +.+||++||+ .++..+||+++++++
T Consensus 246 ~~~~~l~~~-i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 246 RQRLNVARL-IRELAE--GKYVLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred HHHHHHHHH-HHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 554444443 366654 8999999999 888899999999976
No 358
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=1.2e-30 Score=251.61 Aligned_cols=172 Identities=12% Similarity=0.101 Sum_probs=127.0
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHH-------------HHHHhh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVS-------------VFLAQI 65 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i-------------~~~~~~ 65 (185)
++++|+...| .++..++|+|+||+|++|+.++|+|++|||||||+++| |.| .++.++
T Consensus 1218 I~f~nVs~~Y---~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1218 MDVQGLTAKY---TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred EEEEEEEEEe---CCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhce
Confidence 4445444333 22346799999999999999999999999999999999 333 234556
Q ss_pred CceecCCCCCcc----------------hhhHHHhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297 66 GCFVPCDSATIS----------------VVDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-TENS 117 (185)
Q Consensus 66 g~~v~~~~~~~~----------------~~~~~l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~~p~ 117 (185)
+ |+||++..++ .+.++++..++.+.. ...-..||+|||||++|||++ .+|+
T Consensus 1295 s-~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ 1373 (1490)
T TIGR01271 1295 G-VIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAK 1373 (1490)
T ss_pred E-EEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCC
Confidence 6 9999984443 233456666654322 223347999999999999999 9999
Q ss_pred EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|||||||+++|......+.+.+ +... .++|||++||.......||++++|++|++++.|++.+
T Consensus 1374 ILlLDEaTS~lD~~Te~~I~~~L-~~~~--~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~ 1437 (1490)
T TIGR01271 1374 ILLLDEPSAHLDPVTLQIIRKTL-KQSF--SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQK 1437 (1490)
T ss_pred EEEEeCCcccCCHHHHHHHHHHH-HHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999996666554433333333 3322 4799999999966666799999999999999998764
No 359
>PLN03130 ABC transporter C family member; Provisional
Probab=99.97 E-value=4.7e-31 Score=255.46 Aligned_cols=174 Identities=10% Similarity=0.033 Sum_probs=126.6
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH--------HHHHHhhCceecCCCCCc
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV--------SVFLAQIGCFVPCDSATI 76 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~--------i~~~~~~g~~v~~~~~~~ 76 (185)
++++|+...|-. ...+++|+|+||++++|+.++|+||+|||||||+++| |. +.++.+++ |+||++..+
T Consensus 615 I~~~nvsf~y~~--~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Ia-yv~Q~p~Lf 691 (1622)
T PLN03130 615 ISIKNGYFSWDS--KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVA-YVPQVSWIF 691 (1622)
T ss_pred eEEEeeEEEccC--CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEE-EEcCccccC
Confidence 555555443311 1235799999999999999999999999999999999 43 33344566 999998443
Q ss_pred c----------------hhhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCC
Q psy5297 77 S----------------VVDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGT 128 (185)
Q Consensus 77 ~----------------~~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~ 128 (185)
. .++++++..++.+. ...+-.+||||||||++||||+ .+|+++|||||++++
T Consensus 692 ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSAL 771 (1622)
T PLN03130 692 NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771 (1622)
T ss_pred CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 2 23344444444322 2344557999999999999999 999999999995555
Q ss_pred CcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 129 STFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 129 ~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|......+.+..+..+. .++|+|++||.......||++++|++|++...|+.++
T Consensus 772 D~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~e 825 (1622)
T PLN03130 772 DAHVGRQVFDKCIKDEL--RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEE 825 (1622)
T ss_pred CHHHHHHHHHHHhhHHh--cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 55443333332233332 4799999999977778899999999999999887653
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=4.4e-31 Score=254.63 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=121.6
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCc--chhhHH----------
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATI--SVVDQI---------- 82 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~--~~~~~~---------- 82 (185)
+++++|+||++++|++++|+|||||||||||++| |.|.+.+.++ |+||++..+ ++.+++
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~ia-yv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 517 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRIS-FSPQTSWIMPGTIKDNIIFGLSYDEYR 517 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEE-EEeCCCccCCccHHHHHHhccccchHH
Confidence 4689999999999999999999999999999999 5555555666 999987433 222222
Q ss_pred ----HhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHh
Q psy5297 83 ----FTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELAS 146 (185)
Q Consensus 83 ----l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~ 146 (185)
++..++.+ ....+..+||||||||++|||++ .+|+++|||||++++|......+.+.++..+.
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~- 596 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM- 596 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-
Confidence 22222221 13445679999999999999999 99999999999777766665555543334443
Q ss_pred cCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 147 NRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 147 ~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.++|+|++||+.+....||++++|++|++...|++++
T Consensus 597 -~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~ 633 (1490)
T TIGR01271 597 -SNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSE 633 (1490)
T ss_pred -cCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 3899999999944455699999999999998887543
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=228.16 Aligned_cols=150 Identities=18% Similarity=0.241 Sum_probs=122.2
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH--hhCceecCCCCCc----c-----------
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA--QIGCFVPCDSATI----S----------- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~--~~g~~v~~~~~~~----~----------- 77 (185)
+.+++++||.+.+|+.++|+||||+|||||||+| |.|.+.. ++| |.+|+...+ +
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~ig-yf~Q~~~~l~~~~t~~d~l~~~~~~ 413 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIG-YFDQHRDELDPDKTVLEELSEGFPD 413 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEE-EEEehhhhcCccCcHHHHHHhhCcc
Confidence 6799999999999999999999999999999999 3333322 345 888876221 1
Q ss_pred ----hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCe
Q psy5297 78 ----VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPF 151 (185)
Q Consensus 78 ----~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~ 151 (185)
.+..++.+|++. +...++++.||||||.|+.+|+.+ .+|.+|||||| |+.+|.+++.. +-+.|.. ...|
T Consensus 414 ~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEP---TNhLDi~s~~a-Le~aL~~-f~Gt 488 (530)
T COG0488 414 GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP---TNHLDIESLEA-LEEALLD-FEGT 488 (530)
T ss_pred ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCC---CccCCHHHHHH-HHHHHHh-CCCe
Confidence 244566777775 456899999999999999999999 99999999999 99999887766 3366665 7889
Q ss_pred EEEecCh-hHHHHhhccccceeeeeEEEE
Q psy5297 152 TLFATHF-HEIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 152 vii~tH~-~~~~~~~d~~~~l~~g~i~~~ 179 (185)
||+|||| ..+..+|++++.+.+ ++...
T Consensus 489 vl~VSHDr~Fl~~va~~i~~~~~-~~~~~ 516 (530)
T COG0488 489 VLLVSHDRYFLDRVATRIWLVED-KVEEF 516 (530)
T ss_pred EEEEeCCHHHHHhhcceEEEEcC-ceeEc
Confidence 9999999 888999999999998 55443
No 362
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.97 E-value=9.5e-30 Score=232.19 Aligned_cols=172 Identities=30% Similarity=0.496 Sum_probs=150.6
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCC-CCcchhhH
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS-ATISVVDQ 81 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~-~~~~~~~~ 81 (185)
++.+.+++++||++.. .++|++|+++. ..+.+++|+|||++||||+||++|.+.+++++|+|||+.. ..+++++.
T Consensus 298 ~~~i~l~~~rHPll~~---~~~Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~ 373 (782)
T PRK00409 298 EGKIDLRQARHPLLDG---EKVVPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE 373 (782)
T ss_pred CCcEEEcCcCCceecc---CceECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce
Confidence 3468899999999963 46899999997 4578999999999999999999999999999999999986 67899999
Q ss_pred HHhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHH
Q psy5297 82 IFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI 161 (185)
Q Consensus 82 ~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~ 161 (185)
++..+|..+.....+++||+||++++.+++++.+|+++|+|||++|||+.++..+...+++.+.+ .++++|++||+.++
T Consensus 374 i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~el 452 (782)
T PRK00409 374 IFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKEL 452 (782)
T ss_pred EEEecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHHH
Confidence 99999988889999999999999999999999999999999999999999999888777788876 58999999999777
Q ss_pred HHhhccccceeeeeEEEE
Q psy5297 162 ALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 162 ~~~~d~~~~l~~g~i~~~ 179 (185)
..++.....+.++.+.+.
T Consensus 453 ~~~~~~~~~v~~~~~~~d 470 (782)
T PRK00409 453 KALMYNREGVENASVEFD 470 (782)
T ss_pred HHHHhcCCCeEEEEEEEe
Confidence 666544455567777553
No 363
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.97 E-value=2.3e-30 Score=233.55 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=110.8
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--HHhhCceecCCCCCc--c-------------
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--LAQIGCFVPCDSATI--S------------- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--~~~~g~~v~~~~~~~--~------------- 77 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.+.+ ..+++ |+||++..+ +
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~-~v~Q~~~l~~~tv~eni~~~~~~~~ 543 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLF-YVPQRPYMTLGTLRDQIIYPDSSED 543 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEE-EECCCCCCCCcCHHHHHhcCCChhh
Confidence 4799999999999999999999999999999999 44333 22345 999986211 1
Q ss_pred ---------hhhHHHhhcCcccccccC---------cCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297 78 ---------VVDQIFTRVGAADSQYRG---------ISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMAC 138 (185)
Q Consensus 78 ---------~~~~~l~~~~l~~~~~~~---------~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~ 138 (185)
.+.++++.+++.+..+++ ..+||+|||||++|||++ .+|+++||||||++ +|.....+
T Consensus 544 ~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~---LD~~~~~~ 620 (659)
T TIGR00954 544 MKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSA---VSVDVEGY 620 (659)
T ss_pred hhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccC---CCHHHHHH
Confidence 123456667776655543 378999999999999999 99999999999555 55443333
Q ss_pred HHHHHHHhcCCCeEEEecChhHHHHhhcccccee
Q psy5297 139 SIARELASNRQPFTLFATHFHEIALLSRVIPTFR 172 (185)
Q Consensus 139 ~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~ 172 (185)
+.+.+++ .+.|+|++||+.+..+.||++++++
T Consensus 621 -l~~~l~~-~~~tvI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 621 -MYRLCRE-FGITLFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred -HHHHHHH-cCCEEEEEeCchHHHHhCCEEEEEe
Confidence 3355555 5899999999966678999999996
No 364
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.97 E-value=7.1e-31 Score=253.71 Aligned_cols=161 Identities=13% Similarity=0.086 Sum_probs=118.9
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCc--chhh------------
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATI--SVVD------------ 80 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~--~~~~------------ 80 (185)
+++++|+||++++|++++|+||||||||||+++| |.+.+.++++ |+||++..+ ++.+
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~-yv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 729 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVA-YVPQQAWIQNDSLRENILFGKALNEKY 729 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEE-EEcCCccccCCcHHHHhhcCCccCHHH
Confidence 5699999999999999999999999999999999 5555555666 999987432 2222
Q ss_pred --HHHhhcCcc-----------cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHh
Q psy5297 81 --QIFTRVGAA-----------DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELAS 146 (185)
Q Consensus 81 --~~l~~~~l~-----------~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~ 146 (185)
++++..++. ....++..+||||||||++|||++ .+|+++|||||++++|+.....+.+.+......
T Consensus 730 ~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~ 809 (1522)
T TIGR00957 730 YQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV 809 (1522)
T ss_pred HHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhh
Confidence 222222221 123566789999999999999999 999999999996665554444443333221111
Q ss_pred cCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 147 NRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 147 ~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
..++|+|++||+.+....||++++|++|++...|+.++
T Consensus 810 ~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~ 847 (1522)
T TIGR00957 810 LKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQE 847 (1522)
T ss_pred hcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHH
Confidence 14789999999955555699999999999998887543
No 365
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.97 E-value=8.4e-31 Score=231.05 Aligned_cols=145 Identities=16% Similarity=0.145 Sum_probs=103.0
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHhh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQI 65 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~~ 65 (185)
++++|+...| .+ .+.+|+|+||++++|+.++|+||||||||||+|+| |.|. ++.++
T Consensus 335 I~~~~vsf~Y---~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i 410 (529)
T TIGR02868 335 LELRDLSFGY---PG-SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRI 410 (529)
T ss_pred EEEEEEEEec---CC-CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhhe
Confidence 4455544433 11 24699999999999999999999999999999999 4442 23456
Q ss_pred CceecCCCCCcc-----------------hhhHHHhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 66 GCFVPCDSATIS-----------------VVDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 66 g~~v~~~~~~~~-----------------~~~~~l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
+ ||||++..++ .+.++++..++++.. ...-..||||||||++|||++ .+|
T Consensus 411 ~-~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~ 489 (529)
T TIGR02868 411 S-VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA 489 (529)
T ss_pred E-EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC
Confidence 6 9999984333 233455555554332 233457999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
+++||||||+++|+.....+.+.+ ..+. .++|+|++||.
T Consensus 490 ~iliLDE~TSaLD~~te~~I~~~l-~~~~--~~~TvIiItHr 528 (529)
T TIGR02868 490 PILLLDEPTEHLDAGTESELLEDL-LAAL--SGKTVVVITHH 528 (529)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHH-HHhc--CCCEEEEEecC
Confidence 999999996665554433333333 3322 47999999995
No 366
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=2.3e-30 Score=248.19 Aligned_cols=161 Identities=11% Similarity=0.065 Sum_probs=127.1
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH-----------HHH------------HHhhCceecCCCCCc-
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV-----------SVF------------LAQIGCFVPCDSATI- 76 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~-----------i~~------------~~~~g~~v~~~~~~~- 76 (185)
.+.+|+|+|+.+++||+++|+||||||||||||+| |. |.+ +..++ |++|+...+
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~-yv~Q~d~~~~ 151 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVV-YNAETDVHFP 151 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeE-EeccccccCC
Confidence 35699999999999999999999999999999999 32 111 11234 888875211
Q ss_pred --ch-----------------------------hhHHHhhcCcccccccC-----cCccHHHHHHHHHHHHhC-CCCeEE
Q psy5297 77 --SV-----------------------------VDQIFTRVGAADSQYRG-----ISTFMMEMKETATVIKKC-TENSLV 119 (185)
Q Consensus 77 --~~-----------------------------~~~~l~~~~l~~~~~~~-----~~~lS~g~~q~~~ia~~l-~~p~ll 119 (185)
++ .+.+++.+|+.+..+++ ++.||||||||++||+++ .+|+++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 11 13356778887766554 467999999999999999 999999
Q ss_pred EEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh--hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 120 IIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF--HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 120 llDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~--~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|||||+|+|+.....+.+.+ +.++++.|.|+|+++|+ .++.+++|++++|++|++++.|++++
T Consensus 232 llDEPTsgLD~~~~~~i~~~L-~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~ 297 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRAL-KTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADK 297 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHH-HHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHH
Confidence 999998887777666666644 67765458999999997 57889999999999999999987653
No 367
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.96 E-value=5.7e-29 Score=194.50 Aligned_cols=161 Identities=30% Similarity=0.445 Sum_probs=119.6
Q ss_pred EEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhc
Q psy5297 7 VLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRV 86 (185)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~ 86 (185)
++++++||+++ ..+++++|++|+. |++++|+||||||||||+|+|+...+.++.|.++|+....+. .+.++..+
T Consensus 1 ~~~~~~hp~~~---~~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~~~ 74 (199)
T cd03283 1 EAKNLGHPLIG---REKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFTSI 74 (199)
T ss_pred CCcccCCCeec---CCCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEEec
Confidence 36899999998 2468999999975 699999999999999999999877778889989988775555 45556555
Q ss_pred CcccccccCcCccHHHHHHHHHHHHhCC--CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297 87 GAADSQYRGISTFMMEMKETATVIKKCT--ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL 164 (185)
Q Consensus 87 ~l~~~~~~~~~~lS~g~~q~~~ia~~l~--~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~ 164 (185)
...+......+.+..++++...+...+. +|+++|+|||++|+|+.+...+.+.+++.+.+ .+.++|++||+.+....
T Consensus 75 ~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 75 RVSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELADL 153 (199)
T ss_pred cchhccccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHHHHh
Confidence 5555554445555555544444555555 99999999999999998877776655677776 58999999999555554
Q ss_pred hccccceeee
Q psy5297 165 SRVIPTFRNV 174 (185)
Q Consensus 165 ~d~~~~l~~g 174 (185)
.+....+.+.
T Consensus 154 ~~~~~~v~~~ 163 (199)
T cd03283 154 LDLDSAVRNY 163 (199)
T ss_pred hhcCCCeEEE
Confidence 4333333333
No 368
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=99.96 E-value=1.7e-29 Score=231.91 Aligned_cols=176 Identities=46% Similarity=0.761 Sum_probs=159.0
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHH
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQI 82 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~ 82 (185)
++.+.+++++||+++......+|.||++++ +...++.|+|||++||||+||.+|.+.+++|+|+|||+....+++++.+
T Consensus 560 ~~~i~i~~~RHP~le~~~~~~~VpNdi~l~-~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~I 638 (840)
T TIGR01070 560 DPQLRIREGRHPVVEQVLRTPFVPNDLEMA-HNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAESAELPLFDRI 638 (840)
T ss_pred CCcEEEEeeECHHHHhccCCCeEeeeeecC-CCccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccchheEeccccEE
Confidence 456899999999987433346999999998 4568999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHH
Q psy5297 83 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIA 162 (185)
Q Consensus 83 l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~ 162 (185)
+.++|..+......|+|+.+|++...|.+..++++++|+||+++||++.|+.++.+.+++++.+..++.++++||++++.
T Consensus 639 ftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~ 718 (840)
T TIGR01070 639 FTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELT 718 (840)
T ss_pred EEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHH
Confidence 99999999999999999999999999999888899999999999999999999999998998864688999999999999
Q ss_pred HhhccccceeeeeEEEE
Q psy5297 163 LLSRVIPTFRNVHESKY 179 (185)
Q Consensus 163 ~~~d~~~~l~~g~i~~~ 179 (185)
.+++....+.+.++...
T Consensus 719 ~l~~~~~~v~n~~~~~~ 735 (840)
T TIGR01070 719 ALEESLPGLKNVHVAAL 735 (840)
T ss_pred HHhhhCCCeEEEEEEEE
Confidence 88887777777777553
No 369
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=99.96 E-value=3.6e-29 Score=228.45 Aligned_cols=177 Identities=47% Similarity=0.746 Sum_probs=162.3
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 85 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~ 85 (185)
+.+++.+||+++..-...+|.||++++- .++++.|+|||+|||||+||.+|.+.+++|+|+|||++...+++++.++.+
T Consensus 578 l~i~~gRHPvvE~~~~~~fVpNd~~L~~-~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA~~A~i~ivD~IfTR 656 (843)
T COG0249 578 LEIKEGRHPVVEAVLDNGFVPNDIDLSG-NRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTR 656 (843)
T ss_pred EEEEecCcchhhhhccCCcccCceeeCC-CceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeHHHccccccceeeec
Confidence 8999999999986543349999999985 689999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297 86 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS 165 (185)
Q Consensus 86 ~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~ 165 (185)
+|..|.+....|+|..+|.+...|....++.+++||||.++||+..|+-++.|.+++++.+..++.++++||++++.++.
T Consensus 657 iGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~tLFATHy~ELt~l~ 736 (843)
T COG0249 657 IGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLFATHYHELTELE 736 (843)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCceEEEeccHHHHHHhh
Confidence 99999999999999999999999999998888999999999999999999999999999975589999999999999999
Q ss_pred ccccceeeeeEEEEeccC
Q psy5297 166 RVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 166 d~~~~l~~g~i~~~~~~~ 183 (185)
++...+.|.++......+
T Consensus 737 ~~~~~v~N~h~~~~e~~~ 754 (843)
T COG0249 737 EKLPQVKNYHMSAVEEGG 754 (843)
T ss_pred hcccccceeEEEEEEcCC
Confidence 998878877776544433
No 370
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.96 E-value=1.2e-28 Score=194.53 Aligned_cols=172 Identities=38% Similarity=0.616 Sum_probs=135.6
Q ss_pred EEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhc
Q psy5297 7 VLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRV 86 (185)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~ 86 (185)
++++++||+++.. ..++|.||++++-..+++++|+||||+|||||||.|+.+.++++.|.++|.....+..+++++..+
T Consensus 1 ~i~~~rHPll~~~-~~~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l 79 (213)
T cd03281 1 EIQGGRHPLLELF-VDSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRM 79 (213)
T ss_pred CcccccCCEEecc-CCceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeee
Confidence 3688999999752 246899999997443489999999999999999999988777999999999988888889998888
Q ss_pred CcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhc--CCCeEEEecChhHHHHh
Q psy5297 87 GAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASN--RQPFTLFATHFHEIALL 164 (185)
Q Consensus 87 ~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~--~~~~vii~tH~~~~~~~ 164 (185)
+-.+......++|+..+++...+...+.+|+++|+|||++|||+.+...+...+++++.+. .+.++|++||+.++.+.
T Consensus 80 ~~~~si~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 80 SSRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred CCccChhhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 8877888888999888865555444449999999999999999998888877666787652 13589999999655544
Q ss_pred hc--cccceeeeeEEEE
Q psy5297 165 SR--VIPTFRNVHESKY 179 (185)
Q Consensus 165 ~d--~~~~l~~g~i~~~ 179 (185)
.. .-..+.+.++...
T Consensus 160 ~~~~~~~~~~~~~~~~~ 176 (213)
T cd03281 160 SLLPERLKIKFLTMEVL 176 (213)
T ss_pred hhhccCCceEEEEEEEE
Confidence 32 3344556666543
No 371
>KOG0059|consensus
Probab=99.96 E-value=9.4e-30 Score=235.50 Aligned_cols=157 Identities=15% Similarity=0.137 Sum_probs=134.4
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------HHHhhCceecCCCCCcc-----
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV--------------FLAQIGCFVPCDSATIS----- 77 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~--------------~~~~~g~~v~~~~~~~~----- 77 (185)
+.+++|+.+++||+.|++|||||||||++|++ |.+. ...++| |+||.....+
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iG-yCPQ~d~l~~~lT~r 658 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLG-YCPQFDALWEELTGR 658 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcc-cCCchhhhhhhccHH
Confidence 89999999999999999999999999999999 3332 345678 9999863222
Q ss_pred -------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHH
Q psy5297 78 -------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMA 137 (185)
Q Consensus 78 -------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~ 137 (185)
.++.+++.+++.+..+++++.+|+|+|||+++|.++ .+|++++||||++|+||..+..+.
T Consensus 659 EhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW 738 (885)
T KOG0059|consen 659 EHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLW 738 (885)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence 366778899999999999999999999999999999 999999999998888886655544
Q ss_pred HHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 138 CSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 138 ~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
. ++..+++ .|..+|++||. +|.+.+|||+.+|.+|++.+.|++.+
T Consensus 739 ~-ii~~~~k-~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~ 784 (885)
T KOG0059|consen 739 D-IIARLRK-NGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQE 784 (885)
T ss_pred H-HHHHHHh-cCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHH
Confidence 4 4577776 45699999998 89999999999999999999988654
No 372
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=1e-28 Score=200.04 Aligned_cols=100 Identities=14% Similarity=0.063 Sum_probs=83.5
Q ss_pred HHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CC---CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEe
Q psy5297 81 QIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TE---NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA 155 (185)
Q Consensus 81 ~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~---p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~ 155 (185)
++++.+++.+ ..++++++||+||+||+.+|+++ .+ |+++|||||++|+++.+...+.+.+ +.+.+ .|.|+|++
T Consensus 151 ~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L-~~l~~-~g~tvIii 228 (261)
T cd03271 151 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVL-QRLVD-KGNTVVVI 228 (261)
T ss_pred HHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEE
Confidence 3456778877 57899999999999999999999 64 7999999998888887777666654 66665 58999999
Q ss_pred cChhHHHHhhccccce------eeeeEEEEecc
Q psy5297 156 THFHEIALLSRVIPTF------RNVHESKYLYH 182 (185)
Q Consensus 156 tH~~~~~~~~d~~~~l------~~g~i~~~~~~ 182 (185)
||+.+..+.||+++.| ++|+++++|++
T Consensus 229 tH~~~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 229 EHNLDVIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred eCCHHHHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 9995555689999999 89999998864
No 373
>KOG0055|consensus
Probab=99.96 E-value=1e-29 Score=234.93 Aligned_cols=174 Identities=13% Similarity=0.111 Sum_probs=135.2
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~ 63 (185)
.++++|+...|.+..+ .+|++|+||++++|+.++|+||+||||||.+-+| |.| +++.
T Consensus 987 ~I~~~~V~F~YPsRP~--~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~ 1064 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPD--VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRK 1064 (1228)
T ss_pred EEEEeeeEeeCCCCCC--chhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHH
Confidence 4677777777765433 6799999999999999999999999999999999 433 3467
Q ss_pred hhCceecCCCCCc--chhhHHH---------------hhcC-------ccc----ccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 64 QIGCFVPCDSATI--SVVDQIF---------------TRVG-------AAD----SQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 64 ~~g~~v~~~~~~~--~~~~~~l---------------~~~~-------l~~----~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
+++ .|.|+|..+ +..++++ +..+ +.+ ...++-.+||||||||++||||+ .
T Consensus 1065 ~i~-lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1065 QIG-LVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred hcc-eeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence 778 999999433 3333332 1111 111 22344568999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|++|||||.||.+|.......++.+ ++... |.|+|++.|.....+-||.|.++++|+|++.|+.++
T Consensus 1144 nPkILLLDEATSALDseSErvVQeAL-d~a~~--gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1144 NPKILLLDEATSALDSESERVVQEAL-DRAME--GRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDE 1210 (1228)
T ss_pred CCCeeeeeccchhhhhhhHHHHHHHH-HHhhc--CCcEEEEecchhhhhcCCEEEEEECCEEEecccHHH
Confidence 99999999997777766644444443 66654 899999999988888999999999999999998765
No 374
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=7.4e-30 Score=244.84 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=126.1
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-----------HHHHH----------HHhhCceecCCCCCc---c
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-----------GVSVF----------LAQIGCFVPCDSATI---S 77 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-----------G~i~~----------~~~~g~~v~~~~~~~---~ 77 (185)
++.+|+|+|+.+++|++++|+||||||||||||+| |.|.+ ...++ |++|+...+ +
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~-yv~Q~d~~~~~lT 255 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSA-YISQNDVHVGVMT 255 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeE-EecccccCCCcCc
Confidence 35699999999999999999999999999999999 22222 12234 888875221 1
Q ss_pred h-------------------------------------------------------hhHHHhhcCccccc-----ccCcC
Q psy5297 78 V-------------------------------------------------------VDQIFTRVGAADSQ-----YRGIS 97 (185)
Q Consensus 78 ~-------------------------------------------------------~~~~l~~~~l~~~~-----~~~~~ 97 (185)
+ ++.+++.+|+++.. ++.++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 1 12355667776544 45678
Q ss_pred ccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh--hHHHHhhccccceeee
Q psy5297 98 TFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF--HEIALLSRVIPTFRNV 174 (185)
Q Consensus 98 ~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~--~~~~~~~d~~~~l~~g 174 (185)
.+|||||||++||+++ .+|++++||||++|+|+.....+.+.+ +.++++.|.|+|+++|+ .++.+++|++++|++|
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~L-r~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCL-QQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHH-HHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 9999999999999999 999999999997777776666665544 66655358999999997 5888999999999999
Q ss_pred eEEEEeccCC
Q psy5297 175 HESKYLYHTN 184 (185)
Q Consensus 175 ~i~~~~~~~~ 184 (185)
++++.|+.++
T Consensus 415 ~ivy~G~~~~ 424 (1470)
T PLN03140 415 QIVYQGPRDH 424 (1470)
T ss_pred eEEEeCCHHH
Confidence 9999987654
No 375
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.2e-29 Score=188.30 Aligned_cols=166 Identities=19% Similarity=0.222 Sum_probs=126.1
Q ss_pred eEEEcccCCceeee-cCCc-eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------
Q psy5297 5 TLVLNQCRHPIVEL-QGGV-SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------- 61 (185)
Q Consensus 5 ~~~~~~~~~~~l~~-~~~~-~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------- 61 (185)
.+.++++.+.|.-- ++|- -++++|+||+++.||+++|-||+|||||||||++ |+|++
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 36788888876433 3343 3699999999999999999999999999999999 44321
Q ss_pred -------H-HhhCceecCCCCCcc------------------------hhhHHHhhcCccc-ccccCcCccHHHHHHHHH
Q psy5297 62 -------L-AQIGCFVPCDSATIS------------------------VVDQIFTRVGAAD-SQYRGISTFMMEMKETAT 108 (185)
Q Consensus 62 -------~-~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ 108 (185)
+ ..+| ||.|--..++ .+..++.++++.+ .+.-.+.+||||+|||+.
T Consensus 84 pr~vl~vRr~TiG-yVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN 162 (235)
T COG4778 84 PREVLEVRRTTIG-YVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN 162 (235)
T ss_pred hHHHHHHHHhhhH-HHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence 2 2345 7776432222 2556788888864 578889999999999999
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHH-Hhhccccceee
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIA-LLSRVIPTFRN 173 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~-~~~d~~~~l~~ 173 (185)
|||.+ .+-+++||||||+++|....+...+++ ...+. +|+.++=+=||+++. ..|||++-|..
T Consensus 163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli-~e~Ka-~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 163 IARGFIVDYPILLLDEPTASLDATNRAVVVELI-REAKA-RGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhccCceEEecCCcccccccchHHHHHHH-HHHHh-cCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999 999999999997776666655555544 44444 699999999997775 58999887653
No 376
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=6e-29 Score=194.07 Aligned_cols=139 Identities=16% Similarity=0.151 Sum_probs=104.4
Q ss_pred ceEEEeeCCceeEEEEccCCCcHHHHHHHHH-H----------------HHHH----------HhhCceecCCCCCc---
Q psy5297 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG-V----------------SVFL----------AQIGCFVPCDSATI--- 76 (185)
Q Consensus 27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG-~----------------i~~~----------~~~g~~v~~~~~~~--- 76 (185)
+++++++++| +++|+||||||||||+++|. . +.+. .+++ |+||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~vfq~~~~~~~~ 91 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVT-LTFDNSDGRYSI 91 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEE-EEEEcCCCceeE
Confidence 7789999999 99999999999999999992 1 1111 2234 888877432
Q ss_pred ---chhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-----CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcC
Q psy5297 77 ---SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-----TENSLVIIDELGRGTSTFDGFGMACSIARELASNR 148 (185)
Q Consensus 77 ---~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-----~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~ 148 (185)
..++++++. .+..++++.+||+|||||+++|+++ ..|++++||||++|+|+.....+... ++.+++
T Consensus 92 ~~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~-l~~~~~-- 165 (197)
T cd03278 92 ISQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARL-LKEFSK-- 165 (197)
T ss_pred EehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHH-HHHhcc--
Confidence 235566665 5567889999999999999999986 35699999999666655554444443 355543
Q ss_pred CCeEEEecChhHHHHhhccccceee
Q psy5297 149 QPFTLFATHFHEIALLSRVIPTFRN 173 (185)
Q Consensus 149 ~~~vii~tH~~~~~~~~d~~~~l~~ 173 (185)
+.+||++||+.+..+.||+++.+..
T Consensus 166 ~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 166 ETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred CCEEEEEECCHHHHhhcceEEEEEe
Confidence 6899999999555678999998764
No 377
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.3e-29 Score=188.55 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=103.7
Q ss_pred ecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhC-----------ceecC---CCCC
Q psy5297 18 LQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIG-----------CFVPC---DSAT 75 (185)
Q Consensus 18 ~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g-----------~~v~~---~~~~ 75 (185)
++.+.+.++.++||++.+||++.|.||||||||||||+| |.|.+...-. .|+-. -...
T Consensus 10 ~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~e 89 (209)
T COG4133 10 CERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTE 89 (209)
T ss_pred hccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccch
Confidence 344667899999999999999999999999999999999 4443321000 01111 1111
Q ss_pred cc------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHH
Q psy5297 76 IS------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGM 136 (185)
Q Consensus 76 ~~------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~ 136 (185)
++ .+.+.++.+|+.+..+.++.+||.|||+|++|||.. +.+++.|||||++++|......+
T Consensus 90 LTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l 169 (209)
T COG4133 90 LTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL 169 (209)
T ss_pred hhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHH
Confidence 22 245667889999999999999999999999999999 99999999999666555444434
Q ss_pred HHHHHHHHHhcCCCeEEEecCh
Q psy5297 137 ACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 137 ~~~il~~l~~~~~~~vii~tH~ 158 (185)
...+..+.. +|-.||.+||.
T Consensus 170 ~~l~~~H~~--~GGiVllttHq 189 (209)
T COG4133 170 TALMAAHAA--QGGIVLLTTHQ 189 (209)
T ss_pred HHHHHHHhc--CCCEEEEecCC
Confidence 444444444 48889999997
No 378
>KOG0061|consensus
Probab=99.96 E-value=5e-29 Score=222.74 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=135.3
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-----------HHHHH---------HHhhCceecCCCCCcc----
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-----------GVSVF---------LAQIGCFVPCDSATIS---- 77 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-----------G~i~~---------~~~~g~~v~~~~~~~~---- 77 (185)
.+.+|++||..+++||+.||+||+||||||||++| |.|.+ ..+..+||.|+...++
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 46799999999999999999999999999999999 22222 1223349999884333
Q ss_pred -----------------------hhhHHHhhcCcccccccCcC-----ccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCC
Q psy5297 78 -----------------------VVDQIFTRVGAADSQYRGIS-----TFMMEMKETATVIKKC-TENSLVIIDELGRGT 128 (185)
Q Consensus 78 -----------------------~~~~~l~~~~l~~~~~~~~~-----~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~ 128 (185)
+++++++.+|+.+..+..++ .+|||||||+++|.-+ .+|+++++||||+|+
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 47788899999877777776 5999999999999999 999999999998888
Q ss_pred CcCChhHHHHHHHHHHHhcCCCeEEEecCh--hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 129 STFDGFGMACSIARELASNRQPFTLFATHF--HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 129 ~~~d~~~~~~~il~~l~~~~~~~vii~tH~--~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|......+.+. ++.++++ |+|||++=|. .++.++-|++++|.+|++++.|++.+
T Consensus 202 DS~sA~~vv~~-Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~ 257 (613)
T KOG0061|consen 202 DSFSALQVVQL-LKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRE 257 (613)
T ss_pred chhhHHHHHHH-HHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHH
Confidence 88776666664 5888884 9999999997 78889999999999999999998754
No 379
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3e-29 Score=185.11 Aligned_cols=140 Identities=16% Similarity=0.115 Sum_probs=115.9
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH-----------HHH-----------HHhhCceecCCCCCcc-
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV-----------SVF-----------LAQIGCFVPCDSATIS- 77 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~-----------i~~-----------~~~~g~~v~~~~~~~~- 77 (185)
+++..|.++||+|.+||++-|.||+|||||||+.-++. +++ .+|+| +.+|++..++
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G-iLFQD~lLFph 91 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG-ILFQDALLFPH 91 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee-eeecccccccc
Confidence 45789999999999999999999999999999998822 211 35778 8888885444
Q ss_pred ----------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChh
Q psy5297 78 ----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGF 134 (185)
Q Consensus 78 ----------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~ 134 (185)
.++..+++.++++..++.+.++|||||.|+++.|++ ..|++++||||||.+|.--+.
T Consensus 92 lsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~ 171 (213)
T COG4136 92 LSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRD 171 (213)
T ss_pred cccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHH
Confidence 266788999999999999999999999999999999 999999999997766655555
Q ss_pred HHHHHHHHHHHhcCCCeEEEecCh-hHHH
Q psy5297 135 GMACSIARELASNRQPFTLFATHF-HEIA 162 (185)
Q Consensus 135 ~~~~~il~~l~~~~~~~vii~tH~-~~~~ 162 (185)
..++.+...++. .|..++.+||| .++.
T Consensus 172 qfR~wVFs~~r~-agiPtv~VTHD~~Dvp 199 (213)
T COG4136 172 QFRQWVFSEVRA-AGIPTVQVTHDLQDVP 199 (213)
T ss_pred HHHHHHHHHHHh-cCCCeEEEecccccCC
Confidence 555556677766 69999999999 5544
No 380
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=2.6e-28 Score=185.45 Aligned_cols=179 Identities=17% Similarity=0.108 Sum_probs=136.2
Q ss_pred ceEEEcccCCceeeecC----CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH------------
Q psy5297 4 GTLVLNQCRHPIVELQG----GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS------------ 59 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~----~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i------------ 59 (185)
+.++++|+...|....+ ....+++.|||++++|+.++++|.||||||||.|+| |.|
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 35677777766643222 123489999999999999999999999999999999 333
Q ss_pred HHHHhhCceecCCCCC-c-c-------------------------hhhHHHhhcCc-ccccccCcCccHHHHHHHHHHHH
Q psy5297 60 VFLAQIGCFVPCDSAT-I-S-------------------------VVDQIFTRVGA-ADSQYRGISTFMMEMKETATVIK 111 (185)
Q Consensus 60 ~~~~~~g~~v~~~~~~-~-~-------------------------~~~~~l~~~~l-~~~~~~~~~~lS~g~~q~~~ia~ 111 (185)
.++++...++||++.. + + .+.+-+..+|+ .+..+-++..||.|||||+++||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 2344444488888721 1 1 12234556676 46678889999999999999999
Q ss_pred hC-CCCeEEEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 112 KC-TENSLVIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 112 ~l-~~p~llllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
|+ .+|+++|.||. ++.+|.....+.+ ...+.++.|.+.|+++.+ --+..++|.+++|+.|++++.|++.++
T Consensus 163 ALIL~P~iIIaDeA---l~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v 237 (267)
T COG4167 163 ALILRPKIIIADEA---LASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV 237 (267)
T ss_pred HHhcCCcEEEehhh---hhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhh
Confidence 99 99999999999 6666644443432 345556579999999987 778889999999999999999988664
No 381
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.95 E-value=1.6e-27 Score=217.16 Aligned_cols=170 Identities=31% Similarity=0.503 Sum_probs=144.0
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCC-CCcchhhHH
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS-ATISVVDQI 82 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~-~~~~~~~~~ 82 (185)
+.+.+++++||++.. .+++.+|+++.- ..++++|+||||+|||||||+||.+.+.++.|+++|+.. ..++.++.+
T Consensus 294 ~~i~l~~~rhPll~~---~~~vp~di~l~~-~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i 369 (771)
T TIGR01069 294 GKIILENARHPLLKE---PKVVPFTLNLKF-EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEI 369 (771)
T ss_pred CCEEEccccCceecC---CceEeceeEeCC-CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhe
Confidence 368999999999862 247888888752 238999999999999999999999888999999999987 567888888
Q ss_pred HhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHH
Q psy5297 83 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIA 162 (185)
Q Consensus 83 l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~ 162 (185)
+..++..+.....+++||+||++++.+++.+.+|+++|+|||++|||+.++..+...+++.+.+ .++++|++||+.++.
T Consensus 370 ~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~eL~ 448 (771)
T TIGR01069 370 FADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKELK 448 (771)
T ss_pred eeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHH
Confidence 8888877788899999999999999999988899999999999999999999997777788876 699999999997777
Q ss_pred HhhccccceeeeeEEE
Q psy5297 163 LLSRVIPTFRNVHESK 178 (185)
Q Consensus 163 ~~~d~~~~l~~g~i~~ 178 (185)
.++...--+.+..+.+
T Consensus 449 ~~~~~~~~v~~~~~~~ 464 (771)
T TIGR01069 449 ALMYNNEGVENASVLF 464 (771)
T ss_pred HHhcCCCCeEEeEEEE
Confidence 7665544555555543
No 382
>KOG0062|consensus
Probab=99.95 E-value=1.6e-28 Score=209.57 Aligned_cols=152 Identities=17% Similarity=0.161 Sum_probs=118.7
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH--HHHH---Hh-hCceec-----------------CCCC---
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV--SVFL---AQ-IGCFVP-----------------CDSA--- 74 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~--i~~~---~~-~g~~v~-----------------~~~~--- 74 (185)
+.+.+|++-++++..|..|||+|+||+|||||||+|+. +..+ .. .|.+++ ++..
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~ 170 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLA 170 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhc
Confidence 55778999999999999999999999999999999954 2110 00 011221 1110
Q ss_pred C--c-chhhHHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCC
Q psy5297 75 T--I-SVVDQIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQ 149 (185)
Q Consensus 75 ~--~-~~~~~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~ 149 (185)
. . ..++++|..+|+++ ...++.++||||+|.|+++|||+ .+|+||||||| |+.+|..++.|+- .+|.. ..
T Consensus 171 ~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEP---TNhLDv~av~WLe-~yL~t-~~ 245 (582)
T KOG0062|consen 171 GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEP---TNHLDVVAVAWLE-NYLQT-WK 245 (582)
T ss_pred cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCC---cccchhHHHHHHH-HHHhh-CC
Confidence 0 0 11333677788764 46788899999999999999999 99999999999 9999999998854 67765 67
Q ss_pred CeEEEecCh-hHHHHhhccccceeeeeEE
Q psy5297 150 PFTLFATHF-HEIALLSRVIPTFRNVHES 177 (185)
Q Consensus 150 ~~vii~tH~-~~~~~~~d~~~~l~~g~i~ 177 (185)
.|+|+|||| .++..+|+.|+..++-++.
T Consensus 246 ~T~liVSHDr~FLn~V~tdIIH~~~~kL~ 274 (582)
T KOG0062|consen 246 ITSLIVSHDRNFLNTVCTDIIHLENLKLD 274 (582)
T ss_pred ceEEEEeccHHHHHHHHHHHHHHhhhhhh
Confidence 899999999 8889999999999887663
No 383
>KOG0056|consensus
Probab=99.95 E-value=1.7e-28 Score=208.83 Aligned_cols=161 Identities=17% Similarity=0.187 Sum_probs=122.3
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHhhCceecCCCCCcc--
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQIGCFVPCDSATIS-- 77 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~~g~~v~~~~~~~~-- 77 (185)
.++++++||||++.+|+.++|+||+|+||||+||++ |.| .++.++| .|||+...+.
T Consensus 549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG-VVPQDtvLFNdT 627 (790)
T KOG0056|consen 549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG-VVPQDTVLFNDT 627 (790)
T ss_pred CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC-cccCcceeecce
Confidence 357899999999999999999999999999999999 433 2356778 9999873322
Q ss_pred h---------------hhHHHhh-------cCcccccc----cCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCc
Q psy5297 78 V---------------VDQIFTR-------VGAADSQY----RGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTST 130 (185)
Q Consensus 78 ~---------------~~~~l~~-------~~l~~~~~----~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~ 130 (185)
. +.+..+. +++.+--+ ++--.||||+|||++|||++ ..|.+++|||.||.+|.
T Consensus 628 I~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT 707 (790)
T KOG0056|consen 628 ILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDT 707 (790)
T ss_pred eeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCC
Confidence 1 1111111 22222222 33346999999999999999 99999999999887777
Q ss_pred CChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 131 FDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 131 ~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
-...++...+ .++.. +.|.|++.|...-.--||.++++++|+|++.|..+++
T Consensus 708 ~tER~IQaaL-~rlca--~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeL 759 (790)
T KOG0056|consen 708 NTERAIQAAL-ARLCA--NRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEEL 759 (790)
T ss_pred ccHHHHHHHH-HHHhc--CCceEEEeeeehheecccEEEEEeCCeEeecCcHHHH
Confidence 7666665554 67765 6788889997555556899999999999999987753
No 384
>KOG0054|consensus
Probab=99.95 E-value=6e-28 Score=226.94 Aligned_cols=175 Identities=13% Similarity=0.119 Sum_probs=133.0
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCc
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATI 76 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~ 76 (185)
.+++++....|-. ++..+.|+||||++++|+.++|+||-|||||+||.+| |.+.+.+.+. |+||.+..+
T Consensus 518 ~i~i~~~sfsW~~--~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsia-Yv~Q~pWI~ 594 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDS--ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVA-YVPQQPWIQ 594 (1381)
T ss_pred eEEEeeeeEecCC--CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEE-EeccccHhh
Confidence 3555555544433 1234599999999999999999999999999999999 4444455555 999998433
Q ss_pred c----------------hhhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCC
Q psy5297 77 S----------------VVDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGT 128 (185)
Q Consensus 77 ~----------------~~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~ 128 (185)
+ +++++++...+..+ ..++--+||||||||+++|||+ ++.+++|||.|++.+
T Consensus 595 ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAV 674 (1381)
T KOG0054|consen 595 NGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAV 674 (1381)
T ss_pred CCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhh
Confidence 3 34555554444322 3455668999999999999999 999999999996666
Q ss_pred CcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 129 STFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 129 ~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|..-...+.+..+..+. +++|+|++||..+....||.+++|++|+|...|+.+|
T Consensus 675 Dahvg~~if~~ci~~~L--~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~e 728 (1381)
T KOG0054|consen 675 DAHVGKHIFEECIRGLL--RGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEE 728 (1381)
T ss_pred hHhhhHHHHHHHHHhhh--cCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHH
Confidence 65555555544444444 3799999999988889999999999999999998765
No 385
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=2.1e-27 Score=187.31 Aligned_cols=160 Identities=14% Similarity=0.102 Sum_probs=110.4
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeC-CceeEEEEccCCCcHHHHHHHHH-----H----HH---HHH--------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSG-EVSFNLVTGPNMGGKSTYIRSIG-----V----SV---FLA-------- 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~-~g~~~~l~G~NGsGKSTLlk~iG-----~----i~---~~~-------- 63 (185)
.++++|.+ .|-. -++++|+.. +|++++|+||||||||||+++|- . .. ...
T Consensus 5 ~i~l~nf~-~y~~--------~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~ 75 (213)
T cd03279 5 KLELKNFG-PFRE--------EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDT 75 (213)
T ss_pred EEEEECCc-CcCC--------ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCcc
Confidence 45666665 3322 266777654 48899999999999999999991 1 11 111
Q ss_pred -hhCceecCCCCC---------cch--hhH--HHhhcCcccccccCcCccHHHHHHHHHHHHhC-C----------CCeE
Q psy5297 64 -QIGCFVPCDSAT---------ISV--VDQ--IFTRVGAADSQYRGISTFMMEMKETATVIKKC-T----------ENSL 118 (185)
Q Consensus 64 -~~g~~v~~~~~~---------~~~--~~~--~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~----------~p~l 118 (185)
.++ +++|.... ++. +.+ .+...++.+..++++.+||+||+||+++|+++ . +|++
T Consensus 76 ~~v~-~~f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~ 154 (213)
T cd03279 76 AEVS-FTFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEA 154 (213)
T ss_pred EEEE-EEEEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCE
Confidence 122 44444321 111 111 12333456677899999999999999999998 4 5689
Q ss_pred EEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297 119 VIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE 176 (185)
Q Consensus 119 lllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i 176 (185)
+|||||++++|+.....+.+.+ +.+++ .+.|+|++||+ ..+..+||+++++++|-+
T Consensus 155 lllDEp~~~lD~~~~~~~~~~l-~~~~~-~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 155 LFIDEGFGTLDPEALEAVATAL-ELIRT-ENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHH-HHHHh-CCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 9999997776666555554433 66665 48899999999 777889999999998754
No 386
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=3.2e-27 Score=186.26 Aligned_cols=143 Identities=15% Similarity=0.106 Sum_probs=102.9
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH------HHH-HhhCceecCCCCCcc-----------------
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS------VFL-AQIGCFVPCDSATIS----------------- 77 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i------~~~-~~~g~~v~~~~~~~~----------------- 77 (185)
...+++++++ ++++|+|||||||||++++|-.+ ... .+++ ++++.....+
T Consensus 16 ~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (212)
T cd03274 16 GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLS-DLIHNSAGHPNLDSCSVEVHFQEIIDK 89 (212)
T ss_pred CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHH-HHhcCCCCCCCCceEEEEEEEEeCCCH
Confidence 3568888877 79999999999999999999321 111 2344 4444321100
Q ss_pred -------------h----hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhH
Q psy5297 78 -------------V----VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFG 135 (185)
Q Consensus 78 -------------~----~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~ 135 (185)
. ..++.+.+++.+..++++..||+|||||+++|+++ . .|+++++|||++|+|+.....
T Consensus 90 ~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~ 169 (212)
T cd03274 90 PLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSI 169 (212)
T ss_pred HHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHH
Confidence 0 12333556666667888999999999999999987 4 379999999977776666555
Q ss_pred HHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceee
Q psy5297 136 MACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRN 173 (185)
Q Consensus 136 ~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~ 173 (185)
+.+.+ +.+++ +.++|++||+.++.++||++++|..
T Consensus 170 l~~~l-~~~~~--~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 170 VANYI-KERTK--NAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHH-HHHcC--CCEEEEEECcHHHHHhCCEEEEEEe
Confidence 54433 55543 6788999999888999999999875
No 387
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.94 E-value=2.7e-26 Score=173.79 Aligned_cols=129 Identities=35% Similarity=0.478 Sum_probs=102.0
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHh----------hCceecCCCCCcchhhHHHhhcCccccccc
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ----------IGCFVPCDSATISVVDQIFTRVGAADSQYR 94 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~----------~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~ 94 (185)
+.+++.+. ++.+++|+|||||||||++|+++.+...++ .|.++|+....+ ++.
T Consensus 12 ~~~~i~~~--~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----i~~---------- 74 (162)
T cd03227 12 VPNDVTFG--EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL-----IFT---------- 74 (162)
T ss_pred eccEEecC--CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE-----ehh----------
Confidence 55666664 557999999999999999999988877766 555565554332 111
Q ss_pred CcCccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcccc
Q psy5297 95 GISTFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIP 169 (185)
Q Consensus 95 ~~~~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~ 169 (185)
..++|+||+|++.+++++ . +|+++|+|||++|+|+.+...+.+.+.+.. ++ +.++|++||+.++...+|+++
T Consensus 75 -~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~-~~-~~~vii~TH~~~~~~~~d~~~ 151 (162)
T cd03227 75 -RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHL-VK-GAQVIVITHLPELAELADKLI 151 (162)
T ss_pred -eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hc-CCEEEEEcCCHHHHHhhhhEE
Confidence 123999999999999998 5 789999999999999999888888764444 43 889999999977778899998
Q ss_pred ceee
Q psy5297 170 TFRN 173 (185)
Q Consensus 170 ~l~~ 173 (185)
.|..
T Consensus 152 ~l~~ 155 (162)
T cd03227 152 HIKK 155 (162)
T ss_pred EEEE
Confidence 8865
No 388
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.94 E-value=1.5e-26 Score=169.72 Aligned_cols=100 Identities=23% Similarity=0.403 Sum_probs=81.0
Q ss_pred eceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHhhCceecCCCC---Ccc----
Q psy5297 26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQIGCFVPCDSA---TIS---- 77 (185)
Q Consensus 26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~~g~~v~~~~~---~~~---- 77 (185)
|+|+||++++|++++|+||||||||||+++| |.| .....++ |+||+.. ..+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIG-YVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEE-EEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 6899999999999999999999999999999 222 2234455 9999852 222
Q ss_pred ----hhhHHHhhcCcccccccCc----CccHHHHHHHHHHHHhC-CCCeEEEEeCCCC
Q psy5297 78 ----VVDQIFTRVGAADSQYRGI----STFMMEMKETATVIKKC-TENSLVIIDELGR 126 (185)
Q Consensus 78 ----~~~~~l~~~~l~~~~~~~~----~~lS~g~~q~~~ia~~l-~~p~llllDEP~~ 126 (185)
.++.+++.+++.+..++.+ .+||+|||||++||+++ .+|+++||||||+
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 3556777788766555555 99999999999999999 9999999999953
No 389
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=1.2e-27 Score=180.65 Aligned_cols=161 Identities=12% Similarity=0.089 Sum_probs=122.6
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHHH------------HHhhCceecCCC---CCcc---
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSVF------------LAQIGCFVPCDS---ATIS--- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~~------------~~~~g~~v~~~~---~~~~--- 77 (185)
..-+-.+|.++..|+++-++|||||||||||-.+ |.|.+ +++--+|..|.. +.++
T Consensus 12 ~tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred cccccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 3457889999999999999999999999999998 33322 111112444432 1112
Q ss_pred -------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC--------CCCeEEEEeCCCCCCCcCChhHH
Q psy5297 78 -------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC--------TENSLVIIDELGRGTSTFDGFGM 136 (185)
Q Consensus 78 -------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l--------~~p~llllDEP~~g~~~~d~~~~ 136 (185)
.++.+...+++++.+.+..++||||+-||+-+|..+ -..+++|+|||.+++|.-....+
T Consensus 92 YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL 171 (248)
T COG4138 92 YLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL 171 (248)
T ss_pred hhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH
Confidence 356677888999999999999999999999998763 24569999999444444332222
Q ss_pred HHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 137 ACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 137 ~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
..++.++.+ .|.+|||++|| +.-.+-+|+++.++.|++...|..+++
T Consensus 172 -drll~~~c~-~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eV 219 (248)
T COG4138 172 -DRLLSALCQ-QGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEV 219 (248)
T ss_pred -HHHHHHHHh-CCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhh
Confidence 334577776 79999999999 899999999999999999999987764
No 390
>KOG0927|consensus
Probab=99.94 E-value=1.2e-26 Score=199.05 Aligned_cols=157 Identities=18% Similarity=0.157 Sum_probs=114.8
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH--H--------HHHH-----------hhC--------------
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV--S--------VFLA-----------QIG-------------- 66 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~--i--------~~~~-----------~~g-------------- 66 (185)
+.+++.|+.|++.+|+.+||+|||||||||+|++|+. + .... +.+
T Consensus 87 g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~ 166 (614)
T KOG0927|consen 87 GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYL 166 (614)
T ss_pred CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHH
Confidence 4679999999999999999999999999999999921 1 0000 000
Q ss_pred --ceecC-CC---CCcc----------------hhhHHHhhcCc-ccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEe
Q psy5297 67 --CFVPC-DS---ATIS----------------VVDQIFTRVGA-ADSQYRGISTFMMEMKETATVIKKC-TENSLVIID 122 (185)
Q Consensus 67 --~~v~~-~~---~~~~----------------~~~~~l~~~~l-~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllD 122 (185)
-|..+ +. ..+. .+.+++..++. .+..++.+.+||+|+++|+++||+| .+|+++|||
T Consensus 167 ~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLD 246 (614)
T KOG0927|consen 167 AEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLD 246 (614)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEec
Confidence 00000 00 0000 12233333333 4567889999999999999999999 999999999
Q ss_pred CCCCCCCcCChhHHHHHHHHHHHhcCCC-eEEEecCh-hHHHHhhccccceeeee-EEEEeccC
Q psy5297 123 ELGRGTSTFDGFGMACSIARELASNRQP-FTLFATHF-HEIALLSRVIPTFRNVH-ESKYLYHT 183 (185)
Q Consensus 123 EP~~g~~~~d~~~~~~~il~~l~~~~~~-~vii~tH~-~~~~~~~d~~~~l~~g~-i~~~~~~~ 183 (185)
|| |+++|.+++.|+- +.|++ ... ++++++|+ ..+..+|+.|+.+++++ +.+.|+.+
T Consensus 247 EP---tnhLDleA~~wLe-e~L~k-~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 247 EP---TNHLDLEAIVWLE-EYLAK-YDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYD 305 (614)
T ss_pred CC---ccCCCHHHHHHHH-HHHHh-ccCceEEEEecchhhhhhHhhhhheecccceeeecCCHH
Confidence 99 8888888888743 66665 444 89999998 78889999999999999 45555543
No 391
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=2.9e-25 Score=204.84 Aligned_cols=102 Identities=14% Similarity=0.037 Sum_probs=84.6
Q ss_pred HHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-C---CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEec
Q psy5297 82 IFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-T---ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFAT 156 (185)
Q Consensus 82 ~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~---~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~t 156 (185)
+++.+++.. .+++++.+||+||+||+.||+++ . +|+++|||||++|+++.+...+.+.+ ..+.+ .|.|||++|
T Consensus 811 ~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L-~~l~~-~G~TVIvi~ 888 (924)
T TIGR00630 811 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVL-QRLVD-QGNTVVVIE 888 (924)
T ss_pred HHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEEe
Confidence 345667765 46889999999999999999999 5 58999999998888888777776654 66665 589999999
Q ss_pred ChhHHHHhhccccce------eeeeEEEEeccCCC
Q psy5297 157 HFHEIALLSRVIPTF------RNVHESKYLYHTNV 185 (185)
Q Consensus 157 H~~~~~~~~d~~~~l------~~g~i~~~~~~~~~ 185 (185)
|+.+....||+++.| ++|++++.|+++++
T Consensus 889 H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 889 HNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 995555689999999 79999999988764
No 392
>KOG0054|consensus
Probab=99.93 E-value=1.3e-25 Score=211.21 Aligned_cols=175 Identities=12% Similarity=0.145 Sum_probs=131.4
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HH
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VF 61 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~ 61 (185)
++.++++|..- +++.+...||+||||+|++||.+||+|+.|||||||+.++ |.| .+
T Consensus 1136 ~G~I~f~~~~~---RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1136 KGEIEFEDLSL---RYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred CCeEEEEEeEE---EeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHH
Confidence 44566666653 3344456799999999999999999999999999999999 443 34
Q ss_pred HHhhCceecCCCCCcc--------h--------hhHHHhhcC-----------cccccccCcCccHHHHHHHHHHHHhC-
Q psy5297 62 LAQIGCFVPCDSATIS--------V--------VDQIFTRVG-----------AADSQYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 62 ~~~~g~~v~~~~~~~~--------~--------~~~~l~~~~-----------l~~~~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
+.+++ .+||+|..++ + +=++++..+ ++....+.-.+||.||||.+++|||+
T Consensus 1213 Rsrls-IIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALL 1291 (1381)
T KOG0054|consen 1213 RSRLS-IIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALL 1291 (1381)
T ss_pred HhcCe-eeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHh
Confidence 56666 9999984433 1 112333333 33344455678999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.++++++|||.|++.|+..-.-+++.+.++.+ ++|||.+-|...-.--|||+++|++|++++.++|.+
T Consensus 1292 r~skILvLDEATAsVD~~TD~lIQ~tIR~~F~---dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1292 RKSKILVLDEATASVDPETDALIQKTIREEFK---DCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAE 1359 (1381)
T ss_pred ccCCEEEEecccccCChHHHHHHHHHHHHHhc---CCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHH
Confidence 99999999999777777653334443434333 699999999855555589999999999999998864
No 393
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=4.1e-25 Score=204.18 Aligned_cols=101 Identities=13% Similarity=0.037 Sum_probs=84.1
Q ss_pred HHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCC---eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEec
Q psy5297 82 IFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TEN---SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFAT 156 (185)
Q Consensus 82 ~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p---~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~t 156 (185)
.++.+++.. .+++++.+||+||+||+.||+++ .+| +++|||||++|+++.+...+.+.+ ..+.+ .|.|||++|
T Consensus 813 ~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L-~~l~~-~G~TVIiit 890 (943)
T PRK00349 813 TLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVL-HRLVD-KGNTVVVIE 890 (943)
T ss_pred HHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEEe
Confidence 345567765 47889999999999999999999 888 999999998888888777666654 66665 589999999
Q ss_pred ChhHHHHhhccccce------eeeeEEEEeccCC
Q psy5297 157 HFHEIALLSRVIPTF------RNVHESKYLYHTN 184 (185)
Q Consensus 157 H~~~~~~~~d~~~~l------~~g~i~~~~~~~~ 184 (185)
|+.+....||+++.| ++|++++.|++++
T Consensus 891 H~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~e 924 (943)
T PRK00349 891 HNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEE 924 (943)
T ss_pred cCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHH
Confidence 995555689999999 7999999988754
No 394
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=2.6e-25 Score=178.07 Aligned_cols=79 Identities=11% Similarity=0.063 Sum_probs=61.3
Q ss_pred cccCcCccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhc
Q psy5297 92 QYRGISTFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSR 166 (185)
Q Consensus 92 ~~~~~~~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d 166 (185)
.++++.+||+||+||++||+++ . +|+++|+|||++|+|+.....+.+.+ ..+.+ +.++|++||..++.++||
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l-~~~~~--~~~ii~~~h~~~~~~~~d 228 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMI-KELSD--GAQFITTTFRPELLEVAD 228 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHH-HHHhC--CCEEEEEecCHHHHhhCC
Confidence 3578899999999999999998 3 58999999996666655544444433 44433 778888999888889999
Q ss_pred cccceee
Q psy5297 167 VIPTFRN 173 (185)
Q Consensus 167 ~~~~l~~ 173 (185)
++++|.-
T Consensus 229 ~i~~l~~ 235 (243)
T cd03272 229 KFYGVKF 235 (243)
T ss_pred EEEEEEE
Confidence 9998764
No 395
>KOG0927|consensus
Probab=99.92 E-value=1.5e-25 Score=192.45 Aligned_cols=161 Identities=19% Similarity=0.224 Sum_probs=121.7
Q ss_pred CCceeeecC------CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHh--hC---------
Q psy5297 12 RHPIVELQG------GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQ--IG--------- 66 (185)
Q Consensus 12 ~~~~l~~~~------~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~--~g--------- 66 (185)
.+|++.+.+ ++-.++++++|.++.++.++++||||+|||||||++ |.+.-..+ ++
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ 465 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQ 465 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhh
Confidence 445555544 122589999999999999999999999999999999 33211000 00
Q ss_pred ---------ceecCCC--CCcchhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297 67 ---------CFVPCDS--ATISVVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG 133 (185)
Q Consensus 67 ---------~~v~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~ 133 (185)
.++|.-+ .....+..++.++|+. +....++++||.|||.|+.+|+++ ..|.+|+|||| |+++|.
T Consensus 466 ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEP---tnhLDi 542 (614)
T KOG0927|consen 466 LDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEP---TNHLDI 542 (614)
T ss_pred cCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCC---CcCCCc
Confidence 0111111 2233467788999998 667899999999999999999999 99999999999 666666
Q ss_pred hHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEE
Q psy5297 134 FGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHES 177 (185)
Q Consensus 134 ~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~ 177 (185)
..+.. +-+.+++ ...+||++||| ..+.++++++++..+|.+.
T Consensus 543 ~tid~-laeaiNe-~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~ 585 (614)
T KOG0927|consen 543 ETIDA-LAEAINE-FPGGVVLVSHDFRLISQVAEEIWVCENGTVT 585 (614)
T ss_pred hhHHH-HHHHHhc-cCCceeeeechhhHHHHHHHHhHhhccCcee
Confidence 65544 3366665 67789999999 8889999999999998864
No 396
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.6e-26 Score=189.64 Aligned_cols=160 Identities=19% Similarity=0.200 Sum_probs=119.8
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhCceecCCCCCcc--
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIGCFVPCDSATIS-- 77 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g~~v~~~~~~~~-- 77 (185)
..+++++++||+++.|+.++++||+|+||||++|++ |.|.+ +.-+| .+||+...+.
T Consensus 274 ~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg-~VPQDtvLFNDt 352 (497)
T COG5265 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG-IVPQDTVLFNDT 352 (497)
T ss_pred ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhC-cCcccceehhhh
Confidence 457899999999999999999999999999999999 44422 34456 9999874332
Q ss_pred h---------------hhHHHhhcCc-------ccccccCc----CccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCc
Q psy5297 78 V---------------VDQIFTRVGA-------ADSQYRGI----STFMMEMKETATVIKKC-TENSLVIIDELGRGTST 130 (185)
Q Consensus 78 ~---------------~~~~l~~~~l-------~~~~~~~~----~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~ 130 (185)
. +....+.+.+ .+-.+..+ -.+|||+|||++|||++ .+|++++|||.||.+|.
T Consensus 353 i~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt 432 (497)
T COG5265 353 IAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDT 432 (497)
T ss_pred HHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhh
Confidence 1 1111222222 12223333 35999999999999999 99999999999777666
Q ss_pred CChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 131 FDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 131 ~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
....++...+ +.+. .|.|.+++-|...-.--||+++++++|+|++.|+.++
T Consensus 433 ~te~~iq~~l-~~~~--~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ 483 (497)
T COG5265 433 HTEQAIQAAL-REVS--AGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEE 483 (497)
T ss_pred hHHHHHHHHH-HHHh--CCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHH
Confidence 6655555544 5555 3889999999866566699999999999999998764
No 397
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.92 E-value=2.8e-25 Score=174.22 Aligned_cols=140 Identities=15% Similarity=0.081 Sum_probs=94.5
Q ss_pred EeeCCceeEEEEccCCCcHHHHHHHH-----HHHHH-------H----------HhhCceecCCCC--Cc------chhh
Q psy5297 31 FKSGEVSFNLVTGPNMGGKSTYIRSI-----GVSVF-------L----------AQIGCFVPCDSA--TI------SVVD 80 (185)
Q Consensus 31 l~i~~g~~~~l~G~NGsGKSTLlk~i-----G~i~~-------~----------~~~g~~v~~~~~--~~------~~~~ 80 (185)
+++.+| +++|+||||||||||+++| |.... . +.++ ++++.+. .+ ++++
T Consensus 18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~-~~f~~~~~~~~~v~r~~~~~~ 95 (204)
T cd03240 18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVK-LAFENANGKKYTITRSLAILE 95 (204)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEE-EEEEeCCCCEEEEEEEhhHhh
Confidence 444566 9999999999999999999 21110 0 1122 4555431 11 2223
Q ss_pred HHHh--hcCcccccccCcCccHHHHHHH------HHHHHhC-CCCeEEEEeCCCCCCCcCChh-HHHHHHHHHHHhcCCC
Q psy5297 81 QIFT--RVGAADSQYRGISTFMMEMKET------ATVIKKC-TENSLVIIDELGRGTSTFDGF-GMACSIARELASNRQP 150 (185)
Q Consensus 81 ~~l~--~~~l~~~~~~~~~~lS~g~~q~------~~ia~~l-~~p~llllDEP~~g~~~~d~~-~~~~~il~~l~~~~~~ 150 (185)
++.. .-...+..++++++||+||+|| +++|+++ .+|+++++|||++++|+.... .+.+.+ ..++++.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l-~~~~~~~~~ 174 (204)
T cd03240 96 NVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEII-EERKSQKNF 174 (204)
T ss_pred ceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHH-HHHHhccCC
Confidence 2210 0111234477899999999996 6788999 999999999997776665555 444433 566552378
Q ss_pred eEEEecChhHHHHhhccccceee
Q psy5297 151 FTLFATHFHEIALLSRVIPTFRN 173 (185)
Q Consensus 151 ~vii~tH~~~~~~~~d~~~~l~~ 173 (185)
++|++||+.+....||+++.|.+
T Consensus 175 ~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 175 QLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred EEEEEEecHHHHhhCCEEEEEee
Confidence 99999999666678999998865
No 398
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.92 E-value=8.6e-25 Score=188.75 Aligned_cols=168 Identities=22% Similarity=0.237 Sum_probs=131.3
Q ss_pred ceeeecC-CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------------HHhhCceec
Q psy5297 14 PIVELQG-GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------LAQIGCFVP 70 (185)
Q Consensus 14 ~~l~~~~-~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------~~~~g~~v~ 70 (185)
|.+++++ +....+.|+||++.+|||++|.|-=|||+|-|+++| |.|.+ ...++ |+|
T Consensus 262 ~~l~v~~l~~~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~-~v~ 340 (500)
T COG1129 262 PVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIA-YVP 340 (500)
T ss_pred cEEEEecCCCCCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCE-eCC
Confidence 4555554 222258999999999999999999999999999999 33322 12234 888
Q ss_pred CCCC------Ccch--------------------------hhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 71 CDSA------TISV--------------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 71 ~~~~------~~~~--------------------------~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
.+.. ..++ ++.+.+.+++. ...+.++++||||.|||+.|||.+ .+|
T Consensus 341 EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p 420 (500)
T COG1129 341 EDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDP 420 (500)
T ss_pred cccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCC
Confidence 7652 1111 22233334432 345688999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
++|||||||+|.|.-...++.+.+ +.+++ .|.+||++|-+ +|+..+|||+++|++|+++.+.+.++
T Consensus 421 ~vLilDEPTRGIDVGAK~eIy~li-~~lA~-~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 421 KVLILDEPTRGIDVGAKAEIYRLI-RELAA-EGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred CEEEECCCCcCcccchHHHHHHHH-HHHHH-CCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 999999999999998888887755 88887 69999999998 99999999999999999998876653
No 399
>KOG0219|consensus
Probab=99.92 E-value=1.6e-25 Score=198.07 Aligned_cols=180 Identities=57% Similarity=0.964 Sum_probs=168.4
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFT 84 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~ 84 (185)
++.+++.+||.++.++...++.||++|+..++++..++|||+.||||.+|..|.+.+++|+|+|||++...+++++.++.
T Consensus 614 rl~l~~~rHp~lE~Qd~~~fIpNdv~le~~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~ 693 (902)
T KOG0219|consen 614 RLELKQSRHPVLEGQDEIPFIPNDVVLEKGKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILT 693 (902)
T ss_pred HHHHHhcccchhhccccCCCCCCccccccCCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHh
Confidence 56788999999998887789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297 85 RVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL 164 (185)
Q Consensus 85 ~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~ 164 (185)
+.|.++..-+..++|+.+|-.-..|+|.+...++++.|||.+||+..|+-.+.|.+-+++..+.++-.|++||.+++..+
T Consensus 694 RVGA~D~q~kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~l 773 (902)
T KOG0219|consen 694 RVGAGDSQLKGISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELTKL 773 (902)
T ss_pred hhccchhhhcchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999888876568889999999999999
Q ss_pred hccccceeeeeEEEEeccCC
Q psy5297 165 SRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 165 ~d~~~~l~~g~i~~~~~~~~ 184 (185)
+.....+++-++.+....++
T Consensus 774 ae~~~~vKn~h~~a~i~~~~ 793 (902)
T KOG0219|consen 774 AEQLPTVKNLHVTAQIENDD 793 (902)
T ss_pred hhhhhhhhhheeeeEecCcc
Confidence 99998888888877766554
No 400
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=1.8e-24 Score=168.92 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=98.9
Q ss_pred eceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHH-------HH-------hhC------ceecCCCCC----c-----
Q psy5297 26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-------LA-------QIG------CFVPCDSAT----I----- 76 (185)
Q Consensus 26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~-------~~-------~~g------~~v~~~~~~----~----- 76 (185)
+.++++++.+| +.+|+||||||||||+.+|..... +. +.+ .+.++.... .
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 90 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQ 90 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHH
Confidence 36677777775 889999999999999999932100 00 001 122332110 1
Q ss_pred chhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-----CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhc--CC
Q psy5297 77 SVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-----TENSLVIIDELGRGTSTFDGFGMACSIARELASN--RQ 149 (185)
Q Consensus 77 ~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-----~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~--~~ 149 (185)
..++++++. .+..++++.+||+|||||++||+++ .+|+++|||||++|+|......+.+.+ ..+.++ .+
T Consensus 91 ~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l-~~~~~~~~~~ 166 (198)
T cd03276 91 DMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLL-VKEAKKQPGR 166 (198)
T ss_pred HHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHH-HHHHhcCCCc
Confidence 123444444 5667889999999999999999876 699999999997777776666565544 444332 23
Q ss_pred CeEEEecCh-hHHHHhhccccceeeee
Q psy5297 150 PFTLFATHF-HEIALLSRVIPTFRNVH 175 (185)
Q Consensus 150 ~~vii~tH~-~~~~~~~d~~~~l~~g~ 175 (185)
.+|+++||+ .++..+ |++.+++.++
T Consensus 167 ~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 167 QFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred EEEEEECCcccccccc-cceeEEEecC
Confidence 589999999 666665 9999888653
No 401
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.91 E-value=3.8e-24 Score=205.79 Aligned_cols=101 Identities=11% Similarity=0.059 Sum_probs=84.3
Q ss_pred HHhhcCcccc-cccCcCccHHHHHHHHHHHHhC-C---CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEec
Q psy5297 82 IFTRVGAADS-QYRGISTFMMEMKETATVIKKC-T---ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFAT 156 (185)
Q Consensus 82 ~l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~---~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~t 156 (185)
+++.+++.+. .++++.+||+||+||++||+++ . +|+++||||||+|+|+.+...+.+.+ ..+++ .|.|||++|
T Consensus 792 ~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL-~~L~~-~G~TVIiIs 869 (1809)
T PRK00635 792 ALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVL-QSLTH-QGHTVVIIE 869 (1809)
T ss_pred HHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHh-cCCEEEEEe
Confidence 4566788775 7899999999999999999999 3 89999999998888777766666654 66766 599999999
Q ss_pred ChhHHHHhhcccccee------eeeEEEEeccCC
Q psy5297 157 HFHEIALLSRVIPTFR------NVHESKYLYHTN 184 (185)
Q Consensus 157 H~~~~~~~~d~~~~l~------~g~i~~~~~~~~ 184 (185)
|+.+..+.||++++|. +|++++.+++++
T Consensus 870 Hdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 870 HNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred CCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 9944448999999996 789999988764
No 402
>KOG0220|consensus
Probab=99.91 E-value=3.5e-24 Score=187.54 Aligned_cols=174 Identities=40% Similarity=0.666 Sum_probs=160.6
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 85 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~ 85 (185)
+-|++.+||+|+-...++++-+|..++ +.-.+..|+|||+|||||.||.+..+.+++|+|+|||+....+++++.++.+
T Consensus 592 laI~qGRHPILe~i~~ek~i~N~t~~t-~~s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IPA~YaS~pIf~RIFtR 670 (867)
T KOG0220|consen 592 LAIKQGRHPILEKISAEKPIANNTYVT-EGSNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVPAEYASFRVFKRIFTR 670 (867)
T ss_pred eeeccCCCchhhhhcccCcccCcceee-cccceEEEECCCCCcchHHHHHHHHHHHHHHhccCcchhhccchHHHHHHHH
Confidence 779999999999777667777888877 5568999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297 86 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS 165 (185)
Q Consensus 86 ~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~ 165 (185)
+|-.|.+.+.-++|-.+|+...+|..-..+.+|++|||..+||+..|+.++.+.+.+++.+ ...+++++||..++++++
T Consensus 671 mg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TSteeGiaityAvCE~lL~-LkayTflATHFldIa~la 749 (867)
T KOG0220|consen 671 MGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEEGIAITYAVCEYLLS-LKAYTFLATHFLDIAAIA 749 (867)
T ss_pred hcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCccccchhhHHHHHHHHHH-hhHhHHHHHHHHHHHHHh
Confidence 9998999999999999999999999999999999999999999999999999999999887 678889999999999999
Q ss_pred ccccceeeeeEEEEec
Q psy5297 166 RVIPTFRNVHESKYLY 181 (185)
Q Consensus 166 d~~~~l~~g~i~~~~~ 181 (185)
..-.-+++-|...+.+
T Consensus 750 n~~paVdnlHF~~q~~ 765 (867)
T KOG0220|consen 750 NYYPAVDNLHFLVQTD 765 (867)
T ss_pred hcCccccceeeeeeec
Confidence 9999999988766554
No 403
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=5.4e-24 Score=171.68 Aligned_cols=80 Identities=8% Similarity=-0.003 Sum_probs=61.6
Q ss_pred cccccCcCccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297 90 DSQYRGISTFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL 164 (185)
Q Consensus 90 ~~~~~~~~~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~ 164 (185)
+..++++.+||+||+||+++|+++ . +|+++|+|||++++|+.....+.+.+ ..+. .|.++|++||+.++.+.
T Consensus 158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l-~~~~--~g~~ii~iSH~~~~~~~ 234 (251)
T cd03273 158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMI-KTHF--KGSQFIVVSLKEGMFNN 234 (251)
T ss_pred HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHH-HHHc--CCCEEEEEECCHHHHHh
Confidence 345678999999999999999987 3 67999999996665555444444433 4443 37899999999888888
Q ss_pred hcccccee
Q psy5297 165 SRVIPTFR 172 (185)
Q Consensus 165 ~d~~~~l~ 172 (185)
||+++-+.
T Consensus 235 ~d~v~~~~ 242 (251)
T cd03273 235 ANVLFRTR 242 (251)
T ss_pred CCEEEEEE
Confidence 99998665
No 404
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=1.1e-23 Score=169.59 Aligned_cols=78 Identities=14% Similarity=0.068 Sum_probs=62.5
Q ss_pred cCcCccHHHHHHHHHHHHhC-CC----CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccc
Q psy5297 94 RGISTFMMEMKETATVIKKC-TE----NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVI 168 (185)
Q Consensus 94 ~~~~~lS~g~~q~~~ia~~l-~~----p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~ 168 (185)
+++.+||+||+||++||+++ .+ |+++|||||++|+|+.....+.+.+ ..+++ .|.++|++||+.++...||++
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i-~~~~~-~g~~vi~isH~~~~~~~~d~i 228 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYI-REQAG-PNFQFIVISLKEEFFSKADAL 228 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHH-HHhcc-CCcEEEEEECCHHHHhhCCeE
Confidence 34589999999999999998 54 8999999997777666655555544 55554 489999999997778899999
Q ss_pred cceee
Q psy5297 169 PTFRN 173 (185)
Q Consensus 169 ~~l~~ 173 (185)
++|..
T Consensus 229 ~~~~~ 233 (247)
T cd03275 229 VGVYR 233 (247)
T ss_pred EEEEe
Confidence 88764
No 405
>KOG0065|consensus
Probab=99.89 E-value=4.1e-24 Score=198.36 Aligned_cols=161 Identities=15% Similarity=0.123 Sum_probs=131.7
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH----------HHHH----------HHHhhCceecCCCCCcc---
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI----------GVSV----------FLAQIGCFVPCDSATIS--- 77 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i----------G~i~----------~~~~~g~~v~~~~~~~~--- 77 (185)
+.+.+|+||+=-+.+|-.++|+|++||||||||++| |.|. +.+..| ||-|.+...+
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~G-YvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSG-YVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccc-eeecccccCcccc
Confidence 557799999999999999999999999999999999 3332 233455 9999874333
Q ss_pred ------------------------hhhHHHhhcCcccccccCcCc----cHHHHHHHHHHHHhC-CCC-eEEEEeCCCCC
Q psy5297 78 ------------------------VVDQIFTRVGAADSQYRGIST----FMMEMKETATVIKKC-TEN-SLVIIDELGRG 127 (185)
Q Consensus 78 ------------------------~~~~~l~~~~l~~~~~~~~~~----lS~g~~q~~~ia~~l-~~p-~llllDEP~~g 127 (185)
.++++++.+++++..+.-++. ||.+||+|+.|+--| .+| .||+|||||+|
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 367788889998888777776 999999999999999 999 99999999777
Q ss_pred CCcCChhHHHHHHHHHHHhcCCCeEEEecCh--hHHHHhhccccceee-eeEEEEeccCC
Q psy5297 128 TSTFDGFGMACSIARELASNRQPFTLFATHF--HEIALLSRVIPTFRN-VHESKYLYHTN 184 (185)
Q Consensus 128 ~~~~d~~~~~~~il~~l~~~~~~~vii~tH~--~~~~~~~d~~~~l~~-g~i~~~~~~~~ 184 (185)
+|......+.+. ++.+++ .|.||+.+=|. .++.+.-|+++.|++ |+.++.|+..+
T Consensus 961 LDsqaA~~i~~~-lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 961 LDSQAAAIVMRF-LRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred ccHHHHHHHHHH-HHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 766664444443 588887 79999999997 677888899999986 78999988653
No 406
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.4e-23 Score=172.87 Aligned_cols=168 Identities=15% Similarity=0.128 Sum_probs=121.7
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHH------------h
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLA------------Q 64 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~------------~ 64 (185)
.++++|.+..|.. +.+-++.||+++++||++-|+|.||||||||++.+ |.|.+.+ +
T Consensus 322 ~lelrnvrfay~~----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~ 397 (546)
T COG4615 322 TLELRNVRFAYQD----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRK 397 (546)
T ss_pred ceeeeeeeeccCc----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHH
Confidence 3556666655544 23778999999999999999999999999999999 5554311 1
Q ss_pred hCceecCCC------------CCcchhhHHHhhcCcccc---cccC--cCccHHHHHHHHHHHHhC-CCCeEEEEeCCCC
Q psy5297 65 IGCFVPCDS------------ATISVVDQIFTRVGAADS---QYRG--ISTFMMEMKETATVIKKC-TENSLVIIDELGR 126 (185)
Q Consensus 65 ~g~~v~~~~------------~~~~~~~~~l~~~~l~~~---~~~~--~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~ 126 (185)
..+-|+.+. .....++.+++++.+.+. .+.. .-.||-|||+|+++.-++ -+.+++++||-
T Consensus 398 LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEW-- 475 (546)
T COG4615 398 LFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEW-- 475 (546)
T ss_pred HHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehh--
Confidence 111222221 222246666766665432 2333 346899999999998888 99999999999
Q ss_pred CCCcCChhHHHHH---HHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEe
Q psy5297 127 GTSTFDGFGMACS---IARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYL 180 (185)
Q Consensus 127 g~~~~d~~~~~~~---il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~ 180 (185)
-...|+...++. ++-.+++ .|+||+.+|||+.-...|||.+.+++|++++..
T Consensus 476 -AADQDPaFRR~FY~~lLp~LK~-qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 476 -AADQDPAFRREFYQVLLPLLKE-QGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred -hccCChHHHHHHHHHHhHHHHH-hCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 556665555443 3555665 799999999998888899999999999997654
No 407
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.88 E-value=6.4e-23 Score=173.65 Aligned_cols=147 Identities=17% Similarity=0.158 Sum_probs=108.7
Q ss_pred eeeceEEEeeC-----CceeEEEEccCCCcHHHHHHHH-HHHHHH------HhhCceecCCC-CCc--c-----------
Q psy5297 24 YIPNDVYFKSG-----EVSFNLVTGPNMGGKSTYIRSI-GVSVFL------AQIGCFVPCDS-ATI--S----------- 77 (185)
Q Consensus 24 ~il~~isl~i~-----~g~~~~l~G~NGsGKSTLlk~i-G~i~~~------~~~g~~v~~~~-~~~--~----------- 77 (185)
..+.++.|+++ .||+++++||||-|||||.|+| |.+.-. -.+ +|=||-- ..+ +
T Consensus 350 k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~v-SyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 350 KTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKV-SYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceE-eecceeecCCCCCcHHHHHHHhhhh
Confidence 35667888764 5689999999999999999999 333211 112 2555532 001 1
Q ss_pred ------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCC
Q psy5297 78 ------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQP 150 (185)
Q Consensus 78 ------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~ 150 (185)
...++++.+.+++.+++++..||||+.||++||.+| .+.+++|||||.+-+|...+...... ++++.++.++
T Consensus 429 ~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv-IRR~~e~~~k 507 (591)
T COG1245 429 AFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV-IRRFIENNEK 507 (591)
T ss_pred hcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH-HHHHHhhcCc
Confidence 244567778889999999999999999999999999 99999999999444444333333333 4777776799
Q ss_pred eEEEecCh-hHHHHhhcccccee
Q psy5297 151 FTLFATHF-HEIALLSRVIPTFR 172 (185)
Q Consensus 151 ~vii~tH~-~~~~~~~d~~~~l~ 172 (185)
|.+++.|| ..+..++||++++.
T Consensus 508 ta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 508 TALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred eEEEEecceehhhhhhceEEEEe
Confidence 99999999 77777899998875
No 408
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=1.1e-22 Score=160.46 Aligned_cols=146 Identities=18% Similarity=0.215 Sum_probs=94.3
Q ss_pred ceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHH-------H----H---hhC-----------------------cee
Q psy5297 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-------L----A---QIG-----------------------CFV 69 (185)
Q Consensus 27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~-------~----~---~~g-----------------------~~v 69 (185)
.++.+++.+ .+.+|+|||||||||||..|..... + . +.| .++
T Consensus 15 ~~~~i~~~~-g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~~ 93 (213)
T cd03277 15 DETEFRPGP-SLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQFL 93 (213)
T ss_pred ceeEEecCC-CeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEEE
Confidence 456666654 5789999999999999999922211 0 0 000 112
Q ss_pred cCCC----CCcchhhHHHhhcCc-ccccccCcCccHHHHHHHHHHHHh----C-CCCeEEEEeCCCCCCCcCChhHHHHH
Q psy5297 70 PCDS----ATISVVDQIFTRVGA-ADSQYRGISTFMMEMKETATVIKK----C-TENSLVIIDELGRGTSTFDGFGMACS 139 (185)
Q Consensus 70 ~~~~----~~~~~~~~~l~~~~l-~~~~~~~~~~lS~g~~q~~~ia~~----l-~~p~llllDEP~~g~~~~d~~~~~~~ 139 (185)
+|+. ..+... +++..++- .+..+..+.+||+||||++.++++ + .+|+++|+|||++|+|+.....+.+.
T Consensus 94 ~q~~~~~~~~~~~~-e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~ 172 (213)
T cd03277 94 PQDRVGEFAKLSPI-ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDM 172 (213)
T ss_pred chHHHHHHHhCChH-hHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHH
Confidence 2221 111122 23333321 234567788999999999887643 3 79999999999888777776666554
Q ss_pred HHHHHHhcCC-CeEEEecCh-hHHHHhhc--cccceeeee
Q psy5297 140 IARELASNRQ-PFTLFATHF-HEIALLSR--VIPTFRNVH 175 (185)
Q Consensus 140 il~~l~~~~~-~~vii~tH~-~~~~~~~d--~~~~l~~g~ 175 (185)
+ ..+.++.| .++|++||+ .+..+.|| +++++.+|+
T Consensus 173 l-~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 173 L-VETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred H-HHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 4 45554224 579999998 67777776 667777776
No 409
>KOG2355|consensus
Probab=99.87 E-value=1.7e-22 Score=156.21 Aligned_cols=167 Identities=16% Similarity=0.171 Sum_probs=114.7
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-H-------HHHHHHhh----------C
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-G-------VSVFLAQI----------G 66 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G-------~i~~~~~~----------g 66 (185)
.+++.+++..|-. ..+++-|+|++++.|..+.++|.||||||||||++ | .|.+.+.. |
T Consensus 13 aievsgl~f~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 13 AIEVSGLQFKYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred eEEEeccEEeccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 4566666655533 24799999999999999999999999999999999 2 12111000 0
Q ss_pred --ceecCCC-------------CCcch--------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 67 --CFVPCDS-------------ATISV--------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 67 --~~v~~~~-------------~~~~~--------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
+|+-.+- ..++. -+.++..++++ ..-+....|.|||+|+.|+.-+ ..-
T Consensus 89 dl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDId--l~WRmHkvSDGqrRRVQicMGLL~Pf 166 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDID--LRWRMHKVSDGQRRRVQICMGLLKPF 166 (291)
T ss_pred ceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheecc--ceEEEeeccccchhhhHHHHhcccce
Confidence 0111100 01111 12222222222 2345668999999999999999 888
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHH---hcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEec
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELA---SNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLY 181 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~---~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~ 181 (185)
+++||||. |-.+|..+...++ +.++ +++|+||+++||. .-++..+++++.+++|+++...+
T Consensus 167 kVLLLDEV---TVDLDVlARadLL-eFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~ 231 (291)
T KOG2355|consen 167 KVLLLDEV---TVDLDVLARADLL-EFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLK 231 (291)
T ss_pred eEEEeeee---EeehHHHHHHHHH-HHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccc
Confidence 99999999 6556655554433 4443 3479999999997 88999999999999999987544
No 410
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=2.2e-22 Score=156.36 Aligned_cols=163 Identities=13% Similarity=0.055 Sum_probs=128.4
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH-----------------HH-----------HHhhCceecCC
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS-----------------VF-----------LAQIGCFVPCD 72 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i-----------------~~-----------~~~~g~~v~~~ 72 (185)
|.-.+++++|++++.||+.+|+|.+|||||-..|.|..+ .+ .++-.+++||+
T Consensus 18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe 97 (330)
T COG4170 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence 445699999999999999999999999999999999222 11 11222478887
Q ss_pred CCCc--c------------------------------hhhHHHhhcCccc---ccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 73 SATI--S------------------------------VVDQIFTRVGAAD---SQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 73 ~~~~--~------------------------------~~~~~l~~~~l~~---~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
+... + ++-+++.++|+.+ ....++.+|..|+-|++.||.|+ .+|
T Consensus 98 P~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqP 177 (330)
T COG4170 98 PQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQP 177 (330)
T ss_pred chhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCC
Confidence 6211 1 2445677778754 45688999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++|.|||++.+++.....+.++ +..+++..|.+|++++|| ..+.+.||++-+|.-|.-++....++
T Consensus 178 rLLIADEPTN~~e~~Tq~QifRL-Ls~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~ 245 (330)
T COG4170 178 RLLIADEPTNSMEPTTQAQIFRL-LSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEE 245 (330)
T ss_pred ceEeccCCCcccCccHHHHHHHH-HHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhH
Confidence 99999999777777776666554 477887779999999999 88999999999999998766665543
No 411
>KOG0218|consensus
Probab=99.87 E-value=5.6e-22 Score=174.05 Aligned_cols=172 Identities=41% Similarity=0.704 Sum_probs=154.0
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFT 84 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~ 84 (185)
.+-+++.+||+++.-.+..+|+||+.++-+.+.+..|+|||+.|||.++|.++.+.+++|+|+|||++...+++++.++.
T Consensus 799 eI~ikngRhPvIe~Ll~d~fVPNdi~ls~egerc~IITGPNMGGKSsyIrQvALitIMAQiGsfVPAeea~l~Ifdgvlt 878 (1070)
T KOG0218|consen 799 EIIIKNGRHPVIESLLVDYFVPNDIMLSPEGERCNIITGPNMGGKSSYIRQVALITIMAQIGSFVPAEEARLSIFDGVLT 878 (1070)
T ss_pred hhhhhcCCCchHHHHhhhccCCCcceecCCCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCccchHHhhhhHHhhHHH
Confidence 45689999999985444458999999999988999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297 85 RVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL 164 (185)
Q Consensus 85 ~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~ 164 (185)
++|..+......++|..+|..-+.|.+-.+..+++||||.++||+..|+.++..+.++++.+...+-++++||+..+.++
T Consensus 879 RmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDElGRGTsThDGiAIsYAtL~yf~~~~k~l~LFvTHfP~l~ei 958 (1070)
T KOG0218|consen 879 RMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDELGRGTSTHDGIAISYATLKYFSELSKCLILFVTHFPMLGEI 958 (1070)
T ss_pred hhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHhhcCCCccccchhHHHHHHHHHHHhhceeEEeeecCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999998899987667889999999888777
Q ss_pred hcccc-ceeeeeE
Q psy5297 165 SRVIP-TFRNVHE 176 (185)
Q Consensus 165 ~d~~~-~l~~g~i 176 (185)
..+.. .+.+.++
T Consensus 959 e~~f~gqv~nyHm 971 (1070)
T KOG0218|consen 959 ESGFPGQVRNYHM 971 (1070)
T ss_pred hcCCCccccceee
Confidence 65432 3444444
No 412
>KOG0062|consensus
Probab=99.86 E-value=2.4e-22 Score=172.00 Aligned_cols=149 Identities=15% Similarity=0.129 Sum_probs=117.5
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH-------HH--HHhhCceecCCCC-------------------
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS-------VF--LAQIGCFVPCDSA------------------- 74 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i-------~~--~~~~g~~v~~~~~------------------- 74 (185)
..+.+++++++.-+.++++|+||+||||++|++ |.. .. +.+++ |..|...
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~-~f~Qhhvd~l~~~v~~vd~~~~~~pG 456 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIK-YFAQHHVDFLDKNVNAVDFMEKSFPG 456 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceec-chhHhhhhHHHHHhHHHHHHHHhCCC
Confidence 588999999999999999999999999999999 211 11 11223 4444320
Q ss_pred -CcchhhHHHhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCe
Q psy5297 75 -TISVVDQIFTRVGAADS-QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPF 151 (185)
Q Consensus 75 -~~~~~~~~l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~ 151 (185)
....+..-+..+|++.. ....+.+||||||-|+++|... .+|-+|+|||| |+.+|.+++..+ .+.++. .+..
T Consensus 457 ~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEP---TNhLD~dsl~AL-~~Al~~-F~GG 531 (582)
T KOG0062|consen 457 KTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEP---TNHLDRDSLGAL-AKALKN-FNGG 531 (582)
T ss_pred CCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCC---CccccHHHHHHH-HHHHHh-cCCc
Confidence 01135566778888743 4555799999999999999998 99999999999 999998888664 477776 7778
Q ss_pred EEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297 152 TLFATHF-HEIALLSRVIPTFRNVHESK 178 (185)
Q Consensus 152 vii~tH~-~~~~~~~d~~~~l~~g~i~~ 178 (185)
||++||| +.+..+|+++|++++|+|.-
T Consensus 532 Vv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 532 VVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred EEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999 77888999999999999864
No 413
>KOG0066|consensus
Probab=99.85 E-value=3.9e-22 Score=168.69 Aligned_cols=151 Identities=16% Similarity=0.128 Sum_probs=114.6
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHH--HHhhC-ceecCCC-------------------------
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF--LAQIG-CFVPCDS------------------------- 73 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~--~~~~g-~~v~~~~------------------------- 73 (185)
++..+.+.|+.|-.|+.|+|+||||-|||||||-|+.-.+ -.++- .++-|+.
T Consensus 276 Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee 355 (807)
T KOG0066|consen 276 GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEE 355 (807)
T ss_pred cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHH
Confidence 3568889999999999999999999999999999943111 00000 0000000
Q ss_pred -------------------------------CCcchhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297 74 -------------------------------ATISVVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVI 120 (185)
Q Consensus 74 -------------------------------~~~~~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll 120 (185)
.--.++..++.-+|+. +..+++...||||+|.|+++||+| .+|.++.
T Consensus 356 ~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLM 435 (807)
T KOG0066|consen 356 AKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLM 435 (807)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeee
Confidence 0011355677777776 456788899999999999999999 9999999
Q ss_pred EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEE
Q psy5297 121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHES 177 (185)
Q Consensus 121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~ 177 (185)
|||| |+.+|..+..|+- .+|.- ...|.+|+||| ..+..+|+.|+.+++.++-
T Consensus 436 LDEP---TNHLDLNAVIWLd-NYLQg-WkKTLLIVSHDQgFLD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 436 LDEP---TNHLDLNAVIWLD-NYLQG-WKKTLLIVSHDQGFLDSVCTDIIHLDNQKLH 488 (807)
T ss_pred ecCC---ccccccceeeehh-hHHhh-hhheeEEEecccchHHHHHHHHhhhhhhhhh
Confidence 9999 8999988777743 44443 67899999999 8888999999999987764
No 414
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.85 E-value=5.8e-21 Score=168.05 Aligned_cols=148 Identities=15% Similarity=0.106 Sum_probs=107.3
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH--------HHHHhh-CceecCCCCCc---------------
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS--------VFLAQI-GCFVPCDSATI--------------- 76 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i--------~~~~~~-g~~v~~~~~~~--------------- 76 (185)
+++..+++.+|++++|+.+.|.||||||||||+|+|+.+ .+-... ..|+||.+-..
T Consensus 404 ~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~ 483 (604)
T COG4178 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAP 483 (604)
T ss_pred CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCC
Confidence 346789999999999999999999999999999999433 222111 24777765111
Q ss_pred ----chhhHHHhhcCccccc------ccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHH
Q psy5297 77 ----SVVDQIFTRVGAADSQ------YRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELA 145 (185)
Q Consensus 77 ----~~~~~~l~~~~l~~~~------~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~ 145 (185)
..+.+++.++++++.. ++--..||+|||||+++||.+ ++|++++|||- |+.+|...-.. +.+.++
T Consensus 484 ~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEA---TsALDe~~e~~-l~q~l~ 559 (604)
T COG4178 484 DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA---TSALDEETEDR-LYQLLK 559 (604)
T ss_pred CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecc---hhccChHHHHH-HHHHHH
Confidence 1244567777876543 333457999999999999999 99999999999 55555443333 334444
Q ss_pred hc-CCCeEEEecChhHHHHhhcccccee
Q psy5297 146 SN-RQPFTLFATHFHEIALLSRVIPTFR 172 (185)
Q Consensus 146 ~~-~~~~vii~tH~~~~~~~~d~~~~l~ 172 (185)
++ .+.|||-++|...+..+.++.+-+.
T Consensus 560 ~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 560 EELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hhCCCCEEEEeccchhhHHHHhhheeec
Confidence 43 5899999999987777776655443
No 415
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.85 E-value=5e-21 Score=147.20 Aligned_cols=138 Identities=18% Similarity=0.166 Sum_probs=85.7
Q ss_pred EEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHh----hCc-------eecCCC--CCcc-hhhHHHhhcCcccccccC
Q psy5297 30 YFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ----IGC-------FVPCDS--ATIS-VVDQIFTRVGAADSQYRG 95 (185)
Q Consensus 30 sl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~----~g~-------~v~~~~--~~~~-~~~~~l~~~~l~~~~~~~ 95 (185)
.+...++.+.+|+||||||||++|..|........ ... ++-... .... .+++-+..+ ......+
T Consensus 16 ~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~~~~~ 93 (178)
T cd03239 16 TVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLV--LQGKVEQ 93 (178)
T ss_pred EEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEe--cCCcCcc
Confidence 33333334999999999999999999954322100 000 000000 0000 011111111 1111222
Q ss_pred cCccHHHHHHHHHHHHhC-----CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccc
Q psy5297 96 ISTFMMEMKETATVIKKC-----TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPT 170 (185)
Q Consensus 96 ~~~lS~g~~q~~~ia~~l-----~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~ 170 (185)
+ ||+||+||+++|+++ .+|+++++|||++++|+.....+.+.+ ..+.+ .+.++|++||+.+....+|+++.
T Consensus 94 ~--LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L-~~~~~-~g~tiIiiSH~~~~~~~adrvi~ 169 (178)
T cd03239 94 I--LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMI-KEMAK-HTSQFIVITLKKEMFENADKLIG 169 (178)
T ss_pred c--CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEEECCHHHHhhCCeEEE
Confidence 3 999999999999986 489999999997776666555554543 55555 47899999999666778999998
Q ss_pred eee
Q psy5297 171 FRN 173 (185)
Q Consensus 171 l~~ 173 (185)
+..
T Consensus 170 i~~ 172 (178)
T cd03239 170 VLF 172 (178)
T ss_pred EEE
Confidence 876
No 416
>KOG0066|consensus
Probab=99.84 E-value=3.6e-21 Score=162.87 Aligned_cols=150 Identities=17% Similarity=0.136 Sum_probs=108.2
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--HHhhCceecCCC-----CCcch-------
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--LAQIGCFVPCDS-----ATISV------- 78 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--~~~~g~~v~~~~-----~~~~~------- 78 (185)
+.++.+.+++|.|.--..++|+||||.||||||+++ |...- +-++| +..|.. ..-+.
T Consensus 598 gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG-~FdQh~~E~L~~Eetp~EyLqr~ 676 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIG-WFDQHANEALNGEETPVEYLQRK 676 (807)
T ss_pred CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeee-chhhhhHHhhccccCHHHHHHHh
Confidence 456789999999999999999999999999999999 33221 11234 333332 11122
Q ss_pred -------hhHHHhhcCccccc-ccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCC
Q psy5297 79 -------VDQIFTRVGAADSQ-YRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQ 149 (185)
Q Consensus 79 -------~~~~l~~~~l~~~~-~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~ 149 (185)
+...+..||+.... .-.+..|||||+.|+++|... ..|++|||||| |+.+|..++-. +.+.+++ .+
T Consensus 677 FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP---TNNLDIESIDA-LaEAIne-y~ 751 (807)
T KOG0066|consen 677 FNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP---TNNLDIESIDA-LAEAINE-YN 751 (807)
T ss_pred cCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC---CCCcchhhHHH-HHHHHHh-cc
Confidence 33445556664332 345789999999999999987 99999999999 77777666644 3366665 67
Q ss_pred CeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297 150 PFTLFATHF-HEIALLSRVIPTFRNVHE 176 (185)
Q Consensus 150 ~~vii~tH~-~~~~~~~d~~~~l~~g~i 176 (185)
..||++||| ..+.+.....|++.+..|
T Consensus 752 GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 752 GGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CcEEEEecccceeeecCceEEEEccCCh
Confidence 789999999 556666667788877655
No 417
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.82 E-value=1.3e-20 Score=159.79 Aligned_cols=136 Identities=19% Similarity=0.233 Sum_probs=99.7
Q ss_pred eCCceeEEEEccCCCcHHHHHHHH-HHHH---------------H-----------HHhh--C--------ceecCCC--
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSI-GVSV---------------F-----------LAQI--G--------CFVPCDS-- 73 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---------------~-----------~~~~--g--------~~v~~~~-- 73 (185)
..+|++++|+||||-||||-+|++ |.+. + +..+ + .||..-+
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 478999999999999999999999 3221 0 0000 0 0111100
Q ss_pred ------------CCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHH-
Q psy5297 74 ------------ATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACS- 139 (185)
Q Consensus 74 ------------~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~- 139 (185)
..-..++++.++++++..+++.+++||||+.||++||.++ .+.+++++||| ++.+|.......
T Consensus 177 ~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEp---sSyLDi~qRl~~a 253 (591)
T COG1245 177 VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEP---SSYLDIRQRLNAA 253 (591)
T ss_pred hcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCC---cccccHHHHHHHH
Confidence 1112577888999999999999999999999999999999 99999999999 666665554432
Q ss_pred -HHHHHHhcCCCeEEEecChhHH-HHhhcccccee
Q psy5297 140 -IARELASNRQPFTLFATHFHEI-ALLSRVIPTFR 172 (185)
Q Consensus 140 -il~~l~~~~~~~vii~tH~~~~-~~~~d~~~~l~ 172 (185)
+++.+.+ .+++||++.||.-+ ..++|.+-++.
T Consensus 254 r~Irel~~-~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 254 RVIRELAE-DGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHhc-cCCeEEEEechHHHHHHhhheeEEEe
Confidence 3577776 48999999999554 45677665553
No 418
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.81 E-value=6.3e-20 Score=176.98 Aligned_cols=101 Identities=11% Similarity=0.068 Sum_probs=83.7
Q ss_pred HhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CC---CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecC
Q psy5297 83 FTRVGAADS-QYRGISTFMMEMKETATVIKKC-TE---NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATH 157 (185)
Q Consensus 83 l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~---p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH 157 (185)
+..+|+... +.++..+|||||.||+.||..| .+ +.+++|||||.|+.+.|...+...+ +.|.+ .|.|||+++|
T Consensus 1683 L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l-~~L~~-~g~tvivieH 1760 (1809)
T PRK00635 1683 LIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQL-RTLVS-LGHSVIYIDH 1760 (1809)
T ss_pred HHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHH-HHHHh-cCCeEEEEeC
Confidence 344565543 5788999999999999999999 54 6899999999998888877777654 77876 7999999999
Q ss_pred hhHHHHhhccccce------eeeeEEEEeccCCC
Q psy5297 158 FHEIALLSRVIPTF------RNVHESKYLYHTNV 185 (185)
Q Consensus 158 ~~~~~~~~d~~~~l------~~g~i~~~~~~~~~ 185 (185)
+.++.+.||.++-| +.|+|++.|+|+++
T Consensus 1761 ~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i 1794 (1809)
T PRK00635 1761 DPALLKQADYLIEMGPGSGKTGGKILFSGPPKDI 1794 (1809)
T ss_pred CHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHH
Confidence 98888889999865 46899999998764
No 419
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.81 E-value=8.8e-20 Score=163.08 Aligned_cols=99 Identities=14% Similarity=0.032 Sum_probs=81.9
Q ss_pred hcCccc-ccccCcCccHHHHHHHHHHHHhC-CC---CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChh
Q psy5297 85 RVGAAD-SQYRGISTFMMEMKETATVIKKC-TE---NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFH 159 (185)
Q Consensus 85 ~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~---p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~ 159 (185)
.+|+.. .+.++..+||||+.||+-+|.-| .. ..+++|||||.|+-..|...+... +.+|.. .|-|||++.|+.
T Consensus 808 dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~V-L~rLvd-~GnTViVIEHNL 885 (935)
T COG0178 808 DVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEV-LHRLVD-KGNTVIVIEHNL 885 (935)
T ss_pred HcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHH-HHHHHh-CCCEEEEEeccc
Confidence 345543 25788899999999999999988 43 489999999888888887777664 478877 699999999999
Q ss_pred HHHHhhccccce------eeeeEEEEeccCCC
Q psy5297 160 EIALLSRVIPTF------RNVHESKYLYHTNV 185 (185)
Q Consensus 160 ~~~~~~d~~~~l------~~g~i~~~~~~~~~ 185 (185)
++.+.||.++=| ..|+|++.|+|+++
T Consensus 886 dVIk~AD~IIDLGPeGG~~GG~iva~GTPeev 917 (935)
T COG0178 886 DVIKTADWIIDLGPEGGDGGGEIVASGTPEEV 917 (935)
T ss_pred ceEeecCEEEEcCCCCCCCCceEEEecCHHHH
Confidence 999999988754 47999999999864
No 420
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.81 E-value=7e-20 Score=153.99 Aligned_cols=155 Identities=20% Similarity=0.245 Sum_probs=114.0
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHHHHHh----------------hCceecCCC-CC--------
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSVFLAQ----------------IGCFVPCDS-AT-------- 75 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~~~~~----------------~g~~v~~~~-~~-------- 75 (185)
..+++.|+||++++|++++++|++||||||+|++| |....... +...+|... +.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence 45799999999999999999999999999999999 44322111 112333322 11
Q ss_pred --------cchhhHHHhhcCcccc--cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHH
Q psy5297 76 --------ISVVDQIFTRVGAADS--QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAREL 144 (185)
Q Consensus 76 --------~~~~~~~l~~~~l~~~--~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l 144 (185)
...+.+++.+.|+.+. ..++.++||.||+.|+.||+++ ..|.+++.||..+-+|......+... +..+
T Consensus 475 hl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArk-isel 553 (593)
T COG2401 475 HLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARK-ISEL 553 (593)
T ss_pred HHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHH-HHHH
Confidence 1134567777777653 4677899999999999999999 99999999999555555443333333 3677
Q ss_pred HhcCCCeEEEecChhH-HHHh-hccccceeeeeEE
Q psy5297 145 ASNRQPFTLFATHFHE-IALL-SRVIPTFRNVHES 177 (185)
Q Consensus 145 ~~~~~~~vii~tH~~~-~~~~-~d~~~~l~~g~i~ 177 (185)
+++.+.|.+++||..+ ..++ -|+++.+.-|++.
T Consensus 554 aRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 554 AREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 7668999999999944 5567 6998888877653
No 421
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.8e-19 Score=145.43 Aligned_cols=76 Identities=16% Similarity=0.088 Sum_probs=59.0
Q ss_pred CccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce
Q psy5297 97 STFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF 171 (185)
Q Consensus 97 ~~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l 171 (185)
.+||+||+||+++|+++ . +|+++++|||++++++.....+.+.+ ..+.+ +.++|++||+..+..+||+++.+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l-~~~~~--~~tii~isH~~~~~~~~d~~~~l 245 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKL-KELSR--SHQVLCITHLPQVAAMADNHFLV 245 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHH-HHHhC--CCEEEEEechHHHHHhcCcEEEE
Confidence 34999999999999753 3 99999999996666665544444433 44443 68999999996678899999999
Q ss_pred eeee
Q psy5297 172 RNVH 175 (185)
Q Consensus 172 ~~g~ 175 (185)
.++.
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 8863
No 422
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.80 E-value=2e-19 Score=153.65 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=125.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHhhC-ceecCCC------C
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQIG-CFVPCDS------A 74 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~~g-~~v~~~~------~ 74 (185)
...++|+||++..|||++|.|-.|-|-+.|+.+| |.|.+ +...| +|+|.+. .
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~ 350 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVL 350 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCcccc
Confidence 4679999999999999999999999999999999 22221 11111 3888876 1
Q ss_pred Ccch----------------------------hhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCC
Q psy5297 75 TISV----------------------------VDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDEL 124 (185)
Q Consensus 75 ~~~~----------------------------~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP 124 (185)
.+++ +.++++.|++. .....++.+||||.+||+-+||-+ .+|++|+..+|
T Consensus 351 ~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qP 430 (501)
T COG3845 351 DLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQP 430 (501)
T ss_pred CccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCC
Confidence 2222 33445566654 345667899999999999999999 99999999999
Q ss_pred CCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 125 GRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 125 ~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+|+|.-..+.+.+.+ ...++ .|+.|+++|-+ +++..+|||+.+|.+|+++...++++
T Consensus 431 TrGLDvgA~~~I~~~l-~e~r~-~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 431 TRGLDVGAIEFIHERL-LELRD-AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred CccccHHHHHHHHHHH-HHHHh-cCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 8887776666666655 34444 69999999998 99999999999999999998877654
No 423
>KOG0060|consensus
Probab=99.79 E-value=7.4e-19 Score=152.43 Aligned_cols=147 Identities=13% Similarity=0.115 Sum_probs=108.7
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHH----------H--hhCceecCCCCC----------cc--
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL----------A--QIGCFVPCDSAT----------IS-- 77 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~----------~--~~g~~v~~~~~~----------~~-- 77 (185)
+..+..|+||++++|+-+.|+||||||||+|||++|..+-. . +-..|+||.|.. +|
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK 526 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence 56688999999999999999999999999999999765431 1 212489998721 11
Q ss_pred ------------hhhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh
Q psy5297 78 ------------VVDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG 133 (185)
Q Consensus 78 ------------~~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~ 133 (185)
.+..+++.+++.+. ...-...||+||+||+++||.+ ++|++-+|||- |+.++
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~---TSAv~- 602 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDEC---TSAVT- 602 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeech---hhhcc-
Confidence 23344444443321 2233568999999999999999 99999999999 55566
Q ss_pred hHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceee
Q psy5297 134 FGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRN 173 (185)
Q Consensus 134 ~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~ 173 (185)
......+-+.+++ .|.|.|-++|...+.++=|.++-|+.
T Consensus 603 ~dvE~~~Yr~~r~-~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 603 EDVEGALYRKCRE-MGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHHHH-cCCeEEEeccHHHHHhhhhEEEEecC
Confidence 3344445456665 69999999999888888777777764
No 424
>KOG0217|consensus
Probab=99.76 E-value=2.3e-18 Score=155.94 Aligned_cols=175 Identities=44% Similarity=0.700 Sum_probs=143.5
Q ss_pred eEEEcccCCceeeecC-CceeeeceEEEee-CCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHH
Q psy5297 5 TLVLNQCRHPIVELQG-GVSYIPNDVYFKS-GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQI 82 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~-~~~~il~~isl~i-~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~ 82 (185)
.+.++..+||.++..- +..++.|++.+.- .+..+..++|||.+|||||||..+...+++|+|+|||+.....+.++.+
T Consensus 866 ~l~~~~~~Hpcfsl~s~~~~fipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI 945 (1125)
T KOG0217|consen 866 FLIVKGLRHPCFSLPSTGTSFIPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRI 945 (1125)
T ss_pred eeEEecccCceeecCcCCCccccchhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHH
Confidence 6788999999888765 4578999999984 4445566999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHH
Q psy5297 83 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIA 162 (185)
Q Consensus 83 l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~ 162 (185)
+.++|..+..-...++|--+-..--.|.+..+..+++++||..+||+..|+.++...+++++....++-.+++||++.+.
T Consensus 946 ~tRlGA~D~im~g~STF~vELsET~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~ 1025 (1125)
T KOG0217|consen 946 FTRLGANDDIMSGESTFFVELSETKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLC 1025 (1125)
T ss_pred hhhcccccchhcCCceEEEeccchHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccchh
Confidence 99999988888888877544444445666668899999999999999999999999999999975678889999996655
Q ss_pred HhhccccceeeeeEEEE
Q psy5297 163 LLSRVIPTFRNVHESKY 179 (185)
Q Consensus 163 ~~~d~~~~l~~g~i~~~ 179 (185)
....+-..++.+++-..
T Consensus 1026 ~~~~~~p~Vrl~~Ma~~ 1042 (1125)
T KOG0217|consen 1026 VDFMHHPQVRLLHMACV 1042 (1125)
T ss_pred HhhhcCccccchhheee
Confidence 44444444555555443
No 425
>KOG0064|consensus
Probab=99.74 E-value=3.1e-18 Score=147.49 Aligned_cols=145 Identities=16% Similarity=0.080 Sum_probs=104.4
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHH---------HhhCceecCCC-CCcc--------------
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL---------AQIGCFVPCDS-ATIS-------------- 77 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~---------~~~g~~v~~~~-~~~~-------------- 77 (185)
...++..++|++++|-.+.|+||||||||+|+|+||.++-- .+...|+||.| +...
T Consensus 494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~ 573 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQ 573 (728)
T ss_pred cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHH
Confidence 45688999999999999999999999999999999776531 22335899977 1111
Q ss_pred ---------hhhHHHhhcCcccccc---------cCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297 78 ---------VVDQIFTRVGAADSQY---------RGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMAC 138 (185)
Q Consensus 78 ---------~~~~~l~~~~l~~~~~---------~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~ 138 (185)
-...++..+.+++... ..-..||||+|||+++||.+ ++|+..+|||-|+..+..- ..
T Consensus 574 ~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidv----E~ 649 (728)
T KOG0064|consen 574 MKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDV----EG 649 (728)
T ss_pred HHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccch----HH
Confidence 1233444444433222 22346999999999999999 9999999999966655432 33
Q ss_pred HHHHHHHhcCCCeEEEecChhHHHHhhccccce
Q psy5297 139 SIARELASNRQPFTLFATHFHEIALLSRVIPTF 171 (185)
Q Consensus 139 ~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l 171 (185)
.+.+..+. .|.+.+-+||...+-.+-+.++-+
T Consensus 650 ~i~~~ak~-~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 650 KIFQAAKD-AGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred HHHHHHHh-cCceEEEeecCccHHHHHHHHHhc
Confidence 34455555 799999999987766666655544
No 426
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.72 E-value=6.5e-18 Score=156.70 Aligned_cols=100 Identities=12% Similarity=0.037 Sum_probs=83.9
Q ss_pred HhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CCC--eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 83 FTRVGAADS-QYRGISTFMMEMKETATVIKKC-TEN--SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 83 l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~p--~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
++.+|+.+. +++++.+||+||+||+.||+++ .+| +++|||||++|+++.+...+.+.+ +.+++ .|.|||++||+
T Consensus 473 L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L-~~L~~-~G~TVIvVeH~ 550 (943)
T PRK00349 473 LVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETL-KHLRD-LGNTLIVVEHD 550 (943)
T ss_pred hhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCC
Confidence 456677765 7999999999999999999999 776 999999998888888877777655 77776 69999999999
Q ss_pred hHHHHhhccccce------eeeeEEEEeccCC
Q psy5297 159 HEIALLSRVIPTF------RNVHESKYLYHTN 184 (185)
Q Consensus 159 ~~~~~~~d~~~~l------~~g~i~~~~~~~~ 184 (185)
.+....||++++| ++|++++.+++++
T Consensus 551 ~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e 582 (943)
T PRK00349 551 EDTIRAADYIVDIGPGAGVHGGEVVASGTPEE 582 (943)
T ss_pred HHHHHhCCEEEEeccccCCCCCEEeeccCHHH
Confidence 4444579999999 9999998887653
No 427
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=7.7e-18 Score=155.93 Aligned_cols=100 Identities=12% Similarity=0.043 Sum_probs=83.2
Q ss_pred HhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CCC--eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 83 FTRVGAADS-QYRGISTFMMEMKETATVIKKC-TEN--SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 83 l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~p--~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
+..+|+... +++++.+||+||+||+.||+++ .+| +++|||||++|+++.+...+...+ +.+++ .|.|||++||+
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L-~~L~~-~G~TVIvVeHd 548 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTL-KRLRD-LGNTVIVVEHD 548 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHH-HHHHh-CCCEEEEEECC
Confidence 345677654 6899999999999999999999 775 899999998888888877776654 77776 59999999999
Q ss_pred hHHHHhhccccce------eeeeEEEEeccCC
Q psy5297 159 HEIALLSRVIPTF------RNVHESKYLYHTN 184 (185)
Q Consensus 159 ~~~~~~~d~~~~l------~~g~i~~~~~~~~ 184 (185)
.+....||++++| ++|++++.+++++
T Consensus 549 ~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~e 580 (924)
T TIGR00630 549 EETIRAADYVIDIGPGAGIHGGEVVASGTPEE 580 (924)
T ss_pred HHHHhhCCEEEEecccccCCCCEEeeccCHHH
Confidence 5545699999999 8999998887643
No 428
>KOG0221|consensus
Probab=99.72 E-value=3.4e-18 Score=148.37 Aligned_cols=155 Identities=41% Similarity=0.752 Sum_probs=132.6
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTR 85 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~ 85 (185)
++++|.+|++.+.-- ..+|+|+.+..-++|++.+|+|||-||||..+|.+|.|++++++|+|||++.+.+..++.++.+
T Consensus 570 l~I~ngrh~l~e~~~-dtfvPNst~iggdkgri~vITGpNasGKSiYlkqvglivfLahIGsFVPAe~A~IGivDrI~tr 648 (849)
T KOG0221|consen 570 LRIQNGRHPLMELCA-DTFVPNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVPAEEAEIGIVDRIFTR 648 (849)
T ss_pred HHHHcCChhHHHHHH-HhcCCCceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhhccccchhhhhcchHHHHHHH
Confidence 457778888655432 3689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCC---CeEEEecChhHHH
Q psy5297 86 VGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQ---PFTLFATHFHEIA 162 (185)
Q Consensus 86 ~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~---~~vii~tH~~~~~ 162 (185)
++-.+......++|.-.-.|.....+..+..+++|+||.+.||+..|+-++...++.++.. +| ..|++.||.+++.
T Consensus 649 i~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~~-rg~~~PrifvcThfheL~ 727 (849)
T KOG0221|consen 649 IHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLA-RGPTCPRIFVCTHFHELV 727 (849)
T ss_pred hhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHHh-cCCCCCeEEEeccHHHhh
Confidence 9877777777888877777766666666889999999999999999999998887777765 34 4599999985543
No 429
>KOG0065|consensus
Probab=99.70 E-value=8.7e-18 Score=156.71 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=125.8
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-----------HHHHHHH---------hhCceecCCCCCcc-----
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-----------GVSVFLA---------QIGCFVPCDSATIS----- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-----------G~i~~~~---------~~g~~v~~~~~~~~----- 77 (185)
..+++|++.-+++|+.+.++||.||||||||+++ |.|.+.+ ....|++|....++
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 3699999999999999999999999999999999 3232211 11237777653222
Q ss_pred ---------------------------hhhHHHhhcCcccccccC-----cCccHHHHHHHHHHHHhC-CCCeEEEEeCC
Q psy5297 78 ---------------------------VVDQIFTRVGAADSQYRG-----ISTFMMEMKETATVIKKC-TENSLVIIDEL 124 (185)
Q Consensus 78 ---------------------------~~~~~l~~~~l~~~~~~~-----~~~lS~g~~q~~~ia~~l-~~p~llllDEP 124 (185)
..+.+++.+|++.-.+.. .+-.|||||+|++++.++ .+++++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 134678888988766544 456999999999999999 99999999999
Q ss_pred CCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh--hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 125 GRGTSTFDGFGMACSIARELASNRQPFTLFATHF--HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 125 ~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~--~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
++|+|....-.+...+ +.+....+.|++++=+. .++-++-|.+.+|.+|++++.|+.++
T Consensus 288 t~GLDSsTal~iik~l-r~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~ 348 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKAL-RQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDE 348 (1391)
T ss_pred cccccHHHHHHHHHHH-HHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHH
Confidence 7777766655555544 55555468898888886 78899999999999999999998765
No 430
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=1e-15 Score=124.84 Aligned_cols=75 Identities=15% Similarity=0.052 Sum_probs=54.7
Q ss_pred cCccHHHHHHHHHHHHhC----------CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHh
Q psy5297 96 ISTFMMEMKETATVIKKC----------TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALL 164 (185)
Q Consensus 96 ~~~lS~g~~q~~~ia~~l----------~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~ 164 (185)
...+|.||+|++.+|+++ .+|+++|+||| ++.+|.....+ +++.+.+ .+ .+++++|+ .++..+
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp---~a~LD~~~~~~-l~~~l~~-~~-q~ii~~~~~~~~~~~ 254 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDV---LAELDLGRQAA-LLDAIEG-RV-QTFVTTTDLADFDAL 254 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCc---chhcCHHHHHH-HHHHhhc-CC-CEEEEeCCchhccch
Confidence 445799999999999874 69999999999 55556554444 3355654 34 45555554 777777
Q ss_pred h---ccccceeeeeE
Q psy5297 165 S---RVIPTFRNVHE 176 (185)
Q Consensus 165 ~---d~~~~l~~g~i 176 (185)
| ++++.+++|++
T Consensus 255 ~~~~~~i~~l~~g~i 269 (270)
T cd03242 255 WLRRAQIFRVDAGTL 269 (270)
T ss_pred hccCccEEEEeCcEE
Confidence 7 67889999986
No 431
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.57 E-value=1.2e-14 Score=114.69 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=45.8
Q ss_pred CccHHHHHHHHHHHHh----C-CCCeEEEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecChhHHHHhhcccc
Q psy5297 97 STFMMEMKETATVIKK----C-TENSLVIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATHFHEIALLSRVIP 169 (185)
Q Consensus 97 ~~lS~g~~q~~~ia~~----l-~~p~llllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH~~~~~~~~d~~~ 169 (185)
..+|+|||.+++||-. - ...++++|||| .+.+|........ +..+. .+..+|++||+..+...||+.+
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEv---d~~LD~~~~~~l~~~l~~~~--~~~Q~ii~Th~~~~~~~a~~~~ 209 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEV---DAALDEQNRKRLADLLKELS--KQSQFIITTHNPEMFEDADKLI 209 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEEST---TTTS-HHHHHHHHHHHHHHT--TTSEEEEE-S-HHHHTT-SEEE
T ss_pred ccccccccccccccccccccccccccccccccc---cccccccccccccccccccc--cccccccccccccccccccccc
Confidence 3899999999998743 2 57889999999 5556655544422 23333 2578999999998999998876
Q ss_pred cee
Q psy5297 170 TFR 172 (185)
Q Consensus 170 ~l~ 172 (185)
.+.
T Consensus 210 ~v~ 212 (220)
T PF02463_consen 210 GVT 212 (220)
T ss_dssp EEE
T ss_pred ccc
Confidence 543
No 432
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=99.57 E-value=4.2e-15 Score=134.86 Aligned_cols=164 Identities=30% Similarity=0.517 Sum_probs=138.6
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCC-CcchhhH
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSA-TISVVDQ 81 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~-~~~~~~~ 81 (185)
+..+.+.+.+||.+.- .+++++.+..+ =..+.++|||-.|||+.||++|...+++|.|.++|.... .++++..
T Consensus 290 ~~~l~l~~~~HPll~~-----~v~~~i~~~~e-~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~ 363 (753)
T COG1193 290 DGVLELLDARHPLLKE-----DVPNDLELGEE-LDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVK 363 (753)
T ss_pred CceEEeccccCccCcc-----ccccccccccc-cceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHH
Confidence 4568899999999872 27788888754 378999999999999999999999999999999999885 8889999
Q ss_pred HHhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHH
Q psy5297 82 IFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI 161 (185)
Q Consensus 82 ~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~ 161 (185)
++...|-+.......++||+-|...+.++.. .+ .++++||.++||+|.++.++...+++++.+ .++.++.+||+.++
T Consensus 364 i~aDIGDeQsIeqsLSTFSshm~~i~~il~~-~d-sLvl~DElg~GTdp~EgaaLai~ile~l~~-~~~~~~~tTH~~el 440 (753)
T COG1193 364 IFADIGDEQSIEQSLSTFSSHMTNIVEILEK-AD-SLVLFDELGSGTDPDEGAALAIAILEDLLE-KPAKIVATTHYREL 440 (753)
T ss_pred hhhccCcHHHHHHHHhhhHHHHHHHHHHHhh-cc-hhHHHHHhhcCCCcchhHHHHHHHHHHHHh-cccceehHhhHHHH
Confidence 9988888888899999999999998888733 23 899999999999999999998888899987 79999999999777
Q ss_pred HHhhccccceeeee
Q psy5297 162 ALLSRVIPTFRNVH 175 (185)
Q Consensus 162 ~~~~d~~~~l~~g~ 175 (185)
..++-....+.+..
T Consensus 441 k~~~~~~~~v~nas 454 (753)
T COG1193 441 KALAAEREGVENAS 454 (753)
T ss_pred HHHHhcchhhhchh
Confidence 76654433333333
No 433
>KOG0063|consensus
Probab=99.55 E-value=9.7e-15 Score=123.52 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=105.0
Q ss_pred ceeeeceEEEeeCCc-----eeEEEEccCCCcHHHHHHHH-HHHHHH-------HhhCceecCCC-C-------------
Q psy5297 22 VSYIPNDVYFKSGEV-----SFNLVTGPNMGGKSTYIRSI-GVSVFL-------AQIGCFVPCDS-A------------- 74 (185)
Q Consensus 22 ~~~il~~isl~i~~g-----~~~~l~G~NGsGKSTLlk~i-G~i~~~-------~~~g~~v~~~~-~------------- 74 (185)
.+.-..++.+.+..| +++..+|.||-|||||++++ |...-. -.+. |=||.- .
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVS-ykpqkispK~~~tvR~ll~~k 426 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVS-YKPQKISPKREGTVRQLLHTK 426 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCccccccee-ccccccCccccchHHHHHHHH
Confidence 345778888888776 68999999999999999999 311000 0111 444432 0
Q ss_pred ------CcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhc
Q psy5297 75 ------TISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASN 147 (185)
Q Consensus 75 ------~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~ 147 (185)
....+.+.++.+.+++..++.+..||||++||+++|..+ ...++++.|||.+-+|...+......+.+.+..
T Consensus 427 Ir~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilh- 505 (592)
T KOG0063|consen 427 IRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILH- 505 (592)
T ss_pred hHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHh-
Confidence 011244556666777888999999999999999999999 999999999995555544333333333344444
Q ss_pred CCCeEEEecCh-hHHHHhhccccceee
Q psy5297 148 RQPFTLFATHF-HEIALLSRVIPTFRN 173 (185)
Q Consensus 148 ~~~~vii~tH~-~~~~~~~d~~~~l~~ 173 (185)
.++|-+++.|| .-...++||+++.+.
T Consensus 506 akktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 506 AKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred ccchhhhhhhHHHHHHhhcceeEEEec
Confidence 57899999999 445568999887753
No 434
>PRK13695 putative NTPase; Provisional
Probab=99.50 E-value=9.2e-14 Score=106.09 Aligned_cols=138 Identities=15% Similarity=0.167 Sum_probs=87.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHH-H-hhCceecCCC------CCcchh------hHHHhhcCc-c-cccccCcCccHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGVSVFL-A-QIGCFVPCDS------ATISVV------DQIFTRVGA-A-DSQYRGISTFMM 101 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~i~~~-~-~~g~~v~~~~------~~~~~~------~~~l~~~~l-~-~~~~~~~~~lS~ 101 (185)
.++|+|+||+|||||++.+..-... + ....|+.++. ..+... ...+...+. . ....+....+|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lsg 81 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLED 81 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehHH
Confidence 4789999999999999988322111 0 1111333321 000000 111112221 1 112344567999
Q ss_pred HHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEE
Q psy5297 102 EMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 102 g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~ 179 (185)
+++.+..+++.. .+|+++++||| ..++..+.. ..+.+ ..+.+ .+.++|+++|+..+..++|++..+.+|++...
T Consensus 82 le~~~~~l~~~~l~~~~~lllDE~-~~~e~~~~~-~~~~l-~~~~~-~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 82 LERIGIPALERALEEADVIIIDEI-GKMELKSPK-FVKAV-EEVLD-SEKPVIATLHRRSVHPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred HHHHHHHHHHhccCCCCEEEEECC-CcchhhhHH-HHHHH-HHHHh-CCCeEEEEECchhhHHHHHHHhccCCcEEEEE
Confidence 999999988877 89999999996 225555533 33434 44444 68999999999888899999999999988543
No 435
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.47 E-value=1.6e-13 Score=111.92 Aligned_cols=53 Identities=9% Similarity=0.130 Sum_probs=37.0
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHH--------------HHhhccccceeeee
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI--------------ALLSRVIPTFRNVH 175 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~--------------~~~~d~~~~l~~g~ 175 (185)
.+|+++++|||+ .. ..+ ..+++.+. .|.++|++||+..+ ..+++|+++|++++
T Consensus 193 ~~P~villDE~~---~~---e~~-~~l~~~~~--~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 193 MSPDVIVVDEIG---RE---EDV-EALLEALH--AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK 259 (270)
T ss_pred CCCCEEEEeCCC---cH---HHH-HHHHHHHh--CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence 699999999993 22 222 33335543 48999999997444 24579999998765
No 436
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.46 E-value=3.1e-13 Score=103.49 Aligned_cols=140 Identities=19% Similarity=0.224 Sum_probs=88.1
Q ss_pred EeeCCceeEEEEccCCCcHHHHHHHHHHHH-HH------------------------Hh------hCceecCCCCCcchh
Q psy5297 31 FKSGEVSFNLVTGPNMGGKSTYIRSIGVSV-FL------------------------AQ------IGCFVPCDSATISVV 79 (185)
Q Consensus 31 l~i~~g~~~~l~G~NGsGKSTLlk~iG~i~-~~------------------------~~------~g~~v~~~~~~~~~~ 79 (185)
+++. -.|+.++|.||+||||||..|+.-. +. .. .| |.......+.++
T Consensus 33 LeF~-apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g-~FlRAEs~yn~a 110 (233)
T COG3910 33 LEFR-APITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIG-FFLRAESFYNVA 110 (233)
T ss_pred cccc-CceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcc-eEEehhHHHHHH
Confidence 4443 4899999999999999999993210 00 00 01 111100111111
Q ss_pred hHHHhhcCc-ccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 80 DQIFTRVGA-ADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 80 ~~~l~~~~l-~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
. .++.+.- ...-.+.....|.|+-=..-+.+.+...-+++||||-+++++.-+-++... +..+.+ .|..+||+||.
T Consensus 111 s-~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~-l~~la~-sGaQ~IiATHS 187 (233)
T COG3910 111 S-YLDEADGEANYGGRSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLAI-LRDLAD-SGAQIIIATHS 187 (233)
T ss_pred H-HHHhhhhhcccCCcchhhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHHH-HHHHHh-cCCeEEEEecC
Confidence 1 2222111 112234466789999888788888888999999999888888765555543 577877 69999999998
Q ss_pred hHHHHhh-ccccceeeee
Q psy5297 159 HEIALLS-RVIPTFRNVH 175 (185)
Q Consensus 159 ~~~~~~~-d~~~~l~~g~ 175 (185)
.-+..+. -+++-++.+-
T Consensus 188 PiLlAiP~A~I~~~~~~g 205 (233)
T COG3910 188 PILLAIPGAEIYEISESG 205 (233)
T ss_pred hhheeCCCcEEEEEecCC
Confidence 6665553 4556666554
No 437
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.41 E-value=7e-13 Score=101.60 Aligned_cols=134 Identities=12% Similarity=0.018 Sum_probs=80.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHH-HhhCceecCCCCCcchhhHHHhhcC----------cccccccCcCccHHHHHH-
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDSATISVVDQIFTRVG----------AADSQYRGISTFMMEMKE- 105 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g~~v~~~~~~~~~~~~~l~~~~----------l~~~~~~~~~~lS~g~~q- 105 (185)
++.|.||.|+|||||.-.+..-... +....|+.-+.. ...+.+.+..+| .....+..+..+|+|++|
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~-~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES-PEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 3689999999999998776332222 112224433321 111111222223 233456777889999987
Q ss_pred ----HHHHHHh-C-CCCeEEEEeCCCCCCCcCChhHHH--HHHHHHHHhcCCCeEEEecCh-hH---------HHHhhcc
Q psy5297 106 ----TATVIKK-C-TENSLVIIDELGRGTSTFDGFGMA--CSIARELASNRQPFTLFATHF-HE---------IALLSRV 167 (185)
Q Consensus 106 ----~~~ia~~-l-~~p~llllDEP~~g~~~~d~~~~~--~~il~~l~~~~~~~vii~tH~-~~---------~~~~~d~ 167 (185)
+..+.+. . .+|+++++|||++.++.-+..... ..++..+++ .|.|+|+++|. .. +..+||.
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ 158 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEGTGFGGGDVEYLVDG 158 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCCcccCcCceeEeeeE
Confidence 2334443 4 799999999997766531121111 113466665 58999999996 33 5678888
Q ss_pred ccceee
Q psy5297 168 IPTFRN 173 (185)
Q Consensus 168 ~~~l~~ 173 (185)
++.|+.
T Consensus 159 ii~l~~ 164 (187)
T cd01124 159 VIRLRL 164 (187)
T ss_pred EEEEEE
Confidence 888763
No 438
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.31 E-value=3.2e-12 Score=114.09 Aligned_cols=76 Identities=16% Similarity=0.102 Sum_probs=61.9
Q ss_pred CccHHHHHHHHHHHHhC-CC----CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce
Q psy5297 97 STFMMEMKETATVIKKC-TE----NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF 171 (185)
Q Consensus 97 ~~lS~g~~q~~~ia~~l-~~----p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l 171 (185)
..+|+||+||+++|+++ .. |+++|||||++|+++.....+...+ ..+.+ +.+||++||+..+...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l-~~l~~--~~~vi~iTH~~~~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKL-AQLSE--RHQVLCVTHLPQVAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHhc--CCEEEEEEChHHHHHhcCeEEEE
Confidence 46899999999999987 53 6999999998887777666555544 56653 78999999997667799999999
Q ss_pred eeee
Q psy5297 172 RNVH 175 (185)
Q Consensus 172 ~~g~ 175 (185)
+++.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
No 439
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.30 E-value=2.1e-11 Score=97.26 Aligned_cols=143 Identities=16% Similarity=0.079 Sum_probs=84.6
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHHHHH-HHhhCceecCCCCCcchhhHHHhhcCcc--ccc-----------ccCcC
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-LAQIGCFVPCDSATISVVDQIFTRVGAA--DSQ-----------YRGIS 97 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~-~~~~g~~v~~~~~~~~~~~~~l~~~~l~--~~~-----------~~~~~ 97 (185)
.+++|.++.|.|++|+|||||...+..-.. .+..+.|+..+........+ ++.++++ +.. -....
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHH-HHHCCCChhHHHhCCCceEEeccccccc
Confidence 468999999999999999999988842211 12223365554322222222 2233321 110 11223
Q ss_pred ccHHHHHHHHHHHHhC---CCCeEEEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecCh-hHHHHhhccccce
Q psy5297 98 TFMMEMKETATVIKKC---TENSLVIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATHF-HEIALLSRVIPTF 171 (185)
Q Consensus 98 ~lS~g~~q~~~ia~~l---~~p~llllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l 171 (185)
..+.++.+.+..+... .+|+++++|||++..+..+...+.+.+ +..+++ .+.|+++++|. ......++++..+
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l 178 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSI 178 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhh
Confidence 3466778888866655 399999999997655666655554432 344455 58899999996 4333333444444
Q ss_pred eeeeE
Q psy5297 172 RNVHE 176 (185)
Q Consensus 172 ~~g~i 176 (185)
.+|.+
T Consensus 179 ~DgvI 183 (234)
T PRK06067 179 CDVYL 183 (234)
T ss_pred eEEEE
Confidence 44444
No 440
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=4.6e-12 Score=120.11 Aligned_cols=84 Identities=10% Similarity=-0.135 Sum_probs=68.0
Q ss_pred ccccccCcCccHHHHHHHHHHHHhC-C----------CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecC
Q psy5297 89 ADSQYRGISTFMMEMKETATVIKKC-T----------ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATH 157 (185)
Q Consensus 89 ~~~~~~~~~~lS~g~~q~~~ia~~l-~----------~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH 157 (185)
....++++.+|||||++++++|+++ . +|+++|+||||.|+|+.....+... +..+.. .|.+|+|+||
T Consensus 941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~-l~~l~~-~g~~i~iisH 1018 (1042)
T TIGR00618 941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGI-LDAIRE-GSKMIGIISH 1018 (1042)
T ss_pred CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHH-HHHHHh-CCCEEEEEeC
Confidence 3456788999999999999999987 5 7999999999777666655555554 467766 6899999999
Q ss_pred h-hHHHHhhccccceeee
Q psy5297 158 F-HEIALLSRVIPTFRNV 174 (185)
Q Consensus 158 ~-~~~~~~~d~~~~l~~g 174 (185)
+ .....+|+++.+++.+
T Consensus 1019 ~~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1019 VPEFRERIPHRILVKKTN 1036 (1042)
T ss_pred cHHHHHhhCCEEEEEECC
Confidence 9 6677899999998753
No 441
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.27 E-value=2.7e-11 Score=96.72 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=65.2
Q ss_pred eeCCceeEEEEccCCCcHHHH-HHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCcc--cc--------cccCcCccH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTY-IRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAA--DS--------QYRGISTFM 100 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTL-lk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~--~~--------~~~~~~~lS 100 (185)
.+++|++++|+||||+||||| ++.+....-.+....|+..+........++ ..+|.+ +. .+.. ..+|
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~-~~~~ 97 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQM-MSLGYDINKKLISGKLLYIPVY-PLLS 97 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH-HHhCCchHHHhhcCcEEEEEec-cccc
Confidence 378999999999999999999 566633221222233665443222222222 333331 10 1111 1244
Q ss_pred HHHHHHHHHHHhC-----CCCeEEEEeCCCCCCCcC-ChhHHHHH--HHHHHHhcCCCeEEEecC
Q psy5297 101 MEMKETATVIKKC-----TENSLVIIDELGRGTSTF-DGFGMACS--IARELASNRQPFTLFATH 157 (185)
Q Consensus 101 ~g~~q~~~ia~~l-----~~p~llllDEP~~g~~~~-d~~~~~~~--il~~l~~~~~~~vii~tH 157 (185)
++..++..+.+.+ .+|+++++|||++++... |....... +++.+++ .|.|+++++|
T Consensus 98 ~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~-~g~tvi~t~~ 161 (230)
T PRK08533 98 GNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS-LNKVIILTAN 161 (230)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh-CCCEEEEEec
Confidence 4443333333322 479999999997776332 33322222 2355555 4777666555
No 442
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.26 E-value=6.2e-12 Score=111.87 Aligned_cols=80 Identities=10% Similarity=0.013 Sum_probs=60.3
Q ss_pred ccCcCccHHHHHHHHHHHHhC-----------CCCeEEEEeCCC-CCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhH
Q psy5297 93 YRGISTFMMEMKETATVIKKC-----------TENSLVIIDELG-RGTSTFDGFGMACSIARELASNRQPFTLFATHFHE 160 (185)
Q Consensus 93 ~~~~~~lS~g~~q~~~ia~~l-----------~~p~llllDEP~-~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~ 160 (185)
+.++.+||+||+||++||+++ .+|+++|||||+ +++|+.....+...+ ..+ .+.+||++||+.+
T Consensus 463 ~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l-~~~---~~~~iiiish~~~ 538 (562)
T PHA02562 463 DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSIL-DSL---KDTNVFVISHKDH 538 (562)
T ss_pred ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHH-HhC---CCCeEEEEECchh
Confidence 346689999999999999875 289999999996 455554444443322 333 3789999999976
Q ss_pred HHHhhccccceee-eeE
Q psy5297 161 IALLSRVIPTFRN-VHE 176 (185)
Q Consensus 161 ~~~~~d~~~~l~~-g~i 176 (185)
....||++++|.+ |+.
T Consensus 539 ~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 539 DPQKFDRHLKMEKVGRF 555 (562)
T ss_pred chhhhhcEEEEEEECCe
Confidence 7788999999987 554
No 443
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.25 E-value=1.8e-11 Score=110.41 Aligned_cols=98 Identities=12% Similarity=0.046 Sum_probs=83.2
Q ss_pred cCccc-ccccCcCccHHHHHHHHHHHHhC-C--CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHH
Q psy5297 86 VGAAD-SQYRGISTFMMEMKETATVIKKC-T--ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI 161 (185)
Q Consensus 86 ~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~--~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~ 161 (185)
+|++. .+++...+||||+.||+.+|..+ + --=+++||||+.|+-+.|...+...+ +.++. .|-|+|++.||++.
T Consensus 468 VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL-~~LRD-lGNTviVVEHDedt 545 (935)
T COG0178 468 VGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETL-KRLRD-LGNTVIVVEHDEDT 545 (935)
T ss_pred cCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHH-HHHHh-cCCeEEEEecCHHH
Confidence 35543 26888999999999999999988 4 45699999999999999988777755 88887 79999999999999
Q ss_pred HHhhccccc------eeeeeEEEEeccCCC
Q psy5297 162 ALLSRVIPT------FRNVHESKYLYHTNV 185 (185)
Q Consensus 162 ~~~~d~~~~------l~~g~i~~~~~~~~~ 185 (185)
...||+++= .+.|+|+++|+++++
T Consensus 546 i~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i 575 (935)
T COG0178 546 IRAADHIIDIGPGAGEHGGEIVAEGTPEEL 575 (935)
T ss_pred HhhcCEEEeeCCCCCcCCCEEEEccCHHHH
Confidence 999999984 568999999998753
No 444
>PRK10869 recombination and repair protein; Provisional
Probab=99.23 E-value=1.3e-11 Score=109.82 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=59.7
Q ss_pred ccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcccccee
Q psy5297 98 TFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFR 172 (185)
Q Consensus 98 ~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~ 172 (185)
.+||||+||++||+++ . +|+++|+|||++|+++.....+...+ ..+++ +.+||++||+..+..+||+.+.+.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l-~~l~~--~~qvi~iTH~~~~~~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLL-RQLGE--STQVMCVTHLPQVAGCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHhc--CCEEEEEecCHHHHHhCCEEEEEe
Confidence 4899999999999987 4 58999999997777776555554533 55543 689999999977889999999988
Q ss_pred ee
Q psy5297 173 NV 174 (185)
Q Consensus 173 ~g 174 (185)
++
T Consensus 507 k~ 508 (553)
T PRK10869 507 KE 508 (553)
T ss_pred cc
Confidence 64
No 445
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.22 E-value=1.3e-11 Score=96.64 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=39.2
Q ss_pred CcCccHHHHHHHHHHHHhC-CCC---eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhH
Q psy5297 95 GISTFMMEMKETATVIKKC-TEN---SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHE 160 (185)
Q Consensus 95 ~~~~lS~g~~q~~~ia~~l-~~p---~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~ 160 (185)
+...+|.|++|.+.++..+ ..+ .++++|||-+++.|.-...+... +..+.+ .+..+|++||...
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~-l~~~~~-~~~QviitTHSp~ 300 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIEL-LKELSK-KNIQVIITTHSPF 300 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHH-HHHTGG-GSSEEEEEES-GG
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHH-HHhhCc-cCCEEEEeCccch
Confidence 4566799999998877665 333 99999999666555333333322 233333 3689999999844
No 446
>PRK03918 chromosome segregation protein; Provisional
Probab=99.21 E-value=1.8e-11 Score=114.06 Aligned_cols=81 Identities=10% Similarity=0.004 Sum_probs=61.8
Q ss_pred ccccCcCccHHHHHHHHH------HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHH
Q psy5297 91 SQYRGISTFMMEMKETAT------VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIAL 163 (185)
Q Consensus 91 ~~~~~~~~lS~g~~q~~~------ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~ 163 (185)
-.+.++..||+||+++++ +++++ .+|+++|+||||+++|+.....+...+ ..+.. .+.+||++||+.++..
T Consensus 781 g~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l-~~~~~-~~~~iiiith~~~~~~ 858 (880)
T PRK03918 781 GKERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIM-ERYLR-KIPQVIIVSHDEELKD 858 (880)
T ss_pred CCcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHH-HHHHh-cCCEEEEEECCHHHHH
Confidence 346788999999999554 45567 899999999996666665555455543 45544 4789999999977888
Q ss_pred hhccccceee
Q psy5297 164 LSRVIPTFRN 173 (185)
Q Consensus 164 ~~d~~~~l~~ 173 (185)
.||++++|..
T Consensus 859 ~~d~~~~l~~ 868 (880)
T PRK03918 859 AADYVIRVSL 868 (880)
T ss_pred hCCeEEEEEe
Confidence 9999999984
No 447
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.20 E-value=3.6e-11 Score=97.00 Aligned_cols=76 Identities=13% Similarity=0.014 Sum_probs=59.4
Q ss_pred CccHHHH--------HHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcc
Q psy5297 97 STFMMEM--------KETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRV 167 (185)
Q Consensus 97 ~~lS~g~--------~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~ 167 (185)
..+|+|+ +|++++|+++ .++++.+| ||..++..+... ..+++.++. .+.+.|+.||........+.
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~--~~i~~~~~~-~~~~~ivls~~la~~~~~pa 202 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMD--DVIFEEFKG-TGNMELVLDRRLAERRIFPA 202 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCccc--chHHHHHhc-CCCcEEEEchHHhhCCCCCe
Confidence 3468999 9999999998 99999999 977776433222 123466665 57899999998777778899
Q ss_pred ccceeeeeEE
Q psy5297 168 IPTFRNVHES 177 (185)
Q Consensus 168 ~~~l~~g~i~ 177 (185)
|.+++.|++.
T Consensus 203 I~vl~s~sr~ 212 (249)
T cd01128 203 IDILKSGTRK 212 (249)
T ss_pred EEEcCCCCcc
Confidence 9999999874
No 448
>KOG0063|consensus
Probab=99.18 E-value=3.6e-11 Score=102.16 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=67.9
Q ss_pred hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHH--HHHHHHhcCCCeEEEe
Q psy5297 79 VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACS--IARELASNRQPFTLFA 155 (185)
Q Consensus 79 ~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~--il~~l~~~~~~~vii~ 155 (185)
.++++..+.+....++.+..+|||+.||.++|.+. +..+++++||| .+.+|....... .++.+.. ....||++
T Consensus 194 ~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEp---SsYLDVKQRLkaA~~IRsl~~-p~~YiIVV 269 (592)
T KOG0063|consen 194 KEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEP---SSYLDVKQRLKAAITIRSLIN-PDRYIIVV 269 (592)
T ss_pred HHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCC---cccchHHHhhhHHHHHHHhhC-CCCeEEEE
Confidence 34456666777788999999999999999999999 99999999999 555665544322 2456554 68899999
Q ss_pred cChhHHHH-hhcccccee
Q psy5297 156 THFHEIAL-LSRVIPTFR 172 (185)
Q Consensus 156 tH~~~~~~-~~d~~~~l~ 172 (185)
.||..+.. +.|-+-.+.
T Consensus 270 EHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 270 EHDLSVLDYLSDFICCLY 287 (592)
T ss_pred EeechHHHhhhcceeEEe
Confidence 99966554 567665543
No 449
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.18 E-value=9.2e-11 Score=86.92 Aligned_cols=120 Identities=15% Similarity=0.156 Sum_probs=62.3
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHH-HhhCceecCCCCCcchhhHH--HhhcCcc---cccccCcCccHHHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDSATISVVDQI--FTRVGAA---DSQYRGISTFMMEMKETATVIK 111 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g~~v~~~~~~~~~~~~~--l~~~~l~---~~~~~~~~~lS~g~~q~~~ia~ 111 (185)
+++|.||||+||||+++.+...... .....|+..+.........+ ....+.. ..........+.+..++...+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 4789999999999999999433221 11122555443222111111 1111111 1111222233344445556666
Q ss_pred hC-CCCeEEEEeCCCCCCCc-------CChh--HHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 112 KC-TENSLVIIDELGRGTST-------FDGF--GMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 112 ~l-~~p~llllDEP~~g~~~-------~d~~--~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
+. .+|+++++|||.+-.+. .+.. .....+.+..++ .+.++++++|.
T Consensus 81 ~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~vv~~~~~ 136 (165)
T cd01120 81 RERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK-GGVTVIFTLQV 136 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc-CCceEEEEEec
Confidence 66 89999999999532211 1111 111112334433 69999999996
No 450
>PRK01156 chromosome segregation protein; Provisional
Probab=99.15 E-value=7.8e-11 Score=110.24 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=58.6
Q ss_pred ccCcCccHHHHHHHHHHH------HhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCC-CeEEEecChhHHHHh
Q psy5297 93 YRGISTFMMEMKETATVI------KKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQ-PFTLFATHFHEIALL 164 (185)
Q Consensus 93 ~~~~~~lS~g~~q~~~ia------~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~-~~vii~tH~~~~~~~ 164 (185)
..++..||+||++++++| +++ .+|++++|||||+++|+.....+...+...++...+ .++|++||+.++...
T Consensus 796 ~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~ 875 (895)
T PRK01156 796 VEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSV 875 (895)
T ss_pred cCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHh
Confidence 356889999999998754 778 899999999995555554444444433223333123 489999999777789
Q ss_pred hcccccee
Q psy5297 165 SRVIPTFR 172 (185)
Q Consensus 165 ~d~~~~l~ 172 (185)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999887
No 451
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.14 E-value=2.3e-11 Score=101.04 Aligned_cols=136 Identities=10% Similarity=0.020 Sum_probs=77.1
Q ss_pred EEEeeCCceeEEEEccCCCcHHHHHHHHH-HHHHHHhhCceecCCCCCcchhhHHHhhcCcc-cccccCcCccHHHHHHH
Q psy5297 29 VYFKSGEVSFNLVTGPNMGGKSTYIRSIG-VSVFLAQIGCFVPCDSATISVVDQIFTRVGAA-DSQYRGISTFMMEMKET 106 (185)
Q Consensus 29 isl~i~~g~~~~l~G~NGsGKSTLlk~iG-~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~ 106 (185)
+++.+..|+.++++||+|||||||++++. .+-- ..+...-.+...+..-. -....+. .........++. .
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~--~~~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~----~ 208 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPK--DERIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTP----K 208 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCc--cccEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCH----H
Confidence 34567789999999999999999999883 2211 11111112221111100 0000010 000001111222 2
Q ss_pred HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCC-eEEEecChhHHHHhhccccceeeeeEEEEecc
Q psy5297 107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQP-FTLFATHFHEIALLSRVIPTFRNVHESKYLYH 182 (185)
Q Consensus 107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~-~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~ 182 (185)
-.+..++ .+|+++++||| .+ .+... +++.+.. |. +++.++|........+|+..+..|++...+.+
T Consensus 209 ~~l~~~Lr~~pd~ii~gE~---r~----~e~~~-~l~a~~~--g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~ 276 (308)
T TIGR02788 209 DLLQSCLRMRPDRIILGEL---RG----DEAFD-FIRAVNT--GHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLD 276 (308)
T ss_pred HHHHHHhcCCCCeEEEecc---CC----HHHHH-HHHHHhc--CCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCC
Confidence 2355567 99999999999 43 22333 3455553 55 56889998667777999998888877655543
No 452
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.13 E-value=3.7e-10 Score=97.77 Aligned_cols=157 Identities=11% Similarity=0.032 Sum_probs=92.1
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceec--CCCCCcc-hhhHHHhhcCcccc-cccCcCc
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVP--CDSATIS-VVDQIFTRVGAADS-QYRGIST 98 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~--~~~~~~~-~~~~~l~~~~l~~~-~~~~~~~ 98 (185)
..+++++ |.+.+|++++|+|+||+|||||+++|.... ....+.+.. +...... .+++.+..-++... .--..++
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~-~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT-SADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc-CCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 4589999 999999999999999999999999984321 111221111 1111111 11111111111100 1111345
Q ss_pred cHHHHHHHHH-----HHHhC---CCCeEEEEe-----------------CCCCCCCcCChhHHHHH--HHHHHHh-cCCC
Q psy5297 99 FMMEMKETAT-----VIKKC---TENSLVIID-----------------ELGRGTSTFDGFGMACS--IARELAS-NRQP 150 (185)
Q Consensus 99 lS~g~~q~~~-----ia~~l---~~p~llllD-----------------EP~~g~~~~d~~~~~~~--il~~l~~-~~~~ 150 (185)
-|.++|-+.. +|..+ ...=++++| || -++.++|+...... +++++.. +.|.
T Consensus 224 ~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~-P~~~G~dp~~~~~l~~ller~~~~~~Gs 302 (438)
T PRK07721 224 QPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEP-PTTKGYTPSVFAILPKLLERTGTNASGS 302 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCC-CccccCCHHHHHHHHHHHHHhcCCCCCC
Confidence 5566666644 22223 344577788 65 24455565544332 3466653 2475
Q ss_pred -----eEEEecChhHHHHhhccccceeeeeEEEEeccC
Q psy5297 151 -----FTLFATHFHEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 151 -----~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
||++.+||.+ ..+||++..+.+|+++..++.+
T Consensus 303 IT~~~TVlv~~hdm~-e~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 303 ITAFYTVLVDGDDMN-EPIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred eeeEEEEEEECCCCC-chhhhhEEEecCEEEEEeccHH
Confidence 9999999943 4899999999999999887653
No 453
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.11 E-value=4.6e-10 Score=87.58 Aligned_cols=116 Identities=15% Similarity=0.107 Sum_probs=63.1
Q ss_pred eEEEEccCCCcHHHHHHHH-HHHHHHHhhCc-eecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 38 FNLVTGPNMGGKSTYIRSI-GVSVFLAQIGC-FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i-G~i~~~~~~g~-~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
+++|.||+||||||+++.+ +.+. ....+. +...++..+.. ......+. ..........|+. .+.+++ .
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~-~~~~~~i~t~e~~~E~~~-~~~~~~i~-q~~vg~~~~~~~~------~i~~aLr~ 73 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN-KNKTHHILTIEDPIEFVH-ESKRSLIN-QREVGLDTLSFEN------ALKAALRQ 73 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh-hcCCcEEEEEcCCccccc-cCccceee-ecccCCCccCHHH------HHHHHhcC
Confidence 6889999999999999987 3321 111111 22222211110 00000000 0001111223332 366777 8
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF 171 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l 171 (185)
+|+++++||| . |.+.+.. .++. .. .|..++.++|........+|+..+
T Consensus 74 ~pd~ii~gEi---r---d~e~~~~-~l~~-a~-~G~~v~~t~Ha~~~~~~~~Rl~~l 121 (198)
T cd01131 74 DPDVILVGEM---R---DLETIRL-ALTA-AE-TGHLVMSTLHTNSAAKTIDRIIDV 121 (198)
T ss_pred CcCEEEEcCC---C---CHHHHHH-HHHH-HH-cCCEEEEEecCCcHHHHHhHHHhh
Confidence 9999999999 3 4444433 3333 34 589999999975555666777654
No 454
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.07 E-value=1.7e-10 Score=81.37 Aligned_cols=34 Identities=18% Similarity=0.046 Sum_probs=32.6
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
..++++++|++++|++++|+||+|||||||++++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALEL 35 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHh
Confidence 4689999999999999999999999999999997
No 455
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.06 E-value=2.6e-10 Score=108.18 Aligned_cols=80 Identities=9% Similarity=-0.104 Sum_probs=61.7
Q ss_pred cccCcCccHHHHHHHHHHHHhC-C--------CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHH-
Q psy5297 92 QYRGISTFMMEMKETATVIKKC-T--------ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI- 161 (185)
Q Consensus 92 ~~~~~~~lS~g~~q~~~ia~~l-~--------~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~- 161 (185)
..+++.+|||||+++++|++++ . +|+++|+||||.++|+.....+... +..+.+ .|.+|+||||..++
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~-l~~l~~-~g~~v~iisH~~~l~ 1020 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDA-LDALNA-SGKTIGVISHVEAMK 1020 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHH-CCCEEEEEecHHHHH
Confidence 4588999999999999999998 5 8999999999777766665555554 477776 69999999997444
Q ss_pred HHhhccccceee
Q psy5297 162 ALLSRVIPTFRN 173 (185)
Q Consensus 162 ~~~~d~~~~l~~ 173 (185)
.++..++.|-..
T Consensus 1021 ~~i~~qi~V~k~ 1032 (1047)
T PRK10246 1021 ERIPVQIKVKKI 1032 (1047)
T ss_pred HhccceEEEEEC
Confidence 445555555543
No 456
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.05 E-value=2e-10 Score=109.20 Aligned_cols=79 Identities=11% Similarity=0.077 Sum_probs=61.3
Q ss_pred ccccCcCccHHHHHHHHHHHHhC-----CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297 91 SQYRGISTFMMEMKETATVIKKC-----TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS 165 (185)
Q Consensus 91 ~~~~~~~~lS~g~~q~~~ia~~l-----~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~ 165 (185)
..+.++..||+||+++++||+++ ..|+++|||||++++|+.....+...+ ..+.+ +.++|++||+.....+|
T Consensus 1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~-~~~~~--~~~~i~~sh~~~~~~~~ 1158 (1179)
T TIGR02168 1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLL-KEFSK--NTQFIVITHNKGTMEVA 1158 (1179)
T ss_pred CccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHH-HHhcc--CCEEEEEEcChhHHHHh
Confidence 35678899999999999999974 467999999997777666555555544 55544 47899999996667889
Q ss_pred cccccee
Q psy5297 166 RVIPTFR 172 (185)
Q Consensus 166 d~~~~l~ 172 (185)
|+++.+.
T Consensus 1159 d~~~~~~ 1165 (1179)
T TIGR02168 1159 DQLYGVT 1165 (1179)
T ss_pred hhHeeee
Confidence 9998654
No 457
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=8e-10 Score=107.07 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=57.0
Q ss_pred ccccCcCccHHHHHH------HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHH---hcCCCeEEEecCh-h
Q psy5297 91 SQYRGISTFMMEMKE------TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELA---SNRQPFTLFATHF-H 159 (185)
Q Consensus 91 ~~~~~~~~lS~g~~q------~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~---~~~~~~vii~tH~-~ 159 (185)
......+.||+||+| |++||+++ .+|++++|||||+|+|+.....+...+...+. +..|.++|++||+ .
T Consensus 1192 ~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~ 1271 (1311)
T TIGR00606 1192 TALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED 1271 (1311)
T ss_pred eecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH
Confidence 334455799999999 99999999 99999999999777766665555544422221 1247899999999 7
Q ss_pred HHHHhhcc
Q psy5297 160 EIALLSRV 167 (185)
Q Consensus 160 ~~~~~~d~ 167 (185)
.+..+|..
T Consensus 1272 ~~~~~~~~ 1279 (1311)
T TIGR00606 1272 FVELLGRS 1279 (1311)
T ss_pred HHHHHhhc
Confidence 77777643
No 458
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.01 E-value=4.4e-10 Score=96.89 Aligned_cols=148 Identities=16% Similarity=0.051 Sum_probs=88.6
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhC--ceecCCCCCcc-hhhHHHhhcCcccc-cccCcCcc
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG--CFVPCDSATIS-VVDQIFTRVGAADS-QYRGISTF 99 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g--~~v~~~~~~~~-~~~~~l~~~~l~~~-~~~~~~~l 99 (185)
.+++. .|.+.+|+.++|+|+||+|||||+++|.... ....+ .++.+...... .+...+..-++... .-...++.
T Consensus 145 raID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~ 222 (432)
T PRK06793 145 KSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNA-KADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDE 222 (432)
T ss_pred EEEec-cceecCCcEEEEECCCCCChHHHHHHHhccC-CCCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCC
Confidence 46666 4999999999999999999999999984321 11112 12333322211 12223333333221 23456788
Q ss_pred HHHHHHHHHHHHhC--------CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce
Q psy5297 100 MMEMKETATVIKKC--------TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF 171 (185)
Q Consensus 100 S~g~~q~~~ia~~l--------~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l 171 (185)
|.++|+|+..+.+. .++-++++|+| |...+...-....+..... .|.+..+.||. .++++|.-..
T Consensus 223 s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDsl---Tr~a~A~reisl~~~e~p~-~G~~~~~~s~l---~~L~ERag~~ 295 (432)
T PRK06793 223 SHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSV---TRFADARRSVDIAVKELPI-GGKTLLMESYM---KKLLERSGKT 295 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcEEEEecch---HHHHHHHHHHHHHhcCCCC-CCeeeeeeccc---hhHHHHhccC
Confidence 99999998855542 57999999999 5555543222212222232 36777777874 4444555555
Q ss_pred eeeeEEEEe
Q psy5297 172 RNVHESKYL 180 (185)
Q Consensus 172 ~~g~i~~~~ 180 (185)
..|.+...+
T Consensus 296 ~~GSiT~~~ 304 (432)
T PRK06793 296 QKGSITGIY 304 (432)
T ss_pred CCcceEEEE
Confidence 788876554
No 459
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.00 E-value=3.5e-10 Score=88.87 Aligned_cols=42 Identities=10% Similarity=-0.029 Sum_probs=32.0
Q ss_pred HHHHHHHHHhC-CCCeEEEEeCCC-----CCCCcCChhHHHHHHHHHHH
Q psy5297 103 MKETATVIKKC-TENSLVIIDELG-----RGTSTFDGFGMACSIARELA 145 (185)
Q Consensus 103 ~~q~~~ia~~l-~~p~llllDEP~-----~g~~~~d~~~~~~~il~~l~ 145 (185)
++++..||+++ .+|+++++|||+ +++|+.....+.+.+ ..++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~-~~~~ 204 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKEL-QAAA 204 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHH-HHHh
Confidence 78889999999 999999999997 776666655555543 4443
No 460
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.97 E-value=4.9e-09 Score=86.14 Aligned_cols=70 Identities=11% Similarity=-0.004 Sum_probs=48.4
Q ss_pred ccHHHHHHHHHHHHhC---CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccc
Q psy5297 98 TFMMEMKETATVIKKC---TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPT 170 (185)
Q Consensus 98 ~lS~g~~q~~~ia~~l---~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~ 170 (185)
.||.|+.+.++++.++ ..|.++++|||-.++-|.-...+...+ ...++ ...|+++||. ..+..+-.+.++
T Consensus 270 eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~-~sAak--~sQv~VsTHS~rLl~~~e~~~v~ 343 (373)
T COG4637 270 ELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELM-RSAAK--RSQVIVSTHSPRLLNAVEEHSVF 343 (373)
T ss_pred hccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHH-HHhhc--cceEEEEeCCHHHHhhccccceE
Confidence 7999999999988887 578899999996666554444444433 44443 3489999998 444444444333
No 461
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.92 E-value=1.2e-08 Score=72.77 Aligned_cols=114 Identities=19% Similarity=0.179 Sum_probs=61.7
Q ss_pred ceeEEEEccCCCcHHHHHHHHHHHHHHHhhC-ceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG-CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g-~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
+..+.|+||+|+||||+++.+.......... .++..+........... ............+++..+..+.++-
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-----LIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-----hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999985432221101 12222221111111000 1122333445556666666666666
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHH-------HHHHhcCCCeEEEecC
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIA-------RELASNRQPFTLFATH 157 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il-------~~l~~~~~~~vii~tH 157 (185)
..|.++++||+ ....+......... .......+..+|.++|
T Consensus 77 ~~~~viiiDei---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 77 LKPDVLILDEI---TSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred cCCCEEEEECC---cccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 56799999999 44444333322110 1112224678888888
No 462
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.91 E-value=1.9e-09 Score=100.01 Aligned_cols=64 Identities=14% Similarity=-0.043 Sum_probs=46.7
Q ss_pred CCCeEEEEeCCCCCCC-cCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHH---------HhhccccceeeeeEEEE
Q psy5297 114 TENSLVIIDELGRGTS-TFDGFGMACSIARELASNRQPFTLFATHF-HEIA---------LLSRVIPTFRNVHESKY 179 (185)
Q Consensus 114 ~~p~llllDEP~~g~~-~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~---------~~~d~~~~l~~g~i~~~ 179 (185)
.+|+++++|||..+++ +.....+.+ .++.+++ .|.+++++||+ .++. +.|++.+++.++++...
T Consensus 651 ~~p~illlDE~~~~L~d~~~~~~i~~-~lk~~RK-~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~ 725 (818)
T PRK13830 651 GAPSLIILDEAWLMLGHPVFRDKIRE-WLKVLRK-ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREP 725 (818)
T ss_pred CCCcEEEEECchhhcCCHHHHHHHHH-HHHHHHH-cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccccc
Confidence 7999999999977763 333333333 3466655 68999999998 6654 57999999999987543
No 463
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.90 E-value=1.3e-09 Score=103.90 Aligned_cols=80 Identities=10% Similarity=-0.049 Sum_probs=61.5
Q ss_pred cccCcCccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhc
Q psy5297 92 QYRGISTFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSR 166 (185)
Q Consensus 92 ~~~~~~~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d 166 (185)
..+++..|||||++++++|.++ . .|++++||||++++|+.....+...+ ..+.. +..+|++||+......||
T Consensus 1068 ~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l-~~~~~--~~~~i~~t~~~~~~~~~d 1144 (1164)
T TIGR02169 1068 PVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLI-REKAG--EAQFIVVSLRSPMIEYAD 1144 (1164)
T ss_pred CCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHH-HHhcC--CCeEEEEECcHHHHHhcc
Confidence 4567789999999999999887 3 67999999997776666555554433 55543 577999999966778999
Q ss_pred cccceeee
Q psy5297 167 VIPTFRNV 174 (185)
Q Consensus 167 ~~~~l~~g 174 (185)
+++.+...
T Consensus 1145 ~~~~~~~~ 1152 (1164)
T TIGR02169 1145 RAIGVTMR 1152 (1164)
T ss_pred eeEeEEEe
Confidence 99877643
No 464
>PRK02224 chromosome segregation protein; Provisional
Probab=98.85 E-value=3.7e-09 Score=98.82 Aligned_cols=78 Identities=6% Similarity=-0.066 Sum_probs=57.3
Q ss_pred cCcCccHHHHHH------HHHHHHhC-CC-----C-eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCC-eEEEecChh
Q psy5297 94 RGISTFMMEMKE------TATVIKKC-TE-----N-SLVIIDELGRGTSTFDGFGMACSIARELASNRQP-FTLFATHFH 159 (185)
Q Consensus 94 ~~~~~lS~g~~q------~~~ia~~l-~~-----p-~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~-~vii~tH~~ 159 (185)
.++..||+|+++ |+++++++ .. | +++|+|||++++|+.....+... +..+.. .|. +||++||+.
T Consensus 777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~-l~~~~~-~~~~qviiish~~ 854 (880)
T PRK02224 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDL-VESMRR-LGVEQIVVVSHDD 854 (880)
T ss_pred cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHH-HHHHHh-cCCCeEEEEECCh
Confidence 457899999999 77787776 42 3 67999999666665554444443 356654 454 799999996
Q ss_pred HHHHhhccccceee
Q psy5297 160 EIALLSRVIPTFRN 173 (185)
Q Consensus 160 ~~~~~~d~~~~l~~ 173 (185)
.+...||+++.|..
T Consensus 855 ~~~~~ad~~~~~~~ 868 (880)
T PRK02224 855 ELVGAADDLVRVEK 868 (880)
T ss_pred HHHHhcCeeEEeec
Confidence 66678999999864
No 465
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.82 E-value=5.9e-09 Score=83.45 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=64.5
Q ss_pred ceeEEEEccCCCcHHHHHHHHHHHHHH-----H---------hhCceecCCCCC---cchhhHHHhhcCcccccccCcCc
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGVSVFL-----A---------QIGCFVPCDSAT---ISVVDQIFTRVGAADSQYRGIST 98 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~i~~~-----~---------~~g~~v~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~ 98 (185)
|.+..|+||.|+|||||.-.++.-.-. . .+. |+..+... ..++..+...++..+..++...
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vl-yi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~- 78 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVV-YLSAEDPREEIHRRLEAILQHLEPDDAGDRLFI- 78 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEE-EEECCCCHHHHHHHHHHHHhhcCCcCcccceEE-
Confidence 567899999999999999888432110 0 111 33333211 1234445544443322221111
Q ss_pred cHHHHHHHHH---------------HHH-hC-CCCeEEEEeCCCCCC---CcCChhHHHHHH--HHHHHhcCCCeEEEec
Q psy5297 99 FMMEMKETAT---------------VIK-KC-TENSLVIIDELGRGT---STFDGFGMACSI--ARELASNRQPFTLFAT 156 (185)
Q Consensus 99 lS~g~~q~~~---------------ia~-~l-~~p~llllDEP~~g~---~~~d~~~~~~~i--l~~l~~~~~~~vii~t 156 (185)
..|+.|++. +.. .. .+|+++++| |++.+ +..|.......+ +..++++.++++++++
T Consensus 79 -~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~ 156 (239)
T cd01125 79 -DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVH 156 (239)
T ss_pred -eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 123333322 222 22 799999999 75543 334544443322 3555554699999999
Q ss_pred Ch
Q psy5297 157 HF 158 (185)
Q Consensus 157 H~ 158 (185)
|.
T Consensus 157 H~ 158 (239)
T cd01125 157 HV 158 (239)
T ss_pred cc
Confidence 96
No 466
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.76 E-value=3.1e-08 Score=83.57 Aligned_cols=119 Identities=17% Similarity=0.111 Sum_probs=62.0
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCc-eecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC-FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK 112 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~-~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~ 112 (185)
.++.++.|.||+||||||+|+.+..-......+. +...++..+.. ......+. .........++ .-.+.++
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~-~~~~~~i~-q~evg~~~~~~------~~~l~~~ 191 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH-RNKRSLIN-QREVGLDTLSF------ANALRAA 191 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc-cCccceEE-ccccCCCCcCH------HHHHHHh
Confidence 4678999999999999999998843211111111 12222211110 00000000 00001111122 1235567
Q ss_pred C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcccc
Q psy5297 113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIP 169 (185)
Q Consensus 113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~ 169 (185)
+ .+|+++++||+ . |.......+ +. .. .|..++.+.|-.......+|+.
T Consensus 192 lr~~pd~i~vgEi---r---d~~~~~~~l-~a-a~-tGh~v~~T~Ha~~~~~~~~Rl~ 240 (343)
T TIGR01420 192 LREDPDVILIGEM---R---DLETVELAL-TA-AE-TGHLVFGTLHTNSAAQTIERII 240 (343)
T ss_pred hccCCCEEEEeCC---C---CHHHHHHHH-HH-HH-cCCcEEEEEcCCCHHHHHHHHH
Confidence 7 99999999999 4 544443323 43 33 6999999999644444444543
No 467
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.73 E-value=5.4e-09 Score=81.21 Aligned_cols=89 Identities=13% Similarity=0.090 Sum_probs=56.1
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCC-----------------------CCcchhhHHHhhcCccccccc
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS-----------------------ATISVVDQIFTRVGAADSQYR 94 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~-----------------------~~~~~~~~~l~~~~l~~~~~~ 94 (185)
+++|+||+|||||||.++|....-...+. +++.+. .......+.+..+...+..+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~-v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 79 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVV-IISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEI 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeE-EEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEec
Confidence 58999999999999999995432000111 222221 111123344555555556677
Q ss_pred CcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCC
Q psy5297 95 GISTFMMEMKETATVIKKCTENSLVIIDELGRGTS 129 (185)
Q Consensus 95 ~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~ 129 (185)
+..++|.+++++..+ .+..++++|+|+|+.+.+
T Consensus 80 p~~d~~~~~~~~~~~--~i~~~~~vI~eg~~~~~~ 112 (198)
T cd02023 80 PVYDFKTHSRLKETV--TVYPADVIILEGILALYD 112 (198)
T ss_pred cccccccCcccCCce--ecCCCCEEEEechhhccc
Confidence 788888888765444 237899999999966543
No 468
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.71 E-value=3.3e-09 Score=93.22 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=22.8
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
-+++|..+.|.||+|||||||...+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qf 41 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQF 41 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 4689999999999999999998876
No 469
>PRK00064 recF recombination protein F; Reviewed
Probab=98.71 E-value=2.9e-08 Score=84.25 Aligned_cols=76 Identities=14% Similarity=0.074 Sum_probs=56.1
Q ss_pred cCccHHHHHHHHHHHHhC----------CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHh
Q psy5297 96 ISTFMMEMKETATVIKKC----------TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALL 164 (185)
Q Consensus 96 ~~~lS~g~~q~~~ia~~l----------~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~ 164 (185)
...+|.||+|++.+|..+ .+|+++||||| ++.+|...... +++.+.+ .+..++++||+ ..+...
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~---~s~LD~~~~~~-l~~~l~~-~~~qv~it~~~~~~~~~~ 345 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDV---ASELDDGRRAA-LLERLKG-LGAQVFITTTDLEDLADL 345 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccc---hhhhCHHHHHH-HHHHHhc-cCCEEEEEcCChhhhhhh
Confidence 356899999999999764 58999999999 55566554444 3355543 35688999997 555555
Q ss_pred h--ccccceeeeeE
Q psy5297 165 S--RVIPTFRNVHE 176 (185)
Q Consensus 165 ~--d~~~~l~~g~i 176 (185)
+ ++++.|++|++
T Consensus 346 ~~~~~i~~v~~G~i 359 (361)
T PRK00064 346 LENAKIFHVEQGKI 359 (361)
T ss_pred hccCcEEEEeCCEE
Confidence 4 47888999987
No 470
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.71 E-value=4.7e-08 Score=83.73 Aligned_cols=145 Identities=15% Similarity=0.177 Sum_probs=93.0
Q ss_pred EeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhh---C-ceecCCC----------CCcch--hhHHHhhcCcc-cccc
Q psy5297 31 FKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQI---G-CFVPCDS----------ATISV--VDQIFTRVGAA-DSQY 93 (185)
Q Consensus 31 l~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~---g-~~v~~~~----------~~~~~--~~~~l~~~~l~-~~~~ 93 (185)
+-|++| +++|+|.+--||||||+.|-.=.+ .|+ | -||-..+ ....- +.-.+..+... +-.+
T Consensus 240 MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVY-nHipGDGRE~VVT~~~avkirAEDGR~V~~vDISpFI~~LP~g~dT~~ 317 (448)
T PF09818_consen 240 MGIPKG-VTLIVGGGYHGKSTLLEALERGVY-NHIPGDGREFVVTDPDAVKIRAEDGRSVEGVDISPFINNLPGGKDTTC 317 (448)
T ss_pred EeeCCc-EEEEECCCCccHHHHHHHHHhccc-CCCCCCCceEEEECCCceEEEecCCceEeCccchHHHhhCCCCCCCCc
Confidence 346788 999999999999999999922111 111 0 0111111 00000 11112222111 1112
Q ss_pred cCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH--------------HHHHHhcCCCeEEEecC-
Q psy5297 94 RGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI--------------ARELASNRQPFTLFATH- 157 (185)
Q Consensus 94 ~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i--------------l~~l~~~~~~~vii~tH- 157 (185)
-.-.+-||-+-|-..|..++ ...++||+||=++.|+.+-++...+.+ ++.+.++.|.+.|+++=
T Consensus 318 FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg 397 (448)
T PF09818_consen 318 FSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG 397 (448)
T ss_pred ccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc
Confidence 22345689999999999999 999999999999999998766654433 23443446876666665
Q ss_pred hhHHHHhhccccceeeeeEE
Q psy5297 158 FHEIALLSRVIPTFRNVHES 177 (185)
Q Consensus 158 ~~~~~~~~d~~~~l~~g~i~ 177 (185)
..+....||+++.|++.+..
T Consensus 398 sgdy~~vAD~Vi~Md~Y~~~ 417 (448)
T PF09818_consen 398 SGDYFDVADRVIMMDEYRPK 417 (448)
T ss_pred chhhHhhCCEEEEecCccch
Confidence 48889999999999998753
No 471
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.69 E-value=2.2e-08 Score=63.68 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=24.5
Q ss_pred EEEeeCC-ceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 29 VYFKSGE-VSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 29 isl~i~~-g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
-.+++.+ |+++.|+|||||||||+|..|-.+
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4444543 679999999999999999998543
No 472
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.69 E-value=2.2e-08 Score=77.26 Aligned_cols=117 Identities=12% Similarity=0.086 Sum_probs=60.9
Q ss_pred ceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHH
Q psy5297 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKET 106 (185)
Q Consensus 27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~ 106 (185)
.=+.+.+++|+.++|+||||||||||+++|.... ....+.....++..+..... ...++.. .......+....-.
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i-~~~~~~i~ied~~E~~~~~~--~~~~~~~--~~~~~~~~~~~~~~ 90 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFI-PPDERIITIEDTAELQLPHP--NWVRLVT--RPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEECCccccCCCCC--CEEEEEE--ecCCCCCCCccCHH
Confidence 3345667899999999999999999999984321 12223222233222211000 0011100 00000011111112
Q ss_pred HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCe-EEEecCh
Q psy5297 107 ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPF-TLFATHF 158 (185)
Q Consensus 107 ~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~-vii~tH~ 158 (185)
-.+..++ .+|+.++++|. - +.+. .. +++.. . .|.. ++.+-|-
T Consensus 91 ~~l~~~lR~~pd~i~igEi---r---~~ea-~~-~~~a~-~-tGh~g~~~T~Ha 134 (186)
T cd01130 91 DLLRSALRMRPDRIIVGEV---R---GGEA-LD-LLQAM-N-TGHPGGMTTIHA 134 (186)
T ss_pred HHHHHHhccCCCEEEEEcc---C---cHHH-HH-HHHHH-h-cCCCCceeeecC
Confidence 2344456 89999999999 3 3332 33 33544 3 5877 7888884
No 473
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.69 E-value=2.3e-07 Score=78.90 Aligned_cols=101 Identities=16% Similarity=0.191 Sum_probs=64.4
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHH----hhCceecCCCCCcchhhHH---HhhcCcccccccCc
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----QIGCFVPCDSATISVVDQI---FTRVGAADSQYRGI 96 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~----~~g~~v~~~~~~~~~~~~~---l~~~~l~~~~~~~~ 96 (185)
.++++.++.+++|++++++||||+||||++..|+.-.... .++ ++..+.......+.+ .+.+++.-..-+..
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~-lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~ 203 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVA-LLTTDSYRIGGHEQLRIFGKILGVPVHAVKDG 203 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEE-EEecccccccHHHHHHHHHHHcCCceEecCCc
Confidence 3667778888999999999999999999999996533221 344 666665544433333 34455433222333
Q ss_pred CccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChh
Q psy5297 97 STFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGF 134 (185)
Q Consensus 97 ~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~ 134 (185)
.++.. .+ ..+.+.+++|+|+| |.++.|..
T Consensus 204 ~~l~~------~l-~~l~~~DlVLIDTa--G~~~~d~~ 232 (374)
T PRK14722 204 GDLQL------AL-AELRNKHMVLIDTI--GMSQRDRT 232 (374)
T ss_pred ccHHH------HH-HHhcCCCEEEEcCC--CCCcccHH
Confidence 33422 12 22467899999999 56666644
No 474
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.69 E-value=1.2e-07 Score=82.99 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=40.6
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHH----hhCceecCCCCCcchhh
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----QIGCFVPCDSATISVVD 80 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~----~~g~~v~~~~~~~~~~~ 80 (185)
++++.++.+++|++++++||||+||||++..|....... .++ +++++.......+
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~-LI~~Dt~RigA~E 303 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVA-LLTTDSYRIGGHE 303 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEE-EEeCCccchhHHH
Confidence 456677777889999999999999999999996544322 345 7888775544433
No 475
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.69 E-value=7.7e-09 Score=89.76 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=30.7
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHH
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIR 54 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk 54 (185)
..+|++||+++++||+++|+||||||||||||
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 35899999999999999999999999999999
No 476
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=98.64 E-value=7.5e-08 Score=81.72 Aligned_cols=146 Identities=16% Similarity=0.079 Sum_probs=94.7
Q ss_pred EeeCCceeEEEEccCCCcHHHHHHHHHHHHHH------------HhhCceecCCC-CCcc--hhhHHHhhc-Cccccccc
Q psy5297 31 FKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL------------AQIGCFVPCDS-ATIS--VVDQIFTRV-GAADSQYR 94 (185)
Q Consensus 31 l~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~------------~~~g~~v~~~~-~~~~--~~~~~l~~~-~l~~~~~~ 94 (185)
+-|++| ++.|+|+|--|||||+..|-.=.+. ....+++-... ..++ -+...+..+ |..+..+-
T Consensus 238 mgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipGDGRE~vVTd~~lakaeae~gr~vsg~D~SlFi~~LPggkdTp~f 316 (554)
T COG3044 238 MGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPGDGRERVVTDVKLAKAEAEEGRCVSGLDLSLFINHLPGGKDTPDF 316 (554)
T ss_pred cCCCcc-eEEEecCCccchhHHHHHHHhcccccCCCCCceEEEehhhhhhhhcccceeeeccchHHHHHhCCCCCCCccc
Confidence 456788 9999999999999999999221110 01111222221 0000 111222222 23333333
Q ss_pred CcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH---------HHHHHhcCC--CeEEEecCh-hHH
Q psy5297 95 GISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI---------ARELASNRQ--PFTLFATHF-HEI 161 (185)
Q Consensus 95 ~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i---------l~~l~~~~~--~~vii~tH~-~~~ 161 (185)
--..-||-+.+-..|=+++ ...+.+|+||=++.++.+-...+...+ .....+..| .++|++|-- .++
T Consensus 317 vtgdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddl 396 (554)
T COG3044 317 VTGDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDL 396 (554)
T ss_pred ccCCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhccCceEEEEEeccchhh
Confidence 4457799999999999999 999999999999999988766554332 122222223 778888775 889
Q ss_pred HHhhccccceeeeeEE
Q psy5297 162 ALLSRVIPTFRNVHES 177 (185)
Q Consensus 162 ~~~~d~~~~l~~g~i~ 177 (185)
.+.+||+++|++.+-.
T Consensus 397 la~aDRaIvMeDhrpk 412 (554)
T COG3044 397 LAVADRAIVMEDHRPK 412 (554)
T ss_pred hhhcceEEEecccCcc
Confidence 9999999999998753
No 477
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.60 E-value=1.1e-07 Score=89.35 Aligned_cols=77 Identities=19% Similarity=0.142 Sum_probs=61.6
Q ss_pred ccCcCccHHHHHHHHHHHHh------C-CC--CeEEEEeCCCCCCCcCChhHHHHHH--HHHHHhcCCCeEEEecChhHH
Q psy5297 93 YRGISTFMMEMKETATVIKK------C-TE--NSLVIIDELGRGTSTFDGFGMACSI--ARELASNRQPFTLFATHFHEI 161 (185)
Q Consensus 93 ~~~~~~lS~g~~q~~~ia~~------l-~~--p~llllDEP~~g~~~~d~~~~~~~i--l~~l~~~~~~~vii~tH~~~~ 161 (185)
-+++++||||++-.++||-+ + .+ -++++|||| |..+|...+..++ +..+.. .+.+|+||||+.++
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEp---f~~LD~e~l~~l~~~l~~i~~-~~~qiiIISH~eel 885 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEP---FGTLDEERLEKLAEILEELLS-DGRQIIIISHVEEL 885 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCC---CCCCCHHHHHHHHHHHHHHHh-cCCeEEEEeChHHH
Confidence 47899999999998876654 4 45 699999999 6667766665543 567766 48999999999999
Q ss_pred HHhhccccceee
Q psy5297 162 ALLSRVIPTFRN 173 (185)
Q Consensus 162 ~~~~d~~~~l~~ 173 (185)
.+.+|.++.+..
T Consensus 886 ~e~~~~~i~V~k 897 (908)
T COG0419 886 KERADVRIRVKK 897 (908)
T ss_pred HHhCCeEEEEEe
Confidence 999999888764
No 478
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.58 E-value=2.9e-07 Score=80.36 Aligned_cols=138 Identities=15% Similarity=0.108 Sum_probs=75.0
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-hhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI 110 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia 110 (185)
-+.+|+++.|.|++|+|||||+..+..-.... .-..|+.-+.. ...+..-..++++....-....+.+.. .+.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-~~qi~~ra~rlg~~~~~l~~~~e~~~~-----~I~ 163 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-LQQIKMRAIRLGLPEPNLYVLSETNWE-----QIC 163 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-HHHHHHHHHHcCCChHHeEEcCCCCHH-----HHH
Confidence 47899999999999999999999884322211 11226554332 111222223444421100001111111 222
Q ss_pred HhC--CCCeEEEEeCCCCCCC------cCChhHHHHHH--HHHHHhcCCCeEEEecCh-hH--------HHHhhccccce
Q psy5297 111 KKC--TENSLVIIDELGRGTS------TFDGFGMACSI--ARELASNRQPFTLFATHF-HE--------IALLSRVIPTF 171 (185)
Q Consensus 111 ~~l--~~p~llllDEP~~g~~------~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~--------~~~~~d~~~~l 171 (185)
..+ .+|+++++|....=.. +-+.....+.+ +..++++.|.|+++++|. .+ +..++|.++.|
T Consensus 164 ~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~L 243 (454)
T TIGR00416 164 ANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYF 243 (454)
T ss_pred HHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEE
Confidence 333 6899999998743111 11122232221 344444479999999995 33 45678888887
Q ss_pred eeee
Q psy5297 172 RNVH 175 (185)
Q Consensus 172 ~~g~ 175 (185)
+.++
T Consensus 244 e~~~ 247 (454)
T TIGR00416 244 EGDR 247 (454)
T ss_pred eccC
Confidence 7543
No 479
>PRK13764 ATPase; Provisional
Probab=98.55 E-value=4.7e-07 Score=81.20 Aligned_cols=120 Identities=15% Similarity=0.076 Sum_probs=69.0
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCce--ecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCF--VPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK 111 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~--v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~ 111 (185)
.++.-+.+.||.||||||+++.+....- ..+.. ...++..+..... .... . .+.+.+..... .
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~--~~~riV~TiEDp~El~~~~~------i~q~-~----~~~~~~~~~~~--~ 319 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYA--DMGKIVKTMESPRDLQVPPE------ITQY-S----KLEGSMEETAD--I 319 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHh--hCCCEEEEECCCccccCCCc------ceEE-e----eccccHHHHHH--H
Confidence 4456689999999999999999864322 12211 1222222211110 0100 0 01111111111 1
Q ss_pred hC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecC---------------h-hHHHHhhccccceeee
Q psy5297 112 KC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATH---------------F-HEIALLSRVIPTFRNV 174 (185)
Q Consensus 112 ~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH---------------~-~~~~~~~d~~~~l~~g 174 (185)
+| .+|+++++||. -|.+.+.. +..++. .|..++-+-| + ..+...+|+++++++|
T Consensus 320 lLR~rPD~IivGEi------Rd~Et~~~--~~~l~~-ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G 390 (602)
T PRK13764 320 LLLVRPDYTIYDEM------RKTEDFKI--FADMRL-AGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDG 390 (602)
T ss_pred HHhhCCCEEEECCC------CCHHHHHH--HHHHHH-cCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCC
Confidence 25 89999999999 44343322 234443 4777888889 5 4556689999999999
Q ss_pred eEE
Q psy5297 175 HES 177 (185)
Q Consensus 175 ~i~ 177 (185)
++.
T Consensus 391 ~I~ 393 (602)
T PRK13764 391 EVS 393 (602)
T ss_pred EEE
Confidence 994
No 480
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.55 E-value=1.3e-07 Score=82.09 Aligned_cols=157 Identities=10% Similarity=0.046 Sum_probs=84.3
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCc--eecCCCCCcc-hhhHHHhhcCcccc-cccCcCc
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC--FVPCDSATIS-VVDQIFTRVGAADS-QYRGIST 98 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~--~v~~~~~~~~-~~~~~l~~~~l~~~-~~~~~~~ 98 (185)
..+++++ |.+.+|+.++|+|+||+|||||+++|.... ....+. .+-....... ..++.+..-++... .-...++
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~-~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d 228 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNT-EADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD 228 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCC-CCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence 4588999 999999999999999999999999984321 111110 1111111111 11122211111110 1111223
Q ss_pred cHHHHHHHHH-----HHHhC---CCCeEEEEeCCCC----------------CCCcCChhHHH--HHHHHHHHhcCCC--
Q psy5297 99 FMMEMKETAT-----VIKKC---TENSLVIIDELGR----------------GTSTFDGFGMA--CSIARELASNRQP-- 150 (185)
Q Consensus 99 lS~g~~q~~~-----ia~~l---~~p~llllDEP~~----------------g~~~~d~~~~~--~~il~~l~~~~~~-- 150 (185)
-|.++|.+.. +|..+ ...-++++|--|+ +..+.++.... ..++++... .+.
T Consensus 229 ~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~-~~~GS 307 (440)
T TIGR01026 229 QSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGA-SGKGS 307 (440)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhcc-CCCCe
Confidence 3445555533 22222 2344566664332 22334433222 223455554 355
Q ss_pred -----eEEEecChhHHHHhhccccceeeeeEEEEeccC
Q psy5297 151 -----FTLFATHFHEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 151 -----~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
||++.+||. ...++|++..+.+|+++...+.+
T Consensus 308 IT~i~tVl~~~~d~-~dpi~d~~~~i~dG~ivLsr~la 344 (440)
T TIGR01026 308 ITAFYTVLVEGDDM-NEPIADSVRGILDGHIVLSRALA 344 (440)
T ss_pred eeEEEEEEccCcCC-CcchhhhhccccceEEEEecchh
Confidence 777888874 35588999999999998876543
No 481
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.54 E-value=7.2e-07 Score=70.71 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=23.4
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
.+++|++++|.||+|+|||||...+.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHH
Confidence 57899999999999999999988763
No 482
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.52 E-value=5.4e-08 Score=75.12 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=76.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHHHhhCc-eecCCC-------CCcchhhHHHhhcCcccccccCcCccHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGVSVFLAQIGC-FVPCDS-------ATISVVDQIFTRVGAADSQYRGISTFMMEMKETATV 109 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~-~v~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~i 109 (185)
+++|+|.-||||||+.+.+..-. +. ++..+. ..-+.+.++.+.||- +..+. .|+.+|..|
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-----~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~-~i~~~------~g~idr~~L 68 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-----HFPVIDADKIAHQVVEKGSPAYEKIVDHFGA-QILNE------DGELDRKAL 68 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCeEEeCCHHHHHHHhcCChHHHHHHHHHCH-HHhCC------CCCCCHHHH
Confidence 48999999999999999884321 11 111211 112345566666762 11111 377889999
Q ss_pred HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hH--HHHhhccccceeee
Q psy5297 110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HE--IALLSRVIPTFRNV 174 (185)
Q Consensus 110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~--~~~~~d~~~~l~~g 174 (185)
+..+ .+|+.+..+| +.+.|.-...+.+.+ ....+ .+.+|++.+|. .+ +...||+++++..+
T Consensus 69 ~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i-~~~~~-~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 69 GERVFNDPEELKWLN--NLLHPLIREWMKKLL-AQFQS-KLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred HHHHhCCHHHHHHHH--HhhCHHHHHHHHHHH-HHhhc-CCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 9998 9999887776 345555444443333 33333 35789999996 43 67789999887653
No 483
>PRK04296 thymidine kinase; Provisional
Probab=98.52 E-value=1.5e-06 Score=67.35 Aligned_cols=124 Identities=14% Similarity=0.059 Sum_probs=68.0
Q ss_pred ceeEEEEccCCCcHHHHHHHHHHHHHH-HhhCceecCC--CCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCD--SATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK 112 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g~~v~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~ 112 (185)
|.++.++||.|+||||++.-+..-... .... +++.. ..... ...+.+++|+.-.. ..........+ .+ ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v-~i~k~~~d~~~~-~~~i~~~lg~~~~~-~~~~~~~~~~~-~~--~~- 74 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKV-LVFKPAIDDRYG-EGKVVSRIGLSREA-IPVSSDTDIFE-LI--EE- 74 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeE-EEEecccccccc-CCcEecCCCCcccc-eEeCChHHHHH-HH--Hh-
Confidence 789999999999999988666322211 1122 22211 11111 23345555542111 01111111111 11 11
Q ss_pred C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-----------hHHHHhhcccccee
Q psy5297 113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-----------HEIALLSRVIPTFR 172 (185)
Q Consensus 113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-----------~~~~~~~d~~~~l~ 172 (185)
. .+++++++||- ..++...+.+ +++.++. .|.+|+++.++ ..+..+||.+..|+
T Consensus 75 ~~~~~dvviIDEa----q~l~~~~v~~-l~~~l~~-~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~ 140 (190)
T PRK04296 75 EGEKIDCVLIDEA----QFLDKEQVVQ-LAEVLDD-LGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELK 140 (190)
T ss_pred hCCCCCEEEEEcc----ccCCHHHHHH-HHHHHHH-cCCeEEEEecCcccccCcCchHHHHHHhcCeEEEee
Confidence 3 57899999998 2244343444 3466665 69999999887 35667888887664
No 484
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.51 E-value=2.5e-07 Score=89.02 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=25.5
Q ss_pred EEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 29 VYFKSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 29 isl~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
++++.+++++++|+|++|+|||||++.+
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l 227 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARAL 227 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHH
Confidence 4567788999999999999999999999
No 485
>PRK09183 transposase/IS protein; Provisional
Probab=98.50 E-value=5e-07 Score=73.40 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=30.6
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 60 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~ 60 (185)
.|.+++| +++|+.++|+||+|+|||+|..+||...
T Consensus 92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 92 SLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred HHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4667788 8999999999999999999999997643
No 486
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.46 E-value=1.7e-06 Score=73.70 Aligned_cols=136 Identities=15% Similarity=0.123 Sum_probs=72.8
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-hhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI 110 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia 110 (185)
-+.+|+++.|.|++|+|||||+..+....... ....|+..+.. ...+.....++++....-......... .+.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg~~~~~l~l~~e~~le-----~I~ 151 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLGISTENLYLLAETNLE-----DIL 151 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcCCCcccEEEEccCcHH-----HHH
Confidence 36789999999999999999999884322221 12225544321 222222334555432100001111111 122
Q ss_pred HhC--CCCeEEEEeCCCCC----CC--cCChhHHHHHH--HHHHHhcCCCeEEEecCh-hH--------HHHhhccccce
Q psy5297 111 KKC--TENSLVIIDELGRG----TS--TFDGFGMACSI--ARELASNRQPFTLFATHF-HE--------IALLSRVIPTF 171 (185)
Q Consensus 111 ~~l--~~p~llllDEP~~g----~~--~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~--------~~~~~d~~~~l 171 (185)
..+ .+|+++++|+...= .+ +-....+.+.+ +..+.++.+.+++++.|- .+ +..++|.++.+
T Consensus 152 ~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~l 231 (372)
T cd01121 152 ASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYF 231 (372)
T ss_pred HHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEE
Confidence 222 68999999996221 11 11122222222 344444479999999994 32 45677777776
Q ss_pred ee
Q psy5297 172 RN 173 (185)
Q Consensus 172 ~~ 173 (185)
+.
T Consensus 232 e~ 233 (372)
T cd01121 232 EG 233 (372)
T ss_pred Ec
Confidence 53
No 487
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.44 E-value=3.7e-06 Score=72.64 Aligned_cols=93 Identities=18% Similarity=0.248 Sum_probs=54.8
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHHHHHHHH---hhCceecCCCCCcchhhHH---HhhcCcccccccCcCccHHHHHHH
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA---QIGCFVPCDSATISVVDQI---FTRVGAADSQYRGISTFMMEMKET 106 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~---~~g~~v~~~~~~~~~~~~~---l~~~~l~~~~~~~~~~lS~g~~q~ 106 (185)
+++|++++++||||+||||+++.|....+.. ..+.++..+.......+++ .+.+|+.-..-....++ +
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl------~ 261 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADL------Q 261 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHH------H
Confidence 4689999999999999999999995433221 1223666666554444432 33444432111111111 1
Q ss_pred HHHHHhCCCCeEEEEeCCCCCCCcCChh
Q psy5297 107 ATVIKKCTENSLVIIDELGRGTSTFDGF 134 (185)
Q Consensus 107 ~~ia~~l~~p~llllDEP~~g~~~~d~~ 134 (185)
..+ ..+.+.++++.|.+ |....+..
T Consensus 262 ~al-~~l~~~d~VLIDTa--Grsqrd~~ 286 (420)
T PRK14721 262 LML-HELRGKHMVLIDTV--GMSQRDQM 286 (420)
T ss_pred HHH-HHhcCCCEEEecCC--CCCcchHH
Confidence 122 22478899999975 77777644
No 488
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.43 E-value=3.3e-06 Score=68.49 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=31.3
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
-..|+++.-.+.+|++++|.||.|+|||||+..+..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346888877899999999999999999999998843
No 489
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.41 E-value=1.3e-06 Score=69.10 Aligned_cols=138 Identities=14% Similarity=0.039 Sum_probs=70.1
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHHHHHH-HhhCceecCCCCCcchhhHHHhhcCcc--ccc-------ccCcCccHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDSATISVVDQIFTRVGAA--DSQ-------YRGISTFMM 101 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g~~v~~~~~~~~~~~~~l~~~~l~--~~~-------~~~~~~lS~ 101 (185)
.+++|+++.|.|+.|+|||+|.-.+..-... ...+.|+.-+.. ...+.+.+..++.+ +.. +..+..+..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 90 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER-EERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKT 90 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHh
Confidence 4678999999999999999997766321111 222225444332 11122222333321 111 111111211
Q ss_pred HHHHHHH-HHHhC--CCCeEEEEeCCCCCCCc--CChhHHHH---HHHHHHHhcCCCeEEEecChh---------H-HHH
Q psy5297 102 EMKETAT-VIKKC--TENSLVIIDELGRGTST--FDGFGMAC---SIARELASNRQPFTLFATHFH---------E-IAL 163 (185)
Q Consensus 102 g~~q~~~-ia~~l--~~p~llllDEP~~g~~~--~d~~~~~~---~il~~l~~~~~~~vii~tH~~---------~-~~~ 163 (185)
-..+... +...+ ..++++++| +.+.+.+ .+.....+ .+++.+++ .+.|+++++|.. . +..
T Consensus 91 ~~~~l~~~~~~~i~~~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~-~~~tvll~s~~~~~~~~~~~~~~~~~ 168 (224)
T TIGR03880 91 SLNRIKNELPILIKELGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRE-TGVTTILTSEADKTNVFASKYGLIEY 168 (224)
T ss_pred hHHHHHHHHHHHHHHhCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHh-CCCEEEEEEcccCCCCCccCCCceEE
Confidence 1111111 11222 578899999 5333311 12221222 23466665 699999999941 2 456
Q ss_pred hhcccccee
Q psy5297 164 LSRVIPTFR 172 (185)
Q Consensus 164 ~~d~~~~l~ 172 (185)
+||.++.++
T Consensus 169 l~D~vI~L~ 177 (224)
T TIGR03880 169 LADGVIILK 177 (224)
T ss_pred EEeEEEEEe
Confidence 788888875
No 490
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.40 E-value=3.4e-06 Score=78.94 Aligned_cols=53 Identities=15% Similarity=0.054 Sum_probs=36.3
Q ss_pred HHHhC-CCCeEEEEeCCCCCCC-cCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHH
Q psy5297 109 VIKKC-TENSLVIIDELGRGTS-TFDGFGMACSIARELASNRQPFTLFATHF-HEIAL 163 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~-~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~ 163 (185)
+.+++ .+|+++++|||..+++ +.....+.. .++.+++ .|.+++++||+ .++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~-~lk~~RK-~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIRE-WLKVLRK-ANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHH-HHHHHHh-cCCEEEEEeCCHHHHhh
Confidence 45567 8999999999977763 222222333 3466665 68899999998 66654
No 491
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.40 E-value=1.7e-06 Score=62.08 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=22.0
Q ss_pred CceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
.+..+.|+||.|+||||+++.+..-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999999653
No 492
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.40 E-value=6.9e-06 Score=67.14 Aligned_cols=108 Identities=20% Similarity=0.263 Sum_probs=60.8
Q ss_pred eeeceEEEeeCC-------ceeEEEEccCCCcHHHHHHHHHHHHHH-H-hhCceecCCCCCcchhhHHHh---hcCcccc
Q psy5297 24 YIPNDVYFKSGE-------VSFNLVTGPNMGGKSTYIRSIGVSVFL-A-QIGCFVPCDSATISVVDQIFT---RVGAADS 91 (185)
Q Consensus 24 ~il~~isl~i~~-------g~~~~l~G~NGsGKSTLlk~iG~i~~~-~-~~g~~v~~~~~~~~~~~~~l~---~~~l~~~ 91 (185)
.+++++++.++. |++++++||||+||||+++.|...... . .++ ++..+......+.++.. ..++.-.
T Consensus 56 ~v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~-~i~~D~~ri~~~~ql~~~~~~~~~~~~ 134 (270)
T PRK06731 56 YILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG-FITTDHSRIGTVQQLQDYVKTIGFEVI 134 (270)
T ss_pred HHhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEE-EEecCCCCHHHHHHHHHHhhhcCceEE
Confidence 468888888864 489999999999999999999654322 1 233 66666544444444332 2332211
Q ss_pred cccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297 92 QYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMAC 138 (185)
Q Consensus 92 ~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~ 138 (185)
....+..+ .+.+.-+....+.+++|+|-|.+ .+.+...+.+
T Consensus 135 ~~~~~~~l----~~~l~~l~~~~~~D~ViIDt~Gr--~~~~~~~l~e 175 (270)
T PRK06731 135 AVRDEAAM----TRALTYFKEEARVDYILIDTAGK--NYRASETVEE 175 (270)
T ss_pred ecCCHHHH----HHHHHHHHhcCCCCEEEEECCCC--CcCCHHHHHH
Confidence 11111111 11111111124689999999944 4455444444
No 493
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.38 E-value=2.8e-06 Score=66.83 Aligned_cols=141 Identities=14% Similarity=0.083 Sum_probs=72.2
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHHHHHH-HhhCceecCCCCCcchhhHHHhhcC---cccccccCcCccHHHHHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDSATISVVDQIFTRVG---AADSQYRGISTFMMEMKETA 107 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g~~v~~~~~~~~~~~~~l~~~~---l~~~~~~~~~~lS~g~~q~~ 107 (185)
-+++|+++.|.|++|+|||||.-.+..-... ..-..|+..+......+.++..... .....-..+.++. .+...+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 93 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFN-EQGRAI 93 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHH-HHHHHH
Confidence 4688999999999999999998887332211 1122255443322233333332210 0111111122332 222222
Q ss_pred H-HHHhC-CCCeEEEEeCCCCCCCc-CCh--------hHHHHHH--HHHHHhcCCCeEEEecCh-h-------------H
Q psy5297 108 T-VIKKC-TENSLVIIDELGRGTST-FDG--------FGMACSI--ARELASNRQPFTLFATHF-H-------------E 160 (185)
Q Consensus 108 ~-ia~~l-~~p~llllDEP~~g~~~-~d~--------~~~~~~i--l~~l~~~~~~~vii~tH~-~-------------~ 160 (185)
. +...+ .+++++++|-..+=... .+. ..+.+.+ +..++++.++++|+++|- . .
T Consensus 94 ~~~~~~~~~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~~ 173 (218)
T cd01394 94 QETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGHT 173 (218)
T ss_pred HHHHHHHhcCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCcc
Confidence 2 33334 56999999988332110 010 1222222 345555579999999994 2 2
Q ss_pred HHHhhccccceee
Q psy5297 161 IALLSRVIPTFRN 173 (185)
Q Consensus 161 ~~~~~d~~~~l~~ 173 (185)
+..++|.++.|+.
T Consensus 174 ~~~~~d~~i~l~~ 186 (218)
T cd01394 174 LEHWSKVILRLEK 186 (218)
T ss_pred hhcceeEEEEEEE
Confidence 3445666666664
No 494
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.36 E-value=2.5e-06 Score=72.42 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=60.8
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHHHHHH-HhhC--ceecCCCCCcchhhHHHhhcCc--ccccccCcCccHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIG--CFVPCDSATISVVDQIFTRVGA--ADSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g--~~v~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~lS~g~~q~~~ 108 (185)
.++..++|+|||||||||+|+++-..... ...+ .+...++..+. .+.+-..... .....+...+|..+.+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~-~~~~~~~~~~v~Q~~v~~~~~~~~~~l~---- 206 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFV-YDEIETISASVCQSEIPRHLNNFAAGVR---- 206 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEe-ccccccccceeeeeeccccccCHHHHHH----
Confidence 47899999999999999999998432211 0111 12222332221 1111000000 0001112234444443
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhH
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHE 160 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~ 160 (185)
.++ .+|+++++.|. -|.+.....+ +.. . .|..++-+-|-..
T Consensus 207 --~aLR~~Pd~i~vGEi------Rd~et~~~al-~aa-~-tGh~v~tTlHa~~ 248 (358)
T TIGR02524 207 --NALRRKPHAILVGEA------RDAETISAAL-EAA-L-TGHPVYTTLHSSG 248 (358)
T ss_pred --HHhccCCCEEeeeee------CCHHHHHHHH-HHH-H-cCCcEEEeeccCC
Confidence 366 89999999998 6655554443 433 3 5888888888433
No 495
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.36 E-value=4.8e-06 Score=77.52 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=32.2
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHH
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIAL 163 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~ 163 (185)
.+|.++++|||...++..........+++.+++ .|..++++||+ .++..
T Consensus 641 g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 641 GTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSVEDASK 690 (800)
T ss_pred CCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHh
Confidence 789999999996666521112222223466655 68899999998 55443
No 496
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.35 E-value=5e-07 Score=69.28 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=25.9
Q ss_pred ceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH
Q psy5297 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 60 (185)
Q Consensus 27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~ 60 (185)
.++++++.+ .+++|+||||+||||++.+|..+.
T Consensus 11 ~~~~i~f~~-g~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 11 KDLEIDFSP-GLNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEEEEE--S-EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cceEEEcCC-CcEEEECCCCCCHHHHHHHHHHHH
Confidence 667777766 499999999999999999995443
No 497
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.34 E-value=4.2e-06 Score=73.01 Aligned_cols=135 Identities=16% Similarity=0.141 Sum_probs=73.4
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHHHHHH-HhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI 110 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia 110 (185)
.+.+|+++.|.|+.|+|||||+..+..-... .....|+..+.. ...+....++++.+...-......+. . .+.
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees-~~qi~~ra~rlg~~~~~l~~~~e~~l--~---~i~ 149 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES-ASQIKLRAERLGLPSDNLYLLAETNL--E---AIL 149 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc-HHHHHHHHHHcCCChhcEEEeCCCCH--H---HHH
Confidence 4678999999999999999999998442221 112236554332 22222224445542110000011111 1 222
Q ss_pred HhC--CCCeEEEEeCCCCCCC------cCChhHHHHHH--HHHHHhcCCCeEEEecCh-hH--------HHHhhccccce
Q psy5297 111 KKC--TENSLVIIDELGRGTS------TFDGFGMACSI--ARELASNRQPFTLFATHF-HE--------IALLSRVIPTF 171 (185)
Q Consensus 111 ~~l--~~p~llllDEP~~g~~------~~d~~~~~~~i--l~~l~~~~~~~vii~tH~-~~--------~~~~~d~~~~l 171 (185)
..+ .+|+++++|+..+-.. +-+...+.+.+ +..+.++.+.++++++|. .+ +..++|.++.+
T Consensus 150 ~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~~~ag~~~lehlvD~Vi~l 229 (446)
T PRK11823 150 ATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEGAIAGPRVLEHMVDTVLYF 229 (446)
T ss_pred HHHHhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCCCcCCcchhhhhCeEEEEE
Confidence 233 6899999999843221 11122222221 244444479999999994 22 56677888777
Q ss_pred e
Q psy5297 172 R 172 (185)
Q Consensus 172 ~ 172 (185)
+
T Consensus 230 e 230 (446)
T PRK11823 230 E 230 (446)
T ss_pred E
Confidence 5
No 498
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.31 E-value=6.2e-07 Score=70.25 Aligned_cols=40 Identities=20% Similarity=0.099 Sum_probs=28.8
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCC
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS 73 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~ 73 (185)
-++|++++|.||||||||||++.|....-...++ +++++.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~-~i~~D~ 42 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIV-IISQDN 42 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCe-Eecccc
Confidence 3689999999999999999999994322112233 555554
No 499
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.27 E-value=1.3e-06 Score=74.33 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=43.9
Q ss_pred ccHHHHHHHHHHHHhC-C---------CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 98 TFMMEMKETATVIKKC-T---------ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 98 ~lS~g~~q~~~ia~~l-~---------~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
.+|.||++++.+|..+ . +|+++||||| ++.+|...... +++.+.+ .|.+++++||+
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~---~seLD~~~r~~-l~~~l~~-~~~qv~it~~~ 340 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDV---ASELDDQRRRL-LAELLQS-LGVQVFVTAIS 340 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCc---hhccCHHHHHH-HHHHHhh-cCCEEEEEecC
Confidence 4799999999999887 6 8999999999 55566554444 4466654 36799999997
No 500
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.26 E-value=3.5e-06 Score=72.10 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=29.6
Q ss_pred eEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
|+.+.+.+|+.++|+||.|+|||||++.|..
T Consensus 160 d~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~ 190 (415)
T TIGR00767 160 DLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQ 190 (415)
T ss_pred eeEEEeCCCCEEEEECCCCCChhHHHHHHHH
Confidence 9999999999999999999999999999854
Done!