Query psy5297
Match_columns 185
No_of_seqs 220 out of 2145
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 22:57:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 100.0 2.4E-44 8.3E-49 292.7 12.6 178 1-184 3-230 (275)
2 3tui_C Methionine import ATP-b 100.0 6.5E-44 2.2E-48 299.6 15.1 179 3-184 22-250 (366)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 2.2E-44 7.6E-49 302.0 10.3 173 5-184 4-225 (359)
4 1b0u_A Histidine permease; ABC 100.0 9.7E-44 3.3E-48 287.4 12.5 176 1-184 2-239 (262)
5 3tif_A Uncharacterized ABC tra 100.0 6.8E-44 2.3E-48 284.1 11.1 177 6-185 2-232 (235)
6 4g1u_C Hemin import ATP-bindin 100.0 2.8E-43 9.6E-48 285.3 13.9 174 4-184 10-234 (266)
7 3rlf_A Maltose/maltodextrin im 100.0 4.2E-44 1.4E-48 302.3 8.5 173 5-184 3-220 (381)
8 1ji0_A ABC transporter; ATP bi 100.0 7.5E-43 2.6E-47 278.8 14.2 176 1-184 2-225 (240)
9 2olj_A Amino acid ABC transpor 100.0 1.3E-42 4.5E-47 280.9 15.6 172 5-184 24-245 (263)
10 2pcj_A ABC transporter, lipopr 100.0 3.6E-42 1.2E-46 272.3 17.7 169 5-181 4-222 (224)
11 1vpl_A ABC transporter, ATP-bi 100.0 1.3E-42 4.4E-47 280.0 13.8 172 5-184 15-232 (256)
12 2yyz_A Sugar ABC transporter, 100.0 4.2E-43 1.4E-47 294.7 9.5 173 5-184 3-220 (359)
13 2it1_A 362AA long hypothetical 100.0 5.2E-43 1.8E-47 294.4 7.9 173 5-184 3-220 (362)
14 1z47_A CYSA, putative ABC-tran 100.0 4.6E-43 1.6E-47 293.9 7.5 175 4-184 13-232 (355)
15 1g6h_A High-affinity branched- 100.0 7E-42 2.4E-46 275.7 13.9 172 5-184 7-239 (257)
16 3d31_A Sulfate/molybdate ABC t 100.0 1.3E-42 4.4E-47 290.7 9.8 171 6-184 2-214 (348)
17 2nq2_C Hypothetical ABC transp 100.0 1E-42 3.6E-47 280.1 8.7 172 5-183 4-213 (253)
18 1oxx_K GLCV, glucose, ABC tran 100.0 8.9E-43 3.1E-47 292.3 7.9 173 5-184 3-227 (353)
19 1v43_A Sugar-binding transport 100.0 8E-43 2.7E-47 294.2 7.2 172 6-184 12-228 (372)
20 1g29_1 MALK, maltose transport 100.0 1.5E-42 5E-47 292.7 8.6 173 5-184 3-226 (372)
21 2onk_A Molybdate/tungstate ABC 100.0 1.7E-42 5.8E-47 276.9 6.2 169 6-184 2-213 (240)
22 2ihy_A ABC transporter, ATP-bi 100.0 1.7E-41 5.7E-46 276.5 9.6 174 3-184 19-249 (279)
23 2yz2_A Putative ABC transporte 100.0 1.1E-40 3.9E-45 269.9 13.2 173 6-184 3-224 (266)
24 2ixe_A Antigen peptide transpo 100.0 1.9E-40 6.6E-45 269.3 12.9 175 5-184 16-242 (271)
25 2qi9_C Vitamin B12 import ATP- 100.0 2.1E-40 7.2E-45 266.0 12.1 158 24-184 14-219 (249)
26 2zu0_C Probable ATP-dependent 100.0 4.2E-40 1.4E-44 266.8 13.0 174 3-184 18-251 (267)
27 2d2e_A SUFC protein; ABC-ATPas 100.0 4.7E-40 1.6E-44 264.1 13.2 171 5-183 3-229 (250)
28 2ff7_A Alpha-hemolysin translo 100.0 4.4E-40 1.5E-44 263.9 12.4 172 6-184 8-229 (247)
29 1mv5_A LMRA, multidrug resista 100.0 1.8E-40 6.3E-45 265.4 8.9 170 6-183 2-222 (243)
30 2pze_A Cystic fibrosis transme 100.0 3.5E-41 1.2E-45 267.4 4.3 172 5-184 6-215 (229)
31 3nh6_A ATP-binding cassette SU 100.0 1.5E-39 5.2E-44 267.9 12.0 172 5-184 53-274 (306)
32 2cbz_A Multidrug resistance-as 100.0 9.6E-41 3.3E-45 266.2 3.4 174 5-184 3-214 (237)
33 1sgw_A Putative ABC transporte 100.0 2E-39 6.8E-44 255.0 8.1 161 5-176 10-210 (214)
34 2ghi_A Transport protein; mult 100.0 7.9E-39 2.7E-43 258.3 11.0 173 5-184 17-239 (260)
35 3gd7_A Fusion complex of cysti 100.0 2.1E-39 7.1E-44 274.8 7.4 173 5-184 19-239 (390)
36 2pjz_A Hypothetical protein ST 100.0 1.6E-38 5.3E-43 257.0 8.6 172 6-184 2-212 (263)
37 2bbs_A Cystic fibrosis transme 100.0 2.7E-39 9.1E-44 264.8 3.6 159 23-184 51-244 (290)
38 3thx_A DNA mismatch repair pro 100.0 1.2E-36 4.1E-41 280.6 13.3 182 3-184 629-810 (934)
39 3qf4_A ABC transporter, ATP-bi 100.0 1.7E-36 5.8E-41 269.1 12.0 172 6-184 342-563 (587)
40 3b5x_A Lipid A export ATP-bind 100.0 2.1E-36 7.2E-41 268.2 12.4 158 23-184 356-564 (582)
41 3qf4_B Uncharacterized ABC tra 100.0 1.4E-36 4.7E-41 270.1 11.2 172 5-184 354-575 (598)
42 3b60_A Lipid A export ATP-bind 100.0 2E-36 6.9E-41 268.3 11.3 172 6-184 342-564 (582)
43 2yl4_A ATP-binding cassette SU 100.0 6.8E-36 2.3E-40 265.5 13.8 173 6-185 342-568 (595)
44 4a82_A Cystic fibrosis transme 100.0 1.6E-36 5.4E-41 268.8 9.6 173 5-184 339-561 (578)
45 1yqt_A RNAse L inhibitor; ATP- 100.0 1E-36 3.4E-41 268.1 7.8 159 24-184 300-490 (538)
46 3bk7_A ABC transporter ATP-bin 100.0 2E-36 6.7E-41 269.2 8.5 159 24-184 370-560 (607)
47 3ozx_A RNAse L inhibitor; ATP 100.0 1.2E-35 4.2E-40 261.0 8.2 150 24-174 282-462 (538)
48 3thx_B DNA mismatch repair pro 100.0 6.3E-35 2.2E-39 268.6 12.3 177 3-179 638-817 (918)
49 3j16_B RLI1P; ribosome recycli 100.0 1.9E-35 6.4E-40 262.8 8.1 160 23-184 360-556 (608)
50 3ux8_A Excinuclease ABC, A sub 100.0 2.6E-34 8.9E-39 258.4 9.8 100 83-184 186-295 (670)
51 1wb9_A DNA mismatch repair pro 100.0 1.3E-33 4.3E-38 257.5 14.0 179 3-182 575-753 (800)
52 2o8b_B DNA mismatch repair pro 100.0 1.2E-33 4.2E-38 263.0 14.1 174 3-178 748-931 (1022)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 2.2E-33 7.5E-38 246.8 10.5 148 24-175 36-235 (538)
54 4f4c_A Multidrug resistance pr 100.0 3.6E-33 1.2E-37 266.0 12.6 174 5-184 415-638 (1321)
55 4f4c_A Multidrug resistance pr 100.0 1.2E-33 4.2E-38 269.2 7.4 173 5-184 1076-1301(1321)
56 3bk7_A ABC transporter ATP-bin 100.0 5.1E-33 1.7E-37 247.3 10.5 147 24-174 106-304 (607)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.2E-32 4.2E-37 247.5 12.0 101 82-184 526-637 (670)
58 3g5u_A MCG1178, multidrug resi 100.0 4E-33 1.4E-37 265.1 7.9 174 5-184 1030-1255(1284)
59 3g5u_A MCG1178, multidrug resi 100.0 9.7E-33 3.3E-37 262.5 10.4 174 5-184 387-610 (1284)
60 2iw3_A Elongation factor 3A; a 100.0 9E-33 3.1E-37 254.8 9.6 156 21-182 446-630 (986)
61 2iw3_A Elongation factor 3A; a 100.0 2.7E-33 9.2E-38 258.3 3.8 98 79-181 880-981 (986)
62 3j16_B RLI1P; ribosome recycli 100.0 4.2E-31 1.4E-35 234.9 13.0 150 23-175 91-298 (608)
63 3ozx_A RNAse L inhibitor; ATP 100.0 7.7E-31 2.6E-35 230.5 10.5 149 23-175 13-214 (538)
64 2r6f_A Excinuclease ABC subuni 100.0 3.9E-30 1.3E-34 236.1 9.8 102 81-184 827-939 (972)
65 3pih_A Uvrabc system protein A 100.0 1.6E-29 5.5E-34 232.6 13.4 102 81-184 787-899 (916)
66 2ygr_A Uvrabc system protein A 100.0 1.3E-29 4.3E-34 233.4 12.4 102 81-184 845-957 (993)
67 2vf7_A UVRA2, excinuclease ABC 100.0 1E-29 3.5E-34 232.1 9.4 102 81-184 712-824 (842)
68 1ewq_A DNA mismatch repair pro 100.0 5.6E-29 1.9E-33 225.9 14.1 169 4-183 549-720 (765)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 4.1E-27 1.4E-31 198.1 12.9 84 93-178 274-364 (365)
70 4aby_A DNA repair protein RECN 99.9 1.9E-27 6.5E-32 202.0 10.4 80 99-181 296-382 (415)
71 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.2E-28 4.2E-33 212.9 0.5 149 25-183 127-334 (460)
72 4gp7_A Metallophosphoesterase; 99.9 1.7E-27 5.9E-32 180.3 6.7 132 28-163 1-164 (171)
73 1ye8_A Protein THEP1, hypothet 99.9 9.2E-25 3.1E-29 166.8 9.4 127 38-177 2-158 (178)
74 3b85_A Phosphate starvation-in 99.9 7.9E-26 2.7E-30 176.7 -2.5 125 22-160 12-159 (208)
75 1e69_A Chromosome segregation 99.9 3.7E-23 1.3E-27 171.0 10.3 83 92-177 213-302 (322)
76 3qkt_A DNA double-strand break 99.9 1.9E-22 6.6E-27 167.8 11.5 80 92-173 242-328 (339)
77 1znw_A Guanylate kinase, GMP k 99.9 9.3E-25 3.2E-29 169.7 -5.2 149 21-172 7-202 (207)
78 1tq4_A IIGP1, interferon-induc 99.9 8.5E-25 2.9E-29 186.4 -6.3 148 23-174 36-254 (413)
79 2v9p_A Replication protein E1; 99.8 4.7E-24 1.6E-28 175.3 -7.2 133 24-184 114-263 (305)
80 1tf7_A KAIC; homohexamer, hexa 99.8 4.8E-21 1.6E-25 167.8 6.6 141 31-175 276-444 (525)
81 1cr0_A DNA primase/helicase; R 99.8 1.2E-20 4E-25 153.7 7.0 150 23-176 22-237 (296)
82 1z6g_A Guanylate kinase; struc 99.8 3.5E-22 1.2E-26 156.7 -2.5 141 24-170 11-206 (218)
83 2pt7_A CAG-ALFA; ATPase, prote 99.8 2.7E-22 9.2E-27 166.6 -4.6 130 25-175 160-291 (330)
84 3b9q_A Chloroplast SRP recepto 99.8 2.4E-20 8.4E-25 153.1 7.0 138 27-176 91-284 (302)
85 2ehv_A Hypothetical protein PH 99.8 6.2E-20 2.1E-24 144.7 7.5 140 32-173 26-207 (251)
86 1tf7_A KAIC; homohexamer, hexa 99.8 6.6E-21 2.3E-25 166.9 0.2 146 22-174 24-210 (525)
87 2o5v_A DNA replication and rep 99.8 3.9E-19 1.3E-23 149.1 10.3 85 93-185 259-354 (359)
88 2obl_A ESCN; ATPase, hydrolase 99.8 2.3E-21 7.7E-26 162.1 -4.3 150 23-184 59-252 (347)
89 2jeo_A Uridine-cytidine kinase 99.8 4.8E-20 1.6E-24 146.5 3.4 130 21-164 10-171 (245)
90 2og2_A Putative signal recogni 99.8 2.7E-19 9.4E-24 150.0 7.6 138 27-176 148-341 (359)
91 3aez_A Pantothenate kinase; tr 99.8 5.9E-21 2E-25 157.5 -2.7 129 33-173 87-244 (312)
92 3pih_A Uvrabc system protein A 99.8 3.4E-19 1.2E-23 164.1 8.2 100 83-184 448-557 (916)
93 2r6f_A Excinuclease ABC subuni 99.8 8.2E-19 2.8E-23 161.4 10.6 101 83-185 488-598 (972)
94 2w0m_A SSO2452; RECA, SSPF, un 99.8 1.2E-18 4E-23 135.6 10.0 149 24-174 10-192 (235)
95 2eyu_A Twitching motility prot 99.8 4.5E-19 1.5E-23 142.8 5.6 121 24-172 15-146 (261)
96 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 8.6E-19 3E-23 129.9 6.3 80 91-172 50-136 (148)
97 2vf7_A UVRA2, excinuclease ABC 99.8 2.4E-18 8.3E-23 157.4 10.4 100 83-184 363-472 (842)
98 2dpy_A FLII, flagellum-specifi 99.8 4.5E-20 1.5E-24 158.5 -1.0 148 23-183 145-340 (438)
99 2ygr_A Uvrabc system protein A 99.7 1.1E-18 3.9E-23 160.9 6.5 100 83-184 505-614 (993)
100 4a74_A DNA repair and recombin 99.7 2.1E-18 7.1E-23 134.4 5.4 143 32-175 21-201 (231)
101 1nlf_A Regulatory protein REPA 99.7 1.1E-17 3.7E-22 135.2 7.8 129 23-158 21-180 (279)
102 3sop_A Neuronal-specific septi 99.7 2.2E-19 7.7E-24 145.2 -2.4 110 38-157 4-148 (270)
103 2i3b_A HCR-ntpase, human cance 99.7 1.8E-18 6.3E-23 133.0 1.0 133 36-179 1-168 (189)
104 2cvh_A DNA repair and recombin 99.7 8.6E-17 2.9E-21 124.4 9.3 148 25-174 8-185 (220)
105 3jvv_A Twitching mobility prot 99.7 1.2E-16 4E-21 133.9 8.6 124 32-173 119-245 (356)
106 3asz_A Uridine kinase; cytidin 99.7 1.1E-19 3.9E-24 140.6 -10.0 123 33-158 3-160 (211)
107 1lw7_A Transcriptional regulat 99.6 4.7E-18 1.6E-22 142.5 -3.8 148 25-173 157-343 (365)
108 3ec2_A DNA replication protein 99.6 1.2E-16 4.2E-21 120.7 1.5 107 30-158 32-142 (180)
109 2ewv_A Twitching motility prot 99.6 6.6E-15 2.3E-19 123.9 9.2 126 25-171 127-256 (372)
110 4ad8_A DNA repair protein RECN 99.5 2.7E-15 9.1E-20 131.1 5.5 78 94-174 392-473 (517)
111 1n0w_A DNA repair protein RAD5 99.5 5.7E-15 2E-19 115.7 6.7 143 32-174 20-209 (243)
112 3kta_B Chromosome segregation 99.5 5E-15 1.7E-19 112.3 5.5 80 90-172 56-140 (173)
113 1rj9_A FTSY, signal recognitio 99.5 9.8E-15 3.4E-19 119.8 6.6 116 35-159 101-258 (304)
114 1pzn_A RAD51, DNA repair and r 99.5 9.2E-15 3.2E-19 122.1 5.5 138 25-162 119-290 (349)
115 2qnr_A Septin-2, protein NEDD5 99.5 1.1E-15 3.9E-20 125.1 -1.4 120 22-158 10-166 (301)
116 1pui_A ENGB, probable GTP-bind 99.4 1.9E-14 6.4E-19 110.4 2.6 128 5-140 3-193 (210)
117 2bdt_A BH3686; alpha-beta prot 99.4 3.2E-16 1.1E-20 119.2 -9.8 140 36-184 2-181 (189)
118 2kjq_A DNAA-related protein; s 99.4 4.2E-13 1.4E-17 99.1 6.8 101 25-168 30-139 (149)
119 1udx_A The GTP-binding protein 99.4 5.6E-14 1.9E-18 119.8 1.3 133 26-168 147-319 (416)
120 3auy_A DNA double-strand break 99.4 2.5E-13 8.5E-18 114.0 4.7 77 94-173 276-360 (371)
121 3szr_A Interferon-induced GTP- 99.4 2.7E-14 9.3E-19 127.1 -1.3 45 114-158 145-195 (608)
122 2qag_C Septin-7; cell cycle, c 99.4 1.2E-14 4E-19 124.1 -4.5 129 6-157 12-175 (418)
123 2gza_A Type IV secretion syste 99.3 2.2E-14 7.4E-19 120.3 -3.4 137 26-174 165-302 (361)
124 2qag_B Septin-6, protein NEDD5 99.3 3.1E-13 1.1E-17 115.4 3.4 127 23-158 28-218 (427)
125 3lda_A DNA repair protein RAD5 99.3 1.9E-12 6.4E-17 109.9 7.9 144 32-175 174-364 (400)
126 1w1w_A Structural maintenance 99.3 8.7E-13 3E-17 112.6 5.9 78 94-173 329-411 (430)
127 1s96_A Guanylate kinase, GMP k 99.3 9.3E-13 3.2E-17 103.2 3.8 114 32-163 12-145 (219)
128 2dr3_A UPF0273 protein PH0284; 99.3 1.9E-11 6.5E-16 95.6 9.3 58 114-173 127-196 (247)
129 2yhs_A FTSY, cell division pro 99.2 1.1E-11 3.8E-16 107.4 7.4 126 26-159 283-449 (503)
130 2px0_A Flagellar biosynthesis 99.2 1.1E-10 3.8E-15 95.2 12.1 135 34-179 103-247 (296)
131 1zp6_A Hypothetical protein AT 99.2 3.1E-13 1.1E-17 102.4 -3.0 88 32-119 5-131 (191)
132 1odf_A YGR205W, hypothetical 3 99.2 4.5E-12 1.5E-16 103.3 3.0 97 34-131 29-168 (290)
133 1htw_A HI0065; nucleotide-bind 99.2 2.4E-12 8.3E-17 96.0 -0.4 37 23-59 20-56 (158)
134 1nij_A Hypothetical protein YJ 99.2 9.8E-13 3.4E-17 108.3 -2.8 54 98-165 141-196 (318)
135 2rcn_A Probable GTPase ENGC; Y 99.2 1.5E-11 5.1E-16 102.9 4.0 86 25-113 205-328 (358)
136 2zr9_A Protein RECA, recombina 99.1 1.4E-10 4.9E-15 96.7 9.6 139 32-178 57-234 (349)
137 3e70_C DPA, signal recognition 99.1 8.6E-11 2.9E-15 97.3 8.0 119 32-158 125-278 (328)
138 1vma_A Cell division protein F 99.1 8.8E-11 3E-15 96.3 7.4 93 28-126 96-197 (306)
139 2r6a_A DNAB helicase, replicat 99.1 1.8E-10 6.2E-15 99.0 8.7 153 24-176 191-401 (454)
140 3c8u_A Fructokinase; YP_612366 99.1 1.1E-12 3.7E-17 101.4 -5.5 41 33-74 19-61 (208)
141 2bbw_A Adenylate kinase 4, AK4 99.1 2E-11 6.7E-16 96.5 1.4 22 35-56 26-47 (246)
142 2qm8_A GTPase/ATPase; G protei 99.0 1.9E-10 6.7E-15 95.4 5.9 35 23-57 42-76 (337)
143 1sxj_E Activator 1 40 kDa subu 99.0 3.3E-10 1.1E-14 93.4 6.1 50 114-168 133-185 (354)
144 2x8a_A Nuclear valosin-contain 98.9 1.7E-12 5.7E-17 104.9 -11.2 118 23-146 33-192 (274)
145 1ls1_A Signal recognition part 98.9 3.7E-09 1.2E-13 86.2 8.5 97 27-128 91-194 (295)
146 3lnc_A Guanylate kinase, GMP k 98.9 2.9E-10 9.9E-15 88.9 1.7 36 24-59 15-51 (231)
147 2f1r_A Molybdopterin-guanine d 98.9 1.2E-10 4.3E-15 87.8 -1.4 106 37-145 3-161 (171)
148 3tr0_A Guanylate kinase, GMP k 98.9 1.1E-09 3.8E-14 83.4 3.3 29 30-58 1-29 (205)
149 3euj_A Chromosome partition pr 98.8 2.9E-09 9.8E-14 92.2 4.1 33 23-56 17-49 (483)
150 3hr8_A Protein RECA; alpha and 98.8 5.6E-08 1.9E-12 81.2 11.3 136 33-173 58-229 (356)
151 1in4_A RUVB, holliday junction 98.7 5E-10 1.7E-14 92.5 -2.3 36 22-57 30-72 (334)
152 2ce7_A Cell division protein F 98.7 1.2E-08 4.2E-13 88.2 5.3 112 25-159 40-164 (476)
153 2xau_A PRE-mRNA-splicing facto 98.7 3.1E-08 1.1E-12 90.3 7.6 136 33-171 106-265 (773)
154 3kta_A Chromosome segregation 98.7 1.4E-08 4.6E-13 76.1 4.1 31 27-58 18-48 (182)
155 2ius_A DNA translocase FTSK; n 98.7 1.5E-09 5.2E-14 94.6 -1.3 30 27-56 158-187 (512)
156 3vaa_A Shikimate kinase, SK; s 98.6 1.2E-08 4.2E-13 77.8 3.2 38 21-58 10-47 (199)
157 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 7.5E-11 2.6E-15 99.8 -10.2 60 115-180 139-206 (392)
158 3nwj_A ATSK2; P loop, shikimat 98.6 2.5E-09 8.4E-14 85.3 -1.3 50 5-58 17-70 (250)
159 4a1f_A DNAB helicase, replicat 98.6 5.6E-08 1.9E-12 80.6 6.4 125 25-158 35-165 (338)
160 1jjv_A Dephospho-COA kinase; P 98.6 3.7E-09 1.3E-13 80.9 -1.4 116 38-172 4-131 (206)
161 1lvg_A Guanylate kinase, GMP k 98.6 2.1E-08 7.1E-13 76.8 2.8 25 34-58 2-26 (198)
162 1sq5_A Pantothenate kinase; P- 98.6 8.5E-09 2.9E-13 84.3 0.4 35 24-58 49-102 (308)
163 2j41_A Guanylate kinase; GMP, 98.5 3.8E-08 1.3E-12 74.8 3.3 28 31-58 1-28 (207)
164 3a00_A Guanylate kinase, GMP k 98.5 3.9E-08 1.3E-12 74.3 2.7 23 36-58 1-23 (186)
165 3bh0_A DNAB-like replicative h 98.4 2.8E-07 9.4E-12 75.5 6.4 127 25-158 57-190 (315)
166 1kgd_A CASK, peripheral plasma 98.4 1E-07 3.5E-12 71.6 3.2 24 35-58 4-27 (180)
167 2qby_A CDC6 homolog 1, cell di 98.4 2.9E-07 9.9E-12 75.8 6.2 121 34-159 43-173 (386)
168 1fnn_A CDC6P, cell division co 98.4 6.1E-07 2.1E-11 74.2 7.9 116 35-159 41-169 (389)
169 4eun_A Thermoresistant glucoki 98.4 1.2E-07 3.9E-12 72.4 3.2 28 30-57 23-50 (200)
170 3kl4_A SRP54, signal recogniti 98.4 1.3E-06 4.6E-11 74.6 10.0 100 35-138 96-202 (433)
171 1zu4_A FTSY; GTPase, signal re 98.4 7.4E-07 2.5E-11 73.3 7.6 34 26-59 95-128 (320)
172 1f2t_A RAD50 ABC-ATPase; DNA d 98.4 2.6E-07 8.8E-12 67.7 4.3 32 28-60 16-47 (149)
173 1v5w_A DMC1, meiotic recombina 98.4 1.3E-06 4.4E-11 72.4 8.7 127 32-158 118-273 (343)
174 2oap_1 GSPE-2, type II secreti 98.4 4.1E-08 1.4E-12 85.6 -0.7 33 24-56 248-280 (511)
175 1u0l_A Probable GTPase ENGC; p 98.3 1.1E-07 3.9E-12 77.3 1.7 30 32-61 165-202 (301)
176 2e87_A Hypothetical protein PH 98.3 1.6E-07 5.6E-12 78.0 2.5 115 35-158 166-291 (357)
177 1u94_A RECA protein, recombina 98.3 4.4E-06 1.5E-10 69.6 11.2 137 33-176 60-234 (356)
178 1svm_A Large T antigen; AAA+ f 98.3 8.7E-08 3E-12 80.6 0.7 34 24-57 157-190 (377)
179 3tau_A Guanylate kinase, GMP k 98.3 3.1E-07 1.1E-11 70.6 3.3 25 34-58 6-30 (208)
180 3uie_A Adenylyl-sulfate kinase 98.3 1.2E-07 4.1E-12 72.3 0.8 35 25-59 14-48 (200)
181 3k1j_A LON protease, ATP-depen 98.3 7.6E-09 2.6E-13 91.9 -7.0 38 21-58 45-82 (604)
182 1p9r_A General secretion pathw 98.3 1.7E-07 5.9E-12 79.8 1.5 30 25-56 158-187 (418)
183 2z4s_A Chromosomal replication 98.3 1.5E-06 5E-11 74.4 7.1 102 36-158 130-236 (440)
184 2vp4_A Deoxynucleoside kinase; 98.2 3.2E-07 1.1E-11 71.5 2.2 28 29-56 13-40 (230)
185 1ega_A Protein (GTP-binding pr 98.2 6.3E-07 2.1E-11 72.9 3.9 66 99-169 101-170 (301)
186 1knq_A Gluconate kinase; ALFA/ 98.2 6.2E-07 2.1E-11 66.5 3.5 25 34-58 6-30 (175)
187 1ixz_A ATP-dependent metallopr 98.2 3E-07 1E-11 72.4 0.9 33 24-58 39-71 (254)
188 3ney_A 55 kDa erythrocyte memb 98.2 8.9E-07 3.1E-11 68.0 3.4 28 30-57 13-40 (197)
189 2yv5_A YJEQ protein; hydrolase 98.2 5.7E-07 1.9E-11 73.3 2.4 26 32-57 161-186 (302)
190 2z43_A DNA repair and recombin 98.2 1.5E-06 5.1E-11 71.3 4.8 127 32-158 103-257 (324)
191 1t9h_A YLOQ, probable GTPase E 98.2 3E-07 1E-11 75.3 0.4 26 31-56 168-193 (307)
192 4e22_A Cytidylate kinase; P-lo 98.2 9.7E-07 3.3E-11 69.9 3.3 23 34-56 25-47 (252)
193 1iy2_A ATP-dependent metallopr 98.2 3.8E-07 1.3E-11 73.0 0.9 33 24-58 63-95 (278)
194 3qks_A DNA double-strand break 98.1 1.5E-06 5.3E-11 66.7 4.3 32 28-60 16-47 (203)
195 1w1w_A Structural maintenance 98.1 1.2E-06 4.1E-11 74.5 3.9 27 31-57 21-47 (430)
196 1kag_A SKI, shikimate kinase I 98.1 9.3E-07 3.2E-11 65.3 2.8 24 35-58 3-26 (173)
197 3b9p_A CG5977-PA, isoform A; A 98.1 9.1E-06 3.1E-10 65.1 8.8 72 35-128 53-126 (297)
198 1qhl_A Protein (cell division 98.1 8.8E-08 3E-12 75.2 -3.3 27 30-57 22-48 (227)
199 2b8t_A Thymidine kinase; deoxy 98.1 1.1E-05 3.9E-10 62.9 8.8 126 34-172 10-150 (223)
200 3llm_A ATP-dependent RNA helic 98.1 2.1E-05 7.3E-10 61.2 10.3 24 33-56 73-96 (235)
201 1rz3_A Hypothetical protein rb 98.1 1.7E-06 5.6E-11 66.1 3.6 26 33-58 19-44 (201)
202 3bos_A Putative DNA replicatio 98.1 6.4E-06 2.2E-10 63.2 6.9 25 35-59 51-75 (242)
203 2q6t_A DNAB replication FORK h 98.1 2.7E-05 9.3E-10 66.5 10.8 127 25-158 189-319 (444)
204 2qt1_A Nicotinamide riboside k 98.1 2.3E-06 7.7E-11 65.3 3.5 42 30-74 15-56 (207)
205 4ad8_A DNA repair protein RECN 98.0 1.2E-06 4.1E-11 76.3 1.5 34 25-59 50-83 (517)
206 3tqc_A Pantothenate kinase; bi 98.0 7.2E-07 2.5E-11 73.5 0.0 37 23-59 73-115 (321)
207 3m6a_A ATP-dependent protease 98.0 1.4E-06 4.8E-11 76.5 1.8 34 25-59 98-131 (543)
208 2w58_A DNAI, primosome compone 98.0 1.1E-05 3.8E-10 61.0 6.6 23 37-59 55-77 (202)
209 1xp8_A RECA protein, recombina 98.0 7.8E-05 2.7E-09 62.3 12.1 136 33-175 71-244 (366)
210 1l8q_A Chromosomal replication 98.0 4.5E-06 1.5E-10 68.0 4.4 26 35-60 36-61 (324)
211 4eaq_A DTMP kinase, thymidylat 98.0 3.6E-06 1.2E-10 65.8 3.5 34 25-58 12-48 (229)
212 2i1q_A DNA repair and recombin 97.9 1.6E-05 5.4E-10 64.9 6.7 142 32-173 94-290 (322)
213 1y63_A LMAJ004144AAA protein; 97.9 5.4E-06 1.8E-10 62.2 3.4 31 28-58 2-32 (184)
214 2pez_A Bifunctional 3'-phospho 97.9 5.8E-06 2E-10 61.5 3.4 26 34-59 3-28 (179)
215 1ypw_A Transitional endoplasmi 97.9 1.3E-05 4.4E-10 73.5 6.2 27 32-58 234-260 (806)
216 3cr8_A Sulfate adenylyltranfer 97.9 4.3E-06 1.5E-10 73.6 2.5 27 32-58 365-391 (552)
217 2p67_A LAO/AO transport system 97.9 2.6E-06 8.8E-11 70.4 1.0 36 23-58 43-78 (341)
218 1cke_A CK, MSSA, protein (cyti 97.9 7.2E-06 2.4E-10 63.0 3.3 21 36-56 5-25 (227)
219 3io5_A Recombination and repai 97.9 0.00016 5.5E-09 59.4 11.5 119 33-158 26-171 (333)
220 1oix_A RAS-related protein RAB 97.8 8.5E-06 2.9E-10 61.3 3.1 19 38-56 31-49 (191)
221 2dy1_A Elongation factor G; tr 97.8 1.8E-05 6.2E-10 71.0 5.6 28 30-57 3-30 (665)
222 2if2_A Dephospho-COA kinase; a 97.8 8.7E-06 3E-10 61.7 3.1 21 38-58 3-23 (204)
223 2vhj_A Ntpase P4, P4; non- hyd 97.8 6.6E-05 2.3E-09 61.8 8.2 28 32-59 119-146 (331)
224 3auy_A DNA double-strand break 97.8 1.7E-05 5.7E-10 66.2 4.7 32 27-59 17-48 (371)
225 3cmw_A Protein RECA, recombina 97.8 0.00022 7.5E-09 69.7 12.9 137 33-176 729-903 (1706)
226 2v1u_A Cell division control p 97.8 5.2E-05 1.8E-09 62.2 7.6 26 34-59 42-67 (387)
227 2qor_A Guanylate kinase; phosp 97.8 1E-05 3.5E-10 61.6 3.1 26 33-58 9-34 (204)
228 2orw_A Thymidine kinase; TMTK, 97.8 1.5E-05 5.1E-10 60.2 3.8 22 35-56 2-23 (184)
229 2f9l_A RAB11B, member RAS onco 97.8 1.2E-05 4.2E-10 60.6 3.1 34 109-144 132-166 (199)
230 4fcw_A Chaperone protein CLPB; 97.8 5.6E-05 1.9E-09 60.6 7.2 24 37-60 48-71 (311)
231 2r8r_A Sensor protein; KDPD, P 97.8 1.3E-05 4.5E-10 62.8 3.1 120 34-158 3-126 (228)
232 3bgw_A DNAB-like replicative h 97.7 6.1E-05 2.1E-09 64.5 7.3 33 26-58 187-219 (444)
233 1jbk_A CLPB protein; beta barr 97.7 0.0003 1E-08 51.5 10.2 26 34-59 41-66 (195)
234 3cm0_A Adenylate kinase; ATP-b 97.7 2.2E-05 7.7E-10 58.4 3.4 24 34-57 2-25 (186)
235 2yvu_A Probable adenylyl-sulfa 97.7 2.4E-05 8.3E-10 58.4 3.4 29 31-59 8-36 (186)
236 3cmw_A Protein RECA, recombina 97.7 0.00032 1.1E-08 68.6 11.5 136 33-175 380-553 (1706)
237 1xx6_A Thymidine kinase; NESG, 97.7 0.00027 9.3E-09 53.7 9.1 123 34-172 6-142 (191)
238 1m7g_A Adenylylsulfate kinase; 97.6 3.3E-05 1.1E-09 59.1 3.4 29 31-59 20-48 (211)
239 3t61_A Gluconokinase; PSI-biol 97.6 2.5E-05 8.7E-10 59.1 2.8 23 36-58 18-40 (202)
240 2gj8_A MNME, tRNA modification 97.6 3.5E-05 1.2E-09 56.9 3.2 23 34-56 2-24 (172)
241 2www_A Methylmalonic aciduria 97.6 3.4E-05 1.2E-09 63.9 3.5 25 34-58 72-96 (349)
242 2p65_A Hypothetical protein PF 97.6 0.00031 1.1E-08 51.4 8.4 25 35-59 42-66 (187)
243 2j9r_A Thymidine kinase; TK1, 97.6 0.0004 1.4E-08 53.8 9.2 123 34-172 26-162 (214)
244 3dm5_A SRP54, signal recogniti 97.6 0.00069 2.4E-08 58.0 11.5 94 35-134 99-199 (443)
245 1njg_A DNA polymerase III subu 97.6 0.00098 3.4E-08 50.3 11.4 21 38-58 47-67 (250)
246 3h4m_A Proteasome-activating n 97.6 0.00011 3.9E-09 58.2 6.0 25 34-58 49-73 (285)
247 1sxj_D Activator 1 41 kDa subu 97.6 4.5E-05 1.5E-09 62.1 3.7 35 25-59 45-81 (353)
248 3t15_A Ribulose bisphosphate c 97.5 0.00027 9.1E-09 57.0 8.1 22 37-58 37-58 (293)
249 1q3t_A Cytidylate kinase; nucl 97.5 4.6E-05 1.6E-09 59.3 3.3 24 34-57 14-37 (236)
250 3cmu_A Protein RECA, recombina 97.5 0.00077 2.6E-08 66.9 12.4 136 33-176 380-554 (2050)
251 1sxj_C Activator 1 40 kDa subu 97.5 8.3E-06 2.8E-10 66.9 -1.1 38 22-59 30-69 (340)
252 1m2o_B GTP-binding protein SAR 97.5 4.6E-05 1.6E-09 57.0 3.1 32 24-56 12-43 (190)
253 2ga8_A Hypothetical 39.9 kDa p 97.5 1.3E-05 4.6E-10 66.7 0.0 34 24-57 10-45 (359)
254 2dhr_A FTSH; AAA+ protein, hex 97.5 2.3E-05 7.9E-10 68.1 1.4 33 24-58 54-86 (499)
255 2qgz_A Helicase loader, putati 97.5 0.00022 7.4E-09 58.1 7.1 26 36-61 152-177 (308)
256 3lxx_A GTPase IMAP family memb 97.5 5.5E-05 1.9E-09 58.8 3.4 19 38-56 31-49 (239)
257 3syl_A Protein CBBX; photosynt 97.5 0.0014 4.9E-08 52.3 11.7 26 35-60 66-91 (309)
258 1q57_A DNA primase/helicase; d 97.5 0.00048 1.6E-08 59.5 9.3 26 32-57 238-263 (503)
259 2wji_A Ferrous iron transport 97.5 6.6E-05 2.3E-09 54.7 3.1 20 37-56 4-23 (165)
260 1f6b_A SAR1; gtpases, N-termin 97.4 2.3E-05 7.8E-10 59.2 0.6 32 24-56 14-45 (198)
261 1lv7_A FTSH; alpha/beta domain 97.4 6.8E-05 2.3E-09 58.8 3.1 31 26-58 37-67 (257)
262 3kb2_A SPBC2 prophage-derived 97.4 7.5E-05 2.6E-09 54.5 3.0 21 38-58 3-23 (173)
263 2rhm_A Putative kinase; P-loop 97.4 9.6E-05 3.3E-09 55.0 3.5 25 34-58 3-27 (193)
264 3t34_A Dynamin-related protein 97.4 7E-05 2.4E-09 62.0 3.0 31 23-56 24-54 (360)
265 2p5t_B PEZT; postsegregational 97.4 6.6E-05 2.2E-09 59.2 2.5 27 32-58 28-54 (253)
266 3ice_A Transcription terminati 97.4 5E-05 1.7E-09 64.1 1.8 32 28-59 166-197 (422)
267 1vht_A Dephospho-COA kinase; s 97.4 0.00011 3.6E-09 56.3 3.5 24 35-58 3-26 (218)
268 3lw7_A Adenylate kinase relate 97.4 9.6E-05 3.3E-09 53.7 3.1 19 38-56 3-21 (179)
269 1qhx_A CPT, protein (chloramph 97.4 9.7E-05 3.3E-09 54.4 3.1 23 36-58 3-25 (178)
270 1np6_A Molybdopterin-guanine d 97.3 0.0001 3.6E-09 55.2 3.1 22 37-58 7-28 (174)
271 1kht_A Adenylate kinase; phosp 97.3 0.00011 3.7E-09 54.5 3.1 23 36-58 3-25 (192)
272 2wjg_A FEOB, ferrous iron tran 97.3 0.00011 3.7E-09 54.3 3.1 20 37-56 8-27 (188)
273 1j8m_F SRP54, signal recogniti 97.3 6.2E-05 2.1E-09 61.1 1.8 32 27-59 89-121 (297)
274 1ypw_A Transitional endoplasmi 97.3 5E-05 1.7E-09 69.6 1.3 75 30-124 505-579 (806)
275 1g5t_A COB(I)alamin adenosyltr 97.3 0.0014 4.7E-08 50.1 9.1 57 114-174 119-180 (196)
276 3d8b_A Fidgetin-like protein 1 97.3 0.00069 2.4E-08 56.0 8.0 24 35-58 116-139 (357)
277 2ze6_A Isopentenyl transferase 97.3 0.00012 4.2E-09 57.8 3.2 22 37-58 2-23 (253)
278 2zts_A Putative uncharacterize 97.3 0.00053 1.8E-08 52.8 6.9 25 33-57 27-51 (251)
279 3iij_A Coilin-interacting nucl 97.3 0.00011 3.7E-09 54.5 2.6 25 34-58 9-33 (180)
280 2ffh_A Protein (FFH); SRP54, s 97.3 0.00012 4E-09 62.5 2.8 30 27-58 91-120 (425)
281 1gvn_B Zeta; postsegregational 97.3 0.00015 5.1E-09 58.4 3.3 26 33-58 30-55 (287)
282 1via_A Shikimate kinase; struc 97.3 0.00013 4.6E-09 53.8 2.8 20 38-57 6-25 (175)
283 2zej_A Dardarin, leucine-rich 97.2 0.00014 4.9E-09 53.9 2.9 19 38-56 4-22 (184)
284 4b4t_K 26S protease regulatory 97.2 0.0019 6.4E-08 55.0 9.9 24 35-58 205-228 (428)
285 1ly1_A Polynucleotide kinase; 97.2 0.00019 6.4E-09 52.7 3.2 22 37-58 3-24 (181)
286 2jaq_A Deoxyguanosine kinase; 97.2 0.00018 6E-09 53.9 3.1 21 38-58 2-22 (205)
287 2v54_A DTMP kinase, thymidylat 97.2 0.0002 7E-09 53.8 3.4 25 34-58 2-26 (204)
288 1ex7_A Guanylate kinase; subst 97.2 0.00017 5.9E-09 54.6 2.9 19 38-56 3-21 (186)
289 3e2i_A Thymidine kinase; Zn-bi 97.2 0.001 3.5E-08 51.6 7.3 122 34-172 26-162 (219)
290 3r20_A Cytidylate kinase; stru 97.2 0.00018 6.3E-09 56.4 3.1 22 36-57 9-30 (233)
291 1gtv_A TMK, thymidylate kinase 97.2 0.0001 3.5E-09 55.8 1.5 21 38-58 2-22 (214)
292 1uf9_A TT1252 protein; P-loop, 97.2 0.00024 8.2E-09 53.2 3.5 23 36-58 8-30 (203)
293 2plr_A DTMP kinase, probable t 97.2 0.00025 8.4E-09 53.4 3.4 24 35-58 3-26 (213)
294 1tev_A UMP-CMP kinase; ploop, 97.2 0.00024 8.3E-09 52.7 3.3 22 36-57 3-24 (196)
295 2c95_A Adenylate kinase 1; tra 97.1 0.00025 8.5E-09 52.9 3.3 24 34-57 7-30 (196)
296 1nn5_A Similar to deoxythymidy 97.1 0.00026 8.8E-09 53.6 3.3 26 33-58 6-31 (215)
297 2orv_A Thymidine kinase; TP4A 97.1 0.0024 8.3E-08 50.0 8.8 120 34-172 17-150 (234)
298 2qz4_A Paraplegin; AAA+, SPG7, 97.1 0.0012 4E-08 51.4 7.0 25 34-58 37-61 (262)
299 3cmu_A Protein RECA, recombina 97.1 0.0028 9.4E-08 63.0 11.0 120 32-158 728-868 (2050)
300 2wwf_A Thymidilate kinase, put 97.1 0.00027 9.3E-09 53.4 3.2 25 34-58 8-32 (212)
301 2qag_A Septin-2, protein NEDD5 97.1 0.00012 4.3E-09 60.8 1.3 28 23-56 30-57 (361)
302 2vli_A Antibiotic resistance p 97.1 0.00018 6.1E-09 53.2 1.9 24 35-58 4-27 (183)
303 3trf_A Shikimate kinase, SK; a 97.1 0.00031 1.1E-08 52.1 3.1 23 36-58 5-27 (185)
304 1sxj_A Activator 1 95 kDa subu 97.0 0.0019 6.6E-08 56.0 8.3 23 36-58 77-99 (516)
305 4b4t_L 26S protease subunit RP 97.0 0.0036 1.2E-07 53.4 9.6 25 34-58 213-237 (437)
306 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.0012 4.2E-08 53.8 6.5 25 34-58 43-67 (322)
307 2z0h_A DTMP kinase, thymidylat 97.0 0.00036 1.2E-08 52.0 3.1 22 38-59 2-23 (197)
308 1nks_A Adenylate kinase; therm 97.0 0.00037 1.3E-08 51.6 3.1 21 38-58 3-23 (194)
309 3ake_A Cytidylate kinase; CMP 97.0 0.00038 1.3E-08 52.3 3.1 21 38-58 4-24 (208)
310 1qvr_A CLPB protein; coiled co 97.0 0.0016 5.3E-08 59.9 7.7 25 37-61 589-613 (854)
311 3cf0_A Transitional endoplasmi 97.0 0.00032 1.1E-08 56.6 2.7 27 32-58 45-71 (301)
312 4ag6_A VIRB4 ATPase, type IV s 97.0 0.00045 1.6E-08 57.6 3.7 22 35-56 34-55 (392)
313 2ohf_A Protein OLA1, GTP-bindi 97.0 0.00037 1.3E-08 58.8 3.0 25 32-56 18-42 (396)
314 3hu3_A Transitional endoplasmi 97.0 0.0011 3.7E-08 57.4 6.0 25 34-58 236-260 (489)
315 2qtf_A Protein HFLX, GTP-bindi 96.9 0.00041 1.4E-08 57.8 3.1 19 38-56 181-199 (364)
316 1qf9_A UMP/CMP kinase, protein 96.9 0.00053 1.8E-08 50.7 3.4 22 36-57 6-27 (194)
317 1xjc_A MOBB protein homolog; s 96.9 0.00049 1.7E-08 51.3 3.1 22 37-58 5-26 (169)
318 3eie_A Vacuolar protein sortin 96.9 0.0012 4.2E-08 53.6 5.5 24 35-58 50-73 (322)
319 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0006 2.1E-08 53.8 3.4 24 35-58 3-26 (260)
320 2bwj_A Adenylate kinase 5; pho 96.9 0.00056 1.9E-08 51.0 3.1 24 34-57 10-33 (199)
321 1aky_A Adenylate kinase; ATP:A 96.9 0.00058 2E-08 52.2 3.2 23 35-57 3-25 (220)
322 1mky_A Probable GTP-binding pr 96.9 0.00051 1.8E-08 58.4 3.1 20 37-56 181-200 (439)
323 3k53_A Ferrous iron transport 96.9 0.00054 1.8E-08 54.3 3.0 19 38-56 5-23 (271)
324 1zd8_A GTP:AMP phosphotransfer 96.9 0.00057 2E-08 52.6 3.1 24 34-57 5-28 (227)
325 1ukz_A Uridylate kinase; trans 96.8 0.00072 2.5E-08 50.8 3.5 24 34-57 13-36 (203)
326 2pbr_A DTMP kinase, thymidylat 96.8 0.00062 2.1E-08 50.4 3.1 21 38-58 2-22 (195)
327 2v3c_C SRP54, signal recogniti 96.8 0.003 1E-07 53.8 7.6 23 37-59 100-122 (432)
328 1e6c_A Shikimate kinase; phosp 96.8 0.00058 2E-08 49.9 2.8 22 37-58 3-24 (173)
329 3fb4_A Adenylate kinase; psych 96.8 0.00063 2.2E-08 51.7 3.1 20 38-57 2-21 (216)
330 1zak_A Adenylate kinase; ATP:A 96.8 0.00063 2.2E-08 52.1 3.0 23 35-57 4-26 (222)
331 3vfd_A Spastin; ATPase, microt 96.8 0.0022 7.6E-08 53.4 6.5 24 35-58 147-170 (389)
332 2pt5_A Shikimate kinase, SK; a 96.8 0.00074 2.5E-08 49.1 3.1 21 38-58 2-22 (168)
333 2cdn_A Adenylate kinase; phosp 96.8 0.0008 2.7E-08 50.6 3.3 25 34-58 18-42 (201)
334 1w5s_A Origin recognition comp 96.8 0.0029 9.8E-08 52.3 6.9 24 35-58 49-74 (412)
335 1fzq_A ADP-ribosylation factor 96.8 0.00073 2.5E-08 49.9 2.9 20 37-56 17-36 (181)
336 2qp9_X Vacuolar protein sortin 96.8 0.0016 5.6E-08 53.8 5.2 24 35-58 83-106 (355)
337 3dl0_A Adenylate kinase; phosp 96.7 0.0008 2.7E-08 51.2 3.1 19 38-56 2-20 (216)
338 1moz_A ARL1, ADP-ribosylation 96.7 0.00058 2E-08 49.9 2.2 22 35-56 17-38 (183)
339 2iyv_A Shikimate kinase, SK; t 96.7 0.00074 2.5E-08 50.0 2.7 21 37-57 3-23 (184)
340 2ged_A SR-beta, signal recogni 96.7 0.00088 3E-08 49.5 3.1 20 37-56 49-68 (193)
341 2qmh_A HPR kinase/phosphorylas 96.7 0.0015 5E-08 50.2 4.3 41 15-56 14-54 (205)
342 2xb4_A Adenylate kinase; ATP-b 96.7 0.00091 3.1E-08 51.5 3.1 21 38-58 2-22 (223)
343 1zuh_A Shikimate kinase; alpha 96.7 0.00095 3.3E-08 48.7 3.1 23 36-58 7-29 (168)
344 1z2a_A RAS-related protein RAB 96.7 0.00092 3.1E-08 47.9 2.9 19 38-56 7-25 (168)
345 1a7j_A Phosphoribulokinase; tr 96.7 0.00045 1.5E-08 55.7 1.3 24 35-58 4-27 (290)
346 4b4t_J 26S protease regulatory 96.7 0.0051 1.8E-07 51.9 7.8 24 35-58 181-204 (405)
347 2ce2_X GTPase HRAS; signaling 96.7 0.00097 3.3E-08 47.4 2.9 19 38-56 5-23 (166)
348 1w4r_A Thymidine kinase; type 96.6 0.0024 8.3E-08 48.7 5.1 117 35-171 19-150 (195)
349 1uj2_A Uridine-cytidine kinase 96.6 0.001 3.5E-08 52.1 3.1 23 36-58 22-44 (252)
350 2grj_A Dephospho-COA kinase; T 96.6 0.0013 4.4E-08 49.9 3.5 24 35-58 11-34 (192)
351 2dyk_A GTP-binding protein; GT 96.6 0.0011 3.6E-08 47.3 2.9 19 38-56 3-21 (161)
352 4edh_A DTMP kinase, thymidylat 96.6 0.0012 4.2E-08 50.8 3.4 25 34-58 4-28 (213)
353 1qvr_A CLPB protein; coiled co 96.6 0.013 4.6E-07 53.7 10.8 25 36-60 191-215 (854)
354 3q72_A GTP-binding protein RAD 96.6 0.0011 3.6E-08 47.6 2.9 18 39-56 5-22 (166)
355 1kao_A RAP2A; GTP-binding prot 96.6 0.0011 3.7E-08 47.3 2.9 19 38-56 5-23 (167)
356 3v9p_A DTMP kinase, thymidylat 96.6 0.00094 3.2E-08 52.1 2.6 25 34-58 23-47 (227)
357 3tlx_A Adenylate kinase 2; str 96.6 0.0014 4.7E-08 51.3 3.5 24 34-57 27-50 (243)
358 2f6r_A COA synthase, bifunctio 96.6 0.0011 3.8E-08 53.0 3.1 22 36-57 75-96 (281)
359 1u8z_A RAS-related protein RAL 96.6 0.0011 3.9E-08 47.2 2.9 19 38-56 6-24 (168)
360 1z0j_A RAB-22, RAS-related pro 96.6 0.0011 3.9E-08 47.5 2.9 19 38-56 8-26 (170)
361 1ek0_A Protein (GTP-binding pr 96.6 0.0011 3.9E-08 47.4 2.9 19 38-56 5-23 (170)
362 2erx_A GTP-binding protein DI- 96.6 0.0012 4E-08 47.4 2.9 19 38-56 5-23 (172)
363 1z08_A RAS-related protein RAB 96.6 0.0012 4.1E-08 47.5 2.9 19 38-56 8-26 (170)
364 1c1y_A RAS-related protein RAP 96.6 0.0012 4.1E-08 47.2 2.9 19 38-56 5-23 (167)
365 3tw8_B RAS-related protein RAB 96.6 0.0012 4.1E-08 47.9 2.9 19 38-56 11-29 (181)
366 2lkc_A Translation initiation 96.6 0.0014 4.9E-08 47.5 3.3 22 35-56 7-28 (178)
367 1ky3_A GTP-binding protein YPT 96.6 0.0012 4.2E-08 47.9 2.9 19 38-56 10-28 (182)
368 1svi_A GTP-binding protein YSX 96.6 0.0012 4.1E-08 48.8 2.9 20 37-56 24-43 (195)
369 1g16_A RAS-related protein SEC 96.6 0.0012 4.2E-08 47.3 2.9 19 38-56 5-23 (170)
370 3q85_A GTP-binding protein REM 96.6 0.0012 4.2E-08 47.4 2.9 18 39-56 5-22 (169)
371 1wms_A RAB-9, RAB9, RAS-relate 96.6 0.0012 4.2E-08 47.8 2.9 19 38-56 9-27 (177)
372 1ltq_A Polynucleotide kinase; 96.5 0.0013 4.6E-08 52.5 3.2 22 37-58 3-24 (301)
373 2nzj_A GTP-binding protein REM 96.5 0.0013 4.4E-08 47.5 2.9 19 38-56 6-24 (175)
374 4b4t_M 26S protease regulatory 96.5 0.0056 1.9E-07 52.2 7.2 26 33-58 212-237 (434)
375 3lv8_A DTMP kinase, thymidylat 96.5 0.0014 4.9E-08 51.3 3.2 24 35-58 26-49 (236)
376 1ojl_A Transcriptional regulat 96.5 0.0029 1E-07 51.1 5.1 25 34-58 23-47 (304)
377 3pqc_A Probable GTP-binding pr 96.5 0.0015 5.1E-08 48.0 3.1 19 38-56 25-43 (195)
378 1upt_A ARL1, ADP-ribosylation 96.5 0.0014 4.8E-08 47.1 2.9 20 37-56 8-27 (171)
379 2cxx_A Probable GTP-binding pr 96.5 0.0014 4.7E-08 48.1 2.9 18 39-56 4-21 (190)
380 4tmk_A Protein (thymidylate ki 96.5 0.0015 5.2E-08 50.3 3.2 24 35-58 2-25 (213)
381 3b1v_A Ferrous iron uptake tra 96.5 0.0014 4.8E-08 52.3 3.1 19 38-56 5-23 (272)
382 1e4v_A Adenylate kinase; trans 96.5 0.0015 5.1E-08 49.7 3.1 21 38-58 2-22 (214)
383 2fn4_A P23, RAS-related protei 96.5 0.0014 4.9E-08 47.4 2.9 19 38-56 11-29 (181)
384 3zvl_A Bifunctional polynucleo 96.5 0.0016 5.6E-08 55.0 3.4 27 31-57 253-279 (416)
385 4dsu_A GTPase KRAS, isoform 2B 96.5 0.0015 5.3E-08 47.7 2.9 19 38-56 6-24 (189)
386 1r2q_A RAS-related protein RAB 96.5 0.0016 5.4E-08 46.6 2.9 19 38-56 8-26 (170)
387 2y8e_A RAB-protein 6, GH09086P 96.4 0.0016 5.5E-08 47.1 2.9 19 38-56 16-34 (179)
388 3be4_A Adenylate kinase; malar 96.4 0.0016 5.6E-08 49.7 2.9 24 35-58 4-27 (217)
389 3bc1_A RAS-related protein RAB 96.4 0.0017 5.7E-08 47.6 2.9 19 38-56 13-31 (195)
390 3tqf_A HPR(Ser) kinase; transf 96.4 0.0039 1.3E-07 46.8 4.9 33 23-56 4-36 (181)
391 2oil_A CATX-8, RAS-related pro 96.4 0.0017 5.8E-08 48.0 2.9 19 38-56 27-45 (193)
392 2a9k_A RAS-related protein RAL 96.4 0.0017 6E-08 47.2 2.9 19 38-56 20-38 (187)
393 1r8s_A ADP-ribosylation factor 96.4 0.0018 6.1E-08 46.3 2.9 18 39-56 3-20 (164)
394 3umf_A Adenylate kinase; rossm 96.4 0.0021 7.2E-08 49.7 3.4 26 31-56 24-49 (217)
395 3ihw_A Centg3; RAS, centaurin, 96.4 0.0018 6E-08 48.0 2.9 19 38-56 22-40 (184)
396 1z0f_A RAB14, member RAS oncog 96.4 0.0018 6.2E-08 46.8 2.9 19 38-56 17-35 (179)
397 2bme_A RAB4A, RAS-related prot 96.4 0.0018 6.1E-08 47.4 2.9 19 38-56 12-30 (186)
398 2ocp_A DGK, deoxyguanosine kin 96.4 0.0021 7.2E-08 49.8 3.4 24 35-58 1-24 (241)
399 3con_A GTPase NRAS; structural 96.4 0.0019 6.3E-08 47.6 2.9 19 38-56 23-41 (190)
400 2hxs_A RAB-26, RAS-related pro 96.4 0.0019 6.5E-08 46.8 2.9 19 38-56 8-26 (178)
401 3ld9_A DTMP kinase, thymidylat 96.4 0.0023 8E-08 49.7 3.5 26 34-59 19-44 (223)
402 3t1o_A Gliding protein MGLA; G 96.4 0.0019 6.5E-08 47.5 2.9 20 38-57 16-35 (198)
403 3kkq_A RAS-related protein M-R 96.4 0.0019 6.6E-08 47.1 2.9 20 38-57 20-39 (183)
404 3tmk_A Thymidylate kinase; pho 96.3 0.0022 7.4E-08 49.6 3.3 25 34-58 3-27 (216)
405 1ko7_A HPR kinase/phosphatase; 96.3 0.0041 1.4E-07 50.8 5.0 33 23-56 132-164 (314)
406 3clv_A RAB5 protein, putative; 96.3 0.0019 6.6E-08 47.5 2.9 19 38-56 9-27 (208)
407 1m7b_A RND3/RHOE small GTP-bin 96.3 0.0019 6.6E-08 47.5 2.9 19 38-56 9-27 (184)
408 2efe_B Small GTP-binding prote 96.3 0.002 7E-08 46.8 2.9 19 38-56 14-32 (181)
409 2g6b_A RAS-related protein RAB 96.3 0.0021 7.1E-08 46.7 2.9 19 38-56 12-30 (180)
410 3t5g_A GTP-binding protein RHE 96.3 0.0021 7.1E-08 46.9 2.9 19 38-56 8-26 (181)
411 1nrj_B SR-beta, signal recogni 96.3 0.0021 7E-08 48.6 2.9 19 38-56 14-32 (218)
412 2bov_A RAla, RAS-related prote 96.3 0.0021 7.2E-08 47.8 2.9 19 38-56 16-34 (206)
413 3cbq_A GTP-binding protein REM 96.3 0.0017 5.9E-08 48.6 2.3 19 38-56 25-43 (195)
414 4b4t_I 26S protease regulatory 96.3 0.012 4.1E-07 50.1 7.6 25 34-58 214-238 (437)
415 3tkl_A RAS-related protein RAB 96.3 0.0022 7.6E-08 47.3 2.9 19 38-56 18-36 (196)
416 3pxi_A Negative regulator of g 96.3 0.013 4.4E-07 53.0 8.4 24 38-61 523-546 (758)
417 3lxw_A GTPase IMAP family memb 96.3 0.0021 7.3E-08 50.3 2.9 20 37-56 22-41 (247)
418 1mh1_A RAC1; GTP-binding, GTPa 96.3 0.0023 7.8E-08 46.6 2.9 19 38-56 7-25 (186)
419 1vg8_A RAS-related protein RAB 96.3 0.0022 7.7E-08 47.7 2.9 19 38-56 10-28 (207)
420 2gf0_A GTP-binding protein DI- 96.3 0.0023 7.7E-08 47.3 2.9 19 38-56 10-28 (199)
421 1ak2_A Adenylate kinase isoenz 96.3 0.0026 9E-08 49.1 3.3 24 35-58 15-38 (233)
422 2zan_A Vacuolar protein sortin 96.3 0.0029 9.9E-08 53.9 3.8 24 35-58 166-189 (444)
423 1ksh_A ARF-like protein 2; sma 96.2 0.0024 8E-08 46.9 2.9 22 35-56 17-38 (186)
424 2h92_A Cytidylate kinase; ross 96.2 0.0022 7.7E-08 48.6 2.8 22 36-57 3-24 (219)
425 4b4t_H 26S protease regulatory 96.2 0.01 3.4E-07 51.0 7.0 26 33-58 240-265 (467)
426 1wf3_A GTP-binding protein; GT 96.2 0.0024 8.2E-08 51.7 3.1 20 37-56 8-27 (301)
427 2fg5_A RAB-22B, RAS-related pr 96.2 0.0024 8.1E-08 47.4 2.9 19 38-56 25-43 (192)
428 3t5d_A Septin-7; GTP-binding p 96.2 0.0022 7.7E-08 50.8 2.9 18 39-56 11-28 (274)
429 2wsm_A Hydrogenase expression/ 96.2 0.0026 8.8E-08 48.2 3.1 22 36-57 30-51 (221)
430 2gf9_A RAS-related protein RAB 96.2 0.0025 8.6E-08 47.0 2.9 19 38-56 24-42 (189)
431 2ew1_A RAS-related protein RAB 96.2 0.0025 8.5E-08 48.1 2.9 19 38-56 28-46 (201)
432 3d3q_A TRNA delta(2)-isopenten 96.2 0.0026 8.7E-08 52.6 3.1 22 37-58 8-29 (340)
433 3cf2_A TER ATPase, transitiona 96.2 0.013 4.5E-07 53.6 8.0 24 35-58 237-260 (806)
434 2dby_A GTP-binding protein; GD 96.2 0.0023 7.9E-08 53.4 2.8 19 38-56 3-21 (368)
435 2o52_A RAS-related protein RAB 96.2 0.0026 8.7E-08 47.6 2.9 19 38-56 27-45 (200)
436 2il1_A RAB12; G-protein, GDP, 96.2 0.0026 9E-08 47.2 2.9 19 38-56 28-46 (192)
437 3oes_A GTPase rhebl1; small GT 96.2 0.0026 8.9E-08 47.5 2.9 21 36-56 24-44 (201)
438 1r6b_X CLPA protein; AAA+, N-t 96.2 0.019 6.5E-07 51.8 9.0 23 38-60 490-512 (758)
439 2a5j_A RAS-related protein RAB 96.2 0.0028 9.5E-08 46.9 2.9 19 38-56 23-41 (191)
440 3dz8_A RAS-related protein RAB 96.2 0.0028 9.4E-08 46.9 2.9 18 39-56 26-43 (191)
441 1zj6_A ADP-ribosylation factor 96.2 0.0028 9.6E-08 46.6 2.9 21 36-56 16-36 (187)
442 2fv8_A H6, RHO-related GTP-bin 96.2 0.0023 7.7E-08 48.1 2.4 32 25-56 14-45 (207)
443 3exa_A TRNA delta(2)-isopenten 96.1 0.0032 1.1E-07 51.6 3.4 22 36-57 3-24 (322)
444 1z06_A RAS-related protein RAB 96.1 0.0029 9.8E-08 46.7 2.9 19 38-56 22-40 (189)
445 2a5y_B CED-4; apoptosis; HET: 96.1 0.0074 2.5E-07 52.6 5.9 116 36-164 152-280 (549)
446 3iev_A GTP-binding protein ERA 96.1 0.0029 1E-07 51.2 3.1 21 36-56 10-30 (308)
447 2h17_A ADP-ribosylation factor 96.1 0.0028 9.6E-08 46.4 2.7 19 38-56 23-41 (181)
448 1x3s_A RAS-related protein RAB 96.1 0.003 1E-07 46.4 2.9 19 38-56 17-35 (195)
449 2h57_A ADP-ribosylation factor 96.1 0.0024 8.3E-08 47.1 2.3 20 37-56 22-41 (190)
450 2cjw_A GTP-binding protein GEM 96.1 0.003 1E-07 47.1 2.9 19 38-56 8-26 (192)
451 2bcg_Y Protein YP2, GTP-bindin 96.1 0.003 1E-07 47.2 2.9 19 38-56 10-28 (206)
452 3reg_A RHO-like small GTPase; 96.1 0.0031 1E-07 46.7 2.9 19 38-56 25-43 (194)
453 1zbd_A Rabphilin-3A; G protein 96.1 0.0031 1E-07 47.0 2.9 19 38-56 10-28 (203)
454 1jal_A YCHF protein; nucleotid 96.1 0.003 1E-07 52.6 3.1 20 37-56 3-22 (363)
455 1zd9_A ADP-ribosylation factor 96.1 0.0031 1.1E-07 46.5 2.9 19 38-56 24-42 (188)
456 3bwd_D RAC-like GTP-binding pr 96.1 0.0037 1.2E-07 45.4 3.2 19 38-56 10-28 (182)
457 4hlc_A DTMP kinase, thymidylat 96.1 0.0036 1.2E-07 47.8 3.3 23 36-58 2-24 (205)
458 2xtp_A GTPase IMAP family memb 96.1 0.0033 1.1E-07 49.1 3.1 20 37-56 23-42 (260)
459 2atv_A RERG, RAS-like estrogen 96.1 0.0032 1.1E-07 46.7 2.9 20 37-56 29-48 (196)
460 1p5z_B DCK, deoxycytidine kina 96.1 0.0021 7E-08 50.6 1.8 24 34-57 22-45 (263)
461 4bas_A ADP-ribosylation factor 96.1 0.0033 1.1E-07 46.4 2.9 21 36-56 17-37 (199)
462 2b6h_A ADP-ribosylation factor 96.1 0.0033 1.1E-07 46.7 2.9 21 36-56 29-49 (192)
463 2p5s_A RAS and EF-hand domain 96.0 0.0033 1.1E-07 46.8 2.9 21 36-56 28-48 (199)
464 1gwn_A RHO-related GTP-binding 96.0 0.0033 1.1E-07 47.5 2.9 19 38-56 30-48 (205)
465 3crm_A TRNA delta(2)-isopenten 96.0 0.0037 1.3E-07 51.3 3.2 22 37-58 6-27 (323)
466 3iby_A Ferrous iron transport 96.0 0.0035 1.2E-07 49.4 3.1 19 38-56 3-21 (256)
467 1sky_E F1-ATPase, F1-ATP synth 96.0 0.003 1E-07 54.4 2.8 27 31-57 146-172 (473)
468 3a8t_A Adenylate isopentenyltr 96.0 0.0042 1.4E-07 51.3 3.5 24 35-58 39-62 (339)
469 2j1l_A RHO-related GTP-binding 96.0 0.0036 1.2E-07 47.4 2.9 19 38-56 36-54 (214)
470 2q3h_A RAS homolog gene family 96.0 0.0037 1.2E-07 46.5 2.9 20 37-56 21-40 (201)
471 3cph_A RAS-related protein SEC 96.0 0.0036 1.2E-07 46.8 2.9 20 37-56 21-40 (213)
472 2iwr_A Centaurin gamma 1; ANK 96.0 0.0027 9.2E-08 46.1 2.0 19 38-56 9-27 (178)
473 2hf9_A Probable hydrogenase ni 96.0 0.004 1.4E-07 47.3 3.1 22 36-57 38-59 (226)
474 4dhe_A Probable GTP-binding pr 96.0 0.0022 7.4E-08 48.6 1.5 20 37-56 30-49 (223)
475 3llu_A RAS-related GTP-binding 96.0 0.0038 1.3E-07 46.5 2.9 19 38-56 22-40 (196)
476 2f7s_A C25KG, RAS-related prot 96.0 0.0037 1.3E-07 47.1 2.9 19 38-56 27-45 (217)
477 2qu8_A Putative nucleolar GTP- 96.0 0.0038 1.3E-07 47.7 2.9 20 37-56 30-49 (228)
478 3c5c_A RAS-like protein 12; GD 95.9 0.004 1.4E-07 46.0 2.9 19 38-56 23-41 (187)
479 2gco_A H9, RHO-related GTP-bin 95.9 0.0041 1.4E-07 46.5 2.9 19 38-56 27-45 (201)
480 2x77_A ADP-ribosylation factor 95.9 0.0032 1.1E-07 46.3 2.2 21 36-56 22-42 (189)
481 2atx_A Small GTP binding prote 95.9 0.0042 1.5E-07 45.8 2.9 19 38-56 20-38 (194)
482 2fu5_C RAS-related protein RAB 95.9 0.0024 8.4E-08 46.6 1.5 19 38-56 10-28 (183)
483 2fh5_B SR-beta, signal recogni 95.9 0.0043 1.5E-07 46.6 2.9 19 38-56 9-27 (214)
484 3foz_A TRNA delta(2)-isopenten 95.9 0.0054 1.9E-07 50.1 3.5 23 36-58 10-32 (316)
485 3a1s_A Iron(II) transport prot 95.8 0.0049 1.7E-07 48.6 3.1 19 38-56 7-25 (258)
486 3n70_A Transport activator; si 95.8 0.0052 1.8E-07 43.9 2.9 25 34-58 22-46 (145)
487 3i8s_A Ferrous iron transport 95.8 0.0049 1.7E-07 49.0 3.1 19 38-56 5-23 (274)
488 4gzl_A RAS-related C3 botulinu 95.8 0.0048 1.7E-07 46.3 2.9 20 37-56 31-50 (204)
489 1jwy_B Dynamin A GTPase domain 95.8 0.0048 1.7E-07 49.4 3.0 20 37-56 25-44 (315)
490 2hup_A RAS-related protein RAB 95.8 0.005 1.7E-07 46.1 2.9 19 38-56 31-49 (201)
491 3sr0_A Adenylate kinase; phosp 95.8 0.0055 1.9E-07 46.9 3.1 19 38-56 2-20 (206)
492 2r62_A Cell division protease 95.8 0.0012 4.1E-08 51.8 -0.8 20 39-58 47-66 (268)
493 2chg_A Replication factor C sm 95.7 0.006 2E-07 45.4 2.9 22 38-59 40-61 (226)
494 3cnl_A YLQF, putative uncharac 95.6 0.0063 2.2E-07 48.2 3.1 19 38-56 101-119 (262)
495 3q3j_B RHO-related GTP-binding 95.6 0.0062 2.1E-07 46.1 2.9 19 38-56 29-47 (214)
496 2g3y_A GTP-binding protein GEM 95.6 0.0062 2.1E-07 46.6 2.9 19 38-56 39-57 (211)
497 2aka_B Dynamin-1; fusion prote 95.6 0.0062 2.1E-07 48.3 2.9 19 38-56 28-46 (299)
498 2j0v_A RAC-like GTP-binding pr 95.6 0.0065 2.2E-07 45.5 2.9 19 38-56 11-29 (212)
499 1h65_A Chloroplast outer envel 95.6 0.0069 2.4E-07 47.8 3.1 19 38-56 41-59 (270)
500 3cpj_B GTP-binding protein YPT 95.6 0.0066 2.3E-07 46.1 2.9 19 38-56 15-33 (223)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.4e-44 Score=292.72 Aligned_cols=178 Identities=16% Similarity=0.131 Sum_probs=143.0
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------ 60 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------ 60 (185)
|.++.++++|++..| . +...+++|+||++++|++++|+||||||||||+|+| |.|.
T Consensus 3 m~~~~l~i~~ls~~y---~-~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~ 78 (275)
T 3gfo_A 3 LEDYILKVEELNYNY---S-DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKG 78 (275)
T ss_dssp -CCEEEEEEEEEEEC---T-TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHH
T ss_pred CcCcEEEEEEEEEEE---C-CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCccccc
Confidence 345567888877655 1 234699999999999999999999999999999999 2221
Q ss_pred ---HHHhhCceecCCCC----Ccc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297 61 ---FLAQIGCFVPCDSA----TIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK 112 (185)
Q Consensus 61 ---~~~~~g~~v~~~~~----~~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~ 112 (185)
++.++| |+||++. ..+ .++++++.+++.+..++++.+||+|||||++||++
T Consensus 79 ~~~~~~~ig-~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 79 IMKLRESIG-IVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp HHHHHHSEE-EECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred HHHHhCcEE-EEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHH
Confidence 234566 9999752 122 24566788899999999999999999999999999
Q ss_pred C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+ .+|++|||||||+|+|+.....+.+.+ ..++++.|.|||++||+ .++..+||++++|++|++++.+++++
T Consensus 158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l-~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~ 230 (275)
T 3gfo_A 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLL-VEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 230 (275)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHH-HHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHH-HHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9 999999999997777776666555544 66662249999999999 78888999999999999999998754
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6.5e-44 Score=299.57 Aligned_cols=179 Identities=15% Similarity=0.131 Sum_probs=143.9
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------- 60 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------- 60 (185)
++.+++++++..|-. ..+...+|+||||++++|++++|+||||||||||+|+| |.|.
T Consensus 22 ~~mi~v~~ls~~y~~-~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 22 KHMIKLSNITKVFHQ-GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp -CCEEEEEEEEEEEC-SSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CceEEEEeEEEEeCC-CCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 345677777655522 11235699999999999999999999999999999999 3221
Q ss_pred --HHHhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297 61 --FLAQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 61 --~~~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
++.++| |+||++..++ .+.++++.+++.+..++++++||||||||++|||++
T Consensus 101 ~~~r~~Ig-~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 101 TKARRQIG-MIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp HHHHTTEE-EECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHhCcEE-EEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh
Confidence 234566 9999874332 245678889999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|++|||||||+|+|+.....+.+.+ +.++++.|.|||++||+ ..+.++|||+++|++|++++.|++++
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL-~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELL-KDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHH-HHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999997777776666665544 67765469999999999 77888999999999999999987654
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.2e-44 Score=302.01 Aligned_cols=173 Identities=12% Similarity=0.139 Sum_probs=142.0
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH---------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------------- 61 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------------- 61 (185)
.+++++++..| +...+++|+||++++||+++|+||||||||||||+| |.|.+
T Consensus 4 ~l~i~~ls~~y-----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~ 78 (359)
T 3fvq_A 4 ALHIGHLSKSF-----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78 (359)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGG
T ss_pred EEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchh
Confidence 57788877665 346799999999999999999999999999999999 33332
Q ss_pred HHhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCC
Q psy5297 62 LAQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 62 ~~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p 116 (185)
...+| |+||++..++ .++++++.+++.+..++++.+||||||||++|||++ .+|
T Consensus 79 ~r~ig-~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P 157 (359)
T 3fvq_A 79 ERRLG-YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDP 157 (359)
T ss_dssp GSCCE-EECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hCCEE-EEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 12355 9999874332 245678889999999999999999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++||||||+|+|+.....+...+ ..+.++.|.|+|++||| .++..+|||+++|++|+++..+++++
T Consensus 158 ~lLLLDEPts~LD~~~r~~l~~~l-~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~e 225 (359)
T 3fvq_A 158 ELILLDEPFSALDEQLRRQIREDM-IAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHE 225 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHH-HHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHH
Confidence 999999997776666555555444 34433369999999999 88889999999999999999998754
No 4
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=9.7e-44 Score=287.37 Aligned_cols=176 Identities=14% Similarity=0.100 Sum_probs=140.4
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------ 60 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------ 60 (185)
|.++.+++++++..| +++.+++|+||++++|++++|+||||||||||+|+| |.|.
T Consensus 2 m~~~~l~i~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~ 76 (262)
T 1b0u_A 2 MSENKLHVIDLHKRY-----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDK 76 (262)
T ss_dssp ---CCEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECT
T ss_pred CCCceEEEeeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccc
Confidence 445567888877655 346799999999999999999999999999999999 3221
Q ss_pred --------------HHHhhCceecCCCCCc---ch----------------------hhHHHhhcCcccc-cccCcCccH
Q psy5297 61 --------------FLAQIGCFVPCDSATI---SV----------------------VDQIFTRVGAADS-QYRGISTFM 100 (185)
Q Consensus 61 --------------~~~~~g~~v~~~~~~~---~~----------------------~~~~l~~~~l~~~-~~~~~~~lS 100 (185)
+..+++ |+||++..+ ++ ++++++.+++.+. .++++++||
T Consensus 77 ~~~~~~~~~~~~~~~~~~i~-~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 155 (262)
T 1b0u_A 77 DGQLKVADKNQLRLLRTRLT-MVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLS 155 (262)
T ss_dssp TSSEEESCHHHHHHHHHHEE-EECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSC
T ss_pred cccccccChhhHHHHhcceE-EEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCC
Confidence 233466 999986322 21 3346777888888 899999999
Q ss_pred HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEE
Q psy5297 101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESK 178 (185)
Q Consensus 101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~ 178 (185)
+|||||++|||++ .+|+++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++..+||++++|++|+++.
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l-~~l~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIM-QQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHH-HHHHH-TTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999 999999999997777766655555544 66666 48999999999 77788999999999999998
Q ss_pred EeccCC
Q psy5297 179 YLYHTN 184 (185)
Q Consensus 179 ~~~~~~ 184 (185)
.+++++
T Consensus 234 ~g~~~~ 239 (262)
T 1b0u_A 234 EGDPEQ 239 (262)
T ss_dssp EECHHH
T ss_pred eCCHHH
Confidence 887643
No 5
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=6.8e-44 Score=284.08 Aligned_cols=177 Identities=14% Similarity=0.149 Sum_probs=136.1
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH----------------
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF---------------- 61 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~---------------- 61 (185)
++++|+...|-.. .....+++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 2 l~~~~l~~~y~~~-~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 2 VKLKNVTKTYKMG-EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEEEEeCCC-CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 5666666544210 1124699999999999999999999999999999999 33211
Q ss_pred -HHhhCceecCCCCCc---ch------------------------hhHHHhhcCcccc-cccCcCccHHHHHHHHHHHHh
Q psy5297 62 -LAQIGCFVPCDSATI---SV------------------------VDQIFTRVGAADS-QYRGISTFMMEMKETATVIKK 112 (185)
Q Consensus 62 -~~~~g~~v~~~~~~~---~~------------------------~~~~l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~ 112 (185)
..+++ |+||++..+ ++ +.++++.+++.+. .++++++||+|||||++|||+
T Consensus 81 ~~~~i~-~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra 159 (235)
T 3tif_A 81 RRDKIG-FVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (235)
T ss_dssp HHHHEE-EECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred hhccEE-EEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 12467 999987332 22 2345666777765 489999999999999999999
Q ss_pred C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
+ .+|+++||||||+|+|+.....+...+ ..++++.|.|||++||+.++.++||++++|++|+++..++.+++
T Consensus 160 l~~~p~llllDEPts~LD~~~~~~i~~~l-~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 160 LANNPPIILADQPTWALDSKTGEKIMQLL-KKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHH-HHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 9 999999999997777766655555544 66655358999999999557789999999999999999887653
No 6
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.8e-43 Score=285.27 Aligned_cols=174 Identities=14% Similarity=0.105 Sum_probs=140.4
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HH
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FL 62 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~ 62 (185)
+.+++++++..| +.+.+++|+||++++|++++|+||||||||||+|+| |.|. +.
T Consensus 10 ~~l~~~~l~~~~-----~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 84 (266)
T 4g1u_C 10 ALLEASHLHYHV-----QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALA 84 (266)
T ss_dssp CEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHH
T ss_pred ceEEEEeEEEEe-----CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHh
Confidence 356666665544 347899999999999999999999999999999999 3332 22
Q ss_pred HhhCceecCCCCC---cc-------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C-----
Q psy5297 63 AQIGCFVPCDSAT---IS-------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T----- 114 (185)
Q Consensus 63 ~~~g~~v~~~~~~---~~-------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~----- 114 (185)
..++ |+||.+.. ++ .++++++.+++.+..++++++||+|||||++|||++ .
T Consensus 85 ~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~ 163 (266)
T 4g1u_C 85 RTRA-VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQ 163 (266)
T ss_dssp HHEE-EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSS
T ss_pred heEE-EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 3455 99997632 22 245667888998889999999999999999999999 8
Q ss_pred -CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 -ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 -~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|++|||||||+|+|+.....+.+.+ +.++++.+.|||++||| .++..+||++++|++|++++.+++++
T Consensus 164 ~~p~lLllDEPts~LD~~~~~~i~~~l-~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~ 234 (266)
T 4g1u_C 164 PTPRWLFLDEPTSALDLYHQQHTLRLL-RQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEE 234 (266)
T ss_dssp CCCEEEEECCCCSSCCHHHHHHHHHHH-HHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHH-HHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999997777776666555544 66665346799999999 77888999999999999999988754
No 7
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=4.2e-44 Score=302.27 Aligned_cols=173 Identities=19% Similarity=0.164 Sum_probs=143.2
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-----------Hhh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL-----------AQI 65 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~-----------~~~ 65 (185)
.+++++++..| +...+++|+||++++||+++|+||||||||||||+| |.|.+. ..+
T Consensus 3 ~l~~~~l~~~y-----g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAW-----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77 (381)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCE
T ss_pred EEEEEeEEEEE-----CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCE
Confidence 47788887666 346799999999999999999999999999999999 444331 235
Q ss_pred CceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297 66 GCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI 120 (185)
Q Consensus 66 g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll 120 (185)
| |+||++..++ .++++++.+++.+..++++.+||||||||++|||++ .+|+++|
T Consensus 78 g-~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLL 156 (381)
T 3rlf_A 78 G-MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 156 (381)
T ss_dssp E-EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred E-EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEE
Confidence 6 9999874433 245677889999999999999999999999999999 9999999
Q ss_pred EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|||||+++|+.....+...+ +.+.++.|.|+|++||| .++..+|||+++|++|+++..+++++
T Consensus 157 LDEPts~LD~~~~~~l~~~l-~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 157 LDEPLSNLDAALRVQMRIEI-SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp EESTTTTSCHHHHHHHHHHH-HHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred EECCCcCCCHHHHHHHHHHH-HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99996666665555555544 66655459999999999 88899999999999999999998754
No 8
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.5e-43 Score=278.82 Aligned_cols=176 Identities=14% Similarity=0.085 Sum_probs=140.0
Q ss_pred CCCceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------
Q psy5297 1 MGTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF----------- 61 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~----------- 61 (185)
|.++.++++++...| +++.+++|+||++++|++++|+||||||||||+|+| |.|.+
T Consensus 2 ~~~~~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 76 (240)
T 1ji0_A 2 VSDIVLEVQSLHVYY-----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76 (240)
T ss_dssp CCSEEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred CCCceEEEEeEEEEE-----CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHH
Confidence 455678888877655 236799999999999999999999999999999999 33211
Q ss_pred ---HHhhCceecCCCCCc---ch--------------------hhHHHhhc-CcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297 62 ---LAQIGCFVPCDSATI---SV--------------------VDQIFTRV-GAADSQYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 62 ---~~~~g~~v~~~~~~~---~~--------------------~~~~l~~~-~l~~~~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
...++ |+||++..+ ++ ++++++.+ ++.+..++++++||+|||||++|||++
T Consensus 77 ~~~~~~i~-~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~ 155 (240)
T 1ji0_A 77 VINRMGIA-LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp HHHHTTEE-EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred HHHhCCEE-EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 12356 999976322 21 23455666 487788999999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|+++||||||+|+|+.....+.+.+ +.+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l-~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 225 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVI-QKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHH-HHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999997777776655555544 66665 58999999999 68889999999999999998887543
No 9
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.3e-42 Score=280.90 Aligned_cols=172 Identities=14% Similarity=0.127 Sum_probs=138.2
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH---------------H
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV---------------F 61 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~---------------~ 61 (185)
.++++|+...| +++.+++|+||++++|++++|+||||||||||+|+| |.|. +
T Consensus 24 ~l~i~~l~~~y-----~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 98 (263)
T 2olj_A 24 MIDVHQLKKSF-----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98 (263)
T ss_dssp SEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHH
T ss_pred eEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHH
Confidence 36666665444 346799999999999999999999999999999999 3321 2
Q ss_pred HHhhCceecCCCCCc---c----------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 62 LAQIGCFVPCDSATI---S----------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 62 ~~~~g~~v~~~~~~~---~----------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
..+++ |+||++..+ + .++++++.+++.+..++++++||+|||||++||+++ .+
T Consensus 99 ~~~i~-~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~ 177 (263)
T 2olj_A 99 REEVG-MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAME 177 (263)
T ss_dssp HHHEE-EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hCcEE-EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCC
Confidence 34466 999986322 2 133567778888889999999999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++||||||+|+|+.....+.+.+ +.+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus 178 p~lllLDEPts~LD~~~~~~~~~~l-~~l~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
T 2olj_A 178 PKIMLFDEPTSALDPEMVGEVLSVM-KQLAN-EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPED 245 (263)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHH-HHHHH-TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHH-HHHHh-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999997777766655555544 66666 49999999999 77888999999999999998887653
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.6e-42 Score=272.30 Aligned_cols=169 Identities=15% Similarity=0.127 Sum_probs=136.2
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV---------------- 60 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~---------------- 60 (185)
.+++++++..| +.+.+++|+||++++|++++|+||||||||||+|+| |.|.
T Consensus 4 ~l~~~~l~~~y-----~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (224)
T 2pcj_A 4 ILRAENIKKVI-----RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78 (224)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHH
T ss_pred EEEEEeEEEEE-----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHH
Confidence 57777776555 236799999999999999999999999999999999 2221
Q ss_pred HH-HhhCceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 61 FL-AQIGCFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 61 ~~-~~~g~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
++ .+++ |+||++..+ + .+.++++.+++.+..++++++||+|||||++||+++ .
T Consensus 79 ~~~~~i~-~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~ 157 (224)
T 2pcj_A 79 LRNRKLG-FVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALAN 157 (224)
T ss_dssp HHHHHEE-EECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTT
T ss_pred HHhCcEE-EEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 12 3466 999986322 2 134567788998889999999999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEec
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLY 181 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~ 181 (185)
+|+++||||||+|+|+.....+.+. +..+++ .|.|||++||+.+...+||++++|++|+++..++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~~~~~-l~~l~~-~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 158 EPILLFADEPTGNLDSANTKRVMDI-FLKINE-GGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHH-HHHHHH-TTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHH-CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999777766665555554 466666 3899999999944448999999999999998876
No 11
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-42 Score=279.98 Aligned_cols=172 Identities=20% Similarity=0.265 Sum_probs=138.1
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH------------HHHh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV------------FLAQ 64 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~------------~~~~ 64 (185)
.+++++++..| +.+.+++|+||++++|++++|+||||||||||+|+| |.|. +..+
T Consensus 15 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 89 (256)
T 1vpl_A 15 AVVVKDLRKRI-----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89 (256)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTT
T ss_pred eEEEEEEEEEE-----CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhc
Confidence 45566665444 346799999999999999999999999999999999 3322 2334
Q ss_pred hCceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEE
Q psy5297 65 IGCFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLV 119 (185)
Q Consensus 65 ~g~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ll 119 (185)
++ |+||++..+ + .++++++.+++.+..++++++||+|||||++||+++ .+|+++
T Consensus 90 i~-~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 168 (256)
T 1vpl_A 90 IS-YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLA 168 (256)
T ss_dssp EE-EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EE-EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 56 999986322 2 134567788998889999999999999999999999 999999
Q ss_pred EEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 120 IIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 120 llDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus 169 lLDEPts~LD~~~~~~l~~~l-~~l~~-~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 232 (256)
T 1vpl_A 169 ILDEPTSGLDVLNAREVRKIL-KQASQ-EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEE 232 (256)
T ss_dssp EEESTTTTCCHHHHHHHHHHH-HHHHH-TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHH
T ss_pred EEeCCccccCHHHHHHHHHHH-HHHHh-CCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHH
Confidence 999997777776655555544 66665 58999999999 77778999999999999998887543
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=4.2e-43 Score=294.66 Aligned_cols=173 Identities=16% Similarity=0.172 Sum_probs=141.0
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQI 65 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~ 65 (185)
.+++++++..| +++.+++|+||++++|++++|+||||||||||||+| |.|.+ ..++
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYF-----GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREV 77 (359)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTE
T ss_pred EEEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcE
Confidence 46777776655 346799999999999999999999999999999999 33332 1245
Q ss_pred CceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297 66 GCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI 120 (185)
Q Consensus 66 g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll 120 (185)
+ |+||++..++ .++++++.+++.+..++++++||||||||++|||++ .+|+++|
T Consensus 78 g-~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLL 156 (359)
T 2yyz_A 78 G-MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLL 156 (359)
T ss_dssp E-EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred E-EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 6 9999873332 245677888999999999999999999999999999 9999999
Q ss_pred EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|||||+++|+.....+...+ +.+.++.|.|+|++||| .++..+||++++|++|+++..+++++
T Consensus 157 LDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~ 220 (359)
T 2yyz_A 157 FDEPLSNLDANLRMIMRAEI-KHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDE 220 (359)
T ss_dssp EESTTTTSCHHHHHHHHHHH-HHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred EECCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99997776666555555544 56654358999999999 78889999999999999999887654
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.2e-43 Score=294.37 Aligned_cols=173 Identities=17% Similarity=0.163 Sum_probs=140.4
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQI 65 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~ 65 (185)
.+++++++..| +.+.+++|+||++++|++++|+||||||||||||+| |.|.+ ..++
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKF-----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNV 77 (362)
T ss_dssp CEEEEEEEEES-----SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTE
T ss_pred EEEEEeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcE
Confidence 46777776655 235799999999999999999999999999999999 33332 1245
Q ss_pred CceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEE
Q psy5297 66 GCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVI 120 (185)
Q Consensus 66 g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~lll 120 (185)
+ |+||++..++ .++++++.+++.+..++++++||||||||++|||++ .+|+++|
T Consensus 78 g-~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 156 (362)
T 2it1_A 78 G-LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLL 156 (362)
T ss_dssp E-EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred E-EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 6 9999874332 134567888999999999999999999999999999 9999999
Q ss_pred EeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 121 IDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 121 lDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||||++++|+.....+...+ +.+.++.|.|+|++||| .++..+||++++|++|+++..+++++
T Consensus 157 LDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 220 (362)
T 2it1_A 157 LDEPLSNLDALLRLEVRAEL-KRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDE 220 (362)
T ss_dssp EESGGGGSCHHHHHHHHHHH-HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred EECccccCCHHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99996666665555555544 66654358999999999 78889999999999999999887654
No 14
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.6e-43 Score=293.87 Aligned_cols=175 Identities=15% Similarity=0.113 Sum_probs=139.8
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHh
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQ 64 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~ 64 (185)
+.++++++...|- +++.+++|+||++++|++++|+||||||||||||+| |.|.+ ..+
T Consensus 13 ~~l~~~~l~~~y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN 88 (355)
T ss_dssp EEEEEEEEEECCT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSS
T ss_pred ceEEEEEEEEEEc----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCc
Confidence 3466666655441 234699999999999999999999999999999999 33332 123
Q ss_pred hCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEE
Q psy5297 65 IGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLV 119 (185)
Q Consensus 65 ~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ll 119 (185)
++ |+||++..++ .++++++.+++.+..++++++||||||||++|||++ .+|+++
T Consensus 89 ig-~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 167 (355)
T 1z47_A 89 VG-LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVL 167 (355)
T ss_dssp EE-EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EE-EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 55 9999863332 234567888999999999999999999999999999 999999
Q ss_pred EEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 120 IIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 120 llDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||||||+++|+.....+...+ +.+.++.|.|+|++||| .++..+||++++|++|+++..+++++
T Consensus 168 LLDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 232 (355)
T 1z47_A 168 LFDEPFAAIDTQIRRELRTFV-RQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEE 232 (355)
T ss_dssp EEESTTCCSSHHHHHHHHHHH-HHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred EEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999997776665555555544 56654358999999999 88889999999999999999887654
No 15
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=7e-42 Score=275.71 Aligned_cols=172 Identities=15% Similarity=0.058 Sum_probs=137.9
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------HH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV--------------FL 62 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~--------------~~ 62 (185)
.++++++...| +++.+++|+||++++|++++|+||||||||||+|+| |.|. +.
T Consensus 7 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (257)
T 1g6h_A 7 ILRTENIVKYF-----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81 (257)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEeeeEEEE-----CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 46777776544 346799999999999999999999999999999999 3221 12
Q ss_pred HhhCceecCCCCCc---c----------------------------------hhhHHHhhcCcccccccCcCccHHHHHH
Q psy5297 63 AQIGCFVPCDSATI---S----------------------------------VVDQIFTRVGAADSQYRGISTFMMEMKE 105 (185)
Q Consensus 63 ~~~g~~v~~~~~~~---~----------------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q 105 (185)
.+++ |+||++..+ + .++++++.+++.+..++++++||+||||
T Consensus 82 ~~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQ 160 (257)
T 1g6h_A 82 YGIV-RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMK 160 (257)
T ss_dssp HTEE-ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred CCEE-EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHH
Confidence 3456 898875211 1 1234566778888889999999999999
Q ss_pred HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
|++||+++ .+|+++||||||+|+|+.....+.+.+ +.+++ .|.|||++||+ .++..+||++++|++|+++..++++
T Consensus 161 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l-~~l~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 238 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV-LELKA-KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238 (257)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHH-HHHHH-TTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESH
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHH
Confidence 99999999 999999999997777776666555544 66666 49999999999 7788899999999999999888765
Q ss_pred C
Q psy5297 184 N 184 (185)
Q Consensus 184 ~ 184 (185)
+
T Consensus 239 ~ 239 (257)
T 1g6h_A 239 E 239 (257)
T ss_dssp H
T ss_pred H
Confidence 4
No 16
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.3e-42 Score=290.72 Aligned_cols=171 Identities=13% Similarity=0.095 Sum_probs=139.1
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhC
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIG 66 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g 66 (185)
+++++++..| +.+ +++|+||++++|++++|+||||||||||||+| |.|.+ ..+++
T Consensus 2 l~~~~l~~~y-----~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKW-----KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75 (348)
T ss_dssp EEEEEEEEEC-----SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCE
T ss_pred EEEEEEEEEE-----CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEE
Confidence 5566665544 235 99999999999999999999999999999999 33322 34566
Q ss_pred ceecCCCCCcc---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCC
Q psy5297 67 CFVPCDSATIS---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDEL 124 (185)
Q Consensus 67 ~~v~~~~~~~~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP 124 (185)
|+||++..++ .++++++.+++.+..++++++||+|||||++|||++ .+|+++|||||
T Consensus 76 -~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP 154 (348)
T 3d31_A 76 -FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP 154 (348)
T ss_dssp -EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred -EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 9999874332 134567888999999999999999999999999999 99999999999
Q ss_pred CCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 125 GRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 125 ~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++|+.....+...+ +.+.++.|.|+|++||| .++..+||++++|++|+++..+++++
T Consensus 155 ~s~LD~~~~~~l~~~l-~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~ 214 (348)
T 3d31_A 155 LSALDPRTQENAREML-SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEE 214 (348)
T ss_dssp STTSCHHHHHHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHH
T ss_pred cccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 7776666655555544 66655469999999999 78889999999999999999887654
No 17
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1e-42 Score=280.05 Aligned_cols=172 Identities=17% Similarity=0.195 Sum_probs=137.1
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCc
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATI 76 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~ 76 (185)
.+++++++..| . +++.+++|+||++++|++++|+||||||||||+|+| |.|.+...++ |+||++..+
T Consensus 4 ~l~i~~l~~~y---~-~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~-~v~q~~~~~ 78 (253)
T 2nq2_C 4 ALSVENLGFYY---Q-AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIG-FVPQFFSSP 78 (253)
T ss_dssp EEEEEEEEEEE---T-TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEE-EECSCCCCS
T ss_pred eEEEeeEEEEe---C-CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEE-EEcCCCccC
Confidence 47777776544 1 036799999999999999999999999999999999 4444334456 899876221
Q ss_pred ---ch-------------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCC
Q psy5297 77 ---SV-------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRG 127 (185)
Q Consensus 77 ---~~-------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g 127 (185)
++ ++++++.+++.+..++++++||+|||||++|||++ .+|+++||||||+|
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~ 158 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSA 158 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTT
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 11 23456778888888999999999999999999999 99999999999777
Q ss_pred CCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccC
Q psy5297 128 TSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 128 ~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+|+.....+.+.+ ..++++.|.|||++||+ .++..+||++++|++|+ +..++++
T Consensus 159 LD~~~~~~l~~~l-~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~ 213 (253)
T 2nq2_C 159 LDLANQDIVLSLL-IDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETR 213 (253)
T ss_dssp SCHHHHHHHHHHH-HHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHH
T ss_pred CCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHH
Confidence 7666655555544 66665348999999999 77789999999999999 8877654
No 18
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=8.9e-43 Score=292.31 Aligned_cols=173 Identities=14% Similarity=0.103 Sum_probs=141.7
Q ss_pred eEEEcccCCceeeecCCcee--eeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSY--IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF------------- 61 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~--il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~------------- 61 (185)
.+++++++..| +++. +++|+||++++|++++|+||||||||||||+| |.|.+
T Consensus 3 ~l~i~~l~~~y-----~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~ 77 (353)
T 1oxx_K 3 RIIVKNVSKVF-----KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77 (353)
T ss_dssp CEEEEEEEEEE-----GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESS
T ss_pred EEEEEeEEEEE-----CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccC
Confidence 46777776655 2245 99999999999999999999999999999999 33322
Q ss_pred ---HHhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-
Q psy5297 62 ---LAQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC- 113 (185)
Q Consensus 62 ---~~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l- 113 (185)
..+++ |+||++..++ .++++++.+++.+..++++++||||||||++|||++
T Consensus 78 ~~~~r~ig-~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~ 156 (353)
T 1oxx_K 78 PPEDRKIG-MVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALV 156 (353)
T ss_dssp CGGGSCEE-EEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred ChhhCCEE-EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 12345 9999863322 244677888999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|+++||||||+++|+.....+...+ +.+.++.|.|+|++||| .++..+||++++|++|+++..+++++
T Consensus 157 ~~P~lLLLDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~ 227 (353)
T 1oxx_K 157 KDPSLLLLDEPFSNLDARMRDSARALV-KEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED 227 (353)
T ss_dssp TCCSEEEEESTTTTSCGGGHHHHHHHH-HHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999998888777766666654 66654358999999999 88889999999999999999887654
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=8e-43 Score=294.16 Aligned_cols=172 Identities=18% Similarity=0.147 Sum_probs=137.2
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-----------HHhhC
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-----------LAQIG 66 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-----------~~~~g 66 (185)
+++++++..| +.+.+++|+||++++|++++|+||||||||||||+| |.|.+ ..+++
T Consensus 12 l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 86 (372)
T 1v43_A 12 VKLENLTKRF-----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86 (372)
T ss_dssp EEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEE
T ss_pred EEEEEEEEEE-----CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEE
Confidence 5666665544 336799999999999999999999999999999999 33322 23456
Q ss_pred ceecCCCCCc---c---------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEE
Q psy5297 67 CFVPCDSATI---S---------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVII 121 (185)
Q Consensus 67 ~~v~~~~~~~---~---------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llll 121 (185)
|+||++..+ + .++++++.+++.+..++++++||||||||++|||++ .+|+++||
T Consensus 87 -~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 165 (372)
T 1v43_A 87 -MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 165 (372)
T ss_dssp -EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred -EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999986322 2 245677889999999999999999999999999999 99999999
Q ss_pred eCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 122 DEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|||++++|+.....+...+ +.+.++.|.|+|++||| .++..+||++++|++|+++..+++++
T Consensus 166 DEP~s~LD~~~r~~l~~~l-~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 228 (372)
T 1v43_A 166 DEPLSNLDAKLRVAMRAEI-KKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTE 228 (372)
T ss_dssp ESTTTTSCHHHHHHHHHHH-HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred cCCCccCCHHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9997776666555555544 56654358999999999 78889999999999999999887654
No 20
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.5e-42 Score=292.71 Aligned_cols=173 Identities=15% Similarity=0.127 Sum_probs=140.4
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH--------------
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL-------------- 62 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~-------------- 62 (185)
.+++++++..| +.+.+++|+||++++|++++|+||||||||||||+| |.|.+.
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~ 77 (372)
T 1g29_1 3 GVRLVDVWKVF-----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP 77 (372)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECC
T ss_pred EEEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCC
Confidence 46777776655 336799999999999999999999999999999999 333221
Q ss_pred ---HhhCceecCCCCCcc------------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 63 ---AQIGCFVPCDSATIS------------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 63 ---~~~g~~v~~~~~~~~------------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
.+++ |+||++..++ .++++++.+++.+..++++++||||||||++|||++ .
T Consensus 78 ~~~r~ig-~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 156 (372)
T 1g29_1 78 PKDRDIA-MVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR 156 (372)
T ss_dssp GGGSSEE-EECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT
T ss_pred HhHCCEE-EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 2345 9999874332 134567888999999999999999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+++||||||+++|+.....+...+ +.+.++.|.|+|++||| .++..+||++++|++|+++..+++++
T Consensus 157 ~P~lLLLDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 157 KPQVFLMDEPLSNLDAKLRVRMRAEL-KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp CCSEEEEECTTTTSCHHHHHHHHHHH-HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEECCCCccCCHHHHHHHHHHH-HHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999997776665555555544 56654358999999999 88889999999999999999887654
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-42 Score=276.86 Aligned_cols=169 Identities=20% Similarity=0.223 Sum_probs=134.0
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHH-----------HhhC
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFL-----------AQIG 66 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~-----------~~~g 66 (185)
+++++++..| +. +++|+||++++ ++++|+||||||||||+|+| |.|.+. .+++
T Consensus 2 l~~~~l~~~y-----~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRL-----GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIG 73 (240)
T ss_dssp CEEEEEEEEE-----TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCB
T ss_pred EEEEEEEEEe-----CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEE
Confidence 4555655444 11 59999999999 99999999999999999999 333321 2345
Q ss_pred ceecCCCCCc---c-------------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeC
Q psy5297 67 CFVPCDSATI---S-------------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDE 123 (185)
Q Consensus 67 ~~v~~~~~~~---~-------------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDE 123 (185)
|+||++..+ + .++++++.+++.+..++++++||+|||||++|||++ .+|+++||||
T Consensus 74 -~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 152 (240)
T 2onk_A 74 -FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDE 152 (240)
T ss_dssp -CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES
T ss_pred -EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 999976322 2 134567888998889999999999999999999999 9999999999
Q ss_pred CCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 124 LGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 124 P~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||+|+|+.....+.+.+ ..++++.|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus 153 Pts~LD~~~~~~~~~~l-~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 213 (240)
T 2onk_A 153 PLSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKE 213 (240)
T ss_dssp TTSSCCHHHHHHHHHHH-HHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 97777766655555544 56654348999999999 77889999999999999998887653
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.7e-41 Score=276.55 Aligned_cols=174 Identities=18% Similarity=0.202 Sum_probs=137.1
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH--------------
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------- 60 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------- 60 (185)
++.++++++...| +++.+++|+||++++|++++|+||||||||||+|+| |.|.
T Consensus 19 ~~~l~~~~l~~~y-----~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 93 (279)
T 2ihy_A 19 HMLIQLDQIGRMK-----QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAE 93 (279)
T ss_dssp CEEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHH
T ss_pred CceEEEEeEEEEE-----CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHH
Confidence 3456666665544 336799999999999999999999999999999999 3221
Q ss_pred -HHHhhCceecCCCC---Cc--ch-------------------------hhHHHhhcCcccccccCcCccHHHHHHHHHH
Q psy5297 61 -FLAQIGCFVPCDSA---TI--SV-------------------------VDQIFTRVGAADSQYRGISTFMMEMKETATV 109 (185)
Q Consensus 61 -~~~~~g~~v~~~~~---~~--~~-------------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~i 109 (185)
+..+++ |+||++. .. ++ +.++++.+++.+..++++++||+|||||++|
T Consensus 94 ~~~~~i~-~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 94 TVRQHIG-FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp HHHTTEE-EECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred HHcCcEE-EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 123455 8888641 11 21 2345677888888899999999999999999
Q ss_pred HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeE--EEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFT--LFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~v--ii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
||++ .+|+++||||||+|+|+.....+.+.+ ..++++ |.|| |++||+ .++..+||++++|++|+++..+++++
T Consensus 173 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l-~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 249 (279)
T 2ihy_A 173 ARALMGQPQVLILDEPAAGLDFIARESLLSIL-DSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVED 249 (279)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHH-HHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHH
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHH-HHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999 999999999997777766655555544 666653 8899 999999 77788999999999999998887643
No 23
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-40 Score=269.92 Aligned_cols=173 Identities=14% Similarity=0.089 Sum_probs=137.3
Q ss_pred EEEcccCCceeeecCCc---eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH----------HHHh
Q psy5297 6 LVLNQCRHPIVELQGGV---SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV----------FLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~---~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~----------~~~~ 64 (185)
+++++++..| ..+. +.+++|+||++++|++++|+||||||||||+|+| |.|. +..+
T Consensus 3 l~~~~l~~~y---~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIF---HRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRN 79 (266)
T ss_dssp EEEEEEEEEE---STTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGG
T ss_pred EEEEEEEEEe---cCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhh
Confidence 6677776544 2112 5799999999999999999999999999999999 3332 2334
Q ss_pred hCceecCCC-C---Ccc--------------------hhhHHHhhcCcc--cccccCcCccHHHHHHHHHHHHhC-CCCe
Q psy5297 65 IGCFVPCDS-A---TIS--------------------VVDQIFTRVGAA--DSQYRGISTFMMEMKETATVIKKC-TENS 117 (185)
Q Consensus 65 ~g~~v~~~~-~---~~~--------------------~~~~~l~~~~l~--~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ 117 (185)
++ |+||++ . ..+ .++++++.+++. +..++++++||+|||||++||+++ .+|+
T Consensus 80 i~-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 158 (266)
T 2yz2_A 80 IG-IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPD 158 (266)
T ss_dssp EE-EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EE-EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 56 999974 1 111 134567888998 888999999999999999999999 9999
Q ss_pred EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 118 LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 118 llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
++||||||+|+|+.....+.+.+ ..+++ .|.|||++||+ .++..+||++++|++|+++..+++++
T Consensus 159 lllLDEPts~LD~~~~~~l~~~l-~~l~~-~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 224 (266)
T 2yz2_A 159 ILILDEPLVGLDREGKTDLLRIV-EKWKT-LGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRME 224 (266)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHH-HHHHH-TTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHH
T ss_pred EEEEcCccccCCHHHHHHHHHHH-HHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999997777766655555544 66665 38999999999 77788999999999999998887543
No 24
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.9e-40 Score=269.26 Aligned_cols=175 Identities=13% Similarity=0.086 Sum_probs=129.4
Q ss_pred eEEEcccCCceeeecC-CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHH
Q psy5297 5 TLVLNQCRHPIVELQG-GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFL 62 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~-~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~ 62 (185)
.++++++...| .+ +.+.+++|+||++++|++++|+||||||||||+|+| |.| .+.
T Consensus 16 ~l~~~~l~~~y---~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 92 (271)
T 2ixe_A 16 LVKFQDVSFAY---PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92 (271)
T ss_dssp CEEEEEEEECC---TTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred eEEEEEEEEEe---CCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHh
Confidence 35666665443 11 125799999999999999999999999999999999 322 123
Q ss_pred HhhCceecCCCCCc--chhhH-------------------------HHhhc--CcccccccCcCccHHHHHHHHHHHHhC
Q psy5297 63 AQIGCFVPCDSATI--SVVDQ-------------------------IFTRV--GAADSQYRGISTFMMEMKETATVIKKC 113 (185)
Q Consensus 63 ~~~g~~v~~~~~~~--~~~~~-------------------------~l~~~--~l~~~~~~~~~~lS~g~~q~~~ia~~l 113 (185)
.+++ |+||++..+ ++.++ +++.+ ++....++++.+||+|||||++|||++
T Consensus 93 ~~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL 171 (271)
T 2ixe_A 93 TQVA-AVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL 171 (271)
T ss_dssp HHEE-EECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred ccEE-EEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHH
Confidence 4566 999986322 22222 22233 455566788999999999999999999
Q ss_pred -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|++|||||||+|+|+.....+.+.+ ..+.++.|.|||++||+.+....||++++|++|+++..+++++
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l-~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~ 242 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLL-YESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQ 242 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHH-HHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHH-HHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999997776665544444433 5554334899999999944445699999999999998887643
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.1e-40 Score=266.04 Aligned_cols=158 Identities=9% Similarity=0.043 Sum_probs=130.0
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-H------HHH-------------HHHhhCceecCCCCCc---c---
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-G------VSV-------------FLAQIGCFVPCDSATI---S--- 77 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G------~i~-------------~~~~~g~~v~~~~~~~---~--- 77 (185)
.+++|+||++++|++++|+||||||||||+|+| | .|. +..+++ |+||++..+ +
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~e 92 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRA-YLSQQQTPPFATPVWH 92 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEE-EECSCCCCCTTCBHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEE-EECCCCccCCCCcHHH
Confidence 589999999999999999999999999999999 2 221 234466 999986322 2
Q ss_pred -------------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe-------EEEEeCCCCCCCcCChhHH
Q psy5297 78 -------------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS-------LVIIDELGRGTSTFDGFGM 136 (185)
Q Consensus 78 -------------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~-------llllDEP~~g~~~~d~~~~ 136 (185)
.+.++++.+++.+..++++.+||+|||||++||+++ .+|+ ++||||||+|+|+.....+
T Consensus 93 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l 172 (249)
T 2qi9_C 93 YLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 172 (249)
T ss_dssp HHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH
T ss_pred HHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH
Confidence 134567788998889999999999999999999999 9999 9999999777776665555
Q ss_pred HHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 137 ACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 137 ~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+.+ +.+++ .|.|||++||+ ..+..+||++++|++|+++..+++++
T Consensus 173 ~~~l-~~l~~-~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 219 (249)
T 2qi9_C 173 DKIL-SALSQ-QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 219 (249)
T ss_dssp HHHH-HHHHH-TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHH-HHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 5544 66665 48999999999 77779999999999999998887643
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=4.2e-40 Score=266.76 Aligned_cols=174 Identities=17% Similarity=0.149 Sum_probs=130.9
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH---------HHH-----------
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV---------SVF----------- 61 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~---------i~~----------- 61 (185)
.+.++++++...| +++.+++|+||++++|++++|+||||||||||+|+| |. |.+
T Consensus 18 ~~~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~ 92 (267)
T 2zu0_C 18 SHMLSIKDLHVSV-----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 92 (267)
T ss_dssp --CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHH
T ss_pred CceEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHH
Confidence 3456666665444 346799999999999999999999999999999999 32 111
Q ss_pred ---HHhhCceecCCCCCcc-------------------------------hhhHHHhhcCcc-cccccCcC-ccHHHHHH
Q psy5297 62 ---LAQIGCFVPCDSATIS-------------------------------VVDQIFTRVGAA-DSQYRGIS-TFMMEMKE 105 (185)
Q Consensus 62 ---~~~~g~~v~~~~~~~~-------------------------------~~~~~l~~~~l~-~~~~~~~~-~lS~g~~q 105 (185)
...++ |+||++..++ .++++++.+++. +..++++. +||+||||
T Consensus 93 ~~~~~~i~-~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~Q 171 (267)
T 2zu0_C 93 DRAGEGIF-MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKK 171 (267)
T ss_dssp HHHHHTEE-EECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHH
T ss_pred HHhhCCEE-EEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHH
Confidence 11245 8999863211 123456677885 46788887 59999999
Q ss_pred HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHh-hccccceeeeeEEEEecc
Q psy5297 106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALL-SRVIPTFRNVHESKYLYH 182 (185)
Q Consensus 106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~-~d~~~~l~~g~i~~~~~~ 182 (185)
|++|||++ .+|+++||||||+|+|+.....+.+.+ +.+++ .|.|||++||+ .++..+ ||++++|++|+++..+++
T Consensus 172 Rv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l-~~l~~-~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 172 RNDILQMAVLEPELCILDESDSGLDIDALKVVADGV-NSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHH-HTTCC-SSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHh-cCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 99999999 999999999996666655544444433 55544 48999999999 666665 899999999999998887
Q ss_pred CC
Q psy5297 183 TN 184 (185)
Q Consensus 183 ~~ 184 (185)
++
T Consensus 250 ~~ 251 (267)
T 2zu0_C 250 TL 251 (267)
T ss_dssp TH
T ss_pred HH
Confidence 64
No 27
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.7e-40 Score=264.06 Aligned_cols=171 Identities=13% Similarity=0.095 Sum_probs=128.3
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH----------HH------------H
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS----------VF------------L 62 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i----------~~------------~ 62 (185)
.++++++...| +++.+++|+||++++|++++|+||||||||||+|+|..+ .+ .
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~ 77 (250)
T 2d2e_A 3 QLEIRDLWASI-----DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77 (250)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHH
T ss_pred eEEEEeEEEEE-----CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHH
Confidence 46777776544 236799999999999999999999999999999999321 11 1
Q ss_pred -H-hhCceecCCCCCc---ch------------------------hhHHHhhcCc-ccccccCcCc-cHHHHHHHHHHHH
Q psy5297 63 -A-QIGCFVPCDSATI---SV------------------------VDQIFTRVGA-ADSQYRGIST-FMMEMKETATVIK 111 (185)
Q Consensus 63 -~-~~g~~v~~~~~~~---~~------------------------~~~~l~~~~l-~~~~~~~~~~-lS~g~~q~~~ia~ 111 (185)
. .++ |+||++..+ ++ +.++++.+++ .+..++++++ ||+|||||++|||
T Consensus 78 ~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAr 156 (250)
T 2d2e_A 78 ARKGLF-LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQ 156 (250)
T ss_dssp HHTTBC-CCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHH
T ss_pred HhCcEE-EeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 1 134 889876322 11 2345666788 4778899999 9999999999999
Q ss_pred hC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHh-hccccceeeeeEEEEeccC
Q psy5297 112 KC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALL-SRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 112 ~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~-~d~~~~l~~g~i~~~~~~~ 183 (185)
++ .+|+++||||||+|+|+.....+.+.+ +.+++ .|.|||++||+ .++..+ ||++++|++|+++..++++
T Consensus 157 aL~~~p~lllLDEPts~LD~~~~~~l~~~l-~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 157 LLVLEPTYAVLDETDSGLDIDALKVVARGV-NAMRG-PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHCCSEEEEECGGGTTCHHHHHHHHHHH-HHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHH-HHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99 999999999997776665555554433 56654 58999999999 667777 5999999999999888653
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.4e-40 Score=263.86 Aligned_cols=172 Identities=14% Similarity=0.113 Sum_probs=128.3
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~ 64 (185)
++++++...| .++.+.+++|+||++++|++++|+||||||||||+|+| |.| .+..+
T Consensus 8 ~~~~~l~~~y---~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 8 ITFRNIRFRY---KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEES---STTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred eeEEEEEEEe---CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 5566665433 11236799999999999999999999999999999999 322 12345
Q ss_pred hCceecCCCCCc--ch---------------hhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 65 IGCFVPCDSATI--SV---------------VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 65 ~g~~v~~~~~~~--~~---------------~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
++ |+||++..+ ++ +.++++.+++.+. .++++++||+|||||++|||++ .+
T Consensus 85 i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 85 VG-VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EE-EECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EE-EEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 66 999987322 22 2233444455433 3445689999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++||||||+|+|+.....+.+.+ ..+. .|.|||++||+.+....||++++|++|+++..+++++
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l-~~~~--~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 229 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNM-HKIC--KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKE 229 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHH-HHHH--TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHH-HHHc--CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999997777666655555544 5553 3899999999944445699999999999999887643
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-40 Score=265.38 Aligned_cols=170 Identities=18% Similarity=0.164 Sum_probs=131.6
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH-------------HHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF-------------LAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~-------------~~~ 64 (185)
++++++...| . +.+.+++|+||++++|++++|+||||||||||+|+| |.|.+ ..+
T Consensus 2 l~~~~l~~~y---~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T 1mv5_A 2 LSARHVDFAY---D-DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQ 77 (243)
T ss_dssp EEEEEEEECS---S-SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTT
T ss_pred EEEEEEEEEe---C-CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhh
Confidence 5666666544 1 235799999999999999999999999999999999 44433 123
Q ss_pred hCceecCCCCCc--ch----------------hhHHHhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-C
Q psy5297 65 IGCFVPCDSATI--SV----------------VDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 65 ~g~~v~~~~~~~--~~----------------~~~~l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
++ |+||++..+ ++ +.++++.+++.+.. ++++++||+|||||++|||++ .
T Consensus 78 i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 78 IG-FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp CC-EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EE-EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 55 999986322 21 23344455555443 345689999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+|+++||||||+|+|+.....+.+.+ ..++ .+.|||++||+.+....||++++|++|+++..++++
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l-~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~ 222 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKAL-DSLM--KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHN 222 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHH-HHHH--TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHH-HHhc--CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999998888777755 5665 389999999994444579999999999998777654
No 30
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.5e-41 Score=267.41 Aligned_cols=172 Identities=13% Similarity=0.097 Sum_probs=124.7
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCc
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATI 76 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~ 76 (185)
.++++++...| .++.+.+++|+||++++|++++|+||||||||||+|+| |.|.+.++++ |+||++..+
T Consensus 6 ~l~~~~l~~~y---~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~-~v~q~~~~~ 81 (229)
T 2pze_A 6 EVVMENVTAFW---EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS-FCSQFSWIM 81 (229)
T ss_dssp EEEEEEEEECS---STTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEE-EECSSCCCC
T ss_pred eEEEEEEEEEe---CCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEE-EEecCCccc
Confidence 46777776544 22346799999999999999999999999999999999 5555555667 999987332
Q ss_pred --chhhH--------------HHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCC
Q psy5297 77 --SVVDQ--------------IFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGT 128 (185)
Q Consensus 77 --~~~~~--------------~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~ 128 (185)
++.++ +++.+++.+. .++++.+||+|||||++|||++ .+|+++||||||+|+
T Consensus 82 ~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~L 161 (229)
T 2pze_A 82 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 161 (229)
T ss_dssp SBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTS
T ss_pred CCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCC
Confidence 32222 2223333322 2334589999999999999999 999999999995555
Q ss_pred CcCChhHHHHHHHHHH-Hh-cCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 129 STFDGFGMACSIAREL-AS-NRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 129 ~~~d~~~~~~~il~~l-~~-~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|.......+ +.+ .+ ..+.|||++||+.+....||++++|++|+++..+++++
T Consensus 162 ---D~~~~~~i~-~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 215 (229)
T 2pze_A 162 ---DVLTEKEIF-ESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 215 (229)
T ss_dssp ---CHHHHHHHH-HHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred ---CHHHHHHHH-HHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHH
Confidence 544443322 322 11 13789999999944445699999999999998887643
No 31
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.5e-39 Score=267.90 Aligned_cols=172 Identities=16% Similarity=0.178 Sum_probs=129.2
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~ 63 (185)
.++++++...|- +.+.+|+|+||++++|++++|+||||||||||+|+| |.| .++.
T Consensus 53 ~i~~~~vs~~y~----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~ 128 (306)
T 3nh6_A 53 RIEFENVHFSYA----DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRS 128 (306)
T ss_dssp CEEEEEEEEESS----TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHH
T ss_pred eEEEEEEEEEcC----CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhc
Confidence 366666654441 236799999999999999999999999999999999 333 2345
Q ss_pred hhCceecCCCCCcc--hhh---------------HHHhhcCc-----------ccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 64 QIGCFVPCDSATIS--VVD---------------QIFTRVGA-----------ADSQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 64 ~~g~~v~~~~~~~~--~~~---------------~~l~~~~l-----------~~~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
+++ |+||++..++ +.+ ++++..++ +....++..+||||||||++|||++ .
T Consensus 129 ~i~-~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 129 HIG-VVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp TEE-EECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred ceE-EEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 667 9999984432 222 22333333 2334566689999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|++|||||||+++|+.....+.+.+ ..+.+ +.|+|++||+......||++++|++|+++..|++++
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l-~~l~~--~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~e 274 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASL-AKVCA--NRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEA 274 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHH-HHHHT--TSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHH-HHHcC--CCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999997777666555554443 55543 689999999944444599999999999999998754
No 32
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=9.6e-41 Score=266.20 Aligned_cols=174 Identities=11% Similarity=0.106 Sum_probs=125.5
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCC-
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSAT- 75 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~- 75 (185)
.++++++...| .++.+.+++|+||++++|++++|+||||||||||+|+| |.|.+.++++ |+||++..
T Consensus 3 ~l~~~~l~~~y---~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~-~v~Q~~~~~ 78 (237)
T 2cbz_A 3 SITVRNATFTW---ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVA-YVPQQAWIQ 78 (237)
T ss_dssp CEEEEEEEEES---CTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEE-EECSSCCCC
T ss_pred eEEEEEEEEEe---CCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEE-EEcCCCcCC
Confidence 36777776544 21235799999999999999999999999999999999 5555555667 99998732
Q ss_pred -cchhhH--------------HHhhcCcc-----------cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCC
Q psy5297 76 -ISVVDQ--------------IFTRVGAA-----------DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGT 128 (185)
Q Consensus 76 -~~~~~~--------------~l~~~~l~-----------~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~ 128 (185)
.++.++ +.+.+++. ...++++.+||+|||||++|||++ .+|+++||||||+|+
T Consensus 79 ~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 158 (237)
T 2cbz_A 79 NDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 158 (237)
T ss_dssp SEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTS
T ss_pred CcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 222222 22222221 124678899999999999999999 999999999995555
Q ss_pred CcCChhHHHHHHH--HHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 129 STFDGFGMACSIA--RELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 129 ~~~d~~~~~~~il--~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+.....+.+.+. ..+ . .+.|+|++||+.+....||++++|++|+++..+++++
T Consensus 159 D~~~~~~i~~~l~~~~~~-~-~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 214 (237)
T 2cbz_A 159 DAHVGKHIFENVIGPKGM-L-KNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQE 214 (237)
T ss_dssp CHHHHHHHHHHTTSTTST-T-TTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHH
T ss_pred CHHHHHHHHHHHHHHHhh-c-CCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 4433333332221 111 2 4889999999933345799999999999998887653
No 33
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2e-39 Score=255.04 Aligned_cols=161 Identities=12% Similarity=0.148 Sum_probs=127.1
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHH--------HHhhCce
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF--------LAQIGCF 68 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~--------~~~~g~~ 68 (185)
.++++++...| +. .+++|+||++++|++++|+||||||||||+|+| |.|.+ ...++ |
T Consensus 10 ~l~~~~ls~~y-----~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~-~ 82 (214)
T 1sgw_A 10 KLEIRDLSVGY-----DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF-F 82 (214)
T ss_dssp EEEEEEEEEES-----SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEE-E
T ss_pred eEEEEEEEEEe-----CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEE-E
Confidence 45666665444 23 799999999999999999999999999999999 33332 23455 9
Q ss_pred ecCCCCCc---ch-------------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297 69 VPCDSATI---SV-------------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG 125 (185)
Q Consensus 69 v~~~~~~~---~~-------------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~ 125 (185)
+||++..+ ++ ++++++.+++.+. ++++++||+|||||++||+++ .+|+++||||||
T Consensus 83 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 83 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred EeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 99986322 21 2345677888877 899999999999999999999 999999999998
Q ss_pred CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeeeE
Q psy5297 126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVHE 176 (185)
Q Consensus 126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~i 176 (185)
+|+|+.....+.+.+ +.+++ .|.|||++||+ .++..+||+++.+ .|++
T Consensus 162 s~LD~~~~~~l~~~l-~~~~~-~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSI-LEILK-EKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TTSCTTTHHHHHHHH-HHHHH-HHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred cCCCHHHHHHHHHHH-HHHHh-CCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 888888877776655 66665 38999999999 7888899998866 4555
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=7.9e-39 Score=258.32 Aligned_cols=173 Identities=12% Similarity=0.084 Sum_probs=127.2
Q ss_pred eEEEcccCCceeeecCC-ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHH-------------HHH
Q psy5297 5 TLVLNQCRHPIVELQGG-VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSV-------------FLA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~-~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~-------------~~~ 63 (185)
.+++++++..| .+. .+.+++|+||++++|++++|+||||||||||+|+| |.|. +..
T Consensus 17 ~l~i~~l~~~y---~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~ 93 (260)
T 2ghi_A 17 NIEFSDVNFSY---PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRS 93 (260)
T ss_dssp CEEEEEEEECC---TTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHT
T ss_pred eEEEEEEEEEe---CCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhc
Confidence 46677776544 111 14699999999999999999999999999999999 3221 233
Q ss_pred hhCceecCCCCCc--chhh---------------HHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-C
Q psy5297 64 QIGCFVPCDSATI--SVVD---------------QIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 64 ~~g~~v~~~~~~~--~~~~---------------~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
+++ |+||++..+ ++.+ ++++.+++.+. .++++.+||+|||||++|||++ .
T Consensus 94 ~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~ 172 (260)
T 2ghi_A 94 IIG-IVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK 172 (260)
T ss_dssp TEE-EECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH
T ss_pred cEE-EEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc
Confidence 456 999987332 2222 23333444322 2456789999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+++||||||+|+|+.....+.+.+ ..++ .+.|||++||+.+....||++++|++|+++..+++++
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l-~~l~--~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 239 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAV-EDLR--KNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKD 239 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHH-HHHT--TTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHH-HHhc--CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999997776665555444433 5554 3789999999944345699999999999998887643
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=274.84 Aligned_cols=173 Identities=12% Similarity=0.091 Sum_probs=133.1
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-------HHHH-------------HHHh
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-------GVSV-------------FLAQ 64 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-------G~i~-------------~~~~ 64 (185)
.++++++...| .++...+++|+||++++||+++|+||||||||||||+| |.|. ++.+
T Consensus 19 ~i~~~~l~~~y---~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 19 QMTVKDLTAKY---TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp CEEEEEEEEES---SSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHT
T ss_pred eEEEEEEEEEe---cCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCC
Confidence 46666665544 22346799999999999999999999999999999999 2221 2345
Q ss_pred hCceecCCCCCcc----------------hhhHHHhhcCcccccccCcCc-----------cHHHHHHHHHHHHhC-CCC
Q psy5297 65 IGCFVPCDSATIS----------------VVDQIFTRVGAADSQYRGIST-----------FMMEMKETATVIKKC-TEN 116 (185)
Q Consensus 65 ~g~~v~~~~~~~~----------------~~~~~l~~~~l~~~~~~~~~~-----------lS~g~~q~~~ia~~l-~~p 116 (185)
++ |+||++..++ .+.++++.+++.+..++.+.+ ||||||||++|||++ .+|
T Consensus 96 ig-~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P 174 (390)
T 3gd7_A 96 FG-VIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 174 (390)
T ss_dssp EE-EESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred EE-EEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCC
Confidence 66 9999874432 244567788888888898888 999999999999999 999
Q ss_pred eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 117 SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 117 ~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+++|||||++++|+.....+...+ +.+. .+.|+|++||+.+....|||+++|++|+++..+++++
T Consensus 175 ~lLLLDEPts~LD~~~~~~l~~~l-~~~~--~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~e 239 (390)
T 3gd7_A 175 KILLLDEPSAHLDPVTYQIIRRTL-KQAF--ADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILE 239 (390)
T ss_dssp CEEEEESHHHHSCHHHHHHHHHHH-HTTT--TTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHHH-HHHh--CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999995555443333332222 3222 4789999999966666799999999999999988754
No 36
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.6e-38 Score=257.02 Aligned_cols=172 Identities=12% Similarity=0.103 Sum_probs=129.6
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH------HHHHH---------hhCc-e
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV------SVFLA---------QIGC-F 68 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~------i~~~~---------~~g~-~ 68 (185)
++++++...|-.. ++.+.+++|+||+++ |++++|+||||||||||+|+| |. |.+.. +..+ |
T Consensus 2 l~~~~l~~~y~~~-~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 2 IQLKNVGITLSGK-GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEEEE-TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEEEeCCC-CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEE
Confidence 5566665544110 011579999999999 999999999999999999999 32 22211 1224 8
Q ss_pred ecCCCCC-cc-----------------hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCC
Q psy5297 69 VPCDSAT-IS-----------------VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGT 128 (185)
Q Consensus 69 v~~~~~~-~~-----------------~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~ 128 (185)
+||++.. .+ .++++++.+++. +..++++++||+|||||++||+++ .+|+++||||||+|
T Consensus 80 v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~- 158 (263)
T 2pjz_A 80 LPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN- 158 (263)
T ss_dssp CGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT-
T ss_pred eCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc-
Confidence 8887632 12 234567888998 889999999999999999999999 99999999999555
Q ss_pred CcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhc-cccceeeeeEEEEeccCC
Q psy5297 129 STFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSR-VIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 129 ~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d-~~~~l~~g~i~~~~~~~~ 184 (185)
+|.....+. .+.+.+... |+|++||+ .++.++|| ++++|++|+++..+++++
T Consensus 159 --LD~~~~~~l-~~~L~~~~~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~ 212 (263)
T 2pjz_A 159 --VDAARRHVI-SRYIKEYGK-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSE 212 (263)
T ss_dssp --CCHHHHHHH-HHHHHHSCS-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHH
T ss_pred --cCHHHHHHH-HHHHHHhcC-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHH
Confidence 554444442 244444223 99999999 77788999 999999999999887654
No 37
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.7e-39 Score=264.82 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=115.9
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCCc--chhhHH----------
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATI--SVVDQI---------- 82 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~~--~~~~~~---------- 82 (185)
+.+++|+||++++|++++|+||||||||||+|+| |.|.+.++++ |+||++..+ ++.+++
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~ 129 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS-FCSQNSWIMPGTIKENIIGVSYDEYRY 129 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEE-EECSSCCCCSSBHHHHHHTTCCCHHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEE-EEeCCCccCcccHHHHhhCcccchHHH
Confidence 5699999999999999999999999999999999 5555555667 999987332 333333
Q ss_pred ---HhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhc
Q psy5297 83 ---FTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASN 147 (185)
Q Consensus 83 ---l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~ 147 (185)
++.+++.+.. ++++.+||+|||||++|||++ .+|+++||||||+|+|+.....+.+.++..+ .
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~-~- 207 (290)
T 2bbs_A 130 RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL-M- 207 (290)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC-T-
T ss_pred HHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh-h-
Confidence 2223333222 233579999999999999999 9999999999966555444333322111122 2
Q ss_pred CCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 148 RQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 148 ~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+.|||++||+.+....||++++|++|+++..+++++
T Consensus 208 ~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~ 244 (290)
T 2bbs_A 208 ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 244 (290)
T ss_dssp TTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHH
Confidence 3789999999944445799999999999998887653
No 38
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=1.2e-36 Score=280.59 Aligned_cols=182 Identities=54% Similarity=0.948 Sum_probs=157.2
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHH
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQI 82 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~ 82 (185)
.+.+.+++++||+++...+.+++++|++|++++|++++|+||||||||||||++|.+.+.++.|+|+|+....++.++.+
T Consensus 629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i 708 (934)
T 3thx_A 629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCI 708 (934)
T ss_dssp SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEE
T ss_pred CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHH
Confidence 45799999999999865556789999999999999999999999999999999999999999999999988778888999
Q ss_pred HhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHH
Q psy5297 83 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIA 162 (185)
Q Consensus 83 l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~ 162 (185)
+.++++.+...+..++||+||++++.+++++.+|+++|||||++|||+.++..+.+.+++.+.++.|+++|++||+.++.
T Consensus 709 ~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~ 788 (934)
T 3thx_A 709 LARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT 788 (934)
T ss_dssp EEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG
T ss_pred HHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH
Confidence 99999998889999999999999999999889999999999999999999998877777888764599999999998888
Q ss_pred HhhccccceeeeeEEEEeccCC
Q psy5297 163 LLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 163 ~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+||++..+++|++...++.++
T Consensus 789 ~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 789 ALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp GGGGTCTTEEEEEEEEEEETTE
T ss_pred HHhcccceeEeeEEEEEecCCc
Confidence 9999999999999998877654
No 39
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-36 Score=269.09 Aligned_cols=172 Identities=17% Similarity=0.189 Sum_probs=130.5
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~ 64 (185)
++++|+...|- ++.+++++|+||++++||+++|+||||||||||+|+| |.| .++.+
T Consensus 342 i~~~~v~~~y~---~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 342 VSFENVEFRYF---ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp EEEEEEEECSS---SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred EEEEEEEEEcC---CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 55555554331 2346799999999999999999999999999999999 333 23566
Q ss_pred hCceecCCCCCcc--hhhH---------------HHhhc-----------CcccccccCcCccHHHHHHHHHHHHhC-CC
Q psy5297 65 IGCFVPCDSATIS--VVDQ---------------IFTRV-----------GAADSQYRGISTFMMEMKETATVIKKC-TE 115 (185)
Q Consensus 65 ~g~~v~~~~~~~~--~~~~---------------~l~~~-----------~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~ 115 (185)
++ |+||++..++ +.++ .++.. |++...+++..+||||||||++|||++ .+
T Consensus 419 i~-~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~ 497 (587)
T 3qf4_A 419 IS-AVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKK 497 (587)
T ss_dssp EE-EECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTC
T ss_pred eE-EECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcC
Confidence 77 9999984432 2222 22222 334445677889999999999999999 99
Q ss_pred CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 116 NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 116 p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
|+++||||||+++|+.....+.+.+ +.+. .++|+|++||+......||++++|++|++++.|++++
T Consensus 498 p~illlDEpts~LD~~~~~~i~~~l-~~~~--~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~e 563 (587)
T 3qf4_A 498 PKVLILDDCTSSVDPITEKRILDGL-KRYT--KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKE 563 (587)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHH-HHHS--TTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHH-HHhC--CCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999997776665555554443 4443 4899999999955567899999999999999998765
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.1e-36 Score=268.18 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=122.1
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHHhhCceecCCCCCc--ch-
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLAQIGCFVPCDSATI--SV- 78 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~~~g~~v~~~~~~~--~~- 78 (185)
+++++|+||++++|++++|+||||||||||+|+| |.|. ++.+++ |+||++..+ ++
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~-~v~Q~~~l~~~tv~ 434 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFA-LVSQNVHLFNDTIA 434 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeE-EEcCCCccccccHH
Confidence 5799999999999999999999999999999999 3332 233566 999987322 22
Q ss_pred ---------------hhHHHhhcCccccc-----------ccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcC
Q psy5297 79 ---------------VDQIFTRVGAADSQ-----------YRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTF 131 (185)
Q Consensus 79 ---------------~~~~l~~~~l~~~~-----------~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~ 131 (185)
+.++++.+++.+.. .++..+||||||||++|||++ .+|+++||||||+++|+.
T Consensus 435 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~ 514 (582)
T 3b5x_A 435 NNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514 (582)
T ss_pred HHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 23344455554433 344589999999999999999 999999999997777666
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 132 d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
....+.+.+ +.+. .|+|+|++||+.+..+.||++++|++|++++.|++++
T Consensus 515 ~~~~i~~~l-~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 564 (582)
T 3b5x_A 515 SERAIQAAL-DELQ--KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHAD 564 (582)
T ss_pred HHHHHHHHH-HHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 555554433 4554 3899999999954456799999999999999988764
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-36 Score=270.14 Aligned_cols=172 Identities=13% Similarity=0.126 Sum_probs=129.1
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~ 63 (185)
.++++|++..|- +.+++++|+||++++|++++|+||||||||||+|+| |.| .++.
T Consensus 354 ~i~~~~v~~~y~----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~ 429 (598)
T 3qf4_B 354 EIEFKNVWFSYD----KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRS 429 (598)
T ss_dssp CEEEEEEECCSS----SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEEEEEECC----CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHh
Confidence 356666655441 235699999999999999999999999999999999 333 2345
Q ss_pred hhCceecCCCCCc--chhhH---------------HHhhcCcccccccC-----------cCccHHHHHHHHHHHHhC-C
Q psy5297 64 QIGCFVPCDSATI--SVVDQ---------------IFTRVGAADSQYRG-----------ISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 64 ~~g~~v~~~~~~~--~~~~~---------------~l~~~~l~~~~~~~-----------~~~lS~g~~q~~~ia~~l-~ 114 (185)
+++ |+||++..+ ++.++ +++..++.+..++. ..+||||||||++|||++ .
T Consensus 430 ~i~-~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~ 508 (598)
T 3qf4_B 430 SIG-IVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA 508 (598)
T ss_dssp HEE-EECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred ceE-EEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 677 999998433 33332 33333443333333 368999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+++||||||+++|+.....+.+.+ ..+. .|+|+|++||+....+.||++++|++|++++.|++++
T Consensus 509 ~p~illlDEpts~LD~~~~~~i~~~l-~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~ 575 (598)
T 3qf4_B 509 NPKILILDEATSNVDTKTEKSIQAAM-WKLM--EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDE 575 (598)
T ss_dssp CCSEEEECCCCTTCCHHHHHHHHHHH-HHHH--TTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHH-HHHc--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999997777666655555544 5554 3899999999944445699999999999999998764
No 42
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2e-36 Score=268.31 Aligned_cols=172 Identities=15% Similarity=0.101 Sum_probs=128.1
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHHh
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLAQ 64 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~~ 64 (185)
++++|+...| .++.+++++|+||++++|++++|+||||||||||+|+| |.| .++.+
T Consensus 342 i~~~~v~~~y---~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 342 LEFRNVTFTY---PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp EEEEEEEECS---SSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred EEEEEEEEEc---CCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 5555554433 11125799999999999999999999999999999999 322 23445
Q ss_pred hCceecCCCCCc--ch----------------hhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC-C
Q psy5297 65 IGCFVPCDSATI--SV----------------VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 65 ~g~~v~~~~~~~--~~----------------~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
++ |+||++..+ ++ +.++++.+++.+. ..++..+||||||||++|||++ .
T Consensus 419 i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~ 497 (582)
T 3b60_A 419 VA-LVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_dssp EE-EECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred Ce-EEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 66 999987322 22 2233444444333 3345689999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+++||||||+++|+.....+.+.+ +.+.+ |+|+|++||+.+..+.||++++|++|++++.|++++
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l-~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 564 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQAAL-DELQK--NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSE 564 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHH-HHHHT--TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHH-HHHhC--CCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999997777666655555543 55543 899999999944446799999999999999988754
No 43
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=6.8e-36 Score=265.52 Aligned_cols=173 Identities=14% Similarity=0.151 Sum_probs=127.6
Q ss_pred EEEcccCCceeeecCC-ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297 6 LVLNQCRHPIVELQGG-VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA 63 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~-~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~ 63 (185)
++++|++..| .++ .+++++|+||++++|++++|+||||||||||+|+| |.| .++.
T Consensus 342 i~~~~v~~~y---~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 418 (595)
T 2yl4_A 342 LEFKNVHFAY---PARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418 (595)
T ss_dssp EEEEEEEEEC---SSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHH
T ss_pred EEEEEEEEEe---CCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHh
Confidence 5566655443 111 24799999999999999999999999999999999 332 2344
Q ss_pred hhCceecCCCCCc--ch------------------hhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHh
Q psy5297 64 QIGCFVPCDSATI--SV------------------VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKK 112 (185)
Q Consensus 64 ~~g~~v~~~~~~~--~~------------------~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~ 112 (185)
+++ |+||++..+ ++ +.++++.+++.+. ..++..+||||||||++|||+
T Consensus 419 ~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAra 497 (595)
T 2yl4_A 419 KIG-TVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA 497 (595)
T ss_dssp SEE-EECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHH
T ss_pred ceE-EEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHH
Confidence 566 999987322 22 2234444554332 233448999999999999999
Q ss_pred C-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCCC
Q psy5297 113 C-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 113 l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
+ .+|+++||||||+++|+.....+.+.+ +.+.+ +.|+|++||+....+.||++++|++|++++.|+++++
T Consensus 498 l~~~p~illlDEpts~LD~~~~~~i~~~l-~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 568 (595)
T 2yl4_A 498 LLKNPKILLLDEATSALDAENEYLVQEAL-DRLMD--GRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEEL 568 (595)
T ss_dssp HHHCCSEEEEECCCSSCCHHHHHHHHHHH-HHHHT--TSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC-
T ss_pred HHcCCCEEEEECcccCCCHHHHHHHHHHH-HHHhc--CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 9 999999999997776665544444433 55543 7899999999444456999999999999999988764
No 44
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.6e-36 Score=268.84 Aligned_cols=173 Identities=18% Similarity=0.134 Sum_probs=127.2
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~ 63 (185)
.++++|++..|- ++.+++++|+||++++|++++|+||||||||||+|+| |.| .++.
T Consensus 339 ~i~~~~v~~~y~---~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 339 RIDIDHVSFQYN---DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp CEEEEEEEECSC---SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEEEEEEcC---CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 355555554431 2235799999999999999999999999999999999 333 2345
Q ss_pred hhCceecCCCCCc--chhhH---------------HHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 64 QIGCFVPCDSATI--SVVDQ---------------IFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 64 ~~g~~v~~~~~~~--~~~~~---------------~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
+++ |+||++..+ ++.++ .++..++.+ ...++..+||||||||++|||++ .
T Consensus 416 ~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 416 QIG-LVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp TEE-EECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred heE-EEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 667 999998433 33222 233333322 23445578999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+++||||||+++|+.....+.+. ++.+. .+.|+|++||+.+..+.||++++|++|++++.|++++
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~-l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~e 561 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEA-LDVLS--KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRE 561 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHH-HHHHT--TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHH-HHHHc--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence 9999999999777666544444333 34553 3789999999944446699999999999999998764
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1e-36 Score=268.08 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=126.2
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCC---cch--------------
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSAT---ISV-------------- 78 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~---~~~-------------- 78 (185)
..+++++|++++||+++|+||||||||||+|+| |.|.+...++ |+||+... .++
T Consensus 300 ~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~-~v~Q~~~~~~~~tv~~~~~~~~~~~~~~ 378 (538)
T 1yqt_A 300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA-YKPQYIKADYEGTVYELLSKIDASKLNS 378 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEE-EECSSCCCCCSSBHHHHHHHHHHHHHTC
T ss_pred EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEE-EEecCCcCCCCCcHHHHHHhhhccCCCH
Confidence 357778888899999999999999999999999 4444433455 99998622 221
Q ss_pred ---hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEE
Q psy5297 79 ---VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLF 154 (185)
Q Consensus 79 ---~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii 154 (185)
++++++.+++.+..++++.+||||||||++||+++ .+|++|||||||+|+|......+.+.+ +.+.++.|.|||+
T Consensus 379 ~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l-~~l~~~~g~tvi~ 457 (538)
T 1yqt_A 379 NFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI-RHLMEKNEKTALV 457 (538)
T ss_dssp HHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH-HHHHHHHTCEEEE
T ss_pred HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhCCCEEEE
Confidence 23456677888888999999999999999999999 999999999997776666555555544 5555335899999
Q ss_pred ecCh-hHHHHhhccccceee--eeEEEEeccCC
Q psy5297 155 ATHF-HEIALLSRVIPTFRN--VHESKYLYHTN 184 (185)
Q Consensus 155 ~tH~-~~~~~~~d~~~~l~~--g~i~~~~~~~~ 184 (185)
+||| .++..+|||+++|++ |++...+++++
T Consensus 458 vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 458 VEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp ECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred EeCCHHHHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 9999 888899999999986 67777777654
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2e-36 Score=269.24 Aligned_cols=159 Identities=14% Similarity=0.160 Sum_probs=127.4
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCC---cch--------------
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSAT---ISV-------------- 78 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~---~~~-------------- 78 (185)
..+++++|++++||+++|+||||||||||+|+| |.|.+...++ |+||+... .++
T Consensus 370 ~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~-~v~Q~~~~~~~~tv~e~~~~~~~~~~~~ 448 (607)
T 3bk7_A 370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA-YKPQYIKAEYEGTVYELLSKIDSSKLNS 448 (607)
T ss_dssp CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEE-EECSSCCCCCSSBHHHHHHHHHHHHHHC
T ss_pred eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEE-EEecCccCCCCCcHHHHHHhhhccCCCH
Confidence 367888888999999999999999999999999 4454433456 99998622 221
Q ss_pred ---hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEE
Q psy5297 79 ---VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLF 154 (185)
Q Consensus 79 ---~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii 154 (185)
+.++++.+++.+..++++++||||||||++||+++ .+|++|||||||+|+|+.....+.+.+ +.+.++.|.|||+
T Consensus 449 ~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l-~~l~~~~g~tvi~ 527 (607)
T 3bk7_A 449 NFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI-RHLMEKNEKTALV 527 (607)
T ss_dssp HHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH-HHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHHhCCCEEEE
Confidence 23456778888888999999999999999999999 999999999997776666555555544 6665436899999
Q ss_pred ecCh-hHHHHhhccccceee--eeEEEEeccCC
Q psy5297 155 ATHF-HEIALLSRVIPTFRN--VHESKYLYHTN 184 (185)
Q Consensus 155 ~tH~-~~~~~~~d~~~~l~~--g~i~~~~~~~~ 184 (185)
+||| .++..+|||+++|++ |++...+++++
T Consensus 528 vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 528 VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp ECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred EeCCHHHHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 9999 788889999999986 67777777654
No 47
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-35 Score=261.03 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=118.8
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHHHHHhhCceecCCCCC---cc---------------
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSAT---IS--------------- 77 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~~~~~g~~v~~~~~~---~~--------------- 77 (185)
..+.+.||++++||+++|+||||||||||+|+| |.|.+.....+|+||.... .+
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 361 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALST 361 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCT
T ss_pred EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccch
Confidence 356667788999999999999999999999999 4443332222378876421 11
Q ss_pred ---hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEE
Q psy5297 78 ---VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTL 153 (185)
Q Consensus 78 ---~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vi 153 (185)
.++++++.+++.+..++++++||||||||++|||++ .+|++|||||||+|+|+.....+.+.+ +.++++.|.|||
T Consensus 362 ~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l-~~l~~~~g~tvi 440 (538)
T 3ozx_A 362 SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAI-KRVTRERKAVTF 440 (538)
T ss_dssp TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH-HHHHHHTTCEEE
T ss_pred hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHHHhCCCEEE
Confidence 134566778888889999999999999999999999 999999999997776666655555544 666554689999
Q ss_pred EecCh-hHHHHhhccccceeee
Q psy5297 154 FATHF-HEIALLSRVIPTFRNV 174 (185)
Q Consensus 154 i~tH~-~~~~~~~d~~~~l~~g 174 (185)
++||| .++..+|||+++|+++
T Consensus 441 ~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 441 IIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp EECSCHHHHHHHCSEEEEEEEE
T ss_pred EEeCCHHHHHHhCCEEEEEeCC
Confidence 99999 8888899999999874
No 48
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=6.3e-35 Score=268.57 Aligned_cols=177 Identities=41% Similarity=0.715 Sum_probs=150.0
Q ss_pred CceEEEcccCCceeee--cCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhh
Q psy5297 3 TGTLVLNQCRHPIVEL--QGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVD 80 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~--~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~ 80 (185)
++.+.+++.+||+++. ..+.++|++|++|++++|++++|+||||||||||||++|.+.+.++.|.++|+....++.++
T Consensus 638 ~~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d 717 (918)
T 3thx_B 638 ERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVD 717 (918)
T ss_dssp SCEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCS
T ss_pred CCcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHH
Confidence 3468999999999873 22457899999999999999999999999999999999999999999999999887778888
Q ss_pred HHHhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhH
Q psy5297 81 QIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHE 160 (185)
Q Consensus 81 ~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~ 160 (185)
.++.++++.+......++||+||+|++.+++++.+|+++|||||++|||+.++..+.+.+++.+.++.|+++|++||+.+
T Consensus 718 ~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e 797 (918)
T 3thx_B 718 GIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP 797 (918)
T ss_dssp EEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence 89999999999999999999999999999999999999999999999999999998877778886546999999999988
Q ss_pred HHHhhccccc-eeeeeEEEE
Q psy5297 161 IALLSRVIPT-FRNVHESKY 179 (185)
Q Consensus 161 ~~~~~d~~~~-l~~g~i~~~ 179 (185)
+.++||+... +.++++.+.
T Consensus 798 l~~l~~~~~~~v~n~~~~~~ 817 (918)
T 3thx_B 798 VCELEKNYSHQVGNYHMGFL 817 (918)
T ss_dssp GGGHHHHTTTTEEEEEEEEE
T ss_pred HHHHHhhcccceEEEEEEEE
Confidence 8899999874 889998763
No 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=262.82 Aligned_cols=160 Identities=13% Similarity=0.103 Sum_probs=126.7
Q ss_pred eeeeceEEEeeCCc-----eeEEEEccCCCcHHHHHHHH-HHHHH-------HHhhCceecCCCCC---cc---------
Q psy5297 23 SYIPNDVYFKSGEV-----SFNLVTGPNMGGKSTYIRSI-GVSVF-------LAQIGCFVPCDSAT---IS--------- 77 (185)
Q Consensus 23 ~~il~~isl~i~~g-----~~~~l~G~NGsGKSTLlk~i-G~i~~-------~~~~g~~v~~~~~~---~~--------- 77 (185)
..+++|+||++.+| |+++|+||||||||||+|+| |.... ...++ |+||.... .+
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~-~~~q~~~~~~~~tv~e~~~~~~ 438 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVS-MKPQKIAPKFPGTVRQLFFKKI 438 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEE-EECSSCCCCCCSBHHHHHHHHC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEE-EecccccccCCccHHHHHHHHh
Confidence 35789999999999 77999999999999999999 22110 11234 78876421 11
Q ss_pred --------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcC
Q psy5297 78 --------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNR 148 (185)
Q Consensus 78 --------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~ 148 (185)
..+++++.+++.+..++++++||||||||++||+++ .+|++|||||||+|+|+.....+.+.+ +.+.++.
T Consensus 439 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll-~~l~~~~ 517 (608)
T 3j16_B 439 RGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI-RRFILHN 517 (608)
T ss_dssp SSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHH-HHHHHHH
T ss_pred hcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHHhC
Confidence 234567788888889999999999999999999999 999999999997777666655555544 5654335
Q ss_pred CCeEEEecCh-hHHHHhhccccceee--eeEEEEeccCC
Q psy5297 149 QPFTLFATHF-HEIALLSRVIPTFRN--VHESKYLYHTN 184 (185)
Q Consensus 149 ~~~vii~tH~-~~~~~~~d~~~~l~~--g~i~~~~~~~~ 184 (185)
|.|||++||| .++..+|||+++|++ |++...+++++
T Consensus 518 g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~ 556 (608)
T 3j16_B 518 KKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPES 556 (608)
T ss_dssp TCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEE
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHH
Confidence 9999999999 888899999999997 78888888765
No 50
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.6e-34 Score=258.37 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=84.3
Q ss_pred HhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CCCe--EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 83 FTRVGAADS-QYRGISTFMMEMKETATVIKKC-TENS--LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 83 l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~p~--llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
++.+|+.+. .++++++||||||||++|||++ .+|+ +|||||||+|+|+.....+.+.+ +.+++ .|.|||+||||
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l-~~l~~-~g~tvi~vtHd 263 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATL-KSMRD-LGNTLIVVEHD 263 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHH-HHHHH-TTCEEEEECCC
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHH-HHHHH-cCCEEEEEeCC
Confidence 556677654 6899999999999999999999 9988 99999998888888777776654 77776 59999999999
Q ss_pred hHHHHhhccccce------eeeeEEEEeccCC
Q psy5297 159 HEIALLSRVIPTF------RNVHESKYLYHTN 184 (185)
Q Consensus 159 ~~~~~~~d~~~~l------~~g~i~~~~~~~~ 184 (185)
.+....||++++| ++|++++.+++++
T Consensus 264 ~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 264 EDTMLAADYLIDIGPGAGIHGGEVVAAGTPEE 295 (670)
T ss_dssp HHHHHHCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred HHHHhhCCEEEEecccccccCCEEEEecCHHH
Confidence 5556679999999 8999999997654
No 51
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=1.3e-33 Score=257.49 Aligned_cols=179 Identities=42% Similarity=0.671 Sum_probs=147.0
Q ss_pred CceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHH
Q psy5297 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQI 82 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~ 82 (185)
++.+.+++++||+++...+.+++++|++|+ ++|++++|+||||||||||||+|+.+.+.++.|.++|+....++.++++
T Consensus 575 ~~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i 653 (800)
T 1wb9_A 575 KPGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRI 653 (800)
T ss_dssp SSCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEE
T ss_pred CCCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHH
Confidence 456899999999987433457899999999 9999999999999999999999988888899998999877667777778
Q ss_pred HhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHH
Q psy5297 83 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIA 162 (185)
Q Consensus 83 l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~ 162 (185)
+..++..+......++||.+|++...+++.+.+|+++|||||++||++.|+..+.+.+++.+.++.|.++|++||+.++.
T Consensus 654 ~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~ 733 (800)
T 1wb9_A 654 FTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 733 (800)
T ss_dssp EEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred HhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH
Confidence 88888888888888999999998888887779999999999999999999998866677888763589999999997777
Q ss_pred HhhccccceeeeeEEEEecc
Q psy5297 163 LLSRVIPTFRNVHESKYLYH 182 (185)
Q Consensus 163 ~~~d~~~~l~~g~i~~~~~~ 182 (185)
.+||++..+.++++......
T Consensus 734 ~l~d~~~~v~n~~~~~~~~~ 753 (800)
T 1wb9_A 734 QLPEKMEGVANVHLDALEHG 753 (800)
T ss_dssp GHHHHSTTEEEEEEEEEEET
T ss_pred HHhhhhhceEEEEEEEEEcC
Confidence 89999999999999876544
No 52
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=1.2e-33 Score=262.95 Aligned_cols=174 Identities=41% Similarity=0.649 Sum_probs=141.2
Q ss_pred CceEEEcccCCceeeecC-CceeeeceEEEeeCC-------ceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCC
Q psy5297 3 TGTLVLNQCRHPIVELQG-GVSYIPNDVYFKSGE-------VSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSA 74 (185)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~-~~~~il~~isl~i~~-------g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~ 74 (185)
++.+++++++||.++..- +.+++++|++|++++ |++++|+||||||||||||++|.+.+++++|+||||...
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEE
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcC
Confidence 456999999999987543 457899999999987 899999999999999999999999999999999999988
Q ss_pred CcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEE
Q psy5297 75 TISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTL 153 (185)
Q Consensus 75 ~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vi 153 (185)
.+++++.++.++|..+......++||++|++ +++++++ .+|+++|||||++|||+.|+..+.+.+++++.++.|+++|
T Consensus 828 ~l~v~d~I~~rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl 906 (1022)
T 2o8b_B 828 RLTPIDRVFTRLGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTL 906 (1022)
T ss_dssp EECCCSBEEEECC---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEE
T ss_pred CCCHHHHHHHHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEE
Confidence 8888999999999988888889999999987 6777777 9999999999999999999877777777888864489999
Q ss_pred EecCh-hHHHHhhccccceeeeeEEE
Q psy5297 154 FATHF-HEIALLSRVIPTFRNVHESK 178 (185)
Q Consensus 154 i~tH~-~~~~~~~d~~~~l~~g~i~~ 178 (185)
++||+ ..+..+||++.++ +|++..
T Consensus 907 ~~TH~~el~~~~~d~~~v~-~g~~~~ 931 (1022)
T 2o8b_B 907 FSTHYHSLVEDYSQNVAVR-LGHMAC 931 (1022)
T ss_dssp EECCCHHHHHHTSSCSSEE-EEEEEE
T ss_pred EEeCCHHHHHHhCCcceee-cCeEEE
Confidence 99999 5556678988775 688873
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.2e-33 Score=246.81 Aligned_cols=148 Identities=15% Similarity=0.116 Sum_probs=117.0
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH---------HHH---------H------hhCceecC
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS---------VFL---------A------QIGCFVPC 71 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i---------~~~---------~------~~g~~v~~ 71 (185)
+++.|+| ++++||+++|+||||||||||+|+| |.+ .+. . .++ +++|
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~q 113 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPV-VKPQ 113 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCE-EECS
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhh-hhhh
Confidence 5899999 9999999999999999999999999 442 110 0 012 5555
Q ss_pred CCCC------------------cchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297 72 DSAT------------------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD 132 (185)
Q Consensus 72 ~~~~------------------~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d 132 (185)
.... ...+.++++.+++.+..++++++||+|||||++||+++ .+|++|||||||+++|+..
T Consensus 114 ~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~ 193 (538)
T 1yqt_A 114 YVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193 (538)
T ss_dssp CGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred hhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 3211 12456788899999889999999999999999999999 9999999999966655555
Q ss_pred hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297 133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH 175 (185)
Q Consensus 133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~ 175 (185)
...+.+. ++.+++ .|.|||++||+ .++..+||++++|+++.
T Consensus 194 ~~~l~~~-L~~l~~-~g~tvi~vsHd~~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 194 RLNAARA-IRRLSE-EGKSVLVVEHDLAVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp HHHHHHH-HHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHH-HHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEcCcc
Confidence 4444443 466766 59999999999 78888999999998653
No 54
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.6e-33 Score=265.96 Aligned_cols=174 Identities=11% Similarity=0.059 Sum_probs=134.6
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~ 63 (185)
.++++|++..|-.. ...++|+|+||++++|+.++|+||+|||||||+++| |.| .++.
T Consensus 415 ~I~~~nvsF~Y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 415 DITVENVHFTYPSR--PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CEEEEEEEECCSSS--TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred cEEEEEeeeeCCCC--CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhh
Confidence 46677776655332 236899999999999999999999999999999999 333 3456
Q ss_pred hhCceecCCCCCcc--h---------------hhHHHhhcCccc-----------ccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 64 QIGCFVPCDSATIS--V---------------VDQIFTRVGAAD-----------SQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 64 ~~g~~v~~~~~~~~--~---------------~~~~l~~~~l~~-----------~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
+++ ||||++..+. + +.++++..++.+ ....+-.+||||||||++||||+ .
T Consensus 493 ~i~-~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 493 NVA-VVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp HEE-EECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred ccc-ccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 778 9999985443 2 223333333322 23345568999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+++|||||||++|+.....+.+.+ ..+.+ ++|+|++||.....+.||+|++|++|+|++.|+.++
T Consensus 572 ~~~IliLDE~tSaLD~~te~~i~~~l-~~~~~--~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAESEGIVQQAL-DKAAK--GRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHH-HHHHT--TSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEecccccCCHHHHHHHHHHH-HHHhC--CCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHH
Confidence 99999999998888877644444444 55554 899999999976778899999999999999998765
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.98 E-value=1.2e-33 Score=269.17 Aligned_cols=173 Identities=14% Similarity=0.106 Sum_probs=129.8
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~ 63 (185)
.++++|++..|-+ +...+||+|+||+|++||.++|+||+|||||||+++| |.| .++.
T Consensus 1076 ~I~f~nVsf~Y~~--~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPE--RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp CEEEEEEEECCTT--SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHT
T ss_pred eEEEEEEEEeCCC--CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHh
Confidence 4677777655522 1235799999999999999999999999999999999 433 3466
Q ss_pred hhCceecCCCCCcc--h-----------------hhHHHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC
Q psy5297 64 QIGCFVPCDSATIS--V-----------------VDQIFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC 113 (185)
Q Consensus 64 ~~g~~v~~~~~~~~--~-----------------~~~~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l 113 (185)
+++ +|||++..++ + +.++++..++.+. ....-.+||||||||++||||+
T Consensus 1154 ~i~-~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1154 QIA-IVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp TEE-EECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred heE-EECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 777 9999984433 2 2233444444322 2334467999999999999999
Q ss_pred -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhc-CCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASN-RQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~-~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|++||||||||++|+.....+. +.+.+. .++|+|+++|.......||+|++|++|+|++.|++++
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq----~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~e 1301 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQ----EALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQ 1301 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHH----HHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHH
T ss_pred HhCCCEEEEeCccccCCHHHHHHHH----HHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999996666554433333 333332 4899999999866667799999999999999999875
No 56
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.98 E-value=5.1e-33 Score=247.33 Aligned_cols=147 Identities=14% Similarity=0.122 Sum_probs=116.8
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH---------HHH------------H---hhCceecC
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS---------VFL------------A---QIGCFVPC 71 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i---------~~~------------~---~~g~~v~~ 71 (185)
+++.|+| ++++|++++|+||||||||||||+| |.+ .+. . .++ +++|
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~-~~~q 183 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPV-VKPQ 183 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCE-EECS
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceE-Eeec
Confidence 5899999 9999999999999999999999999 443 110 0 012 4555
Q ss_pred CCCC------------------cchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCC
Q psy5297 72 DSAT------------------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFD 132 (185)
Q Consensus 72 ~~~~------------------~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d 132 (185)
.... ...++++++.+++.+..++++++||||||||++||+++ .+|++|||||||+++|+..
T Consensus 184 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~ 263 (607)
T 3bk7_A 184 YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263 (607)
T ss_dssp CGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHH
T ss_pred hhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 3210 12456788899999999999999999999999999999 9999999999966666655
Q ss_pred hhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeee
Q psy5297 133 GFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNV 174 (185)
Q Consensus 133 ~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g 174 (185)
...+.+. ++.+++ .|.|||++||| ..+..+||++++|+++
T Consensus 264 ~~~l~~~-L~~l~~-~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 264 RLKVARV-IRRLAN-EGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHH-HHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHH-HHHHHh-cCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 5545554 466766 59999999999 7778899999999864
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.98 E-value=1.2e-32 Score=247.50 Aligned_cols=101 Identities=14% Similarity=0.055 Sum_probs=82.9
Q ss_pred HHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CCC---eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEec
Q psy5297 82 IFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TEN---SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFAT 156 (185)
Q Consensus 82 ~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~p---~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~t 156 (185)
.+..+++.. ..++++.+||||||||++|||++ .+| ++|||||||+|+|+.+...+.+.+ +.+++ .|.|||++|
T Consensus 526 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l-~~l~~-~g~tvi~vt 603 (670)
T 3ux8_A 526 TLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVL-HRLVD-NGDTVLVIE 603 (670)
T ss_dssp HHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHH-HHHHH-TTCEEEEEC
T ss_pred HHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHH-CCCEEEEEe
Confidence 345566653 46889999999999999999999 765 699999998887777766666654 67776 599999999
Q ss_pred ChhHHHHhhccccce------eeeeEEEEeccCC
Q psy5297 157 HFHEIALLSRVIPTF------RNVHESKYLYHTN 184 (185)
Q Consensus 157 H~~~~~~~~d~~~~l------~~g~i~~~~~~~~ 184 (185)
||.+....||++++| ++|++++.|++++
T Consensus 604 Hd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~ 637 (670)
T 3ux8_A 604 HNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEE 637 (670)
T ss_dssp CCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHH
T ss_pred CCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHH
Confidence 995556789999999 8999999998764
No 58
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.98 E-value=4e-33 Score=265.13 Aligned_cols=174 Identities=11% Similarity=0.066 Sum_probs=125.8
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHHH-------------HHH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSV-------------FLA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~-------------~~~ 63 (185)
.++++|+...|-.. ...++++|+||++++||+++|+||||||||||+++| |.|. ++.
T Consensus 1030 ~i~~~~v~~~y~~~--~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR--PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp CEEEEEEEBCCSCG--GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred cEEEEEEEEECCCC--CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence 36666665544221 124699999999999999999999999999999999 3332 234
Q ss_pred hhCceecCCCCCc--chhhH-----------------HHhhcCcccc-----------cccCcCccHHHHHHHHHHHHhC
Q psy5297 64 QIGCFVPCDSATI--SVVDQ-----------------IFTRVGAADS-----------QYRGISTFMMEMKETATVIKKC 113 (185)
Q Consensus 64 ~~g~~v~~~~~~~--~~~~~-----------------~l~~~~l~~~-----------~~~~~~~lS~g~~q~~~ia~~l 113 (185)
+++ |+||++..+ ++.++ .++..++.+. ..++..+||||||||++|||++
T Consensus 1108 ~i~-~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A 1108 QLG-IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp SCE-EEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred ceE-EECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence 556 999998332 22222 2233333222 2334568999999999999999
Q ss_pred -CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 114 -TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 114 -~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+|+++||||||+++|+.....+.+.+ +.+. .|+|+|++||+.+....|||+++|++|++++.|++++
T Consensus 1187 ~~~p~iLiLDEpTs~lD~~~~~~i~~~l-~~~~--~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~ 1255 (1284)
T 3g5u_A 1187 VRQPHILLLDEATSALDTESEKVVQEAL-DKAR--EGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQ 1255 (1284)
T ss_dssp HHCCSSEEEESCSSSCCHHHHHHHHHHH-HHHS--SSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHH-HHhC--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999996666665544444433 4432 4899999999933346699999999999999998764
No 59
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.97 E-value=9.7e-33 Score=262.46 Aligned_cols=174 Identities=14% Similarity=0.103 Sum_probs=125.1
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-------------HHHH
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-------------VFLA 63 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-------------~~~~ 63 (185)
.++++|++..|-. +...++|+|+||++++|++++|+||||||||||+++| |.| .++.
T Consensus 387 ~i~~~~v~~~y~~--~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 387 NLEFKNIHFSYPS--RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CEEEEEEEECCSS--TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEEEEEEcCC--CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 3566666554421 1224799999999999999999999999999999999 333 2345
Q ss_pred hhCceecCCCCCcc--hhhHH---------------HhhcCc-----------ccccccCcCccHHHHHHHHHHHHhC-C
Q psy5297 64 QIGCFVPCDSATIS--VVDQI---------------FTRVGA-----------ADSQYRGISTFMMEMKETATVIKKC-T 114 (185)
Q Consensus 64 ~~g~~v~~~~~~~~--~~~~~---------------l~~~~l-----------~~~~~~~~~~lS~g~~q~~~ia~~l-~ 114 (185)
+++ ||||++..++ +.+++ ++..++ +....++..+||||||||++|||++ .
T Consensus 465 ~i~-~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~ 543 (1284)
T 3g5u_A 465 IIG-VVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR 543 (1284)
T ss_dssp HEE-EECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH
T ss_pred heE-EEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc
Confidence 677 9999984332 22222 222222 2223456678999999999999999 9
Q ss_pred CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 115 ~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
+|+++||||||+++|+.....+.+. ++.+. .|+|+|++||+......||++++|++|++++.|++++
T Consensus 544 ~p~iliLDEpts~LD~~~~~~i~~~-l~~~~--~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~ 610 (1284)
T 3g5u_A 544 NPKILLLDEATSALDTESEAVVQAA-LDKAR--EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDE 610 (1284)
T ss_dssp CCSEEEEESTTCSSCHHHHHHHHHH-HHHHH--TTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-HHHHc--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence 9999999999666555432222222 34433 4899999999944445699999999999999988654
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=9e-33 Score=254.80 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=122.4
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--HHHHH-----HHhhCceecCCC----CCcc------------
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--GVSVF-----LAQIGCFVPCDS----ATIS------------ 77 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--G~i~~-----~~~~g~~v~~~~----~~~~------------ 77 (185)
+.+.+++|+||++++|++++|+||||||||||||+| |.+.- ....+ |++|+. ..++
T Consensus 446 g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~-~v~q~~~~~~~~ltv~e~l~~~~~~~ 524 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTV-YVEHDIDGTHSDTSVLDFVFESGVGT 524 (986)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEE-ETTCCCCCCCTTSBHHHHHHTTCSSC
T ss_pred CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEE-EEcccccccccCCcHHHHHHHhhcCH
Confidence 346799999999999999999999999999999999 33210 00123 677653 1122
Q ss_pred --hhhHHHhhcCcc-cccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEE
Q psy5297 78 --VVDQIFTRVGAA-DSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTL 153 (185)
Q Consensus 78 --~~~~~l~~~~l~-~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vi 153 (185)
.+.++++.+|+. +..++++++||||||||++||+++ .+|++|||||| |+++|.....+. .+.+.+ .|.|+|
T Consensus 525 ~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEP---Ts~LD~~~~~~l-~~~L~~-~g~tvI 599 (986)
T 2iw3_A 525 KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP---TNHLDTVNVAWL-VNYLNT-CGITSI 599 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEEST---TTTCCHHHHHHH-HHHHHH-SCSEEE
T ss_pred HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC---ccCCCHHHHHHH-HHHHHh-CCCEEE
Confidence 244567788884 678999999999999999999999 99999999999 555665555553 355555 589999
Q ss_pred EecCh-hHHHHhhccccceeeeeEE-EEecc
Q psy5297 154 FATHF-HEIALLSRVIPTFRNVHES-KYLYH 182 (185)
Q Consensus 154 i~tH~-~~~~~~~d~~~~l~~g~i~-~~~~~ 182 (185)
++||+ .++..+||++++|++|+++ +.|+.
T Consensus 600 ivSHdl~~l~~~adrii~L~~G~iv~~~G~~ 630 (986)
T 2iw3_A 600 TISHDSVFLDNVCEYIINYEGLKLRKYKGNF 630 (986)
T ss_dssp EECSCHHHHHHHCSEEEEEETTEEEEEESCH
T ss_pred EEECCHHHHHHhCCEEEEEECCeeecCCCCH
Confidence 99999 7888999999999999996 45654
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=2.7e-33 Score=258.27 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=78.5
Q ss_pred hhHHHhhcCccc-c-cccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEe
Q psy5297 79 VDQIFTRVGAAD-S-QYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA 155 (185)
Q Consensus 79 ~~~~l~~~~l~~-~-~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~ 155 (185)
++++++.+|+.+ . .++++++||||||||++||+++ .+|++|||||| |+++|...... +.+.+++ .+.+||++
T Consensus 880 i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEP---T~gLD~~s~~~-L~~~L~~-~g~tVIiI 954 (986)
T 2iw3_A 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEP---TNYLDRDSLGA-LSKALKE-FEGGVIII 954 (986)
T ss_dssp HHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECG---GGTCCHHHHHH-HHHHHHS-CSSEEEEE
T ss_pred HHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECC---ccCCCHHHHHH-HHHHHHH-hCCEEEEE
Confidence 345677788864 3 5888999999999999999999 99999999999 55566565554 4466665 57899999
Q ss_pred cCh-hHHHHhhccccceeeeeEEEEec
Q psy5297 156 THF-HEIALLSRVIPTFRNVHESKYLY 181 (185)
Q Consensus 156 tH~-~~~~~~~d~~~~l~~g~i~~~~~ 181 (185)
||| .++..+||++++|++|+++..|+
T Consensus 955 SHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 955 THSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred ECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999 77778999999999999987664
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.2e-31 Score=234.89 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=113.9
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-----------HHH------------H-hhC-cee
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-----------VFL------------A-QIG-CFV 69 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-----------~~~------------~-~~g-~~v 69 (185)
.+.+++++ .+++|++++|+||||||||||||+| |.+ .+. . ... .+.
T Consensus 91 ~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 169 (608)
T 3j16_B 91 SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIK 169 (608)
T ss_dssp SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhc
Confidence 45666666 5899999999999999999999999 444 110 0 011 011
Q ss_pred cCCCCC-----------------------cchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCC
Q psy5297 70 PCDSAT-----------------------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELG 125 (185)
Q Consensus 70 ~~~~~~-----------------------~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~ 125 (185)
++.... ...++++++.+++.+..++++++||+|||||++||+++ .+|++|||||||
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPt 249 (608)
T 3j16_B 170 PQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPS 249 (608)
T ss_dssp CCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTT
T ss_pred hhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 221100 02466788999999999999999999999999999999 999999999996
Q ss_pred CCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297 126 RGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH 175 (185)
Q Consensus 126 ~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~ 175 (185)
+++|+.....+.+. ++.+++ .|.|||++||+ .++..+||++++|+++.
T Consensus 250 s~LD~~~~~~l~~~-l~~l~~-~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 250 SYLDVKQRLNAAQI-IRSLLA-PTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp TTCCHHHHHHHHHH-HHGGGT-TTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred cCCCHHHHHHHHHH-HHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 66665554444443 466665 58999999999 88889999999998754
No 63
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=7.7e-31 Score=230.54 Aligned_cols=149 Identities=15% Similarity=0.126 Sum_probs=109.7
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------HHH-----------HHHH------------h-hC----
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVS-----------VFLA------------Q-IG---- 66 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i-----------~~~~------------~-~g---- 66 (185)
.+.|.++.. +++|++++|+||||||||||+|+| |.+ .+.. . .+
T Consensus 13 ~f~l~~l~~-~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~ 91 (538)
T 3ozx_A 13 GFKLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHK 91 (538)
T ss_dssp SCEEECCCC-CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEE
T ss_pred ceeecCCCC-CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhc
Confidence 344444443 368999999999999999999999 443 1110 0 00
Q ss_pred -ceecCCCCC--------------cchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCc
Q psy5297 67 -CFVPCDSAT--------------ISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTST 130 (185)
Q Consensus 67 -~~v~~~~~~--------------~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~ 130 (185)
.|+++.+.. ...++++++.+++.+..++++++||+|||||++||+++ .+|++|||||||+++|+
T Consensus 92 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~ 171 (538)
T 3ozx_A 92 IQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDV 171 (538)
T ss_dssp CSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred cchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 012111100 11356788899999999999999999999999999999 99999999999666555
Q ss_pred CChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhhccccceeeee
Q psy5297 131 FDGFGMACSIARELASNRQPFTLFATHF-HEIALLSRVIPTFRNVH 175 (185)
Q Consensus 131 ~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~~g~ 175 (185)
.....+.+. ++.+++ |.|||++||+ .++..+||++.++++|.
T Consensus 172 ~~~~~l~~~-l~~l~~--g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 172 RERMNMAKA-IRELLK--NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHH-HHHHCT--TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHH-HHHHhC--CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 544444443 366643 8999999999 88889999999998764
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=3.9e-30 Score=236.14 Aligned_cols=102 Identities=14% Similarity=0.058 Sum_probs=85.3
Q ss_pred HHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CC---CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEe
Q psy5297 81 QIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TE---NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA 155 (185)
Q Consensus 81 ~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~---p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~ 155 (185)
++++.+++.. ..++++.+||||||||++||+++ .+ |+++||||||+|+|+.+...+.+.+ ..+.+ .|.|||++
T Consensus 827 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL-~~L~~-~G~TVIvi 904 (972)
T 2r6f_A 827 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVL-HRLVD-NGDTVLVI 904 (972)
T ss_dssp HHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHH-HHHHH-TTCEEEEE
T ss_pred HHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEE
Confidence 4567778876 67899999999999999999999 65 4999999998888877766666654 67766 59999999
Q ss_pred cChhHHHHhhccccce------eeeeEEEEeccCC
Q psy5297 156 THFHEIALLSRVIPTF------RNVHESKYLYHTN 184 (185)
Q Consensus 156 tH~~~~~~~~d~~~~l------~~g~i~~~~~~~~ 184 (185)
||+.+....||++++| ++|++++.+++++
T Consensus 905 sHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~e 939 (972)
T 2r6f_A 905 EHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEE 939 (972)
T ss_dssp CCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHH
T ss_pred cCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHH
Confidence 9995555789999999 7899999988654
No 65
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=1.6e-29 Score=232.57 Aligned_cols=102 Identities=14% Similarity=0.047 Sum_probs=84.5
Q ss_pred HHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CC---CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEe
Q psy5297 81 QIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TE---NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA 155 (185)
Q Consensus 81 ~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~---p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~ 155 (185)
++++.+|+.. ..++++.+|||||+||++||+++ .+ |+++||||||+|+|+.+...+...+ +.+.+ .|.|||++
T Consensus 787 ~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL-~~L~~-~G~TVIvI 864 (916)
T 3pih_A 787 QVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVL-HRLVD-RGNTVIVI 864 (916)
T ss_dssp HHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHH-HHHHH-TTCEEEEE
T ss_pred HHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHh-cCCEEEEE
Confidence 4456677764 35788999999999999999999 65 4799999998888887777666654 77766 59999999
Q ss_pred cChhHHHHhhccccce------eeeeEEEEeccCC
Q psy5297 156 THFHEIALLSRVIPTF------RNVHESKYLYHTN 184 (185)
Q Consensus 156 tH~~~~~~~~d~~~~l------~~g~i~~~~~~~~ 184 (185)
||+.+....||++++| ++|++++.|++++
T Consensus 865 ~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpee 899 (916)
T 3pih_A 865 EHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEE 899 (916)
T ss_dssp CCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred eCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHH
Confidence 9996566679999999 8999999998865
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=1.3e-29 Score=233.40 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=84.8
Q ss_pred HHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CC---CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEe
Q psy5297 81 QIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TE---NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA 155 (185)
Q Consensus 81 ~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~---p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~ 155 (185)
++++.+++.. ..++++.+||||||||++||+++ .+ |+++||||||+|+|+.+...+.+.+ ..+++ .|.|||++
T Consensus 845 ~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL-~~L~~-~G~TVIvi 922 (993)
T 2ygr_A 845 RTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVI-NGLVD-KGNTVIVI 922 (993)
T ss_dssp HHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHH-HHHHH-TTCEEEEE
T ss_pred HHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEE
Confidence 4566778876 67899999999999999999999 65 4999999998888777766666654 66766 59999999
Q ss_pred cChhHHHHhhccccce------eeeeEEEEeccCC
Q psy5297 156 THFHEIALLSRVIPTF------RNVHESKYLYHTN 184 (185)
Q Consensus 156 tH~~~~~~~~d~~~~l------~~g~i~~~~~~~~ 184 (185)
||+.+....||++++| ++|++++.+++++
T Consensus 923 sHdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~e 957 (993)
T 2ygr_A 923 EHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPED 957 (993)
T ss_dssp CCCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHH
T ss_pred cCCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHH
Confidence 9995555789999999 6899999987654
No 67
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=1e-29 Score=232.14 Aligned_cols=102 Identities=9% Similarity=0.020 Sum_probs=84.2
Q ss_pred HHHhhcCccc-ccccCcCccHHHHHHHHHHHHhC-CC---CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEe
Q psy5297 81 QIFTRVGAAD-SQYRGISTFMMEMKETATVIKKC-TE---NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA 155 (185)
Q Consensus 81 ~~l~~~~l~~-~~~~~~~~lS~g~~q~~~ia~~l-~~---p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~ 155 (185)
++++.+++.. ..++++.+||||||||+.||+++ .+ |+++||||||+|+|+.+...+.+.+ +.+++ .|.|||++
T Consensus 712 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL-~~L~~-~G~tVIvi 789 (842)
T 2vf7_A 712 DTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQL-VKLVD-AGNTVIAV 789 (842)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHH-HHHHH-TTCEEEEE
T ss_pred HHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHh-CCCEEEEE
Confidence 4556677766 46889999999999999999999 75 7999999998888877776666654 67776 59999999
Q ss_pred cChhHHHHhhccccce------eeeeEEEEeccCC
Q psy5297 156 THFHEIALLSRVIPTF------RNVHESKYLYHTN 184 (185)
Q Consensus 156 tH~~~~~~~~d~~~~l------~~g~i~~~~~~~~ 184 (185)
||+.+....||++++| ++|++++.+++++
T Consensus 790 sHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~e 824 (842)
T 2vf7_A 790 EHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAE 824 (842)
T ss_dssp CCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred cCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHH
Confidence 9994444889999999 7999999987654
No 68
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.96 E-value=5.6e-29 Score=225.93 Aligned_cols=169 Identities=40% Similarity=0.679 Sum_probs=136.8
Q ss_pred ceEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHH
Q psy5297 4 GTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIF 83 (185)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l 83 (185)
+.+.+++++||+++. +.+++++|++|+ |++++|+||||||||||||+|+.+.+.++.|.++|+....+..+++++
T Consensus 549 ~~i~i~~~rHP~le~--~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~ 623 (765)
T 1ewq_A 549 DRLQIRAGRHPVVER--RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIY 623 (765)
T ss_dssp SSEEEEEECCTTGGG--TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEE
T ss_pred CcEEEEEeECceEcc--CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhh
Confidence 458899999999875 457899999998 999999999999999999999888777899988988765566666666
Q ss_pred hhcCcccccccCcCccHHHHHHHHHHHHhC---CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhH
Q psy5297 84 TRVGAADSQYRGISTFMMEMKETATVIKKC---TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHE 160 (185)
Q Consensus 84 ~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l---~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~ 160 (185)
..++..+.. ...+|.++++++.+++++ .+|+++|||||++||+++|+....+.+++.+.+ .|+++|++||+.+
T Consensus 624 ~~~~~~d~l---~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~-~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 624 TRIGASDDL---AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFE 699 (765)
T ss_dssp EECCC---------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCHH
T ss_pred ccCCHHHHH---HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh-CCCEEEEEeCCHH
Confidence 666665543 235678899998888765 799999999999999999988876666677776 6899999999977
Q ss_pred HHHhhccccceeeeeEEEEeccC
Q psy5297 161 IALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 161 ~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
+..++ ...+.++++......+
T Consensus 700 l~~~~--~~~v~n~~~~~~~~~~ 720 (765)
T 1ewq_A 700 LTALG--LPRLKNLHVAAREEAG 720 (765)
T ss_dssp HHTCC--CTTEEEEEEEEECCSS
T ss_pred HHHhh--hhcceEEEEEEEEcCC
Confidence 77787 6678888887765543
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=4.1e-27 Score=198.09 Aligned_cols=84 Identities=14% Similarity=-0.008 Sum_probs=68.1
Q ss_pred ccCcCccHHHHHHHHHHHHhCC-------CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297 93 YRGISTFMMEMKETATVIKKCT-------ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS 165 (185)
Q Consensus 93 ~~~~~~lS~g~~q~~~ia~~l~-------~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~ 165 (185)
++++++||+||+||++||+++. +|+++||||||+|+|+.....+... +..+++ .|.|||++||+.+....|
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~-l~~l~~-~g~tvi~itH~~~~~~~~ 351 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASV-LKELER-LNKVIVFITHDREFSEAF 351 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHH-HHGGGG-SSSEEEEEESCHHHHTTC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHh-CCCEEEEEecchHHHHhC
Confidence 5688899999999999988763 9999999999776666555555443 366665 599999999996668889
Q ss_pred ccccceeeeeEEE
Q psy5297 166 RVIPTFRNVHESK 178 (185)
Q Consensus 166 d~~~~l~~g~i~~ 178 (185)
|++++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999864
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.94 E-value=1.9e-27 Score=201.95 Aligned_cols=80 Identities=15% Similarity=0.072 Sum_probs=63.9
Q ss_pred cHHHHHHHHHHHHhC-CCC--eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce----
Q psy5297 99 FMMEMKETATVIKKC-TEN--SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF---- 171 (185)
Q Consensus 99 lS~g~~q~~~ia~~l-~~p--~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l---- 171 (185)
+|+|||||++||+++ .+| ++||||||++|+|+.....+.+. ++.+. .+.+||+|||+.++...||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~-L~~l~--~~~~vi~itH~~~~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQ-LSRLA--DTRQVLVVTHLAQIAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHH-HHHHT--TTSEEEEECSCHHHHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHh--CCCEEEEEeCcHHHHhhcCeEEEEEEec
Confidence 599999999999999 999 99999999666555544444443 35554 389999999997777899999999
Q ss_pred eeeeEEEEec
Q psy5297 172 RNVHESKYLY 181 (185)
Q Consensus 172 ~~g~i~~~~~ 181 (185)
++|+++....
T Consensus 373 ~~G~~~~~~~ 382 (415)
T 4aby_A 373 EDGRTVSHVR 382 (415)
T ss_dssp ETTEEEEEEE
T ss_pred cCCceEEEEE
Confidence 8999876543
No 71
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-28 Score=212.91 Aligned_cols=149 Identities=9% Similarity=0.026 Sum_probs=109.5
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHHHH-------------HhhCceecCCCCC------cch------
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSVFL-------------AQIGCFVPCDSAT------ISV------ 78 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~~~-------------~~~g~~v~~~~~~------~~~------ 78 (185)
.+.++||++++|++++|+||||||||||+|+| |..... ..++ |+||.... +++
T Consensus 127 ~y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~-~vpq~~~l~~~~~~~tv~eni~~ 205 (460)
T 2npi_A 127 MLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIF-TVPGCISATPISDILDAQLPTWG 205 (460)
T ss_dssp HHHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSS-SCSSCCEEEECCSCCCTTCTTCS
T ss_pred hhhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCee-eeccchhhcccccccchhhhhcc
Confidence 44689999999999999999999999999999 322211 1234 78886511 112
Q ss_pred ------------hhHHHhhcCcccccccCcCccHHHHHHHHHHHHh--C-CCCeE----EEEeC-CCCCCCcCChhHHHH
Q psy5297 79 ------------VDQIFTRVGAADSQYRGISTFMMEMKETATVIKK--C-TENSL----VIIDE-LGRGTSTFDGFGMAC 138 (185)
Q Consensus 79 ------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~--l-~~p~l----lllDE-P~~g~~~~d~~~~~~ 138 (185)
+..+++.+|+.+..+ +.+||+|||||+++|++ + .+|++ +|||| |++++|+. ..
T Consensus 206 ~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-----~~ 278 (460)
T 2npi_A 206 QSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-----LA 278 (460)
T ss_dssp CBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-----CH
T ss_pred cccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-----HH
Confidence 222344455555444 78999999999999999 9 99999 99999 97776665 23
Q ss_pred HHHHHHHhcCCCeEEEecCh-h------HHHHhhcc-----cccee-eeeEEEEeccC
Q psy5297 139 SIARELASNRQPFTLFATHF-H------EIALLSRV-----IPTFR-NVHESKYLYHT 183 (185)
Q Consensus 139 ~il~~l~~~~~~~vii~tH~-~------~~~~~~d~-----~~~l~-~g~i~~~~~~~ 183 (185)
.+.+.+++ .+.+++++||+ . ++..+||+ +++|+ +|+++ .++++
T Consensus 279 ~l~~l~~~-~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~ 334 (460)
T 2npi_A 279 ELHHIIEK-LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDV 334 (460)
T ss_dssp HHHHHHHH-TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHH
T ss_pred HHHHHHHH-hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHH
Confidence 23233333 58899999998 5 55689999 99999 99988 66543
No 72
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.94 E-value=1.7e-27 Score=180.29 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=85.0
Q ss_pred eEEEeeCCceeEEEEccCCCcHHHHHHHH--HHHHH--HHhhCceecCCCCCcchh----hHH------HhhcCcccccc
Q psy5297 28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSI--GVSVF--LAQIGCFVPCDSATISVV----DQI------FTRVGAADSQY 93 (185)
Q Consensus 28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~i--G~i~~--~~~~g~~v~~~~~~~~~~----~~~------l~~~~l~~~~~ 93 (185)
|+||++++|++++|+||||||||||+|++ |...+ ....+ +++|++...... +.+ ....+.....+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 79 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRG-LMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVD 79 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHH-HHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHH-HhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 68999999999999999999999999976 11100 00113 666665322211 111 11223322222
Q ss_pred cCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCCh----------------hHHHHHHHHHHHhcCCCeEEEec
Q psy5297 94 RGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDG----------------FGMACSIARELASNRQPFTLFAT 156 (185)
Q Consensus 94 ~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~----------------~~~~~~il~~l~~~~~~~vii~t 156 (185)
.....|+|+|||++||+++ .+|++++||||++++++... ..+.. ++..++++ |.|+|++|
T Consensus 80 -~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~-~l~~l~~~-g~tvi~vt 156 (171)
T 4gp7_A 80 -ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKK-SIKGLQRE-GFRYVYIL 156 (171)
T ss_dssp -SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHH-HSTTHHHH-TCSEEEEE
T ss_pred -CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhh-hhhhHHhc-CCcEEEEe
Confidence 3345699999999999999 99999999999555444311 11122 23445553 99999999
Q ss_pred Ch-hHHHH
Q psy5297 157 HF-HEIAL 163 (185)
Q Consensus 157 H~-~~~~~ 163 (185)
|+ .++.+
T Consensus 157 H~~~~~~~ 164 (171)
T 4gp7_A 157 NSPEEVEE 164 (171)
T ss_dssp CSHHHHHH
T ss_pred CCHHHhhh
Confidence 99 55544
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.91 E-value=9.2e-25 Score=166.75 Aligned_cols=127 Identities=13% Similarity=0.032 Sum_probs=84.5
Q ss_pred eEEEEccCCCcHHHHHHHH-HHHHHH---------------HhhCceecCCCCCcchhhHHHhhcCcc--cccccCcCcc
Q psy5297 38 FNLVTGPNMGGKSTYIRSI-GVSVFL---------------AQIGCFVPCDSATISVVDQIFTRVGAA--DSQYRGISTF 99 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i-G~i~~~---------------~~~g~~v~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~l 99 (185)
.++|+||||||||||+|+| |...+. ..++ |++|+. +..++++..++.. +..++++.+|
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l 77 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTG-FRIITT---EGKKKIFSSKFFTSKKLVGSYGVNV 77 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCE-EEEEET---TCCEEEEEETTCCCSSEETTEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeE-EEeecC---cHHHHHHHhhcCCccccccccccCc
Confidence 5899999999999999999 443210 1112 444432 1112222222222 2457778899
Q ss_pred HHHHHHHHHHHHh-----C-CCCeEEEEeC--CCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecC---h-hHHHHhhcc
Q psy5297 100 MMEMKETATVIKK-----C-TENSLVIIDE--LGRGTSTFDGFGMACSIARELASNRQPFTLFATH---F-HEIALLSRV 167 (185)
Q Consensus 100 S~g~~q~~~ia~~-----l-~~p~llllDE--P~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH---~-~~~~~~~d~ 167 (185)
|+|||||+++|++ + .+|++++||| | ++.+|...... +.+.+.+ .+.++|++|| + ..+..+|++
T Consensus 78 SgG~~qr~~la~aa~~~~l~~~p~llilDEigp---~~~ld~~~~~~-l~~~l~~-~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 78 QYFEELAIPILERAYREAKKDRRKVIIIDEIGK---MELFSKKFRDL-VRQIMHD-PNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCST---TGGGCHHHHHH-HHHHHTC-TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred CHHHHHHHHHHhhccccccccCCCEEEEeCCCC---cccCCHHHHHH-HHHHHhc-CCCeEEEEEccCCCchHHHHHHhc
Confidence 9999999999996 7 9999999999 9 55566554433 4355554 5777888885 6 677788887
Q ss_pred ccceeeeeEE
Q psy5297 168 IPTFRNVHES 177 (185)
Q Consensus 168 ~~~l~~g~i~ 177 (185)
.+|++.
T Consensus 153 ----~~~~i~ 158 (178)
T 1ye8_A 153 ----PGAVLI 158 (178)
T ss_dssp ----TTCEEE
T ss_pred ----CCcEEE
Confidence 445554
No 74
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.90 E-value=7.9e-26 Score=176.73 Aligned_cols=125 Identities=13% Similarity=0.137 Sum_probs=76.4
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHH-----------------HhhCceecCCC-CCc-chhhHH
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-----------------AQIGCFVPCDS-ATI-SVVDQI 82 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-----------------~~~g~~v~~~~-~~~-~~~~~~ 82 (185)
.+.+++|+ ++|++++|+||||||||||+|+|...... ..++ |+||++ ..+ ......
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig-~v~q~~~enl~~~~~~~ 86 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLG-FLPGTLNEKIDPYLRPL 86 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCC-SSCC------CTTTHHH
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceE-EecCCHHHHHHHHHHHH
Confidence 35688885 78999999999999999999999433321 1234 777765 111 111111
Q ss_pred Hhhc-Cc--ccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 83 FTRV-GA--ADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 83 l~~~-~l--~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
...+ .. .......... ..|||||++|||++ .+|+++||||||+| ....+.+.+ ..+ + .|.||| +|||
T Consensus 87 ~~~~~~~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l-~~l-~-~g~tii-vtHd 157 (208)
T 3b85_A 87 HDALRDMVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFL-TRL-G-FGSKMV-VTGD 157 (208)
T ss_dssp HHHHTTTSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHH-TTB-C-TTCEEE-EEEC
T ss_pred HHHHHHhccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHH-HHh-c-CCCEEE-EECC
Confidence 1111 10 0000000111 22999999999999 99999999999777 444444433 444 3 488999 9999
Q ss_pred hH
Q psy5297 159 HE 160 (185)
Q Consensus 159 ~~ 160 (185)
.+
T Consensus 158 ~~ 159 (208)
T 3b85_A 158 IT 159 (208)
T ss_dssp --
T ss_pred HH
Confidence 33
No 75
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=3.7e-23 Score=170.99 Aligned_cols=83 Identities=11% Similarity=0.102 Sum_probs=63.5
Q ss_pred cccCcCccHHHHHHHHHHHHhC-----CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhc
Q psy5297 92 QYRGISTFMMEMKETATVIKKC-----TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSR 166 (185)
Q Consensus 92 ~~~~~~~lS~g~~q~~~ia~~l-----~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d 166 (185)
.+.++++||+|||||++||+++ .+|+++|||||++++|+.....+.+.+ ..+. .+.++|++||+.++...||
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l-~~~~--~~~~vi~~tH~~~~~~~~d 289 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLL-KENS--KHTQFIVITHNKIVMEAAD 289 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHH-HHHT--TTSEEEEECCCTTGGGGCS
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhc--CCCeEEEEECCHHHHhhCc
Confidence 4556789999999999999987 468999999996666655544444433 5553 3789999999976778999
Q ss_pred cc--cceeeeeEE
Q psy5297 167 VI--PTFRNVHES 177 (185)
Q Consensus 167 ~~--~~l~~g~i~ 177 (185)
++ +++.+|.-.
T Consensus 290 ~~~~v~~~~g~s~ 302 (322)
T 1e69_A 290 LLHGVTMVNGVSA 302 (322)
T ss_dssp EEEEEEESSSCEE
T ss_pred eEEEEEEeCCEEE
Confidence 87 777777643
No 76
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.88 E-value=1.9e-22 Score=167.82 Aligned_cols=80 Identities=13% Similarity=0.028 Sum_probs=61.8
Q ss_pred cccCcCccHHHHHH------HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297 92 QYRGISTFMMEMKE------TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL 164 (185)
Q Consensus 92 ~~~~~~~lS~g~~q------~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~ 164 (185)
.++++.+||+|||| |+++|+++ .+|+++|||||++|+|+.....+... ++.+.+ .+.+||++||+.++...
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~-l~~~~~-~~~~vi~~sH~~~~~~~ 319 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITI-MERYLK-KIPQVILVSHDEELKDA 319 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHH-HHHTGG-GSSEEEEEESCGGGGGG
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHh-cCCEEEEEEChHHHHHh
Confidence 35678999999999 56777888 89999999999666655554444443 355554 47899999999778889
Q ss_pred hccccceee
Q psy5297 165 SRVIPTFRN 173 (185)
Q Consensus 165 ~d~~~~l~~ 173 (185)
||+++.|+.
T Consensus 320 ~d~~~~l~~ 328 (339)
T 3qkt_A 320 ADHVIRISL 328 (339)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEEe
Confidence 999998863
No 77
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.87 E-value=9.3e-25 Score=169.67 Aligned_cols=149 Identities=12% Similarity=0.040 Sum_probs=79.5
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHH-----------------HHhhCceecCCCCCcch---hh
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-----------------LAQIGCFVPCDSATISV---VD 80 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~-----------------~~~~g~~v~~~~~~~~~---~~ 80 (185)
+.+++++| .++++|++++|+||||||||||+|+|....- ...++ |+||++..++. .+
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVD-YHFIDPTRFQQLIDQG 83 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTT-BEECCHHHHHHHHHTT
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCe-eEecCHHHHHHHHhcC
Confidence 34678999 6889999999999999999999999943220 11244 77776532211 00
Q ss_pred HHH---------hhcCccc-----ccccC--c---CccHHHHHHHHHHHH---hC-CCCeEEEEeCCCCCCCcC-ChhHH
Q psy5297 81 QIF---------TRVGAAD-----SQYRG--I---STFMMEMKETATVIK---KC-TENSLVIIDELGRGTSTF-DGFGM 136 (185)
Q Consensus 81 ~~l---------~~~~l~~-----~~~~~--~---~~lS~g~~q~~~ia~---~l-~~p~llllDEP~~g~~~~-d~~~~ 136 (185)
++. ...+... ...+. + -++.+.+.++-.... ++ .+|++++||||++|++.. |....
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~ 163 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQ 163 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHH
Confidence 000 0001100 00000 0 223333333322222 45 799999999997777543 32222
Q ss_pred HHH--HHHHHHhcCCCeEEEecCh-hHHHHhhcccccee
Q psy5297 137 ACS--IARELASNRQPFTLFATHF-HEIALLSRVIPTFR 172 (185)
Q Consensus 137 ~~~--il~~l~~~~~~~vii~tH~-~~~~~~~d~~~~l~ 172 (185)
.+. +++.+.++.+.|++++||| .++.++||+++++.
T Consensus 164 ~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 164 RRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 221 2456654458999999999 88899999999985
No 78
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.87 E-value=8.5e-25 Score=186.41 Aligned_cols=148 Identities=17% Similarity=0.110 Sum_probs=109.4
Q ss_pred eeeeceEEEeeCCce--------------------eEEEEccCCCcHHHHHHHH--------HHHHHH----HhhCceec
Q psy5297 23 SYIPNDVYFKSGEVS--------------------FNLVTGPNMGGKSTYIRSI--------GVSVFL----AQIGCFVP 70 (185)
Q Consensus 23 ~~il~~isl~i~~g~--------------------~~~l~G~NGsGKSTLlk~i--------G~i~~~----~~~g~~v~ 70 (185)
+.+++++||++++|+ +++|+||||||||||+|+| |.+.+. ...+ +++
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~-~v~ 114 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER-HPY 114 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC-EEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeE-Eec
Confidence 458999999999999 9999999999999999999 222221 1124 777
Q ss_pred CCCC--Ccc------------hhhHHHhhcCcccccccCcCccHHH--HHHHHHHHHhC-C----------CCeEEEEeC
Q psy5297 71 CDSA--TIS------------VVDQIFTRVGAADSQYRGISTFMME--MKETATVIKKC-T----------ENSLVIIDE 123 (185)
Q Consensus 71 ~~~~--~~~------------~~~~~l~~~~l~~~~~~~~~~lS~g--~~q~~~ia~~l-~----------~p~llllDE 123 (185)
|.+. .++ .++++++.+++.+.. ..+. +|+| |+||+.+|+++ . +|+++++||
T Consensus 115 q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDE 192 (413)
T 1tq4_A 115 KHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNE 192 (413)
T ss_dssp ECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH
T ss_pred cccccCCeeehHhhcccchHHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCc
Confidence 7641 111 356778888876543 3333 9999 99999999998 7 999999999
Q ss_pred CCCCCCcCChhHHHHHHHHHHH-----hc---CCCeEEEecCh-hH--HHHhhcccc-ceeee
Q psy5297 124 LGRGTSTFDGFGMACSIARELA-----SN---RQPFTLFATHF-HE--IALLSRVIP-TFRNV 174 (185)
Q Consensus 124 P~~g~~~~d~~~~~~~il~~l~-----~~---~~~~vii~tH~-~~--~~~~~d~~~-~l~~g 174 (185)
|++|+|+.....+.+.+ +.+. +. ...+++++||+ .+ +.++||++. .+..|
T Consensus 193 PtsgLD~~~~~~l~~~l-~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 193 ADGEPQTFDKEKVLQDI-RLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HTTCCTTCCHHHHHHHH-HHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred ccccCCHHHHHHHHHHH-HHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 99999998877776655 3432 21 13568889997 54 899999885 44443
No 79
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.84 E-value=4.7e-24 Score=175.34 Aligned_cols=133 Identities=10% Similarity=-0.062 Sum_probs=95.1
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCc--ch--------------hhHHHhhcC
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATI--SV--------------VDQIFTRVG 87 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~--~~--------------~~~~l~~~~ 87 (185)
.+|+++||++++|++++|+||||||||||+++|.... .+.+..|++|.+..+ ++ +.+.++.+
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~~~~~~~i~~~- 191 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTY- 191 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGGTTSGGGGGGGTTCSCEEEEEECHHHHHHHHHT-
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEecCccccccccHHHHhhccCccccHHHHHHHHHH-
Confidence 4899999999999999999999999999999995443 444445777765222 11 12223322
Q ss_pred cccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhc
Q psy5297 88 AADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSR 166 (185)
Q Consensus 88 l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d 166 (185)
+.+..+ ...||+||||| ||++ .+|++|| |+++|+.....+.. .||+......||
T Consensus 192 L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----------------ltH~~~~~~~aD 246 (305)
T 2v9p_A 192 LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----------------LHSRVQTFRFEQ 246 (305)
T ss_dssp TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----------------GTTTEEEEECCC
T ss_pred hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----------------HhCCHHHHHhCC
Confidence 232233 67999999999 9999 9999999 78877766544421 288855567899
Q ss_pred cccceeeeeEEEEeccCC
Q psy5297 167 VIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 167 ~~~~l~~g~i~~~~~~~~ 184 (185)
++ +|++|+++..+++++
T Consensus 247 ~i-vl~~G~iv~~g~~~e 263 (305)
T 2v9p_A 247 PC-TDESGEQPFNITDAD 263 (305)
T ss_dssp CC-CCC---CCCCCCHHH
T ss_pred EE-EEeCCEEEEeCCHHH
Confidence 99 999999998877653
No 80
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.82 E-value=4.8e-21 Score=167.81 Aligned_cols=141 Identities=12% Similarity=-0.037 Sum_probs=101.1
Q ss_pred EeeCCceeEEEEccCCCcHHHHHHHHH-HHHHHHh-hCceecCCCCCcchhhHH---------HhhcCcccccccCcCcc
Q psy5297 31 FKSGEVSFNLVTGPNMGGKSTYIRSIG-VSVFLAQ-IGCFVPCDSATISVVDQI---------FTRVGAADSQYRGISTF 99 (185)
Q Consensus 31 l~i~~g~~~~l~G~NGsGKSTLlk~iG-~i~~~~~-~g~~v~~~~~~~~~~~~~---------l~~~~l~~~~~~~~~~l 99 (185)
..+.+|++++|+||||||||||++++. .....+. +..+.++++.. .....+ +...++....+..+.+|
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~-~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~L 354 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA-QLLRNAYSWGMDFEEMERQNLLKIVCAYPESA 354 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHH-HHHHHHHTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHH-HHHHHHHHcCCCHHHHHhCCCEEEEEeccccC
Confidence 378899999999999999999999994 3322211 12245665421 111111 11234445667788999
Q ss_pred HHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcC-----ChhHHHHHHHHHHHhcCCCeEEEecChh-----------HHH
Q psy5297 100 MMEMKETATVIKKC-TENSLVIIDELGRGTSTF-----DGFGMACSIARELASNRQPFTLFATHFH-----------EIA 162 (185)
Q Consensus 100 S~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~-----d~~~~~~~il~~l~~~~~~~vii~tH~~-----------~~~ 162 (185)
|+||+|++.+|+++ .+|+++++| |+++++.. ....+.. +++.+++ .|.|+|++||+. .+.
T Consensus 355 S~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~-ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~~l~ 431 (525)
T 1tf7_A 355 GLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG-VTGYAKQ-EEITGLFTNTSDQFMGAHSITDSHIS 431 (525)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH-HHHHHHH-TTCEEEEEEECSSSSCCCSSCSSCCT
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH-HHHHHHh-CCCEEEEEECcccccCcccccCcccc
Confidence 99999999999999 999999999 97777765 3233333 3466665 699999999974 356
Q ss_pred Hhhccccceeeee
Q psy5297 163 LLSRVIPTFRNVH 175 (185)
Q Consensus 163 ~~~d~~~~l~~g~ 175 (185)
.+||++++|++|+
T Consensus 432 ~~~D~vi~L~~ge 444 (525)
T 1tf7_A 432 TITDTIILLQYVE 444 (525)
T ss_dssp TTCSEEEEEEEEE
T ss_pred eeeeEEEEEEEEE
Confidence 7899999999886
No 81
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.82 E-value=1.2e-20 Score=153.66 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=90.9
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH-HHHH-H-hhCceecCCCC---------------Ccch------
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV-SVFL-A-QIGCFVPCDSA---------------TISV------ 78 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~-i~~~-~-~~g~~v~~~~~---------------~~~~------ 78 (185)
..+|+++++.+++|++++|+||||||||||+++|.. +... + .+. |+..+.. .+..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~-~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~ 100 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG-LAMLEESVEETAEDLIGLHNRVRLRQSDSLKR 100 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE-EEESSSCHHHHHHHHHHHHTTCCGGGCHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE-EEeCcCCHHHHHHHHHHHHcCCChhhcccccc
Confidence 457999999999999999999999999999999943 3221 1 111 2221110 0000
Q ss_pred -----------hhHHHhhcCcccccccCcCccHHHH-HHHHHHHHhC-CCCeEEEEeCCCCCCCc---CCh-hHHHHHH-
Q psy5297 79 -----------VDQIFTRVGAADSQYRGISTFMMEM-KETATVIKKC-TENSLVIIDELGRGTST---FDG-FGMACSI- 140 (185)
Q Consensus 79 -----------~~~~l~~~~l~~~~~~~~~~lS~g~-~q~~~ia~~l-~~p~llllDEP~~g~~~---~d~-~~~~~~i- 140 (185)
++.+++..++ .....+..+|.++ +|++. ++++ .+|+++++|||++..++ .|. ......+
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~ 177 (296)
T 1cr0_A 101 EIIENGKFDQWFDELFGNDTF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMT 177 (296)
T ss_dssp HHHHHTHHHHHHHHHHSSSCE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCCE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHH
Confidence 0111111111 1222335567776 66666 7777 99999999999884433 444 3332222
Q ss_pred -HHHHHhcCCCeEEEecChh-----------------------HHHHhhccccceeeeeE
Q psy5297 141 -ARELASNRQPFTLFATHFH-----------------------EIALLSRVIPTFRNVHE 176 (185)
Q Consensus 141 -l~~l~~~~~~~vii~tH~~-----------------------~~~~~~d~~~~l~~g~i 176 (185)
++.++++.+++||++||+. .+..+||++++|++|+.
T Consensus 178 ~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 178 KLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 4556554699999999983 56789999999998875
No 82
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.81 E-value=3.5e-22 Score=156.66 Aligned_cols=141 Identities=8% Similarity=-0.132 Sum_probs=85.3
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHH------------------HHhhCceecCCCCCcch-------
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF------------------LAQIGCFVPCDSATISV------- 78 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~------------------~~~~g~~v~~~~~~~~~------- 78 (185)
.-|+|+||++++|++++|+||||||||||+|+|..... ...++ |+||++..+..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~ 89 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVD-YYFIDKTIFEDKLKNEDF 89 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTT-BEECCHHHHHHHHHTTCE
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCe-EEECCHHHHHHhhhccch
Confidence 47899999999999999999999999999999943321 01223 55654421110
Q ss_pred -----------------hhHHHhhcCcccccccCcCccHHHHHHHHHH-----HHhC-CCCeEEEEeCCCCCCCcCChhH
Q psy5297 79 -----------------VDQIFTRVGAADSQYRGISTFMMEMKETATV-----IKKC-TENSLVIIDELGRGTSTFDGFG 135 (185)
Q Consensus 79 -----------------~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~i-----a~~l-~~p~llllDEP~~g~~~~d~~~ 135 (185)
++++++..... .. ..++||||+||+++ ++++ ..|++++||||+++.+......
T Consensus 90 l~~~~~~~~~~g~~~~~i~~~l~~~~~~-il---~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~ 165 (218)
T 1z6g_A 90 LEYDNYANNFYGTLKSEYDKAKEQNKIC-LF---EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQ 165 (218)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHTTCEE-EE---EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHH
T ss_pred hhhhhcccccCCCcHHHHHHHHhCCCcE-EE---EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHH
Confidence 11111111100 01 14689999999999 7788 8999999999977777665555
Q ss_pred HHHHHHHHHHhc------CCCeEEEecCh-hHHHHhhccccc
Q psy5297 136 MACSIARELASN------RQPFTLFATHF-HEIALLSRVIPT 170 (185)
Q Consensus 136 ~~~~il~~l~~~------~~~~vii~tH~-~~~~~~~d~~~~ 170 (185)
+.+.+ ..+.++ .....|+++|+ .++...+++++.
T Consensus 166 i~~~l-~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 166 IQKRM-EQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp HHHHH-HHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 55544 333221 36788999998 778888887764
No 83
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.81 E-value=2.7e-22 Score=166.65 Aligned_cols=130 Identities=16% Similarity=0.038 Sum_probs=88.5
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCcccccccCcCccH-HHH
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFM-MEM 103 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS-~g~ 103 (185)
++++++|.+++|++++|+||||||||||+|+|.... ....|.....+...+. +... ...++-++ +||
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~-~~~~g~i~i~~~~e~~----------~~~~-~~~i~~~~ggg~ 227 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI-PKEERIISIEDTEEIV----------FKHH-KNYTQLFFGGNI 227 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS-CTTSCEEEEESSCCCC----------CSSC-SSEEEEECBTTB
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCcEEEECCeeccc----------cccc-hhEEEEEeCCCh
Confidence 688999999999999999999999999999993321 1122211111111110 0000 00000011 899
Q ss_pred HHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeeee
Q psy5297 104 KETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175 (185)
Q Consensus 104 ~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g~ 175 (185)
+||+++++++ .+|+++++||| ++ ....+ .++.+.. .+.+++++||.......|||+++|.+|+
T Consensus 228 ~~r~~la~aL~~~p~ilildE~---~~----~e~~~-~l~~~~~-g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 228 TSADCLKSCLRMRPDRIILGEL---RS----SEAYD-FYNVLCS-GHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp CHHHHHHHHTTSCCSEEEECCC---CS----THHHH-HHHHHHT-TCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHhhhCCCEEEEcCC---Ch----HHHHH-HHHHHhc-CCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 9999999999 99999999999 44 12333 3466654 3457999999966888999999998875
No 84
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.81 E-value=2.4e-20 Score=153.12 Aligned_cols=138 Identities=14% Similarity=0.174 Sum_probs=95.0
Q ss_pred ceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH-------------------------H--HHhhCceecCCCC-Ccc-
Q psy5297 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV-------------------------F--LAQIGCFVPCDSA-TIS- 77 (185)
Q Consensus 27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~-------------------------~--~~~~g~~v~~~~~-~~~- 77 (185)
.++||++++|++++|+|||||||||+++.|.... + ...++ |++|.+. ..+
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~-~v~q~~~~~~~~ 169 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCE-IVVAEGDKAKAA 169 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCE-EECCC--CCCHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCce-EEEecCCccCHH
Confidence 5789999999999999999999999999992110 1 11344 8888765 332
Q ss_pred --hhhHH------------HhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe--EEEEeCCCCCCCcCChhHHHHHH
Q psy5297 78 --VVDQI------------FTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS--LVIIDELGRGTSTFDGFGMACSI 140 (185)
Q Consensus 78 --~~~~~------------l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~--llllDEP~~g~~~~d~~~~~~~i 140 (185)
+.+++ ++.+|+.+..++.+.+|| +||+++|+++ .+|+ +++|| |++|+ |.....
T Consensus 170 ~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl---D~~~~~--- 239 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL---NMLPQA--- 239 (302)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG---GGHHHH---
T ss_pred HHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc---CHHHHH---
Confidence 22222 233455555667778899 9999999999 9999 99999 95554 443322
Q ss_pred HHHHHhcCCCeEEEecCh-h---------HHHHhhccccceeeeeE
Q psy5297 141 ARELASNRQPFTLFATHF-H---------EIALLSRVIPTFRNVHE 176 (185)
Q Consensus 141 l~~l~~~~~~~vii~tH~-~---------~~~~~~d~~~~l~~g~i 176 (185)
+.+.++.+.++|++||. . ........+.++..|+.
T Consensus 240 -~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 240 -REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp -HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 34444368999999993 2 22334566777877764
No 85
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.80 E-value=6.2e-20 Score=144.75 Aligned_cols=140 Identities=13% Similarity=0.003 Sum_probs=74.2
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHHHHH-HHhhC-ceecCCCCCcchhhHHHhhcCcc-------------ccc----
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-LAQIG-CFVPCDSATISVVDQIFTRVGAA-------------DSQ---- 92 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~-~~~~g-~~v~~~~~~~~~~~~~l~~~~l~-------------~~~---- 92 (185)
.+++|++++|+||||||||||+++|..... ....+ .|+..+.. ..........++.. +..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 104 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVV 104 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHTTTCCHHHHHHTTSEEEEC------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC-HHHHHHHHHHcCCChHHHhhcCCEEEEEcccccc
Confidence 678999999999999999999999942212 21111 12222111 00011111111110 000
Q ss_pred -------ccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCc-CChhHHH---HHHHHHHHhcCCCeEEEecCh-h
Q psy5297 93 -------YRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTST-FDGFGMA---CSIARELASNRQPFTLFATHF-H 159 (185)
Q Consensus 93 -------~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~-~d~~~~~---~~il~~l~~~~~~~vii~tH~-~ 159 (185)
.......+.++.........- .+|+++++|||+++++. .|..... ..+++.+++ .|+|||++||+ .
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii~vtH~~~ 183 (251)
T 2ehv_A 105 GLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTILTTEAPD 183 (251)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC-
T ss_pred ccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCCC
Confidence 001111222332222222223 89999999999766641 1222222 223466665 59999999998 6
Q ss_pred HH---------HHhh-ccccceee
Q psy5297 160 EI---------ALLS-RVIPTFRN 173 (185)
Q Consensus 160 ~~---------~~~~-d~~~~l~~ 173 (185)
++ ..+| |++++|++
T Consensus 184 ~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 184 PQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp ---CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCcccccccChhhEeeeEEEEEee
Confidence 66 5788 99999964
No 86
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=6.6e-21 Score=166.91 Aligned_cols=146 Identities=16% Similarity=0.109 Sum_probs=90.1
Q ss_pred ceeeeceEEE-eeCCceeEEEEccCCCcHHHHHHH--H-HHHHH-------------------HHhhCceecCCCCCcch
Q psy5297 22 VSYIPNDVYF-KSGEVSFNLVTGPNMGGKSTYIRS--I-GVSVF-------------------LAQIGCFVPCDSATISV 78 (185)
Q Consensus 22 ~~~il~~isl-~i~~g~~~~l~G~NGsGKSTLlk~--i-G~i~~-------------------~~~~g~~v~~~~~~~~~ 78 (185)
+..+|++++| ++++|++++|+||||||||||+++ + |.... ...+| |++|+.....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g-~~~q~~~~~~- 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFG-WDLAKLVDEG- 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGT-CCHHHHHHTT-
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC-CChHHhhccC-
Confidence 4568999999 999999999999999999999999 4 43321 12233 5555431100
Q ss_pred hhHHHhhcCcc--cccccCcCccHHHHHHHHHHHHhC--CCCeEEEEeCCCCCCCc--CChhHHHHH--HHHHHHhcCCC
Q psy5297 79 VDQIFTRVGAA--DSQYRGISTFMMEMKETATVIKKC--TENSLVIIDELGRGTST--FDGFGMACS--IARELASNRQP 150 (185)
Q Consensus 79 ~~~~l~~~~l~--~~~~~~~~~lS~g~~q~~~ia~~l--~~p~llllDEP~~g~~~--~d~~~~~~~--il~~l~~~~~~ 150 (185)
.+. .+... +....-...+..+.. .-.+...+ .+|+++++|||++.... +|....... +++.+++ .|.
T Consensus 102 --~l~-~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~ 176 (525)
T 1tf7_A 102 --KLF-ILDASPDPEGQEVVGGFDLSAL-IERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGA 176 (525)
T ss_dssp --SEE-EEECCCCSSCCSCCSSHHHHHH-HHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTC
T ss_pred --cEE-EEecCcccchhhhhcccCHHHH-HHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCC
Confidence 000 00000 001111234444432 33344444 68999999999765433 343333222 3566766 599
Q ss_pred eEEEecCh-hH---------HHHhhccccceeee
Q psy5297 151 FTLFATHF-HE---------IALLSRVIPTFRNV 174 (185)
Q Consensus 151 ~vii~tH~-~~---------~~~~~d~~~~l~~g 174 (185)
|+|++||+ .+ +..+||++++|++|
T Consensus 177 tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 177 TTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp EEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred EEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 99999998 65 35669999999983
No 87
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.79 E-value=3.9e-19 Score=149.11 Aligned_cols=85 Identities=9% Similarity=-0.037 Sum_probs=66.0
Q ss_pred ccCcC-ccHHHHHHHHHHHHhCC----------CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHH
Q psy5297 93 YRGIS-TFMMEMKETATVIKKCT----------ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEI 161 (185)
Q Consensus 93 ~~~~~-~lS~g~~q~~~ia~~l~----------~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~ 161 (185)
+++++ .+|+||||+++||+++. +|+++|||||+++ +|...... +++.+.+ .+.|+|++||..+
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~---LD~~~~~~-l~~~l~~-~~qt~i~~th~~~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAE---LDPHRRQY-LLDLAAS-VPQAIVTGTELAP- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGC---CCHHHHHH-HHHHHHH-SSEEEEEESSCCT-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCcccc---CCHHHHHH-HHHHHHh-cCcEEEEEEeccc-
Confidence 34566 79999999999999873 8999999999555 55444433 3355554 3468999999633
Q ss_pred HHhhccccceeeeeEEEEeccCCC
Q psy5297 162 ALLSRVIPTFRNVHESKYLYHTNV 185 (185)
Q Consensus 162 ~~~~d~~~~l~~g~i~~~~~~~~~ 185 (185)
.||++++|++|++...++++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999988764
No 88
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.78 E-value=2.3e-21 Score=162.09 Aligned_cols=150 Identities=9% Similarity=0.018 Sum_probs=97.1
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH---------------HHHHhhC-----------ceecCCCC-
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS---------------VFLAQIG-----------CFVPCDSA- 74 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i---------------~~~~~~g-----------~~v~~~~~- 74 (185)
..+++++ |++.+|++++|+||||||||||+++| |.. .+...++ .++++...
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~ 137 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRP 137 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSC
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCC
Confidence 4589999 99999999999999999999999999 211 0111111 13333221
Q ss_pred CcchhhHHHhhcCcccc-c---------ccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHH
Q psy5297 75 TISVVDQIFTRVGAADS-Q---------YRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAREL 144 (185)
Q Consensus 75 ~~~~~~~~l~~~~l~~~-~---------~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l 144 (185)
....+...+..+.+.+. . -+.+++||+|| |++++| +.+|++ ++|+++.....+.+. ++++
T Consensus 138 ~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la--l~~p~~------t~Gldp~~~~~l~~l-ler~ 207 (347)
T 2obl_A 138 ALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA--SGEPDV------RGGFPPSVFSSLPKL-LERA 207 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH--TTCCCC------BTTBCHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH--cCCCCc------ccCCCHHHHHHHHHH-HHHH
Confidence 11112222221222111 1 15688999999 899998 566666 555555443333332 3554
Q ss_pred Hh-cCCC-----eEEEecChhHHHHhhccccceeeeeEEEEeccCC
Q psy5297 145 AS-NRQP-----FTLFATHFHEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 145 ~~-~~~~-----~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
.+ +.|. ||+++|||.+ ..+||++..+.+|+++..++.++
T Consensus 208 ~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 208 GPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp EECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred hCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHH
Confidence 43 2477 8999999955 78899999999999998876554
No 89
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.78 E-value=4.8e-20 Score=146.54 Aligned_cols=130 Identities=13% Similarity=0.131 Sum_probs=75.8
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH----H---HHhhCceecCCCCC--cchhhH----------
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV----F---LAQIGCFVPCDSAT--ISVVDQ---------- 81 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~----~---~~~~g~~v~~~~~~--~~~~~~---------- 81 (185)
+.+.+++|+||++++|++++|+||||||||||+|+|.... + ...++ |++++... ++..+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~-~v~~d~~~~~l~~~~~~~~~~~~~~~ 88 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVV-ILSQDRFYKVLTAEQKAKALKGQYNF 88 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEE-EEEGGGGBCCCCHHHHHHHHTTCCCT
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceE-EEeCCcCccccCHhHhhhhhccCCCC
Confidence 4567999999999999999999999999999999994321 0 11223 67776411 111111
Q ss_pred ----------HHhhcC-cccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCC
Q psy5297 82 ----------IFTRVG-AADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQ 149 (185)
Q Consensus 82 ----------~l~~~~-l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~ 149 (185)
+.+.+. +.+....++..||+||+||+.+ +++ .+|+++|+||| ....+.. + .+..+
T Consensus 89 ~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~---~~~~~~~-----l----~~~~~ 155 (245)
T 2jeo_A 89 DHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGI---LVFYSQE-----I----RDMFH 155 (245)
T ss_dssp TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECT---TTTTSHH-----H----HTTCS
T ss_pred CCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCc---cccccHH-----H----HHhcC
Confidence 111111 2233456778899999999977 455 88999999999 4433321 1 12137
Q ss_pred CeEEEecCh-hHHHHh
Q psy5297 150 PFTLFATHF-HEIALL 164 (185)
Q Consensus 150 ~~vii~tH~-~~~~~~ 164 (185)
.+|+++||+ ..+.+.
T Consensus 156 ~~i~v~th~~~~~~r~ 171 (245)
T 2jeo_A 156 LRLFVDTDSDVRLSRR 171 (245)
T ss_dssp EEEEEECCHHHHHHHH
T ss_pred eEEEEECCHHHHHHHH
Confidence 899999997 666543
No 90
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.78 E-value=2.7e-19 Score=149.98 Aligned_cols=138 Identities=14% Similarity=0.186 Sum_probs=95.4
Q ss_pred ceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH-------------------------H--HHhhCceecCCCC-Ccc-
Q psy5297 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV-------------------------F--LAQIGCFVPCDSA-TIS- 77 (185)
Q Consensus 27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~-------------------------~--~~~~g~~v~~~~~-~~~- 77 (185)
.++||++++|++++|+|||||||||+++.|.... + ...++ |++|.+. ..+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~-~v~q~~~~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCE-IVVAEGDKAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCE-EECCSSSSCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeE-EEEecccccChh
Confidence 4689999999999999999999999999992210 1 11344 8888765 332
Q ss_pred --hhhHH------------HhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCe--EEEEeCCCCCCCcCChhHHHHHH
Q psy5297 78 --VVDQI------------FTRVGAADSQYRGISTFMMEMKETATVIKKC-TENS--LVIIDELGRGTSTFDGFGMACSI 140 (185)
Q Consensus 78 --~~~~~------------l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~--llllDEP~~g~~~~d~~~~~~~i 140 (185)
+.+++ ++.+|+.+..++.+.+|| +||+.||+++ .+|+ +++|| |++| +|.....
T Consensus 227 ~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg---lD~~~~~--- 296 (359)
T 2og2_A 227 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG---LNMLPQA--- 296 (359)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG---GGGHHHH---
T ss_pred hhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC---CCHHHHH---
Confidence 22222 233455555567778899 9999999999 9999 99999 9555 4543332
Q ss_pred HHHHHhcCCCeEEEecChh----------HHHHhhccccceeeeeE
Q psy5297 141 ARELASNRQPFTLFATHFH----------EIALLSRVIPTFRNVHE 176 (185)
Q Consensus 141 l~~l~~~~~~~vii~tH~~----------~~~~~~d~~~~l~~g~i 176 (185)
+.+.++.+.|+|++||.. .....+..+.++..|+.
T Consensus 297 -~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 297 -REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 344443689999999942 22344566777777754
No 91
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.77 E-value=5.9e-21 Score=157.47 Aligned_cols=129 Identities=13% Similarity=0.059 Sum_probs=85.8
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHHHHHH-H---HhhCceecCCCCCcc----------------------hhhHHHhhc
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVF-L---AQIGCFVPCDSATIS----------------------VVDQIFTRV 86 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~-~---~~~g~~v~~~~~~~~----------------------~~~~~l~~~ 86 (185)
+++|++++|+||||||||||+|+|....- . .+++ +++|+...++ .+.++++.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~-~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l 165 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVD-LVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSV 165 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEE-EEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEE-EEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 78999999999999999999999954322 1 1344 8888764332 122334444
Q ss_pred CcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh--hHHHH
Q psy5297 87 GAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF--HEIAL 163 (185)
Q Consensus 87 ~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~--~~~~~ 163 (185)
+ .+..+..+.+||+||+||+++|+++ .+|+++|+|||+...++.+. .+.+..+.+ |+++|+ .....
T Consensus 166 ~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~---------~l~~~~D~~-I~V~a~~~~~~~R 234 (312)
T 3aez_A 166 K-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTL---------MVSDLFDFS-LYVDARIEDIEQW 234 (312)
T ss_dssp H-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSC---------CGGGGCSEE-EEEEECHHHHHHH
T ss_pred C-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchH---------HHHHhcCcE-EEEECCHHHHHHH
Confidence 4 3334567789999999999999999 99999999999766554221 122223444 555554 33345
Q ss_pred hhccccceee
Q psy5297 164 LSRVIPTFRN 173 (185)
Q Consensus 164 ~~d~~~~l~~ 173 (185)
+++|...+++
T Consensus 235 ~i~R~~~~rd 244 (312)
T 3aez_A 235 YVSRFLAMRT 244 (312)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 6666554443
No 92
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.77 E-value=3.4e-19 Score=164.15 Aligned_cols=100 Identities=12% Similarity=0.040 Sum_probs=84.1
Q ss_pred HhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CCCe--EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 83 FTRVGAADS-QYRGISTFMMEMKETATVIKKC-TENS--LVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 83 l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~p~--llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
+..+|+... .++++.+|||||+||++||+++ .+|+ ++||||||+|+++.+...+.+.+ +.+++ .|.|||++|||
T Consensus 448 L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L-~~L~~-~G~TvivVtHd 525 (916)
T 3pih_A 448 LVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTL-KKLRD-LGNTVIVVEHD 525 (916)
T ss_dssp HHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHH-HHTTT-TTCEEEEECCC
T ss_pred HHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHH-HHHHh-cCCEEEEEeCC
Confidence 344677653 6899999999999999999999 8776 99999998888888877776654 77766 59999999999
Q ss_pred hHHHHhhccccce------eeeeEEEEeccCC
Q psy5297 159 HEIALLSRVIPTF------RNVHESKYLYHTN 184 (185)
Q Consensus 159 ~~~~~~~d~~~~l------~~g~i~~~~~~~~ 184 (185)
.+....||++++| ++|++++.|++++
T Consensus 526 ~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e 557 (916)
T 3pih_A 526 EEVIRNADHIIDIGPGGGTNGGRVVFQGTVDE 557 (916)
T ss_dssp HHHHHTCSEEEEEESSSGGGCSEEEEEECHHH
T ss_pred HHHHHhCCEEEEEcCCcccCCCEEEEeechhh
Confidence 6556679999999 8999999998754
No 93
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.77 E-value=8.2e-19 Score=161.44 Aligned_cols=101 Identities=12% Similarity=0.085 Sum_probs=86.1
Q ss_pred HhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CC--CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 83 FTRVGAADS-QYRGISTFMMEMKETATVIKKC-TE--NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 83 l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~--p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
+..+|++.. +++.+.+|||||+||+.||+++ .+ |++|||||||+|+++.+...+.+.+ +.+++ .|.|||++||+
T Consensus 488 L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L-~~Lr~-~G~TVIvVeHd 565 (972)
T 2r6f_A 488 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATL-KSMRD-LGNTLIVVEHD 565 (972)
T ss_dssp HHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHH-HHHHT-TTCEEEEECCC
T ss_pred hhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHH-HHHHh-CCCEEEEEecC
Confidence 556788754 7999999999999999999999 76 5999999998888888877776654 77876 69999999999
Q ss_pred hHHHHhhccccce------eeeeEEEEeccCCC
Q psy5297 159 HEIALLSRVIPTF------RNVHESKYLYHTNV 185 (185)
Q Consensus 159 ~~~~~~~d~~~~l------~~g~i~~~~~~~~~ 185 (185)
.+....||++++| ++|++++.|+++++
T Consensus 566 l~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 566 EDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEV 598 (972)
T ss_dssp HHHHHSCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred HHHHHhCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence 5556689999999 79999999998764
No 94
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.77 E-value=1.2e-18 Score=135.65 Aligned_cols=149 Identities=9% Similarity=-0.009 Sum_probs=88.7
Q ss_pred eeeceEEE-eeCCceeEEEEccCCCcHHHHHHHHHHHHHHHh-hCceecCCCCCcchhhHHHhhcCccc--c-------c
Q psy5297 24 YIPNDVYF-KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IGCFVPCDSATISVVDQIFTRVGAAD--S-------Q 92 (185)
Q Consensus 24 ~il~~isl-~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~-~g~~v~~~~~~~~~~~~~l~~~~l~~--~-------~ 92 (185)
..|+++.. .+++|++++|+||||||||||++.+........ -..|+..+.. ...+...+..++... . .
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES-RDSIIRQAKQFNWDFEEYIEKKLIII 88 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC-HHHHHHHHHHTTCCCGGGBTTTEEEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC-HHHHHHHHHHhcchHHHHhhCCEEEE
Confidence 35677776 788999999999999999999999953222211 1113332221 111111111222110 0 0
Q ss_pred c---------cCcCccHHHHHHHHHHHHhC-CCCe--EEEEeCCCCCC--CcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 93 Y---------RGISTFMMEMKETATVIKKC-TENS--LVIIDELGRGT--STFDGFGMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 93 ~---------~~~~~lS~g~~q~~~ia~~l-~~p~--llllDEP~~g~--~~~d~~~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
+ ......|.++.++...+.+. .+|+ ++++|||++++ ++.....+... +..+.++.+.++|++||+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~-l~~~~~~~~~~vi~~~h~ 167 (235)
T 2w0m_A 89 DALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYY-LKRVLNKWNFTIYATSQY 167 (235)
T ss_dssp ECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHH-HHHHHHHTTEEEEEEEC-
T ss_pred eccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHH-HHHHHHhCCCeEEEEecc
Confidence 0 00123477887766655555 7899 99999997665 33222333333 345544468999999997
Q ss_pred h-H--------HHHhhccccceeee
Q psy5297 159 H-E--------IALLSRVIPTFRNV 174 (185)
Q Consensus 159 ~-~--------~~~~~d~~~~l~~g 174 (185)
. . +..+||++++|++.
T Consensus 168 ~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 168 AITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp ----------CHHHHCSEEEEEEEE
T ss_pred CcccccccccchheeeeEEEEEEEE
Confidence 4 2 77899999999865
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.76 E-value=4.5e-19 Score=142.79 Aligned_cols=121 Identities=19% Similarity=0.181 Sum_probs=82.0
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHh-hCc---------eecCCCCCcchhhHHHhhcCcccccc
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IGC---------FVPCDSATISVVDQIFTRVGAADSQY 93 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~-~g~---------~v~~~~~~~~~~~~~l~~~~l~~~~~ 93 (185)
.++++++ +++|++++|+||||||||||+++|....- .. .|. |+++....+ +.+ ..++++
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-~~~~G~I~~~g~~i~~~~~~~~~~--v~q--~~~gl~---- 83 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPIEYVFKHKKSI--VNQ--REVGED---- 83 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-HHCCCEEEEEESSCCSCCCCSSSE--EEE--EEBTTT----
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-CCCCCEEEEcCCcceeecCCccee--eeH--HHhCCC----
Confidence 4889988 79999999999999999999999944321 22 221 222221100 000 012211
Q ss_pred cCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcccccee
Q psy5297 94 RGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFR 172 (185)
Q Consensus 94 ~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~ 172 (185)
...| +++|++++ .+|+++++||| + |.......+ +.. + .|.+|+++||+.++...|||++.|.
T Consensus 84 --~~~l------~~~la~aL~~~p~illlDEp---~---D~~~~~~~l-~~~-~-~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 84 --TKSF------ADALRAALREDPDVIFVGEM---R---DLETVETAL-RAA-E-TGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp --BSCH------HHHHHHHHHHCCSEEEESCC---C---SHHHHHHHH-HHH-H-TTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred --HHHH------HHHHHHHHhhCCCEEEeCCC---C---CHHHHHHHH-HHH-c-cCCEEEEEeCcchHHHHHHHHhhhc
Confidence 1333 78999999 99999999999 5 555554433 443 3 5999999999966788899987764
No 96
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.75 E-value=8.6e-19 Score=129.92 Aligned_cols=80 Identities=13% Similarity=0.044 Sum_probs=63.4
Q ss_pred ccccCcCccHHHHHHHHHHH------HhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHH
Q psy5297 91 SQYRGISTFMMEMKETATVI------KKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIAL 163 (185)
Q Consensus 91 ~~~~~~~~lS~g~~q~~~ia------~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~ 163 (185)
..++++++||+|||||+++| +++ .+|+++||||||+|+|+.....+.+. +..+.+ .|.+||++||+.++..
T Consensus 50 ~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~-~~~tiiivsH~~~~~~ 127 (148)
T 1f2t_B 50 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITI-MERYLK-KIPQVILVSHDEELKD 127 (148)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHH-HHHTGG-GSSEEEEEESCGGGGG
T ss_pred cccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHH-HHHHHc-cCCEEEEEEChHHHHH
Confidence 36788999999999999876 788 89999999999666655544444443 355544 4889999999977788
Q ss_pred hhcccccee
Q psy5297 164 LSRVIPTFR 172 (185)
Q Consensus 164 ~~d~~~~l~ 172 (185)
+||++++|+
T Consensus 128 ~~d~ii~l~ 136 (148)
T 1f2t_B 128 AADHVIRIS 136 (148)
T ss_dssp GCSEEEEEE
T ss_pred hCCEEEEEE
Confidence 999999994
No 97
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.75 E-value=2.4e-18 Score=157.36 Aligned_cols=100 Identities=9% Similarity=0.014 Sum_probs=86.3
Q ss_pred HhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CCC--eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 83 FTRVGAADS-QYRGISTFMMEMKETATVIKKC-TEN--SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 83 l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~p--~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
+..+|+.+. +++++.+|||||+||+.||+++ .+| .++||||||+++++.+...+.+.+ +.+++ .|.|||++||+
T Consensus 363 L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l-~~L~~-~G~TVIvVeHd 440 (842)
T 2vf7_A 363 LLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSAL-ENLKR-GGNSLFVVEHD 440 (842)
T ss_dssp HHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHH-HHHHT-TTCEEEEECCC
T ss_pred HHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHH-HHHHH-cCCEEEEEcCC
Confidence 456788754 7999999999999999999999 888 599999998888888877776654 78876 69999999999
Q ss_pred hHHHHhhccccce------eeeeEEEEeccCC
Q psy5297 159 HEIALLSRVIPTF------RNVHESKYLYHTN 184 (185)
Q Consensus 159 ~~~~~~~d~~~~l------~~g~i~~~~~~~~ 184 (185)
.++...||++++| ++|++++.+++++
T Consensus 441 l~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~ 472 (842)
T 2vf7_A 441 LDVIRRADWLVDVGPEAGEKGGEILYSGPPEG 472 (842)
T ss_dssp HHHHTTCSEEEEECSSSGGGCCSEEEEECGGG
T ss_pred HHHHHhCCEEEEeCCCcccCCCEEEEecCHHH
Confidence 6667789999999 7999999998765
No 98
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.75 E-value=4.5e-20 Score=158.52 Aligned_cols=148 Identities=7% Similarity=-0.039 Sum_probs=101.8
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH--------------H----HHHH-----------HHhhCceecCCC
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------------G----VSVF-----------LAQIGCFVPCDS 73 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i--------------G----~i~~-----------~~~~g~~v~~~~ 73 (185)
..+++++ |++.+|++++|+||||||||||+++| | .+.- ...++ |++|..
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~-~v~q~~ 222 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVV-IAAPAD 222 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEE-EEECTT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEE-EEECCC
Confidence 4589999 99999999999999999999999999 2 1211 11234 888853
Q ss_pred C----CcchhhHHH---hhcCc--cc--ccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHH
Q psy5297 74 A----TISVVDQIF---TRVGA--AD--SQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIAR 142 (185)
Q Consensus 74 ~----~~~~~~~~l---~~~~l--~~--~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~ 142 (185)
. .+++.+.+. +.+.. .+ ..-..++.||+|| ||+++| +.+|++ ++|+++.....+.+.+ +
T Consensus 223 ~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA--l~~p~~------t~glD~~~~~~l~~ll-~ 292 (438)
T 2dpy_A 223 VSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA--IGEPPA------TKGYPPSVFAKLPALV-E 292 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH--TTCCCC------SSSCCTTHHHHHHHHH-T
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH--hCCCcc------cccCCHHHHHHHHHHH-H
Confidence 2 122222221 11111 00 1123477899999 999998 777877 7777776655554433 5
Q ss_pred HHHh---cCCC-----eEEEecChhHHHHhhccccceeeeeEEEEeccC
Q psy5297 143 ELAS---NRQP-----FTLFATHFHEIALLSRVIPTFRNVHESKYLYHT 183 (185)
Q Consensus 143 ~l~~---~~~~-----~vii~tH~~~~~~~~d~~~~l~~g~i~~~~~~~ 183 (185)
++.+ +.|. ||+++|||.. ..+||+++++.+|+++..++++
T Consensus 293 r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~ 340 (438)
T 2dpy_A 293 RAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLA 340 (438)
T ss_dssp TCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHH
T ss_pred HHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHH
Confidence 5443 1264 8999999955 7899999999999999887654
No 99
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.74 E-value=1.1e-18 Score=160.90 Aligned_cols=100 Identities=12% Similarity=0.014 Sum_probs=83.0
Q ss_pred HhhcCcccc-cccCcCccHHHHHHHHHHHHhC-CC--CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 83 FTRVGAADS-QYRGISTFMMEMKETATVIKKC-TE--NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 83 l~~~~l~~~-~~~~~~~lS~g~~q~~~ia~~l-~~--p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
+..+|+... +++++.+|||||+||++||+++ .+ |++|||||||+|+++.+...+.+. ++.+++ .|.|||++||+
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~-L~~Lr~-~G~TVIvVeHd 582 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIET-LTRLRD-LGNTLIVVEHD 582 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHH-HHHHHH-TTCEEEEECCC
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHH-HHHHHH-cCCEEEEECCC
Confidence 455677654 7899999999999999999999 77 589999999777777776666654 477876 69999999999
Q ss_pred hHHHHhhccccce------eeeeEEEEeccCC
Q psy5297 159 HEIALLSRVIPTF------RNVHESKYLYHTN 184 (185)
Q Consensus 159 ~~~~~~~d~~~~l------~~g~i~~~~~~~~ 184 (185)
.+....||++++| ++|++++.|++++
T Consensus 583 l~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e 614 (993)
T 2ygr_A 583 EDTIEHADWIVDIGPGAGEHGGRIVHSGPYDE 614 (993)
T ss_dssp HHHHHTCSEEEEECSSSGGGCCSCCEEECHHH
T ss_pred HHHHHhCCEEEEecCccccCCCEEEEeeCHHH
Confidence 5556689999999 7899999997654
No 100
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.73 E-value=2.1e-18 Score=134.37 Aligned_cols=143 Identities=11% Similarity=0.021 Sum_probs=77.1
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHH-HHHHHhh------CceecCCCC-CcchhhHHHhhcCcccc-c--c-cCcCcc
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGV-SVFLAQI------GCFVPCDSA-TISVVDQIFTRVGAADS-Q--Y-RGISTF 99 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~-i~~~~~~------g~~v~~~~~-~~~~~~~~l~~~~l~~~-~--~-~~~~~l 99 (185)
.+++|++++|+||||||||||+++|.. +...... ..|+..... ....+..+...+++... . + .....+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 578999999999999999999999943 2221110 113333221 11123344444444311 0 0 001122
Q ss_pred HHH-HHHHHHHHHhC--------CCCeEEEEeCCCCCCCcCC-----hh-------HHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 100 MME-MKETATVIKKC--------TENSLVIIDELGRGTSTFD-----GF-------GMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 100 S~g-~~q~~~ia~~l--------~~p~llllDEP~~g~~~~d-----~~-------~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
+.+ +++.+..+..+ .+|+++++|||++++++.- .. .+... +..+.++.|.|||++||.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~-l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLAD-LHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHH-HHHHHHHHTCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHH-HHHHHHHCCCeEEEEeec
Confidence 333 33323333322 3899999999955543310 01 12222 344444369999999994
Q ss_pred -h----HHHHhhccccceeeee
Q psy5297 159 -H----EIALLSRVIPTFRNVH 175 (185)
Q Consensus 159 -~----~~~~~~d~~~~l~~g~ 175 (185)
. .+...||+++++++|+
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp C---------CCSEEEEEEECT
T ss_pred ccCcchhhHhhceEEEEEEecC
Confidence 3 3778999999998753
No 101
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.71 E-value=1.1e-17 Score=135.22 Aligned_cols=129 Identities=14% Similarity=0.102 Sum_probs=82.9
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-----------hhCceecCCCCCcc---h----------
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-----------QIGCFVPCDSATIS---V---------- 78 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-----------~~g~~v~~~~~~~~---~---------- 78 (185)
.+++. .+++|++++|+||||||||||++.+....-.+ ....|+..+..... .
T Consensus 21 d~~lg----gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~ 96 (279)
T 1nlf_A 21 DYVLP----NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSA 96 (279)
T ss_dssp CEEET----TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCH
T ss_pred heeEC----CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcCh
Confidence 34564 46799999999999999999999994322111 01124444331111 1
Q ss_pred --hhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCC--CCCcCChhHHHHHH--HHHHHhcCCCe
Q psy5297 79 --VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGR--GTSTFDGFGMACSI--ARELASNRQPF 151 (185)
Q Consensus 79 --~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~--g~~~~d~~~~~~~i--l~~l~~~~~~~ 151 (185)
...+++.+.+.+..++++..+|+|+++++ +++ .+|+++++|||++ +.+..+.....+.+ +..+.++.|+|
T Consensus 97 ~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t 173 (279)
T 1nlf_A 97 EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS 173 (279)
T ss_dssp HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE
T ss_pred hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE
Confidence 11224455566666778999999998765 344 7899999999987 65443332222222 45554436999
Q ss_pred EEEecCh
Q psy5297 152 TLFATHF 158 (185)
Q Consensus 152 vii~tH~ 158 (185)
||+++|+
T Consensus 174 vi~i~H~ 180 (279)
T 1nlf_A 174 IVFLHHA 180 (279)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 9999997
No 102
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.71 E-value=2.2e-19 Score=145.21 Aligned_cols=110 Identities=16% Similarity=0.117 Sum_probs=69.4
Q ss_pred eEEEEccCCCcHHHHHHHH--------HHHHHHH----------hhCceecCCCC---CcchhhH--------------H
Q psy5297 38 FNLVTGPNMGGKSTYIRSI--------GVSVFLA----------QIGCFVPCDSA---TISVVDQ--------------I 82 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i--------G~i~~~~----------~~g~~v~~~~~---~~~~~~~--------------~ 82 (185)
.++|+||||||||||+|+| |.+.+.+ .++ |+||+.. .+++.+. .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~-~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIG-HVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEE-ESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeE-EEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 3899999999999999999 4444422 233 7787652 2222221 1
Q ss_pred HhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecC
Q psy5297 83 FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATH 157 (185)
Q Consensus 83 l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH 157 (185)
+..+...+..+..+.+||+||+||+++||++ +.++++|||++|+++.| .+ +++.+.+ . .++|++.|
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal--~~lllldep~~gL~~lD----~~-~l~~L~~-~-~~vI~Vi~ 148 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVH--CCLYFISPTGHSLRPLD----LE-FMKHLSK-V-VNIIPVIA 148 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCC--EEEEEECCCSSSCCHHH----HH-HHHHHHT-T-SEEEEEET
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheee--eeeEEEecCCCcCCHHH----HH-HHHHHHh-c-CcEEEEEe
Confidence 1112223345667789999999999999986 24999999988887776 22 3466665 3 66666655
No 103
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.70 E-value=1.8e-18 Score=132.99 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=79.5
Q ss_pred ceeEEEEccCCCcHHHHHHHHHHHHHHHh-----------------hCceecCCCCCcchhhHHHhhcCcc-------cc
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-----------------IGCFVPCDSATISVVDQIFTRVGAA-------DS 91 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~i~~~~~-----------------~g~~v~~~~~~~~~~~~~l~~~~l~-------~~ 91 (185)
|++++|+||||||||||+++|....-... +| |++|+... ....+..++.. ..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~~~~~~~~~~~~ig-~~~~~~~g---~~~~l~~~~~~~~~~~~~~~ 76 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIG-FDVVTLSG---TRGPLSRVGLEPPPGKRECR 76 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEE-EEEEETTS---CEEEEEECCCCCCSSSCCEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCCEEEcCEecchhHhhhceEE-EEEEeccc---ceehhhcccccCCccccccc
Confidence 68999999999999999999943322211 11 33332100 00112222211 12
Q ss_pred cccCcCccHHHHHHHHHH-HH---hC-CCCeEEEEeC--CCCCCCcCChhHHHHHHHHHHHhcCCCeEEE----ecChhH
Q psy5297 92 QYRGISTFMMEMKETATV-IK---KC-TENSLVIIDE--LGRGTSTFDGFGMACSIARELASNRQPFTLF----ATHFHE 160 (185)
Q Consensus 92 ~~~~~~~lS~g~~q~~~i-a~---~l-~~p~llllDE--P~~g~~~~d~~~~~~~il~~l~~~~~~~vii----~tH~~~ 160 (185)
..++...+|+||++++.. .+ |+ .+|+++|+|| | ++..|.. ..+.+ +.+.+. ..++|+ +||+..
T Consensus 77 v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~---~~~~~~~-~~~~l-~~~l~~-~~~~ilgti~vsh~~~ 150 (189)
T 2i3b_A 77 VGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGK---MELFSQL-FIQAV-RQTLST-PGTIILGTIPVPKGKP 150 (189)
T ss_dssp SSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCST---TTTTCSH-HHHHH-HHHHHC-SSCCEEEECCCCCSSC
T ss_pred cceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCc---cccccHH-HHHHH-HHHHhC-CCcEEEEEeecCCCCc
Confidence 344556799999988854 33 35 8999999999 6 6666654 33444 444332 334443 449743
Q ss_pred HHHhhccccceeeeeEEEE
Q psy5297 161 IALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 161 ~~~~~d~~~~l~~g~i~~~ 179 (185)
..++|++..+.+|++..-
T Consensus 151 -~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 151 -LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp -CTTHHHHHTTCCSEEEEC
T ss_pred -hHHHHHHeecCCcEEEEe
Confidence 457778777888888653
No 104
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.69 E-value=8.6e-17 Score=124.41 Aligned_cols=148 Identities=12% Similarity=0.079 Sum_probs=92.0
Q ss_pred eeceEEE-eeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCC-CCcchhhHHHhhcCccc--cc-ccCcCcc
Q psy5297 25 IPNDVYF-KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS-ATISVVDQIFTRVGAAD--SQ-YRGISTF 99 (185)
Q Consensus 25 il~~isl-~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~-~~~~~~~~~l~~~~l~~--~~-~~~~~~l 99 (185)
.|+++.. .+++|++++|+||||||||||++.+.. -...-..|+..+. .....+.++...++... .. +-.+.+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTP 85 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECC
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEec
Confidence 3444443 578999999999999999999999955 1111122555443 12223444444444421 11 1123334
Q ss_pred HHHH--HHHHHHHHhC-CC-CeEEEEeCCCCCCCcCCh-----hHHHHHH--HHHHHhcCCCeEEEecCh-h--------
Q psy5297 100 MMEM--KETATVIKKC-TE-NSLVIIDELGRGTSTFDG-----FGMACSI--ARELASNRQPFTLFATHF-H-------- 159 (185)
Q Consensus 100 S~g~--~q~~~ia~~l-~~-p~llllDEP~~g~~~~d~-----~~~~~~i--l~~l~~~~~~~vii~tH~-~-------- 159 (185)
+.++ ++++..++++ .+ |+++++|||++.+++... ..+.+.+ +..+.++.+.++|+++|. .
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~ 165 (220)
T 2cvh_A 86 SDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTK 165 (220)
T ss_dssp TTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCC
T ss_pred CCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccc
Confidence 4443 5677777777 54 999999999877765322 2222221 355554468999999996 4
Q ss_pred -----HHHHhhccccceeee
Q psy5297 160 -----EIALLSRVIPTFRNV 174 (185)
Q Consensus 160 -----~~~~~~d~~~~l~~g 174 (185)
.+...||.+++|++.
T Consensus 166 p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 166 PVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SCCCHHHHHTSSEEEEEEEC
T ss_pred cCCCcceeecCcEEEEEEEe
Confidence 467899999999764
No 105
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.67 E-value=1.2e-16 Score=133.92 Aligned_cols=124 Identities=13% Similarity=0.034 Sum_probs=73.9
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHH-HHHHHHHhhCc-eecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSI-GVSVFLAQIGC-FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATV 109 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~~~~~~g~-~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~i 109 (185)
...+|++++|+|||||||||||++| |.+.-. .-+. +.-.++..+..-.. ...-.........++... +|
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~~~~~~----~~~v~q~~~~~~~~~~~~----~L 189 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEFVHESK----KCLVNQREVHRDTLGFSE----AL 189 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCSCCCCS----SSEEEEEEBTTTBSCHHH----HH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHhhhhcc----ccceeeeeeccccCCHHH----HH
Confidence 5578889999999999999999999 544322 1121 11122211110000 000000001111122222 89
Q ss_pred HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceee
Q psy5297 110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRN 173 (185)
Q Consensus 110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~ 173 (185)
++++ .+|+++++||| + |... .+.+ ..+.+ .|.++++++|+......+||++.|..
T Consensus 190 a~aL~~~PdvillDEp---~---d~e~-~~~~-~~~~~-~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 190 RSALREDPDIILVGEM---R---DLET-IRLA-LTAAE-TGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp HHHTTSCCSEEEESCC---C---SHHH-HHHH-HHHHH-TTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred HHHhhhCcCEEecCCC---C---CHHH-HHHH-HHHHh-cCCEEEEEEccChHHHHHHHHhhhcC
Confidence 9999 99999999999 5 4333 3333 23344 59999999999555688999988754
No 106
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.66 E-value=1.1e-19 Score=140.59 Aligned_cols=123 Identities=11% Similarity=0.014 Sum_probs=83.5
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCc-----c------------------hhhHHHhhcCcc
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATI-----S------------------VVDQIFTRVGAA 89 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~-----~------------------~~~~~l~~~~l~ 89 (185)
.++|++++|+||||||||||+|+|.... ..+++ |++|+.... + .+.++++.+++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~-~~~i~-~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTL-GERVA-LLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRG 80 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHH-GGGEE-EEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh-CCCeE-EEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcC
Confidence 4689999999999999999999995431 11355 777765221 1 133445556666
Q ss_pred cccccCcCccHHHHH----HHHHHHHhC-CCCeEEEEeCCCCC-------CCcCChhHHHHHHHHHHHhcCCCeEEEecC
Q psy5297 90 DSQYRGISTFMMEMK----ETATVIKKC-TENSLVIIDELGRG-------TSTFDGFGMACSIARELASNRQPFTLFATH 157 (185)
Q Consensus 90 ~~~~~~~~~lS~g~~----q~~~ia~~l-~~p~llllDEP~~g-------~~~~d~~~~~~~il~~l~~~~~~~vii~tH 157 (185)
+..+.++.++|.|++ |++.+++++ .+|.++++|||+++ ++......+.+.+.+...+ .|.+++.++|
T Consensus 81 ~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~-~g~t~~~~~~ 159 (211)
T 3asz_A 81 LPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLE-RGRSLEGVVA 159 (211)
T ss_dssp CCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHH-SCCCHHHHHH
T ss_pred CCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHH-hCCCHHHHHH
Confidence 667778889999974 567778888 89999999999666 4443333344433233333 5889988999
Q ss_pred h
Q psy5297 158 F 158 (185)
Q Consensus 158 ~ 158 (185)
+
T Consensus 160 ~ 160 (211)
T 3asz_A 160 Q 160 (211)
T ss_dssp H
T ss_pred H
Confidence 6
No 107
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.63 E-value=4.7e-18 Score=142.51 Aligned_cols=148 Identities=9% Similarity=-0.045 Sum_probs=85.0
Q ss_pred eeceEEEeeCC--ceeEEEEccCCCcHHHHHHHHH------------HHHHHHhh-CceecCCCCCcchh----hH-HH-
Q psy5297 25 IPNDVYFKSGE--VSFNLVTGPNMGGKSTYIRSIG------------VSVFLAQI-GCFVPCDSATISVV----DQ-IF- 83 (185)
Q Consensus 25 il~~isl~i~~--g~~~~l~G~NGsGKSTLlk~iG------------~i~~~~~~-g~~v~~~~~~~~~~----~~-~l- 83 (185)
+...|++++.+ |+.++|+||||||||||+|+|. .+.+..+. +.-..-....+..+ .. .+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDY 236 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence 35679999999 9999999999999999999993 33332111 10000000000000 00 00
Q ss_pred -----hh--cCcccccccCcCccHHHHHHHHHHHHhC--CCCeEEEEeC---CCC------CCCcCChhHHHHHHHHHHH
Q psy5297 84 -----TR--VGAADSQYRGISTFMMEMKETATVIKKC--TENSLVIIDE---LGR------GTSTFDGFGMACSIARELA 145 (185)
Q Consensus 84 -----~~--~~l~~~~~~~~~~lS~g~~q~~~ia~~l--~~p~llllDE---P~~------g~~~~d~~~~~~~il~~l~ 145 (185)
+. +...+..++.+..+|+|++++..+++++ .+|++++||| |+. +++......+.+.+ ..+.
T Consensus 237 ~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l-~~l~ 315 (365)
T 1lw7_A 237 AVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLL-KKLL 315 (365)
T ss_dssp HHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHH-HHHH
T ss_pred HHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHH-HHHH
Confidence 00 0001112233445667777777777765 6899999999 753 44444555555544 3333
Q ss_pred hcCCCeEEEecChhHHHHhhccccceee
Q psy5297 146 SNRQPFTLFATHFHEIALLSRVIPTFRN 173 (185)
Q Consensus 146 ~~~~~~vii~tH~~~~~~~~d~~~~l~~ 173 (185)
++.+.+++++||..+..++++++..+++
T Consensus 316 ~~~~~~ililde~~~~~r~~~~i~~i~~ 343 (365)
T 1lw7_A 316 DKYKVPYIEIESPSYLDRYNQVKAVIEK 343 (365)
T ss_dssp HGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 3358899999987667777777766653
No 108
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.60 E-value=1.2e-16 Score=120.75 Aligned_cols=107 Identities=15% Similarity=0.187 Sum_probs=61.3
Q ss_pred EEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhC---ceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHH
Q psy5297 30 YFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG---CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKET 106 (185)
Q Consensus 30 sl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g---~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~ 106 (185)
+|++++|+.++|+||||+|||||++++...... ..| .|+. ..+++..+. ..++.+..+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~~g~~~~~~~--------~~~~~~~~~---------~~~~~~~~~- 92 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYE-KKGIRGYFFD--------TKDLIFRLK---------HLMDEGKDT- 92 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHH-HSCCCCCEEE--------HHHHHHHHH---------HHHHHTCCS-
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHH-HcCCeEEEEE--------HHHHHHHHH---------HHhcCchHH-
Confidence 355678999999999999999999999554321 122 1211 112221111 001111111
Q ss_pred HHHHHhCCCCeEEEEeCCCC-CCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 107 ATVIKKCTENSLVIIDELGR-GTSTFDGFGMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 107 ~~ia~~l~~p~llllDEP~~-g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
.+...+.+|++|+||||++ ++++.....+.. +++...+ .+.++|++||.
T Consensus 93 -~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~-ll~~~~~-~~~~ii~tsn~ 142 (180)
T 3ec2_A 93 -KFLKTVLNSPVLVLDDLGSERLSDWQRELISY-IITYRYN-NLKSTIITTNY 142 (180)
T ss_dssp -HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHH-HHHHHHH-TTCEEEEECCC
T ss_pred -HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHH-HHHHHHH-cCCCEEEEcCC
Confidence 1222335899999999964 444433333333 3355544 58999999996
No 109
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.57 E-value=6.6e-15 Score=123.93 Aligned_cols=126 Identities=14% Similarity=0.103 Sum_probs=77.1
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCce-ecCCCCCcchhhHHHhhcCc-c-cccccCcCccHH
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCF-VPCDSATISVVDQIFTRVGA-A-DSQYRGISTFMM 101 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~-v~~~~~~~~~~~~~l~~~~l-~-~~~~~~~~~lS~ 101 (185)
++++++ +++|++++|+||||||||||+++|....-....|.. ...++..+. .. ...+. . ......+..|+
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~-~~---~~~~~v~Q~~~g~~~~~~~- 199 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV-FK---HKKSIVNQREVGEDTKSFA- 199 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSC-CC---CSSSEEEEEEBTTTBSCSH-
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhh-hc---cCceEEEeeecCCCHHHHH-
Confidence 455554 689999999999999999999999443221112311 111111110 00 00000 0 00111344563
Q ss_pred HHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccce
Q psy5297 102 EMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTF 171 (185)
Q Consensus 102 g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l 171 (185)
.++++++ .+|+++++||| + |...+...+ +.. . .|.+++.++|+.++...+||++.|
T Consensus 200 -----~~l~~~L~~~pd~illdE~---~---d~e~~~~~l-~~~-~-~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 200 -----DALRAALREDPDVIFVGEM---R---DLETVETAL-RAA-E-TGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp -----HHHHHHTTSCCSEEEESCC---C---SHHHHHHHH-HHH-T-TTCEEEECCCCCSHHHHHHHHHHT
T ss_pred -----HHHHHHhhhCcCEEEECCC---C---CHHHHHHHH-HHH-h-cCCEEEEEECcchHHHHHHHHHHh
Confidence 4788888 99999999999 5 444444333 443 3 589999999986688888887654
No 110
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.55 E-value=2.7e-15 Score=131.13 Aligned_cols=78 Identities=17% Similarity=0.127 Sum_probs=64.1
Q ss_pred cCcCcc-HHHHHHHHHHHHhC-CCC--eEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhcccc
Q psy5297 94 RGISTF-MMEMKETATVIKKC-TEN--SLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIP 169 (185)
Q Consensus 94 ~~~~~l-S~g~~q~~~ia~~l-~~p--~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~ 169 (185)
+++++| ||||+||++||+++ .+| +++|||||++|+|+.....+...+ ..+++ +.+||++||+.++...||+++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l-~~~~~--~~~vi~itH~~~~~~~~d~~~ 468 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQL-SRLAD--TRQVLVVTHLAQIAARAHHHY 468 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHH-HHHHH--HSEEEEECCCHHHHHHSSEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHH-HHHhC--CCEEEEEecCHHHHHhCCEEE
Confidence 457788 99999999999999 999 999999997777776655555544 66664 789999999966777899999
Q ss_pred ceeee
Q psy5297 170 TFRNV 174 (185)
Q Consensus 170 ~l~~g 174 (185)
+|.++
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99654
No 111
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.55 E-value=5.7e-15 Score=115.71 Aligned_cols=143 Identities=13% Similarity=0.046 Sum_probs=75.4
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHHH-HHHH-----hhC-ceecCCCC-CcchhhHHHhhcCcccc--cc--cCcCcc
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGVS-VFLA-----QIG-CFVPCDSA-TISVVDQIFTRVGAADS--QY--RGISTF 99 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i-~~~~-----~~g-~~v~~~~~-~~~~~~~~l~~~~l~~~--~~--~~~~~l 99 (185)
.+++|++++|+||||||||||++.+... .... ..+ .|+..+.. .......++..++.... .+ .....+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 3678999999999999999999999432 2211 111 14433321 12223344455554310 00 011223
Q ss_pred HHHHHH-HHH-HHHhC--CCCeEEEEeCCCCCCCcC-C-----h--h-HHHHHH--HHHHHhcCCCeEEEecCh-hHHHH
Q psy5297 100 MMEMKE-TAT-VIKKC--TENSLVIIDELGRGTSTF-D-----G--F-GMACSI--ARELASNRQPFTLFATHF-HEIAL 163 (185)
Q Consensus 100 S~g~~q-~~~-ia~~l--~~p~llllDEP~~g~~~~-d-----~--~-~~~~~i--l~~l~~~~~~~vii~tH~-~~~~~ 163 (185)
+..+.. .+. +...+ .+|+++++|||++.+++. + . . .....+ +..+.++.+++||+++|. .+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~ 179 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDG 179 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCC
Confidence 333322 222 22233 689999999997766543 0 1 0 022222 334444369999999996 44332
Q ss_pred -------------------hhccccceeee
Q psy5297 164 -------------------LSRVIPTFRNV 174 (185)
Q Consensus 164 -------------------~~d~~~~l~~g 174 (185)
+||.+++|+.+
T Consensus 180 ~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 180 AAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -----------------CCTTCEEEEEEEC
T ss_pred ccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 78999988865
No 112
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.54 E-value=5e-15 Score=112.26 Aligned_cols=80 Identities=10% Similarity=-0.003 Sum_probs=59.9
Q ss_pred cccccCcCccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297 90 DSQYRGISTFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL 164 (185)
Q Consensus 90 ~~~~~~~~~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~ 164 (185)
+...+++..||||||||++||+++ . .|+++|||||++|+|+.....+... +..+.+ +.++|++||+......
T Consensus 56 ~~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~-l~~~~~--~~~~ivith~~~~~~~ 132 (173)
T 3kta_B 56 GKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADL-IKESSK--ESQFIVITLRDVMMAN 132 (173)
T ss_dssp SSSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH-HHHHTT--TSEEEEECSCHHHHTT
T ss_pred CccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHH-HHHhcc--CCEEEEEEecHHHHHh
Confidence 345677899999999999999998 4 3699999999666555444444443 344443 5689999998777889
Q ss_pred hcccccee
Q psy5297 165 SRVIPTFR 172 (185)
Q Consensus 165 ~d~~~~l~ 172 (185)
||+++.+.
T Consensus 133 ad~i~~v~ 140 (173)
T 3kta_B 133 ADKIIGVS 140 (173)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99998654
No 113
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.52 E-value=9.8e-15 Score=119.82 Aligned_cols=116 Identities=18% Similarity=0.122 Sum_probs=70.2
Q ss_pred CceeEEEEccCCCcHHHHHHHHHHHH-------------------------H--HHhhCceecCCCCCcc---hhhHHH-
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGVSV-------------------------F--LAQIGCFVPCDSATIS---VVDQIF- 83 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~i~-------------------------~--~~~~g~~v~~~~~~~~---~~~~~l- 83 (185)
+|++++|+|||||||||++++|+... + ...++ |++|.....+ +.+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~-~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIP-VIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCC-EECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCce-EEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999999999993221 1 12345 8888764333 222221
Q ss_pred ---hh-----cCcccccccCcCccHHHHHHHHHHHHhC-CCCe--EEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeE
Q psy5297 84 ---TR-----VGAADSQYRGISTFMMEMKETATVIKKC-TENS--LVIIDELGRGTSTFDGFGMACSIARELASNRQPFT 152 (185)
Q Consensus 84 ---~~-----~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~--llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~v 152 (185)
.. ++.....+.....++...+||+++||++ .+|+ ++.|| | + ........+ ..+.++.+.|+
T Consensus 180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a---~---t~~~~~~~~-~~~~~~~~~t~ 251 (304)
T 1rj9_A 180 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-A---V---TGQNGLEQA-KKFHEAVGLTG 251 (304)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-T---T---BCTHHHHHH-HHHHHHHCCSE
T ss_pred HHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-H---H---HHHHHHHHH-HHHHHHcCCcE
Confidence 00 1111112222223444458999999999 9999 56666 4 2 223333333 44544358999
Q ss_pred EEecChh
Q psy5297 153 LFATHFH 159 (185)
Q Consensus 153 ii~tH~~ 159 (185)
|++||+.
T Consensus 252 iivTh~d 258 (304)
T 1rj9_A 252 VIVTKLD 258 (304)
T ss_dssp EEEECTT
T ss_pred EEEECCc
Confidence 9999973
No 114
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.51 E-value=9.2e-15 Score=122.05 Aligned_cols=138 Identities=12% Similarity=0.029 Sum_probs=78.7
Q ss_pred eeceE-EEeeCCceeEEEEccCCCcHHHHHHHHHHHHH-HHhh----C--ceecCCCCC-cchhhHHHhhcCcccc----
Q psy5297 25 IPNDV-YFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-LAQI----G--CFVPCDSAT-ISVVDQIFTRVGAADS---- 91 (185)
Q Consensus 25 il~~i-sl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~-~~~~----g--~~v~~~~~~-~~~~~~~l~~~~l~~~---- 91 (185)
.|+++ ++.+++|++++|+||||||||||++++..... .... | .|+...... ...+..+...+++...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ 198 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLK 198 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGG
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhh
Confidence 34444 57889999999999999999999999943321 1111 1 244433321 1222333333333210
Q ss_pred -cccCcCccHHHHHHHHHHHHhC--------CCCeEEEEeCCCCCCCcCC-----hhH----HHHHH--HHHHHhcCCCe
Q psy5297 92 -QYRGISTFMMEMKETATVIKKC--------TENSLVIIDELGRGTSTFD-----GFG----MACSI--ARELASNRQPF 151 (185)
Q Consensus 92 -~~~~~~~lS~g~~q~~~ia~~l--------~~p~llllDEP~~g~~~~d-----~~~----~~~~i--l~~l~~~~~~~ 151 (185)
..-....-|.+++|++.+++.+ .+|+++++|||++++++.. ... +.+.+ +..+.++.+++
T Consensus 199 ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~t 278 (349)
T 1pzn_A 199 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIA 278 (349)
T ss_dssp GEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred CEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcE
Confidence 0000011267888988887765 3799999999976664421 001 22222 34444446999
Q ss_pred EEEecCh-hHHH
Q psy5297 152 TLFATHF-HEIA 162 (185)
Q Consensus 152 vii~tH~-~~~~ 162 (185)
||+++|. ....
T Consensus 279 vii~~h~~~~~~ 290 (349)
T 1pzn_A 279 VFVTNQVQARPD 290 (349)
T ss_dssp EEEEEECC----
T ss_pred EEEEcccccccc
Confidence 9999997 5443
No 115
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.49 E-value=1.1e-15 Score=125.14 Aligned_cols=120 Identities=13% Similarity=0.004 Sum_probs=68.4
Q ss_pred ceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HH-HHHH----------------HhhCceecCCCC---Ccchhh
Q psy5297 22 VSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV-SVFL----------------AQIGCFVPCDSA---TISVVD 80 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~-i~~~----------------~~~g~~v~~~~~---~~~~~~ 80 (185)
++.++++++|++ +|+||||+|||||+++| |. .... ...+ ++++... .+++++
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~-~~~q~~~~~~~ltv~D 82 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEAST-VEIEERGVKLRLTVVD 82 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC------------------------CE-EEEC---CCEEEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEE-EEecCCCcccCcchhh
Confidence 467999999987 99999999999999997 33 2110 1122 5555431 122222
Q ss_pred HH---------------HhhcCcccccccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCC-CCcCChhHHHHHHHHHH
Q psy5297 81 QI---------------FTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRG-TSTFDGFGMACSIAREL 144 (185)
Q Consensus 81 ~~---------------l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g-~~~~d~~~~~~~il~~l 144 (185)
.. ... +.+..++++.++|+|+|||+.++|++ .++++|||+++ +++.+ . + +++.+
T Consensus 83 t~g~~~~~~~~e~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~---~ll~ldePt~~~Ld~~~---~-~-~l~~l 152 (301)
T 2qnr_A 83 TPGYGDAINCRDCFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVH---CCFYFISPFGHGLKPLD---V-A-FMKAI 152 (301)
T ss_dssp EC-----------CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCC---EEEEEECSSSSSCCHHH---H-H-HHHHH
T ss_pred hhhhhhhcCcHHHHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhh---heeeeecCcccCCCHHH---H-H-HHHHH
Confidence 11 110 11222367788999999988777765 39999999653 55544 2 3 34566
Q ss_pred HhcCCCeEEEecCh
Q psy5297 145 ASNRQPFTLFATHF 158 (185)
Q Consensus 145 ~~~~~~~vii~tH~ 158 (185)
.++.+.++|+++||
T Consensus 153 ~~~~~iilV~~K~D 166 (301)
T 2qnr_A 153 HNKVNIVPVIAKAD 166 (301)
T ss_dssp TTTSCEEEEECCGG
T ss_pred HhcCCEEEEEEeCC
Confidence 55347888899998
No 116
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.45 E-value=1.9e-14 Score=110.38 Aligned_cols=128 Identities=8% Similarity=-0.071 Sum_probs=74.8
Q ss_pred eEEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHH---HHHHhhC-------------c
Q psy5297 5 TLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVS---VFLAQIG-------------C 67 (185)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i---~~~~~~g-------------~ 67 (185)
.++++++.+.|- ..++++ |.+++|..++|+|+||||||||++.+ |.. .+....| .
T Consensus 3 ~l~~~~~~~~~~------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~ 74 (210)
T 1pui_A 3 NLNYQQTHFVMS------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGK 74 (210)
T ss_dssp --------CEEE------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTE
T ss_pred chhhhhhhheee------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCE
Confidence 356677765541 246777 88999999999999999999999999 221 0000000 0
Q ss_pred --------------------------eecCCC-------------CCcc----hhhHHHhhcCcccc-cccCcCccHHHH
Q psy5297 68 --------------------------FVPCDS-------------ATIS----VVDQIFTRVGAADS-QYRGISTFMMEM 103 (185)
Q Consensus 68 --------------------------~v~~~~-------------~~~~----~~~~~l~~~~l~~~-~~~~~~~lS~g~ 103 (185)
++++.. ...+ .+..++...++... ...+...+|+|+
T Consensus 75 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~ 154 (210)
T 1pui_A 75 RLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGA 154 (210)
T ss_dssp EEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHH
T ss_pred EEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchh
Confidence 000000 0000 01122233343322 255677899999
Q ss_pred HHH-HHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHH
Q psy5297 104 KET-ATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSI 140 (185)
Q Consensus 104 ~q~-~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~i 140 (185)
+|+ +..++++ .+|.++++|||++++++.....+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l 193 (210)
T 1pui_A 155 RKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 193 (210)
T ss_dssp HHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHH
Confidence 998 6788777 888888999998888887766666655
No 117
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.41 E-value=3.2e-16 Score=119.18 Aligned_cols=140 Identities=11% Similarity=0.004 Sum_probs=71.0
Q ss_pred ceeEEEEccCCCcHHHHHHHHHH-----HHH-----H--HhhCceecCCCCC---cchhhHHH---hh---cCcccccc-
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGV-----SVF-----L--AQIGCFVPCDSAT---ISVVDQIF---TR---VGAADSQY- 93 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~-----i~~-----~--~~~g~~v~~~~~~---~~~~~~~l---~~---~~l~~~~~- 93 (185)
|++++|+|||||||||++|.|.. +.+ . ...+ ++++.... .++.+.+. .. .+.....+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ild~ 80 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGG-YRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDY 80 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTT-CCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccc-cccCccchhHHHHHHHHHHHHHHHHHhcCCcEEEee
Confidence 78999999999999999999932 111 1 1123 55543311 11222111 11 11110111
Q ss_pred -------cCcCcc--HHHHHHHHHHHH------hC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecC
Q psy5297 94 -------RGISTF--MMEMKETATVIK------KC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATH 157 (185)
Q Consensus 94 -------~~~~~l--S~g~~q~~~ia~------~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH 157 (185)
+...++ |+|+++++.++. ++ .+|+...+|+ ++++..... .+ .++.+.+ .+.++|.+||
T Consensus 81 ~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~-~~~~~~~-~~~~ii~tsh 154 (189)
T 2bdt_A 81 IAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VE-EFESKGI-DERYFYNTSH 154 (189)
T ss_dssp CCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HH-HHHHTTC-CTTSEEECSS
T ss_pred ccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HH-HHhhcCC-CccEEEeCCC
Confidence 111223 555554443333 23 3444445564 355533333 22 2344443 4789999999
Q ss_pred h--hHHHHhhccccceeeeeEEEEeccCC
Q psy5297 158 F--HEIALLSRVIPTFRNVHESKYLYHTN 184 (185)
Q Consensus 158 ~--~~~~~~~d~~~~l~~g~i~~~~~~~~ 184 (185)
. .++.++||+++ ++|+++..++++.
T Consensus 155 ~~~~~~e~~~~~i~--~~g~~~~~~~~~~ 181 (189)
T 2bdt_A 155 LQPTNLNDIVKNLK--TNPRFIFCMAGDP 181 (189)
T ss_dssp SCGGGHHHHHHHHH--HCGGGSCC-----
T ss_pred CChhhHHHHHHHHh--hCCcEEEeecCCc
Confidence 6 67889999998 9999998887654
No 118
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.40 E-value=4.2e-13 Score=99.07 Aligned_cols=101 Identities=13% Similarity=0.194 Sum_probs=61.7
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhC---ceecCCCCCcchhhHHHhhcCcccccccCcCccHH
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG---CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMM 101 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g---~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~ 101 (185)
++.++ +|+.++|+||||+|||||+++++..... .| .|++...... .
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~~~~-----------------~------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAASMPL-----------------T------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTTSCC-----------------C-------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHHhhH-----------------H-------
Confidence 45555 7999999999999999999999654322 12 1333322110 0
Q ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCe-EEEecCh--hHH---HHhhccc
Q psy5297 102 EMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPF-TLFATHF--HEI---ALLSRVI 168 (185)
Q Consensus 102 g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~-vii~tH~--~~~---~~~~d~~ 168 (185)
..+.+|+++++|||++ ++..+...+.. +++.+.+ .|.+ +|++||. .++ .++++|+
T Consensus 79 ---------~~~~~~~lLilDE~~~-~~~~~~~~l~~-li~~~~~-~g~~~iiits~~~p~~l~~~~~L~SRl 139 (149)
T 2kjq_A 79 ---------DAAFEAEYLAVDQVEK-LGNEEQALLFS-IFNRFRN-SGKGFLLLGSEYTPQQLVIREDLRTRM 139 (149)
T ss_dssp ---------GGGGGCSEEEEESTTC-CCSHHHHHHHH-HHHHHHH-HTCCEEEEEESSCTTTSSCCHHHHHHG
T ss_pred ---------HHHhCCCEEEEeCccc-cChHHHHHHHH-HHHHHHH-cCCcEEEEECCCCHHHccccHHHHHHH
Confidence 1136799999999955 33222222333 3455555 4777 8889994 323 4555554
No 119
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.38 E-value=5.6e-14 Score=119.83 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=84.0
Q ss_pred eceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH----------HHHhhCceecCCC-CCcc----------------h
Q psy5297 26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV----------FLAQIGCFVPCDS-ATIS----------------V 78 (185)
Q Consensus 26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~----------~~~~~g~~v~~~~-~~~~----------------~ 78 (185)
-++++|+++.|+.++|+|+|||||||||++|.... +....+ ++++.. ..+. .
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G-~V~~~~~~~~~l~DtpGli~~a~~~~~L 225 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGL 225 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee-EEEecCcceEEEEeccccccchhhhhhh
Confidence 36999999999999999999999999999992210 111122 333321 0000 0
Q ss_pred hhHHH----------hhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhc
Q psy5297 79 VDQIF----------TRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASN 147 (185)
Q Consensus 79 ~~~~l----------~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~ 147 (185)
....+ ..+++. +.++.++|.+++|++.+++++ ..|.++++ +.+|..+. ...+.+.+.+.+
T Consensus 226 ~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~- 296 (416)
T 1udx_A 226 GLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAR- 296 (416)
T ss_dssp CHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHh-
Confidence 01111 112222 466788999999999999998 99999999 77777765 333334344444
Q ss_pred CCCeEEEec-Ch-hHHHHhhccc
Q psy5297 148 RQPFTLFAT-HF-HEIALLSRVI 168 (185)
Q Consensus 148 ~~~~vii~t-H~-~~~~~~~d~~ 168 (185)
.+.+++++| |. ..+.++++.+
T Consensus 297 ~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 297 EGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp TTSCEEECCTTTCTTHHHHHHHH
T ss_pred cCCeEEEEECCCccCHHHHHHHH
Confidence 577777655 45 5555554433
No 120
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.37 E-value=2.5e-13 Score=114.02 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=56.5
Q ss_pred cCcCccHHHHHHHH------HHHHhC-CC-CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhh
Q psy5297 94 RGISTFMMEMKETA------TVIKKC-TE-NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLS 165 (185)
Q Consensus 94 ~~~~~lS~g~~q~~------~ia~~l-~~-p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~ 165 (185)
.+++.+|+||+||+ ++|+++ .+ |+++|||||++|+|+.....+.+.+ ..+. .+.+||++||+.++..+|
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l-~~~~--~~~~vi~~th~~~~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIF-RKVK--SIPQMIIITHHRELEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHH-HHCC--SCSEEEEEESCGGGGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHH-HHhc--cCCeEEEEEChHHHHhhC
Confidence 45679999999988 456777 88 9999999996665544433333322 3332 246899999996678899
Q ss_pred ccccceee
Q psy5297 166 RVIPTFRN 173 (185)
Q Consensus 166 d~~~~l~~ 173 (185)
|++++|++
T Consensus 353 d~~~~l~k 360 (371)
T 3auy_A 353 DVIINVKK 360 (371)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEe
Confidence 99999973
No 121
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.37 E-value=2.7e-14 Score=127.08 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=32.6
Q ss_pred CCCeEEEEeCC------CCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 114 TENSLVIIDEL------GRGTSTFDGFGMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 114 ~~p~llllDEP------~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
..|+++|+||| ++|+++.....+...+.+.+.+..+.+++++||+
T Consensus 145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~ 195 (608)
T 3szr_A 145 DVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSN 195 (608)
T ss_dssp SSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESS
T ss_pred CCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 67999999999 8888887666666655333444347788889997
No 122
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.36 E-value=1.2e-14 Score=124.12 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=68.7
Q ss_pred EEEcccCCceeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH-HHHHH-----------H-----HhhCce
Q psy5297 6 LVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GVSVF-----------L-----AQIGCF 68 (185)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~~-----------~-----~~~g~~ 68 (185)
+.+.++...| +.+.++++++|++ +|+||||||||||+++| |.... . ..++ +
T Consensus 12 l~~~~l~~~y-----~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~-~ 79 (418)
T 2qag_C 12 VGFANLPNQV-----YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSK-V 79 (418)
T ss_dssp ---CCCCCCT-----TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEE-C
T ss_pred EEEEecceeE-----CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEE-E
Confidence 4444544433 3356999999987 99999999999999999 32110 0 0112 4
Q ss_pred ecCCCC---CcchhhHHHhhcCcccccc-----c-----CcCccHHHHHHHHHHHHhC-CCCe---EEEEeCCC-CCCCc
Q psy5297 69 VPCDSA---TISVVDQIFTRVGAADSQY-----R-----GISTFMMEMKETATVIKKC-TENS---LVIIDELG-RGTST 130 (185)
Q Consensus 69 v~~~~~---~~~~~~~~l~~~~l~~~~~-----~-----~~~~lS~g~~q~~~ia~~l-~~p~---llllDEP~-~g~~~ 130 (185)
+++... .+++++.+ +.....+ + --..++.+++|+++|++++ .+|+ ++++|||+ +|+++
T Consensus 80 v~q~~~~~~~Ltv~Dt~----g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~ 155 (418)
T 2qag_C 80 LIKEGGVQLLLTIVDTP----GFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKP 155 (418)
T ss_dssp C------CEEEEEEECC---------------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCH
T ss_pred EEecCCcccceeeeech----hhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCH
Confidence 444331 12222221 1111100 0 0124677788888999999 9999 99999996 46666
Q ss_pred CChhHHHHHHHHHHHhcCCCeEEEecC
Q psy5297 131 FDGFGMACSIARELASNRQPFTLFATH 157 (185)
Q Consensus 131 ~d~~~~~~~il~~l~~~~~~~vii~tH 157 (185)
.| . . +++.+.. +..+|++.|
T Consensus 156 ~d---~-~-~lk~L~~--~v~iIlVin 175 (418)
T 2qag_C 156 LD---I-E-FMKRLHE--KVNIIPLIA 175 (418)
T ss_dssp HH---H-H-HHHHHTT--TSEEEEEEE
T ss_pred HH---H-H-HHHHHhc--cCcEEEEEE
Confidence 55 2 2 2355553 555555444
No 123
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.35 E-value=2.2e-14 Score=120.30 Aligned_cols=137 Identities=9% Similarity=-0.049 Sum_probs=79.4
Q ss_pred eceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHH
Q psy5297 26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKE 105 (185)
Q Consensus 26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q 105 (185)
+++++|.+++|++++|+||||||||||+|+|.... ....|.....+...+... ..-..+++-.. .+....++.+...
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~-~~~~g~I~ie~~~e~~~~-~~~~~v~~v~~-q~~~~~~~~~~t~ 241 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI-PFDQRLITIEDVPELFLP-DHPNHVHLFYP-SEAKEEENAPVTA 241 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS-CTTSCEEEEESSSCCCCT-TCSSEEEEECC-----------CCH
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC-CCCceEEEECCccccCcc-ccCCEEEEeec-CccccccccccCH
Confidence 38999999999999999999999999999994311 111221111111111100 00000110000 0000112355567
Q ss_pred HHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccccceeee
Q psy5297 106 TATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNV 174 (185)
Q Consensus 106 ~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~~~l~~g 174 (185)
+..++.++ .+|+.+++||| .+ ..... +++.+.. ...+++.++|.......++|+..+..+
T Consensus 242 ~~~i~~~l~~~pd~~l~~e~---r~----~~~~~-~l~~l~~-g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 242 ATLLRSCLRMKPTRILLAEL---RG----GEAYD-FINVAAS-GHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp HHHHHHHTTSCCSEEEESCC---CS----THHHH-HHHHHHT-TCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCEEEEcCc---hH----HHHHH-HHHHHhc-CCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 78888888 89999999999 32 22333 3466654 245678899986678888888776554
No 124
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.34 E-value=3.1e-13 Score=115.38 Aligned_cols=127 Identities=13% Similarity=0.023 Sum_probs=74.0
Q ss_pred eeeeceEEEeeCCcee--EEEEccCCCcHHHHHHHHHHHHH-----H--------HhhCceecCCCCC---cch------
Q psy5297 23 SYIPNDVYFKSGEVSF--NLVTGPNMGGKSTYIRSIGVSVF-----L--------AQIGCFVPCDSAT---ISV------ 78 (185)
Q Consensus 23 ~~il~~isl~i~~g~~--~~l~G~NGsGKSTLlk~iG~i~~-----~--------~~~g~~v~~~~~~---~~~------ 78 (185)
.+ ++++||++++|++ ++|+||||||||||+|+|....+ . ..++ |++|.... +++
T Consensus 28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~-~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNT-YDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEE-EEEEC--CEEEEEEEEEECC
T ss_pred ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEE-EEeecCccccccchhhhhhh
Confidence 44 9999999999999 99999999999999999922111 1 1123 77776421 111
Q ss_pred --------------------hhHHHhhc-Cccc----ccccC----c-------CccHHHHHHHHHHHHhC-CCCeEEEE
Q psy5297 79 --------------------VDQIFTRV-GAAD----SQYRG----I-------STFMMEMKETATVIKKC-TENSLVII 121 (185)
Q Consensus 79 --------------------~~~~l~~~-~l~~----~~~~~----~-------~~lS~g~~q~~~ia~~l-~~p~llll 121 (185)
++.++... ++.. ..+.. + ..++... +.+++++ .+++++++
T Consensus 106 g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~V 182 (427)
T 2qag_B 106 GDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPI 182 (427)
T ss_dssp CC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEE
T ss_pred hhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEE
Confidence 11122222 2211 01111 1 1233333 6788999 89999999
Q ss_pred eCCCCCCCcCChhHHHH---HHHHHHHhcCCCeEEEecCh
Q psy5297 122 DELGRGTSTFDGFGMAC---SIARELASNRQPFTLFATHF 158 (185)
Q Consensus 122 DEP~~g~~~~d~~~~~~---~il~~l~~~~~~~vii~tH~ 158 (185)
||| +|.+....+.. .+.+.+.. .|..|+.+|.+
T Consensus 183 i~K---tD~Lt~~E~~~l~~~I~~~L~~-~gi~I~~is~~ 218 (427)
T 2qag_B 183 IAK---ADAISKSELTKFKIKITSELVS-NGVQIYQFPTD 218 (427)
T ss_dssp ESC---GGGSCHHHHHHHHHHHHHHHBT-TBCCCCCCC--
T ss_pred Ecc---hhccchHHHHHHHHHHHHHHHH-cCCcEEecCCC
Confidence 999 55555554443 33334655 68999988875
No 125
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.34 E-value=1.9e-12 Score=109.94 Aligned_cols=144 Identities=14% Similarity=0.062 Sum_probs=79.0
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHHHHHH-Hhh------CceecCCC-CCcchhhHHHhhcCcccc--c-ccC-cCcc
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQI------GCFVPCDS-ATISVVDQIFTRVGAADS--Q-YRG-ISTF 99 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-~~~------g~~v~~~~-~~~~~~~~~l~~~~l~~~--~-~~~-~~~l 99 (185)
.+++|++++|+||||||||||++.+...... ... ..|+..+. ........+...+++... . +-. ...+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 4689999999999999999999977422111 111 11443332 122234445566665321 0 000 1112
Q ss_pred H-HHHHHHHHHH-HhC--CCCeEEEEeCCCCCCCcCCh-----hH----HHHH--HHHHHHhcCCCeEEEecCh-h----
Q psy5297 100 M-MEMKETATVI-KKC--TENSLVIIDELGRGTSTFDG-----FG----MACS--IARELASNRQPFTLFATHF-H---- 159 (185)
Q Consensus 100 S-~g~~q~~~ia-~~l--~~p~llllDEP~~g~~~~d~-----~~----~~~~--il~~l~~~~~~~vii~tH~-~---- 159 (185)
+ ..+.+.+.-+ ..+ .+|+++++|||++.++..-. .. +.+. .+..++++.+.+||+++|. .
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g 333 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDG 333 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC------
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCc
Confidence 2 2233333322 222 68999999999655543211 00 0111 1455655569999999997 1
Q ss_pred ---------------HHHHhhccccceeeee
Q psy5297 160 ---------------EIALLSRVIPTFRNVH 175 (185)
Q Consensus 160 ---------------~~~~~~d~~~~l~~g~ 175 (185)
.+...+|.+++|+.++
T Consensus 334 ~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 334 GMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --------------CHHHHHCSEEEEEEECS
T ss_pred cccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 1355678888888753
No 126
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.34 E-value=8.7e-13 Score=112.63 Aligned_cols=78 Identities=9% Similarity=0.021 Sum_probs=58.0
Q ss_pred cCcCccHHHHHHHHHHHHhC-C----CCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHhhccc
Q psy5297 94 RGISTFMMEMKETATVIKKC-T----ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVI 168 (185)
Q Consensus 94 ~~~~~lS~g~~q~~~ia~~l-~----~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~~d~~ 168 (185)
++++.||+||||+++||+++ . +|+++|||||++++|+.....+... +..+.+ .+.++|++||+......||++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~-l~~~~~-~~~~~ii~th~~~~~~~~d~~ 406 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY-IRRHRN-PDLQFIVISLKNTMFEKSDAL 406 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH-HHHHCB-TTBEEEEECSCHHHHTTCSEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHH-HHHHhc-CCCEEEEEECCHHHHHhCCEE
Confidence 34567999999999999998 3 6999999999555544443333332 244433 378999999997777889999
Q ss_pred cceee
Q psy5297 169 PTFRN 173 (185)
Q Consensus 169 ~~l~~ 173 (185)
+.|..
T Consensus 407 ~~~~~ 411 (430)
T 1w1w_A 407 VGVYR 411 (430)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98864
No 127
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.30 E-value=9.3e-13 Score=103.22 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=60.6
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHH-HHHH---HH---------------HhhCceecCCCCCcchhhHHHhhcCccccc
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSI-GVSV---FL---------------AQIGCFVPCDSATISVVDQIFTRVGAADSQ 92 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~i-G~i~---~~---------------~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~ 92 (185)
..++|++++|+||||||||||+|+| |... +. ..++ |+||++..+ ..+...-.+.+..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~-y~fq~~~~f---~~~~~~~~f~E~~ 87 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEH-YFFVNHDEF---KEMISRDAFLEHA 87 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTT-BEECCHHHH---HHHHHTTCEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCce-EEECCHHHH---HHHHhcCHHHHHH
Confidence 3578999999999999999999999 4321 10 0122 444443211 1111100000111
Q ss_pred ccCcCccHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHH
Q psy5297 93 YRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIAL 163 (185)
Q Consensus 93 ~~~~~~lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~ 163 (185)
.- ...+.+--++ .+..++..++++||| +|.....+.. +.+. .+.+|+++||+ .++.+
T Consensus 88 ~~-~~~~yg~~~~--~v~~~l~~G~illLD--------LD~~~~~~i~-~~l~--~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 88 EV-FGNYYGTSRE--AIEQVLATGVDVFLD--------IDWQGAQQIR-QKMP--HARSIFILPPSKIELDR 145 (219)
T ss_dssp EE-TTEEEEEEHH--HHHHHHTTTCEEEEE--------CCHHHHHHHH-HHCT--TCEEEEEECSSHHHHHH
T ss_pred HH-HhccCCCCHH--HHHHHHhcCCeEEEE--------ECHHHHHHHH-HHcc--CCEEEEEECCCHHHHHH
Confidence 00 0111110111 233445778999999 6766665533 4443 48899999998 55544
No 128
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.26 E-value=1.9e-11 Score=95.59 Aligned_cols=58 Identities=12% Similarity=0.039 Sum_probs=38.4
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHH---HHHHHHHhcCCCeEEEecCh-hH--------HHHhhccccceee
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMAC---SIARELASNRQPFTLFATHF-HE--------IALLSRVIPTFRN 173 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~---~il~~l~~~~~~~vii~tH~-~~--------~~~~~d~~~~l~~ 173 (185)
.+|+++++|+|+....+ |.....+ .+.+.+++ .+++|++++|. .+ +...||.++.++.
T Consensus 127 ~~~~~vviD~~~~l~~~-~~~~~~~~l~~l~~~~~~-~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYIN-KPAMARSIILQLKRVLAG-TGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTT-CGGGHHHHHHHHHHHHHH-TTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcC-CHHHHHHHHHHHHHHHHH-CCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 57999999999765522 3322222 23333344 69999999996 44 4678899998875
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.24 E-value=1.1e-11 Score=107.40 Aligned_cols=126 Identities=18% Similarity=0.189 Sum_probs=74.1
Q ss_pred eceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH-------------------------H--HHhhCceecCCCCCcc-
Q psy5297 26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV-------------------------F--LAQIGCFVPCDSATIS- 77 (185)
Q Consensus 26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~-------------------------~--~~~~g~~v~~~~~~~~- 77 (185)
.+++||++++|++++|+||||||||||+++|.... + +..++ |++|.....+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~-vV~Q~~~~~p~ 361 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP-VIAQHTGADSA 361 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCC-EECCSTTCCHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCce-EEecccCcCHH
Confidence 46899999999999999999999999999992211 1 12344 7887653222
Q ss_pred --hhhHHHhh--cCcc----ccccc--CcCccHHHHHHHHHHHHhC--CCC-eEEEEeCCCCCCCcCChhHHHHHHHHHH
Q psy5297 78 --VVDQIFTR--VGAA----DSQYR--GISTFMMEMKETATVIKKC--TEN-SLVIIDELGRGTSTFDGFGMACSIAREL 144 (185)
Q Consensus 78 --~~~~~l~~--~~l~----~~~~~--~~~~lS~g~~q~~~ia~~l--~~p-~llllDEP~~g~~~~d~~~~~~~il~~l 144 (185)
+.+++... -+.+ +...+ .-..+....++++.+++++ ..| .++|...++.| .+ .... ++.+
T Consensus 362 ~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG---q~---al~~-ak~f 434 (503)
T 2yhs_A 362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG---QN---AVSQ-AKLF 434 (503)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT---HH---HHHH-HHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc---HH---HHHH-HHHH
Confidence 22222110 0111 11111 1123555667888888866 456 45555557333 22 2222 2445
Q ss_pred HhcCCCeEEEecChh
Q psy5297 145 ASNRQPFTLFATHFH 159 (185)
Q Consensus 145 ~~~~~~~vii~tH~~ 159 (185)
++..+.+.+++||..
T Consensus 435 ~~~~~itgvIlTKLD 449 (503)
T 2yhs_A 435 HEAVGLTGITLTKLD 449 (503)
T ss_dssp HHHTCCSEEEEECGG
T ss_pred HhhcCCCEEEEEcCC
Confidence 544689999999953
No 130
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.22 E-value=1.1e-10 Score=95.23 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=82.2
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHHHHHH--H-hhCceecCCCCCcchhhHH---HhhcCcccccccCcCccHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFL--A-QIGCFVPCDSATISVVDQI---FTRVGAADSQYRGISTFMMEMKETA 107 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~--~-~~g~~v~~~~~~~~~~~~~---l~~~~l~~~~~~~~~~lS~g~~q~~ 107 (185)
.+|++++++||||+||||+++.|+...-. + ++. ++.++.......+.+ .+..++..... .+. ..-+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~-lv~~D~~r~~a~eqL~~~~~~~gl~~~~~-----~~~-~~l~~ 175 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIA-FITTDTYRIAAVEQLKTYAELLQAPLEVC-----YTK-EEFQQ 175 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEE-EEECCCSSTTHHHHHHHHHTTTTCCCCBC-----SSH-HHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEE-EEecCcccchHHHHHHHHHHhcCCCeEec-----CCH-HHHHH
Confidence 47899999999999999999999654332 2 233 777776443333322 23334322111 112 22244
Q ss_pred HHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHh--cCCCeEEE-ecCh-hHHHHhhccccceeeeeEEEE
Q psy5297 108 TVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELAS--NRQPFTLF-ATHF-HEIALLSRVIPTFRNVHESKY 179 (185)
Q Consensus 108 ~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~--~~~~~vii-~tH~-~~~~~~~d~~~~l~~g~i~~~ 179 (185)
+++++ .+|+++|+| |+|.++.+...+.+ +.+.+.. ..+..+++ +||. .++.++++++..+..+.++..
T Consensus 176 al~~~-~~~dlvIiD--T~G~~~~~~~~~~e-l~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 176 AKELF-SEYDHVFVD--TAGRNFKDPQYIDE-LKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHHG-GGSSEEEEE--CCCCCTTSHHHHHH-HHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred HHHHh-cCCCEEEEe--CCCCChhhHHHHHH-HHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 55544 889999999 66787776544433 2222221 11334455 5887 788889998887777777653
No 131
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.22 E-value=3.1e-13 Score=102.38 Aligned_cols=88 Identities=11% Similarity=0.092 Sum_probs=52.8
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHHH------HH-----HH-----hhCceecCCCC-CcchhhHHHh----------
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGVS------VF-----LA-----QIGCFVPCDSA-TISVVDQIFT---------- 84 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i------~~-----~~-----~~g~~v~~~~~-~~~~~~~~l~---------- 84 (185)
.+++|++++|+|||||||||++|+|... .+ .. ....|++|... ..++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 84 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGY 84 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccCC
Confidence 4688999999999999999999999321 11 00 01124544321 1111111110
Q ss_pred ---------hcCccccc--ccCcCccHHHHHHHHHHHHhC-CCCeEE
Q psy5297 85 ---------RVGAADSQ--YRGISTFMMEMKETATVIKKC-TENSLV 119 (185)
Q Consensus 85 ---------~~~l~~~~--~~~~~~lS~g~~q~~~ia~~l-~~p~ll 119 (185)
.+++.... +.++..+|.|++|++.++|++ .+|+++
T Consensus 85 ~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l 131 (191)
T 1zp6_A 85 FVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL 131 (191)
T ss_dssp EEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred eEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence 01111111 345678999999999999999 877655
No 132
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.20 E-value=4.5e-12 Score=103.31 Aligned_cols=97 Identities=12% Similarity=0.059 Sum_probs=63.2
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHHHHHHH----hhCceecCCCCCcch-----------------------------hh
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLA----QIGCFVPCDSATISV-----------------------------VD 80 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~----~~g~~v~~~~~~~~~-----------------------------~~ 80 (185)
+++.+++|.||+|||||||.+.|....-.. ....+|+++...++. +.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 568899999999999999999995433211 133244666543331 11
Q ss_pred HHHhhcCcc------c--ccccCcCccHHHHHHHHHHH--HhCCCCeEEEEeCCCCCCCcC
Q psy5297 81 QIFTRVGAA------D--SQYRGISTFMMEMKETATVI--KKCTENSLVIIDELGRGTSTF 131 (185)
Q Consensus 81 ~~l~~~~l~------~--~~~~~~~~lS~g~~q~~~ia--~~l~~p~llllDEP~~g~~~~ 131 (185)
+.+..+... + .....-..+|+||+||+.+| +++ +|+++|+|||++++++.
T Consensus 109 ~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 109 EVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp HHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCC
T ss_pred HHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCcc
Confidence 112222111 1 01233457899999999887 555 99999999998888774
No 133
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.16 E-value=2.4e-12 Score=96.01 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=34.2
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
+.+++++||++++|++++|+||||||||||+|+|...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5689999999999999999999999999999999543
No 134
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.16 E-value=9.8e-13 Score=108.31 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHHHHhh
Q psy5297 98 TFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEIALLS 165 (185)
Q Consensus 98 ~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~~~~~ 165 (185)
++|+||+|++..++++ .+|+++ ||| ..+...+ +.++ .+.+|+++||. .++..+.
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l-~~l~--~~~~ii~~sh~~~~~~~l~ 196 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERL-ARIN--ARAPVYTVTHGDIDLGLLF 196 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHH-HHHC--SSSCEEECCSSCCCGGGGS
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHH-HHhC--CCCeEEEecccCCCHHHHh
Confidence 7899999998777776 777766 777 3444433 5553 48999999996 5544443
No 135
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.16 E-value=1.5e-11 Score=102.91 Aligned_cols=86 Identities=9% Similarity=0.002 Sum_probs=61.8
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHH---------HHHHHH-H---------hhCceecCCCCCc---------
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI---------GVSVFL-A---------QIGCFVPCDSATI--------- 76 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i---------G~i~~~-~---------~~g~~v~~~~~~~--------- 76 (185)
-++++++.+ +|++++|+||||+|||||+|+| |.|.+. + +++ ++||....+
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~-~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLY-HFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEE-ECTTSCEEEECHHHHTCC
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEE-EECCCCEecCcccHHHhh
Confidence 356666654 6999999999999999999999 333332 1 223 666654111
Q ss_pred ----c------hhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC
Q psy5297 77 ----S------VVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC 113 (185)
Q Consensus 77 ----~------~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l 113 (185)
+ .+.++++.+++.+..++.+.++| ||+||+++|+++
T Consensus 283 l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 1 24566778888888999999999 999999999874
No 136
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.15 E-value=1.4e-10 Score=96.66 Aligned_cols=139 Identities=14% Similarity=0.170 Sum_probs=78.7
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHH-HHHHHHhhCceecCCCCCcchhhHHHhhcCccc--ccccCcCccHHHHHHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIG-VSVFLAQIGCFVPCDSATISVVDQIFTRVGAAD--SQYRGISTFMMEMKETAT 108 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG-~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~lS~g~~q~~~ 108 (185)
.+++|+++.|.||||+|||||+..+. .+.-......|+..+.. +.. .....++... ..-..+ .+.. +.+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~-~~~--~~a~~lG~~~~~l~i~~~--~~~e--~~l~ 129 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA-LDP--EYAKKLGVDTDSLLVSQP--DTGE--QALE 129 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CCH--HHHHHTTCCGGGCEEECC--SSHH--HHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-cCH--HHHHHcCCCHHHeEEecC--CCHH--HHHH
Confidence 35689999999999999999988874 33222112235555432 111 1234455431 111111 1222 3345
Q ss_pred HHHhC---CCCeEEEEeCCCCCCCcC-------Ch----h--HHHHHHHHHH---HhcCCCeEEEecCh-hH--------
Q psy5297 109 VIKKC---TENSLVIIDELGRGTSTF-------DG----F--GMACSIAREL---ASNRQPFTLFATHF-HE-------- 160 (185)
Q Consensus 109 ia~~l---~~p~llllDEP~~g~~~~-------d~----~--~~~~~il~~l---~~~~~~~vii~tH~-~~-------- 160 (185)
+++.+ .+|+++++|||++.+... |. . .+.+.+ ..+ .++.+++||+++|. ..
T Consensus 130 ~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l-~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p 208 (349)
T 2zr9_A 130 IADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAL-RKMTGALNNSGTTAIFINELREKIGVMFGSP 208 (349)
T ss_dssp HHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHH-HHHHHHHHHHTCEEEEEEECC----------
T ss_pred HHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHH-HHHHHHHHHhCCEEEEEeccccccCcccCCC
Confidence 55544 459999999997665210 11 1 122222 333 23369999999995 31
Q ss_pred --------HHHhhccccceeeeeEEE
Q psy5297 161 --------IALLSRVIPTFRNVHESK 178 (185)
Q Consensus 161 --------~~~~~d~~~~l~~g~i~~ 178 (185)
+..+||.++.++.+++..
T Consensus 209 ~~~~gg~~l~~~ad~~l~lrr~~~~k 234 (349)
T 2zr9_A 209 ETTTGGKALKFYASVRLDVRRIETLK 234 (349)
T ss_dssp -CCSSHHHHHHHCSEEEEEEEEEEEC
T ss_pred cccCCchHhhhccceEEEEEEeeeee
Confidence 456788888888766543
No 137
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.14 E-value=8.6e-11 Score=97.27 Aligned_cols=119 Identities=16% Similarity=0.099 Sum_probs=66.1
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHHHHH-------------------------HHhhCc-eecCCCCCcc---hhhHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-------------------------LAQIGC-FVPCDSATIS---VVDQI 82 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~-------------------------~~~~g~-~v~~~~~~~~---~~~~~ 82 (185)
..++|++++|+|||||||||+++.|....- ..+++. +++|.....+ +.+++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 347899999999999999999999933211 122332 5566543322 23332
Q ss_pred Hhh--cCccc-ccccC-cCc-cHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEec
Q psy5297 83 FTR--VGAAD-SQYRG-IST-FMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFAT 156 (185)
Q Consensus 83 l~~--~~l~~-~~~~~-~~~-lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~t 156 (185)
... -+.+. ..+.. ... -..-+.+...+++++ .++++++||.+ +. ......+ +.+.+..+.++|++|
T Consensus 205 ~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~---t~----~~~~~~~-~~~~~~~~it~iilT 276 (328)
T 3e70_C 205 QHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDAL---AG----NAIVEQA-RQFNEAVKIDGIILT 276 (328)
T ss_dssp HHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGG---GT----THHHHHH-HHHHHHSCCCEEEEE
T ss_pred HHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecH---HH----HHHHHHH-HHHHHhcCCCEEEEe
Confidence 210 01000 01110 000 011123334488888 88999999977 32 2233323 555544689999999
Q ss_pred Ch
Q psy5297 157 HF 158 (185)
Q Consensus 157 H~ 158 (185)
|.
T Consensus 277 Kl 278 (328)
T 3e70_C 277 KL 278 (328)
T ss_dssp CG
T ss_pred Cc
Confidence 95
No 138
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.13 E-value=8.8e-11 Score=96.33 Aligned_cols=93 Identities=22% Similarity=0.168 Sum_probs=62.7
Q ss_pred eEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhC--ceecCCCCCcch---hhHHHhhcCcccccccCcCccHHH
Q psy5297 28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG--CFVPCDSATISV---VDQIFTRVGAADSQYRGISTFMME 102 (185)
Q Consensus 28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g--~~v~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~lS~g 102 (185)
.++++.+++++++++|||||||||+++.|+...-. +-+ .++..+...... +..+.+..++.- ....|++
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~-----~~~~s~~ 169 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRAAAIEQLKIWGERVGATV-----ISHSEGA 169 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE-----ECCSTTC
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEccccccHHHHHHHHHHHHHcCCcE-----EecCCcc
Confidence 45666788999999999999999999999654321 211 134444322221 233445555542 2345678
Q ss_pred HHHHH---HHHHhC-CCCeEEEEeCCCC
Q psy5297 103 MKETA---TVIKKC-TENSLVIIDELGR 126 (185)
Q Consensus 103 ~~q~~---~ia~~l-~~p~llllDEP~~ 126 (185)
+.+++ ++++++ .+|+++|+|||..
T Consensus 170 ~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 170 DPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 88888 788888 9999999999953
No 139
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.11 E-value=1.8e-10 Score=98.98 Aligned_cols=153 Identities=9% Similarity=0.006 Sum_probs=90.6
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-h-hCceecCCCCCcchhhHH-------------------
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-Q-IGCFVPCDSATISVVDQI------------------- 82 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-~-~g~~v~~~~~~~~~~~~~------------------- 82 (185)
..|+++...+.+|++++|.|++|+|||||+..+..-.... . -..|+.-+.........+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~ 270 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTP 270 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCH
Confidence 3677777779999999999999999999999884332221 1 111332221111111111
Q ss_pred ---------HhhcCcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcC-----ChhHHHHHH--HHHHH
Q psy5297 83 ---------FTRVGAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTF-----DGFGMACSI--ARELA 145 (185)
Q Consensus 83 ---------l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~-----d~~~~~~~i--l~~l~ 145 (185)
+..++.....-.....+|.++.+...-.... .+|+++++|++..-.... +...+.+.. ++.++
T Consensus 271 ~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lA 350 (454)
T 2r6a_A 271 EDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALA 350 (454)
T ss_dssp HHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 1111111112223356788877643322223 689999999997765432 222223322 45666
Q ss_pred hcCCCeEEEecCh-----------h---------HHHHhhccccceeeeeE
Q psy5297 146 SNRQPFTLFATHF-----------H---------EIALLSRVIPTFRNVHE 176 (185)
Q Consensus 146 ~~~~~~vii~tH~-----------~---------~~~~~~d~~~~l~~g~i 176 (185)
++.+++||+++|- . .+...||.+++|+.++.
T Consensus 351 ke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 351 RELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 5579999999991 1 36778999999987654
No 140
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.09 E-value=1.1e-12 Score=101.43 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=30.4
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHHHHHHH--HhhCceecCCCC
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFL--AQIGCFVPCDSA 74 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~--~~~g~~v~~~~~ 74 (185)
.++|++++|+||||||||||+|+|....-- ...+ +++++..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g-~v~~d~~ 61 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAE-VVPMDGF 61 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEE-EEESGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceE-EEecCCC
Confidence 478999999999999999999999543321 1244 6666553
No 141
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.08 E-value=2e-11 Score=96.51 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.8
Q ss_pred CceeEEEEccCCCcHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~i 56 (185)
++++++|+||||||||||+|+|
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~L 47 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRI 47 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4689999999999999999999
No 142
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.04 E-value=1.9e-10 Score=95.38 Aligned_cols=35 Identities=29% Similarity=0.256 Sum_probs=32.9
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
+.++++++|++.+|++++|+||||||||||+++|.
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 45899999999999999999999999999999994
No 143
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=3.3e-10 Score=93.43 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=30.3
Q ss_pred CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhc-CCCeEEEecCh-hHH-HHhhccc
Q psy5297 114 TENSLVIIDELGRGTSTFDGFGMACSIARELASN-RQPFTLFATHF-HEI-ALLSRVI 168 (185)
Q Consensus 114 ~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~-~~~~vii~tH~-~~~-~~~~d~~ 168 (185)
.+|+++++|||.+ +|...... +++.+.+. .+.++|++||+ ..+ ..+..|+
T Consensus 133 ~~~~vlilDE~~~----L~~~~~~~-L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~ 185 (354)
T 1sxj_E 133 HRYKCVIINEANS----LTKDAQAA-LRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQC 185 (354)
T ss_dssp -CCEEEEEECTTS----SCHHHHHH-HHHHHHHSTTTEEEEEEESCSCSSCHHHHTTS
T ss_pred CCCeEEEEeCccc----cCHHHHHH-HHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhc
Confidence 6899999999944 55443333 33444431 36789999997 432 3344554
No 144
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.91 E-value=1.7e-12 Score=104.88 Aligned_cols=118 Identities=8% Similarity=-0.006 Sum_probs=72.1
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHH-------------------HHhhCceecCCC----CCcchh
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF-------------------LAQIGCFVPCDS----ATISVV 79 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~-------------------~~~~g~~v~~~~----~~~~~~ 79 (185)
..+++++++.+++| ++|+||||+|||||+|+|....- ...++ ++++.. ..+.++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~-~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVR-QVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHH-HHHHHHHHTCSEEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHH-HHHHHHHhcCCCeEee
Confidence 45789999999999 99999999999999999933210 01122 333321 001111
Q ss_pred hHHHhhc---------CcccccccCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCC---------CCcCChhHHHHHH
Q psy5297 80 DQIFTRV---------GAADSQYRGISTFMMEMKETATVIKKC-TENSLVIIDELGRG---------TSTFDGFGMACSI 140 (185)
Q Consensus 80 ~~~l~~~---------~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g---------~~~~d~~~~~~~i 140 (185)
+++-... ......++.+.+||+||+|+..+++++ .+|+++ ||++.- +...|.....+ +
T Consensus 110 Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~-i 186 (274)
T 2x8a_A 110 DEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLA-I 186 (274)
T ss_dssp ETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHH-H
T ss_pred ehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHH-H
Confidence 2111100 011223455678999999999999999 999874 998541 34456555544 3
Q ss_pred HHHHHh
Q psy5297 141 ARELAS 146 (185)
Q Consensus 141 l~~l~~ 146 (185)
++.+.+
T Consensus 187 l~~~~~ 192 (274)
T 2x8a_A 187 LKTITK 192 (274)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 455543
No 145
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.91 E-value=3.7e-09 Score=86.15 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=57.9
Q ss_pred ceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhC--ceecCCCCCcch---hhHHHhhcCcccccccCcCccHH
Q psy5297 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG--CFVPCDSATISV---VDQIFTRVGAADSQYRGISTFMM 101 (185)
Q Consensus 27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g--~~v~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~lS~ 101 (185)
++++|+ +|++++++|+||+||||+++.++...-. .-+ .++..+...... +..+.+..++.-..... ....
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~--~~~p 165 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMD--GESP 165 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCT--TCCH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCC--CCCH
Confidence 678887 8999999999999999999999654322 111 133333221111 12233444443221100 1112
Q ss_pred HHHHHHHHHHhC-CCCeEEEEeCC-CCCC
Q psy5297 102 EMKETATVIKKC-TENSLVIIDEL-GRGT 128 (185)
Q Consensus 102 g~~q~~~ia~~l-~~p~llllDEP-~~g~ 128 (185)
...++.+++.+. .+++++|+||| +.++
T Consensus 166 ~~l~~~~l~~~~~~~~D~viiDtpp~~~~ 194 (295)
T 1ls1_A 166 ESIRRRVEEKARLEARDLILVDTAGRLQI 194 (295)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCCSSC
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCccc
Confidence 233567787776 89999999999 5554
No 146
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.90 E-value=2.9e-10 Score=88.86 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=22.5
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHH-HH
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG-VS 59 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG-~i 59 (185)
....++||++++|++++|+||||||||||+++|. ..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4679999999999999999999999999999997 54
No 147
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.87 E-value=1.2e-10 Score=87.77 Aligned_cols=106 Identities=19% Similarity=0.109 Sum_probs=60.5
Q ss_pred eeEEEEccCCCcHHHHHHHHHHH---------------------------HHH-HhhCc---eecCCCCCc-c-------
Q psy5297 37 SFNLVTGPNMGGKSTYIRSIGVS---------------------------VFL-AQIGC---FVPCDSATI-S------- 77 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~iG~i---------------------------~~~-~~~g~---~v~~~~~~~-~------- 77 (185)
++++|+|+||||||||++.|... .++ .+++. +++|+...+ .
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~~~ 82 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEEG 82 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChhhh
Confidence 57999999999999999999211 111 23441 455554221 0
Q ss_pred -hhhHHHhh-c-CcccccccCcCccHHHHHHHHHHHHhC-CCCeEE-------EEeCCCCC---CCcCChhHHHHHHHHH
Q psy5297 78 -VVDQIFTR-V-GAADSQYRGISTFMMEMKETATVIKKC-TENSLV-------IIDELGRG---TSTFDGFGMACSIARE 143 (185)
Q Consensus 78 -~~~~~l~~-~-~l~~~~~~~~~~lS~g~~q~~~ia~~l-~~p~ll-------llDEP~~g---~~~~d~~~~~~~il~~ 143 (185)
.+++++.. + +++-... ..||+||+||++|||++ .+|++. .=|.|..+ ++.-|...+...+.+.
T Consensus 83 a~l~~~i~~~l~g~dt~i~---EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~ 159 (171)
T 2f1r_A 83 NDLDWIYERYLSDYDLVIT---EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSL 159 (171)
T ss_dssp TCHHHHHHHHTTTCSEEEE---ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHH
T ss_pred hCHHHHHHhhCCCCCEEEE---CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHH
Confidence 12233332 2 2221122 23999999999999998 887652 23555221 1223455566655555
Q ss_pred HH
Q psy5297 144 LA 145 (185)
Q Consensus 144 l~ 145 (185)
+.
T Consensus 160 ~~ 161 (171)
T 2f1r_A 160 LR 161 (171)
T ss_dssp HT
T ss_pred Hh
Confidence 44
No 148
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.85 E-value=1.1e-09 Score=83.41 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=23.5
Q ss_pred EEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 30 YFKSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 30 sl~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
|+++++|++++|+||||||||||+++|..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHh
Confidence 56778999999999999999999999944
No 149
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.79 E-value=2.9e-09 Score=92.22 Aligned_cols=33 Identities=24% Similarity=0.106 Sum_probs=31.3
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
..+++++||++++ ++++|+|||||||||||++|
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l 49 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGF 49 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHH
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHH
Confidence 3479999999999 99999999999999999999
No 150
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.77 E-value=5.6e-08 Score=81.20 Aligned_cols=136 Identities=11% Similarity=0.105 Sum_probs=74.7
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHHHHHHH-HhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHH
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK 111 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~ 111 (185)
+++|+++.|.||||+|||||+..+...... .....|+..+...... ..+++++....-......+.. +.+.+++
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~---ra~rlgv~~~~l~i~~~~~~e--~~l~~~~ 132 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV---YAKNLGVDLKSLLISQPDHGE--QALEIVD 132 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHHTCCGGGCEEECCSSHH--HHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH---HHHHcCCchhhhhhhhccCHH--HHHHHHH
Confidence 578999999999999999999998532221 1111266544322211 445555532111111122222 2333444
Q ss_pred hC---CCCeEEEEeCCCCCCC--cC-----Ch------hHHHHHH--HHHHHhcCCCeEEEecCh-hH------------
Q psy5297 112 KC---TENSLVIIDELGRGTS--TF-----DG------FGMACSI--ARELASNRQPFTLFATHF-HE------------ 160 (185)
Q Consensus 112 ~l---~~p~llllDEP~~g~~--~~-----d~------~~~~~~i--l~~l~~~~~~~vii~tH~-~~------------ 160 (185)
.+ ..|+++++|+..+=.. .+ +. ..+.+.+ +..+.++.+.+||++.|- ..
T Consensus 133 ~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~ 212 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTT 212 (356)
T ss_dssp HHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCT
T ss_pred HHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCC
Confidence 32 5799999999743332 00 10 1122222 345555579999998885 11
Q ss_pred ----HHHhhccccceee
Q psy5297 161 ----IALLSRVIPTFRN 173 (185)
Q Consensus 161 ----~~~~~d~~~~l~~ 173 (185)
+..++|.++.++.
T Consensus 213 GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 213 GGLALKFYATMRMEVRR 229 (356)
T ss_dssp HHHHHHHHCSEEEEEEE
T ss_pred CcchhhhhCcEEEEEEe
Confidence 3456777777775
No 151
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.73 E-value=5e-10 Score=92.48 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=31.8
Q ss_pred ceeeeceEEEeeCCc-------eeEEEEccCCCcHHHHHHHHH
Q psy5297 22 VSYIPNDVYFKSGEV-------SFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 22 ~~~il~~isl~i~~g-------~~~~l~G~NGsGKSTLlk~iG 57 (185)
...+++++++.++.| +.++|+||||+|||||+|+|+
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 345888999998877 899999999999999999993
No 152
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.70 E-value=1.2e-08 Score=88.24 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=63.2
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHH
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMK 104 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~ 104 (185)
.+.++++.+++| +.|+||+|+|||||+|+|+.-. ..- ++.-.. .++. ....+ .++++
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~---~~~-f~~is~------~~~~---------~~~~g--~~~~~ 96 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA---NVP-FFHISG------SDFV---------ELFVG--VGAAR 96 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH---TCC-EEEEEG------GGTT---------TCCTT--HHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc---CCC-eeeCCH------HHHH---------HHHhc--ccHHH
Confidence 445666777777 8899999999999999995421 111 111100 0000 11111 25667
Q ss_pred HHHHHHHhC-CCCeEEEEeCCCCC-------CCcCChh--HHHHHHHHHHH---hcCCCeEEEecChh
Q psy5297 105 ETATVIKKC-TENSLVIIDELGRG-------TSTFDGF--GMACSIARELA---SNRQPFTLFATHFH 159 (185)
Q Consensus 105 q~~~ia~~l-~~p~llllDEP~~g-------~~~~d~~--~~~~~il~~l~---~~~~~~vii~tH~~ 159 (185)
.|..+.++. ..|.+|++||+-+- +...+.. .....++..+. ...+..||.+||..
T Consensus 97 ~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 97 VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 777788887 89999999999431 1122211 12222334442 22366788899974
No 153
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.68 E-value=3.1e-08 Score=90.35 Aligned_cols=136 Identities=14% Similarity=0.101 Sum_probs=76.6
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHH-HHHHHHhhCc---ee-cCCCCCcchhhHHHhhcCcc------------c--ccc
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIG-VSVFLAQIGC---FV-PCDSATISVVDQIFTRVGAA------------D--SQY 93 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG-~i~~~~~~g~---~v-~~~~~~~~~~~~~l~~~~l~------------~--~~~ 93 (185)
+..|+.++++|||||||||++.++- ...+....+. ++ |........++.+...++.. + ..+
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~ 185 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNK 185 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTT
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCC
Confidence 4567899999999999999877771 1111110011 11 21111111222222222211 0 123
Q ss_pred cCcCccHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHh-c-CCCeEEE-ecCh-hHHHHhhccc
Q psy5297 94 RGISTFMMEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELAS-N-RQPFTLF-ATHF-HEIALLSRVI 168 (185)
Q Consensus 94 ~~~~~lS~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~-~-~~~~vii-~tH~-~~~~~~~d~~ 168 (185)
..+.-++.|+.++..+++.+ .+++++++|||.. -.+|.......+ +.+.+ . ...++++ +||+ ..+.++.+..
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~--R~ld~d~~~~~l-~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHE--RTLATDILMGLL-KQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGG--CCHHHHHHHHHH-HHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccc--cccchHHHHHHH-HHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 44567899999999988887 9999999999942 134544333322 33322 1 2345666 5998 7777777654
Q ss_pred cce
Q psy5297 169 PTF 171 (185)
Q Consensus 169 ~~l 171 (185)
.++
T Consensus 263 ~vi 265 (773)
T 2xau_A 263 PLL 265 (773)
T ss_dssp CEE
T ss_pred Ccc
Confidence 433
No 154
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.67 E-value=1.4e-08 Score=76.15 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=28.3
Q ss_pred ceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.++++++.+| +++|+||||||||||+++|..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 6889999988 999999999999999999943
No 155
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.67 E-value=1.5e-09 Score=94.56 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=27.5
Q ss_pred ceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
+.+++++.++..++|.|++||||||++++|
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~l 187 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAM 187 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHH
Confidence 357888889999999999999999999998
No 156
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=1.2e-08 Score=77.80 Aligned_cols=38 Identities=26% Similarity=0.367 Sum_probs=22.6
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+..++++|+||++.+|++++|+||+||||||+.+.|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34679999999999999999999999999999999943
No 157
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.63 E-value=7.5e-11 Score=99.80 Aligned_cols=60 Identities=10% Similarity=-0.031 Sum_probs=41.7
Q ss_pred CC--eEEEEeCCCCCCCcCChhHHHHHH--HHHH-HhcCCCeEEEecCh-hHHHHhhcccc-ceeee-eEEEEe
Q psy5297 115 EN--SLVIIDELGRGTSTFDGFGMACSI--AREL-ASNRQPFTLFATHF-HEIALLSRVIP-TFRNV-HESKYL 180 (185)
Q Consensus 115 ~p--~llllDEP~~g~~~~d~~~~~~~i--l~~l-~~~~~~~vii~tH~-~~~~~~~d~~~-~l~~g-~i~~~~ 180 (185)
+| ++.++||| +...|...+...+ ++.+ .+ .|.|++ +|. .++.++|+++. +|.+| +++..+
T Consensus 139 dP~~di~ildee---l~~~D~~~~~k~~~~l~~~~~~-~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~ 206 (392)
T 1ni3_A 139 DPIRDLSIIVDE---LLIKDAEFVEKHLEGLRKITSR-GANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKG 206 (392)
T ss_dssp CHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTTCC-SSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGS
T ss_pred Ccchhhhhchhh---hHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccHHHHHHHHHHHHHHhccCCceeecC
Confidence 67 88888888 6667766554433 2333 32 466653 998 88899999998 89999 765443
No 158
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.62 E-value=2.5e-09 Score=85.30 Aligned_cols=50 Identities=14% Similarity=-0.000 Sum_probs=33.6
Q ss_pred eEEEccc-CCceeeecCCceeeeceEEEeeCC---ceeEEEEccCCCcHHHHHHHHHH
Q psy5297 5 TLVLNQC-RHPIVELQGGVSYIPNDVYFKSGE---VSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 5 ~~~~~~~-~~~~l~~~~~~~~il~~isl~i~~---g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.++++++ +..| ++...+++|+||++.+ |++++|+|++||||||+.+.|..
T Consensus 17 ~l~~~~~~~~~~----~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 17 LLETGSLLHSPF----DEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEcceeeEEe----cCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4666666 5544 1235699999999999 99999999999999999999943
No 159
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.60 E-value=5.6e-08 Score=80.65 Aligned_cols=125 Identities=10% Similarity=0.028 Sum_probs=76.9
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-hhCceecCCCCCcchhhHHH---hhcCcccccccCcCccH
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIF---TRVGAADSQYRGISTFM 100 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-~~g~~v~~~~~~~~~~~~~l---~~~~l~~~~~~~~~~lS 100 (185)
-|+.+.-.+.+|+++.|.|++|+|||||+..+..-.... ....|+.-+-..-.....++ ..+++.... -+.||
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~---~g~Ls 111 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLE---SGRLD 111 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHH---HTCCC
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHh---cCCCC
Confidence 455555578999999999999999999998885432221 11113322211111222222 222222222 24799
Q ss_pred HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcC-CCeEEEecCh
Q psy5297 101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNR-QPFTLFATHF 158 (185)
Q Consensus 101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~-~~~vii~tH~ 158 (185)
.++.+++..|... .++++++.|+|.. +...+...+ ++++++. +..+|++.|.
T Consensus 112 ~~e~~~l~~a~~~l~~~~l~I~d~~~~-----si~~i~~~i-r~l~~~~gg~~lIVIDyL 165 (338)
T 4a1f_A 112 DDQWENLAKCFDHLSQKKLFFYDKSYV-----RIEQIRLQL-RKLKSQHKELGIAFIDYL 165 (338)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEECCTTC-----CHHHHHHHH-HHHHHHCTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCeEEeCCCCC-----cHHHHHHHH-HHHHHhcCCCCEEEEech
Confidence 9999999977766 7889999999932 234444433 5665545 7888888763
No 160
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.58 E-value=3.7e-09 Score=80.90 Aligned_cols=116 Identities=18% Similarity=0.176 Sum_probs=57.6
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHHHHhhCc-eecCCC-------CCcchhhHHHhhcCcccccccCcCccHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGVSVFLAQIGC-FVPCDS-------ATISVVDQIFTRVGAADSQYRGISTFMMEMKETATV 109 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~-~v~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~i 109 (185)
+++|+|||||||||+.+.|.. .|. ++..+. ..-..+.++.+.+|.... .+.|+.+|..+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~------lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~-------~~~g~~~r~~l 70 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD------LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQIL-------TEQGELNRAAL 70 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT------TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC-------------CHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH------CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHh-------ccCccccHHHH
Confidence 689999999999999999944 121 111110 011234455555653211 24567777777
Q ss_pred HHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-hHH--HHhhcccccee
Q psy5297 110 IKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-HEI--ALLSRVIPTFR 172 (185)
Q Consensus 110 a~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~~~--~~~~d~~~~l~ 172 (185)
++.. .+|.....+|- ..++. ....+.+.+....+..+|+.+|. .+. ...||.+++++
T Consensus 71 ~~~~f~~~~~~~~l~~-----~~~p~-v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 71 RERVFNHDEDKLWLNN-----LLHPA-IRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp HHHHHTCHHHHHHHHH-----HHHHH-HHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred HHHHhCCHHHHHHHHh-----ccCHH-HHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 7765 66543222211 01111 11222233332235577778886 443 45677777664
No 161
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.57 E-value=2.1e-08 Score=76.79 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=20.6
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
++|++++|+||||||||||+|+|..
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999999943
No 162
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.56 E-value=8.5e-09 Score=84.27 Aligned_cols=35 Identities=20% Similarity=0.102 Sum_probs=31.6
Q ss_pred eeeceEEEee-------------------CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 24 YIPNDVYFKS-------------------GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 24 ~il~~isl~i-------------------~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
++++++++.+ ++|++++|+||||||||||+++|..
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4788888887 8999999999999999999999944
No 163
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.53 E-value=3.8e-08 Score=74.78 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=23.4
Q ss_pred EeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 31 FKSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 31 l~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+++++|++++|+|||||||||+++.|..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999999943
No 164
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.51 E-value=3.9e-08 Score=74.30 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.9
Q ss_pred ceeEEEEccCCCcHHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
|++++|+||||||||||+|+|..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 57899999999999999999943
No 165
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.44 E-value=2.8e-07 Score=75.53 Aligned_cols=127 Identities=9% Similarity=0.058 Sum_probs=75.3
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-hhCceecCCCCCcchhhHHHh---hcCcccccccCcCccH
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFT---RVGAADSQYRGISTFM 100 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-~~g~~v~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~lS 100 (185)
.|+++.-.+.+|+++.|.|+.|+|||||+..+..-.... .-..|+.-+...-.....++. .+.+....+ ....||
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~-~~~~l~ 135 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKA-ARRDFA 135 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHS-CHHHHC
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhc-CCCCCC
Confidence 466666568999999999999999999988884322211 111133332211112223322 222222221 112388
Q ss_pred HHHHHHHHHHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCe--EEEecCh
Q psy5297 101 MEMKETATVIKKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPF--TLFATHF 158 (185)
Q Consensus 101 ~g~~q~~~ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~--vii~tH~ 158 (185)
.++++++..|... .++++++.|+|. .+...+...+ +.+.++.+.. +|++.|.
T Consensus 136 ~~~~~~l~~a~~~l~~~~i~i~d~~~-----~~~~~i~~~i-~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 136 SEDWGKLSMAIGEISNSNINIFDKAG-----QSVNYIWSKT-RQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp SSCHHHHHHHHHHHHTSCEEEECCSC-----CBHHHHHHHH-HHHHHTSSSCCEEEEEECG
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCCC-----CCHHHHHHHH-HHHHHhcCCCCeEEEEeCc
Confidence 8888888877665 677899999883 2344454444 5555545777 8888774
No 166
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.42 E-value=1e-07 Score=71.60 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=22.1
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+|++++|+||||||||||++.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999999944
No 167
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.42 E-value=2.9e-07 Score=75.77 Aligned_cols=121 Identities=7% Similarity=0.094 Sum_probs=59.9
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHHHHHHH---hhC-ceecCCC--CCcchhhHHHhhcCcccccccCcCccHHHH-HHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLA---QIG-CFVPCDS--ATISVVDQIFTRVGAADSQYRGISTFMMEM-KET 106 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~---~~g-~~v~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~-~q~ 106 (185)
..+..+.|.||+|+|||||++.+....-.. ... .++.... .....+..++..++... +....+..+ .++
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~ 118 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKV----PFTGLSIAELYRR 118 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCC----CSSSCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCC----CCCCCCHHHHHHH
Confidence 457899999999999999999995432221 111 1222211 11123444444443321 111122222 222
Q ss_pred HH-HHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHH--hcCCCeEEEecChh
Q psy5297 107 AT-VIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA--SNRQPFTLFATHFH 159 (185)
Q Consensus 107 ~~-ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~--~~~~~~vii~tH~~ 159 (185)
+. .+.....|.++++||+....+..+...+.. +++.+. ...+.++|++||+.
T Consensus 119 l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~-l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 119 LVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYK-LSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHH-HHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHhccCCeEEEEEcChhhhhccCcCHHHHH-HhhchhhcCCCeEEEEEEECCC
Confidence 22 222224599999999944332222232322 334442 22367788899963
No 168
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.41 E-value=6.1e-07 Score=74.19 Aligned_cols=116 Identities=7% Similarity=-0.062 Sum_probs=60.8
Q ss_pred Cce--eEEEEccCCCcHHHHHHHHHHHHHHH-hhC-ceecCCCC--CcchhhHHHhhcCcccccccCcCccHHHH-HHHH
Q psy5297 35 EVS--FNLVTGPNMGGKSTYIRSIGVSVFLA-QIG-CFVPCDSA--TISVVDQIFTRVGAADSQYRGISTFMMEM-KETA 107 (185)
Q Consensus 35 ~g~--~~~l~G~NGsGKSTLlk~iG~i~~~~-~~g-~~v~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~lS~g~-~q~~ 107 (185)
.+. .+.|.||+|+|||||++.+....... ... .++.+... ....+..++..++... +....+.++ .+++
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~l 116 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPF----PRRGLSRDEFLALL 116 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCC----CSSCCCHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccC----CCCCCCHHHHHHHH
Confidence 446 89999999999999999995432111 111 13332221 1234555555554321 111122221 2222
Q ss_pred -HHHHhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHH--hc---CCCeEEEecChh
Q psy5297 108 -TVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELA--SN---RQPFTLFATHFH 159 (185)
Q Consensus 108 -~ia~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~--~~---~~~~vii~tH~~ 159 (185)
..+.....|.++++||+..- +...+.. +...+. .. .+.++|++||+.
T Consensus 117 ~~~l~~~~~~~vlilDE~~~l----~~~~~~~-L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 117 VEHLRERDLYMFLVLDDAFNL----APDILST-FIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHTTCCEEEEEETGGGS----CHHHHHH-HHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHhhcCCeEEEEEECcccc----chHHHHH-HHHHHHhCCCCCcCCEEEEEEECCc
Confidence 22333366899999999333 4333332 323321 11 367888899974
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.41 E-value=1.2e-07 Score=72.40 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=22.1
Q ss_pred EEeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297 30 YFKSGEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 30 sl~i~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
.++.++|++++|+|||||||||++|+|.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3566789999999999999999999994
No 170
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.40 E-value=1.3e-06 Score=74.59 Aligned_cols=100 Identities=15% Similarity=0.036 Sum_probs=53.2
Q ss_pred CceeEEEEccCCCcHHHHHHHHHHHHHHHhhC---ceecCCCCCcchhhHH---HhhcCcccccccCcCccHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG---CFVPCDSATISVVDQI---FTRVGAADSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g---~~v~~~~~~~~~~~~~---l~~~~l~~~~~~~~~~lS~g~~q~~~ 108 (185)
++.+++++||||+||||++..|+...- ..| .++..+......++.+ .+..++.-....... ..-...+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~--~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~--dp~~i~~~a 171 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK--KRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQ--NPIEIAKKG 171 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCS--CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccC--CHHHHHHHH
Confidence 579999999999999999999975432 222 1444443322222222 233343211111111 111112234
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHH
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMAC 138 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~ 138 (185)
++.+. .+++++|+|+|...-.+.|...+.+
T Consensus 172 l~~a~~~~~DvvIIDTaGr~~~~~d~~lm~e 202 (433)
T 3kl4_A 172 VDIFVKNKMDIIIVDTAGRHGYGEETKLLEE 202 (433)
T ss_dssp HHHTTTTTCSEEEEEECCCSSSCCTTHHHHH
T ss_pred HHHHHhcCCCEEEEECCCCccccCCHHHHHH
Confidence 55555 7899999999943221155444433
No 171
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.38 E-value=7.4e-07 Score=73.30 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=30.4
Q ss_pred eceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
+.+++|+.+++++++++||||+||||++..|+..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999999999999654
No 172
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.38 E-value=2.6e-07 Score=67.74 Aligned_cols=32 Identities=34% Similarity=0.477 Sum_probs=25.0
Q ss_pred eEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH
Q psy5297 28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 60 (185)
Q Consensus 28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~ 60 (185)
+.++++.+ .+.+|+|||||||||++.+|.-+.
T Consensus 16 ~~~i~f~~-g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence 34455554 589999999999999999996543
No 173
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.36 E-value=1.3e-06 Score=72.35 Aligned_cols=127 Identities=12% Similarity=0.071 Sum_probs=67.2
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHHHHHH-------HhhCceecCCCC-CcchhhHHHhhcCcccc--ccc-C-cCcc
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-------AQIGCFVPCDSA-TISVVDQIFTRVGAADS--QYR-G-ISTF 99 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-------~~~g~~v~~~~~-~~~~~~~~l~~~~l~~~--~~~-~-~~~l 99 (185)
.+++|+++.|.||+|+|||||+..+..-... .....|+..+.. ....+..++..++.... .++ . ....
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 4689999999999999999999988532111 111125544432 22234445555554321 000 0 0111
Q ss_pred HHHH-HHHHH----HHHhC-CCCeEEEEeCCCCCCCcC-C-------hh-HHHHHH--HHHHHhcCCCeEEEecCh
Q psy5297 100 MMEM-KETAT----VIKKC-TENSLVIIDELGRGTSTF-D-------GF-GMACSI--ARELASNRQPFTLFATHF 158 (185)
Q Consensus 100 S~g~-~q~~~----ia~~l-~~p~llllDEP~~g~~~~-d-------~~-~~~~~i--l~~l~~~~~~~vii~tH~ 158 (185)
+.++ .+.+. +++.. .+++++++|++++-.... + .. .+.+.+ +..++++.+++||+++|.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 2222 22222 23333 579999999995432211 0 00 122222 344555579999999995
No 174
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.35 E-value=4.1e-08 Score=85.64 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=30.9
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
.+++++++.+++|+.++|+|||||||||||++|
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL 280 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAI 280 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHH
Confidence 367889999999999999999999999999998
No 175
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.34 E-value=1.1e-07 Score=77.33 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=23.0
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHH--------HHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVF 61 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~i--------G~i~~ 61 (185)
++..|++++|+||||||||||+|+| |.+.+
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 4457899999999999999999999 66665
No 176
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.33 E-value=1.6e-07 Score=78.02 Aligned_cols=115 Identities=17% Similarity=0.083 Sum_probs=63.0
Q ss_pred CceeEEEEccCCCcHHHHHHHH-HHHHHHHhhCceecCCCCCcc--hh---hHHHhhcCcccccccCcCccHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSI-GVSVFLAQIGCFVPCDSATIS--VV---DQIFTRVGAADSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~i-G~i~~~~~~g~~v~~~~~~~~--~~---~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ 108 (185)
..-.++++|+||+|||||++.+ |.- ...+ ..|....... .+ ..-+..++.....+.+...++.+++|.+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~---~~~~-~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 241 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK---PEIA-SYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAIL 241 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC---CEEE-CCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CccC-CCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHH
Confidence 3457999999999999999998 211 0111 0010000000 00 00112233333344566778899988776
Q ss_pred HHHhC-CCCeEEEEe-CCCCCCCcCChhHHHHHHHHHHHhcC-CCeEEEec--Ch
Q psy5297 109 VIKKC-TENSLVIID-ELGRGTSTFDGFGMACSIARELASNR-QPFTLFAT--HF 158 (185)
Q Consensus 109 ia~~l-~~p~llllD-EP~~g~~~~d~~~~~~~il~~l~~~~-~~~vii~t--H~ 158 (185)
+... .++-++++| +|..+ ++.......+ ..+.+.. +..++++. ||
T Consensus 242 -~~~~~ad~illV~D~s~~~~---~~~~~~~~~~-~~i~~~~~~~piilV~NK~D 291 (357)
T 2e87_A 242 -ALRYLGNLIIYIFDPSEHCG---FPLEEQIHLF-EEVHGEFKDLPFLVVINKID 291 (357)
T ss_dssp -GGGGTCSEEEEEECTTCTTS---SCHHHHHHHH-HHHHHHTTTSCEEEEECCTT
T ss_pred -HHHhcCCEEEEEEeCCcccc---CCHHHHHHHH-HHHHHhcCCCCEEEEEECcc
Confidence 4444 788899999 88444 3434333333 3333212 66777766 66
No 177
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.33 E-value=4.4e-06 Score=69.64 Aligned_cols=137 Identities=12% Similarity=0.115 Sum_probs=72.6
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHHHHHHHH-hhCceecCCCCCcchhhHHHhhcCccc--ccccCcCccHHHHHHHHHH
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFTRVGAAD--SQYRGISTFMMEMKETATV 109 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-~~g~~v~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~lS~g~~q~~~i 109 (185)
+++|+++.|.||+|+|||||...+..-.... ....|+..+... .. .....++... ..-..+. +.. +...+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~-~~--~~a~~~g~~~~~l~i~~~~--~~e--~~~~~ 132 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-DP--IYARKLGVDIDNLLCSQPD--TGE--QALEI 132 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC-CH--HHHHHTTCCGGGCEEECCS--SHH--HHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc-cH--HHHHHcCCChhheeeeCCC--CHH--HHHHH
Confidence 6799999999999999999998874322221 112255554321 11 1234445431 1101111 122 23334
Q ss_pred HHhC---CCCeEEEEeCCCCCCCcC-------C----hh--HHHHHH--HHHHHhcCCCeEEEecCh-hH----------
Q psy5297 110 IKKC---TENSLVIIDELGRGTSTF-------D----GF--GMACSI--ARELASNRQPFTLFATHF-HE---------- 160 (185)
Q Consensus 110 a~~l---~~p~llllDEP~~g~~~~-------d----~~--~~~~~i--l~~l~~~~~~~vii~tH~-~~---------- 160 (185)
++.+ ..++++++|++..-.... + .. .+.+.+ +..+.++.+++||+++|. ..
T Consensus 133 ~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~ 212 (356)
T 1u94_A 133 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPET 212 (356)
T ss_dssp HHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------
T ss_pred HHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcc
Confidence 4433 679999999995544211 1 01 112222 222234469999999995 32
Q ss_pred ------HHHhhccccceeeeeE
Q psy5297 161 ------IALLSRVIPTFRNVHE 176 (185)
Q Consensus 161 ------~~~~~d~~~~l~~g~i 176 (185)
+..++|-++.++..+.
T Consensus 213 ~~gG~~l~~~advrl~l~r~~~ 234 (356)
T 1u94_A 213 TTGGNALKFYASVRLDIRRIGA 234 (356)
T ss_dssp CTTCSHHHHHCSEEEEEEEEEE
T ss_pred cCCCcceeeeccEEEEEEEeee
Confidence 3446776666665543
No 178
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.32 E-value=8.7e-08 Score=80.61 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=32.1
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
.+++++++++++|++++|+||||||||||+++|.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999999999999999994
No 179
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.30 E-value=3.1e-07 Score=70.59 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=22.8
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
++|++++|+|||||||||+++.|..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHh
Confidence 5799999999999999999999943
No 180
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.29 E-value=1.2e-07 Score=72.30 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=29.8
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
+.+..++..++|++++|+|||||||||++|.|...
T Consensus 14 ~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 14 KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45666777789999999999999999999999543
No 181
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.28 E-value=7.6e-09 Score=91.86 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=34.1
Q ss_pred CceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 21 GVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 21 ~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+...+++++++.+.+|+.++|+||||+|||||+++|..
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 34558899999999999999999999999999999954
No 182
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.27 E-value=1.7e-07 Score=79.79 Aligned_cols=30 Identities=33% Similarity=0.293 Sum_probs=26.7
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
+++++ +. .+|++++|+|||||||||||++|
T Consensus 158 ~L~~l-~~-~~ggii~I~GpnGSGKTTlL~al 187 (418)
T 1p9r_A 158 NFRRL-IK-RPHGIILVTGPTGSGKSTTLYAG 187 (418)
T ss_dssp HHHHH-HT-SSSEEEEEECSTTSCHHHHHHHH
T ss_pred HHHHH-HH-hcCCeEEEECCCCCCHHHHHHHH
Confidence 66777 54 78999999999999999999999
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.27 E-value=1.5e-06 Score=74.41 Aligned_cols=102 Identities=12% Similarity=0.107 Sum_probs=54.3
Q ss_pred ceeEEEEccCCCcHHHHHHHHHHHHHHHhhC---ceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG---CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK 112 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g---~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~ 112 (185)
+..+.|.||+|+|||||++.|+........+ .|+.... ....+...+. . + ..-.+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~----~~~~~~~~~~-----~--------~--~~~~~~~~ 190 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK----FLNDLVDSMK-----E--------G--KLNEFREK 190 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH----HHHHHHHHHH-----T--------T--CHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH----HHHHHHHHHH-----c--------c--cHHHHHHH
Confidence 4679999999999999999997644322111 1222111 0111111110 0 0 01123334
Q ss_pred CC-CCeEEEEeCCCCCCCc-CChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 113 CT-ENSLVIIDELGRGTST-FDGFGMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 113 l~-~p~llllDEP~~g~~~-~d~~~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
+. +|++|++||+..-... .....+.. .++.+.+ .+..+|++||+
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~-~l~~l~~-~~~~iIitt~~ 236 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFH-TFNELHD-SGKQIVICSDR 236 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHH-HHHHHHT-TTCEEEEEESS
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHH-HHHHHHH-CCCeEEEEECC
Confidence 44 8999999999432221 01111222 2355554 58899999996
No 184
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.24 E-value=3.2e-07 Score=71.55 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=25.0
Q ss_pred EEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 29 VYFKSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 29 isl~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
-+.+.++|++++|.|+|||||||++++|
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTT
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHH
Confidence 3445688999999999999999999999
No 185
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.23 E-value=6.3e-07 Score=72.93 Aligned_cols=66 Identities=5% Similarity=0.066 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcCC-hhHHHHHHHHHHHhcCCC--eEEEecCh-hHHHHhhcccc
Q psy5297 99 FMMEMKETATVIKKCTENSLVIIDELGRGTSTFD-GFGMACSIARELASNRQP--FTLFATHF-HEIALLSRVIP 169 (185)
Q Consensus 99 lS~g~~q~~~ia~~l~~p~llllDEP~~g~~~~d-~~~~~~~il~~l~~~~~~--~vii~tH~-~~~~~~~d~~~ 169 (185)
++.+++.....++....|.++++ +.+|... ...+... ++.+.+..+. .+.+++|+ ..+..+.+.+.
T Consensus 101 ~~~~~~~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~-l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDEMVLNKLREGKAPVILAV----NKVDNVQEKADLLPH-LQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHHHHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHH-HHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEE----ECcccCccHHHHHHH-HHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 88888755444443367888888 3455544 3333333 3666653453 55567776 66666666543
No 186
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.23 E-value=6.2e-07 Score=66.52 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=22.7
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+|++++|+|||||||||+++.|..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999999999944
No 187
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.18 E-value=3e-07 Score=72.42 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=29.8
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+++++++++++| ++|+||||+|||||+|+|+.
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHH
Confidence 4788899999998 99999999999999999954
No 188
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.17 E-value=8.9e-07 Score=68.03 Aligned_cols=28 Identities=11% Similarity=-0.009 Sum_probs=23.0
Q ss_pred EEeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297 30 YFKSGEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 30 sl~i~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
|+...+|++++|+||||||||||++.|-
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHH
Confidence 3444689999999999999999999984
No 189
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.17 E-value=5.7e-07 Score=73.28 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=23.2
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
++..|++++|+||||||||||+|+|.
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999999994
No 190
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.17 E-value=1.5e-06 Score=71.31 Aligned_cols=127 Identities=9% Similarity=0.094 Sum_probs=67.6
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-------hhCceecCCCC-CcchhhHHHhhcCcccc--ccc-C-cCcc
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-------QIGCFVPCDSA-TISVVDQIFTRVGAADS--QYR-G-ISTF 99 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-------~~g~~v~~~~~-~~~~~~~~l~~~~l~~~--~~~-~-~~~l 99 (185)
.+++|+++.|.||+|+|||||+..+..-.... ....|+..+.. ....+.+++..++.... .+. . ....
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 46789999999999999999998885322111 11125544432 12334445555655321 000 0 1112
Q ss_pred HHH-HHHHHHHHHhC----CCCeEEEEeCCCCCCCcC--------Chh-HHHHHH--HHHHHhcCCCeEEEecCh
Q psy5297 100 MME-MKETATVIKKC----TENSLVIIDELGRGTSTF--------DGF-GMACSI--ARELASNRQPFTLFATHF 158 (185)
Q Consensus 100 S~g-~~q~~~ia~~l----~~p~llllDEP~~g~~~~--------d~~-~~~~~i--l~~l~~~~~~~vii~tH~ 158 (185)
+.. +.+.+..++.+ .+++++++|+.++-.... +.. .+.+.+ +..+.++.+++||++.|.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 223 23344433332 479999999994422110 101 122222 344444469999999884
No 191
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.15 E-value=3e-07 Score=75.28 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=24.5
Q ss_pred EeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 31 FKSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 31 l~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
+++.+|++++|+||||+|||||+|+|
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L 193 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAI 193 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHh
Confidence 56778999999999999999999999
No 192
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.15 E-value=9.7e-07 Score=69.89 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=22.3
Q ss_pred CCceeEEEEccCCCcHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
++|++++|+|||||||||++|+|
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~L 47 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKAL 47 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999999
No 193
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.15 E-value=3.8e-07 Score=72.96 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=29.6
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+++++++++++| ++|+||||+|||||+++|+.
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHH
Confidence 4678899999988 89999999999999999954
No 194
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.15 E-value=1.5e-06 Score=66.66 Aligned_cols=32 Identities=34% Similarity=0.477 Sum_probs=24.8
Q ss_pred eEEEeeCCceeEEEEccCCCcHHHHHHHHHHHH
Q psy5297 28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSV 60 (185)
Q Consensus 28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~ 60 (185)
+.++++.+ .+.+|+|||||||||++.+|..+.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455554 699999999999999999995443
No 195
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.14 E-value=1.2e-06 Score=74.47 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=24.3
Q ss_pred EeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297 31 FKSGEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 31 l~i~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
+++.+|++++|+|||||||||||++|.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~ 47 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAIS 47 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 456779999999999999999999993
No 196
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.14 E-value=9.3e-07 Score=65.27 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.3
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+++++|+|||||||||+++.|..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999943
No 197
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.14 E-value=9.1e-06 Score=65.11 Aligned_cols=72 Identities=21% Similarity=0.191 Sum_probs=43.8
Q ss_pred CceeEEEEccCCCcHHHHHHHHHHHHHHHhhCc-eecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHhC
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGC-FVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKC 113 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~-~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~l 113 (185)
++..+.|.||+|+||||+++.+..-. +. ++.- ...+....... +.+++.+..+..+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~-----~~~~~~i---------------~~~~l~~~~~~--~~~~~~~~~~~~~~ 110 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC-----SATFLNI---------------SAASLTSKYVG--DGEKLVRALFAVAR 110 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT-----TCEEEEE---------------ESTTTSSSSCS--CHHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh-----CCCeEEe---------------eHHHHhhcccc--hHHHHHHHHHHHHH
Confidence 46789999999999999999995421 21 1110 00111111122 23455555555555
Q ss_pred -CCCeEEEEeCCCCCC
Q psy5297 114 -TENSLVIIDELGRGT 128 (185)
Q Consensus 114 -~~p~llllDEP~~g~ 128 (185)
.+|.++++||+-+-.
T Consensus 111 ~~~~~vl~iDEid~l~ 126 (297)
T 3b9p_A 111 HMQPSIIFIDEVDSLL 126 (297)
T ss_dssp HTCSEEEEEETGGGTS
T ss_pred HcCCcEEEeccHHHhc
Confidence 889999999995543
No 198
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.12 E-value=8.8e-08 Score=75.24 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.6
Q ss_pred EEeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297 30 YFKSGEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 30 sl~i~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
++++++ ++++|+|||||||||||++|.
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~ 48 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFV 48 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHH
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHh
Confidence 566665 899999999999999999993
No 199
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.12 E-value=1.1e-05 Score=62.94 Aligned_cols=126 Identities=17% Similarity=0.128 Sum_probs=69.5
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH-HHHHHhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHHh
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV-SVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKK 112 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~-i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~~ 112 (185)
.+|.++.++||-|+||||++..+.. ........ ++++......-...+..++|+.... ...... .+....++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kV-li~~~~~d~r~~~~i~srlG~~~~~-~~~~~~----~~i~~~i~~ 83 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKY-LVFKPKIDTRSIRNIQSRTGTSLPS-VEVESA----PEILNYIMS 83 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCE-EEEEECCCGGGCSSCCCCCCCSSCC-EEESST----HHHHHHHHS
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEE-EEEEeccCchHHHHHHHhcCCCccc-cccCCH----HHHHHHHHH
Confidence 4689999999999999998755532 21111112 3332111100112345555653211 112222 122222332
Q ss_pred -C--CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecC---------h--hHHHHhhcccccee
Q psy5297 113 -C--TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATH---------F--HEIALLSRVIPTFR 172 (185)
Q Consensus 113 -l--~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH---------~--~~~~~~~d~~~~l~ 172 (185)
+ .+++++++||- -. ++.. ..+. +..+.. .+..||++-| . ..+..+||++.-|+
T Consensus 84 ~~~~~~~dvViIDEa---Q~-l~~~-~ve~-l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 84 NSFNDETKVIGIDEV---QF-FDDR-ICEV-ANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTSCTTCCEEEECSG---GG-SCTH-HHHH-HHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred HhhCCCCCEEEEecC---cc-CcHH-HHHH-HHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 2 46899999999 22 3433 3333 366666 5999999999 3 46777899887654
No 200
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.11 E-value=2.1e-05 Score=61.17 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.2
Q ss_pred eCCceeEEEEccCCCcHHHHHHHH
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
+.+|+.+++.||+||||||++..+
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHH
Confidence 356899999999999999998876
No 201
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.10 E-value=1.7e-06 Score=66.06 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=23.9
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.++|.+++|+|+|||||||+++.|..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999999954
No 202
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.10 E-value=6.4e-06 Score=63.25 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.2
Q ss_pred CceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
.+..+.|.||.|+|||||++.+..-
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999999654
No 203
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=98.06 E-value=2.7e-05 Score=66.47 Aligned_cols=127 Identities=11% Similarity=0.060 Sum_probs=71.8
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHh--hCceecCCCCCcchhhHHHh-hcCcccccccCcCccHH
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ--IGCFVPCDSATISVVDQIFT-RVGAADSQYRGISTFMM 101 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~--~g~~v~~~~~~~~~~~~~l~-~~~l~~~~~~~~~~lS~ 101 (185)
.|+.+.-.+.+|+++.|.|++|+|||||+..+..-....+ -..|+.-+...-.....++. ..++... .-.-+.++.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~-~l~~g~l~~ 267 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMN-RVRLGQLTD 267 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTT-TCCGGGCCH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHH-HHhCCCCCH
Confidence 3444444578999999999999999999988854332211 11133332211112333321 2233211 111246888
Q ss_pred HHHHHHHHHHh-CCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh
Q psy5297 102 EMKETATVIKK-CTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 102 g~~q~~~ia~~-l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~ 158 (185)
++.+++.-+.. +...++++.|+| . .+...+...+ +.+.++.+..+|++.+.
T Consensus 268 ~~~~~~~~a~~~l~~~~l~i~d~~---~--~s~~~l~~~~-~~l~~~~~~~lIvID~l 319 (444)
T 2q6t_A 268 RDFSRLVDVASRLSEAPIYIDDTP---D--LTLMEVRARA-RRLVSQNQVGLIIIDYL 319 (444)
T ss_dssp HHHHHHHHHHHHHHTSCEEEECCT---T--CBHHHHHHHH-HHHHHHSCCCEEEEECG
T ss_pred HHHHHHHHHHHHHhcCCEEEECCC---C--CCHHHHHHHH-HHHHHHcCCCEEEEcCh
Confidence 88888775544 355678888877 2 2334444433 55554457888887663
No 204
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.05 E-value=2.3e-06 Score=65.28 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=31.0
Q ss_pred EEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCC
Q psy5297 30 YFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSA 74 (185)
Q Consensus 30 sl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~ 74 (185)
-=++++|.+++|+|++||||||+.+.|.... ..+. +++++..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~--~~~~-~i~~D~~ 56 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL--PNCS-VISQDDF 56 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS--TTEE-EEEGGGG
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc--CCcE-EEeCCcc
Confidence 3456789999999999999999999985421 1233 6666653
No 205
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.02 E-value=1.2e-06 Score=76.31 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=30.3
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
.++++++++.+| +.+|+|+|||||||||.+|..+
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 567899999988 9999999999999999999543
No 206
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.02 E-value=7.2e-07 Score=73.46 Aligned_cols=37 Identities=16% Similarity=0.046 Sum_probs=29.5
Q ss_pred eeeeceEEEeeCCce------eEEEEccCCCcHHHHHHHHHHH
Q psy5297 23 SYIPNDVYFKSGEVS------FNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 23 ~~il~~isl~i~~g~------~~~l~G~NGsGKSTLlk~iG~i 59 (185)
...+.+++..+.+++ +++|+||||||||||+++|...
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 346666777765555 9999999999999999999553
No 207
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.01 E-value=1.4e-06 Score=76.45 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=30.2
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
++.++++++ +|++++|+||||+|||||+|+|...
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 677888887 7999999999999999999999654
No 208
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.01 E-value=1.1e-05 Score=60.98 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=20.5
Q ss_pred eeEEEEccCCCcHHHHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
..+.|.||+|+|||||++.+..-
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999653
No 209
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.00 E-value=7.8e-05 Score=62.32 Aligned_cols=136 Identities=15% Similarity=0.205 Sum_probs=72.6
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHHHHHHH-HhhCceecCCCCCcchhhHHHhhcCccc--ccccCcCccHHHHHHHHHH
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFL-AQIGCFVPCDSATISVVDQIFTRVGAAD--SQYRGISTFMMEMKETATV 109 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~-~~~g~~v~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~lS~g~~q~~~i 109 (185)
+++|+++.|.||.|+|||||...+..-... .....|+..+... ... ....++++. ..-..+.+ .. +.+.+
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~-~~~--~a~~~g~d~~~l~i~~~~~--~e--~~l~~ 143 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL-DPV--YARALGVNTDELLVSQPDN--GE--QALEI 143 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC-CHH--HHHHTTCCGGGCEEECCSS--HH--HHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh-hHH--HHHHcCCCHHHceeecCCc--HH--HHHHH
Confidence 578999999999999999998887432222 1122355554322 111 244455431 11111222 22 23334
Q ss_pred HHhC---CCCeEEEEeCCCCCCCc--CCh-----------hHHHHHH--HHHHHhcCCCeEEEecCh-hH----------
Q psy5297 110 IKKC---TENSLVIIDELGRGTST--FDG-----------FGMACSI--ARELASNRQPFTLFATHF-HE---------- 160 (185)
Q Consensus 110 a~~l---~~p~llllDEP~~g~~~--~d~-----------~~~~~~i--l~~l~~~~~~~vii~tH~-~~---------- 160 (185)
++.+ ..++++++|....=... .+. ..+.+.+ +..+.++.+++||++.|. ..
T Consensus 144 l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~ 223 (366)
T 1xp8_A 144 MELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPET 223 (366)
T ss_dssp HHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-------------
T ss_pred HHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCccc
Confidence 4433 57999999999654321 110 1122222 233345579999999885 32
Q ss_pred ------HHHhhccccceeeee
Q psy5297 161 ------IALLSRVIPTFRNVH 175 (185)
Q Consensus 161 ------~~~~~d~~~~l~~g~ 175 (185)
+...||.++.++...
T Consensus 224 ~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 224 TTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp --CHHHHHHHCSEEEEEEEES
T ss_pred cCCcchhhheeeEEEEEEecc
Confidence 244566666666544
No 210
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.99 E-value=4.5e-06 Score=67.95 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=22.2
Q ss_pred CceeEEEEccCCCcHHHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGVSV 60 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~i~ 60 (185)
.+..+.|.||+|+|||||++.++.-.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35679999999999999999997543
No 211
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.98 E-value=3.6e-06 Score=65.79 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=24.1
Q ss_pred eeceEEEeeC---CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 25 IPNDVYFKSG---EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 25 il~~isl~i~---~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
-+.++++.+. +|.+++|.||+||||||+++.|..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4677777776 899999999999999999999965
No 212
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.94 E-value=1.6e-05 Score=64.88 Aligned_cols=142 Identities=13% Similarity=0.095 Sum_probs=74.1
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-----------------hhCceecCCCC-CcchhhHHHhhcCcccc--
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-----------------QIGCFVPCDSA-TISVVDQIFTRVGAADS-- 91 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-----------------~~g~~v~~~~~-~~~~~~~~l~~~~l~~~-- 91 (185)
.+++|+++.|.||+|+|||||...+..-.... ....|+..+.. ....+.++++.++.+..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 36789999999999999999998885321111 11124444332 12334445555555321
Q ss_pred ccc-C-cCccHHHH-HHHHH-HHHhC---CCCeEEEEeCCCCCCCc-C-------Chh-HHHHHH--HHHHHhcCCCeEE
Q psy5297 92 QYR-G-ISTFMMEM-KETAT-VIKKC---TENSLVIIDELGRGTST-F-------DGF-GMACSI--ARELASNRQPFTL 153 (185)
Q Consensus 92 ~~~-~-~~~lS~g~-~q~~~-ia~~l---~~p~llllDEP~~g~~~-~-------d~~-~~~~~i--l~~l~~~~~~~vi 153 (185)
.++ . ....+..+ .+.+. +...+ .+++++++|....-... . +.. .+.+.+ +..+.++.+++||
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 000 0 11122222 22232 22222 46899999998432111 0 111 122222 3444455799999
Q ss_pred EecCh-hH----------------HHHhhccccceee
Q psy5297 154 FATHF-HE----------------IALLSRVIPTFRN 173 (185)
Q Consensus 154 i~tH~-~~----------------~~~~~d~~~~l~~ 173 (185)
++.|- .. +...+|.++.++.
T Consensus 254 ~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 254 VTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp EEECEECC-------CCEESSHHHHHHHCSEEEEEEE
T ss_pred EECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEe
Confidence 99883 22 4445676777653
No 213
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.92 E-value=5.4e-06 Score=62.22 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=25.2
Q ss_pred eEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
++|++..++..++|+|+.||||||+.+.+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999999999998865
No 214
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.91 E-value=5.8e-06 Score=61.52 Aligned_cols=26 Identities=19% Similarity=0.049 Sum_probs=22.9
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
.+|++++|+|++||||||+.+.+...
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999653
No 215
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.91 E-value=1.3e-05 Score=73.46 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=24.4
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+++++.++|+||+|+|||||+|+|+.
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 567899999999999999999999954
No 216
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.88 E-value=4.3e-06 Score=73.55 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=24.7
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+++|++++|+|+||||||||+|+|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHH
Confidence 567999999999999999999999954
No 217
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.88 E-value=2.6e-06 Score=70.45 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=32.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+.+++++++...++.+++++|+||+|||||++.|..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 347889999999999999999999999999999954
No 218
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.87 E-value=7.2e-06 Score=63.05 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=19.8
Q ss_pred ceeEEEEccCCCcHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~i 56 (185)
+.+++|+||+||||||+.+.|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 568999999999999999999
No 219
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.87 E-value=0.00016 Score=59.42 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=63.1
Q ss_pred eCCceeEEEEccCCCcHHHHHHHH-HHHHHH--HhhCceecCCCCCcchhhHHHhhcCccc--ccccCcCccHHHHHHHH
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSI-GVSVFL--AQIGCFVPCDSATISVVDQIFTRVGAAD--SQYRGISTFMMEMKETA 107 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~i-G~i~~~--~~~g~~v~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~lS~g~~q~~ 107 (185)
+++| ++.|.||.|+|||||+-.+ ....-. .....|+..+....+ ...+++|++. ..-..+. +.++ +.+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~---~ra~~lGvd~d~llv~~~~--~~E~-~~l 98 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP---AYLRSMGVDPERVIHTPVQ--SLEQ-LRI 98 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH---HHHHHTTCCGGGEEEEECS--BHHH-HHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH---HHHHHhCCCHHHeEEEcCC--CHHH-HHH
Confidence 5789 8999999999999996555 322211 111236655443222 2356667642 1111222 3333 223
Q ss_pred HHHHh---C--CCCeEEEEeCCCCCCCc--CCh-------------hHHHHHH--HHHHHhcCCCeEEEecCh
Q psy5297 108 TVIKK---C--TENSLVIIDELGRGTST--FDG-------------FGMACSI--ARELASNRQPFTLFATHF 158 (185)
Q Consensus 108 ~ia~~---l--~~p~llllDEP~~g~~~--~d~-------------~~~~~~i--l~~l~~~~~~~vii~tH~ 158 (185)
.++.. + .+|+++++|-..+=... .+. ..+.+.+ +..+.++.++++|++-|-
T Consensus 99 ~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 99 DMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp HHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 33322 3 57999999988543210 110 0111212 222344479999999986
No 220
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.83 E-value=8.5e-06 Score=61.25 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=18.1
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+||||||||++.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l 49 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRF 49 (191)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5899999999999999998
No 221
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.83 E-value=1.8e-05 Score=71.01 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=23.4
Q ss_pred EEeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297 30 YFKSGEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 30 sl~i~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
++++++++.++|+|+||+|||||++.+-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~ 30 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALL 30 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHH
Confidence 4567889999999999999999999983
No 222
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.82 E-value=8.7e-06 Score=61.68 Aligned_cols=21 Identities=29% Similarity=0.036 Sum_probs=19.2
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+++|+|+|||||||+.+.|..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999954
No 223
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.80 E-value=6.6e-05 Score=61.79 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=24.1
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
.+.+|.++.|.||.|+|||||...++.-
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4567888999999999999999998653
No 224
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.80 E-value=1.7e-05 Score=66.22 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=26.4
Q ss_pred ceEEEeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
.+..+++.+ .+++|+|||||||||+|.+|.-.
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~~ 48 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVFFA 48 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHHHH
Confidence 456666665 79999999999999999999653
No 225
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.80 E-value=0.00022 Score=69.73 Aligned_cols=137 Identities=12% Similarity=0.140 Sum_probs=74.6
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHHHHHHHHh-hCceecCCCCCcchhhHHHhhcCcc--cccccCcCccHHHHHHHHHH
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQ-IGCFVPCDSATISVVDQIFTRVGAA--DSQYRGISTFMMEMKETATV 109 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~-~g~~v~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~g~~q~~~i 109 (185)
+++|+++.|.||+|+|||||+..+..-..... ...|+..+... ... ..+.++++ ...-....++ . +....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~-~ql--~A~~lGvd~~~L~i~~~~~l--e--ei~~~ 801 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-DPI--YARKLGVDIDNLLCSQPDTG--E--QALEI 801 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC-CHH--HHHHTTCCGGGCEEECCSSH--H--HHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH-HHH--HHHHcCCChhheEEecCCcH--H--HHHHH
Confidence 68999999999999999999998854322211 11244333321 111 13444432 1111112222 1 23333
Q ss_pred HHhC---CCCeEEEEeCCCCCCC-------cCC------hhHHHHHH--HHHHHhcCCCeEEEecCh-hH----------
Q psy5297 110 IKKC---TENSLVIIDELGRGTS-------TFD------GFGMACSI--ARELASNRQPFTLFATHF-HE---------- 160 (185)
Q Consensus 110 a~~l---~~p~llllDEP~~g~~-------~~d------~~~~~~~i--l~~l~~~~~~~vii~tH~-~~---------- 160 (185)
++.+ ..|+++++|+...-.. +-+ ...+.+.+ +..+.++.+++||+++|. ..
T Consensus 802 l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~ 881 (1706)
T 3cmw_A 802 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPET 881 (1706)
T ss_dssp HHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEE
T ss_pred HHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCccc
Confidence 3322 6899999999955331 001 11122222 222344479999999993 22
Q ss_pred ------HHHhhccccceeeeeE
Q psy5297 161 ------IALLSRVIPTFRNVHE 176 (185)
Q Consensus 161 ------~~~~~d~~~~l~~g~i 176 (185)
+...+|.++.+++...
T Consensus 882 p~gs~~Leq~ADvvl~L~R~~~ 903 (1706)
T 3cmw_A 882 TTGGNALKFYASVRLDIRRIGA 903 (1706)
T ss_dssp ESSCSHHHHHEEEEEEEEEEEE
T ss_pred cCCcchhhheeeEEEEEEeccc
Confidence 4567788888865543
No 226
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.80 E-value=5.2e-05 Score=62.22 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=22.5
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
..+..+.|.||.|+||||+++.+..-
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999543
No 227
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.79 E-value=1e-05 Score=61.60 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.1
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
..+|.+++|+||+||||||+.+.|..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999999854
No 228
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.78 E-value=1.5e-05 Score=60.22 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.8
Q ss_pred CceeEEEEccCCCcHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~i 56 (185)
+|.++.++||.|+||||++.-+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSF 23 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHH
Confidence 4789999999999999997433
No 229
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.77 E-value=1.2e-05 Score=60.56 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=24.3
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHH
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGFGMACSIAREL 144 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l 144 (185)
.|+++ .+|.+.++| ++++++.....+.+.+.+.+
T Consensus 132 ~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 132 EARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35556 678888998 88888887777766554443
No 230
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.77 E-value=5.6e-05 Score=60.63 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.4
Q ss_pred eeEEEEccCCCcHHHHHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSIGVSV 60 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~iG~i~ 60 (185)
..+.|.||+|+||||+.+.|....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 579999999999999999997644
No 231
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.75 E-value=1.3e-05 Score=62.77 Aligned_cols=120 Identities=11% Similarity=0.015 Sum_probs=55.1
Q ss_pred CCcee-EEEEccCCCcHHHHHHHHHHHHHHHhhC-ceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHH
Q psy5297 34 GEVSF-NLVTGPNMGGKSTYIRSIGVSVFLAQIG-CFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK 111 (185)
Q Consensus 34 ~~g~~-~~l~G~NGsGKSTLlk~iG~i~~~~~~g-~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~ 111 (185)
.+|+. +.+.|+-|+||||++-.++.-....... .++..++..-.-...++. ++... ....-.+.+.......+..
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~--gl~~~-~~~~~~~~~~~~~e~~l~~ 79 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLN--GLPQQ-PLLRTEYRGMTLEEMDLDA 79 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHT--TSCBC-CCEEEEETTEEEEECCHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhc--Ccccc-CcceeecCCcccccccHHH
Confidence 35664 7789999999999987776544322111 122222211111111221 22110 0000011100000000111
Q ss_pred hC-CCCeEEEEeCCCCCCCcCChhH-HHHHHHHHHHhcCCCeEEEecCh
Q psy5297 112 KC-TENSLVIIDELGRGTSTFDGFG-MACSIARELASNRQPFTLFATHF 158 (185)
Q Consensus 112 ~l-~~p~llllDEP~~g~~~~d~~~-~~~~il~~l~~~~~~~vii~tH~ 158 (185)
++ ..|+++|+|||..--.+..... ..+.+ ..+.. .+..++.++|-
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV-~~~l~-sgidVitT~Nl 126 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDI-QELLA-AGIDVYTTVNV 126 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHH-HHHHH-TTCEEEEEEEG
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHH-HHHHc-CCCCEEEEccc
Confidence 12 4799999999965322222222 33333 33444 58889999884
No 232
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.74 E-value=6.1e-05 Score=64.49 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=26.3
Q ss_pred eceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
|+.+.-.+.+|+++.|.|+.|+|||||.-.+..
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 333333578999999999999999999887743
No 233
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.73 E-value=0.0003 Score=51.48 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=21.7
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
..+..+.|.||.|+||||+++.+..-
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999653
No 234
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.68 E-value=2.2e-05 Score=58.36 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.4
Q ss_pred CCceeEEEEccCCCcHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
.+|.+++|+|++||||||+.+.|.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999999994
No 235
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.67 E-value=2.4e-05 Score=58.44 Aligned_cols=29 Identities=17% Similarity=-0.004 Sum_probs=24.9
Q ss_pred EeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 31 FKSGEVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 31 l~i~~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
+...+|.+++|+|++||||||+.+.|...
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34467899999999999999999999653
No 236
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.65 E-value=0.00032 Score=68.64 Aligned_cols=136 Identities=12% Similarity=0.116 Sum_probs=74.4
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHHH-HHHHHhhCceecCCCCCcchhhHHHhhcCcc--cccccCcCccHHHHHHHHHH
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIGV-SVFLAQIGCFVPCDSATISVVDQIFTRVGAA--DSQYRGISTFMMEMKETATV 109 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG~-i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~g~~q~~~i 109 (185)
+++|+++.|.||.|+|||||.-.+.. .........|+..+...-.. ..+.++++ ...-..+. +.++ .+.+
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~---~a~~lGvd~~~L~i~~~~--~~e~--~l~~ 452 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPD--TGEQ--ALEI 452 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH---HHHHTTCCGGGCEEECCS--SHHH--HHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHH---HHHHcCCCHHHeEEcCCC--CHHH--HHHH
Confidence 67999999999999999999877732 22211122355544422221 24445543 11111222 2222 2233
Q ss_pred HHhC---CCCeEEEEeCCCCCCCc-------CC----hh--HHHHHH--HHHHHhcCCCeEEEecCh-h-----------
Q psy5297 110 IKKC---TENSLVIIDELGRGTST-------FD----GF--GMACSI--ARELASNRQPFTLFATHF-H----------- 159 (185)
Q Consensus 110 a~~l---~~p~llllDEP~~g~~~-------~d----~~--~~~~~i--l~~l~~~~~~~vii~tH~-~----------- 159 (185)
++.+ .+|+++++|....=... -+ .. .+.+.+ +..+.++.+++||+++|. .
T Consensus 453 l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~ 532 (1706)
T 3cmw_A 453 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPET 532 (1706)
T ss_dssp HHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEE
T ss_pred HHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCcc
Confidence 3322 68999999999543320 01 01 112222 222234479999999994 2
Q ss_pred -----HHHHhhccccceeeee
Q psy5297 160 -----EIALLSRVIPTFRNVH 175 (185)
Q Consensus 160 -----~~~~~~d~~~~l~~g~ 175 (185)
.+..+||-++.+....
T Consensus 533 p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 533 TTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp ESSCSHHHHHEEEEEEEEEEE
T ss_pred CCCCcceeeeCCEEEEEEecc
Confidence 2456788877776544
No 237
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.65 E-value=0.00027 Score=53.72 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=65.8
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecC--CCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC--DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK 111 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~ 111 (185)
.+|.++.++||-||||||.+--+..-...+..-.++.+ ...... ...+..+.|+... .....+.. .+..
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~-~~~i~s~~g~~~~-a~~~~~~~-------~i~~ 76 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYS-KEDVVSHMGEKEQ-AVAIKNSR-------EILK 76 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--------CEEECTTSCEEE-CEEESSST-------HHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccch-HHHHHhhcCCcee-eEeeCCHH-------HHHH
Confidence 56899999999999999876544221111111113332 111111 1223444444311 11112221 2333
Q ss_pred hC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-----------hHHHHhhcccccee
Q psy5297 112 KC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-----------HEIALLSRVIPTFR 172 (185)
Q Consensus 112 ~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-----------~~~~~~~d~~~~l~ 172 (185)
.+ .+.+++++||- -. ++... .+. ++.+.. .+..||++.++ .++..+||.+.-|+
T Consensus 77 ~~~~~~dvViIDEa---qf-l~~~~-v~~-l~~l~~-~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 77 YFEEDTEVIAIDEV---QF-FDDEI-VEI-VNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp HCCTTCSEEEECSG---GG-SCTHH-HHH-HHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred HHhccCCEEEEECC---CC-CCHHH-HHH-HHHHHh-CCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 44 45799999996 22 44333 333 466666 48999998872 46778888886543
No 238
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.61 E-value=3.3e-05 Score=59.06 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=25.3
Q ss_pred EeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 31 FKSGEVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 31 l~i~~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
+.+++|.+++|+|++||||||+.+.|...
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 44678999999999999999999999653
No 239
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.61 E-value=2.5e-05 Score=59.11 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.5
Q ss_pred ceeEEEEccCCCcHHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
..+++|+|++||||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999954
No 240
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.60 E-value=3.5e-05 Score=56.86 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.0
Q ss_pred CCceeEEEEccCCCcHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
++|..++|+|++|+|||||++.+
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l 24 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNAL 24 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 35788999999999999999998
No 241
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.59 E-value=3.4e-05 Score=63.92 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+++.+++|+|++|||||||++.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3478999999999999999999943
No 242
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.59 E-value=0.00031 Score=51.36 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=21.2
Q ss_pred CceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
....+.|.||.|+||||+++.+..-
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3566799999999999999999654
No 243
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.59 E-value=0.0004 Score=53.84 Aligned_cols=123 Identities=17% Similarity=0.150 Sum_probs=64.0
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCC--CCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDS--ATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIK 111 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia~ 111 (185)
.+|.+..++||=||||||.+--+..-...+..-.++++.. ..+. ...+..+.|+.-.. ..+.... .+..
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~g-e~~i~s~~g~~~~a-~~~~~~~-------~~~~ 96 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYS-EEDVVSHNGLKVKA-VPVSASK-------DIFK 96 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCE-EECSSGG-------GGGG
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcch-HHHHHhhcCCeeEE-eecCCHH-------HHHH
Confidence 6799999999999999998654432221111111444321 1111 12344555543111 1112221 2222
Q ss_pred hC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecC---------h--hHHHHhhcccccee
Q psy5297 112 KC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATH---------F--HEIALLSRVIPTFR 172 (185)
Q Consensus 112 ~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH---------~--~~~~~~~d~~~~l~ 172 (185)
.+ .+.+++++||- -- ++...+ +. ++.++. .+..||++-+ . ..+..+||.+.-|+
T Consensus 97 ~~~~~~dvViIDEa---QF-~~~~~V-~~-l~~l~~-~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 97 HITEEMDVIAIDEV---QF-FDGDIV-EV-VQVLAN-RGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp GCCSSCCEEEECCG---GG-SCTTHH-HH-HHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred HHhcCCCEEEEECc---cc-CCHHHH-HH-HHHHhh-CCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 33 35899999998 32 443433 43 466666 5899999988 3 56778888887554
No 244
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.58 E-value=0.00069 Score=57.96 Aligned_cols=94 Identities=16% Similarity=0.087 Sum_probs=49.1
Q ss_pred CceeEEEEccCCCcHHHHHHHHHHHHHHHhhC---ceecCCCCCcchhhH---HHhhcCcccccccCcCccHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIG---CFVPCDSATISVVDQ---IFTRVGAADSQYRGISTFMMEMKETAT 108 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g---~~v~~~~~~~~~~~~---~l~~~~l~~~~~~~~~~lS~g~~q~~~ 108 (185)
++.+++++|++|+||||+...|+...- +.| .++..+......++. +.+..++.-.......+ .. ..-+-+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~--~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~d-p~-~i~~~a 174 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ--KRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKD-AI-KLAKEG 174 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCC-HH-HHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCC-HH-HHHHHH
Confidence 468999999999999999998875332 223 244444433332222 22333332111111111 11 111122
Q ss_pred HHHhC-CCCeEEEEeCCCCCCCcCChh
Q psy5297 109 VIKKC-TENSLVIIDELGRGTSTFDGF 134 (185)
Q Consensus 109 ia~~l-~~p~llllDEP~~g~~~~d~~ 134 (185)
+..+- .+++++|+|.|. ..+.+..
T Consensus 175 l~~a~~~~~DvVIIDTaG--rl~~d~~ 199 (443)
T 3dm5_A 175 VDYFKSKGVDIIIVDTAG--RHKEDKA 199 (443)
T ss_dssp HHHHHHTTCSEEEEECCC--CSSCCHH
T ss_pred HHHHHhCCCCEEEEECCC--cccchHH
Confidence 33444 579999999884 4444433
No 245
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.58 E-value=0.00098 Score=50.33 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=19.3
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+.|.||.|+|||||++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999854
No 246
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.55 E-value=0.00011 Score=58.24 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.6
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
..+.-+.|.||.|+|||||.+.++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4566799999999999999999954
No 247
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.55 E-value=4.5e-05 Score=62.14 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=25.7
Q ss_pred eeceEEEeeCCc--eeEEEEccCCCcHHHHHHHHHHH
Q psy5297 25 IPNDVYFKSGEV--SFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 25 il~~isl~i~~g--~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
+++.+.-.+..| ..+.|.||+|+||||+++.+...
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 444444445555 44999999999999999999654
No 248
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.54 E-value=0.00027 Score=56.96 Aligned_cols=22 Identities=18% Similarity=-0.094 Sum_probs=19.4
Q ss_pred eeEEEEccCCCcHHHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
..+.|.||.|+|||+|.+.|+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5677889999999999999965
No 249
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.53 E-value=4.6e-05 Score=59.30 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=22.0
Q ss_pred CCceeEEEEccCCCcHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
.+|.+++|+|++||||||+.+.|.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 578899999999999999999993
No 250
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.53 E-value=0.00077 Score=66.85 Aligned_cols=136 Identities=13% Similarity=0.174 Sum_probs=75.7
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHHHHHHHH-hhCceecCCCCCcchhhHHHhhcCcc--cccccCcCccHHHHHHHHHH
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFTRVGAA--DSQYRGISTFMMEMKETATV 109 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-~~g~~v~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~g~~q~~~i 109 (185)
+++|+++.|.||.|+|||||...+..-.... ....|+..+... ... ..+.++.+ ...-..+. +.. +.+.+
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~-~~~--~a~~lGvd~~~L~I~~~~--~~e--~il~~ 452 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-DPI--YARKLGVDIDNLLCSQPD--TGE--QALEI 452 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC-CHH--HHHHTTCCTTTCEEECCS--SHH--HHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCH-HHH--HHHHcCCCHHHeEEeCCC--CHH--HHHHH
Confidence 6799999999999999999988773322111 111244443322 211 23445543 11111122 222 23444
Q ss_pred HHhC---CCCeEEEEeCCCCCCC-------cCC------hhHHHHHHHHHH---HhcCCCeEEEecCh-hH---------
Q psy5297 110 IKKC---TENSLVIIDELGRGTS-------TFD------GFGMACSIAREL---ASNRQPFTLFATHF-HE--------- 160 (185)
Q Consensus 110 a~~l---~~p~llllDEP~~g~~-------~~d------~~~~~~~il~~l---~~~~~~~vii~tH~-~~--------- 160 (185)
++.+ ..|+++++|....-.. +-| ...+.+. +..+ .++.+++||+++|- ..
T Consensus 453 ~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~-Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~ 531 (2050)
T 3cmu_A 453 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA-MRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPE 531 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHH-HHHHHHHHHTTTCEEEEEECCEECTTCCSSCCE
T ss_pred HHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHH-HHHHHHHHHHcCCeEEEEeecccccccccCCCc
Confidence 4432 6899999999854332 001 0112222 2333 45579999999984 22
Q ss_pred -------HHHhhccccceeeeeE
Q psy5297 161 -------IALLSRVIPTFRNVHE 176 (185)
Q Consensus 161 -------~~~~~d~~~~l~~g~i 176 (185)
+...+|.++.++....
T Consensus 532 ~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 532 TTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp ECSSHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCcchhhhhCCEEEEEEeccc
Confidence 5667888888876543
No 251
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.53 E-value=8.3e-06 Score=66.94 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=32.9
Q ss_pred ceeeeceEEEeeCCcee--EEEEccCCCcHHHHHHHHHHH
Q psy5297 22 VSYIPNDVYFKSGEVSF--NLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 22 ~~~il~~isl~i~~g~~--~~l~G~NGsGKSTLlk~iG~i 59 (185)
...+++.++..++.|++ +.+.||+|+||||+++++...
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34578888888999998 999999999999999999653
No 252
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.52 E-value=4.6e-05 Score=57.03 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=18.2
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
.+++++++..++. .++++|++|+|||||++.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l 43 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHML 43 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHH
Confidence 3778999987765 5789999999999999987
No 253
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.52 E-value=1.3e-05 Score=66.71 Aligned_cols=34 Identities=15% Similarity=0.060 Sum_probs=30.5
Q ss_pred eeeceEEEeeCCcee--EEEEccCCCcHHHHHHHHH
Q psy5297 24 YIPNDVYFKSGEVSF--NLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 24 ~il~~isl~i~~g~~--~~l~G~NGsGKSTLlk~iG 57 (185)
.+++.+++.+++|++ ++|+|++||||||+.++|.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHH
Confidence 467888888899988 9999999999999999994
No 254
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.51 E-value=2.3e-05 Score=68.09 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=29.2
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.++.++++.+++| ++|+||||+|||||+|+|+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHH
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHH
Confidence 3677888999988 99999999999999999954
No 255
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.50 E-value=0.00022 Score=58.05 Aligned_cols=26 Identities=15% Similarity=-0.003 Sum_probs=22.5
Q ss_pred ceeEEEEccCCCcHHHHHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGVSVF 61 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~i~~ 61 (185)
+.-+.|.||.|+|||+|+++|+.-..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999976443
No 256
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.50 E-value=5.5e-05 Score=58.81 Aligned_cols=19 Identities=32% Similarity=0.244 Sum_probs=17.9
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|++|+|||||++.|
T Consensus 31 ~i~lvG~~g~GKStlin~l 49 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSI 49 (239)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999988
No 257
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.49 E-value=0.0014 Score=52.29 Aligned_cols=26 Identities=19% Similarity=0.066 Sum_probs=22.0
Q ss_pred CceeEEEEccCCCcHHHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGVSV 60 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~i~ 60 (185)
.+.-+.|.||.|+||||+.+.++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999997643
No 258
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.48 E-value=0.00048 Score=59.51 Aligned_cols=26 Identities=19% Similarity=0.073 Sum_probs=23.6
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
.+.+|+++.|.|+.|+|||||+-.+.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a 263 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQA 263 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHH
Confidence 47899999999999999999987774
No 259
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.45 E-value=6.6e-05 Score=54.74 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=18.4
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
-.++|+|++|+|||||++.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l 23 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNAL 23 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 260
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.45 E-value=2.3e-05 Score=59.18 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=28.0
Q ss_pred eeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 24 YIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 24 ~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
.+++++++..++.+ ++++|++|+|||||++.+
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l 45 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHML 45 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHH
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHH
Confidence 47788888887765 689999999999999998
No 261
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.43 E-value=6.8e-05 Score=58.83 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=22.1
Q ss_pred eceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 26 PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 26 l~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+.++++..++| +.|.||+|+||||+++.|+.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHH
Confidence 45566666655 88999999999999999965
No 262
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.42 E-value=7.5e-05 Score=54.49 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.1
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+++|+|+.||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 263
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.41 E-value=9.6e-05 Score=55.03 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.1
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+++.++.|.|+.||||||+.+.+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999853
No 264
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.41 E-value=7e-05 Score=62.00 Aligned_cols=31 Identities=26% Similarity=0.192 Sum_probs=24.6
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
..++++++++++ .++|+|++|||||||++.|
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l 54 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESI 54 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHH
Confidence 358899999987 7999999999999999999
No 265
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.39 E-value=6.6e-05 Score=59.18 Aligned_cols=27 Identities=26% Similarity=0.153 Sum_probs=24.0
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
..+++.++.|+|++||||||+.+.|..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 567789999999999999999999854
No 266
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.37 E-value=5e-05 Score=64.08 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=29.9
Q ss_pred eEEEeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 28 ~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
|+.+.+.+|+.++|+||+|+|||||++.|...
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999998543
No 267
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.37 E-value=0.00011 Score=56.28 Aligned_cols=24 Identities=25% Similarity=0.098 Sum_probs=21.1
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
++-+++|+|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999954
No 268
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.37 E-value=9.6e-05 Score=53.68 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=18.1
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
+++|.||.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999988
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.36 E-value=9.7e-05 Score=54.43 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.6
Q ss_pred ceeEEEEccCCCcHHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+.++.|+|+.||||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999854
No 270
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.34 E-value=0.0001 Score=55.22 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=19.7
Q ss_pred eeEEEEccCCCcHHHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+++|+|++|||||||++.|-.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5799999999999999999843
No 271
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.33 E-value=0.00011 Score=54.53 Aligned_cols=23 Identities=22% Similarity=-0.000 Sum_probs=20.9
Q ss_pred ceeEEEEccCCCcHHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
|.+++|.|+.||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999855
No 272
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.33 E-value=0.00011 Score=54.26 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=18.4
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
-.++|+|++|+|||||++.+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l 27 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNAL 27 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 273
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.33 E-value=6.2e-05 Score=61.14 Aligned_cols=32 Identities=16% Similarity=0.043 Sum_probs=27.6
Q ss_pred ce-EEEeeCCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 27 ND-VYFKSGEVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 27 ~~-isl~i~~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
.+ ++++.+ +++++++|+||+||||++..++..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence 45 778876 999999999999999999999543
No 274
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.32 E-value=5e-05 Score=69.56 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=46.3
Q ss_pred EEeeCCceeEEEEccCCCcHHHHHHHHHHHHHHHhhCceecCCCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHH
Q psy5297 30 YFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATV 109 (185)
Q Consensus 30 sl~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~~~g~~v~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~i 109 (185)
++.+.+++.++|.||+|+|||||.|+|+... ... ++. +...+...+.+++.....++....
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~---~~~-~i~---------------v~~~~l~~~~~g~~~~~i~~~f~~ 565 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-FIS---------------IKGPELLTMWFGESEANVREIFDK 565 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH---TCC-CCC---------------CCCSSSTTCCTTTSSHHHHHHHHH
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHh---CCC-EEE---------------EechHhhhhhcCccHHHHHHHHHH
Confidence 5566788999999999999999999996543 111 111 111122223333433444444444
Q ss_pred HHhCCCCeEEEEeCC
Q psy5297 110 IKKCTENSLVIIDEL 124 (185)
Q Consensus 110 a~~l~~p~llllDEP 124 (185)
|+. ..|.++++||.
T Consensus 566 a~~-~~p~vl~iDEi 579 (806)
T 1ypw_A 566 ARQ-AAPCVLFFDEL 579 (806)
T ss_dssp HHH-HCSBCCCCSSH
T ss_pred HHh-cCCeEEEEECh
Confidence 443 56899999995
No 275
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.32 E-value=0.0014 Score=50.08 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=39.2
Q ss_pred CCCeEEEEeCCCC--CCCcCChhHHHHHHHHHHHhc-CCCeEEEecCh--hHHHHhhccccceeee
Q psy5297 114 TENSLVIIDELGR--GTSTFDGFGMACSIARELASN-RQPFTLFATHF--HEIALLSRVIPTFRNV 174 (185)
Q Consensus 114 ~~p~llllDEP~~--g~~~~d~~~~~~~il~~l~~~-~~~~vii~tH~--~~~~~~~d~~~~l~~g 174 (185)
.+.++|||||.+- ....++...+. +.+.++ .+..+|+++.+ .++.+.||.+.-|+.-
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~----~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVI----SALNARPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHH----HHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHH----HHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 5689999999943 23345544433 444432 36789999996 7788999998877653
No 276
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.31 E-value=0.00069 Score=56.00 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=20.9
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
...-+.|.||.|+||||+.+.+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999964
No 277
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.31 E-value=0.00012 Score=57.75 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.4
Q ss_pred eeEEEEccCCCcHHHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+++|+||+|||||||.+.|..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999999854
No 278
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.31 E-value=0.00053 Score=52.82 Aligned_cols=25 Identities=28% Similarity=0.220 Sum_probs=22.4
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHH
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
+++|+++.|.|+.|+|||||.-.+.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 6789999999999999999987663
No 279
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.29 E-value=0.00011 Score=54.48 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=22.0
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.++.+++|+|+.||||||+.+.+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4578899999999999999999853
No 280
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.27 E-value=0.00012 Score=62.47 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=26.5
Q ss_pred ceEEEeeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 27 ~~isl~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+++|+ ++++++++|+||+||||++..|+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567787 789999999999999999999943
No 281
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.26 E-value=0.00015 Score=58.43 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=22.5
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
...+.++.|.||+||||||+.+.+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999998843
No 282
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.25 E-value=0.00013 Score=53.76 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=18.5
Q ss_pred eEEEEccCCCcHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG 57 (185)
.++|+|++||||||+.+.|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999994
No 283
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.24 E-value=0.00014 Score=53.85 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=17.8
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|++|+|||||++.+
T Consensus 4 kv~ivG~~gvGKStLl~~l 22 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQL 22 (184)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 284
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0019 Score=55.04 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.3
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+-.=+.|.||.|+|||+|.|+++.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 334589999999999999999964
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.22 E-value=0.00019 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=19.7
Q ss_pred eeEEEEccCCCcHHHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+++|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999865
No 286
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.21 E-value=0.00018 Score=53.93 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=19.1
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+++|.|+.||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999854
No 287
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.20 E-value=0.0002 Score=53.76 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=22.2
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+|.+++|+|+.||||||+.+.|..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999999999854
No 288
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.20 E-value=0.00017 Score=54.64 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=17.4
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
-++|+||+|||||||++.|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999987
No 289
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.19 E-value=0.001 Score=51.61 Aligned_cols=122 Identities=18% Similarity=0.200 Sum_probs=62.1
Q ss_pred CCceeEEEEccCCCcHHH-HHHHHHHHHHHHhhCceecC--CCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKST-YIRSIGVSVFLAQIGCFVPC--DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI 110 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKST-Llk~iG~i~~~~~~g~~v~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia 110 (185)
..|.+..++||-|||||| |++.+-......+.. ++++ ...... ...+..+.|+.-.. ..+.... .|.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kv-li~kp~~D~R~~-~~~I~Sr~G~~~~a-~~v~~~~-------di~ 95 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKV-VVFKPAIDDRYH-KEKVVSHNGNAIEA-INISKAS-------EIM 95 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE-EEEEEC------------CBTTBCCEE-EEESSGG-------GGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCce-EEEEeccCCcch-hhhHHHhcCCceee-EEeCCHH-------HHH
Confidence 569999999999999999 777763322222112 3332 221111 22355555543211 1111110 011
Q ss_pred HhC-CCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-----------hHHHHhhcccccee
Q psy5297 111 KKC-TENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-----------HEIALLSRVIPTFR 172 (185)
Q Consensus 111 ~~l-~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-----------~~~~~~~d~~~~l~ 172 (185)
..+ .+.++++.||- -.++. .+.+. +..+.. .|..|++.-=+ ..+..+||++.-++
T Consensus 96 ~~i~~~~dvV~IDEa----QFf~~-~~v~~-l~~la~-~gi~Vi~~GLd~DF~~~~F~~~~~Ll~~Ad~v~kl~ 162 (219)
T 3e2i_A 96 THDLTNVDVIGIDEV----QFFDD-EIVSI-VEKLSA-DGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQ 162 (219)
T ss_dssp GSCCTTCSEEEECCG----GGSCT-HHHHH-HHHHHH-TTCEEEEEEESBCTTSCBCTTHHHHHHHCSEEEEEC
T ss_pred HHHhcCCCEEEEech----hcCCH-HHHHH-HHHHHH-CCCEEEEeecccccccCCCccHHHHHHhcceEEEee
Confidence 123 67899999997 22332 23443 366665 69988875322 14667788776543
No 290
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.19 E-value=0.00018 Score=56.41 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.8
Q ss_pred ceeEEEEccCCCcHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG 57 (185)
.-+++|.||+||||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999993
No 291
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.17 E-value=0.0001 Score=55.83 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=19.2
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+++|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999954
No 292
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.17 E-value=0.00024 Score=53.24 Aligned_cols=23 Identities=26% Similarity=0.094 Sum_probs=20.4
Q ss_pred ceeEEEEccCCCcHHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
..+++|+|+.||||||+.+.|..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999854
No 293
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.15 E-value=0.00025 Score=53.44 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=21.6
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+|.+++|.|+.||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999965
No 294
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.15 E-value=0.00024 Score=52.70 Aligned_cols=22 Identities=27% Similarity=0.138 Sum_probs=20.0
Q ss_pred ceeEEEEccCCCcHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG 57 (185)
+.+++|+|+.||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999884
No 295
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.15 E-value=0.00025 Score=52.87 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.7
Q ss_pred CCceeEEEEccCCCcHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
.++.+++|+|+.||||||+.+.|.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999994
No 296
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.13 E-value=0.00026 Score=53.56 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.7
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.++|.+++|+|+.||||||+.+.|..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999999964
No 297
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.12 E-value=0.0024 Score=50.00 Aligned_cols=120 Identities=14% Similarity=0.066 Sum_probs=61.0
Q ss_pred CCceeEEEEccCCCcHHHHHHHH-HHHHHHHhhCceecC--CCCCcchhhHHHhhcCcccccccCcCccHHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSI-GVSVFLAQIGCFVPC--DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVI 110 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~i-G~i~~~~~~g~~v~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~g~~q~~~ia 110 (185)
..|.+..++||=||||||-+--. -.....++.. ++++ ....+. ..+..+.|+.-... .+..... +.
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kv-li~kp~~D~Ryg--~~i~sr~G~~~~a~-~i~~~~d-------i~ 85 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKC-LVIKYAKDTRYS--SSFCTHDRNTMEAL-PACLLRD-------VA 85 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCE-EEEEETTCCCC-------------CEEE-EESSGGG-------GH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeE-EEEeecCCccch--HHHHhhcCCeeEEE-ecCCHHH-------HH
Confidence 46999999999999999864332 2211111112 3333 333333 45566666542111 1222211 11
Q ss_pred HhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-----------hHHHHhhcccccee
Q psy5297 111 KKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-----------HEIALLSRVIPTFR 172 (185)
Q Consensus 111 ~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-----------~~~~~~~d~~~~l~ 172 (185)
..+.+.+++++||- --..+ +.+ +++.+.. .|..||++-++ ..+..+||.+.-|+
T Consensus 86 ~~~~~~dvViIDEa---QF~~~---v~e-l~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 86 QEALGVAVIGIDEG---QFFPD---IVE-FCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HHHTTCSEEEESSG---GGCTT---HHH-HHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred HHhccCCEEEEEch---hhhhh---HHH-HHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 11267899999998 33322 434 3466665 69999999887 34666788776543
No 298
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.11 E-value=0.0012 Score=51.44 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.0
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
....-+.|.||.|+||||+.+.++.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445588999999999999999965
No 299
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.11 E-value=0.0028 Score=63.01 Aligned_cols=120 Identities=11% Similarity=0.087 Sum_probs=64.7
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHHHHHHH-hhCceecCCCCCcchhhHHHhhcCccc--ccccCcCccHHHHHHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLA-QIGCFVPCDSATISVVDQIFTRVGAAD--SQYRGISTFMMEMKETAT 108 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~i~~~~-~~g~~v~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~lS~g~~q~~~ 108 (185)
-+++|+++.|.|++|+|||||+..+..-.-.. ....|+..+...-... ..+++++. ..-. +..+..+. ..
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~---A~rlG~~~~~l~i~--~~~~i~~i--~~ 800 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCS--QPDTGEQA--LE 800 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTTTCEEE--CCSSHHHH--HH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHH---HHHcCCCccceEEe--cCCCHHHH--HH
Confidence 46789999999999999999998885422211 1122444433221121 34455431 1111 22232222 22
Q ss_pred HHHhC---CCCeEEEEeCCCCCCC---------cCC----hhHHHHHH--HHHHHhcCCCeEEEecCh
Q psy5297 109 VIKKC---TENSLVIIDELGRGTS---------TFD----GFGMACSI--ARELASNRQPFTLFATHF 158 (185)
Q Consensus 109 ia~~l---~~p~llllDEP~~g~~---------~~d----~~~~~~~i--l~~l~~~~~~~vii~tH~ 158 (185)
.++.+ ..|+++++|+...=.. ... ...+.+.+ +..++++.+++||+++|-
T Consensus 801 ~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 801 ICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred HHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 22332 5799999999532111 001 01122221 466666689999999994
No 300
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.11 E-value=0.00027 Score=53.40 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.4
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+|.+++|+|+.||||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999999999954
No 301
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.10 E-value=0.00012 Score=60.81 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=24.4
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
+.+.++++|++ +|+|++|+|||||++.|
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L 57 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSL 57 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHH
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHH
Confidence 45778888875 99999999999999997
No 302
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.08 E-value=0.00018 Score=53.16 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=16.7
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
++.+++|+|+.||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999853
No 303
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.06 E-value=0.00031 Score=52.05 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=20.4
Q ss_pred ceeEEEEccCCCcHHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+..++|+|+.||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999943
No 304
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.03 E-value=0.0019 Score=55.97 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.6
Q ss_pred ceeEEEEccCCCcHHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
...+.|.||.|+||||+.+.++.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999965
No 305
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0036 Score=53.44 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=20.9
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+-.=+.|.||.|+|||+|.|+|+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3445688999999999999999954
No 306
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.02 E-value=0.0012 Score=53.80 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=21.3
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+..-+.|.||.|+|||+|.+.++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHH
Confidence 3446789999999999999999965
No 307
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.01 E-value=0.00036 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.7
Q ss_pred eEEEEccCCCcHHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~i 59 (185)
+++|.|+.||||||+.+.|..-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
No 308
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.01 E-value=0.00037 Score=51.61 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=19.3
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+++|.|+.||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999965
No 309
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.99 E-value=0.00038 Score=52.34 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=19.2
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+++|+|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999943
No 310
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.99 E-value=0.0016 Score=59.92 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.7
Q ss_pred eeEEEEccCCCcHHHHHHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSIGVSVF 61 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~iG~i~~ 61 (185)
..+.|.||+|+|||++.+.|.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999977554
No 311
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.98 E-value=0.00032 Score=56.57 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=23.9
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+.++..+.|.||+|+|||||.+.+..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHH
Confidence 456788999999999999999999965
No 312
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.98 E-value=0.00045 Score=57.64 Aligned_cols=22 Identities=18% Similarity=0.016 Sum_probs=20.3
Q ss_pred CceeEEEEccCCCcHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~i 56 (185)
.+..++|+||+||||||+++.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~ 55 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKML 55 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHH
Confidence 5678999999999999999999
No 313
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.96 E-value=0.00037 Score=58.80 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=22.6
Q ss_pred eeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 32 KSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 32 ~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
.+..+..++|+|+||+|||||++.|
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~L 42 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVL 42 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHH
Confidence 4467788999999999999999999
No 314
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.96 E-value=0.0011 Score=57.40 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=21.0
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
....-+.|.||.|+|||++.+.|+.
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHH
Confidence 3445689999999999999999954
No 315
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.95 E-value=0.00041 Score=57.84 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=18.1
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
+++|+|++|||||||++.+
T Consensus 181 ~V~lvG~~naGKSTLln~L 199 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSL 199 (364)
T ss_dssp EEEEECBTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999999
No 316
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.93 E-value=0.00053 Score=50.71 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=19.9
Q ss_pred ceeEEEEccCCCcHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG 57 (185)
..+++|+|+.||||||+.+.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999984
No 317
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.92 E-value=0.00049 Score=51.35 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.3
Q ss_pred eeEEEEccCCCcHHHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+++|+|++|||||||++.|-.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988843
No 318
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.89 E-value=0.0012 Score=53.57 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=20.7
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+..-+.|.||.|+|||+|.+.++.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345689999999999999999965
No 319
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.87 E-value=0.0006 Score=53.84 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.6
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
++.+++|.|+.||||||+.+.|..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999965
No 320
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.87 E-value=0.00056 Score=51.02 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.3
Q ss_pred CCceeEEEEccCCCcHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
+.+.+++|+|+.||||||+.+.|.
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999994
No 321
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.87 E-value=0.00058 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.7
Q ss_pred CceeEEEEccCCCcHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
++-+++|+|+.||||||+.+.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999994
No 322
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.86 E-value=0.00051 Score=58.38 Aligned_cols=20 Identities=30% Similarity=0.248 Sum_probs=18.7
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
-.++|+|+||+|||||++.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l 200 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAI 200 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 37999999999999999998
No 323
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.86 E-value=0.00054 Score=54.31 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=18.0
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|++|+|||||++.+
T Consensus 5 ~i~lvG~~g~GKTTL~n~l 23 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNAL 23 (271)
T ss_dssp EEEEEECSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 324
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.85 E-value=0.00057 Score=52.56 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.2
Q ss_pred CCceeEEEEccCCCcHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
.++.+++|.|+.||||||+.+.|.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999993
No 325
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.84 E-value=0.00072 Score=50.83 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=20.8
Q ss_pred CCceeEEEEccCCCcHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
.+..+++|+|+.||||||+.+.|.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999883
No 326
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.84 E-value=0.00062 Score=50.44 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=19.2
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+++|+|+.||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 327
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.83 E-value=0.003 Score=53.81 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.7
Q ss_pred eeEEEEccCCCcHHHHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
.+++++|++|+||||+...|+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 69999999999999999999653
No 328
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.83 E-value=0.00058 Score=49.86 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=19.5
Q ss_pred eeEEEEccCCCcHHHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+++|+|+.||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999854
No 329
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.83 E-value=0.00063 Score=51.67 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=18.0
Q ss_pred eEEEEccCCCcHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG 57 (185)
.++|+||.||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999993
No 330
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.81 E-value=0.00063 Score=52.08 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.3
Q ss_pred CceeEEEEccCCCcHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
.+.+++|+||.||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999993
No 331
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.81 E-value=0.0022 Score=53.41 Aligned_cols=24 Identities=21% Similarity=0.312 Sum_probs=20.8
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+..-+.|.||.|+|||+|.+.|+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999954
No 332
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.79 E-value=0.00074 Score=49.10 Aligned_cols=21 Identities=24% Similarity=0.052 Sum_probs=18.9
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+++|+|+.||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 333
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.79 E-value=0.0008 Score=50.63 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=21.3
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
..+-+++|+|+.||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999943
No 334
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.77 E-value=0.0029 Score=52.34 Aligned_cols=24 Identities=17% Similarity=-0.068 Sum_probs=20.4
Q ss_pred CceeEEE--EccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLV--TGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l--~G~NGsGKSTLlk~iG~ 58 (185)
.+..+.| .||.|+|||||++.+..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHH
Confidence 4567777 89999999999999854
No 335
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.75 E-value=0.00073 Score=49.88 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=18.3
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
-.++++|++|+|||||++.+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l 36 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQL 36 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999988
No 336
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.75 E-value=0.0016 Score=53.75 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=20.5
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+..-+.|.||.|+|||||.+.+..
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHH
Confidence 345588999999999999999965
No 337
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.74 E-value=0.0008 Score=51.16 Aligned_cols=19 Identities=26% Similarity=0.142 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+||.||||||+.+.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 338
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.74 E-value=0.00058 Score=49.93 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.1
Q ss_pred CceeEEEEccCCCcHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~i 56 (185)
+.-.++++|++|+|||||++.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l 38 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRL 38 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHH
Confidence 3456899999999999999887
No 339
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.72 E-value=0.00074 Score=49.96 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=19.0
Q ss_pred eeEEEEccCCCcHHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~iG 57 (185)
.+++|+|+.||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999984
No 340
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.00088 Score=49.54 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=18.5
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
-.++++|+.|+|||||++.+
T Consensus 49 ~~i~vvG~~g~GKSsll~~l 68 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLL 68 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999998
No 341
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.71 E-value=0.0015 Score=50.21 Aligned_cols=41 Identities=20% Similarity=-0.008 Sum_probs=28.1
Q ss_pred eeeecCCceeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 15 IVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 15 ~l~~~~~~~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
||+........+...-+.+. |..++|+||.|+|||||...+
T Consensus 14 ~l~~~~a~~~~lHa~~v~~~-g~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 14 YLDSQLAERRSMHGVLVDIY-GLGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp -------CCCCEESEEEEET-TEEEEEECCCTTTTHHHHHHH
T ss_pred HHHHhcCcceeeeEEEEEEC-CEEEEEECCCCCCHHHHHHHH
Confidence 44433333446777777774 789999999999999998877
No 342
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.69 E-value=0.00091 Score=51.49 Aligned_cols=21 Identities=33% Similarity=0.283 Sum_probs=18.8
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+++|.|+.||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999854
No 343
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.69 E-value=0.00095 Score=48.68 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=19.9
Q ss_pred ceeEEEEccCCCcHHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
=++++|+|+-||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999854
No 344
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.68 E-value=0.00092 Score=47.90 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l 25 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRY 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4789999999999999987
No 345
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.68 E-value=0.00045 Score=55.72 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=18.3
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+.-+++|.||.||||||+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999965
No 346
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0051 Score=51.94 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.2
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+-.=+.|.||.|+|||+|.|+++.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHH
Confidence 334588999999999999999954
No 347
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.66 E-value=0.00097 Score=47.43 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssl~~~l 23 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQL 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999999988
No 348
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.64 E-value=0.0024 Score=48.67 Aligned_cols=117 Identities=12% Similarity=0.061 Sum_probs=66.2
Q ss_pred CceeEEEEccCCCcHH-HHHHHHHHHHHHHhhCcee-cCCCCCcchhhHHHhhcCccc--ccccCcCccHHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKS-TYIRSIGVSVFLAQIGCFV-PCDSATISVVDQIFTRVGAAD--SQYRGISTFMMEMKETATVI 110 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKS-TLlk~iG~i~~~~~~g~~v-~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~lS~g~~q~~~ia 110 (185)
.|+++.+.||-||||| -||+.++......+...|+ |.-...+. +.+..+.|..- .......++-.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~--~~i~S~~g~~~~A~~~~~~~d~~~--------- 87 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDRNTMEALPACLLRDVAQ--------- 87 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG--GSCCHHHHHHSEEEEESSGGGGHH---------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch--hhhhhccCCcccceecCCHHHHHH---------
Confidence 5899999999999999 7888887765543333233 33222222 22333333211 11112222211
Q ss_pred HhCCCCeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecCh-h----------HHHHhhccccce
Q psy5297 111 KKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHF-H----------EIALLSRVIPTF 171 (185)
Q Consensus 111 ~~l~~p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~-~----------~~~~~~d~~~~l 171 (185)
...+.++|++||- =-. ..+.+. ++.+.+ .|+.||++-.+ . .+..+||++.-+
T Consensus 88 -~~~~~DvIlIDEa---QFf---k~~ve~-~~~L~~-~gk~VI~~GL~~DF~~~~F~~~~~Ll~~Ad~v~kl 150 (195)
T 1w4r_A 88 -EALGVAVIGIDEG---QFF---PDIVEF-CEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKL 150 (195)
T ss_dssp -HHHTCSEEEESSG---GGC---TTHHHH-HHHHHH-TTCEEEEEEESBCTTSSBCTTGGGGGGGCSEEEEC
T ss_pred -hccCCCEEEEEch---hhh---HHHHHH-HHHHHH-CCCeEEEEecccccccccchhHHHHHHhcCeEEEe
Confidence 0235799999998 322 224443 477775 79999998775 2 344566666543
No 349
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.63 E-value=0.001 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=20.2
Q ss_pred ceeEEEEccCCCcHHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
--+++|+|+.||||||+.+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
No 350
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.63 E-value=0.0013 Score=49.90 Aligned_cols=24 Identities=29% Similarity=0.069 Sum_probs=21.1
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
..-+++|+|+.||||||+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999854
No 351
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.63 E-value=0.0011 Score=47.31 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=17.6
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 3 ki~v~G~~~~GKSsli~~l 21 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRL 21 (161)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999988
No 352
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.62 E-value=0.0012 Score=50.83 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=22.0
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+|.++++.|+.||||||+.+.|..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999999954
No 353
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.62 E-value=0.013 Score=53.73 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=20.9
Q ss_pred ceeEEEEccCCCcHHHHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGVSV 60 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~i~ 60 (185)
..-++|+||+|+||||+++.+..-.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999997643
No 354
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.62 E-value=0.0011 Score=47.62 Aligned_cols=18 Identities=33% Similarity=0.320 Sum_probs=17.2
Q ss_pred EEEEccCCCcHHHHHHHH
Q psy5297 39 NLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 39 ~~l~G~NGsGKSTLlk~i 56 (185)
++++|+.|+|||||++.+
T Consensus 5 i~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIF 22 (166)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 789999999999999988
No 355
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.62 E-value=0.0011 Score=47.30 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=17.4
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l 23 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQF 23 (167)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999887
No 356
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.60 E-value=0.00094 Score=52.09 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=19.9
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+|.++++.|+.||||||+.+.|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999999954
No 357
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.59 E-value=0.0014 Score=51.27 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=21.3
Q ss_pred CCceeEEEEccCCCcHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
.++-+++|+||.||||||+.+.|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999994
No 358
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.59 E-value=0.0011 Score=53.04 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=20.0
Q ss_pred ceeEEEEccCCCcHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG 57 (185)
..+++|+|+.||||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999985
No 359
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.59 E-value=0.0011 Score=47.21 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l 24 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQF 24 (168)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999987
No 360
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.59 E-value=0.0011 Score=47.49 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 8 ~i~v~G~~~~GKSsli~~l 26 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRF 26 (170)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 3789999999999999987
No 361
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.59 E-value=0.0011 Score=47.38 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=17.4
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRF 23 (170)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999999987
No 362
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.58 E-value=0.0012 Score=47.42 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=17.4
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRF 23 (172)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999887
No 363
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.57 E-value=0.0012 Score=47.46 Aligned_cols=19 Identities=16% Similarity=0.210 Sum_probs=17.4
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l 26 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRY 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4789999999999999887
No 364
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.57 E-value=0.0012 Score=47.22 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=17.4
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 5 ki~v~G~~~~GKssli~~l 23 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQF 23 (167)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999999988
No 365
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.57 E-value=0.0012 Score=47.88 Aligned_cols=19 Identities=26% Similarity=0.266 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l 29 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRF 29 (181)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 366
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.57 E-value=0.0014 Score=47.49 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.4
Q ss_pred CceeEEEEccCCCcHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~i 56 (185)
+.-.++++|+.|+|||||++.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l 28 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAI 28 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3456899999999999999987
No 367
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.56 E-value=0.0012 Score=47.88 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 10 ~i~v~G~~~~GKSsli~~l 28 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRY 28 (182)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999887
No 368
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.56 E-value=0.0012 Score=48.79 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=18.4
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
-.++|+|+.|+|||||++.+
T Consensus 24 ~~i~v~G~~~~GKSsli~~l 43 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSL 43 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999998
No 369
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.56 E-value=0.0012 Score=47.31 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRF 23 (170)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 3789999999999999988
No 370
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.56 E-value=0.0012 Score=47.41 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=17.2
Q ss_pred EEEEccCCCcHHHHHHHH
Q psy5297 39 NLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 39 ~~l~G~NGsGKSTLlk~i 56 (185)
++++|+.|+|||||++.+
T Consensus 5 i~ivG~~~~GKSsli~~l 22 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTF 22 (169)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 789999999999999988
No 371
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.55 E-value=0.0012 Score=47.78 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=17.6
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l 27 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRY 27 (177)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3799999999999999988
No 372
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.54 E-value=0.0013 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=19.5
Q ss_pred eeEEEEccCCCcHHHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.++.|.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999843
No 373
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.54 E-value=0.0013 Score=47.53 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=17.6
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 6 ki~i~G~~~vGKSsl~~~l 24 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLF 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHH
Confidence 4899999999999999988
No 374
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.0056 Score=52.20 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=21.3
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+++-.=+.|.||.|+|||+|.++++.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 34445689999999999999999954
No 375
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.52 E-value=0.0014 Score=51.34 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=22.0
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+|.++++.|+.||||||+.+.|..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999999954
No 376
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.51 E-value=0.0029 Score=51.11 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=21.4
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
..+.-+.|.||.|+|||++.+.|..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHHH
Confidence 3456788999999999999999965
No 377
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.51 E-value=0.0015 Score=48.05 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 25 ~i~v~G~~~~GKSsli~~l 43 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNAL 43 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999987
No 378
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.51 E-value=0.0014 Score=47.14 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=18.2
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
-.++++|+.|+|||||++.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l 27 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRL 27 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999988
No 379
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.50 E-value=0.0014 Score=48.10 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=16.9
Q ss_pred EEEEccCCCcHHHHHHHH
Q psy5297 39 NLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 39 ~~l~G~NGsGKSTLlk~i 56 (185)
++++|+.|+|||||++.+
T Consensus 4 i~v~G~~~~GKSsli~~l 21 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRL 21 (190)
T ss_dssp EEEEEBTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 789999999999999887
No 380
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.50 E-value=0.0015 Score=50.32 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.9
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+|.++++-|+.||||||..+.|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999999954
No 381
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.49 E-value=0.0014 Score=52.30 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=18.0
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|++|+|||||++.+
T Consensus 5 kI~lvG~~nvGKSTL~n~L 23 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLI 23 (272)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 382
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.49 E-value=0.0015 Score=49.73 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=18.5
Q ss_pred eEEEEccCCCcHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.++|+|+.||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999943
No 383
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.48 E-value=0.0014 Score=47.44 Aligned_cols=19 Identities=26% Similarity=0.148 Sum_probs=17.6
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 11 ~i~v~G~~~~GKssli~~l 29 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQF 29 (181)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999887
No 384
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.45 E-value=0.0016 Score=55.01 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=22.7
Q ss_pred EeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297 31 FKSGEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 31 l~i~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
+.-.+..+++|+|++||||||+.+.+.
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHT
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 344567899999999999999999874
No 385
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.45 E-value=0.0015 Score=47.70 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=17.6
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 6 ki~v~G~~~~GKSsli~~l 24 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQL 24 (189)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999988
No 386
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.45 E-value=0.0016 Score=46.64 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=17.4
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l 26 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRF 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999887
No 387
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.44 E-value=0.0016 Score=47.10 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=17.4
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 16 ~i~v~G~~~~GKssli~~l 34 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRF 34 (179)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999987
No 388
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.42 E-value=0.0016 Score=49.69 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=20.7
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
++-+++|+|+.||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999943
No 389
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.41 E-value=0.0017 Score=47.59 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=17.6
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 13 ki~v~G~~~~GKSsli~~l 31 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQY 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999987
No 390
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.41 E-value=0.0039 Score=46.81 Aligned_cols=33 Identities=18% Similarity=0.055 Sum_probs=26.8
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
+..++..-+.+. |.-+++.|++|+||||+...+
T Consensus 4 ~~~lHas~v~v~-G~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 4 KQTWHANFLVID-KMGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp CEEEESEEEEET-TEEEEEEESSSSSHHHHHHHH
T ss_pred cEEEEEEEEEEC-CEEEEEEcCCCCCHHHHHHHH
Confidence 445666677765 889999999999999997766
No 391
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.41 E-value=0.0017 Score=48.04 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l 45 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRF 45 (193)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4899999999999999987
No 392
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.40 E-value=0.0017 Score=47.25 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=17.6
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 20 ki~v~G~~~~GKSsli~~l 38 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQF 38 (187)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999887
No 393
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.40 E-value=0.0018 Score=46.30 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=17.1
Q ss_pred EEEEccCCCcHHHHHHHH
Q psy5297 39 NLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 39 ~~l~G~NGsGKSTLlk~i 56 (185)
++++|+.|+|||||++.+
T Consensus 3 i~~~G~~~~GKssl~~~l 20 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKL 20 (164)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 789999999999999988
No 394
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.39 E-value=0.0021 Score=49.74 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=23.0
Q ss_pred EeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 31 FKSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 31 l~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
-...+..++.|+||.||||+|..+.|
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHH
Confidence 34567789999999999999999999
No 395
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.39 E-value=0.0018 Score=47.99 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=17.0
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~ 40 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRY 40 (184)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999765
No 396
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.38 E-value=0.0018 Score=46.80 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 17 ~i~v~G~~~~GKSsli~~l 35 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQF 35 (179)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999987
No 397
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.38 E-value=0.0018 Score=47.37 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 12 ki~v~G~~~~GKSsli~~l 30 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQF 30 (186)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999987
No 398
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.38 E-value=0.0021 Score=49.85 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.3
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+|.+++|.|+-||||||+.+.|..
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999999999954
No 399
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.36 E-value=0.0019 Score=47.60 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 23 ki~vvG~~~~GKSsli~~l 41 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQL 41 (190)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5889999999999999988
No 400
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.36 E-value=0.0019 Score=46.82 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 8 ki~v~G~~~~GKssl~~~l 26 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCF 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4789999999999999998
No 401
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.36 E-value=0.0023 Score=49.72 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=23.3
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~i 59 (185)
.+|.++++.|+.||||||+.+.+...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999999653
No 402
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.35 E-value=0.0019 Score=47.48 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG 57 (185)
.++|+|+.|+|||||++.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999998773
No 403
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.35 E-value=0.0019 Score=47.15 Aligned_cols=20 Identities=25% Similarity=0.069 Sum_probs=17.9
Q ss_pred eEEEEccCCCcHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG 57 (185)
.++|+|+.|+|||||++.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999873
No 404
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.35 E-value=0.0022 Score=49.63 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.5
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+|.++++-|+.||||||+.+.|..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999944
No 405
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.35 E-value=0.0041 Score=50.85 Aligned_cols=33 Identities=21% Similarity=0.041 Sum_probs=28.6
Q ss_pred eeeeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 23 SYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 23 ~~il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
...++...+.+ .|.-++++|++|+||||+...+
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l 164 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALEL 164 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHH
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHH
Confidence 45778888888 5899999999999999998777
No 406
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.34 E-value=0.0019 Score=47.50 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 9 ki~v~G~~~~GKSsli~~l 27 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRL 27 (208)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999988
No 407
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.34 E-value=0.0019 Score=47.46 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=17.4
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 9 ki~v~G~~~vGKSsli~~l 27 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVF 27 (184)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999987
No 408
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.32 E-value=0.002 Score=46.76 Aligned_cols=19 Identities=21% Similarity=0.210 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 14 ki~v~G~~~~GKSsli~~l 32 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRF 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4899999999999999887
No 409
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.0021 Score=46.70 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 12 ~i~v~G~~~~GKssli~~l 30 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRF 30 (180)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4899999999999999987
No 410
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.31 E-value=0.0021 Score=46.87 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=17.6
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 8 ki~~~G~~~~GKSsli~~l 26 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQF 26 (181)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5889999999999999987
No 411
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.30 E-value=0.0021 Score=48.57 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 14 ~i~~~G~~g~GKTsl~~~l 32 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLL 32 (218)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999987
No 412
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.30 E-value=0.0021 Score=47.80 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 16 ki~v~G~~~~GKSsli~~l 34 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQF 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999987
No 413
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.29 E-value=0.0017 Score=48.57 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=17.6
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 25 ki~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp EEEEECSTTSSHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999987
No 414
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.012 Score=50.13 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=20.8
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+.-.=+.|.||.|+|||+|.++++.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHH
Confidence 3335589999999999999999954
No 415
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.27 E-value=0.0022 Score=47.25 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 18 ki~v~G~~~~GKSsli~~l 36 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRF 36 (196)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4899999999999999988
No 416
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.27 E-value=0.013 Score=53.04 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.2
Q ss_pred eEEEEccCCCcHHHHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGVSVF 61 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~i~~ 61 (185)
.+.+.||.|+|||++.+.|+....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999987653
No 417
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.27 E-value=0.0021 Score=50.26 Aligned_cols=20 Identities=30% Similarity=0.237 Sum_probs=18.2
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
=.++|+|+.|+|||||++.|
T Consensus 22 l~I~lvG~~g~GKSSlin~l 41 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSI 41 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 35899999999999999988
No 418
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.27 E-value=0.0023 Score=46.63 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=17.4
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l 25 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISY 25 (186)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999887
No 419
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.26 E-value=0.0022 Score=47.74 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 10 ki~v~G~~~~GKSsli~~l 28 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQY 28 (207)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5899999999999999988
No 420
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.26 E-value=0.0023 Score=47.35 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 10 ki~vvG~~~~GKSsli~~l 28 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRF 28 (199)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5899999999999999988
No 421
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.26 E-value=0.0026 Score=49.07 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.0
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+.+++|+|+.||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999943
No 422
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.25 E-value=0.0029 Score=53.88 Aligned_cols=24 Identities=25% Similarity=0.247 Sum_probs=20.9
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+..-+.|.||.|+|||+|.+.++.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346689999999999999999965
No 423
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.25 E-value=0.0024 Score=46.87 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.1
Q ss_pred CceeEEEEccCCCcHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~i 56 (185)
+.-.++++|+.|+|||||++.+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l 38 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKF 38 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHH
Confidence 3446899999999999999987
No 424
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.24 E-value=0.0022 Score=48.65 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.6
Q ss_pred ceeEEEEccCCCcHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG 57 (185)
+-+++|+|+.||||||+.+.|.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999983
No 425
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.01 Score=51.03 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=21.4
Q ss_pred eCCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 33 SGEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 33 i~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+++-.=+.|.||.|+|||+|.|+|+.
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 34445688999999999999999954
No 426
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.24 E-value=0.0024 Score=51.67 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=18.5
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
.+++|+|+.|+|||||++.+
T Consensus 8 g~V~ivG~~nvGKSTLln~l 27 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNL 27 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46999999999999999998
No 427
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.23 E-value=0.0024 Score=47.36 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=17.6
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 25 ki~vvG~~~~GKSsli~~l 43 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRF 43 (192)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4899999999999999988
No 428
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.23 E-value=0.0022 Score=50.80 Aligned_cols=18 Identities=44% Similarity=0.484 Sum_probs=17.2
Q ss_pred EEEEccCCCcHHHHHHHH
Q psy5297 39 NLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 39 ~~l~G~NGsGKSTLlk~i 56 (185)
++|+|+.|+|||||++.|
T Consensus 11 I~vvG~~g~GKSTLin~L 28 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSL 28 (274)
T ss_dssp EEEEECTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 889999999999999987
No 429
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.23 E-value=0.0026 Score=48.19 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=19.3
Q ss_pred ceeEEEEccCCCcHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG 57 (185)
-..++++|+.|+|||||++.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~ 51 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTI 51 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 3579999999999999998883
No 430
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.21 E-value=0.0025 Score=46.96 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=17.6
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 24 ki~vvG~~~~GKSsli~~l 42 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRY 42 (189)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999987
No 431
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.20 E-value=0.0025 Score=48.06 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l 46 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRF 46 (201)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4899999999999999987
No 432
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.20 E-value=0.0026 Score=52.61 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.7
Q ss_pred eeEEEEccCCCcHHHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+++|.||+|||||||.+.|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4899999999999999988854
No 433
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.20 E-value=0.013 Score=53.61 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=20.2
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
+-.-+.|.||.|+|||+|.|.++.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 335588999999999999999853
No 434
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.19 E-value=0.0023 Score=53.41 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=17.8
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|++|+|||||++.+
T Consensus 3 ~v~IVG~pnvGKSTL~n~L 21 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNAL 21 (368)
T ss_dssp SEEEECCSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999999999
No 435
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.19 E-value=0.0026 Score=47.63 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l 45 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQF 45 (200)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4899999999999999998
No 436
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.19 E-value=0.0026 Score=47.19 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l 46 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERF 46 (192)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3889999999999999998
No 437
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.18 E-value=0.0026 Score=47.50 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=18.7
Q ss_pred ceeEEEEccCCCcHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~i 56 (185)
.-.++|+|+.|+|||||++.+
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l 44 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQF 44 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEEECCCCcCHHHHHHHH
Confidence 345899999999999999988
No 438
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.18 E-value=0.019 Score=51.83 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.4
Q ss_pred eEEEEccCCCcHHHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGVSV 60 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~i~ 60 (185)
.+.+.||.|+|||++.+.++...
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 58899999999999999997643
No 439
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.16 E-value=0.0028 Score=46.89 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 23 ki~v~G~~~~GKSsli~~l 41 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQF 41 (191)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 3889999999999999988
No 440
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.0028 Score=46.89 Aligned_cols=18 Identities=22% Similarity=0.408 Sum_probs=17.2
Q ss_pred EEEEccCCCcHHHHHHHH
Q psy5297 39 NLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 39 ~~l~G~NGsGKSTLlk~i 56 (185)
++|+|+.|+|||||++.+
T Consensus 26 i~v~G~~~~GKSsli~~l 43 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRY 43 (191)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHH
Confidence 899999999999999987
No 441
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.15 E-value=0.0028 Score=46.63 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=18.7
Q ss_pred ceeEEEEccCCCcHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~i 56 (185)
.-.++++|+.|+|||||++.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l 36 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQF 36 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHH
Confidence 346899999999999999987
No 442
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.15 E-value=0.0023 Score=48.14 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=22.0
Q ss_pred eeceEEEeeCCceeEEEEccCCCcHHHHHHHH
Q psy5297 25 IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 25 il~~isl~i~~g~~~~l~G~NGsGKSTLlk~i 56 (185)
...++.|.-..--.++++|+.|+|||||++.+
T Consensus 14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l 45 (207)
T 2fv8_A 14 GTENLYFQSMIRKKLVVVGDGACGKTCLLIVF 45 (207)
T ss_dssp -----CGGGSEEEEEEEEECTTSSHHHHHHHH
T ss_pred cccccccccccCcEEEEECcCCCCHHHHHHHH
Confidence 45555555444456899999999999999988
No 443
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.15 E-value=0.0032 Score=51.57 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.8
Q ss_pred ceeEEEEccCCCcHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG 57 (185)
+.+++|.||+|||||||.+.|.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHH
Confidence 5689999999999999998884
No 444
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.14 E-value=0.0029 Score=46.66 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 22 ki~v~G~~~~GKSsli~~l 40 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRF 40 (189)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999987
No 445
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.14 E-value=0.0074 Score=52.57 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=61.0
Q ss_pred ceeEEEEccCCCcHHHHHHHHHH---HHHHHhh--CceecCCCC----CcchhhHHHhhcCcccccccCcCccHHH-HHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGV---SVFLAQI--GCFVPCDSA----TISVVDQIFTRVGAADSQYRGISTFMME-MKE 105 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~---i~~~~~~--g~~v~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~lS~g-~~q 105 (185)
..+++|+|+-|.|||||.+.+.. -.+..+. ..++.-... .......++..++..... ..+.....+ ..+
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~ 230 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDL-LNFPSVEHVTSVV 230 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCC-TTCCCCTTCCHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCccc-ccccccccccHHH
Confidence 47999999999999999887653 1111111 123322221 122455666666543210 111122111 222
Q ss_pred HH-HHHHhC-CC-CeEEEEeCCCCCCCcCChhHHHHHHHHHHHhcCCCeEEEecChhHHHHh
Q psy5297 106 TA-TVIKKC-TE-NSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALL 164 (185)
Q Consensus 106 ~~-~ia~~l-~~-p~llllDEP~~g~~~~d~~~~~~~il~~l~~~~~~~vii~tH~~~~~~~ 164 (185)
.. .+...+ .+ +-+|+||-. .+.... .+ .. . .|..||+||-+..+...
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv------~~~~~~--~~-~~--~-~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDV------VQEETI--RW-AQ--E-LRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEE------CCHHHH--HH-HH--H-TTCEEEEEESBGGGGGG
T ss_pred HHHHHHHHHcCCCcEEEEEECC------CCchhh--cc-cc--c-CCCEEEEEcCCHHHHHH
Confidence 22 344455 54 889999987 222222 11 11 1 58899999988555543
No 446
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.13 E-value=0.0029 Score=51.19 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.1
Q ss_pred ceeEEEEccCCCcHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~i 56 (185)
-.+++|+|+.|+|||||++.+
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l 30 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNL 30 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHH
Confidence 357999999999999999988
No 447
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.12 E-value=0.0028 Score=46.43 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 23 ~i~v~G~~~~GKSsli~~l 41 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQF 41 (181)
T ss_dssp EEEEEEETTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999988
No 448
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.003 Score=46.42 Aligned_cols=19 Identities=26% Similarity=0.273 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 17 ~i~v~G~~~~GKssli~~l 35 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRF 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999988
No 449
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.11 E-value=0.0024 Score=47.10 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=18.1
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
=.++++|+.|+|||||++.+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l 41 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKL 41 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999988
No 450
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.10 E-value=0.003 Score=47.07 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~ 26 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIF 26 (192)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999887
No 451
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.10 E-value=0.003 Score=47.20 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=17.6
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 10 ki~v~G~~~~GKSsli~~l 28 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRF 28 (206)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999988
No 452
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.10 E-value=0.0031 Score=46.70 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 25 ki~~vG~~~~GKSsl~~~l 43 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAF 43 (194)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5899999999999999987
No 453
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.10 E-value=0.0031 Score=46.99 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 10 ki~v~G~~~~GKSsli~~l 28 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRY 28 (203)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999999887
No 454
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.10 E-value=0.003 Score=52.61 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=18.6
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
-.++|+|.+|+|||||++.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~L 22 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNAL 22 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999999
No 455
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.09 E-value=0.0031 Score=46.53 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=17.6
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 24 ki~v~G~~~~GKSsli~~l 42 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVI 42 (188)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999987
No 456
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.09 E-value=0.0037 Score=45.42 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=17.6
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 10 ki~v~G~~~~GKssl~~~~ 28 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISY 28 (182)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999887
No 457
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.09 E-value=0.0036 Score=47.82 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.7
Q ss_pred ceeEEEEccCCCcHHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
|.++++=|+-||||||+.+.|..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 57899999999999999999954
No 458
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.07 E-value=0.0033 Score=49.12 Aligned_cols=20 Identities=30% Similarity=0.182 Sum_probs=18.2
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
-.++|+|+.|+|||||++.+
T Consensus 23 ~~I~lvG~~g~GKStl~n~l 42 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSI 42 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45899999999999999887
No 459
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.07 E-value=0.0032 Score=46.72 Aligned_cols=20 Identities=20% Similarity=0.094 Sum_probs=18.0
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
=.++|+|+.|+|||||++.+
T Consensus 29 ~ki~v~G~~~vGKSsli~~l 48 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRF 48 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999887
No 460
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.06 E-value=0.0021 Score=50.61 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.3
Q ss_pred CCceeEEEEccCCCcHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
.++.+++|.|+-||||||+.+.|.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 567899999999999999999984
No 461
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.06 E-value=0.0033 Score=46.43 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=18.9
Q ss_pred ceeEEEEccCCCcHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~i 56 (185)
.-.++|+|+.|+|||||++.+
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l 37 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQV 37 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 346899999999999999998
No 462
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.05 E-value=0.0033 Score=46.75 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.7
Q ss_pred ceeEEEEccCCCcHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~i 56 (185)
.-.++++|+.|+|||||++.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l 49 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHH
Confidence 346899999999999999987
No 463
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.05 E-value=0.0033 Score=46.81 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=18.7
Q ss_pred ceeEEEEccCCCcHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~i 56 (185)
.=.++|+|+.|+|||||++.+
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l 48 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRL 48 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHH
Confidence 346899999999999999988
No 464
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.04 E-value=0.0033 Score=47.47 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 30 ki~vvG~~~vGKSsLi~~l 48 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVF 48 (205)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999987
No 465
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.04 E-value=0.0037 Score=51.32 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.5
Q ss_pred eeEEEEccCCCcHHHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
.+++|+||+|||||||.+.|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998843
No 466
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.03 E-value=0.0035 Score=49.41 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=17.8
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 3 kI~lvG~~n~GKSTL~n~L 21 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNAL 21 (256)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999998
No 467
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.02 E-value=0.003 Score=54.36 Aligned_cols=27 Identities=15% Similarity=-0.105 Sum_probs=23.8
Q ss_pred EeeCCceeEEEEccCCCcHHHHHHHHH
Q psy5297 31 FKSGEVSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 31 l~i~~g~~~~l~G~NGsGKSTLlk~iG 57 (185)
+.+-+|+..+|+||+|+|||||++.|-
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~ 172 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELI 172 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHH
Confidence 445689999999999999999999883
No 468
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.01 E-value=0.0042 Score=51.26 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.7
Q ss_pred CceeEEEEccCCCcHHHHHHHHHH
Q psy5297 35 EVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 35 ~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
++.+++|+||.|||||||.+.|..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999888743
No 469
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.00 E-value=0.0036 Score=47.40 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=17.8
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 36 ki~vvG~~~vGKSsli~~l 54 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVF 54 (214)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5889999999999999988
No 470
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.00 E-value=0.0037 Score=46.47 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=18.2
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
=.++++|+.|+|||||++.+
T Consensus 21 ~ki~~~G~~~~GKssl~~~l 40 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSY 40 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999988
No 471
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.99 E-value=0.0036 Score=46.78 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=18.1
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
=.++|+|+.|+|||||++.+
T Consensus 21 ~~i~v~G~~~~GKSsli~~l 40 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRF 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999887
No 472
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.99 E-value=0.0027 Score=46.14 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 9 ki~~vG~~~vGKTsli~~l 27 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRF 27 (178)
T ss_dssp EEEEECCGGGCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999987
No 473
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.98 E-value=0.004 Score=47.29 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=19.2
Q ss_pred ceeEEEEccCCCcHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIG 57 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG 57 (185)
--.++|+|+.|+|||||++.+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~ 59 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLI 59 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 3578999999999999998884
No 474
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.98 E-value=0.0022 Score=48.55 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=18.3
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
-.++|+|+.|+|||||++.+
T Consensus 30 ~~i~v~G~~~~GKSslin~l 49 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVL 49 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 46899999999999999987
No 475
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.97 E-value=0.0038 Score=46.47 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=17.1
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l 40 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVV 40 (196)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999865
No 476
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.97 E-value=0.0037 Score=47.06 Aligned_cols=19 Identities=26% Similarity=0.273 Sum_probs=17.4
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 27 ki~vvG~~~~GKSsLi~~l 45 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRY 45 (217)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4899999999999999887
No 477
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.96 E-value=0.0038 Score=47.72 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=18.4
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
-.++|+|+.|+|||||++.+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l 49 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIV 49 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999988
No 478
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.95 E-value=0.004 Score=46.03 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=17.4
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l 41 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKF 41 (187)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4899999999999999876
No 479
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.92 E-value=0.0041 Score=46.47 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 27 ki~vvG~~~~GKSsli~~l 45 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVF 45 (201)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999887
No 480
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.92 E-value=0.0032 Score=46.33 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.6
Q ss_pred ceeEEEEccCCCcHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~i 56 (185)
.=.++++|+.|+|||||++.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l 42 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRL 42 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 345899999999999999987
No 481
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0042 Score=45.84 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=17.6
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 20 ki~v~G~~~~GKssli~~l 38 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSY 38 (194)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999988
No 482
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.90 E-value=0.0024 Score=46.57 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=9.1
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 10 ki~v~G~~~~GKssl~~~l 28 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRF 28 (183)
T ss_dssp EEEEECCCCC---------
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999988
No 483
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.89 E-value=0.0043 Score=46.63 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 9 ki~vvG~~~~GKTsli~~l 27 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRL 27 (214)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999887
No 484
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.86 E-value=0.0054 Score=50.10 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=20.1
Q ss_pred ceeEEEEccCCCcHHHHHHHHHH
Q psy5297 36 VSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 36 g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
..+++|.||+|||||||.+.+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 46899999999999999988843
No 485
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.83 E-value=0.0049 Score=48.60 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=17.8
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 7 kI~lvG~~nvGKTsL~n~l 25 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNAL 25 (258)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999998
No 486
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.82 E-value=0.0052 Score=43.88 Aligned_cols=25 Identities=16% Similarity=-0.013 Sum_probs=20.9
Q ss_pred CCceeEEEEccCCCcHHHHHHHHHH
Q psy5297 34 GEVSFNLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 34 ~~g~~~~l~G~NGsGKSTLlk~iG~ 58 (185)
..+.-+.|.||.|+|||++.+.|..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3455689999999999999999854
No 487
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.82 E-value=0.0049 Score=48.95 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=17.8
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 5 ~I~lvG~~n~GKSTLin~l 23 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQL 23 (274)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999998
No 488
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.81 E-value=0.0048 Score=46.29 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=18.0
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
=.++++|+.|+|||||++.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l 50 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISY 50 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHH
Confidence 46899999999999999877
No 489
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.81 E-value=0.0048 Score=49.42 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=18.5
Q ss_pred eeEEEEccCCCcHHHHHHHH
Q psy5297 37 SFNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 37 ~~~~l~G~NGsGKSTLlk~i 56 (185)
-.++|+|+.|+|||||++.|
T Consensus 25 ~~I~vvG~~~~GKSTlln~l 44 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENI 44 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHH
Confidence 35999999999999999998
No 490
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.80 E-value=0.005 Score=46.11 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 31 ki~vvG~~~vGKSsli~~l 49 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRF 49 (201)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4899999999999999988
No 491
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.78 E-value=0.0055 Score=46.89 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
++.|+||.||||+|..+.|
T Consensus 2 ~Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 492
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.76 E-value=0.0012 Score=51.78 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=18.5
Q ss_pred EEEEccCCCcHHHHHHHHHH
Q psy5297 39 NLVTGPNMGGKSTYIRSIGV 58 (185)
Q Consensus 39 ~~l~G~NGsGKSTLlk~iG~ 58 (185)
+.|.||.|+|||||.+.++.
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999965
No 493
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.67 E-value=0.006 Score=45.38 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.5
Q ss_pred eEEEEccCCCcHHHHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSIGVS 59 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~iG~i 59 (185)
.+.|.||.|+||||+++.+..-
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999653
No 494
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.65 E-value=0.0063 Score=48.23 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=18.3
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|.+|+|||||++.+
T Consensus 101 ~v~~vG~~~vGKSslin~l 119 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKL 119 (262)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred heEEeCCCCCCHHHHHHHH
Confidence 7899999999999999998
No 495
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.64 E-value=0.0062 Score=46.15 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=17.6
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 29 ki~vvG~~~vGKSsL~~~l 47 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVL 47 (214)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4889999999999999987
No 496
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.64 E-value=0.0062 Score=46.55 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=17.3
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 39 kVvlvG~~~vGKSSLl~r~ 57 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIF 57 (211)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999876
No 497
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.60 E-value=0.0062 Score=48.29 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=18.0
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 28 ~i~vvG~~~~GKSSLln~l 46 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENF 46 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHH
Confidence 5999999999999999998
No 498
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.60 E-value=0.0065 Score=45.53 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=17.5
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 11 ki~i~G~~~~GKTsli~~l 29 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICY 29 (212)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999887
No 499
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.59 E-value=0.0069 Score=47.78 Aligned_cols=19 Identities=42% Similarity=0.398 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++++|+.|+|||||++.+
T Consensus 41 ~I~vvG~~g~GKSSLin~l 59 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSI 59 (270)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999987
No 500
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.0066 Score=46.11 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=17.7
Q ss_pred eEEEEccCCCcHHHHHHHH
Q psy5297 38 FNLVTGPNMGGKSTYIRSI 56 (185)
Q Consensus 38 ~~~l~G~NGsGKSTLlk~i 56 (185)
.++|+|+.|+|||||++.+
T Consensus 15 ki~v~G~~~vGKSsli~~l 33 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRF 33 (223)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4899999999999999988
Done!