RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5297
(185 letters)
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A*
2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Length = 934
Score = 308 bits (791), Expect = e-100
Identities = 99/174 (56%), Positives = 133/174 (76%)
Query: 2 GTGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
G G ++L RH VE+Q +++IPNDVYF+ + F+++TGPNMGGKSTYIR GV V
Sbjct: 628 GQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL 687
Query: 62 LAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVII 121
+AQIGCFVPC+SA +S+VD I RVGA DSQ +G+STFM EM ETA++++ T++SL+II
Sbjct: 688 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 747
Query: 122 DELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
DELGRGTST+DGFG+A +I+ +A+ F +FATHFHE+ L+ IPT N+H
Sbjct: 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B*
3thy_B* 3thz_B*
Length = 918
Score = 258 bits (662), Expect = 9e-82
Identities = 73/167 (43%), Positives = 103/167 (61%), Gaps = 3/167 (1%)
Query: 12 RHPIVE--LQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFV 69
RHP+++ L Y+PN+ ++TGPNMGGKS+YI+ + + +AQIG +V
Sbjct: 647 RHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYV 706
Query: 70 PCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTS 129
P + ATI +VD IFTR+GAAD+ Y+G STFM E+ +TA +I+K T SLVI+DELGRGTS
Sbjct: 707 PAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTS 766
Query: 130 TFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPT-FRNVH 175
T DG +A + + + TLF TH+ + L + N H
Sbjct: 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYH 813
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer;
HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 259 bits (663), Expect = 2e-81
Identities = 73/181 (40%), Positives = 109/181 (60%), Gaps = 8/181 (4%)
Query: 3 TGTLVLNQCRHPIVE-LQGGVSYIPNDVYF-------KSGEVSFNLVTGPNMGGKSTYIR 54
L L RHP + G +IPND+ ++G+ LVTGPNMGGKST +R
Sbjct: 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMR 807
Query: 55 SIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCT 114
G+ +AQ+GC+VP + ++ +D++FTR+GA+D G STF +E+ ETA+++ T
Sbjct: 808 QAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHAT 867
Query: 115 ENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNV 174
+SLV++DELGRGT+TFDG +A ++ +ELA + TLF+TH+H + R
Sbjct: 868 AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLG 927
Query: 175 H 175
H
Sbjct: 928 H 928
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA
binding, DNA repair, mismatch recognition; HET: DNA ADP;
2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12
c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A*
1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Length = 800
Score = 252 bits (645), Expect = 6e-80
Identities = 76/164 (46%), Positives = 102/164 (62%), Gaps = 1/164 (0%)
Query: 12 RHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC 71
RHP+VE +I N + S + ++TGPNMGGKSTY+R + +A IG +VP
Sbjct: 584 RHPVVEQVLNEPFIANPLNL-SPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPA 642
Query: 72 DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTF 131
I +D+IFTRVGAAD G STFM+EM ETA ++ TE SLV++DE+GRGTST+
Sbjct: 643 QKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTY 702
Query: 132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
DG +A + A LA+ + TLFATH+ E+ L + NVH
Sbjct: 703 DGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 746
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein,
mostly mixed alpha-beta structures, one domain is
entirely helical; HET: DNA; 2.20A {Thermus aquaticus}
SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A*
1fw6_A* 1ewr_A*
Length = 765
Score = 240 bits (614), Expect = 1e-75
Identities = 75/164 (45%), Positives = 111/164 (67%), Gaps = 8/164 (4%)
Query: 12 RHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPC 71
RHP+VE + ++PND+ + E+ L+TGPNM GKST++R + LAQ+G FVP
Sbjct: 557 RHPVVERR--TEFVPNDLEM-AHELV--LITGPNMAGKSTFLRQTALIALLAQVGSFVPA 611
Query: 72 DSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTF 131
+ A + + D I+TR+GA+D G STFM+EM+E A ++K+ TENSLV++DE+GRGTS+
Sbjct: 612 EEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSL 671
Query: 132 DGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVH 175
DG +A ++A L R +TLFATH+ E+ L +P +N+H
Sbjct: 672 DGVAIATAVAEALHERR-AYTLFATHYFELTALG--LPRLKNLH 712
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 1e-04
Identities = 35/220 (15%), Positives = 65/220 (29%), Gaps = 61/220 (27%)
Query: 9 NQCRHPIVELQGGVSY---IPNDV-YFKSGEVS------------FNLVTGPN-----MG 47
+ R P + + + + ND F VS L N +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 48 G--KST----YIRSIGV------SVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRG 95
G K+ S V +F + C+S +V++ + + D +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN---CNSPE-TVLEMLQKLLYQIDPNWTS 215
Query: 96 ISTFMMEMKETATVIK---------KCTENSLVIIDELGRGTSTFDGFGMACSIARELAS 146
S +K I+ K EN L+++ + + ++ F ++C I
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKI------ 268
Query: 147 NRQPFTLFATHFHEIA--LLSRVIPTFRNVHESKYLYHTN 184
L T F ++ L + H S L
Sbjct: 269 ------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.003
Identities = 36/226 (15%), Positives = 64/226 (28%), Gaps = 90/226 (39%)
Query: 26 PNDVYFKSGEVSFNL----------VTGPNMG-----------GKSTYIRSIGVSVFLAQ 64
P+ Y S +S L VT +G G + + + + +V +A+
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 65 --------------------IGC----FVPCDSATISVVDQIFTRVGAADSQYRGISTFM 100
IG P S S++ + G+ + M
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL-EDSLENN------EGVPSPM 338
Query: 101 -----MEMKETATVIKKC-----TENSLVIIDELGRGTSTF--DGF-----GMACSIARE 143
+ ++ + K + I L G G G+ ++ +
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEI--SLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 144 LAS-----NRQPFT----LFATHFHEIALLSRVIPTFRNVHESKYL 180
A +R PF+ F+ F +A P F H S L
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVAS-----P-F---H-SHLL 432
Score = 31.6 bits (71), Expect = 0.17
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 16/75 (21%)
Query: 73 SATISVVDQIFTRVG-----AADSQYRGISTFMMEMKETATVIKKCTENSL-VIIDELGR 126
+ + VV F R G A G S + M V ++ +L +++ +G+
Sbjct: 1780 ESLVEVV---FYR-GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 127 GTSTFDGFGMACSIA 141
T G I
Sbjct: 1836 RT------GWLVEIV 1844
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 34.6 bits (79), Expect = 0.009
Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 25/139 (17%)
Query: 40 LVTGPNMGGKSTYIRSIGVSVFLAQIGCFV---------------------PCDSATISV 78
++TG GK+T ++ I V + F S
Sbjct: 4 IITGEPGVGKTTLVKKI-VERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 79 VDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMAC 138
VG+ + + + E A K ++IIDE+G+ F
Sbjct: 63 FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKF---R 119
Query: 139 SIARELASNRQPFTLFATH 157
+ R++ + +
Sbjct: 120 DLVRQIMHDPNVNVVATIP 138
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 28.3 bits (63), Expect = 1.3
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 8/91 (8%)
Query: 90 DSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQ 149
D + + + L + ++G G S + ++A EL+ +
Sbjct: 127 DVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSY-----LLAAMAHELSEKKG 181
Query: 150 PFTLFATHFHEIALLSRVIPTFRNVHESKYL 180
T HF V N + +
Sbjct: 182 VSTTL-LHFPS--FAIDVKNAISNGSVKEEI 209
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11,
replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus}
PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 28.5 bits (63), Expect = 1.4
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 31 FKSGEVSF----NLVTGPNMGGKSTYIRSIGVSVFLA 63
V F NL+ G N GKS+ + +I V ++
Sbjct: 14 HSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWP 50
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 27.6 bits (62), Expect = 2.4
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 18/82 (21%)
Query: 13 HPIVELQG-GVSY----IPNDVYF--KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQI 65
H +++L G I + + G+ ++ G N GK+T + +
Sbjct: 19 HMLIQLDQIGRMKQGKTILKKISWQIAKGD--KWILYGLNGAGKTTLLNI---------L 67
Query: 66 GCFVPCDSATISVVDQIFTRVG 87
+ P S T+++ ++ +VG
Sbjct: 68 NAYEPATSGTVNLFGKMPGKVG 89
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 27.7 bits (61), Expect = 2.7
Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 14/85 (16%)
Query: 41 VTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFM 100
+ GPN GKST +R+I Q+ F + V+ + S +
Sbjct: 466 ICGPNGCGKSTLMRAIA----NGQVDGFPTQEECRTVYVEH---DIDGTHSDTSVLDFVF 518
Query: 101 MEMKETATVIKKCTENSLVIIDELG 125
T IK + E G
Sbjct: 519 ESGVGTKEAIKD-------KLIEFG 536
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone
signal, metallo-beta-lactamase FOL conserved
hypothetical protein; HET: EPE; 1.80A {Sulfolobus
tokodaii}
Length = 261
Score = 27.0 bits (60), Expect = 3.2
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 96 ISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFA 155
I +E E ATV C E V+ID G++ SIA + + +
Sbjct: 9 IPAGPVEFPEIATVYVMCGEKLTVMID-----A------GVSNSIAD-FSFLDKLDYIVL 56
Query: 156 THFH 159
TH H
Sbjct: 57 THLH 60
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 27.1 bits (59), Expect = 3.3
Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 32/161 (19%)
Query: 23 SYIPNDVYFKSGEVSFN---LVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVV 79
S +PN V+ KS + F +V G + GKST I S+ FL +
Sbjct: 2 SNLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSL----FLTDL------------YP 45
Query: 80 DQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACS 139
+++ + + I +E++E ++ L ++D G G + + +
Sbjct: 46 ERVISGAAEKIERTVQIEASTVEIEERGVKLR------LTVVDTPGYGDAI-NCRDCFKT 98
Query: 140 IARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYL 180
I + F + H+ + L+R VH Y
Sbjct: 99 IISYIDE------QFERYLHDESGLNRRHIIDNRVHCCFYF 133
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.1 bits (59), Expect = 4.5
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 21 GVSYIPNDVYFKSGEVSFN---LVTGPNMGGKSTYIRSI 56
G + +PN VY KS + F +V G + GKST I S+
Sbjct: 13 GFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSL 51
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 26.4 bits (59), Expect = 5.8
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 13/70 (18%)
Query: 14 PIVELQG-GVSY-----IPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI-GV------SV 60
+ ++ G Y + + F + V G N GKST + + G+ +
Sbjct: 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 61 FLAQIGCFVP 70
+ Q FVP
Sbjct: 63 EVYQSIGFVP 72
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG, U function; 2.20A {Vibrio cholerae}
SCOP: d.58.18.9 d.58.18.9
Length = 133
Score = 25.7 bits (56), Expect = 6.1
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 129 STFDGFGMACSIARELASNRQPFTLFATHFH 159
S+ + G+ + A +LA + + A ++H
Sbjct: 80 SSLEAVGLTAAFATKLAEHGISANVIAGYYH 110
>1sgw_A Putative ABC transporter; structural genomics, P protein
structure initiative, southeast collaboratory for S
genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP:
c.37.1.12
Length = 214
Score = 25.9 bits (58), Expect = 7.4
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 27 NDVYF--KSGEVSFNLVTGPNMGGKSTYIRSI 56
+ + G V N GPN GK+T +++I
Sbjct: 26 ERITMTIEKGNV-VNFH-GPNGIGKTTLLKTI 55
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 26.3 bits (58), Expect = 7.4
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 16 VELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
+ + S++ + + F+ G + G N GKS+ ++ ++F
Sbjct: 8 IRMNNFKSHVNSRIKFEKG---IVAIIGENGSGKSSIFEAVFFALF 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 26.1 bits (58), Expect = 7.6
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56
++ K GE+ + GPN GK+T+ R +
Sbjct: 287 DNGEAKEGEIIG--ILGPNGIGKTTFARIL 314
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB:
2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 26.0 bits (58), Expect = 7.8
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56
+V+ + GEV +V GP+ GKST++R +
Sbjct: 44 NVHIREGEVV--VVIGPSGSGKSTFLRCL 70
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural
genomics, PSI, protein structure initiative; HET: GLC;
1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Length = 146
Score = 25.4 bits (56), Expect = 9.6
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 117 SLVIIDELGRGTSTFDGFGMACSIARELASNR 148
S++I+ + G + F F + +A+ + + R
Sbjct: 26 SMLIVRDAFEGLTRFGEFQKSLGLAKNILAAR 57
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.404
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,783,900
Number of extensions: 158487
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 27
Length of query: 185
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,244,745
Effective search space: 411740265
Effective search space used: 411740265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.5 bits)